-- dump date 20140618_205820 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_003179032.1 257783815 8414261 250..1116 1 NC_013203.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rpb:RPB_3269 periplasmic sensor hybrid histidine kinase; ATPase domain-containing protein 1116 8414261 Apar_0001 Atopobium parvulum DSM 20469 ATPase domain-containing protein YP_003179032.1 250 D 521095 CDS YP_003179033.1 257783816 8412840 1200..2729 1 NC_013203.1 KEGG: wol:WD0001 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA 2729 8412840 Apar_0002 Atopobium parvulum DSM 20469 chromosomal replication initiator protein DnaA YP_003179033.1 1200 D 521095 CDS YP_003179034.1 257783817 8412841 2964..4064 1 NC_013203.1 KEGG: gur:Gura_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain; DNA polymerase III subunit beta 4064 8412841 Apar_0003 Atopobium parvulum DSM 20469 DNA polymerase III subunit beta YP_003179034.1 2964 D 521095 CDS YP_003179035.1 257783818 8412842 4080..5171 1 NC_013203.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: bba:Bd0003 DNA repair and genetic recombination protein; DNA replication and repair protein RecF 5171 8412842 Apar_0004 Atopobium parvulum DSM 20469 DNA replication and repair protein RecF YP_003179035.1 4080 D 521095 CDS YP_003179036.1 257783819 8412843 5164..5697 1 NC_013203.1 hypothetical protein 5697 8412843 Apar_0005 Atopobium parvulum DSM 20469 hypothetical protein YP_003179036.1 5164 D 521095 CDS YP_003179037.1 257783820 8412844 5858..7801 1 NC_013203.1 KEGG: bsu:BSU00060 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit B 7801 8412844 Apar_0006 Atopobium parvulum DSM 20469 DNA gyrase subunit B YP_003179037.1 5858 D 521095 CDS YP_003179038.1 257783821 8412845 7921..10626 1 NC_013203.1 KEGG: gbm:Gbem_0005 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; Bombesin family protein; DNA gyrase repeat beta- propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit A 10626 8412845 Apar_0007 Atopobium parvulum DSM 20469 DNA gyrase subunit A YP_003179038.1 7921 D 521095 CDS YP_003179039.1 257783822 8412846 complement(10804..11310) 1 NC_013203.1 PFAM: protein of unknown function DUF151; KEGG: sat:SYN_02150 putative cytoplasmic protein; hypothetical protein 11310 8412846 Apar_0008 Atopobium parvulum DSM 20469 hypothetical protein YP_003179039.1 10804 R 521095 CDS YP_003179040.1 257783823 8412849 11891..13030 1 NC_013203.1 PFAM: extracellular solute-binding protein family 1; KEGG: msu:MS1583 TbpA protein; family 1 extracellular solute-binding protein 13030 8412849 Apar_0009 Atopobium parvulum DSM 20469 family 1 extracellular solute-binding protein YP_003179040.1 11891 D 521095 CDS YP_003179041.1 257783824 8412850 13169..14878 1 NC_013203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msu:MS1586 ThiP protein; binding-protein-dependent transport system inner membrane protein 14878 8412850 Apar_0010 Atopobium parvulum DSM 20469 binding-protein-dependent transport system inner membrane protein YP_003179041.1 13169 D 521095 CDS YP_003179042.1 257783825 8412851 14882..15961 1 NC_013203.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sfu:Sfum_3496 ABC transporter related; ABC transporter-like protein 15961 8412851 Apar_0011 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179042.1 14882 D 521095 CDS YP_003179043.1 257783826 8412852 complement(16020..17018) 1 NC_013203.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: pat:Patl_0292 LacI family transcription regulator; LacI family transcriptional regulator 17018 8412852 Apar_0012 Atopobium parvulum DSM 20469 LacI family transcriptional regulator YP_003179043.1 16020 R 521095 CDS YP_003179044.1 257783827 8412854 18834..20114 1 NC_013203.1 KEGG: asu:Asuc_0588 hypothetical protein; hypothetical protein 20114 8412854 Apar_0014 Atopobium parvulum DSM 20469 hypothetical protein YP_003179044.1 18834 D 521095 CDS YP_003179045.1 257783828 8412855 20261..20719 1 NC_013203.1 hypothetical protein 20719 8412855 Apar_0015 Atopobium parvulum DSM 20469 hypothetical protein YP_003179045.1 20261 D 521095 CDS YP_003179046.1 257783829 8412856 20848..22686 1 NC_013203.1 TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: sat:SYN_00939 GTP-binding protein TypA/BipA; GTP-binding protein TypA 22686 8412856 Apar_0016 Atopobium parvulum DSM 20469 GTP-binding protein TypA YP_003179046.1 20848 D 521095 CDS YP_003179047.1 257783830 8412857 complement(22832..23575) 1 NC_013203.1 PFAM: protein of unknown function UPF0126; KEGG: ecq:ECED1_0164 conserved hypothetical protein; putative inner membrane protein; hypothetical protein 23575 8412857 Apar_0017 Atopobium parvulum DSM 20469 hypothetical protein YP_003179047.1 22832 R 521095 CDS YP_003179048.1 257783831 8412860 24040..25455 1 NC_013203.1 KEGG: hypothetical protein; hypothetical protein 25455 8412860 Apar_0018 Atopobium parvulum DSM 20469 hypothetical protein YP_003179048.1 24040 D 521095 CDS YP_003179049.1 257783832 8412861 25759..26052 1 NC_013203.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: bcr:BCAH187_A5662 ribosomal protein S6; 30S ribosomal protein S6 26052 8412861 Apar_0019 Atopobium parvulum DSM 20469 30S ribosomal protein S6 YP_003179049.1 25759 D 521095 CDS YP_003179050.1 257783833 8412862 26105..26557 1 NC_013203.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: nis:NIS_1165 single-strand DNA binding protein; single-strand binding protein 26557 8412862 Apar_0020 Atopobium parvulum DSM 20469 single-strand binding protein YP_003179050.1 26105 D 521095 CDS YP_003179051.1 257783834 8412863 26606..26878 1 NC_013203.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: sat:SYN_00643 SSU ribosomal protein S18P; 30S ribosomal protein S18 26878 8412863 Apar_0021 Atopobium parvulum DSM 20469 30S ribosomal protein S18 YP_003179051.1 26606 D 521095 CDS YP_003179052.1 257783835 8412864 26911..27969 1 NC_013203.1 KEGG: dol:Dole_0008 hypothetical protein; hypothetical protein 27969 8412864 Apar_0022 Atopobium parvulum DSM 20469 hypothetical protein YP_003179052.1 26911 D 521095 CDS YP_003179053.1 257783836 8412865 28002..28526 1 NC_013203.1 TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: dds:Ddes_2022 ribosomal protein L9; 50S ribosomal protein L9 28526 8412865 Apar_0023 Atopobium parvulum DSM 20469 50S ribosomal protein L9 YP_003179053.1 28002 D 521095 CDS YP_003179054.1 257783837 8412866 29027..30466 1 NC_013203.1 KEGG: dvm:DvMF_1353 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase 30466 8412866 Apar_0024 Atopobium parvulum DSM 20469 replicative DNA helicase YP_003179054.1 29027 D 521095 CDS YP_003179055.1 257783838 8412867 30608..31888 1 NC_013203.1 KEGG: gsu:GSU3308 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase; adenylosuccinate synthetase 31888 8412867 Apar_0025 Atopobium parvulum DSM 20469 adenylosuccinate synthetase YP_003179055.1 30608 D 521095 CDS YP_003179056.1 257783839 8412868 31892..34006 1 NC_013203.1 TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: glo:Glov_2759 phosphoribosylamine/glycine ligase; phosphoribosylamine/glycine ligase 34006 8412868 Apar_0026 Atopobium parvulum DSM 20469 phosphoribosylamine/glycine ligase YP_003179056.1 31892 D 521095 CDS YP_003179057.1 257783840 8412869 34022..34867 1 NC_013203.1 PFAM: NUDIX hydrolase; KEGG: bha:BH1524 hypothetical protein; NUDIX hydrolase 34867 8412869 Apar_0027 Atopobium parvulum DSM 20469 NUDIX hydrolase YP_003179057.1 34022 D 521095 CDS YP_003179058.1 257783841 8412870 34874..36721 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bha:BH3891 ABC transporter ATP-binding protein; ABC transporter-like protein 36721 8412870 Apar_0028 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179058.1 34874 D 521095 CDS YP_003179059.1 257783842 8412871 36912..37847 1 NC_013203.1 KEGG: GE20196 gene product from transcript GE20196- RA; hypothetical protein 37847 8412871 Apar_0029 Atopobium parvulum DSM 20469 hypothetical protein YP_003179059.1 36912 D 521095 CDS YP_003179060.1 257783843 8412872 complement(37975..38844) 1 NC_013203.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: cco:CCC13826_1956 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase type-1 38844 8412872 Apar_0030 Atopobium parvulum DSM 20469 phosphomethylpyrimidine kinase type-1 YP_003179060.1 37975 R 521095 CDS YP_003179061.1 257783844 8412873 38961..39422 1 NC_013203.1 KEGG: hypothetical protein; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 39422 8412873 Apar_0031 Atopobium parvulum DSM 20469 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_003179061.1 38961 D 521095 CDS YP_003179062.1 257783845 8412874 39656..40579 1 NC_013203.1 TIGRFAM: sortase, SrtB family; PFAM: peptidase C60 sortase A and B; KEGG: bcz:BCZK4288 surface protein cell wall anchor; sortase 40579 8412874 Apar_0032 Atopobium parvulum DSM 20469 sortase YP_003179062.1 39656 D 521095 CDS YP_003179063.1 257783846 8412875 40777..42270 1 NC_013203.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: ank:AnaeK_4338 amidophosphoribosyltransferase; amidophosphoribosyltransferase 42270 8412875 Apar_0033 Atopobium parvulum DSM 20469 amidophosphoribosyltransferase YP_003179063.1 40777 D 521095 CDS YP_003179064.1 257783847 8412876 42281..43369 1 NC_013203.1 KEGG: prw:PsycPRwf_1440 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase 43369 8412876 Apar_0034 Atopobium parvulum DSM 20469 phosphoribosylformylglycinamidine cyclo-ligase YP_003179064.1 42281 D 521095 CDS YP_003179065.1 257783848 8412877 43359..43973 1 NC_013203.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: phosphoribosylglycinamide formyltransferase ; K11175 phosphoribosylglycinamide formyltransferase 1; phosphoribosylglycinamide formyltransferase 43973 8412877 Apar_0035 Atopobium parvulum DSM 20469 phosphoribosylglycinamide formyltransferase YP_003179065.1 43359 D 521095 CDS YP_003179066.1 257783849 8412878 43974..45050 1 NC_013203.1 PFAM: acyltransferase 3; KEGG: psa:PST_4158 sugar acetylase; acyltransferase 3 45050 8412878 Apar_0036 Atopobium parvulum DSM 20469 acyltransferase 3 YP_003179066.1 43974 D 521095 CDS YP_003179067.1 257783850 8412879 complement(45198..45416) 1 NC_013203.1 hypothetical protein 45416 8412879 Apar_0037 Atopobium parvulum DSM 20469 hypothetical protein YP_003179067.1 45198 R 521095 CDS YP_003179068.1 257783851 8412881 complement(45727..46251) 1 NC_013203.1 hypothetical protein 46251 8412881 Apar_0039 Atopobium parvulum DSM 20469 hypothetical protein YP_003179068.1 45727 R 521095 CDS YP_003179069.1 257783852 8412883 complement(46515..47288) 1 NC_013203.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sus:Acid_0989 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 47288 8412883 Apar_0041 Atopobium parvulum DSM 20469 short-chain dehydrogenase/reductase SDR YP_003179069.1 46515 R 521095 CDS YP_003179070.1 257783853 8412884 47776..48399 1 NC_013203.1 PFAM: protein of unknown function DUF47; KEGG: gsu:GSU0388 hypothetical protein; hypothetical protein 48399 8412884 Apar_0042 Atopobium parvulum DSM 20469 hypothetical protein YP_003179070.1 47776 D 521095 CDS YP_003179071.1 257783854 8412885 48392..49387 1 NC_013203.1 PFAM: phosphate transporter; KEGG: glo:Glov_0587 phosphate transporter; phosphate transporter 49387 8412885 Apar_0043 Atopobium parvulum DSM 20469 phosphate transporter YP_003179071.1 48392 D 521095 CDS YP_003179072.1 257783855 8412886 49402..50064 1 NC_013203.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dps:DP1932 rRNA methylase homolog (CspR); tRNA/rRNA methyltransferase SpoU 50064 8412886 Apar_0044 Atopobium parvulum DSM 20469 tRNA/rRNA methyltransferase SpoU YP_003179072.1 49402 D 521095 CDS YP_003179073.1 257783856 8412887 complement(50207..50470) 1 NC_013203.1 KEGG: aci:ACIAD0111 hypothetical protein; hypothetical protein 50470 8412887 Apar_0045 Atopobium parvulum DSM 20469 hypothetical protein YP_003179073.1 50207 R 521095 CDS YP_003179074.1 257783857 8412888 complement(50610..51242) 1 NC_013203.1 KEGG: hhe:HH1060 hypothetical protein; hypothetical protein 51242 8412888 Apar_0046 Atopobium parvulum DSM 20469 hypothetical protein YP_003179074.1 50610 R 521095 CDS YP_003179075.1 257783858 8412889 complement(51279..51773) 1 NC_013203.1 PFAM: histidine triad (HIT) protein; KEGG: pfl:PFL_2782 hypothetical protein; histidine triad (HIT) protein 51773 8412889 Apar_0047 Atopobium parvulum DSM 20469 histidine triad (HIT) protein YP_003179075.1 51279 R 521095 CDS YP_003179076.1 257783859 8412890 complement(51827..52816) 1 NC_013203.1 PFAM: Abortive infection protein; KEGG: bcr:BCAH187_A2522 CAAX amino terminal protease family protein; abortive infection protein 52816 8412890 Apar_0048 Atopobium parvulum DSM 20469 abortive infection protein YP_003179076.1 51827 R 521095 CDS YP_003179077.1 257783860 8412891 complement(52906..53514) 1 NC_013203.1 KEGG: scl:sce0203 hypothetical protein; hypothetical protein 53514 8412891 Apar_0049 Atopobium parvulum DSM 20469 hypothetical protein YP_003179077.1 52906 R 521095 CDS YP_003179078.1 257783861 8412892 complement(53595..54350) 1 NC_013203.1 KEGG: bar:GBAA1914 hypothetical protein; hypothetical protein 54350 8412892 Apar_0050 Atopobium parvulum DSM 20469 hypothetical protein YP_003179078.1 53595 R 521095 CDS YP_003179079.1 257783862 8412893 complement(54520..55026) 1 NC_013203.1 hypothetical protein 55026 8412893 Apar_0051 Atopobium parvulum DSM 20469 hypothetical protein YP_003179079.1 54520 R 521095 CDS YP_003179080.1 257783863 8412895 complement(55616..56863) 1 NC_013203.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; KEGG: bha:BH0687 RNA methyltransferase; TrmA family RNA methyltransferase 56863 8412895 Apar_0053 Atopobium parvulum DSM 20469 TrmA family RNA methyltransferase YP_003179080.1 55616 R 521095 CDS YP_003179081.1 257783864 8412896 57034..58002 1 NC_013203.1 PFAM: Lactate/malate dehydrogenase; KEGG: ent:Ent638_2002 malate dehydrogenase (NAD); lactate/malate dehydrogenase 58002 8412896 Apar_0054 Atopobium parvulum DSM 20469 lactate/malate dehydrogenase YP_003179081.1 57034 D 521095 CDS YP_003179082.1 257783865 8412897 58519..59505 1 NC_013203.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: nar:Saro_3197 band 7 protein; hypothetical protein 59505 8412897 Apar_0055 Atopobium parvulum DSM 20469 hypothetical protein YP_003179082.1 58519 D 521095 CDS YP_003179083.1 257783866 8412898 59523..59723 1 NC_013203.1 KEGG: xac:XAC1234 hypothetical protein; hypothetical protein 59723 8412898 Apar_0056 Atopobium parvulum DSM 20469 hypothetical protein YP_003179083.1 59523 D 521095 CDS YP_003179084.1 257783867 8412899 59725..60969 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK4584 ABC transporter, ATP-binding protein; ABC transporter-like protein 60969 8412899 Apar_0057 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179084.1 59725 D 521095 CDS YP_003179085.1 257783868 8412900 60972..62816 1 NC_013203.1 KEGG: bcz:BCZK4583 permease; hypothetical protein 62816 8412900 Apar_0058 Atopobium parvulum DSM 20469 hypothetical protein YP_003179085.1 60972 D 521095 CDS YP_003179086.1 257783869 8412901 63091..65166 1 NC_013203.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: sfu:Sfum_0068 elongation factor G; small GTP-binding protein 65166 8412901 Apar_0059 Atopobium parvulum DSM 20469 small GTP-binding protein YP_003179086.1 63091 D 521095 CDS YP_003179087.1 257783870 8412902 65966..67723 1 NC_013203.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: glo:Glov_2235 deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase 67723 8412902 Apar_0060 Atopobium parvulum DSM 20469 1-deoxy-D-xylulose-5-phosphate synthase YP_003179087.1 65966 D 521095 CDS YP_003179088.1 257783871 8412903 complement(67997..69091) 1 NC_013203.1 PFAM: iron-containing alcohol dehydrogenase; 3- dehydroquinate synthase; KEGG: plu:plu4115 glycerol dehydrogenase; iron-containing alcohol dehydrogenase 69091 8412903 Apar_0061 Atopobium parvulum DSM 20469 iron-containing alcohol dehydrogenase YP_003179088.1 67997 R 521095 CDS YP_003179089.1 257783872 8412904 69295..70617 1 NC_013203.1 KEGG: gsu:GSU0185 hypothetical protein; hypothetical protein 70617 8412904 Apar_0062 Atopobium parvulum DSM 20469 hypothetical protein YP_003179089.1 69295 D 521095 CDS YP_003179090.1 257783873 8412905 70763..71965 1 NC_013203.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dal:Dalk_2373 beta-lactamase domain protein; beta-lactamase domain-containing protein 71965 8412905 Apar_0063 Atopobium parvulum DSM 20469 beta-lactamase domain-containing protein YP_003179090.1 70763 D 521095 CDS YP_003179091.1 257783874 8412906 72773..74116 1 NC_013203.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: glo:Glov_2611 protein of unknown function DUF21; hypothetical protein 74116 8412906 Apar_0064 Atopobium parvulum DSM 20469 hypothetical protein YP_003179091.1 72773 D 521095 CDS YP_003179092.1 257783875 8412907 74163..75017 1 NC_013203.1 KEGG: hypothetical protein; hypothetical protein 75017 8412907 Apar_0065 Atopobium parvulum DSM 20469 hypothetical protein YP_003179092.1 74163 D 521095 CDS YP_003179093.1 257783876 8412908 75075..75536 1 NC_013203.1 KEGG: afr:AFE_2325 hypothetical protein; hypothetical protein 75536 8412908 Apar_0066 Atopobium parvulum DSM 20469 hypothetical protein YP_003179093.1 75075 D 521095 CDS YP_003179094.1 257783877 8412909 75602..76576 1 NC_013203.1 KEGG: smt:Smal_0268 hypothetical protein; hypothetical protein 76576 8412909 Apar_0067 Atopobium parvulum DSM 20469 hypothetical protein YP_003179094.1 75602 D 521095 CDS YP_003179095.1 257783878 8412910 complement(76677..78035) 1 NC_013203.1 PFAM: natural resistance-associated macrophage protein; KEGG: gbm:Gbem_3239 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 78035 8412910 Apar_0068 Atopobium parvulum DSM 20469 natural resistance-associated macrophage protein YP_003179095.1 76677 R 521095 CDS YP_003179096.1 257783879 8412911 complement(78047..79924) 1 NC_013203.1 PFAM: MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: gur:Gura_2041 MgtE intracellular region; MgtE integral membrane protein 79924 8412911 Apar_0069 Atopobium parvulum DSM 20469 MgtE integral membrane protein YP_003179096.1 78047 R 521095 CDS YP_003179097.1 257783880 8412912 complement(80378..80923) 1 NC_013203.1 PFAM: LemA family protein; KEGG: sus:Acid_0971 LemA family protein; LemA family protein 80923 8412912 Apar_0070 Atopobium parvulum DSM 20469 LemA family protein YP_003179097.1 80378 R 521095 CDS YP_003179098.1 257783881 8412914 81481..81981 1 NC_013203.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pne:Pnec_0542 CMP/dCMP deaminase zinc-binding; zinc-binding CMP/dCMP deaminase 81981 8412914 Apar_0071 Atopobium parvulum DSM 20469 zinc-binding CMP/dCMP deaminase YP_003179098.1 81481 D 521095 CDS YP_003179099.1 257783882 8412915 complement(81984..83303) 1 NC_013203.1 KEGG: glo:Glov_1090 protein of unknown function Met10; SAM-dependent methyltransferase 83303 8412915 Apar_0072 Atopobium parvulum DSM 20469 SAM-dependent methyltransferase YP_003179099.1 81984 R 521095 CDS YP_003179100.1 257783883 8412916 complement(83388..83768) 1 NC_013203.1 PFAM: protein of unknown function DUF1304; KEGG: bba:Bd2510 transmembrane protein; hypothetical protein 83768 8412916 Apar_0073 Atopobium parvulum DSM 20469 hypothetical protein YP_003179100.1 83388 R 521095 CDS YP_003179101.1 257783884 8412917 complement(83810..85162) 1 NC_013203.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: ade:Adeh_2955 DEAD/DEAH box helicase-like protein; DEAD/DEAH box helicase 85162 8412917 Apar_0074 Atopobium parvulum DSM 20469 DEAD/DEAH box helicase YP_003179101.1 83810 R 521095 CDS YP_003179102.1 257783885 8412918 85209..86192 1 NC_013203.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 86192 8412918 Apar_0075 Atopobium parvulum DSM 20469 homoserine O-succinyltransferase YP_003179102.1 85209 D 521095 CDS YP_003179103.1 257783886 8412919 86322..86882 1 NC_013203.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: swd:Swoo_0963 phosphodiesterase; phosphodiesterase 86882 8412919 Apar_0076 Atopobium parvulum DSM 20469 phosphodiesterase YP_003179103.1 86322 D 521095 CDS YP_003179104.1 257783887 8412920 complement(87003..87722) 1 NC_013203.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bsu:BSU05850 hypothetical protein; GntR family transcriptional regulator 87722 8412920 Apar_0077 Atopobium parvulum DSM 20469 GntR family transcriptional regulator YP_003179104.1 87003 R 521095 CDS YP_003179105.1 257783888 8412921 87861..89258 1 NC_013203.1 PFAM: glycoside hydrolase family 1; KEGG: bha:BH3918 beta-glucosidase; glycoside hydrolase family protein 89258 8412921 Apar_0078 Atopobium parvulum DSM 20469 glycoside hydrolase family protein YP_003179105.1 87861 D 521095 CDS YP_003179106.1 257783889 8412922 89282..90721 1 NC_013203.1 TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system EIIC; KEGG: ent:Ent638_1308 PTS system lactose/cellobiose family IIC subunit; PTS system lactose/cellobiose family transporter subunit IIC 90721 8412922 Apar_0079 Atopobium parvulum DSM 20469 PTS system lactose/cellobiose family transporter subunit IIC YP_003179106.1 89282 D 521095 CDS YP_003179107.1 257783890 8412923 90798..91094 1 NC_013203.1 PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: plu:plu2754 PTS system, cellobiose-specific IIB component; PTS system lactose/cellobiose-specific transporter subunit IIB 91094 8412923 Apar_0080 Atopobium parvulum DSM 20469 PTS system lactose/cellobiose-specific transporter subunit IIB YP_003179107.1 90798 D 521095 CDS YP_003179108.1 257783891 8412924 91150..91485 1 NC_013203.1 PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: bcy:Bcer98_3752 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; PTS system lactose/cellobiose-specific transporter subunit IIA 91485 8412924 Apar_0081 Atopobium parvulum DSM 20469 PTS system lactose/cellobiose-specific transporter subunit IIA YP_003179108.1 91150 D 521095 CDS YP_003179109.1 257783892 8412925 complement(91647..93119) 1 NC_013203.1 KEGG: bmv:BMASAVP1_0601 hypothetical protein; hypothetical protein 93119 8412925 Apar_0082 Atopobium parvulum DSM 20469 hypothetical protein YP_003179109.1 91647 R 521095 CDS YP_003179110.1 257783893 8412926 93207..93344 1 NC_013203.1 hypothetical protein 93344 8412926 Apar_0083 Atopobium parvulum DSM 20469 hypothetical protein YP_003179110.1 93207 D 521095 CDS YP_003179111.1 257783894 8412927 complement(93286..94287) 1 NC_013203.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 94287 8412927 Apar_0084 Atopobium parvulum DSM 20469 asparagine synthetase AsnA YP_003179111.1 93286 R 521095 CDS YP_003179112.1 257783895 8412928 94610..95041 1 NC_013203.1 PFAM: Ferritin Dps family protein; KEGG: hhe:HH0210 starvation-inducible DNA-binding protein Dps; ferritin Dps family protein 95041 8412928 Apar_0085 Atopobium parvulum DSM 20469 ferritin Dps family protein YP_003179112.1 94610 D 521095 CDS YP_003179113.1 257783896 8412929 95323..95814 1 NC_013203.1 hypothetical protein 95814 8412929 Apar_0086 Atopobium parvulum DSM 20469 hypothetical protein YP_003179113.1 95323 D 521095 CDS YP_003179114.1 257783897 8412930 96620..96787 1 NC_013203.1 hypothetical protein 96787 8412930 Apar_0087 Atopobium parvulum DSM 20469 hypothetical protein YP_003179114.1 96620 D 521095 CDS YP_003179115.1 257783898 8412931 96798..97784 1 NC_013203.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_1070 ferredoxin; 4Fe-4S ferredoxin 97784 8412931 Apar_0088 Atopobium parvulum DSM 20469 4Fe-4S ferredoxin YP_003179115.1 96798 D 521095 CDS YP_003179116.1 257783899 8412932 97858..98505 1 NC_013203.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nma:NMA0493 putative periplasmic protein; redoxin domain-containing protein 98505 8412932 Apar_0089 Atopobium parvulum DSM 20469 redoxin domain-containing protein YP_003179116.1 97858 D 521095 CDS YP_003179117.1 257783900 8412933 98683..99363 1 NC_013203.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: glo:Glov_0998 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 99363 8412933 Apar_0090 Atopobium parvulum DSM 20469 winged helix family two component transcriptional regulator YP_003179117.1 98683 D 521095 CDS YP_003179118.1 257783901 8412934 99356..100516 1 NC_013203.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sus:Acid_6896 heavy metal sensor signal transduction histidine kinase; histidine kinase 100516 8412934 Apar_0091 Atopobium parvulum DSM 20469 histidine kinase YP_003179118.1 99356 D 521095 CDS YP_003179119.1 257783902 8412935 100639..101307 1 NC_013203.1 PFAM: Transaldolase; KEGG: vpa:VPA1569 fructose-6-phosphate aldolase; Transaldolase 101307 8412935 Apar_0092 Atopobium parvulum DSM 20469 Transaldolase YP_003179119.1 100639 D 521095 CDS YP_003179120.1 257783903 8412936 101349..102767 1 NC_013203.1 KEGG: tcx:Tcr_1102 hypothetical protein; hypothetical protein 102767 8412936 Apar_0093 Atopobium parvulum DSM 20469 hypothetical protein YP_003179120.1 101349 D 521095 CDS YP_003179121.1 257783904 8412937 102983..104887 1 NC_013203.1 KEGG: gme:Gmet_3532 chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK 104887 8412937 Apar_0094 Atopobium parvulum DSM 20469 chaperone protein DnaK YP_003179121.1 102983 D 521095 CDS YP_003179122.1 257783905 8412938 105012..105860 1 NC_013203.1 PFAM: GrpE protein; KEGG: scl:sce0004 chloroplast GrpE protein; GrpE protein HSP-70 cofactor 105860 8412938 Apar_0095 Atopobium parvulum DSM 20469 GrpE protein HSP-70 cofactor YP_003179122.1 105012 D 521095 CDS YP_003179123.1 257783906 8412939 105893..106825 1 NC_013203.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: chaperone DnaJ domain protein ; K05516 curved DNA-binding protein; chaperone DnaJ domain-containing protein 106825 8412939 Apar_0096 Atopobium parvulum DSM 20469 chaperone DnaJ domain-containing protein YP_003179123.1 105893 D 521095 CDS YP_003179124.1 257783907 8412940 106825..107298 1 NC_013203.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: cha:CHAB381_0975 putative heat shock protein HspR; MerR family transcriptional regulator 107298 8412940 Apar_0097 Atopobium parvulum DSM 20469 MerR family transcriptional regulator YP_003179124.1 106825 D 521095 CDS YP_003179125.1 257783908 8412941 107464..107805 1 NC_013203.1 hypothetical protein 107805 8412941 Apar_0098 Atopobium parvulum DSM 20469 hypothetical protein YP_003179125.1 107464 D 521095 CDS YP_003179126.1 257783909 8412942 107789..108235 1 NC_013203.1 KEGG: glo:Glov_1224 PilT protein domain protein; PilT protein domain-containing protein 108235 8412942 Apar_0099 Atopobium parvulum DSM 20469 PilT protein domain-containing protein YP_003179126.1 107789 D 521095 CDS YP_003179127.1 257783910 8412943 108428..111010 1 NC_013203.1 KEGG: ank:AnaeK_0413 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 111010 8412943 Apar_0100 Atopobium parvulum DSM 20469 ATP-dependent chaperone ClpB YP_003179127.1 108428 D 521095 CDS YP_003179128.1 257783911 8412944 111023..111262 1 NC_013203.1 hypothetical protein 111262 8412944 Apar_0101 Atopobium parvulum DSM 20469 hypothetical protein YP_003179128.1 111023 D 521095 CDS YP_003179129.1 257783912 8412945 111583..116928 1 NC_013203.1 PFAM: glycoside hydrolase family 2 sugar binding; Ig domain protein; glycoside hydrolase family 2 TIM barrel; coagulation factor 5/8 type domain protein; KEGG: sus:Acid_4901 glycoside hydrolase family protein; glycoside hydrolase family protein 116928 8412945 Apar_0102 Atopobium parvulum DSM 20469 glycoside hydrolase family protein YP_003179129.1 111583 D 521095 CDS YP_003179130.1 257783913 8412946 complement(117082..117645) 1 NC_013203.1 hypothetical protein 117645 8412946 Apar_0103 Atopobium parvulum DSM 20469 hypothetical protein YP_003179130.1 117082 R 521095 CDS YP_003179131.1 257783914 8412947 117921..118355 1 NC_013203.1 PFAM: heat shock protein Hsp20; KEGG: bcr:BCAH187_A2372 heat shock protein, HSP20 family; heat shock protein Hsp20 118355 8412947 Apar_0104 Atopobium parvulum DSM 20469 heat shock protein Hsp20 YP_003179131.1 117921 D 521095 CDS YP_003179132.1 257783915 8412948 complement(118615..119457) 1 NC_013203.1 PFAM: beta-lactamase domain protein; KEGG: pau:PA14_51250 hypothetical protein; beta-lactamase domain-containing protein 119457 8412948 Apar_0105 Atopobium parvulum DSM 20469 beta-lactamase domain-containing protein YP_003179132.1 118615 R 521095 CDS YP_003179133.1 257783916 8412949 119701..121170 1 NC_013203.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: sat:SYN_02776 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase 121170 8412949 Apar_0106 Atopobium parvulum DSM 20469 tRNA(Ile)-lysidine synthetase YP_003179133.1 119701 D 521095 CDS YP_003179134.1 257783917 8412950 121170..121718 1 NC_013203.1 KEGG: bsu:BSU00680 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 121718 8412950 Apar_0107 Atopobium parvulum DSM 20469 hypoxanthine phosphoribosyltransferase YP_003179134.1 121170 D 521095 CDS YP_003179135.1 257783918 8412951 122006..123190 1 NC_013203.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 123190 8412951 Apar_0108 Atopobium parvulum DSM 20469 aspartate aminotransferase YP_003179135.1 122006 D 521095 CDS YP_003179136.1 257783919 8412952 complement(123777..124589) 1 NC_013203.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: ppr:PBPRB2022 putative hydrolase; PHP domain-containing protein 124589 8412952 Apar_0109 Atopobium parvulum DSM 20469 PHP domain-containing protein YP_003179136.1 123777 R 521095 CDS YP_003179137.1 257783920 8412953 complement(124691..125470) 1 NC_013203.1 KEGG: bcz:BCZK3496 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 125470 8412953 Apar_0110 Atopobium parvulum DSM 20469 exodeoxyribonuclease III Xth YP_003179137.1 124691 R 521095 CDS YP_003179138.1 257783921 8412954 125674..127146 1 NC_013203.1 TIGRFAM: dihydropteroate synthase; 2-amino-4- hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: dihydropteroate synthase DHPS; 78-dihydro-6- hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: bbr:BB1461 dihydropteroate synthase; dihydropteroate synthase 127146 8412954 Apar_0111 Atopobium parvulum DSM 20469 dihydropteroate synthase YP_003179138.1 125674 D 521095 CDS YP_003179139.1 257783922 8412955 127137..127847 1 NC_013203.1 hypothetical protein 127847 8412955 Apar_0112 Atopobium parvulum DSM 20469 hypothetical protein YP_003179139.1 127137 D 521095 CDS YP_003179140.1 257783923 8412956 complement(127883..128665) 1 NC_013203.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: bcy:Bcer98_0061 pantothenate kinase; putative Baf family transcriptional acitvator 128665 8412956 Apar_0113 Atopobium parvulum DSM 20469 putative Baf family transcriptional acitvator YP_003179140.1 127883 R 521095 CDS YP_003179141.1 257783924 8412957 128907..129326 1 NC_013203.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: ade:Adeh_0689 50S ribosomal protein L31P; 50S ribosomal protein L31 129326 8412957 Apar_0114 Atopobium parvulum DSM 20469 50S ribosomal protein L31 YP_003179141.1 128907 D 521095 CDS YP_003179142.1 257783925 8412958 129463..131730 1 NC_013203.1 KEGG: dal:Dalk_1998 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 131730 8412958 Apar_0115 Atopobium parvulum DSM 20469 DNA polymerase III subunits gamma and tau YP_003179142.1 129463 D 521095 CDS YP_003179143.1 257783926 8412959 131826..132164 1 NC_013203.1 PFAM: conserved hypothetical protein; KEGG: gme:Gmet_3421 hypothetical protein; hypothetical protein 132164 8412959 Apar_0116 Atopobium parvulum DSM 20469 hypothetical protein YP_003179143.1 131826 D 521095 CDS YP_003179144.1 257783927 8412960 132168..132779 1 NC_013203.1 KEGG: mxa:MXAN_1930 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; recombination protein RecR 132779 8412960 Apar_0117 Atopobium parvulum DSM 20469 recombination protein RecR YP_003179144.1 132168 D 521095 CDS YP_003179145.1 257783928 8412961 132782..133453 1 NC_013203.1 hypothetical protein 133453 8412961 Apar_0118 Atopobium parvulum DSM 20469 hypothetical protein YP_003179145.1 132782 D 521095 CDS YP_003179146.1 257783929 8412963 134044..134757 1 NC_013203.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: mxa:MXAN_2679 HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase 134757 8412963 Apar_0119 Atopobium parvulum DSM 20469 HAD-superfamily hydrolase YP_003179146.1 134044 D 521095 CDS YP_003179147.1 257783930 8412964 134833..135429 1 NC_013203.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: hha:Hhal_0540 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 135429 8412964 Apar_0120 Atopobium parvulum DSM 20469 BadM/Rrf2 family transcriptional regulator YP_003179147.1 134833 D 521095 CDS YP_003179148.1 257783931 8412965 135534..136535 1 NC_013203.1 PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; KEGG: gsu:GSU1613 A/G-specific adenine glycosylase, putative; HhH-GPD family protein 136535 8412965 Apar_0121 Atopobium parvulum DSM 20469 HhH-GPD family protein YP_003179148.1 135534 D 521095 CDS YP_003179149.1 257783932 8412966 136691..137236 1 NC_013203.1 PFAM: Rubrerythrin; KEGG: gbm:Gbem_2313 rubrerythrin; rubrerythrin 137236 8412966 Apar_0122 Atopobium parvulum DSM 20469 rubrerythrin YP_003179149.1 136691 D 521095 CDS YP_003179150.1 257783933 8412967 complement(137433..138104) 1 NC_013203.1 KEGG: dds:Ddes_0198 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III 138104 8412967 Apar_0123 Atopobium parvulum DSM 20469 endonuclease III YP_003179150.1 137433 R 521095 CDS YP_003179151.1 257783934 8412968 138305..141748 1 NC_013203.1 KEGG: bsu:BSU00550 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; TRCF domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor 141748 8412968 Apar_0124 Atopobium parvulum DSM 20469 transcription-repair coupling factor YP_003179151.1 138305 D 521095 CDS YP_003179152.1 257783935 8412969 141751..142833 1 NC_013203.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: mmw:Mmwyl1_3508 oxidoreductase domain- containing protein; oxidoreductase domain-containing protein 142833 8412969 Apar_0125 Atopobium parvulum DSM 20469 oxidoreductase domain-containing protein YP_003179152.1 141751 D 521095 CDS YP_003179153.1 257783936 8412970 142839..143741 1 NC_013203.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: bsu:BSU00580 hypothetical protein; MazG family protein 143741 8412970 Apar_0126 Atopobium parvulum DSM 20469 MazG family protein YP_003179153.1 142839 D 521095 CDS YP_003179154.1 257783937 8412971 143919..144797 1 NC_013203.1 KEGG: hypothetical protein; hypothetical protein 144797 8412971 Apar_0127 Atopobium parvulum DSM 20469 hypothetical protein YP_003179154.1 143919 D 521095 CDS YP_003179155.1 257783938 8412972 144797..145840 1 NC_013203.1 PFAM: Ppx/GppA phosphatase; KEGG: ank:AnaeK_0692 Ppx/GppA phosphatase; Ppx/GppA phosphatase 145840 8412972 Apar_0128 Atopobium parvulum DSM 20469 Ppx/GppA phosphatase YP_003179155.1 144797 D 521095 CDS YP_003179156.1 257783939 8412974 146099..147838 1 NC_013203.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; Transketolase domain protein; SMART: regulatory protein GntR HTH; KEGG: gme:Gmet_0551 transketolase subunit A; UbiC transcription regulator-associated domain-containing protein 147838 8412974 Apar_0129 Atopobium parvulum DSM 20469 UbiC transcription regulator-associated domain-containing protein YP_003179156.1 146099 D 521095 CDS YP_003179157.1 257783940 8412975 147832..148887 1 NC_013203.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: gdi:GDI3010 putative transketolase; transketolase 148887 8412975 Apar_0130 Atopobium parvulum DSM 20469 transketolase YP_003179157.1 147832 D 521095 CDS YP_003179158.1 257783941 8412977 complement(149076..150104) 1 NC_013203.1 hypothetical protein 150104 8412977 Apar_0131 Atopobium parvulum DSM 20469 hypothetical protein YP_003179158.1 149076 R 521095 CDS YP_003179159.1 257783942 8412978 complement(150101..151282) 1 NC_013203.1 response regulator receiver and SARP domain-containing protein 151282 8412978 Apar_0132 Atopobium parvulum DSM 20469 response regulator receiver and SARP domain-containing protein YP_003179159.1 150101 R 521095 CDS YP_003179160.1 257783943 8412979 151570..152784 1 NC_013203.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: alcohol dehydrogensae; iron-containing alcohol dehydrogenase 152784 8412979 Apar_0133 Atopobium parvulum DSM 20469 iron-containing alcohol dehydrogenase YP_003179160.1 151570 D 521095 CDS YP_003179161.1 257783944 8412980 153037..153678 1 NC_013203.1 KEGG: bcr:BCAH187_A2002 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase 153678 8412980 Apar_0134 Atopobium parvulum DSM 20469 deoxyribose-phosphate aldolase YP_003179161.1 153037 D 521095 CDS YP_003179162.1 257783945 8412981 complement(153709..154593) 1 NC_013203.1 PFAM: Radical SAM domain protein; KEGG: sew:SeSA_A4819 pyruvate formate lyase activating enzyme; (formate-C-acetyltransferase)-activating protein 154593 8412981 Apar_0135 Atopobium parvulum DSM 20469 (formate-C-acetyltransferase)-activating protein YP_003179162.1 153709 R 521095 CDS YP_003179163.1 257783946 8412982 complement(154613..156115) 1 NC_013203.1 KEGG: hiq:CGSHiGG_05855 hypothetical protein; hypothetical protein 156115 8412982 Apar_0136 Atopobium parvulum DSM 20469 hypothetical protein YP_003179163.1 154613 R 521095 CDS YP_003179164.1 257783947 8412983 complement(156246..156977) 1 NC_013203.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; KEGG: tgr:Tgr7_2797 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 156977 8412983 Apar_0137 Atopobium parvulum DSM 20469 Crp/Fnr family transcriptional regulator YP_003179164.1 156246 R 521095 CDS YP_003179165.1 257783948 8412984 complement(157251..158177) 1 NC_013203.1 PFAM: Indigoidine synthase A family protein; KEGG: slo:Shew_2724 indigoidine synthase A family protein; Indigoidine synthase A family protein 158177 8412984 Apar_0138 Atopobium parvulum DSM 20469 Indigoidine synthase A family protein YP_003179165.1 157251 R 521095 CDS YP_003179166.1 257783949 8412985 complement(158252..159334) 1 NC_013203.1 PFAM: PfkB domain protein; regulatory protein MarR; KEGG: slo:Shew_2725 ribokinase-like domain- containing protein; MarR family transcriptional regulator 159334 8412985 Apar_0139 Atopobium parvulum DSM 20469 MarR family transcriptional regulator YP_003179166.1 158252 R 521095 CDS YP_003179167.1 257783950 8412986 159752..160942 1 NC_013203.1 KEGG: bcy:Bcer98_2786 phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: Phosphopentomutase domain protein; metalloenzyme domain protein; phosphopentomutase 160942 8412986 Apar_0140 Atopobium parvulum DSM 20469 phosphopentomutase YP_003179167.1 159752 D 521095 CDS YP_003179168.1 257783951 8412987 160942..161652 1 NC_013203.1 TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: purine nucleoside phosphorylase ; K03784 purine-nucleoside phosphorylase; purine nucleoside phosphorylase 161652 8412987 Apar_0141 Atopobium parvulum DSM 20469 purine nucleoside phosphorylase YP_003179168.1 160942 D 521095 CDS YP_003179169.1 257783952 8412988 161820..162893 1 NC_013203.1 PFAM: basic membrane lipoprotein; KEGG: bcy:Bcer98_2443 basic membrane lipoprotein; basic membrane lipoprotein 162893 8412988 Apar_0142 Atopobium parvulum DSM 20469 basic membrane lipoprotein YP_003179169.1 161820 D 521095 CDS YP_003179170.1 257783953 8412989 163045..164574 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcr:BCAH187_A3838 sugar ABC transporter, ATP- binding protein; ABC transporter-like protein 164574 8412989 Apar_0143 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179170.1 163045 D 521095 CDS YP_003179171.1 257783954 8412990 164571..165773 1 NC_013203.1 PFAM: inner-membrane translocator; KEGG: bcz:BCZK3549 ABC transporter permease; inner-membrane translocator 165773 8412990 Apar_0144 Atopobium parvulum DSM 20469 inner-membrane translocator YP_003179171.1 164571 D 521095 CDS YP_003179172.1 257783955 8412991 165763..166686 1 NC_013203.1 PFAM: inner-membrane translocator; KEGG: bcb:BCB4264_A3887 sugar ABC transporter, permease protein; inner-membrane translocator 166686 8412991 Apar_0145 Atopobium parvulum DSM 20469 inner-membrane translocator YP_003179172.1 165763 D 521095 CDS YP_003179173.1 257783956 8412992 166686..167231 1 NC_013203.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; Cytidine and deoxycytidylate deaminase zinc-binding domain protein; KEGG: bha:BH1366 cytidine deaminase; cytidine deaminase 167231 8412992 Apar_0146 Atopobium parvulum DSM 20469 cytidine deaminase YP_003179173.1 166686 D 521095 CDS YP_003179174.1 257783957 8412993 167367..168692 1 NC_013203.1 KEGG: bca:BCE_4154 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like; pyrimidine-nucleoside phosphorylase 168692 8412993 Apar_0147 Atopobium parvulum DSM 20469 pyrimidine-nucleoside phosphorylase YP_003179174.1 167367 D 521095 CDS YP_003179175.1 257783958 8412994 169275..169982 1 NC_013203.1 KEGG: bca:BCE_3136 TetR family transcriptional regulator; putative TetR family transcriptional regulator 169982 8412994 Apar_0148 Atopobium parvulum DSM 20469 putative TetR family transcriptional regulator YP_003179175.1 169275 D 521095 CDS YP_003179176.1 257783959 8412995 169975..174729 1 NC_013203.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: ccv:CCV52592_1797 CoA-substrate-specific enzyme activase domain-containing protein; CoA-substrate-specific enzyme activase 174729 8412995 Apar_0149 Atopobium parvulum DSM 20469 CoA-substrate-specific enzyme activase YP_003179176.1 169975 D 521095 CDS YP_003179177.1 257783960 8412996 complement(174758..175768) 1 NC_013203.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ppr:PBPRB1561 putative ribose operon repressor, RbsR; LacI family transcriptional regulator 175768 8412996 Apar_0150 Atopobium parvulum DSM 20469 LacI family transcriptional regulator YP_003179177.1 174758 R 521095 CDS YP_003179178.1 257783961 8412997 176020..176301 1 NC_013203.1 PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: oan:Oant_4121 phosphotransferase system lactose/cellobiose-specific IIB subunit; PTS system lactose/cellobiose-specific transporter subunit IIB 176301 8412997 Apar_0151 Atopobium parvulum DSM 20469 PTS system lactose/cellobiose-specific transporter subunit IIB YP_003179178.1 176020 D 521095 CDS YP_003179179.1 257783962 8412998 176372..177796 1 NC_013203.1 PFAM: PTS system Galactitol-specific IIC component; KEGG: vei:Veis_2223 PTS system galactitol-specific IIC component; PTS system Galactitol-specific IIC component 177796 8412998 Apar_0152 Atopobium parvulum DSM 20469 PTS system Galactitol-specific IIC component YP_003179179.1 176372 D 521095 CDS YP_003179180.1 257783963 8412999 177900..178472 1 NC_013203.1 hypothetical protein 178472 8412999 Apar_0153 Atopobium parvulum DSM 20469 hypothetical protein YP_003179180.1 177900 D 521095 CDS YP_003179181.1 257783964 8413000 178475..178948 1 NC_013203.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: oan:Oant_4120 putative PTS IIA-like nitrogen- regulatory protein PtsN; putative PTS IIA-like nitrogen-regulatory protein PtsN 178948 8413000 Apar_0154 Atopobium parvulum DSM 20469 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_003179181.1 178475 D 521095 CDS YP_003179182.1 257783965 8413001 179005..180267 1 NC_013203.1 KEGG: bcb:BCB4264_A3843 peptidase T; TIGRFAM: peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20; peptidase T 180267 8413001 Apar_0155 Atopobium parvulum DSM 20469 peptidase T YP_003179182.1 179005 D 521095 CDS YP_003179183.1 257783966 8413002 180487..181029 1 NC_013203.1 hypothetical protein 181029 8413002 Apar_0156 Atopobium parvulum DSM 20469 hypothetical protein YP_003179183.1 180487 D 521095 CDS YP_003179184.1 257783967 8413003 181155..182012 1 NC_013203.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase; KEGG: eca:ECA1906 putative hydrolase; HAD-superfamily hydrolase 182012 8413003 Apar_0157 Atopobium parvulum DSM 20469 HAD-superfamily hydrolase YP_003179184.1 181155 D 521095 CDS YP_003179185.1 257783968 8413004 182014..182811 1 NC_013203.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: vha:VIBHAR_06933 hypothetical protein; cof family hydrolase 182811 8413004 Apar_0158 Atopobium parvulum DSM 20469 cof family hydrolase YP_003179185.1 182014 D 521095 CDS YP_003179186.1 257783969 8413005 183038..184099 1 NC_013203.1 KEGG: vsa:VSAL_I0829 N-acetylglucosamine repressor; hypothetical protein 184099 8413005 Apar_0159 Atopobium parvulum DSM 20469 hypothetical protein YP_003179186.1 183038 D 521095 CDS YP_003179187.1 257783970 8413006 184288..185589 1 NC_013203.1 KEGG: asu:Asuc_1063 anaerobic C4-dicarboxylate antiporter; hypothetical protein 185589 8413006 Apar_0160 Atopobium parvulum DSM 20469 hypothetical protein YP_003179187.1 184288 D 521095 CDS YP_003179188.1 257783971 8413007 185681..187828 1 NC_013203.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bpy:Bphyt_6536 5-oxoprolinase (ATP- hydrolyzing); hydantoinase/oxoprolinase 187828 8413007 Apar_0161 Atopobium parvulum DSM 20469 hydantoinase/oxoprolinase YP_003179188.1 185681 D 521095 CDS YP_003179189.1 257783972 8413008 187835..188488 1 NC_013203.1 hypothetical protein 188488 8413008 Apar_0162 Atopobium parvulum DSM 20469 hypothetical protein YP_003179189.1 187835 D 521095 CDS YP_003179190.1 257783973 8413009 188478..189857 1 NC_013203.1 KEGG: shl:Shal_3319 FAD dependent oxidoreductase; hypothetical protein 189857 8413009 Apar_0163 Atopobium parvulum DSM 20469 hypothetical protein YP_003179190.1 188478 D 521095 CDS YP_003179191.1 257783974 8413011 190158..191543 1 NC_013203.1 PFAM: protein of unknown function DUF214; KEGG: ban:BA5084 ABC transporter, permease protein; hypothetical protein 191543 8413011 Apar_0164 Atopobium parvulum DSM 20469 hypothetical protein YP_003179191.1 190158 D 521095 CDS YP_003179192.1 257783975 8413012 191706..192467 1 NC_013203.1 TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; KEGG: hap:HAPS_1298 ribonuclease PH; ribonuclease PH 192467 8413012 Apar_0165 Atopobium parvulum DSM 20469 ribonuclease PH YP_003179192.1 191706 D 521095 CDS YP_003179193.1 257783976 8413013 192470..193120 1 NC_013203.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: gsu:GSU1794 HAM1 protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 193120 8413013 Apar_0166 Atopobium parvulum DSM 20469 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_003179193.1 192470 D 521095 CDS YP_003179194.1 257783977 8413014 193275..194009 1 NC_013203.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: swd:Swoo_0943 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 194009 8413014 Apar_0167 Atopobium parvulum DSM 20469 glucosamine-6-phosphate isomerase YP_003179194.1 193275 D 521095 CDS YP_003179195.1 257783978 8413015 194242..194532 1 NC_013203.1 PFAM: protein of unknown function DUF1021; KEGG: bcu:BCAH820_0048 veg protein; hypothetical protein 194532 8413015 Apar_0168 Atopobium parvulum DSM 20469 hypothetical protein YP_003179195.1 194242 D 521095 CDS YP_003179196.1 257783979 8413016 194549..195451 1 NC_013203.1 PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rce:RC1_3179 4-diphosphocytidyl-2C-methyl-D- erythritol kinase; 4-(cytidine 5'-diphospho)-2-C-methyl-D- erythritol kinase 195451 8413016 Apar_0169 Atopobium parvulum DSM 20469 4-(cytidine 5'-diphospho)-2-C-methyl-D- erythritol kinase YP_003179196.1 194549 D 521095 CDS YP_003179197.1 257783980 8413018 196055..197524 1 NC_013203.1 PFAM: putative sugar-specific permease SgaT/UlaA; KEGG: spq:SPAB_00632 ascorbate-specific PTS system enzyme IIC; putative sugar-specific permease SgaT/UlaA 197524 8413018 Apar_0170 Atopobium parvulum DSM 20469 putative sugar-specific permease SgaT/UlaA YP_003179197.1 196055 D 521095 CDS YP_003179198.1 257783981 8413019 197690..197974 1 NC_013203.1 PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: stm:STM2343 putative cytoplasmic protein; PTS system lactose/cellobiose-specific transporter subunit IIB 197974 8413019 Apar_0171 Atopobium parvulum DSM 20469 PTS system lactose/cellobiose-specific transporter subunit IIB YP_003179198.1 197690 D 521095 CDS YP_003179199.1 257783982 8413020 198078..198899 1 NC_013203.1 PFAM: Transketolase domain protein; KEGG: transketolase domain protein ; K00615 transketolase; transketolase 198899 8413020 Apar_0172 Atopobium parvulum DSM 20469 transketolase YP_003179199.1 198078 D 521095 CDS YP_003179200.1 257783983 8413021 198901..199842 1 NC_013203.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: pca:Pcar_2719 transketolase, C-terminal subunit; transketolase 199842 8413021 Apar_0173 Atopobium parvulum DSM 20469 transketolase YP_003179200.1 198901 D 521095 CDS YP_003179201.1 257783984 8413022 complement(200277..201224) 1 NC_013203.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 201224 8413022 Apar_0174 Atopobium parvulum DSM 20469 3-hydroxybutyryl-CoA dehydrogenase YP_003179201.1 200277 R 521095 CDS YP_003179202.1 257783985 8413023 201563..201856 1 NC_013203.1 KEGG: rpe:RPE_1573 hypothetical protein; hypothetical protein 201856 8413023 Apar_0175 Atopobium parvulum DSM 20469 hypothetical protein YP_003179202.1 201563 D 521095 CDS YP_003179203.1 257783986 8413024 202008..204767 1 NC_013203.1 KEGG: prw:PsycPRwf_2393 type II restriction enzyme methylase subunits-like protein; type II restriction enzyme methylase subunits- like protein 204767 8413024 Apar_0176 Atopobium parvulum DSM 20469 type II restriction enzyme methylase subunits- like protein YP_003179203.1 202008 D 521095 CDS YP_003179204.1 257783987 8413025 complement(204941..206914) 1 NC_013203.1 KEGG: pha:PSHAb0021 putative orphan protein; hypothetical protein 206914 8413025 Apar_0177 Atopobium parvulum DSM 20469 hypothetical protein YP_003179204.1 204941 R 521095 CDS YP_003179205.1 257783988 8413026 207146..208333 1 NC_013203.1 KEGG: ppr:PBPRB0411 hypothetical protein; protein tyrosine/serine phosphatase 208333 8413026 Apar_0178 Atopobium parvulum DSM 20469 protein tyrosine/serine phosphatase YP_003179205.1 207146 D 521095 CDS YP_003179206.1 257783989 8413027 208482..208952 1 NC_013203.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vbsC; vicibactin acetylase protein; N-acetyltransferase GCN5 208952 8413027 Apar_0179 Atopobium parvulum DSM 20469 N-acetyltransferase GCN5 YP_003179206.1 208482 D 521095 CDS YP_003179207.1 257783990 8413028 208989..209516 1 NC_013203.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lpn:lpg1613 acetyltransferase; N-acetyltransferase GCN5 209516 8413028 Apar_0180 Atopobium parvulum DSM 20469 N-acetyltransferase GCN5 YP_003179207.1 208989 D 521095 CDS YP_003179208.1 257783991 8413029 209902..212400 1 NC_013203.1 KEGG: bha:BH0548 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: GCN5-related N-acetyltransferase; peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 212400 8413029 Apar_0181 Atopobium parvulum DSM 20469 glycoprotease family metalloendopeptidase YP_003179208.1 209902 D 521095 CDS YP_003179209.1 257783992 8413030 212411..214441 1 NC_013203.1 TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pca:Pcar_2216 NAD synthetase; NAD+ synthetase 214441 8413030 Apar_0182 Atopobium parvulum DSM 20469 NAD+ synthetase YP_003179209.1 212411 D 521095 CDS YP_003179210.1 257783993 8413031 214707..214997 1 NC_013203.1 PFAM: chaperonin Cpn10; KEGG: ppd:Ppro_2803 co-chaperonin GroES; chaperonin Cpn10 214997 8413031 Apar_0183 Atopobium parvulum DSM 20469 chaperonin Cpn10 YP_003179210.1 214707 D 521095 CDS YP_003179211.1 257783994 8413032 215060..216697 1 NC_013203.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: rso:RSc0642 chaperonin GroEL; chaperonin GroEL 216697 8413032 Apar_0184 Atopobium parvulum DSM 20469 chaperonin GroEL YP_003179211.1 215060 D 521095 CDS YP_003179212.1 257783995 8413033 217040..218425 1 NC_013203.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sit:TM1040_0396 4Fe-4S ferredoxin, iron- sulfur binding; 4Fe-4S ferredoxin 218425 8413033 Apar_0185 Atopobium parvulum DSM 20469 4Fe-4S ferredoxin YP_003179212.1 217040 D 521095 CDS YP_003179213.1 257783996 8413034 218518..219582 1 NC_013203.1 TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: dno:DNO_1325 GTP-binding protein; GTP-binding protein YchF 219582 8413034 Apar_0186 Atopobium parvulum DSM 20469 GTP-binding protein YchF YP_003179213.1 218518 D 521095 CDS YP_003179214.1 257783997 8413035 complement(219727..221418) 1 NC_013203.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bca:BCE_5306 LytR family transcription antiterminator; cell envelope-related transcriptional attenuator 221418 8413035 Apar_0187 Atopobium parvulum DSM 20469 cell envelope-related transcriptional attenuator YP_003179214.1 219727 R 521095 CDS YP_003179215.1 257783998 8413036 complement(221587..223113) 1 NC_013203.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein; surface protein from Gram-positive cocci anchor region; KEGG: bcr:BCAH187_E0033 collagen adhesion protein; LPXTG-motif cell wall anchor domain-containing protein 223113 8413036 Apar_0188 Atopobium parvulum DSM 20469 LPXTG-motif cell wall anchor domain-containing protein YP_003179215.1 221587 R 521095 CDS YP_003179216.1 257783999 8413037 223435..225024 1 NC_013203.1 TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; ExsB family protein; KEGG: bcu:BCAH820_0294 GMP synthase; GMP synthase 225024 8413037 Apar_0189 Atopobium parvulum DSM 20469 GMP synthase YP_003179216.1 223435 D 521095 CDS YP_003179217.1 257784000 8413038 complement(225189..226067) 1 NC_013203.1 KEGG: phage head-tail adaptor family protein; hypothetical protein 226067 8413038 Apar_0190 Atopobium parvulum DSM 20469 hypothetical protein YP_003179217.1 225189 R 521095 CDS YP_003179218.1 257784001 8413041 227354..230041 1 NC_013203.1 PFAM: SMC domain protein; PHP domain protein; KEGG: aeh:Mlg_1540 SMC domain-containing protein; SMC domain-containing protein 230041 8413041 Apar_0193 Atopobium parvulum DSM 20469 SMC domain-containing protein YP_003179218.1 227354 D 521095 CDS YP_003179219.1 257784002 8413042 complement(230772..231335) 1 NC_013203.1 hypothetical protein 231335 8413042 Apar_0194 Atopobium parvulum DSM 20469 hypothetical protein YP_003179219.1 230772 R 521095 CDS YP_003179220.1 257784003 8413044 complement(232534..233520) 1 NC_013203.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ade:Adeh_1687 tyrosine recombinase XerD subunit; integrase family protein 233520 8413044 Apar_0196 Atopobium parvulum DSM 20469 integrase family protein YP_003179220.1 232534 R 521095 CDS YP_003179221.1 257784004 8413045 complement(233616..236993) 1 NC_013203.1 PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; KEGG: amc:MADE_03609 type I site-specific restriction-modification system, R (restriction) subunit and related helicase; type III restriction protein res subunit 236993 8413045 Apar_0197 Atopobium parvulum DSM 20469 type III restriction protein res subunit YP_003179221.1 233616 R 521095 CDS YP_003179222.1 257784005 8413046 complement(237003..238163) 1 NC_013203.1 PFAM: restriction modification system DNA specificity domain; KEGG: neu:NE2496 restriction modification system, type I; restriction modification system DNA specificity domain-containing protein 238163 8413046 Apar_0198 Atopobium parvulum DSM 20469 restriction modification system DNA specificity domain-containing protein YP_003179222.1 237003 R 521095 CDS YP_003179223.1 257784006 8413047 complement(238156..239676) 1 NC_013203.1 PFAM: N-6 DNA methylase; KEGG: gur:Gura_2095 N-6 DNA methylase; N-6 DNA methylase 239676 8413047 Apar_0199 Atopobium parvulum DSM 20469 N-6 DNA methylase YP_003179223.1 238156 R 521095 CDS YP_003179224.1 257784007 8413048 complement(239719..240306) 1 NC_013203.1 KEGG: tdn:Suden_0941 restriction modification system DNA specificity subunit; hypothetical protein 240306 8413048 Apar_0200 Atopobium parvulum DSM 20469 hypothetical protein YP_003179224.1 239719 R 521095 CDS YP_003179225.1 257784008 8413049 240440..241822 1 NC_013203.1 hypothetical protein 241822 8413049 Apar_0201 Atopobium parvulum DSM 20469 hypothetical protein YP_003179225.1 240440 D 521095 CDS YP_003179226.1 257784009 8413050 complement(241993..242772) 1 NC_013203.1 hypothetical protein 242772 8413050 Apar_0202 Atopobium parvulum DSM 20469 hypothetical protein YP_003179226.1 241993 R 521095 CDS YP_003179227.1 257784010 8413052 243326..243988 1 NC_013203.1 hypothetical protein 243988 8413052 Apar_0204 Atopobium parvulum DSM 20469 hypothetical protein YP_003179227.1 243326 D 521095 CDS YP_003179228.1 257784011 8413053 243990..245051 1 NC_013203.1 KEGG: hypothetical protein; hypothetical protein 245051 8413053 Apar_0205 Atopobium parvulum DSM 20469 hypothetical protein YP_003179228.1 243990 D 521095 CDS YP_003179229.1 257784012 8413054 245052..245471 1 NC_013203.1 hypothetical protein 245471 8413054 Apar_0206 Atopobium parvulum DSM 20469 hypothetical protein YP_003179229.1 245052 D 521095 CDS YP_003179230.1 257784013 8413055 245669..246568 1 NC_013203.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: hpa:HPAG1_p002 hypothetical protein; filamentation induced by cAMP protein fic 246568 8413055 Apar_0207 Atopobium parvulum DSM 20469 filamentation induced by cAMP protein fic YP_003179230.1 245669 D 521095 CDS YP_003179231.1 257784014 8413056 246638..248467 1 NC_013203.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: sus:Acid_7303 glutamine--fructose-6-phosphate transaminase; glucosamine/fructose-6-phosphate aminotransferase 248467 8413056 Apar_0208 Atopobium parvulum DSM 20469 glucosamine/fructose-6-phosphate aminotransferase YP_003179231.1 246638 D 521095 CDS YP_003179232.1 257784015 8413057 248639..248977 1 NC_013203.1 PFAM: transcriptional regulator PadR family protein; KEGG: bcr:BCAH187_A3051 hypothetical protein; PadR-like family transcriptional regulator 248977 8413057 Apar_0209 Atopobium parvulum DSM 20469 PadR-like family transcriptional regulator YP_003179232.1 248639 D 521095 CDS YP_003179233.1 257784016 8413058 248980..249531 1 NC_013203.1 KEGG: bca:BCE_1074 hypothetical protein; hypothetical protein 249531 8413058 Apar_0210 Atopobium parvulum DSM 20469 hypothetical protein YP_003179233.1 248980 D 521095 CDS YP_003179234.1 257784017 8413059 250314..251861 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_0246 ABC transporter related; ABC transporter-like protein 251861 8413059 Apar_0211 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179234.1 250314 D 521095 CDS YP_003179235.1 257784018 8413060 complement(251933..253162) 1 NC_013203.1 KEGG: dal:Dalk_3047 protein of unknown function UPF0089; hypothetical protein 253162 8413060 Apar_0212 Atopobium parvulum DSM 20469 hypothetical protein YP_003179235.1 251933 R 521095 CDS YP_003179236.1 257784019 8413061 253497..253997 1 NC_013203.1 KEGG: noc:Noc_2817 S-isoprenylcysteine methyltransferase-like protein; Putative protein-S-isoprenylcysteine methyltransferase-like protein 253997 8413061 Apar_0213 Atopobium parvulum DSM 20469 Putative protein-S-isoprenylcysteine methyltransferase-like protein YP_003179236.1 253497 D 521095 CDS YP_003179237.1 257784020 8413062 complement(254105..254572) 1 NC_013203.1 KEGG: pca:Pcar_1078 putative flavodoxin; putative flavodoxin 254572 8413062 Apar_0214 Atopobium parvulum DSM 20469 putative flavodoxin YP_003179237.1 254105 R 521095 CDS YP_003179238.1 257784021 8413063 complement(254575..255315) 1 NC_013203.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: apa:APP7_1823 tetracycline repressor protein class B from transposon Tn10; TetR family transcriptional regulator 255315 8413063 Apar_0215 Atopobium parvulum DSM 20469 TetR family transcriptional regulator YP_003179238.1 254575 R 521095 CDS YP_003179239.1 257784022 8413064 complement(255332..256105) 1 NC_013203.1 PFAM: ABC-2 type transporter; KEGG: sus:Acid_1494 ABC-2 type transporter; ABC-2 type transporter 256105 8413064 Apar_0216 Atopobium parvulum DSM 20469 ABC-2 type transporter YP_003179239.1 255332 R 521095 CDS YP_003179240.1 257784023 8413065 complement(256092..257024) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0215 ABC transporter-related protein; ABC transporter-like protein 257024 8413065 Apar_0217 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179240.1 256092 R 521095 CDS YP_003179241.1 257784024 8413066 complement(257214..257831) 1 NC_013203.1 PFAM: peptidase S51 dipeptidase E; KEGG: Clan PC(S), family S51, peptidase E-like serine peptidase ; K05995 dipeptidase E; peptidase S51 dipeptidase E 257831 8413066 Apar_0218 Atopobium parvulum DSM 20469 peptidase S51 dipeptidase E YP_003179241.1 257214 R 521095 CDS YP_003179242.1 257784025 8413067 complement(257917..259119) 1 NC_013203.1 KEGG: sun:SUN_0885 hypothetical protein; hypothetical protein 259119 8413067 Apar_0219 Atopobium parvulum DSM 20469 hypothetical protein YP_003179242.1 257917 R 521095 CDS YP_003179243.1 257784026 8413068 259396..259785 1 NC_013203.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bam:Bamb_5788 GntR family transcriptional regulator; GntR family transcriptional regulator 259785 8413068 Apar_0220 Atopobium parvulum DSM 20469 GntR family transcriptional regulator YP_003179243.1 259396 D 521095 CDS YP_003179244.1 257784027 8413069 259801..260922 1 NC_013203.1 PFAM: protein of unknown function DUF1648; hypothetical protein 260922 8413069 Apar_0221 Atopobium parvulum DSM 20469 hypothetical protein YP_003179244.1 259801 D 521095 CDS YP_003179245.1 257784028 8413070 261120..261401 1 NC_013203.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: nmu:Nmul_A2034 RelB antitoxin; RelB/DinJ family addiction module antitoxin 261401 8413070 Apar_0222 Atopobium parvulum DSM 20469 RelB/DinJ family addiction module antitoxin YP_003179245.1 261120 D 521095 CDS YP_003179246.1 257784029 8413071 261404..261682 1 NC_013203.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: lpc:LPC_2177 hypothetical protein; RelE/StbE family addiction module toxin 261682 8413071 Apar_0223 Atopobium parvulum DSM 20469 RelE/StbE family addiction module toxin YP_003179246.1 261404 D 521095 CDS YP_003179247.1 257784030 8413072 complement(261742..262245) 1 NC_013203.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bca:BCE_1071 hypothetical protein; BadM/Rrf2 family transcriptional regulator 262245 8413072 Apar_0224 Atopobium parvulum DSM 20469 BadM/Rrf2 family transcriptional regulator YP_003179247.1 261742 R 521095 CDS YP_003179248.1 257784031 8413073 262382..262756 1 NC_013203.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: dvm:DvMF_2023 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 262756 8413073 Apar_0225 Atopobium parvulum DSM 20469 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_003179248.1 262382 D 521095 CDS YP_003179249.1 257784032 8413074 262867..263319 1 NC_013203.1 PFAM: isochorismatase hydrolase; KEGG: gbm:Gbem_0508 isochorismatase hydrolase; isochorismatase hydrolase 263319 8413074 Apar_0226 Atopobium parvulum DSM 20469 isochorismatase hydrolase YP_003179249.1 262867 D 521095 CDS YP_003179250.1 257784033 8413075 263372..263818 1 NC_013203.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 263818 8413075 Apar_0227 Atopobium parvulum DSM 20469 flavodoxin YP_003179250.1 263372 D 521095 CDS YP_003179251.1 257784034 8413076 263971..265368 1 NC_013203.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: swi:Swit_2151 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 265368 8413076 Apar_0228 Atopobium parvulum DSM 20469 RND family efflux transporter MFP subunit YP_003179251.1 263971 D 521095 CDS YP_003179252.1 257784035 8413077 265378..266172 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_7937 ABC transporter related; ABC transporter-like protein 266172 8413077 Apar_0229 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179252.1 265378 D 521095 CDS YP_003179253.1 257784036 8413078 266169..267377 1 NC_013203.1 PFAM: protein of unknown function DUF214; KEGG: rce:RC1_1640 macrolide-specific ABC-type efflux carrier; hypothetical protein 267377 8413078 Apar_0230 Atopobium parvulum DSM 20469 hypothetical protein YP_003179253.1 266169 D 521095 CDS YP_003179254.1 257784037 8413079 complement(267405..268238) 1 NC_013203.1 PFAM: protein of unknown function DUF364; KEGG: ccv:CCV52592_1453 sigma 54 modulation protein/ribosomal protein S30EA; hypothetical protein 268238 8413079 Apar_0231 Atopobium parvulum DSM 20469 hypothetical protein YP_003179254.1 267405 R 521095 CDS YP_003179255.1 257784038 8413080 268497..269108 1 NC_013203.1 KEGG: asu:Asuc_2076 hypothetical protein; hypothetical protein 269108 8413080 Apar_0232 Atopobium parvulum DSM 20469 hypothetical protein YP_003179255.1 268497 D 521095 CDS YP_003179256.1 257784039 8413081 complement(269150..270412) 1 NC_013203.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mrd:Mrad2831_2432 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; peptidase M20 270412 8413081 Apar_0233 Atopobium parvulum DSM 20469 peptidase M20 YP_003179256.1 269150 R 521095 CDS YP_003179257.1 257784040 8413082 270610..272073 1 NC_013203.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: rme:Rmet_3725 uracil-xanthine permease; uracil-xanthine permease 272073 8413082 Apar_0234 Atopobium parvulum DSM 20469 uracil-xanthine permease YP_003179257.1 270610 D 521095 CDS YP_003179258.1 257784041 8413083 complement(272177..272824) 1 NC_013203.1 PFAM: YheO domain protein; KEGG: dds:Ddes_2335 YheO domain protein; YheO domain-containing protein 272824 8413083 Apar_0235 Atopobium parvulum DSM 20469 YheO domain-containing protein YP_003179258.1 272177 R 521095 CDS YP_003179259.1 257784042 8413084 273176..274531 1 NC_013203.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; putative chlorohydrolase/aminohydrolase 274531 8413084 Apar_0236 Atopobium parvulum DSM 20469 putative chlorohydrolase/aminohydrolase YP_003179259.1 273176 D 521095 CDS YP_003179260.1 257784043 8413085 274659..277652 1 NC_013203.1 with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; putative selenate reductase subunit YgfK 277652 8413085 Apar_0237 Atopobium parvulum DSM 20469 putative selenate reductase subunit YgfK YP_003179260.1 274659 D 521095 CDS YP_003179261.1 257784044 8413086 277832..280603 1 NC_013203.1 TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: mag:amb1483 aldehyde oxidoreductase; selenium-dependent molybdenum hydroxylase 1 280603 8413086 Apar_0238 Atopobium parvulum DSM 20469 selenium-dependent molybdenum hydroxylase 1 YP_003179261.1 277832 D 521095 CDS YP_003179262.1 257784045 8413087 280803..282029 1 NC_013203.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 282029 8413087 Apar_0239 Atopobium parvulum DSM 20469 diaminopropionate ammonia-lyase YP_003179262.1 280803 D 521095 CDS YP_003179263.1 257784046 8413088 282264..283646 1 NC_013203.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 283646 8413088 Apar_0240 Atopobium parvulum DSM 20469 peptidase YP_003179263.1 282264 D 521095 CDS YP_003179264.1 257784047 8413089 283698..284900 1 NC_013203.1 TIGRFAM: carbamoyltransferase YgeW; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: aha:AHA_2161 hypothetical protein; aspartate/ornithine carbamoyltransferase family protein 284900 8413089 Apar_0241 Atopobium parvulum DSM 20469 aspartate/ornithine carbamoyltransferase family protein YP_003179264.1 283698 D 521095 CDS YP_003179265.1 257784048 8413090 285038..285979 1 NC_013203.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 285979 8413090 Apar_0242 Atopobium parvulum DSM 20469 carbamate kinase YP_003179265.1 285038 D 521095 CDS YP_003179266.1 257784049 8413091 286047..286697 1 NC_013203.1 KEGG: gme:Gmet_2140 molybdenum cofactor biosynthesis protein; MobA-like protein 286697 8413091 Apar_0243 Atopobium parvulum DSM 20469 MobA-like protein YP_003179266.1 286047 D 521095 CDS YP_003179267.1 257784050 8413092 286697..288052 1 NC_013203.1 KEGG: scl:sce6399 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; dihydropyrimidinase 288052 8413092 Apar_0244 Atopobium parvulum DSM 20469 dihydropyrimidinase YP_003179267.1 286697 D 521095 CDS YP_003179268.1 257784051 8413093 288145..288525 1 NC_013203.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: dal:Dalk_4660 endoribonuclease L-PSP; endoribonuclease L-PSP 288525 8413093 Apar_0245 Atopobium parvulum DSM 20469 endoribonuclease L-PSP YP_003179268.1 288145 D 521095 CDS YP_003179269.1 257784052 8413094 288739..289371 1 NC_013203.1 hypothetical protein 289371 8413094 Apar_0246 Atopobium parvulum DSM 20469 hypothetical protein YP_003179269.1 288739 D 521095 CDS YP_003179270.1 257784053 8413095 complement(289337..290041) 1 NC_013203.1 KEGG: hypothetical protein; hypothetical protein 290041 8413095 Apar_0247 Atopobium parvulum DSM 20469 hypothetical protein YP_003179270.1 289337 R 521095 CDS YP_003179271.1 257784054 8413096 290141..290752 1 NC_013203.1 PFAM: SirA family protein; KEGG: sat:SYN_01072 putative cytoplasmic protein; SirA family protein 290752 8413096 Apar_0248 Atopobium parvulum DSM 20469 SirA family protein YP_003179271.1 290141 D 521095 CDS YP_003179272.1 257784055 8413097 290763..291941 1 NC_013203.1 PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ppd:Ppro_2495 cysteine desulfurase family protein; cysteine desulfurase 291941 8413097 Apar_0249 Atopobium parvulum DSM 20469 cysteine desulfurase YP_003179272.1 290763 D 521095 CDS YP_003179273.1 257784056 8413099 292237..293043 1 NC_013203.1 TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: sbo:SBO_3109 putative synthase; selenium-dependent molybdenum hydroxylase system protein 293043 8413099 Apar_0251 Atopobium parvulum DSM 20469 selenium-dependent molybdenum hydroxylase system protein YP_003179273.1 292237 D 521095 CDS YP_003179274.1 257784057 8413100 293046..294104 1 NC_013203.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: ppd:Ppro_1707 selenide, water dikinase; selenide, water dikinase 294104 8413100 Apar_0252 Atopobium parvulum DSM 20469 selenide, water dikinase YP_003179274.1 293046 D 521095 CDS YP_003179275.1 257784058 8413101 294157..295170 1 NC_013203.1 PFAM: protein of unknown function DUF182; KEGG: sfu:Sfum_1316 protein of unknown function DUF182; hypothetical protein 295170 8413101 Apar_0253 Atopobium parvulum DSM 20469 hypothetical protein YP_003179275.1 294157 D 521095 CDS YP_003179276.1 257784059 8413102 295274..296149 1 NC_013203.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU33380 hypothetical protein; molybdenum ABC transporter periplasmic molybdate-binding protein 296149 8413102 Apar_0254 Atopobium parvulum DSM 20469 molybdenum ABC transporter periplasmic molybdate-binding protein YP_003179276.1 295274 D 521095 CDS YP_003179277.1 257784060 8413103 296182..296871 1 NC_013203.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RS05467 hypothetical protein; molybdate ABC transporter inner membrane subunit 296871 8413103 Apar_0255 Atopobium parvulum DSM 20469 molybdate ABC transporter inner membrane subunit YP_003179277.1 296182 D 521095 CDS YP_003179278.1 257784061 8413104 296874..297977 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shl:Shal_0899 ABC transporter related; ABC transporter-like protein 297977 8413104 Apar_0256 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179278.1 296874 D 521095 CDS YP_003179279.1 257784062 8413105 297970..298917 1 NC_013203.1 KEGG: sat:SYN_00381 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 298917 8413105 Apar_0257 Atopobium parvulum DSM 20469 molybdenum cofactor biosynthesis protein A YP_003179279.1 297970 D 521095 CDS YP_003179280.1 257784063 8413106 298919..299398 1 NC_013203.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: hip:CGSHiEE_03685 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 299398 8413106 Apar_0258 Atopobium parvulum DSM 20469 molybdenum cofactor biosynthesis protein C YP_003179280.1 298919 D 521095 CDS YP_003179281.1 257784064 8413107 299395..299883 1 NC_013203.1 PFAM: MOSC domain containing protein; KEGG: gme:Gmet_0302 MOSC; MOSC domain-containing protein 299883 8413107 Apar_0259 Atopobium parvulum DSM 20469 MOSC domain-containing protein YP_003179281.1 299395 D 521095 CDS YP_003179282.1 257784065 8413108 299870..300904 1 NC_013203.1 PFAM: molybdopterin binding domain; KEGG: dds:Ddes_1824 molybdopterin binding domain protein; molybdopterin binding domain-containing protein 300904 8413108 Apar_0260 Atopobium parvulum DSM 20469 molybdopterin binding domain-containing protein YP_003179282.1 299870 D 521095 CDS YP_003179283.1 257784066 8413109 300907..301416 1 NC_013203.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: sfu:Sfum_0070 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein 301416 8413109 Apar_0261 Atopobium parvulum DSM 20469 molybdenum cofactor synthesis domain-containing protein YP_003179283.1 300907 D 521095 CDS YP_003179284.1 257784067 8413110 complement(301485..302696) 1 NC_013203.1 PFAM: NADPH-dependent FMN reductase; KEGG: dar:Daro_2073 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 302696 8413110 Apar_0262 Atopobium parvulum DSM 20469 NADPH-dependent FMN reductase YP_003179284.1 301485 R 521095 CDS YP_003179285.1 257784068 8413111 complement(302717..303325) 1 NC_013203.1 PFAM: NADPH-dependent FMN reductase; KEGG: dar:Daro_2073 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 303325 8413111 Apar_0263 Atopobium parvulum DSM 20469 NADPH-dependent FMN reductase YP_003179285.1 302717 R 521095 CDS YP_003179286.1 257784069 8413112 complement(303343..304305) 1 NC_013203.1 PFAM: ApbE family lipoprotein; KEGG: eta:ETA_19250 putative thiamine biosynthesis protein; ApbE family lipoprotein 304305 8413112 Apar_0264 Atopobium parvulum DSM 20469 ApbE family lipoprotein YP_003179286.1 303343 R 521095 CDS YP_003179287.1 257784070 8413113 304594..305370 1 NC_013203.1 hypothetical protein 305370 8413113 Apar_0265 Atopobium parvulum DSM 20469 hypothetical protein YP_003179287.1 304594 D 521095 CDS YP_003179288.1 257784071 8413114 complement(305471..309523) 1 NC_013203.1 TIGRFAM: cell wall/surface repeat protein; PFAM: surface protein from Gram-positive cocci anchor region; KEGG: similar to zymogen granule membrane glycoprotein 2; cell wall/surface repeat-containing protein 309523 8413114 Apar_0266 Atopobium parvulum DSM 20469 cell wall/surface repeat-containing protein YP_003179288.1 305471 R 521095 CDS YP_003179289.1 257784072 8413115 310048..310692 1 NC_013203.1 KEGG: bcb:BCB4264_A2172 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 310692 8413115 Apar_0267 Atopobium parvulum DSM 20469 metal dependent phosphohydrolase YP_003179289.1 310048 D 521095 CDS YP_003179290.1 257784073 8413116 310794..311921 1 NC_013203.1 PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; KEGG: asu:Asuc_0713 methionine synthase vitamin-B12 independent; Methionine synthase vitamin-B12 independent 311921 8413116 Apar_0268 Atopobium parvulum DSM 20469 Methionine synthase vitamin-B12 independent YP_003179290.1 310794 D 521095 CDS YP_003179291.1 257784074 8413117 312054..313046 1 NC_013203.1 KEGG: bha:BH1815 hypothetical protein; transcriptional regulator protein-like protein 313046 8413117 Apar_0269 Atopobium parvulum DSM 20469 transcriptional regulator protein-like protein YP_003179291.1 312054 D 521095 CDS YP_003179292.1 257784075 8413118 complement(313085..313408) 1 NC_013203.1 KEGG: gsu:GSU0050 hypothetical protein; hypothetical protein 313408 8413118 Apar_0270 Atopobium parvulum DSM 20469 hypothetical protein YP_003179292.1 313085 R 521095 CDS YP_003179293.1 257784076 8413119 313527..314075 1 NC_013203.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt2135 putative acetyltransferase; N-acetyltransferase GCN5 314075 8413119 Apar_0271 Atopobium parvulum DSM 20469 N-acetyltransferase GCN5 YP_003179293.1 313527 D 521095 CDS YP_003179294.1 257784077 8413120 314280..316016 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: hiq:CGSHiGG_06595 ABC transporter ATP-binding protein; ABC transporter-like protein 316016 8413120 Apar_0272 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179294.1 314280 D 521095 CDS YP_003179295.1 257784078 8413121 316016..317716 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hit:NTHI0785 ABC transporter ATP-binding protein; ABC transporter-like protein 317716 8413121 Apar_0273 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179295.1 316016 D 521095 CDS YP_003179296.1 257784079 8413122 317716..318033 1 NC_013203.1 KEGG: vfi:VF_A0934 hypothetical protein; hypothetical protein 318033 8413122 Apar_0274 Atopobium parvulum DSM 20469 hypothetical protein YP_003179296.1 317716 D 521095 CDS YP_003179297.1 257784080 8413123 318174..318833 1 NC_013203.1 KEGG: mpo:Mpop_2236 hypothetical protein; hypothetical protein 318833 8413123 Apar_0275 Atopobium parvulum DSM 20469 hypothetical protein YP_003179297.1 318174 D 521095 CDS YP_003179298.1 257784081 8413124 319011..319232 1 NC_013203.1 hypothetical protein 319232 8413124 Apar_0276 Atopobium parvulum DSM 20469 hypothetical protein YP_003179298.1 319011 D 521095 CDS YP_003179299.1 257784082 8413125 319237..320535 1 NC_013203.1 KEGG: pde:Pden_2104 major facilitator superfamily MFS_1; hypothetical protein 320535 8413125 Apar_0277 Atopobium parvulum DSM 20469 hypothetical protein YP_003179299.1 319237 D 521095 CDS YP_003179300.1 257784083 8413126 320528..320905 1 NC_013203.1 hypothetical protein 320905 8413126 Apar_0278 Atopobium parvulum DSM 20469 hypothetical protein YP_003179300.1 320528 D 521095 CDS YP_003179301.1 257784084 8413127 complement(320976..321116) 1 NC_013203.1 hypothetical protein 321116 8413127 Apar_0279 Atopobium parvulum DSM 20469 hypothetical protein YP_003179301.1 320976 R 521095 CDS YP_003179302.1 257784085 8413128 complement(321130..321966) 1 NC_013203.1 PFAM: ABC-3 protein; transport system permease protein; KEGG: rpb:RPB_3405 hypothetical protein; ABC-3 protein 321966 8413128 Apar_0280 Atopobium parvulum DSM 20469 ABC-3 protein YP_003179302.1 321130 R 521095 CDS YP_003179303.1 257784086 8413129 complement(321959..322711) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmr:PMI1026 iron ABC transporter, ATP-binding protein; ABC transporter-like protein 322711 8413129 Apar_0281 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179303.1 321959 R 521095 CDS YP_003179304.1 257784087 8413130 complement(322719..323759) 1 NC_013203.1 PFAM: periplasmic solute binding protein; KEGG: rle:RL3884 iron ABC transporter substrate binding protein; periplasmic solute binding protein 323759 8413130 Apar_0282 Atopobium parvulum DSM 20469 periplasmic solute binding protein YP_003179304.1 322719 R 521095 CDS YP_003179305.1 257784088 8413131 324104..324856 1 NC_013203.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mno:Mnod_3070 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 324856 8413131 Apar_0283 Atopobium parvulum DSM 20469 short-chain dehydrogenase/reductase SDR YP_003179305.1 324104 D 521095 CDS YP_003179306.1 257784089 8413132 324867..325862 1 NC_013203.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 325862 8413132 Apar_0284 Atopobium parvulum DSM 20469 2-keto-3-deoxygluconate permease YP_003179306.1 324867 D 521095 CDS YP_003179307.1 257784090 8413133 complement(325982..326791) 1 NC_013203.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0989 AraC/XylS family transcriptional regulator; AraC family transcriptional regulator 326791 8413133 Apar_0285 Atopobium parvulum DSM 20469 AraC family transcriptional regulator YP_003179307.1 325982 R 521095 CDS YP_003179308.1 257784091 8413134 327164..329203 1 NC_013203.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: hhe:HH0112 putative inner membrane protein translocase component YidC; 60 kDa inner membrane insertion protein 329203 8413134 Apar_0286 Atopobium parvulum DSM 20469 60 kDa inner membrane insertion protein YP_003179308.1 327164 D 521095 CDS YP_003179309.1 257784092 8413135 329196..331346 1 NC_013203.1 hypothetical protein 331346 8413135 Apar_0287 Atopobium parvulum DSM 20469 hypothetical protein YP_003179309.1 329196 D 521095 CDS YP_003179310.1 257784093 8413136 complement(331500..333137) 1 NC_013203.1 KEGG: hypothetical protein; hypothetical protein 333137 8413136 Apar_0288 Atopobium parvulum DSM 20469 hypothetical protein YP_003179310.1 331500 R 521095 CDS YP_003179311.1 257784094 8413137 333282..334685 1 NC_013203.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ccs:CCNA_02240 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 334685 8413137 Apar_0289 Atopobium parvulum DSM 20469 glycerophosphoryl diester phosphodiesterase YP_003179311.1 333282 D 521095 CDS YP_003179312.1 257784095 8413138 334856..336751 1 NC_013203.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bcu:BCAH820_0652 heavy metal-transporting ATPase; heavy metal translocating P-type ATPase 336751 8413138 Apar_0290 Atopobium parvulum DSM 20469 heavy metal translocating P-type ATPase YP_003179312.1 334856 D 521095 CDS YP_003179313.1 257784096 8413139 complement(336828..337655) 1 NC_013203.1 PFAM: putative methyltransferase; KEGG: bcy:Bcer98_3362 tRNA (guanine-N(7))- methyltransferase; putative methyltransferase 337655 8413139 Apar_0291 Atopobium parvulum DSM 20469 putative methyltransferase YP_003179313.1 336828 R 521095 CDS YP_003179314.1 257784097 8413140 complement(337692..338309) 1 NC_013203.1 KEGG: ppd:Ppro_1070 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 338309 8413140 Apar_0292 Atopobium parvulum DSM 20469 metal dependent phosphohydrolase YP_003179314.1 337692 R 521095 CDS YP_003179315.1 257784098 8413141 338589..339836 1 NC_013203.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: swi:Swit_0681 amidohydrolase; amidohydrolase 339836 8413141 Apar_0293 Atopobium parvulum DSM 20469 amidohydrolase YP_003179315.1 338589 D 521095 CDS YP_003179316.1 257784099 8413142 339962..341107 1 NC_013203.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bsu:BSU03360 hypothetical protein; cobalamin synthesis protein P47K 341107 8413142 Apar_0294 Atopobium parvulum DSM 20469 cobalamin synthesis protein P47K YP_003179316.1 339962 D 521095 CDS YP_003179317.1 257784100 8413143 341190..342041 1 NC_013203.1 PFAM: Silent information regulator protein Sir2; KEGG: cvi:CV_0294 NAD-dependent deacetylase; silent information regulator protein Sir2 342041 8413143 Apar_0295 Atopobium parvulum DSM 20469 silent information regulator protein Sir2 YP_003179317.1 341190 D 521095 CDS YP_003179318.1 257784101 8413144 complement(342146..343813) 1 NC_013203.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 343813 8413144 Apar_0296 Atopobium parvulum DSM 20469 putative manganese-dependent inorganic pyrophosphatase YP_003179318.1 342146 R 521095 CDS YP_003179319.1 257784102 8413145 344065..344811 1 NC_013203.1 PFAM: MORN repeat-containing protein; SMART: MORN repeat-containing protein; KEGG: sil:SPO0425 MORN repeat-containing protein; MORN repeat-containing protein 344811 8413145 Apar_0297 Atopobium parvulum DSM 20469 MORN repeat-containing protein YP_003179319.1 344065 D 521095 CDS YP_003179320.1 257784103 8413146 344801..346612 1 NC_013203.1 PFAM: acyltransferase 3; KEGG: bsu:BSU27140 hypothetical protein; acyltransferase 3 346612 8413146 Apar_0298 Atopobium parvulum DSM 20469 acyltransferase 3 YP_003179320.1 344801 D 521095 CDS YP_003179321.1 257784104 8413147 complement(346846..347112) 1 NC_013203.1 hypothetical protein 347112 8413147 Apar_0299 Atopobium parvulum DSM 20469 hypothetical protein YP_003179321.1 346846 R 521095 CDS YP_003179322.1 257784105 8413148 347220..348899 1 NC_013203.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 348899 8413148 Apar_0300 Atopobium parvulum DSM 20469 putative ABC transporter ATP-binding protein YP_003179322.1 347220 D 521095 CDS YP_003179323.1 257784106 8413149 349067..349582 1 NC_013203.1 PFAM: Ferritin Dps family protein; KEGG: gbm:Gbem_2519 ferritin Dps family protein; ferritin Dps family protein 349582 8413149 Apar_0301 Atopobium parvulum DSM 20469 ferritin Dps family protein YP_003179323.1 349067 D 521095 CDS YP_003179324.1 257784107 8413150 complement(349598..350503) 1 NC_013203.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcy:Bcer98_0850 hypothetical protein; hypothetical protein 350503 8413150 Apar_0302 Atopobium parvulum DSM 20469 hypothetical protein YP_003179324.1 349598 R 521095 CDS YP_003179325.1 257784108 8413151 complement(350507..351529) 1 NC_013203.1 TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; KEGG: bsu:BSU23580 L-asparaginase; type I L-asparaginase 351529 8413151 Apar_0303 Atopobium parvulum DSM 20469 type I L-asparaginase YP_003179325.1 350507 R 521095 CDS YP_003179326.1 257784109 8413152 351680..352153 1 NC_013203.1 hypothetical protein 352153 8413152 Apar_0304 Atopobium parvulum DSM 20469 hypothetical protein YP_003179326.1 351680 D 521095 CDS YP_003179327.1 257784110 8413153 complement(352235..353197) 1 NC_013203.1 PFAM: glycoside hydrolase family 25; KEGG: mlo:mlr7748 lysozyme precursor; glycoside hydrolase family protein 353197 8413153 Apar_0305 Atopobium parvulum DSM 20469 glycoside hydrolase family protein YP_003179327.1 352235 R 521095 CDS YP_003179328.1 257784111 8413154 complement(353194..354675) 1 NC_013203.1 PFAM: Domain of unknown function DUF1846; KEGG: ATP-dependent Zn protease; hypothetical protein 354675 8413154 Apar_0306 Atopobium parvulum DSM 20469 hypothetical protein YP_003179328.1 353194 R 521095 CDS YP_003179329.1 257784112 8413155 354780..355229 1 NC_013203.1 hypothetical protein 355229 8413155 Apar_0307 Atopobium parvulum DSM 20469 hypothetical protein YP_003179329.1 354780 D 521095 CDS YP_003179330.1 257784113 8413156 complement(355311..355751) 1 NC_013203.1 PFAM: protein of unknown function UPF0099; KEGG: CG1307; K04794 peptidyl-tRNA hydrolase, PTH2 family; hypothetical protein 355751 8413156 Apar_0308 Atopobium parvulum DSM 20469 hypothetical protein YP_003179330.1 355311 R 521095 CDS YP_003179331.1 257784114 8413157 355970..356458 1 NC_013203.1 PFAM: peptidase A24A prepilin type IV; KEGG: sal:Sala_1131 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 356458 8413157 Apar_0309 Atopobium parvulum DSM 20469 peptidase A24A prepilin type IV YP_003179331.1 355970 D 521095 CDS YP_003179332.1 257784115 8413158 357127..357546 1 NC_013203.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 357546 8413158 Apar_0310 Atopobium parvulum DSM 20469 helix-turn-helix domain-containing protein YP_003179332.1 357127 D 521095 CDS YP_003179333.1 257784116 8413159 357656..357904 1 NC_013203.1 hypothetical protein 357904 8413159 Apar_0311 Atopobium parvulum DSM 20469 hypothetical protein YP_003179333.1 357656 D 521095 CDS YP_003179334.1 257784117 8413160 358149..358769 1 NC_013203.1 PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor; TetR family transcriptional regulator 358769 8413160 Apar_0312 Atopobium parvulum DSM 20469 TetR family transcriptional regulator YP_003179334.1 358149 D 521095 CDS YP_003179335.1 257784118 8413161 358856..359464 1 NC_013203.1 hypothetical protein 359464 8413161 Apar_0313 Atopobium parvulum DSM 20469 hypothetical protein YP_003179335.1 358856 D 521095 CDS YP_003179336.1 257784119 8413162 359642..360652 1 NC_013203.1 KEGG: bsu:BSU35790 mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; mannose-6-phosphate isomerase 360652 8413162 Apar_0314 Atopobium parvulum DSM 20469 mannose-6-phosphate isomerase YP_003179336.1 359642 D 521095 CDS YP_003179337.1 257784120 8413163 360740..361909 1 NC_013203.1 KEGG: pin:Ping_2848 hemagglutinin/hemolysin-related protein; hypothetical protein 361909 8413163 Apar_0315 Atopobium parvulum DSM 20469 hypothetical protein YP_003179337.1 360740 D 521095 CDS YP_003179338.1 257784121 8413164 complement(362032..362481) 1 NC_013203.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: ppd:Ppro_1689 large conductance mechanosensitive channel protein; large conductance mechanosensitive channel protein 362481 8413164 Apar_0316 Atopobium parvulum DSM 20469 large conductance mechanosensitive channel protein YP_003179338.1 362032 R 521095 CDS YP_003179339.1 257784122 8413165 complement(362543..364099) 1 NC_013203.1 PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: bsu:BSU22080 hypothetical protein; Carboxypeptidase Taq 364099 8413165 Apar_0317 Atopobium parvulum DSM 20469 Carboxypeptidase Taq YP_003179339.1 362543 R 521095 CDS YP_003179340.1 257784123 8413166 364294..365592 1 NC_013203.1 PFAM: aminotransferase class I and II; KEGG: mxa:MXAN_0212 aminotransferase, class I and II family protein; GntR family transcriptional regulator 365592 8413166 Apar_0318 Atopobium parvulum DSM 20469 GntR family transcriptional regulator YP_003179340.1 364294 D 521095 CDS YP_003179341.1 257784124 8413167 365595..366596 1 NC_013203.1 PFAM: D-alanine--D-alanine ligase domain protein; KEGG: abo:ABO_0600 D-alanine-D-alanine ligase B; D-alanine--D-alanine ligase 366596 8413167 Apar_0319 Atopobium parvulum DSM 20469 D-alanine--D-alanine ligase YP_003179341.1 365595 D 521095 CDS YP_003179342.1 257784125 8413168 366605..367573 1 NC_013203.1 PFAM: ROK family protein; KEGG: bcr:BCAH187_A4396 glucokinase; ROK family protein 367573 8413168 Apar_0320 Atopobium parvulum DSM 20469 ROK family protein YP_003179342.1 366605 D 521095 CDS YP_003179343.1 257784126 8413169 367770..369275 1 NC_013203.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; KEGG: stm:STM3255 putative phosphotransferase system fructose-specific component IIB; PTS system fructose subfamily transporter subunit IIC 369275 8413169 Apar_0321 Atopobium parvulum DSM 20469 PTS system fructose subfamily transporter subunit IIC YP_003179343.1 367770 D 521095 CDS YP_003179344.1 257784127 8413170 369447..370364 1 NC_013203.1 KEGG: sek:SSPA2915 possible carbohydrate kinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 370364 8413170 Apar_0322 Atopobium parvulum DSM 20469 1-phosphofructokinase YP_003179344.1 369447 D 521095 CDS YP_003179345.1 257784128 8413171 370591..371388 1 NC_013203.1 PFAM: protein of unknown function DUF28; KEGG: jan:Jann_3380 hypothetical protein; hypothetical protein 371388 8413171 Apar_0323 Atopobium parvulum DSM 20469 hypothetical protein YP_003179345.1 370591 D 521095 CDS YP_003179346.1 257784129 8413172 complement(371955..372719) 1 NC_013203.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: hap:HAPS_0195 transcriptional repressor AgaR/DNA-binding transcriptional dual regulator; DeoR family transcriptional regulator 372719 8413172 Apar_0324 Atopobium parvulum DSM 20469 DeoR family transcriptional regulator YP_003179346.1 371955 R 521095 CDS YP_003179347.1 257784130 8413173 373372..373830 1 NC_013203.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pin:Ping_2057 putative PTS IIA-like nitrogen- regulatory protein PtsN; putative PTS IIA-like nitrogen-regulatory protein PtsN 373830 8413173 Apar_0325 Atopobium parvulum DSM 20469 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_003179347.1 373372 D 521095 CDS YP_003179348.1 257784131 8413174 373933..375444 1 NC_013203.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 375444 ulaA 8413174 ulaA Atopobium parvulum DSM 20469 PTS system ascorbate-specific transporter subunit IIC YP_003179348.1 373933 D 521095 CDS YP_003179349.1 257784132 8413175 375610..375918 1 NC_013203.1 PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: vsa:VSAL_II0823 PTS system, lactose/cellobiose specific IIB subunit; PTS system lactose/cellobiose-specific transporter subunit IIB 375918 8413175 Apar_0327 Atopobium parvulum DSM 20469 PTS system lactose/cellobiose-specific transporter subunit IIB YP_003179349.1 375610 D 521095 CDS YP_003179350.1 257784133 8413176 375948..377003 1 NC_013203.1 PFAM: FG-GAP repeat protein; FG-GAP repeat-containing protein 377003 8413176 Apar_0328 Atopobium parvulum DSM 20469 FG-GAP repeat-containing protein YP_003179350.1 375948 D 521095 CDS YP_003179351.1 257784134 8413177 377127..378245 1 NC_013203.1 KEGG: efe:EFER_4245 putative L-ascorbate 6- phosphate lactonase; putative L-ascorbate 6-phosphate lactonase 378245 8413177 Apar_0329 Atopobium parvulum DSM 20469 putative L-ascorbate 6-phosphate lactonase YP_003179351.1 377127 D 521095 CDS YP_003179352.1 257784135 8413178 378258..378959 1 NC_013203.1 catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate in the L-arabinose and L-ascorbate degradation pathways; L-ribulose-5-phosphate 4-epimerase 378959 araD 8413178 araD Atopobium parvulum DSM 20469 L-ribulose-5-phosphate 4-epimerase YP_003179352.1 378258 D 521095 CDS YP_003179353.1 257784136 8413179 379035..379883 1 NC_013203.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase 379883 8413179 Apar_0331 Atopobium parvulum DSM 20469 putative L-xylulose 5-phosphate 3-epimerase YP_003179353.1 379035 D 521095 CDS YP_003179354.1 257784137 8413180 380016..380696 1 NC_013203.1 KEGG: acp:A2cp1_4211 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 380696 8413180 Apar_0332 Atopobium parvulum DSM 20469 transaldolase YP_003179354.1 380016 D 521095 CDS YP_003179355.1 257784138 8413181 380810..381739 1 NC_013203.1 PFAM: Transketolase domain protein; KEGG: gme:Gmet_0551 transketolase subunit A; transketolase 381739 8413181 Apar_0333 Atopobium parvulum DSM 20469 transketolase YP_003179355.1 380810 D 521095 CDS YP_003179356.1 257784139 8413182 381732..382658 1 NC_013203.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: gbm:Gbem_0280 transketolase central region; transketolase 382658 8413182 Apar_0334 Atopobium parvulum DSM 20469 transketolase YP_003179356.1 381732 D 521095 CDS YP_003179357.1 257784140 8413183 382706..383611 1 NC_013203.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcb:BCB4264_A1013 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 383611 8413183 Apar_0335 Atopobium parvulum DSM 20469 helix-turn-helix domain-containing protein YP_003179357.1 382706 D 521095 CDS YP_003179358.1 257784141 8413184 383842..385467 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bcz:BCZK1718 multidrug ABC transporter, ATP- binding protein; ABC transporter-like protein 385467 8413184 Apar_0336 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179358.1 383842 D 521095 CDS YP_003179359.1 257784142 8413185 complement(385625..387028) 1 NC_013203.1 TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dol:Dole_0317 glutamate synthase (NADPH), homotetrameric; glutamate synthase (NADPH), homotetrameric 387028 8413185 Apar_0337 Atopobium parvulum DSM 20469 glutamate synthase (NADPH), homotetrameric YP_003179359.1 385625 R 521095 CDS YP_003179360.1 257784143 8413186 complement(387010..387852) 1 NC_013203.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sat:SYN_00607 ferredoxin--NADP(+) reductase subunit alpha; oxidoreductase FAD/NAD(P)-binding domain-containing protein 387852 8413186 Apar_0338 Atopobium parvulum DSM 20469 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_003179360.1 387010 R 521095 CDS YP_003179361.1 257784144 8413187 complement(388101..388640) 1 NC_013203.1 KEGG: rbe:RBE_0861 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 388640 8413187 Apar_0339 Atopobium parvulum DSM 20469 peptidyl-tRNA hydrolase YP_003179361.1 388101 R 521095 CDS YP_003179362.1 257784145 8413188 388892..389542 1 NC_013203.1 KEGG: spe:Spro_1260 pyrrolidone-carboxylate peptidase; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I; pyrrolidone-carboxylate peptidase 389542 8413188 Apar_0340 Atopobium parvulum DSM 20469 pyrrolidone-carboxylate peptidase YP_003179362.1 388892 D 521095 CDS YP_003179363.1 257784146 8413189 389645..390748 1 NC_013203.1 hypothetical protein 390748 8413189 Apar_0341 Atopobium parvulum DSM 20469 hypothetical protein YP_003179363.1 389645 D 521095 CDS YP_003179364.1 257784147 8413190 complement(390961..391956) 1 NC_013203.1 KEGG: bsu:BSU00510 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 391956 8413190 Apar_0342 Atopobium parvulum DSM 20469 ribose-phosphate pyrophosphokinase YP_003179364.1 390961 R 521095 CDS YP_003179365.1 257784148 8413191 complement(391957..393345) 1 NC_013203.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; 4-diphosphocytidyl- 2C-methyl-D-erythritol synthase; KEGG: bha:BH0065 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase 393345 8413191 Apar_0343 Atopobium parvulum DSM 20469 UDP-N-acetylglucosamine pyrophosphorylase YP_003179365.1 391957 R 521095 CDS YP_003179366.1 257784149 8413193 complement(393534..394463) 1 NC_013203.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase; peptidoglycan-binding domain 1 protein 394463 8413193 Apar_0344 Atopobium parvulum DSM 20469 peptidoglycan-binding domain 1 protein YP_003179366.1 393534 R 521095 CDS YP_003179367.1 257784150 8413194 complement(394466..395509) 1 NC_013203.1 PFAM: Polyprenyl synthetase; KEGG: son:SO_3653 octaprenyl-diphosphate synthase; polyprenyl synthetase 395509 8413194 Apar_0345 Atopobium parvulum DSM 20469 polyprenyl synthetase YP_003179367.1 394466 R 521095 CDS YP_003179368.1 257784151 8413195 complement(395517..396572) 1 NC_013203.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: bce:BC5448 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 396572 8413195 Apar_0346 Atopobium parvulum DSM 20469 UDP-glucose 4-epimerase YP_003179368.1 395517 R 521095 CDS YP_003179369.1 257784152 8413196 397494..397805 1 NC_013203.1 hypothetical protein 397805 8413196 Apar_0347 Atopobium parvulum DSM 20469 hypothetical protein YP_003179369.1 397494 D 521095 CDS YP_003179370.1 257784153 8413197 397826..398521 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_2210 ABC transporter related protein; ABC transporter-like protein 398521 8413197 Apar_0348 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179370.1 397826 D 521095 CDS YP_003179371.1 257784154 8413198 398534..399736 1 NC_013203.1 PFAM: protein of unknown function DUF214; KEGG: lpf:lpl2849 hypothetical protein; hypothetical protein 399736 8413198 Apar_0349 Atopobium parvulum DSM 20469 hypothetical protein YP_003179371.1 398534 D 521095 CDS YP_003179372.1 257784155 8413199 399746..399940 1 NC_013203.1 hypothetical protein 399940 8413199 Apar_0350 Atopobium parvulum DSM 20469 hypothetical protein YP_003179372.1 399746 D 521095 CDS YP_003179373.1 257784156 8413200 complement(400106..403861) 1 NC_013203.1 KEGG: dno:DNO_1110 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; phosphoribosylformylglycinamidine synthase 403861 8413200 Apar_0351 Atopobium parvulum DSM 20469 phosphoribosylformylglycinamidine synthase YP_003179373.1 400106 R 521095 CDS YP_003179374.1 257784157 8413201 complement(404047..404841) 1 NC_013203.1 PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein; cobalt transport protein 404841 8413201 Apar_0352 Atopobium parvulum DSM 20469 cobalt transport protein YP_003179374.1 404047 R 521095 CDS YP_003179375.1 257784158 8413202 complement(404831..406717) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfm:VFMJ11_1661 ABC-type cobalt transport system, ATP-binding protein; ABC transporter-like protein 406717 8413202 Apar_0353 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179375.1 404831 R 521095 CDS YP_003179376.1 257784159 8413203 complement(406710..407297) 1 NC_013203.1 KEGG: bca:BCE_1606 hypothetical protein; hypothetical protein 407297 8413203 Apar_0354 Atopobium parvulum DSM 20469 hypothetical protein YP_003179376.1 406710 R 521095 CDS YP_003179377.1 257784160 8413204 407711..408637 1 NC_013203.1 KEGG: bcb:BCB4264_A5216 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 408637 8413204 Apar_0355 Atopobium parvulum DSM 20469 UDP-N-acetylenolpyruvoylglucosamine reductase YP_003179377.1 407711 D 521095 CDS YP_003179378.1 257784161 8413205 complement(408660..410042) 1 NC_013203.1 PFAM: phosphofructokinase; KEGG: sml:Smlt3887 putative phosphofructokinase; phosphofructokinase 410042 8413205 Apar_0356 Atopobium parvulum DSM 20469 phosphofructokinase YP_003179378.1 408660 R 521095 CDS YP_003179379.1 257784162 8413206 complement(410361..411704) 1 NC_013203.1 PFAM: phosphofructokinase; KEGG: dar:Daro_3204 6-phosphofructokinase; phosphofructokinase 411704 8413206 Apar_0357 Atopobium parvulum DSM 20469 phosphofructokinase YP_003179379.1 410361 R 521095 CDS YP_003179380.1 257784163 8413207 complement(412330..413619) 1 NC_013203.1 KEGG: bcy:Bcer98_3678 phosphopyruvate hydratase; TIGRFAM: enolase; PFAM: enolase; enolase 413619 8413207 Apar_0358 Atopobium parvulum DSM 20469 enolase YP_003179380.1 412330 R 521095 CDS YP_003179381.1 257784164 8413208 complement(413811..414167) 1 NC_013203.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dds:Ddes_1828 cupin 2 conserved barrel domain protein; cupin 414167 8413208 Apar_0359 Atopobium parvulum DSM 20469 cupin YP_003179381.1 413811 R 521095 CDS YP_003179382.1 257784165 8413209 complement(414270..416480) 1 NC_013203.1 KEGG: bca:BCE_3516 hypothetical protein; superfamily I DNA and RNA helicase-like protein 416480 8413209 Apar_0360 Atopobium parvulum DSM 20469 superfamily I DNA and RNA helicase-like protein YP_003179382.1 414270 R 521095 CDS YP_003179383.1 257784166 8413210 complement(416488..417072) 1 NC_013203.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: bsu:BSU28190 GTPase EngB; small GTP-binding protein 417072 8413210 Apar_0361 Atopobium parvulum DSM 20469 small GTP-binding protein YP_003179383.1 416488 R 521095 CDS YP_003179384.1 257784167 8413211 complement(417194..417820) 1 NC_013203.1 hypothetical protein 417820 8413211 Apar_0362 Atopobium parvulum DSM 20469 hypothetical protein YP_003179384.1 417194 R 521095 CDS YP_003179385.1 257784168 8413212 complement(417817..418476) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU40620 hypothetical protein; ABC transporter-like protein 418476 8413212 Apar_0363 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179385.1 417817 R 521095 CDS YP_003179386.1 257784169 8413213 complement(418479..419342) 1 NC_013203.1 hypothetical protein 419342 8413213 Apar_0364 Atopobium parvulum DSM 20469 hypothetical protein YP_003179386.1 418479 R 521095 CDS YP_003179387.1 257784170 8413214 complement(419329..420147) 1 NC_013203.1 hypothetical protein 420147 8413214 Apar_0365 Atopobium parvulum DSM 20469 hypothetical protein YP_003179387.1 419329 R 521095 CDS YP_003179388.1 257784171 8413215 complement(420144..421031) 1 NC_013203.1 KEGG: bcy:Bcer98_0830 hypothetical protein; hypothetical protein 421031 8413215 Apar_0366 Atopobium parvulum DSM 20469 hypothetical protein YP_003179388.1 420144 R 521095 CDS YP_003179389.1 257784172 8413216 complement(421041..421784) 1 NC_013203.1 hypothetical protein 421784 8413216 Apar_0367 Atopobium parvulum DSM 20469 hypothetical protein YP_003179389.1 421041 R 521095 CDS YP_003179390.1 257784173 8413217 complement(422106..423020) 1 NC_013203.1 PFAM: regulatory protein LysR; KEGG: bba:Bd2619 LysR family transcriptional regulator; LysR family transcriptional regulator 423020 8413217 Apar_0368 Atopobium parvulum DSM 20469 LysR family transcriptional regulator YP_003179390.1 422106 R 521095 CDS YP_003179391.1 257784174 8413218 complement(423054..423734) 1 NC_013203.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 423734 pyrE 8413218 pyrE Atopobium parvulum DSM 20469 orotate phosphoribosyltransferase YP_003179391.1 423054 R 521095 CDS YP_003179392.1 257784175 8413219 423977..425380 1 NC_013203.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 425380 asnC 8413219 asnC Atopobium parvulum DSM 20469 asparaginyl-tRNA synthetase YP_003179392.1 423977 D 521095 CDS YP_003179393.1 257784176 8413220 425653..426993 1 NC_013203.1 PFAM: Phosphoglycerate mutase; KEGG: afr:AFE_2314 phosphohistidine phosphatase SixA; putative phosphohistidine phosphatase, SixA 426993 8413220 Apar_0371 Atopobium parvulum DSM 20469 putative phosphohistidine phosphatase, SixA YP_003179393.1 425653 D 521095 CDS YP_003179394.1 257784177 8413221 427063..428343 1 NC_013203.1 KEGG: dds:Ddes_1040 O-acetylhomoserine/O- acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 428343 8413221 Apar_0372 Atopobium parvulum DSM 20469 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_003179394.1 427063 D 521095 CDS YP_003179395.1 257784178 8413222 complement(428482..429954) 1 NC_013203.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: MATE efflux family protein; MATE efflux family protein 429954 8413222 Apar_0373 Atopobium parvulum DSM 20469 MATE efflux family protein YP_003179395.1 428482 R 521095 CDS YP_003179396.1 257784179 8413223 430154..431311 1 NC_013203.1 hypothetical protein 431311 8413223 Apar_0374 Atopobium parvulum DSM 20469 hypothetical protein YP_003179396.1 430154 D 521095 CDS YP_003179397.1 257784180 8413224 complement(431402..432847) 1 NC_013203.1 KEGG: bcr:BCAH187_A4839 Xaa-His dipeptidase; TIGRFAM: dipeptidase; PFAM: peptidase M20; dipeptidase 432847 8413224 Apar_0375 Atopobium parvulum DSM 20469 dipeptidase YP_003179397.1 431402 R 521095 CDS YP_003179398.1 257784181 8413225 432991..433512 1 NC_013203.1 hypothetical protein 433512 8413225 Apar_0376 Atopobium parvulum DSM 20469 hypothetical protein YP_003179398.1 432991 D 521095 CDS YP_003179399.1 257784182 8413226 433560..436952 1 NC_013203.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: pfo:Pfl01_2215 hypothetical protein; ABC transporter-like protein 436952 8413226 Apar_0377 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179399.1 433560 D 521095 CDS YP_003179400.1 257784183 8413227 complement(437076..440108) 1 NC_013203.1 PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: predicted protein; K06972; peptidase M16C associated domain-containing protein 440108 8413227 Apar_0378 Atopobium parvulum DSM 20469 peptidase M16C associated domain-containing protein YP_003179400.1 437076 R 521095 CDS YP_003179401.1 257784184 8413228 440259..441224 1 NC_013203.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ent:Ent638_0033 carboxylate/amino acid/amine transporter; hypothetical protein 441224 8413228 Apar_0379 Atopobium parvulum DSM 20469 hypothetical protein YP_003179401.1 440259 D 521095 CDS YP_003179402.1 257784185 8413229 complement(441371..442483) 1 NC_013203.1 KEGG: bsu:BSU34800 hypothetical protein; hypothetical protein 442483 8413229 Apar_0380 Atopobium parvulum DSM 20469 hypothetical protein YP_003179402.1 441371 R 521095 CDS YP_003179403.1 257784186 8413230 442739..443671 1 NC_013203.1 PFAM: Bacitracin resistance protein BacA; KEGG: rme:Rmet_2705 undecaprenyl pyrophosphate phosphatase; undecaprenyl-diphosphatase 443671 8413230 Apar_0381 Atopobium parvulum DSM 20469 undecaprenyl-diphosphatase YP_003179403.1 442739 D 521095 CDS YP_003179404.1 257784187 8413231 443825..446263 1 NC_013203.1 PFAM: UvrD/REP helicase; KEGG: bcr:BCAH187_A0377 ATP-dependent DNA helicase PcrA; UvrD/REP helicase 446263 8413231 Apar_0382 Atopobium parvulum DSM 20469 UvrD/REP helicase YP_003179404.1 443825 D 521095 CDS YP_003179405.1 257784188 8413232 446266..447048 1 NC_013203.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa0396 mechanosensitive channel protein; mechanosensitive ion channel MscS 447048 8413232 Apar_0383 Atopobium parvulum DSM 20469 mechanosensitive ion channel MscS YP_003179405.1 446266 D 521095 CDS YP_003179406.1 257784189 8413233 447050..447748 1 NC_013203.1 PFAM: purine or other phosphorylase family 1; KEGG: bha:BH3238 5'-methylthioadenosine/S- adenosylhomocysteine nuclosidase; Adenosylhomocysteine nucleosidase 447748 8413233 Apar_0384 Atopobium parvulum DSM 20469 Adenosylhomocysteine nucleosidase YP_003179406.1 447050 D 521095 CDS YP_003179407.1 257784190 8413234 447899..448948 1 NC_013203.1 PFAM: phosphate transporter; KEGG: sfu:Sfum_2275 phosphate transporter; phosphate transporter 448948 8413234 Apar_0385 Atopobium parvulum DSM 20469 phosphate transporter YP_003179407.1 447899 D 521095 CDS YP_003179408.1 257784191 8413235 449008..449628 1 NC_013203.1 PFAM: protein of unknown function DUF47; KEGG: glo:Glov_0586 protein of unknown function DUF47; hypothetical protein 449628 8413235 Apar_0386 Atopobium parvulum DSM 20469 hypothetical protein YP_003179408.1 449008 D 521095 CDS YP_003179409.1 257784192 8413236 449752..450447 1 NC_013203.1 hypothetical protein 450447 8413236 Apar_0387 Atopobium parvulum DSM 20469 hypothetical protein YP_003179409.1 449752 D 521095 CDS YP_003179410.1 257784193 8413237 450440..450682 1 NC_013203.1 hypothetical protein 450682 8413237 Apar_0388 Atopobium parvulum DSM 20469 hypothetical protein YP_003179410.1 450440 D 521095 CDS YP_003179411.1 257784194 8413238 450696..451184 1 NC_013203.1 PFAM: protein of unknown function DUF322; KEGG: bha:BH2786 hypothetical protein; hypothetical protein 451184 8413238 Apar_0389 Atopobium parvulum DSM 20469 hypothetical protein YP_003179411.1 450696 D 521095 CDS YP_003179412.1 257784195 8413239 451397..452161 1 NC_013203.1 PFAM: aminoglycoside phosphotransferase; KEGG: bce:BC2521 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 452161 8413239 Apar_0390 Atopobium parvulum DSM 20469 aminoglycoside phosphotransferase YP_003179412.1 451397 D 521095 CDS YP_003179413.1 257784196 8413240 452514..453287 1 NC_013203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: prw:PsycPRwf_1445 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 453287 8413240 Apar_0391 Atopobium parvulum DSM 20469 binding-protein-dependent transport system inner membrane protein YP_003179413.1 452514 D 521095 CDS YP_003179414.1 257784197 8413241 453323..454378 1 NC_013203.1 PFAM: NMT1/THI5 like domain protein; KEGG: prw:PsycPRwf_1444 NMT1/THI5-like protein; NMT1/THI5 like domain-containing protein 454378 8413241 Apar_0392 Atopobium parvulum DSM 20469 NMT1/THI5 like domain-containing protein YP_003179414.1 453323 D 521095 CDS YP_003179415.1 257784198 8413242 454410..455255 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: prw:PsycPRwf_1443 ABC transporter related; ABC transporter-like protein 455255 8413242 Apar_0393 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179415.1 454410 D 521095 CDS YP_003179416.1 257784199 8413243 complement(455391..456812) 1 NC_013203.1 PFAM: peptidase M18 aminopeptidase I; KEGG: ppr:PBPRB1552 putative aminopeptidase 1; peptidase M18 aminopeptidase I 456812 8413243 Apar_0394 Atopobium parvulum DSM 20469 peptidase M18 aminopeptidase I YP_003179416.1 455391 R 521095 CDS YP_003179417.1 257784200 8413244 complement(456914..457858) 1 NC_013203.1 KEGG: hypothetical protein LOC100021983; hypothetical protein 457858 8413244 Apar_0395 Atopobium parvulum DSM 20469 hypothetical protein YP_003179417.1 456914 R 521095 CDS YP_003179418.1 257784201 8413245 458165..459037 1 NC_013203.1 KEGG: bcy:Bcer98_3856 fructose-bisphosphate aldolase; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase 459037 8413245 Apar_0396 Atopobium parvulum DSM 20469 fructose-1,6-bisphosphate aldolase YP_003179418.1 458165 D 521095 CDS YP_003179419.1 257784202 8413246 complement(459292..459744) 1 NC_013203.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pat:Patl_1237 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 459744 8413246 Apar_0397 Atopobium parvulum DSM 20469 BadM/Rrf2 family transcriptional regulator YP_003179419.1 459292 R 521095 CDS YP_003179420.1 257784203 8413247 complement(459746..460273) 1 NC_013203.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: lpc:LPC_2694 nitrogen fixation protein (Fe-S cluster formation) NifU; NifU family SUF system FeS assembly protein 460273 8413247 Apar_0398 Atopobium parvulum DSM 20469 NifU family SUF system FeS assembly protein YP_003179420.1 459746 R 521095 CDS YP_003179421.1 257784204 8413248 complement(460274..461563) 1 NC_013203.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: bcy:Bcer98_3577 SufS subfamily cysteine desulfurase; SufS subfamily cysteine desulfurase 461563 8413248 Apar_0399 Atopobium parvulum DSM 20469 SufS subfamily cysteine desulfurase YP_003179421.1 460274 R 521095 CDS YP_003179422.1 257784205 8413249 complement(461563..462702) 1 NC_013203.1 PFAM: SufBD protein; KEGG: bha:BH3470 hypothetical protein; SufBD protein 462702 8413249 Apar_0400 Atopobium parvulum DSM 20469 SufBD protein YP_003179422.1 461563 R 521095 CDS YP_003179423.1 257784206 8413250 complement(462702..464120) 1 NC_013203.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcy:Bcer98_3575 FeS assembly protein SufB; FeS assembly protein SufB 464120 8413250 Apar_0401 Atopobium parvulum DSM 20469 FeS assembly protein SufB YP_003179423.1 462702 R 521095 CDS YP_003179424.1 257784207 8413251 complement(464120..464887) 1 NC_013203.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: oca:OCAR_6000 FeS assembly ATPase SufC; FeS assembly ATPase SufC 464887 8413251 Apar_0402 Atopobium parvulum DSM 20469 FeS assembly ATPase SufC YP_003179424.1 464120 R 521095 CDS YP_003179425.1 257784208 8413252 465219..466529 1 NC_013203.1 KEGG: ade:Adeh_1510 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 466529 8413252 Apar_0403 Atopobium parvulum DSM 20469 histidyl-tRNA synthetase YP_003179425.1 465219 D 521095 CDS YP_003179426.1 257784209 8413253 466619..467116 1 NC_013203.1 KEGG: apa:APP7_1560 hypothetical protein; hypothetical protein 467116 8413253 Apar_0404 Atopobium parvulum DSM 20469 hypothetical protein YP_003179426.1 466619 D 521095 CDS YP_003179427.1 257784210 8413254 467169..467987 1 NC_013203.1 PFAM: Integrase catalytic region; KEGG: apj:APJL_1896 transposase; integrase catalytic subunit 467987 8413254 Apar_0405 Atopobium parvulum DSM 20469 integrase catalytic subunit YP_003179427.1 467169 D 521095 CDS YP_003179428.1 257784211 8413255 468232..470397 1 NC_013203.1 KEGG: bcy:Bcer98_1389 bacteriocin-associated integral membrane protein; hypothetical protein 470397 8413255 Apar_0406 Atopobium parvulum DSM 20469 hypothetical protein YP_003179428.1 468232 D 521095 CDS YP_003179429.1 257784212 8413256 470400..471053 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0281 ABC transporter ATP-binding protein; ABC transporter-like protein 471053 8413256 Apar_0407 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179429.1 470400 D 521095 CDS YP_003179430.1 257784213 8413257 complement(471129..472562) 1 NC_013203.1 PFAM: Na+/H+ antiporter NhaC; KEGG: sit:TM1040_2159 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 472562 8413257 Apar_0408 Atopobium parvulum DSM 20469 Na+/H+ antiporter NhaC YP_003179430.1 471129 R 521095 CDS YP_003179431.1 257784214 8413258 472679..473620 1 NC_013203.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: plu:plu0110 DNA-binding transcriptional regulator CynR; LysR family transcriptional regulator 473620 8413258 Apar_0409 Atopobium parvulum DSM 20469 LysR family transcriptional regulator YP_003179431.1 472679 D 521095 CDS YP_003179432.1 257784215 8413259 473622..474362 1 NC_013203.1 PFAM: pseudouridine synthase; KEGG: bcy:Bcer98_1014 RluA family pseudouridine synthase; pseudouridine synthase 474362 8413259 Apar_0410 Atopobium parvulum DSM 20469 pseudouridine synthase YP_003179432.1 473622 D 521095 CDS YP_003179433.1 257784216 8413260 474447..476042 1 NC_013203.1 PFAM: hydrogenase large subunit domain protein; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP2379 hydrogenase; ferredoxin hydrogenase 476042 8413260 Apar_0411 Atopobium parvulum DSM 20469 ferredoxin hydrogenase YP_003179433.1 474447 D 521095 CDS YP_003179434.1 257784217 8413261 complement(476189..476497) 1 NC_013203.1 hypothetical protein 476497 8413261 Apar_0412 Atopobium parvulum DSM 20469 hypothetical protein YP_003179434.1 476189 R 521095 CDS YP_003179435.1 257784218 8413262 476774..478741 1 NC_013203.1 PFAM: Glucan-binding protein C; KEGG: similar to GTPase, IMAP family member 4; Glucan-binding protein C 478741 8413262 Apar_0413 Atopobium parvulum DSM 20469 Glucan-binding protein C YP_003179435.1 476774 D 521095 CDS YP_003179436.1 257784219 8413263 complement(478840..479493) 1 NC_013203.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dal:Dalk_1233 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase 479493 8413263 Apar_0414 Atopobium parvulum DSM 20469 HAD-superfamily hydrolase YP_003179436.1 478840 R 521095 CDS YP_003179437.1 257784220 8413264 479696..479941 1 NC_013203.1 hypothetical protein 479941 8413264 Apar_0415 Atopobium parvulum DSM 20469 hypothetical protein YP_003179437.1 479696 D 521095 CDS YP_003179438.1 257784221 8413265 479938..481440 1 NC_013203.1 KEGG: hypothetical protein; Dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein 481440 8413265 Apar_0416 Atopobium parvulum DSM 20469 Dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein YP_003179438.1 479938 D 521095 CDS YP_003179439.1 257784222 8413266 481701..482939 1 NC_013203.1 SMART: serine/threonine protein kinase; KEGG: bcr:BCAH187_A4758 serine/threonine protein kinase, putative; serine/threonine protein kinase 482939 8413266 Apar_0417 Atopobium parvulum DSM 20469 serine/threonine protein kinase YP_003179439.1 481701 D 521095 CDS YP_003179440.1 257784223 8413267 482941..483843 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: prw:PsycPRwf_0606 ABC transporter related; ABC transporter-like protein 483843 8413267 Apar_0418 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179440.1 482941 D 521095 CDS YP_003179441.1 257784224 8413268 483833..484621 1 NC_013203.1 PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0632 ABC-2 type transporter, NodJ family; ABC-2 type transporter 484621 8413268 Apar_0419 Atopobium parvulum DSM 20469 ABC-2 type transporter YP_003179441.1 483833 D 521095 CDS YP_003179442.1 257784225 8413269 484803..486629 1 NC_013203.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dal:Dalk_2756 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 486629 8413269 Apar_0420 Atopobium parvulum DSM 20469 aspartyl-tRNA synthetase YP_003179442.1 484803 D 521095 CDS YP_003179443.1 257784226 8413270 486675..488477 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bcb:BCB4264_A2400 ABC transporter, permease/ATP-binding protein; ABC transporter-like protein 488477 8413270 Apar_0421 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179443.1 486675 D 521095 CDS YP_003179444.1 257784227 8413271 488470..490290 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bcy:Bcer98_1782 ABC transporter-related protein; ABC transporter-like protein 490290 8413271 Apar_0422 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179444.1 488470 D 521095 CDS YP_003179445.1 257784228 8413272 490302..490673 1 NC_013203.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: bph:Bphy_1762 CrcB protein; CrcB protein 490673 8413272 Apar_0423 Atopobium parvulum DSM 20469 CrcB protein YP_003179445.1 490302 D 521095 CDS YP_003179446.1 257784229 8413273 490778..491623 1 NC_013203.1 PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bce:BC4832 AraC family transcriptional regulator; AraC family transcriptional regulator 491623 8413273 Apar_0424 Atopobium parvulum DSM 20469 AraC family transcriptional regulator YP_003179446.1 490778 D 521095 CDS YP_003179447.1 257784230 8413274 complement(491653..493110) 1 NC_013203.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BSU02670 drug-export protein; EmrB/QacA subfamily drug resistance transporter 493110 8413274 Apar_0425 Atopobium parvulum DSM 20469 EmrB/QacA subfamily drug resistance transporter YP_003179447.1 491653 R 521095 CDS YP_003179448.1 257784231 8413275 complement(493285..494046) 1 NC_013203.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 494046 gpmA 8413275 gpmA Atopobium parvulum DSM 20469 phosphoglyceromutase YP_003179448.1 493285 R 521095 CDS YP_003179449.1 257784232 8413276 494347..494550 1 NC_013203.1 hypothetical protein 494550 8413276 Apar_0427 Atopobium parvulum DSM 20469 hypothetical protein YP_003179449.1 494347 D 521095 CDS YP_003179450.1 257784233 8413277 494679..495992 1 NC_013203.1 PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sat:SYN_01628 glutamine synthetase; glutamine synthetase 495992 8413277 Apar_0428 Atopobium parvulum DSM 20469 glutamine synthetase YP_003179450.1 494679 D 521095 CDS YP_003179451.1 257784234 8413278 496355..497206 1 NC_013203.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: efe:EFER_1174 cystine transporter subunit ; periplasmic-binding component of ABC superfamily; family 3 extracellular solute-binding protein 497206 8413278 Apar_0429 Atopobium parvulum DSM 20469 family 3 extracellular solute-binding protein YP_003179451.1 496355 D 521095 CDS YP_003179452.1 257784235 8413279 497392..498741 1 NC_013203.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP1983 glutamine ABC-transporter, permease protein (GlnP); polar amino acid ABC transporter inner membrane subunit 498741 8413279 Apar_0430 Atopobium parvulum DSM 20469 polar amino acid ABC transporter inner membrane subunit YP_003179452.1 497392 D 521095 CDS YP_003179453.1 257784236 8413280 498741..499601 1 NC_013203.1 PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: rsh:Rsph17029_3103 ABC transporter related; ABC transporter-like protein 499601 8413280 Apar_0431 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179453.1 498741 D 521095 CDS YP_003179454.1 257784237 8413281 499757..500431 1 NC_013203.1 PFAM: transcriptional regulator domain protein; KEGG: glo:Glov_0588 two component transcriptional regulator, winged helix family; putative winged helix family two component transcriptional regulator 500431 8413281 Apar_0432 Atopobium parvulum DSM 20469 putative winged helix family two component transcriptional regulator YP_003179454.1 499757 D 521095 CDS YP_003179455.1 257784238 8413282 500625..502040 1 NC_013203.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: dar:Daro_3371 peptidase S1 and S6, chymotrypsin/Hap:PDZ/DHR/GLGF; peptidase S1 and S6 chymotrypsin/Hap 502040 8413282 Apar_0433 Atopobium parvulum DSM 20469 peptidase S1 and S6 chymotrypsin/Hap YP_003179455.1 500625 D 521095 CDS YP_003179456.1 257784239 8413283 502117..503466 1 NC_013203.1 PFAM: protein of unknown function DUF195; KEGG: bte:BTH_I1701 RmuC domain-containing protein; hypothetical protein 503466 8413283 Apar_0434 Atopobium parvulum DSM 20469 hypothetical protein YP_003179456.1 502117 D 521095 CDS YP_003179457.1 257784240 8413284 503556..504542 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU02750 Na+ ABC transporter ATP-binding protein; ABC transporter-like protein 504542 8413284 Apar_0435 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179457.1 503556 D 521095 CDS YP_003179458.1 257784241 8413285 504526..505290 1 NC_013203.1 PFAM: ABC-2 type transporter; KEGG: abc:ACICU_01702 ABC-type multidrug transport system, permease component; ABC-2 type transporter 505290 8413285 Apar_0436 Atopobium parvulum DSM 20469 ABC-2 type transporter YP_003179458.1 504526 D 521095 CDS YP_003179459.1 257784242 8413286 505293..506078 1 NC_013203.1 KEGG: sus:Acid_0603 ABC-2 type transporter; hypothetical protein 506078 8413286 Apar_0437 Atopobium parvulum DSM 20469 hypothetical protein YP_003179459.1 505293 D 521095 CDS YP_003179460.1 257784243 8413287 506157..506480 1 NC_013203.1 PFAM: protein of unknown function DUF156; KEGG: bsu:BSU33520 hypothetical protein; hypothetical protein 506480 8413287 Apar_0438 Atopobium parvulum DSM 20469 hypothetical protein YP_003179460.1 506157 D 521095 CDS YP_003179461.1 257784244 8413288 506490..509093 1 NC_013203.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: abu:Abu_0480 heavy-metal transporting P-type ATPase; heavy metal translocating P-type ATPase 509093 8413288 Apar_0439 Atopobium parvulum DSM 20469 heavy metal translocating P-type ATPase YP_003179461.1 506490 D 521095 CDS YP_003179462.1 257784245 8413289 complement(509083..510081) 1 NC_013203.1 KEGG: hdu:HD0377 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 510081 8413289 Apar_0440 Atopobium parvulum DSM 20469 adenosine deaminase YP_003179462.1 509083 R 521095 CDS YP_003179463.1 257784246 8413290 complement(510127..511161) 1 NC_013203.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: eum:ECUMN_2431 putative (phospho)hydrolase; ADP-ribosylation/Crystallin J1 511161 8413290 Apar_0441 Atopobium parvulum DSM 20469 ADP-ribosylation/Crystallin J1 YP_003179463.1 510127 R 521095 CDS YP_003179464.1 257784247 8413291 511593..512555 1 NC_013203.1 hypothetical protein 512555 8413291 Apar_0442 Atopobium parvulum DSM 20469 hypothetical protein YP_003179464.1 511593 D 521095 CDS YP_003179465.1 257784248 8413292 512562..513341 1 NC_013203.1 PFAM: metallophosphoesterase; KEGG: bbt:BBta_1036 putative serine/threonine protein phosphatase; metallophosphoesterase 513341 8413292 Apar_0443 Atopobium parvulum DSM 20469 metallophosphoesterase YP_003179465.1 512562 D 521095 CDS YP_003179466.1 257784249 8413293 513344..513901 1 NC_013203.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: cff:CFF8240_1263 Mug G:T/U mismatch-specific DNA glycosylase; uracil-DNA glycosylase 513901 8413293 Apar_0444 Atopobium parvulum DSM 20469 uracil-DNA glycosylase YP_003179466.1 513344 D 521095 CDS YP_003179467.1 257784250 8413294 514106..514759 1 NC_013203.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccv:CCV52592_0287 ABC transporter membrane- spanning permease - glutamine transport; polar amino acid ABC transporter inner membrane subunit 514759 8413294 Apar_0445 Atopobium parvulum DSM 20469 polar amino acid ABC transporter inner membrane subunit YP_003179467.1 514106 D 521095 CDS YP_003179468.1 257784251 8413295 514746..515423 1 NC_013203.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: asu:Asuc_1950 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 515423 8413295 Apar_0446 Atopobium parvulum DSM 20469 polar amino acid ABC transporter inner membrane subunit YP_003179468.1 514746 D 521095 CDS YP_003179469.1 257784252 8413296 515416..516171 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hhe:HH0347 hypothetical protein; ABC transporter-like protein 516171 8413296 Apar_0447 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179469.1 515416 D 521095 CDS YP_003179470.1 257784253 8413297 516230..517126 1 NC_013203.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ccv:CCV52592_0290 acriflavine resistance protein; family 3 extracellular solute-binding protein 517126 8413297 Apar_0448 Atopobium parvulum DSM 20469 family 3 extracellular solute-binding protein YP_003179470.1 516230 D 521095 CDS YP_003179471.1 257784254 8413298 517328..518323 1 NC_013203.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 518323 8413298 Apar_0449 Atopobium parvulum DSM 20469 2-keto-3-deoxygluconate permease YP_003179471.1 517328 D 521095 CDS YP_003179472.1 257784255 8413299 518470..519558 1 NC_013203.1 PFAM: lipolytic protein G-D-S-L family; KEGG: ftn:FTN_0894 GDSL-like lipolytic enzyme; G-D-S-L family lipolytic protein 519558 8413299 Apar_0450 Atopobium parvulum DSM 20469 G-D-S-L family lipolytic protein YP_003179472.1 518470 D 521095 CDS YP_003179473.1 257784256 8413300 519657..520898 1 NC_013203.1 KEGG: dol:Dole_1124 metal-dependent phosphohydrolase; metal-dependent phosphohydrolase 520898 8413300 Apar_0451 Atopobium parvulum DSM 20469 metal-dependent phosphohydrolase YP_003179473.1 519657 D 521095 CDS YP_003179474.1 257784257 8413301 521005..522336 1 NC_013203.1 PFAM: AAA ATPase central domain protein; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gsu:GSU2067 recombination factor protein RarA; ATPase AAA 522336 8413301 Apar_0452 Atopobium parvulum DSM 20469 ATPase AAA YP_003179474.1 521005 D 521095 CDS YP_003179475.1 257784258 8413302 522428..523039 1 NC_013203.1 KEGG: similar to Adipophilin (Adipose differentiation-related protein) (ADRP); hypothetical protein 523039 8413302 Apar_0453 Atopobium parvulum DSM 20469 hypothetical protein YP_003179475.1 522428 D 521095 CDS YP_003179476.1 257784259 8413303 523046..523429 1 NC_013203.1 hypothetical protein 523429 8413303 Apar_0454 Atopobium parvulum DSM 20469 hypothetical protein YP_003179476.1 523046 D 521095 CDS YP_003179477.1 257784260 8413304 523422..524276 1 NC_013203.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: bha:BH0529 RNA polymerase sigma factor SigB; sigma-B/F/G subfamily RNA polymerase sigma-28 factor 524276 8413304 Apar_0455 Atopobium parvulum DSM 20469 sigma-B/F/G subfamily RNA polymerase sigma-28 factor YP_003179477.1 523422 D 521095 CDS YP_003179478.1 257784261 8413305 524276..525658 1 NC_013203.1 PFAM: protein of unknown function UPF0118; KEGG: bsu:BSU27420 hypothetical protein; hypothetical protein 525658 8413305 Apar_0456 Atopobium parvulum DSM 20469 hypothetical protein YP_003179478.1 524276 D 521095 CDS YP_003179479.1 257784262 8413306 525684..528329 1 NC_013203.1 KEGG: rme:Rmet_0831 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase 528329 8413306 Apar_0457 Atopobium parvulum DSM 20469 alanyl-tRNA synthetase YP_003179479.1 525684 D 521095 CDS YP_003179480.1 257784263 8413307 528333..528755 1 NC_013203.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: afw:Anae109_2535 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF 528755 8413307 Apar_0458 Atopobium parvulum DSM 20469 Holliday junction resolvase YqgF YP_003179480.1 528333 D 521095 CDS YP_003179481.1 257784264 8413308 528756..530111 1 NC_013203.1 PFAM: aminodeoxychorismate lyase; KEGG: gme:Gmet_3021 aminodeoxychorismate lyase; aminodeoxychorismate lyase 530111 8413308 Apar_0459 Atopobium parvulum DSM 20469 aminodeoxychorismate lyase YP_003179481.1 528756 D 521095 CDS YP_003179482.1 257784265 8413309 530123..530620 1 NC_013203.1 TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: bcy:Bcer98_3062 HAD family phosphatase; HAD superfamily (subfamily IIIA) phosphatase 530620 8413309 Apar_0460 Atopobium parvulum DSM 20469 HAD superfamily (subfamily IIIA) phosphatase YP_003179482.1 530123 D 521095 CDS YP_003179483.1 257784266 8413310 530685..531233 1 NC_013203.1 PFAM: shikimate kinase; KEGG: asu:Asuc_0264 shikimate kinase; shikimate kinase 531233 8413310 Apar_0461 Atopobium parvulum DSM 20469 shikimate kinase YP_003179483.1 530685 D 521095 CDS YP_003179484.1 257784267 8413311 531230..532366 1 NC_013203.1 PFAM: 3-dehydroquinate synthase; KEGG: ccs:CCNA_03104 3-dehydroquinate synthase; 3-dehydroquinate synthase 532366 8413311 Apar_0462 Atopobium parvulum DSM 20469 3-dehydroquinate synthase YP_003179484.1 531230 D 521095 CDS YP_003179485.1 257784268 8413312 532459..533583 1 NC_013203.1 PFAM: peptidase M24; creatinase; KEGG: bcb:BCB4264_A4308 X-Pro dipeptidase; peptidase M24 533583 8413312 Apar_0463 Atopobium parvulum DSM 20469 peptidase M24 YP_003179485.1 532459 D 521095 CDS YP_003179486.1 257784269 8413313 533833..534831 1 NC_013203.1 PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component; KEGG: ypi:YpsIP31758_2368 PTS system mannose/fructose/sorbose family IIB subunit; Protein-N(pi)-phosphohistidine--sugar phosphotransferase 534831 8413313 Apar_0464 Atopobium parvulum DSM 20469 Protein-N(pi)-phosphohistidine--sugar phosphotransferase YP_003179486.1 533833 D 521095 CDS YP_003179487.1 257784270 8413314 534848..535663 1 NC_013203.1 PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: stm:STM1831 mannose-specific enzyme IIC; PTS sorbose-specific transporter subunit IIC 535663 8413314 Apar_0465 Atopobium parvulum DSM 20469 PTS sorbose-specific transporter subunit IIC YP_003179487.1 534848 D 521095 CDS YP_003179488.1 257784271 8413315 535685..536602 1 NC_013203.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: asu:Asuc_0288 PTS system mannose/fructose/sorbose family IID subunit; PTS system mannose/fructose/sorbose family transporter subunit IID 536602 8413315 Apar_0466 Atopobium parvulum DSM 20469 PTS system mannose/fructose/sorbose family transporter subunit IID YP_003179488.1 535685 D 521095 CDS YP_003179489.1 257784272 8413316 536689..537096 1 NC_013203.1 PFAM: protein of unknown function DUF956; hypothetical protein 537096 8413316 Apar_0467 Atopobium parvulum DSM 20469 hypothetical protein YP_003179489.1 536689 D 521095 CDS YP_003179490.1 257784273 8413317 537233..537796 1 NC_013203.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; KEGG: aeh:Mlg_0684 translation elongation factor P (EF-P); translation elongation factor P 537796 8413317 Apar_0468 Atopobium parvulum DSM 20469 translation elongation factor P YP_003179490.1 537233 D 521095 CDS YP_003179491.1 257784274 8413318 537878..538243 1 NC_013203.1 KEGG: bsu:BSU15830 hypothetical protein; hypothetical protein 538243 8413318 Apar_0469 Atopobium parvulum DSM 20469 hypothetical protein YP_003179491.1 537878 D 521095 CDS YP_003179492.1 257784275 8413319 538246..538749 1 NC_013203.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: mgm:Mmc1_0164 NusB antitermination factor; NusB antitermination factor 538749 8413319 Apar_0470 Atopobium parvulum DSM 20469 NusB antitermination factor YP_003179492.1 538246 D 521095 CDS YP_003179493.1 257784276 8413320 538752..539090 1 NC_013203.1 hypothetical protein 539090 8413320 Apar_0471 Atopobium parvulum DSM 20469 hypothetical protein YP_003179493.1 538752 D 521095 CDS YP_003179494.1 257784277 8413321 539090..539896 1 NC_013203.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pca:Pcar_1058 rRNA methylase; hemolysin A 539896 8413321 Apar_0472 Atopobium parvulum DSM 20469 hemolysin A YP_003179494.1 539090 D 521095 CDS YP_003179495.1 257784278 8413322 540015..540872 1 NC_013203.1 PFAM: ATP-NAD/AcoX kinase; KEGG: nmu:Nmul_A2422 NAD(+) kinase; ATP-NAD/AcoX kinase 540872 8413322 Apar_0473 Atopobium parvulum DSM 20469 ATP-NAD/AcoX kinase YP_003179495.1 540015 D 521095 CDS YP_003179496.1 257784279 8413323 540884..542515 1 NC_013203.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: dal:Dalk_3718 DNA repair protein RecN; DNA repair protein RecN 542515 8413323 Apar_0474 Atopobium parvulum DSM 20469 DNA repair protein RecN YP_003179496.1 540884 D 521095 CDS YP_003179497.1 257784280 8413324 542650..544299 1 NC_013203.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 544299 pyrG 8413324 pyrG Atopobium parvulum DSM 20469 CTP synthetase YP_003179497.1 542650 D 521095 CDS YP_003179498.1 257784281 8413325 544328..545236 1 NC_013203.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bsu:BSU23510 site-specific tyrosine recombinase XerD; tyrosine recombinase XerD 545236 8413325 Apar_0476 Atopobium parvulum DSM 20469 tyrosine recombinase XerD YP_003179498.1 544328 D 521095 CDS YP_003179499.1 257784282 8413326 545644..546078 1 NC_013203.1 PFAM: protein of unknown function UPF0040; KEGG: cvi:CV_4352 hypothetical protein; hypothetical protein 546078 8413326 Apar_0477 Atopobium parvulum DSM 20469 hypothetical protein YP_003179499.1 545644 D 521095 CDS YP_003179500.1 257784283 8413327 546094..547077 1 NC_013203.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: gsu:GSU3077 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 547077 8413327 Apar_0478 Atopobium parvulum DSM 20469 S-adenosyl-methyltransferase MraW YP_003179500.1 546094 D 521095 CDS YP_003179501.1 257784284 8413328 547136..547555 1 NC_013203.1 hypothetical protein 547555 8413328 Apar_0479 Atopobium parvulum DSM 20469 hypothetical protein YP_003179501.1 547136 D 521095 CDS YP_003179502.1 257784285 8413329 547647..549371 1 NC_013203.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: aba:Acid345_3635 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 549371 8413329 Apar_0480 Atopobium parvulum DSM 20469 peptidoglycan glycosyltransferase YP_003179502.1 547647 D 521095 CDS YP_003179503.1 257784286 8413330 549380..550816 1 NC_013203.1 TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: bsu:BSU04570 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate-D-alanyl-D -alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase 550816 8413330 Apar_0481 Atopobium parvulum DSM 20469 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase YP_003179503.1 549380 D 521095 CDS YP_003179504.1 257784287 8413331 550816..551847 1 NC_013203.1 KEGG: bcy:Bcer98_2563 phospho-N-acetylmuramoyl- pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-transf erase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase 551847 8413331 Apar_0482 Atopobium parvulum DSM 20469 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_003179504.1 550816 D 521095 CDS YP_003179505.1 257784288 8413332 551877..553280 1 NC_013203.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: aba:Acid345_3631 UDP-N-acetylmuramoylalanine-- D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 553280 8413332 Apar_0483 Atopobium parvulum DSM 20469 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_003179505.1 551877 D 521095 CDS YP_003179506.1 257784289 8413333 553280..554809 1 NC_013203.1 PFAM: cell cycle protein; KEGG: bcy:Bcer98_2561 stage V sporulation protein E; cell cycle protein 554809 8413333 Apar_0484 Atopobium parvulum DSM 20469 cell cycle protein YP_003179506.1 553280 D 521095 CDS YP_003179507.1 257784290 8413334 554833..555966 1 NC_013203.1 KEGG: bha:BH2565 N-acetylglucosaminyl transferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase 555966 8413334 Apar_0485 Atopobium parvulum DSM 20469 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase YP_003179507.1 554833 D 521095 CDS YP_003179508.1 257784291 8413335 555994..557463 1 NC_013203.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: UDP-N-acetylmuramate/alanine ligase ; K01924 UDP-N-acetylmuramate--alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 557463 8413335 Apar_0486 Atopobium parvulum DSM 20469 UDP-N-acetylmuramate--L-alanine ligase YP_003179508.1 555994 D 521095 CDS YP_003179509.1 257784292 8413336 557474..558388 1 NC_013203.1 KEGG: bha:BH2564 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 558388 8413336 Apar_0487 Atopobium parvulum DSM 20469 UDP-N-acetylenolpyruvoylglucosamine reductase YP_003179509.1 557474 D 521095 CDS YP_003179510.1 257784293 8413337 558396..559484 1 NC_013203.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: ppd:Ppro_3285 polypeptide-transport- associated domain-containing protein; Polypeptide-transport-associated domain-containing protein FtsQ-type 559484 8413337 Apar_0488 Atopobium parvulum DSM 20469 Polypeptide-transport-associated domain-containing protein FtsQ-type YP_003179510.1 558396 D 521095 CDS YP_003179511.1 257784294 8413338 559732..560868 1 NC_013203.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: bcy:Bcer98_2555 cell division protein FtsZ; cell division protein FtsZ 560868 8413338 Apar_0489 Atopobium parvulum DSM 20469 cell division protein FtsZ YP_003179511.1 559732 D 521095 CDS YP_003179512.1 257784295 8413339 560916..561680 1 NC_013203.1 PFAM: protein of unknown function DUF152; KEGG: mxa:MXAN_2999 conserved hypothetical protein TIGR00726; hypothetical protein 561680 8413339 Apar_0490 Atopobium parvulum DSM 20469 hypothetical protein YP_003179512.1 560916 D 521095 CDS YP_003179513.1 257784296 8413340 561741..562475 1 NC_013203.1 PFAM: alanine racemase domain protein; KEGG: bba:Bd0466 hypothetical protein; alanine racemase domain-containing protein 562475 8413340 Apar_0491 Atopobium parvulum DSM 20469 alanine racemase domain-containing protein YP_003179513.1 561741 D 521095 CDS YP_003179514.1 257784297 8413341 562536..563216 1 NC_013203.1 PFAM: protein of unknown function DUF552; KEGG: bha:BH2549 hypothetical protein; hypothetical protein 563216 8413341 Apar_0492 Atopobium parvulum DSM 20469 hypothetical protein YP_003179514.1 562536 D 521095 CDS YP_003179515.1 257784298 8413342 563229..563507 1 NC_013203.1 PFAM: protein of unknown function YGGT; KEGG: bcy:Bcer98_2547 protein of unknown function YGGT; hypothetical protein 563507 8413342 Apar_0493 Atopobium parvulum DSM 20469 hypothetical protein YP_003179515.1 563229 D 521095 CDS YP_003179516.1 257784299 8413343 563587..564222 1 NC_013203.1 PFAM: DivIVA family protein; KEGG: bha:BH2546 cell-division initiation protein (septum placement); DivIVA family protein 564222 8413343 Apar_0494 Atopobium parvulum DSM 20469 DivIVA family protein YP_003179516.1 563587 D 521095 CDS YP_003179517.1 257784300 8413344 complement(564299..565339) 1 NC_013203.1 KEGG: abb:ABBFA_000396 hypothetical protein; hypothetical protein 565339 8413344 Apar_0495 Atopobium parvulum DSM 20469 hypothetical protein YP_003179517.1 564299 R 521095 CDS YP_003179518.1 257784301 8413345 complement(565311..566720) 1 NC_013203.1 KEGG: gme:Gmet_0124 radical SAM family protein; radical SAM family protein 566720 8413345 Apar_0496 Atopobium parvulum DSM 20469 radical SAM family protein YP_003179518.1 565311 R 521095 CDS YP_003179519.1 257784302 8413346 566845..568323 1 NC_013203.1 KEGG: scl:sce1090 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 568323 8413346 Apar_0497 Atopobium parvulum DSM 20469 metal dependent phosphohydrolase YP_003179519.1 566845 D 521095 CDS YP_003179520.1 257784303 8413347 complement(568367..570547) 1 NC_013203.1 TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0357 ABC-2 type transporter; YhgE/Pip C-terminal domain-containing protein 570547 8413347 Apar_0498 Atopobium parvulum DSM 20469 YhgE/Pip C-terminal domain-containing protein YP_003179520.1 568367 R 521095 CDS YP_003179521.1 257784304 8413348 complement(570549..573179) 1 NC_013203.1 TIGRFAM: YhgE/Pip N-terminal domain protein; YhgE/Pip C-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0357 ABC-2 type transporter; YhgE/Pip N-terminal domain-containing protein 573179 8413348 Apar_0499 Atopobium parvulum DSM 20469 YhgE/Pip N-terminal domain-containing protein YP_003179521.1 570549 R 521095 CDS YP_003179522.1 257784305 8413349 573405..574130 1 NC_013203.1 PFAM: regulatory protein TetR; KEGG: afw:Anae109_2507 TetR family transcriptional regulator; TetR family transcriptional regulator 574130 8413349 Apar_0500 Atopobium parvulum DSM 20469 TetR family transcriptional regulator YP_003179522.1 573405 D 521095 CDS YP_003179523.1 257784306 8413350 574248..575510 1 NC_013203.1 KEGG: bcr:BCAH187_A4904 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 575510 8413350 Apar_0501 Atopobium parvulum DSM 20469 S-adenosylmethionine synthetase YP_003179523.1 574248 D 521095 CDS YP_003179524.1 257784307 8413351 complement(575516..577702) 1 NC_013203.1 hypothetical protein 577702 8413351 Apar_0502 Atopobium parvulum DSM 20469 hypothetical protein YP_003179524.1 575516 R 521095 CDS YP_003179525.1 257784308 8413354 complement(578144..579793) 1 NC_013203.1 TIGRFAM: L-serine dehydratase, iron-sulfur- dependent, alpha subunit; L-serine dehydratase, iron- sulfur-dependent, beta subunit; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; amino acid-binding ACT domain protein; KEGG: bha:BH2496 L-serine dehydratase alpha subunit; L-serine dehydratase, iron-sulfur-dependent subunit alpha 579793 8413354 Apar_0503 Atopobium parvulum DSM 20469 L-serine dehydratase, iron-sulfur-dependent subunit alpha YP_003179525.1 578144 R 521095 CDS YP_003179526.1 257784309 8413355 complement(579927..581441) 1 NC_013203.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: GTS2; non-discriminatory gln-glu-trna synthetase; K01885 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 581441 8413355 Apar_0504 Atopobium parvulum DSM 20469 glutamyl-tRNA synthetase YP_003179526.1 579927 R 521095 CDS YP_003179527.1 257784310 8413356 complement(581534..582502) 1 NC_013203.1 hypothetical protein 582502 8413356 Apar_0505 Atopobium parvulum DSM 20469 hypothetical protein YP_003179527.1 581534 R 521095 CDS YP_003179528.1 257784311 8413357 582659..584017 1 NC_013203.1 catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 584017 8413357 Apar_0506 Atopobium parvulum DSM 20469 putative aminopeptidase 2 YP_003179528.1 582659 D 521095 CDS YP_003179529.1 257784312 8413358 584091..584846 1 NC_013203.1 KEGG: sfu:Sfum_1332 spermine synthase; spermine synthase 584846 8413358 Apar_0507 Atopobium parvulum DSM 20469 spermine synthase YP_003179529.1 584091 D 521095 CDS YP_003179530.1 257784313 8413359 585039..586670 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hhe:HH0684 multidrug resistance protein MsbA; ABC transporter-like protein 586670 8413359 Apar_0508 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179530.1 585039 D 521095 CDS YP_003179531.1 257784314 8413360 complement(586737..587999) 1 NC_013203.1 PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_1701 major facilitator transporter; major facilitator superfamily protein 587999 8413360 Apar_0509 Atopobium parvulum DSM 20469 major facilitator superfamily protein YP_003179531.1 586737 R 521095 CDS YP_003179532.1 257784315 8413361 complement(588153..589751) 1 NC_013203.1 PFAM: Domain of unknown function DUF1858; PAS fold- 4 domain protein; Hemerythrin HHE cation binding domain protein; KEGG: dvm:DvMF_1059 putative PAS/PAC sensor protein; putative PAS/PAC sensor protein 589751 8413361 Apar_0510 Atopobium parvulum DSM 20469 putative PAS/PAC sensor protein YP_003179532.1 588153 R 521095 CDS YP_003179533.1 257784316 8413362 complement(589911..590189) 1 NC_013203.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: sun:SUN_2119 DNA-damage-inducible protein J; RelB/DinJ family addiction module antitoxin 590189 8413362 Apar_0511 Atopobium parvulum DSM 20469 RelB/DinJ family addiction module antitoxin YP_003179533.1 589911 R 521095 CDS YP_003179534.1 257784317 8413363 complement(590308..591483) 1 NC_013203.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bcz:BCZK4801 endonuclease/exonuclease/phosphatase family protein; endonuclease/exonuclease/phosphatase 591483 8413363 Apar_0512 Atopobium parvulum DSM 20469 endonuclease/exonuclease/phosphatase YP_003179534.1 590308 R 521095 CDS YP_003179535.1 257784318 8413364 591561..592712 1 NC_013203.1 PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class V; KEGG: bsu:BSU31400 hypothetical protein; class I and II aminotransferase 592712 8413364 Apar_0513 Atopobium parvulum DSM 20469 class I and II aminotransferase YP_003179535.1 591561 D 521095 CDS YP_003179536.1 257784319 8413365 592941..594245 1 NC_013203.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ddcA; Orn/DAP/Arg decarboxylase 2 domain- containing protein; diaminopimelate decarboxylase 594245 8413365 Apar_0514 Atopobium parvulum DSM 20469 diaminopimelate decarboxylase YP_003179536.1 592941 D 521095 CDS YP_003179537.1 257784320 8413366 594261..595154 1 NC_013203.1 KEGG: pap:PSPA7_4387 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 595154 8413366 Apar_0515 Atopobium parvulum DSM 20469 dihydrodipicolinate synthase YP_003179537.1 594261 D 521095 CDS YP_003179538.1 257784321 8413367 595147..595863 1 NC_013203.1 KEGG: nis:NIS_1548 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 595863 8413367 Apar_0516 Atopobium parvulum DSM 20469 dihydrodipicolinate reductase YP_003179538.1 595147 D 521095 CDS YP_003179539.1 257784322 8413368 595918..596619 1 NC_013203.1 PFAM: Tetrahydrodipicolinate succinyltransferase domain protein; transferase hexapeptide repeat containing protein; KEGG: bha:BH2669 tetrahydrodipicolinate succinylase; tetrahydrodipicolinate succinyltransferase domain-containing protein 596619 8413368 Apar_0517 Atopobium parvulum DSM 20469 tetrahydrodipicolinate succinyltransferase domain-containing protein YP_003179539.1 595918 D 521095 CDS YP_003179540.1 257784323 8413369 596630..597847 1 NC_013203.1 KEGG: gur:Gura_1716 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA- guanine transglycosylase, various specificities; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 597847 8413369 Apar_0518 Atopobium parvulum DSM 20469 queuine tRNA-ribosyltransferase YP_003179540.1 596630 D 521095 CDS YP_003179541.1 257784324 8413370 598042..601404 1 NC_013203.1 KEGG: bsu:BSU27620 hypothetical protein; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; phosphoesterase DHHA1; SMART: helicase domain protein; DEAD-like helicase; single-stranded-DNA-specific exonuclease RecJ 601404 8413370 Apar_0519 Atopobium parvulum DSM 20469 single-stranded-DNA-specific exonuclease RecJ YP_003179541.1 598042 D 521095 CDS YP_003179542.1 257784325 8413371 601397..603742 1 NC_013203.1 KEGG: bha:BH1242 GTP pyrophosphokinase (stringent response); TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 603742 8413371 Apar_0520 Atopobium parvulum DSM 20469 (p)ppGpp synthetase I SpoT/RelA YP_003179542.1 601397 D 521095 CDS YP_003179543.1 257784326 8413372 603735..604511 1 NC_013203.1 PFAM: beta-lactamase domain protein; KEGG: dol:Dole_2072 beta-lactamase domain- containing protein; beta-lactamase domain-containing protein 604511 8413372 Apar_0521 Atopobium parvulum DSM 20469 beta-lactamase domain-containing protein YP_003179543.1 603735 D 521095 CDS YP_003179544.1 257784327 8413374 604917..605498 1 NC_013203.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: dde:Dde_2638 translation initiation factor IF- 3; translation initiation factor IF-3 605498 8413374 Apar_0522 Atopobium parvulum DSM 20469 translation initiation factor IF-3 YP_003179544.1 604917 D 521095 CDS YP_003179545.1 257784328 8413375 605500..605700 1 NC_013203.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: bsu:BSU28860 50S ribosomal protein L35; 50S ribosomal protein L35 605700 8413375 Apar_0523 Atopobium parvulum DSM 20469 50S ribosomal protein L35 YP_003179545.1 605500 D 521095 CDS YP_003179546.1 257784329 8413376 605742..606101 1 NC_013203.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: ilo:IL1396 50S ribosomal protein L20; 50S ribosomal protein L20 606101 8413376 Apar_0524 Atopobium parvulum DSM 20469 50S ribosomal protein L20 YP_003179546.1 605742 D 521095 CDS YP_003179547.1 257784330 8413377 complement(606675..607895) 1 NC_013203.1 PFAM: glycosyl transferase family 4; KEGG: bcb:BCB4264_A5322 glycosyl transferase, group 4 family protein; phospho-N-acetylmuramoyl-pentapeptide- transferase 607895 8413377 Apar_0525 Atopobium parvulum DSM 20469 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_003179547.1 606675 R 521095 CDS YP_003179548.1 257784331 8413380 608466..609500 1 NC_013203.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_0616 radical SAM domain protein; radical SAM protein 609500 8413380 Apar_0526 Atopobium parvulum DSM 20469 radical SAM protein YP_003179548.1 608466 D 521095 CDS YP_003179549.1 257784332 8413381 609503..609922 1 NC_013203.1 KEGG: oan:Oant_3509 OmpA/MotB domain protein; hypothetical protein 609922 8413381 Apar_0527 Atopobium parvulum DSM 20469 hypothetical protein YP_003179549.1 609503 D 521095 CDS YP_003179550.1 257784333 8413382 609983..611479 1 NC_013203.1 TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: acp:A2cp1_3805 nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase 611479 8413382 Apar_0528 Atopobium parvulum DSM 20469 nicotinate phosphoribosyltransferase YP_003179550.1 609983 D 521095 CDS YP_003179551.1 257784334 8413383 611551..613395 1 NC_013203.1 KEGG: bha:BH3808 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase 613395 8413383 Apar_0529 Atopobium parvulum DSM 20469 arginyl-tRNA synthetase YP_003179551.1 611551 D 521095 CDS YP_003179552.1 257784335 8413384 613726..614406 1 NC_013203.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mxa:MXAN_1760 transcriptional regulator, MarR family; MarR family transcriptional regulator 614406 8413384 Apar_0530 Atopobium parvulum DSM 20469 MarR family transcriptional regulator YP_003179552.1 613726 D 521095 CDS YP_003179553.1 257784336 8413385 614647..616752 1 NC_013203.1 KEGG: nis:NIS_1455 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; HMG-I and HMG-Y DNA-binding domain protein; Rho termination factor RNA-binding; SMART: AAA ATPase; Cold shock protein; HMG-I and HMG-Y DNA-binding domain protein; transcription termination factor Rho 616752 8413385 Apar_0531 Atopobium parvulum DSM 20469 transcription termination factor Rho YP_003179553.1 614647 D 521095 CDS YP_003179554.1 257784337 8413386 617114..618496 1 NC_013203.1 KEGG: hypothetical protein; hypothetical protein 618496 8413386 Apar_0532 Atopobium parvulum DSM 20469 hypothetical protein YP_003179554.1 617114 D 521095 CDS YP_003179555.1 257784338 8413387 618688..619869 1 NC_013203.1 PFAM: Extracellular ligand-binding receptor; KEGG: mxa:MXAN_6665 putative branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 619869 8413387 Apar_0533 Atopobium parvulum DSM 20469 extracellular ligand-binding receptor YP_003179555.1 618688 D 521095 CDS YP_003179556.1 257784339 8413388 619885..620757 1 NC_013203.1 PFAM: inner-membrane translocator; KEGG: gbm:Gbem_1943 inner-membrane translocator; inner-membrane translocator 620757 8413388 Apar_0534 Atopobium parvulum DSM 20469 inner-membrane translocator YP_003179556.1 619885 D 521095 CDS YP_003179557.1 257784340 8413389 620768..621973 1 NC_013203.1 PFAM: inner-membrane translocator; KEGG: bba:Bd3387 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 621973 8413389 Apar_0535 Atopobium parvulum DSM 20469 inner-membrane translocator YP_003179557.1 620768 D 521095 CDS YP_003179558.1 257784341 8413390 621979..622824 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bba:Bd3388 branched-chain amino acid transport system; ABC transporter-like protein 622824 8413390 Apar_0536 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179558.1 621979 D 521095 CDS YP_003179559.1 257784342 8413391 622824..623573 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_1946 ABC transporter related protein; ABC transporter-like protein 623573 8413391 Apar_0537 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179559.1 622824 D 521095 CDS YP_003179560.1 257784343 8413392 complement(623685..624614) 1 NC_013203.1 KEGG: sus:Acid_0902 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; homoserine kinase 624614 8413392 Apar_0538 Atopobium parvulum DSM 20469 homoserine kinase YP_003179560.1 623685 R 521095 CDS YP_003179561.1 257784344 8413393 complement(624637..626145) 1 NC_013203.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 626145 8413393 Apar_0539 Atopobium parvulum DSM 20469 threonine synthase YP_003179561.1 624637 R 521095 CDS YP_003179562.1 257784345 8413394 626380..627519 1 NC_013203.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: abu:Abu_0158 homoserine dehydrogenase; Homoserine dehydrogenase 627519 8413394 Apar_0540 Atopobium parvulum DSM 20469 Homoserine dehydrogenase YP_003179562.1 626380 D 521095 CDS YP_003179563.1 257784346 8413395 627522..628850 1 NC_013203.1 KEGG: bha:BH1500 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 628850 8413395 Apar_0541 Atopobium parvulum DSM 20469 aspartate kinase YP_003179563.1 627522 D 521095 CDS YP_003179564.1 257784347 8413396 628853..629875 1 NC_013203.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; KEGG: bha:BH2401 aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 629875 8413396 Apar_0542 Atopobium parvulum DSM 20469 aspartate-semialdehyde dehydrogenase YP_003179564.1 628853 D 521095 CDS YP_003179565.1 257784348 8413397 630294..630713 1 NC_013203.1 KEGG: pmu:PM1699 hypothetical protein; hypothetical protein 630713 8413397 Apar_0543 Atopobium parvulum DSM 20469 hypothetical protein YP_003179565.1 630294 D 521095 CDS YP_003179566.1 257784349 8413398 630726..631343 1 NC_013203.1 KEGG: vei:Veis_2445 hypothetical protein; hypothetical protein 631343 8413398 Apar_0544 Atopobium parvulum DSM 20469 hypothetical protein YP_003179566.1 630726 D 521095 CDS YP_003179567.1 257784350 8413399 631452..631616 1 NC_013203.1 hypothetical protein 631616 8413399 Apar_0545 Atopobium parvulum DSM 20469 hypothetical protein YP_003179567.1 631452 D 521095 CDS YP_003179568.1 257784351 8413400 632060..633271 1 NC_013203.1 PFAM: integrase family protein; KEGG: bce:BC1272 DNA integration/recombination/invertion protein; integrase family protein 633271 8413400 Apar_0546 Atopobium parvulum DSM 20469 integrase family protein YP_003179568.1 632060 D 521095 CDS YP_003179569.1 257784352 8413401 complement(633282..633824) 1 NC_013203.1 hypothetical protein 633824 8413401 Apar_0547 Atopobium parvulum DSM 20469 hypothetical protein YP_003179569.1 633282 R 521095 CDS YP_003179570.1 257784353 8413402 complement(633868..634785) 1 NC_013203.1 hypothetical protein 634785 8413402 Apar_0548 Atopobium parvulum DSM 20469 hypothetical protein YP_003179570.1 633868 R 521095 CDS YP_003179571.1 257784354 8413403 complement(634907..635935) 1 NC_013203.1 KEGG: vvu:VV2_1003 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; BRCT domain protein; SMART: Exonuclease; BRCT domain protein; DNA polymerase III subunit epsilon 635935 8413403 Apar_0549 Atopobium parvulum DSM 20469 DNA polymerase III subunit epsilon YP_003179571.1 634907 R 521095 CDS YP_003179572.1 257784355 8413404 complement(635981..636181) 1 NC_013203.1 KEGG: zmo:ZMO0901 hypothetical protein; hypothetical protein 636181 8413404 Apar_0550 Atopobium parvulum DSM 20469 hypothetical protein YP_003179572.1 635981 R 521095 CDS YP_003179573.1 257784356 8413405 complement(636290..636922) 1 NC_013203.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; SMART: helix-turn-helix domain protein; KEGG: btr:Btr_0553 hypothetical protein; XRE family transcriptional regulator 636922 8413405 Apar_0551 Atopobium parvulum DSM 20469 XRE family transcriptional regulator YP_003179573.1 636290 R 521095 CDS YP_003179574.1 257784357 8413406 637062..637277 1 NC_013203.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sbn:Sbal195_3495 putative phage repressor; XRE family transcriptional regulator 637277 8413406 Apar_0552 Atopobium parvulum DSM 20469 XRE family transcriptional regulator YP_003179574.1 637062 D 521095 CDS YP_003179575.1 257784358 8413407 637841..638044 1 NC_013203.1 hypothetical protein 638044 8413407 Apar_0553 Atopobium parvulum DSM 20469 hypothetical protein YP_003179575.1 637841 D 521095 CDS YP_003179576.1 257784359 8413408 638113..638922 1 NC_013203.1 PFAM: BRO domain protein; phage antirepressor protein; KEGG: bpm:BURPS1710b_1644 BRO domain-containing protein; prophage antirepressor 638922 8413408 Apar_0554 Atopobium parvulum DSM 20469 prophage antirepressor YP_003179576.1 638113 D 521095 CDS YP_003179577.1 257784360 8413410 639117..639311 1 NC_013203.1 hypothetical protein 639311 8413410 Apar_0556 Atopobium parvulum DSM 20469 hypothetical protein YP_003179577.1 639117 D 521095 CDS YP_003179578.1 257784361 8413411 639301..639669 1 NC_013203.1 hypothetical protein 639669 8413411 Apar_0557 Atopobium parvulum DSM 20469 hypothetical protein YP_003179578.1 639301 D 521095 CDS YP_003179579.1 257784362 8413412 639659..640159 1 NC_013203.1 hypothetical protein 640159 8413412 Apar_0558 Atopobium parvulum DSM 20469 hypothetical protein YP_003179579.1 639659 D 521095 CDS YP_003179580.1 257784363 8413413 640152..640481 1 NC_013203.1 hypothetical protein 640481 8413413 Apar_0559 Atopobium parvulum DSM 20469 hypothetical protein YP_003179580.1 640152 D 521095 CDS YP_003179581.1 257784364 8413414 640474..640803 1 NC_013203.1 hypothetical protein 640803 8413414 Apar_0560 Atopobium parvulum DSM 20469 hypothetical protein YP_003179581.1 640474 D 521095 CDS YP_003179582.1 257784365 8413415 640796..641338 1 NC_013203.1 KEGG: ent:Ent638_1018 putative methyltransferase; putative methyltransferase 641338 8413415 Apar_0561 Atopobium parvulum DSM 20469 putative methyltransferase YP_003179582.1 640796 D 521095 CDS YP_003179583.1 257784366 8413416 641349..641540 1 NC_013203.1 hypothetical protein 641540 8413416 Apar_0562 Atopobium parvulum DSM 20469 hypothetical protein YP_003179583.1 641349 D 521095 CDS YP_003179584.1 257784367 8413417 641709..642149 1 NC_013203.1 KEGG: pag:PLES_25081 hypothetical protein; hypothetical protein 642149 8413417 Apar_0563 Atopobium parvulum DSM 20469 hypothetical protein YP_003179584.1 641709 D 521095 CDS YP_003179585.1 257784368 8413418 642308..642499 1 NC_013203.1 hypothetical protein 642499 8413418 Apar_0564 Atopobium parvulum DSM 20469 hypothetical protein YP_003179585.1 642308 D 521095 CDS YP_003179586.1 257784369 8413419 642499..642675 1 NC_013203.1 hypothetical protein 642675 8413419 Apar_0565 Atopobium parvulum DSM 20469 hypothetical protein YP_003179586.1 642499 D 521095 CDS YP_003179587.1 257784370 8413420 642675..642902 1 NC_013203.1 hypothetical protein 642902 8413420 Apar_0566 Atopobium parvulum DSM 20469 hypothetical protein YP_003179587.1 642675 D 521095 CDS YP_003179588.1 257784371 8413421 642899..644074 1 NC_013203.1 PFAM: integrase family protein; KEGG: bcb:BCB4264_A2589 DNA integration/recombination/invertion protein; integrase family protein 644074 8413421 Apar_0567 Atopobium parvulum DSM 20469 integrase family protein YP_003179588.1 642899 D 521095 CDS YP_003179589.1 257784372 8413422 644240..644545 1 NC_013203.1 hypothetical protein 644545 8413422 Apar_0568 Atopobium parvulum DSM 20469 hypothetical protein YP_003179589.1 644240 D 521095 CDS YP_003179590.1 257784373 8413423 644532..644777 1 NC_013203.1 hypothetical protein 644777 8413423 Apar_0569 Atopobium parvulum DSM 20469 hypothetical protein YP_003179590.1 644532 D 521095 CDS YP_003179591.1 257784374 8413424 644787..645209 1 NC_013203.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: nis:NIS_1165 single-strand DNA binding protein; single-strand binding protein 645209 8413424 Apar_0570 Atopobium parvulum DSM 20469 single-strand binding protein YP_003179591.1 644787 D 521095 CDS YP_003179592.1 257784375 8413425 645661..646140 1 NC_013203.1 hypothetical protein 646140 8413425 Apar_0571 Atopobium parvulum DSM 20469 hypothetical protein YP_003179592.1 645661 D 521095 CDS YP_003179593.1 257784376 8413426 646404..646511 1 NC_013203.1 hypothetical protein 646511 8413426 Apar_0572 Atopobium parvulum DSM 20469 hypothetical protein YP_003179593.1 646404 D 521095 CDS YP_003179594.1 257784377 8413427 646498..646680 1 NC_013203.1 hypothetical protein 646680 8413427 Apar_0573 Atopobium parvulum DSM 20469 hypothetical protein YP_003179594.1 646498 D 521095 CDS YP_003179595.1 257784378 8413428 646812..647120 1 NC_013203.1 SMART: HNH nuclease; HNH nuclease 647120 8413428 Apar_0574 Atopobium parvulum DSM 20469 HNH nuclease YP_003179595.1 646812 D 521095 CDS YP_003179596.1 257784379 8413429 647226..647471 1 NC_013203.1 hypothetical protein 647471 8413429 Apar_0575 Atopobium parvulum DSM 20469 hypothetical protein YP_003179596.1 647226 D 521095 CDS YP_003179597.1 257784380 8413430 647471..648961 1 NC_013203.1 hypothetical protein 648961 8413430 Apar_0576 Atopobium parvulum DSM 20469 hypothetical protein YP_003179597.1 647471 D 521095 CDS YP_003179598.1 257784381 8413431 648958..650424 1 NC_013203.1 PFAM: protein of unknown function DUF1483; hypothetical protein 650424 8413431 Apar_0577 Atopobium parvulum DSM 20469 hypothetical protein YP_003179598.1 648958 D 521095 CDS YP_003179599.1 257784382 8413432 650405..651589 1 NC_013203.1 hypothetical protein 651589 8413432 Apar_0578 Atopobium parvulum DSM 20469 hypothetical protein YP_003179599.1 650405 D 521095 CDS YP_003179600.1 257784383 8413433 651785..652237 1 NC_013203.1 KEGG: bce:BC1893 scaffold protein; hypothetical protein 652237 8413433 Apar_0579 Atopobium parvulum DSM 20469 hypothetical protein YP_003179600.1 651785 D 521095 CDS YP_003179601.1 257784384 8413434 652253..653137 1 NC_013203.1 PFAM: major capsid protein HK97; KEGG: mes:Meso_1895 phage major capsid protein, HK97 family; major capsid protein HK97 653137 8413434 Apar_0580 Atopobium parvulum DSM 20469 major capsid protein HK97 YP_003179601.1 652253 D 521095 CDS YP_003179602.1 257784385 8413435 653153..653572 1 NC_013203.1 hypothetical protein 653572 8413435 Apar_0581 Atopobium parvulum DSM 20469 hypothetical protein YP_003179602.1 653153 D 521095 CDS YP_003179603.1 257784386 8413436 653559..653897 1 NC_013203.1 hypothetical protein 653897 8413436 Apar_0582 Atopobium parvulum DSM 20469 hypothetical protein YP_003179603.1 653559 D 521095 CDS YP_003179604.1 257784387 8413437 653890..654186 1 NC_013203.1 hypothetical protein 654186 8413437 Apar_0583 Atopobium parvulum DSM 20469 hypothetical protein YP_003179604.1 653890 D 521095 CDS YP_003179605.1 257784388 8413438 654183..654533 1 NC_013203.1 hypothetical protein 654533 8413438 Apar_0584 Atopobium parvulum DSM 20469 hypothetical protein YP_003179605.1 654183 D 521095 CDS YP_003179606.1 257784389 8413439 654542..655183 1 NC_013203.1 hypothetical protein 655183 8413439 Apar_0585 Atopobium parvulum DSM 20469 hypothetical protein YP_003179606.1 654542 D 521095 CDS YP_003179607.1 257784390 8413440 655206..655607 1 NC_013203.1 hypothetical protein 655607 8413440 Apar_0586 Atopobium parvulum DSM 20469 hypothetical protein YP_003179607.1 655206 D 521095 CDS YP_003179608.1 257784391 8413441 655739..655981 1 NC_013203.1 hypothetical protein 655981 8413441 Apar_0587 Atopobium parvulum DSM 20469 hypothetical protein YP_003179608.1 655739 D 521095 CDS YP_003179609.1 257784392 8413442 655992..658871 1 NC_013203.1 TIGRFAM: phage tape measure protein; KEGG: bcz:BCZK3413 prophage membrane protein; phage tape measure protein 658871 8413442 Apar_0588 Atopobium parvulum DSM 20469 phage tape measure protein YP_003179609.1 655992 D 521095 CDS YP_003179610.1 257784393 8413443 658864..659694 1 NC_013203.1 hypothetical protein 659694 8413443 Apar_0589 Atopobium parvulum DSM 20469 hypothetical protein YP_003179610.1 658864 D 521095 CDS YP_003179611.1 257784394 8413444 659682..661247 1 NC_013203.1 KEGG: bpl:BURPS1106A_A2802 haemagglutinin; hypothetical protein 661247 8413444 Apar_0590 Atopobium parvulum DSM 20469 hypothetical protein YP_003179611.1 659682 D 521095 CDS YP_003179612.1 257784395 8413445 661247..661471 1 NC_013203.1 hypothetical protein 661471 8413445 Apar_0591 Atopobium parvulum DSM 20469 hypothetical protein YP_003179612.1 661247 D 521095 CDS YP_003179613.1 257784396 8413446 661473..662279 1 NC_013203.1 hypothetical protein 662279 8413446 Apar_0592 Atopobium parvulum DSM 20469 hypothetical protein YP_003179613.1 661473 D 521095 CDS YP_003179614.1 257784397 8413447 662291..662620 1 NC_013203.1 hypothetical protein 662620 8413447 Apar_0593 Atopobium parvulum DSM 20469 hypothetical protein YP_003179614.1 662291 D 521095 CDS YP_003179615.1 257784398 8413448 662661..662963 1 NC_013203.1 TIGRFAM: holin, phage phi LC3 family; PFAM: Holin phage phi LC3; holin, phage phi LC3 family 662963 8413448 Apar_0594 Atopobium parvulum DSM 20469 holin, phage phi LC3 family YP_003179615.1 662661 D 521095 CDS YP_003179616.1 257784399 8413449 662966..664018 1 NC_013203.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; putative cell wall binding repeat-containing protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease; N-acetylmuramoyl-L-alanine amidase family 2 protein 664018 8413449 Apar_0595 Atopobium parvulum DSM 20469 N-acetylmuramoyl-L-alanine amidase family 2 protein YP_003179616.1 662966 D 521095 CDS YP_003179617.1 257784400 8413450 664233..664544 1 NC_013203.1 hypothetical protein 664544 8413450 Apar_0596 Atopobium parvulum DSM 20469 hypothetical protein YP_003179617.1 664233 D 521095 CDS YP_003179618.1 257784401 8413451 664596..665024 1 NC_013203.1 hypothetical protein 665024 8413451 Apar_0597 Atopobium parvulum DSM 20469 hypothetical protein YP_003179618.1 664596 D 521095 CDS YP_003179619.1 257784402 8413453 665604..666794 1 NC_013203.1 PFAM: aminotransferase class I and II; KEGG: bsu:BSU31440 aminotransferase; class I and II aminotransferase 666794 8413453 Apar_0598 Atopobium parvulum DSM 20469 class I and II aminotransferase YP_003179619.1 665604 D 521095 CDS YP_003179620.1 257784403 8413456 667324..668340 1 NC_013203.1 TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: bcb:BCB4264_A3817 1-phosphofructokinase; 1-phosphofructokinase 668340 8413456 Apar_0599 Atopobium parvulum DSM 20469 1-phosphofructokinase YP_003179620.1 667324 D 521095 CDS YP_003179621.1 257784404 8413457 668626..670329 1 NC_013203.1 KEGG: bsu:BSU13910 phosphotransferase system (PTS) enzyme I; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; phosphoenolpyruvate-protein phosphotransferase 670329 8413457 Apar_0600 Atopobium parvulum DSM 20469 phosphoenolpyruvate-protein phosphotransferase YP_003179621.1 668626 D 521095 CDS YP_003179622.1 257784405 8413458 complement(670463..671392) 1 NC_013203.1 PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: bha:BH1953 hypothetical protein; diacylglycerol kinase catalytic subunit 671392 8413458 Apar_0601 Atopobium parvulum DSM 20469 diacylglycerol kinase catalytic subunit YP_003179622.1 670463 R 521095 CDS YP_003179623.1 257784406 8413459 671565..672419 1 NC_013203.1 PFAM: ABC-2 type transporter; KEGG: apl:APL_1463 putative ABC-transporter; ABC-2 type transporter 672419 8413459 Apar_0602 Atopobium parvulum DSM 20469 ABC-2 type transporter YP_003179623.1 671565 D 521095 CDS YP_003179624.1 257784407 8413460 complement(672427..673146) 1 NC_013203.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH0873 transcriptional repressor of the trehalose operon; GntR family transcriptional regulator 673146 8413460 Apar_0603 Atopobium parvulum DSM 20469 GntR family transcriptional regulator YP_003179624.1 672427 R 521095 CDS YP_003179625.1 257784408 8413461 673442..674752 1 NC_013203.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0001624 putative sugar ABC transporter, substrate-binding protein; family 1 extracellular solute-binding protein 674752 8413461 Apar_0604 Atopobium parvulum DSM 20469 family 1 extracellular solute-binding protein YP_003179625.1 673442 D 521095 CDS YP_003179626.1 257784409 8413462 674836..675690 1 NC_013203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU30280 sugar transport; binding-protein-dependent transport system inner membrane protein 675690 8413462 Apar_0605 Atopobium parvulum DSM 20469 binding-protein-dependent transport system inner membrane protein YP_003179626.1 674836 D 521095 CDS YP_003179627.1 257784410 8413463 675690..676529 1 NC_013203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120383 putative permease component of ABC transporter; binding-protein-dependent transport system inner membrane protein 676529 8413463 Apar_0606 Atopobium parvulum DSM 20469 binding-protein-dependent transport system inner membrane protein YP_003179627.1 675690 D 521095 CDS YP_003179628.1 257784411 8413464 676577..677770 1 NC_013203.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ban:BA4232 sugar ABC transporter, ATP-binding protein; ABC transporter-like protein 677770 8413464 Apar_0607 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179628.1 676577 D 521095 CDS YP_003179629.1 257784412 8413465 677836..679329 1 NC_013203.1 KEGG: 4-alpha-glucanotransferase; K00705 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 679329 8413465 Apar_0608 Atopobium parvulum DSM 20469 4-alpha-glucanotransferase YP_003179629.1 677836 D 521095 CDS YP_003179630.1 257784413 8413466 679329..681593 1 NC_013203.1 KEGG: ftn:FTN_0517 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 681593 8413466 Apar_0609 Atopobium parvulum DSM 20469 glycogen/starch/alpha-glucan phosphorylase YP_003179630.1 679329 D 521095 CDS YP_003179631.1 257784414 8413469 682139..683470 1 NC_013203.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 683470 8413469 Apar_0610 Atopobium parvulum DSM 20469 glutamate dehydrogenase YP_003179631.1 682139 D 521095 CDS YP_003179632.1 257784415 8413470 complement(683700..684299) 1 NC_013203.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: cja:CJA_0666 possible DNA-3-methyladenine glycosidase; DNA-3-methyladenine glycosylase 684299 8413470 Apar_0611 Atopobium parvulum DSM 20469 DNA-3-methyladenine glycosylase YP_003179632.1 683700 R 521095 CDS YP_003179633.1 257784416 8413471 684466..685719 1 NC_013203.1 KEGG: pca:Pcar_1613 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; carbamoyl-phosphate synthase small subunit 685719 8413471 Apar_0612 Atopobium parvulum DSM 20469 carbamoyl-phosphate synthase small subunit YP_003179633.1 684466 D 521095 CDS YP_003179634.1 257784417 8413472 685719..688940 1 NC_013203.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: mgm:Mmc1_3018 carbamoyl-phosphate synthase large subunit; carbamoyl-phosphate synthase large subunit 688940 8413472 Apar_0613 Atopobium parvulum DSM 20469 carbamoyl-phosphate synthase large subunit YP_003179634.1 685719 D 521095 CDS YP_003179635.1 257784418 8413474 689231..690655 1 NC_013203.1 TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; KEGG: bha:BH3053 trigger factor; trigger factor 690655 8413474 Apar_0614 Atopobium parvulum DSM 20469 trigger factor YP_003179635.1 689231 D 521095 CDS YP_003179636.1 257784419 8413475 690787..691395 1 NC_013203.1 PFAM: peptidase S14 ClpP; KEGG: bpt:Bpet2791 ATP-dependent Clp protease proteolytic subunit; endopeptidase Clp 691395 8413475 Apar_0615 Atopobium parvulum DSM 20469 endopeptidase Clp YP_003179636.1 690787 D 521095 CDS YP_003179637.1 257784420 8413476 691422..692720 1 NC_013203.1 KEGG: bcr:BCAH187_A4608 ATP-dependent Clp protease, ATP-binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 692720 8413476 Apar_0616 Atopobium parvulum DSM 20469 ATP-dependent Clp protease ATP-binding subunit ClpX YP_003179637.1 691422 D 521095 CDS YP_003179638.1 257784421 8413477 complement(692763..693839) 1 NC_013203.1 PFAM: glycosyl transferase family 8; KEGG: eta:ETA_13400 glycosyl transferase; glycosyl transferase family protein 693839 8413477 Apar_0617 Atopobium parvulum DSM 20469 glycosyl transferase family protein YP_003179638.1 692763 R 521095 CDS YP_003179639.1 257784422 8413478 complement(693926..694696) 1 NC_013203.1 PFAM: TatD-related deoxyribonuclease; KEGG: atc:AGR_pAT_25 putative Mg-dependent DNase; TatD-related deoxyribonuclease 694696 8413478 Apar_0618 Atopobium parvulum DSM 20469 TatD-related deoxyribonuclease YP_003179639.1 693926 R 521095 CDS YP_003179640.1 257784423 8413479 complement(694689..695423) 1 NC_013203.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: tbd:Tbd_0522 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD binding protein 695423 8413479 Apar_0619 Atopobium parvulum DSM 20469 UBA/THIF-type NAD/FAD binding protein YP_003179640.1 694689 R 521095 CDS YP_003179641.1 257784424 8413480 695607..698294 1 NC_013203.1 TIGRFAM: valyl-tRNA synthetase; KEGG: gsu:GSU2045 valyl-tRNA synthetase; valyl-tRNA synthetase 698294 8413480 Apar_0620 Atopobium parvulum DSM 20469 valyl-tRNA synthetase YP_003179641.1 695607 D 521095 CDS YP_003179642.1 257784425 8413481 698372..700045 1 NC_013203.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: nme:NMB1839 formate--tetrahydrofolate ligase; Formate--tetrahydrofolate ligase 700045 8413481 Apar_0621 Atopobium parvulum DSM 20469 Formate--tetrahydrofolate ligase YP_003179642.1 698372 D 521095 CDS YP_003179643.1 257784426 8413482 700045..700698 1 NC_013203.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: gbe:GbCGDNIH1_0051 methenyltetrahydrofolate cyclohydrolase; formiminotransferase-cyclodeaminase 700698 8413482 Apar_0622 Atopobium parvulum DSM 20469 formiminotransferase-cyclodeaminase YP_003179643.1 700045 D 521095 CDS YP_003179644.1 257784427 8413483 700700..701569 1 NC_013203.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: bac:BamMC406_2050 methenyltetrahydrofolate cyclohydrolase; tetrahydrofolate dehydrogenase/cyclohydrolase 701569 8413483 Apar_0623 Atopobium parvulum DSM 20469 tetrahydrofolate dehydrogenase/cyclohydrolase YP_003179644.1 700700 D 521095 CDS YP_003179645.1 257784428 8413484 701591..702178 1 NC_013203.1 KEGG: bsu:BSU22780 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; GTP cyclohydrolase I 702178 8413484 Apar_0624 Atopobium parvulum DSM 20469 GTP cyclohydrolase I YP_003179645.1 701591 D 521095 CDS YP_003179646.1 257784429 8413485 702193..703617 1 NC_013203.1 KEGG: gur:Gura_3277 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 703617 8413485 Apar_0625 Atopobium parvulum DSM 20469 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_003179646.1 702193 D 521095 CDS YP_003179647.1 257784430 8413486 703703..704134 1 NC_013203.1 KEGG: gme:Gmet_3473 response regulator receiver domain-containing protein; hypothetical protein 704134 8413486 Apar_0626 Atopobium parvulum DSM 20469 hypothetical protein YP_003179647.1 703703 D 521095 CDS YP_003179648.1 257784431 8413487 704272..706038 1 NC_013203.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: bcr:BCAH187_A2489 threonyl-tRNA synthetase; threonyl-tRNA synthetase 706038 8413487 Apar_0627 Atopobium parvulum DSM 20469 threonyl-tRNA synthetase YP_003179648.1 704272 D 521095 CDS YP_003179649.1 257784432 8413488 706031..706798 1 NC_013203.1 KEGG: mrd:Mrad2831_4408 O-succinylhomoserine (thiol)-lyase; hypothetical protein 706798 8413488 Apar_0628 Atopobium parvulum DSM 20469 hypothetical protein YP_003179649.1 706031 D 521095 CDS YP_003179650.1 257784433 8413489 706866..709484 1 NC_013203.1 PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: kpn:KPN_02199 bifunctional acetaldehyde- CoA/alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 709484 8413489 Apar_0629 Atopobium parvulum DSM 20469 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_003179650.1 706866 D 521095 CDS YP_003179651.1 257784434 8413490 complement(709855..710898) 1 NC_013203.1 hypothetical protein 710898 8413490 Apar_0630 Atopobium parvulum DSM 20469 hypothetical protein YP_003179651.1 709855 R 521095 CDS YP_003179652.1 257784435 8413491 complement(711113..711601) 1 NC_013203.1 PFAM: dihydrofolate reductase region; KEGG: mmw:Mmwyl1_3741 dihydrofolate reductase; dihydrofolate reductase subunit 711601 8413491 Apar_0631 Atopobium parvulum DSM 20469 dihydrofolate reductase subunit YP_003179652.1 711113 R 521095 CDS YP_003179653.1 257784436 8413492 complement(711674..712522) 1 NC_013203.1 KEGG: bsu:BSU17680 thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase 712522 8413492 Apar_0632 Atopobium parvulum DSM 20469 thymidylate synthase YP_003179653.1 711674 R 521095 CDS YP_003179654.1 257784437 8413493 complement(712613..712861) 1 NC_013203.1 hypothetical protein 712861 8413493 Apar_0633 Atopobium parvulum DSM 20469 hypothetical protein YP_003179654.1 712613 R 521095 CDS YP_003179655.1 257784438 8413494 complement(713063..713494) 1 NC_013203.1 PFAM: NUDIX hydrolase; KEGG: gbm:Gbem_3270 NUDIX hydrolase; NUDIX hydrolase 713494 8413494 Apar_0634 Atopobium parvulum DSM 20469 NUDIX hydrolase YP_003179655.1 713063 R 521095 CDS YP_003179656.1 257784439 8413495 complement(713496..714212) 1 NC_013203.1 PFAM: acyl-ACP thioesterase; KEGG: acyl-ACP thioesterase; acyl-ACP thioesterase 714212 8413495 Apar_0635 Atopobium parvulum DSM 20469 acyl-ACP thioesterase YP_003179656.1 713496 R 521095 CDS YP_003179657.1 257784440 8413496 complement(714273..715100) 1 NC_013203.1 PFAM: protein of unknown function DUF1113; KEGG: glo:Glov_2883 metal dependent phosphohydrolase; hypothetical protein 715100 8413496 Apar_0636 Atopobium parvulum DSM 20469 hypothetical protein YP_003179657.1 714273 R 521095 CDS YP_003179658.1 257784441 8413497 complement(715097..715720) 1 NC_013203.1 KEGG: glo:Glov_2883 metal dependent phosphohydrolase; hypothetical protein 715720 8413497 Apar_0637 Atopobium parvulum DSM 20469 hypothetical protein YP_003179658.1 715097 R 521095 CDS YP_003179659.1 257784442 8413498 complement(715843..716772) 1 NC_013203.1 PFAM: diacylglycerol kinase catalytic region; KEGG: oan:Oant_2074 diacylglycerol kinase catalytic region; diacylglycerol kinase catalytic subunit 716772 8413498 Apar_0638 Atopobium parvulum DSM 20469 diacylglycerol kinase catalytic subunit YP_003179659.1 715843 R 521095 CDS YP_003179660.1 257784443 8413499 716862..718001 1 NC_013203.1 KEGG: mag:amb2836 ribonuclease D; TIGRFAM: ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; ribonuclease D 718001 8413499 Apar_0639 Atopobium parvulum DSM 20469 ribonuclease D YP_003179660.1 716862 D 521095 CDS YP_003179661.1 257784444 8413500 718211..718897 1 NC_013203.1 PFAM: peptidase membrane zinc metallopeptidase putative; KEGG: bca:BCE_1656 neutral zinc metallopeptidase, putative; peptidase membrane zinc metallopeptidase putative 718897 8413500 Apar_0640 Atopobium parvulum DSM 20469 peptidase membrane zinc metallopeptidase putative YP_003179661.1 718211 D 521095 CDS YP_003179662.1 257784445 8413501 718900..720249 1 NC_013203.1 KEGG: pap:PSPA7_1339 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 720249 8413501 Apar_0641 Atopobium parvulum DSM 20469 exodeoxyribonuclease VII large subunit YP_003179662.1 718900 D 521095 CDS YP_003179663.1 257784446 8413502 720264..720527 1 NC_013203.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: sse:Ssed_3327 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 720527 8413502 Apar_0642 Atopobium parvulum DSM 20469 exodeoxyribonuclease VII small subunit YP_003179663.1 720264 D 521095 CDS YP_003179664.1 257784447 8413503 720538..720882 1 NC_013203.1 PFAM: histidine triad (HIT) protein; KEGG: abu:Abu_2054 HIT family protein; histidine triad (HIT) protein 720882 8413503 Apar_0643 Atopobium parvulum DSM 20469 histidine triad (HIT) protein YP_003179664.1 720538 D 521095 CDS YP_003179665.1 257784448 8413504 721019..722188 1 NC_013203.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: hhe:HH1308 acetate kinase; acetate kinase 722188 8413504 Apar_0644 Atopobium parvulum DSM 20469 acetate kinase YP_003179665.1 721019 D 521095 CDS YP_003179666.1 257784449 8413505 complement(722258..723199) 1 NC_013203.1 PFAM: Aldose 1-epimerase; KEGG: bcz:BCZK1470 LacX protein; aldose 1-epimerase 723199 8413505 Apar_0645 Atopobium parvulum DSM 20469 aldose 1-epimerase YP_003179666.1 722258 R 521095 CDS YP_003179667.1 257784450 8413506 complement(723329..724309) 1 NC_013203.1 TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; KEGG: phosphate acetyltransferase; phosphate acetyltransferase 724309 8413506 Apar_0646 Atopobium parvulum DSM 20469 phosphate acetyltransferase YP_003179667.1 723329 R 521095 CDS YP_003179668.1 257784451 8413507 724550..725752 1 NC_013203.1 KEGG: pat:Patl_3069 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase 725752 8413507 Apar_0647 Atopobium parvulum DSM 20469 UDP-galactopyranose mutase YP_003179668.1 724550 D 521095 CDS YP_003179669.1 257784452 8413508 725764..726798 1 NC_013203.1 PFAM: glycosyl transferase family 2; KEGG: cko:CKO_05082 hypothetical protein; glycosyl transferase family protein 726798 8413508 Apar_0648 Atopobium parvulum DSM 20469 glycosyl transferase family protein YP_003179669.1 725764 D 521095 CDS YP_003179670.1 257784453 8413509 complement(726876..727538) 1 NC_013203.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bat:BAS4352 Maf-like protein; maf protein 727538 8413509 Apar_0649 Atopobium parvulum DSM 20469 maf protein YP_003179670.1 726876 R 521095 CDS YP_003179671.1 257784454 8413510 complement(727648..727833) 1 NC_013203.1 KEGG: gme:Gmet_0148 4Fe-4S ferredoxin, iron-sulfur binding protein; 4Fe-4S ferredoxin 727833 8413510 Apar_0650 Atopobium parvulum DSM 20469 4Fe-4S ferredoxin YP_003179671.1 727648 R 521095 CDS YP_003179672.1 257784455 8413512 complement(728234..729559) 1 NC_013203.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; KEGG: bsu:BSU08020 hypothetical protein; TrmA family RNA methyltransferase 729559 8413512 Apar_0652 Atopobium parvulum DSM 20469 TrmA family RNA methyltransferase YP_003179672.1 728234 R 521095 CDS YP_003179673.1 257784456 8413513 complement(729560..730609) 1 NC_013203.1 KEGG: ppd:Ppro_0579 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 730609 8413513 Apar_0653 Atopobium parvulum DSM 20469 tryptophanyl-tRNA synthetase YP_003179673.1 729560 R 521095 CDS YP_003179674.1 257784457 8413514 complement(730651..731433) 1 NC_013203.1 KEGG: swd:Swoo_2884 pyruvate formate-lyase activating enzyme; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; pyruvate formate-lyase activating enzyme 731433 8413514 Apar_0654 Atopobium parvulum DSM 20469 pyruvate formate-lyase activating enzyme YP_003179674.1 730651 R 521095 CDS YP_003179675.1 257784458 8413515 complement(731468..731719) 1 NC_013203.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 731719 8413515 Apar_0655 Atopobium parvulum DSM 20469 autonomous glycyl radical cofactor GrcA YP_003179675.1 731468 R 521095 CDS YP_003179676.1 257784459 8413516 complement(731785..733941) 1 NC_013203.1 KEGG: bar:GBAA0509 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate acetyltransferase 733941 8413516 Apar_0656 Atopobium parvulum DSM 20469 formate acetyltransferase YP_003179676.1 731785 R 521095 CDS YP_003179677.1 257784460 8413517 734004..734102 1 NC_013203.1 hypothetical protein 734102 8413517 Apar_0657 Atopobium parvulum DSM 20469 hypothetical protein YP_003179677.1 734004 D 521095 CDS YP_003179678.1 257784461 8413518 734312..734893 1 NC_013203.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: bcb:BCB4264_A4379 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 734893 8413518 Apar_0658 Atopobium parvulum DSM 20469 5-formyltetrahydrofolate cyclo-ligase YP_003179678.1 734312 D 521095 CDS YP_003179679.1 257784462 8413519 complement(734960..735850) 1 NC_013203.1 PFAM: dehydroquinase class II; phosphotransferase system PTS EIIB protein; KEGG: rde:RD1_2651 3-dehydroquinate dehydratase; dehydroquinase class II 735850 8413519 Apar_0659 Atopobium parvulum DSM 20469 dehydroquinase class II YP_003179679.1 734960 R 521095 CDS YP_003179680.1 257784463 8413520 complement(736032..737342) 1 NC_013203.1 PFAM: shikimate kinase; Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5- dehydrogenase; KEGG: sat:SYN_01937 shikimate 5-dehydrogenase; shikimate kinase 737342 8413520 Apar_0660 Atopobium parvulum DSM 20469 shikimate kinase YP_003179680.1 736032 R 521095 CDS YP_003179681.1 257784464 8413521 complement(737332..737604) 1 NC_013203.1 PFAM: Chorismate mutase; KEGG: vfm:VFMJ11_0566 T-protein; Chorismate mutase 737604 8413521 Apar_0661 Atopobium parvulum DSM 20469 Chorismate mutase YP_003179681.1 737332 R 521095 CDS YP_003179682.1 257784465 8413522 complement(737597..738739) 1 NC_013203.1 KEGG: hypothetical protein ; K01736 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; chorismate synthase 738739 8413522 Apar_0662 Atopobium parvulum DSM 20469 chorismate synthase YP_003179682.1 737597 R 521095 CDS YP_003179683.1 257784466 8413523 complement(738740..740020) 1 NC_013203.1 KEGG: neu:NE1964 3-phosphoshikimate 1- carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase 740020 8413523 Apar_0663 Atopobium parvulum DSM 20469 3-phosphoshikimate 1-carboxyvinyltransferase YP_003179683.1 738740 R 521095 CDS YP_003179684.1 257784467 8413524 740124..740750 1 NC_013203.1 PFAM: KDPG and KHG aldolase; KEGG: scl:sce5154 KDPG and KHG aldolase; KDPG and KHG aldolase 740750 8413524 Apar_0664 Atopobium parvulum DSM 20469 KDPG and KHG aldolase YP_003179684.1 740124 D 521095 CDS YP_003179685.1 257784468 8413525 complement(740747..741826) 1 NC_013203.1 KEGG: gme:Gmet_0978 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; 3-dehydroquinate synthase 741826 8413525 Apar_0665 Atopobium parvulum DSM 20469 3-dehydroquinate synthase YP_003179685.1 740747 R 521095 CDS YP_003179686.1 257784469 8413527 742054..744498 1 NC_013203.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ypb:YPTS_0616 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 744498 8413527 Apar_0666 Atopobium parvulum DSM 20469 P-type HAD superfamily ATPase YP_003179686.1 742054 D 521095 CDS YP_003179687.1 257784470 8413528 744532..745653 1 NC_013203.1 KEGG: bur:Bcep18194_C6723 adenylate/guanylate cyclase; hypothetical protein 745653 8413528 Apar_0667 Atopobium parvulum DSM 20469 hypothetical protein YP_003179687.1 744532 D 521095 CDS YP_003179688.1 257784471 8413529 745786..746325 1 NC_013203.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: wsu:WS0363 peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 746325 8413529 Apar_0668 Atopobium parvulum DSM 20469 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_003179688.1 745786 D 521095 CDS YP_003179689.1 257784472 8413530 746357..747760 1 NC_013203.1 SMART: Tetratricopeptide domain protein; KEGG: ubiquitously transcribed sex (x/y) chromosome tetratricopeptide repeat protein ; K11447 histone demethylase; hypothetical protein 747760 8413530 Apar_0669 Atopobium parvulum DSM 20469 hypothetical protein YP_003179689.1 746357 D 521095 CDS YP_003179690.1 257784473 8413531 747832..748875 1 NC_013203.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: gme:Gmet_0918 rod shape-determining protein MreB; MreB/Mrl family cell shape determining protein 748875 8413531 Apar_0670 Atopobium parvulum DSM 20469 MreB/Mrl family cell shape determining protein YP_003179690.1 747832 D 521095 CDS YP_003179691.1 257784474 8413532 748878..749951 1 NC_013203.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: gbm:Gbem_2462 rod shape-determining protein MreC; rod shape-determining protein MreC 749951 8413532 Apar_0671 Atopobium parvulum DSM 20469 rod shape-determining protein MreC YP_003179691.1 748878 D 521095 CDS YP_003179692.1 257784475 8413533 749961..750521 1 NC_013203.1 TIGRFAM: rod shape-determining protein MreD; rod shape-determining protein MreD 750521 8413533 Apar_0672 Atopobium parvulum DSM 20469 rod shape-determining protein MreD YP_003179692.1 749961 D 521095 CDS YP_003179693.1 257784476 8413534 750531..752540 1 NC_013203.1 KEGG: penicillin-binding protein 2; K05515 penicillin binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 752540 8413534 Apar_0673 Atopobium parvulum DSM 20469 penicillin-binding protein 2 YP_003179693.1 750531 D 521095 CDS YP_003179694.1 257784477 8413535 752556..753782 1 NC_013203.1 PFAM: cell cycle protein; KEGG: sfu:Sfum_2588 rod shape-determining protein RodA; cell cycle protein 753782 8413535 Apar_0674 Atopobium parvulum DSM 20469 cell cycle protein YP_003179694.1 752556 D 521095 CDS YP_003179695.1 257784478 8413536 753786..754760 1 NC_013203.1 KEGG: sus:Acid_2702 hypothetical protein; hypothetical protein 754760 8413536 Apar_0675 Atopobium parvulum DSM 20469 hypothetical protein YP_003179695.1 753786 D 521095 CDS YP_003179696.1 257784479 8413537 754774..756639 1 NC_013203.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: glo:Glov_0470 radical SAM domain protein; radical SAM protein 756639 8413537 Apar_0676 Atopobium parvulum DSM 20469 radical SAM protein YP_003179696.1 754774 D 521095 CDS YP_003179697.1 257784480 8413538 756645..757457 1 NC_013203.1 KEGG: afw:Anae109_0737 radical SAM domain- containing protein; hypothetical protein 757457 8413538 Apar_0677 Atopobium parvulum DSM 20469 hypothetical protein YP_003179697.1 756645 D 521095 CDS YP_003179698.1 257784481 8413539 757653..758003 1 NC_013203.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: dal:Dalk_4114 ribosomal protein L21; 50S ribosomal protein L21 758003 8413539 Apar_0678 Atopobium parvulum DSM 20469 50S ribosomal protein L21 YP_003179698.1 757653 D 521095 CDS YP_003179699.1 257784482 8413540 758042..758296 1 NC_013203.1 TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: aba:Acid345_0019 50S ribosomal protein L27; 50S ribosomal protein L27 758296 8413540 Apar_0679 Atopobium parvulum DSM 20469 50S ribosomal protein L27 YP_003179699.1 758042 D 521095 CDS YP_003179700.1 257784483 8413541 758687..759280 1 NC_013203.1 KEGG: bsu:BSU10010 hypothetical protein; hypothetical protein 759280 8413541 Apar_0680 Atopobium parvulum DSM 20469 hypothetical protein YP_003179700.1 758687 D 521095 CDS YP_003179701.1 257784484 8413542 759316..761241 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vha:VIBHAR_05108 ATP-binding ABC transporter; ABC transporter-like protein 761241 8413542 Apar_0681 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179701.1 759316 D 521095 CDS YP_003179702.1 257784485 8413543 761234..761980 1 NC_013203.1 PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein; cobalt transport protein 761980 8413543 Apar_0682 Atopobium parvulum DSM 20469 cobalt transport protein YP_003179702.1 761234 D 521095 CDS YP_003179703.1 257784486 8413544 762053..763501 1 NC_013203.1 TIGRFAM: GTP-binding protein Obg/CgtA; small GTP- binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; KEGG: bsu:BSU27920 GTPase ObgE; GTP-binding protein Obg/CgtA 763501 8413544 Apar_0683 Atopobium parvulum DSM 20469 GTP-binding protein Obg/CgtA YP_003179703.1 762053 D 521095 CDS YP_003179704.1 257784487 8413545 763505..764191 1 NC_013203.1 KEGG: bcy:Bcer98_3058 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 764191 8413545 Apar_0684 Atopobium parvulum DSM 20469 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_003179704.1 763505 D 521095 CDS YP_003179705.1 257784488 8413546 764296..764934 1 NC_013203.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bcr:BCAH187_A4464 conserved hypothetical protein TIGR00488; metal dependent phosphohydrolase 764934 8413546 Apar_0685 Atopobium parvulum DSM 20469 metal dependent phosphohydrolase YP_003179705.1 764296 D 521095 CDS YP_003179706.1 257784489 8413547 764964..765440 1 NC_013203.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: bsu:BSU25620 hypothetical protein; iojap family protein 765440 8413547 Apar_0686 Atopobium parvulum DSM 20469 iojap family protein YP_003179706.1 764964 D 521095 CDS YP_003179707.1 257784490 8413548 complement(765451..766785) 1 NC_013203.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sfu:Sfum_0738 DNA-directed DNA polymerase; DNA-directed DNA polymerase 766785 8413548 Apar_0687 Atopobium parvulum DSM 20469 DNA-directed DNA polymerase YP_003179707.1 765451 R 521095 CDS YP_003179708.1 257784491 8413549 766958..767344 1 NC_013203.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: sit:TM1040_2607 30S ribosomal protein S16; 30S ribosomal protein S16 767344 8413549 Apar_0688 Atopobium parvulum DSM 20469 30S ribosomal protein S16 YP_003179708.1 766958 D 521095 CDS YP_003179709.1 257784492 8413550 767348..767650 1 NC_013203.1 KEGG: mxa:MXAN_3546 KH domain protein; RNA-binding domain-containing protein 767650 8413550 Apar_0689 Atopobium parvulum DSM 20469 RNA-binding domain-containing protein YP_003179709.1 767348 D 521095 CDS YP_003179710.1 257784493 8413551 767716..768174 1 NC_013203.1 KEGG: bar:GBAA3980 16S rRNA-processing protein; 16S rRNA-processing protein 768174 8413551 Apar_0690 Atopobium parvulum DSM 20469 16S rRNA-processing protein YP_003179710.1 767716 D 521095 CDS YP_003179711.1 257784494 8413552 768176..768925 1 NC_013203.1 KEGG: pca:Pcar_2221 tRNA(guanine-N1)- methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 768925 8413552 Apar_0691 Atopobium parvulum DSM 20469 tRNA (guanine-N1)-methyltransferase YP_003179711.1 768176 D 521095 CDS YP_003179712.1 257784495 8413553 768918..769472 1 NC_013203.1 KEGG: sat:SYN_01527 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 769472 8413553 Apar_0692 Atopobium parvulum DSM 20469 signal peptidase I YP_003179712.1 768918 D 521095 CDS YP_003179713.1 257784496 8413554 769506..770420 1 NC_013203.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 770420 glyQ 8413554 glyQ Atopobium parvulum DSM 20469 glycyl-tRNA synthetase subunit alpha YP_003179713.1 769506 D 521095 CDS YP_003179714.1 257784497 8413555 770421..772508 1 NC_013203.1 KEGG: msu:MS1956 glycyl-tRNA synthetase subunit beta; TIGRFAM: glycyl-tRNA synthetase, beta subunit; PFAM: glycyl-tRNA synthetase beta subunit; glycyl-tRNA synthetase subunit beta 772508 8413555 Apar_0694 Atopobium parvulum DSM 20469 glycyl-tRNA synthetase subunit beta YP_003179714.1 770421 D 521095 CDS YP_003179715.1 257784498 8413556 772571..772969 1 NC_013203.1 KEGG: bha:BH1373 hypothetical protein; hypothetical protein 772969 8413556 Apar_0695 Atopobium parvulum DSM 20469 hypothetical protein YP_003179715.1 772571 D 521095 CDS YP_003179716.1 257784499 8413557 773252..776014 1 NC_013203.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 776014 8413557 Apar_0696 Atopobium parvulum DSM 20469 pyruvate phosphate dikinase YP_003179716.1 773252 D 521095 CDS YP_003179717.1 257784500 8413558 776129..777187 1 NC_013203.1 KEGG: ade:Adeh_2590 deoxyguanosinetriphosphate triphosphohydrolase-like protein; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase 777187 8413558 Apar_0697 Atopobium parvulum DSM 20469 deoxyguanosinetriphosphate triphosphohydrolase YP_003179717.1 776129 D 521095 CDS YP_003179718.1 257784501 8413559 777301..777642 1 NC_013203.1 TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: bsu:BSU16040 50S ribosomal protein L19; 50S ribosomal protein L19 777642 8413559 Apar_0698 Atopobium parvulum DSM 20469 50S ribosomal protein L19 YP_003179718.1 777301 D 521095 CDS YP_003179719.1 257784502 8413560 777717..778490 1 NC_013203.1 PFAM: ribonuclease HII/HIII; KEGG: bcz:BCZK3596 ribonuclease HII; Ribonuclease H 778490 8413560 Apar_0699 Atopobium parvulum DSM 20469 Ribonuclease H YP_003179719.1 777717 D 521095 CDS YP_003179720.1 257784503 8413561 778703..779221 1 NC_013203.1 PFAM: protein of unknown function UPF0102; KEGG: gsu:GSU0650 hypothetical protein; hypothetical protein 779221 8413561 Apar_0700 Atopobium parvulum DSM 20469 hypothetical protein YP_003179720.1 778703 D 521095 CDS YP_003179721.1 257784504 8413562 779218..780714 1 NC_013203.1 KEGG: aba:Acid345_3233 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 780714 8413562 Apar_0701 Atopobium parvulum DSM 20469 Mg chelatase subunit ChlI YP_003179721.1 779218 D 521095 CDS YP_003179722.1 257784505 8413563 780717..781592 1 NC_013203.1 PFAM: SMF family protein; KEGG: dar:Daro_0019 smf protein; SMF family protein 781592 8413563 Apar_0702 Atopobium parvulum DSM 20469 SMF family protein YP_003179722.1 780717 D 521095 CDS YP_003179723.1 257784506 8413564 781610..782944 1 NC_013203.1 TIGRFAM: gid protein; PFAM: glucose-inhibited division protein A; KEGG: bcy:Bcer98_2484 tRNA (uracil-5-)- methyltransferase Gid; hypothetical protein 782944 8413564 Apar_0703 Atopobium parvulum DSM 20469 hypothetical protein YP_003179723.1 781610 D 521095 CDS YP_003179724.1 257784507 8413565 782946..783863 1 NC_013203.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pen:PSEEN4254 site-specific tyrosine recombinase XerD; integrase family protein 783863 8413565 Apar_0704 Atopobium parvulum DSM 20469 integrase family protein YP_003179724.1 782946 D 521095 CDS YP_003179725.1 257784508 8413566 784125..784877 1 NC_013203.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: bcb:BCB4264_A3925 ribosomal protein S2; 30S ribosomal protein S2 784877 8413566 Apar_0705 Atopobium parvulum DSM 20469 30S ribosomal protein S2 YP_003179725.1 784125 D 521095 CDS YP_003179726.1 257784509 8413567 784931..785803 1 NC_013203.1 TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: glo:Glov_2709 translation elongation factor Ts; translation elongation factor Ts 785803 8413567 Apar_0706 Atopobium parvulum DSM 20469 translation elongation factor Ts YP_003179726.1 784931 D 521095 CDS YP_003179727.1 257784510 8413568 785833..786657 1 NC_013203.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: gur:Gura_3731 uridylate kinase; uridylate kinase 786657 8413568 Apar_0707 Atopobium parvulum DSM 20469 uridylate kinase YP_003179727.1 785833 D 521095 CDS YP_003179728.1 257784511 8413569 786657..787202 1 NC_013203.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: dde:Dde_1128 ribosome recycling factor; ribosome recycling factor 787202 8413569 Apar_0708 Atopobium parvulum DSM 20469 ribosome recycling factor YP_003179728.1 786657 D 521095 CDS YP_003179729.1 257784512 8413570 787203..787982 1 NC_013203.1 KEGG: bha:BH2423 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 787982 8413570 Apar_0709 Atopobium parvulum DSM 20469 undecaprenyl diphosphate synthase YP_003179729.1 787203 D 521095 CDS YP_003179730.1 257784513 8413571 787985..789010 1 NC_013203.1 PFAM: phosphatidate cytidylyltransferase; KEGG: mxa:MXAN_2556 putative phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 789010 8413571 Apar_0710 Atopobium parvulum DSM 20469 phosphatidate cytidylyltransferase YP_003179730.1 787985 D 521095 CDS YP_003179731.1 257784514 8413572 789014..790201 1 NC_013203.1 KEGG: bcb:BCB4264_A3919 1-deoxy-D-xylulose 5- phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 790201 8413572 Apar_0711 Atopobium parvulum DSM 20469 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003179731.1 789014 D 521095 CDS YP_003179732.1 257784515 8413573 790209..791579 1 NC_013203.1 PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: bsu:BSU16560 hypothetical protein; peptidase M50 791579 8413573 Apar_0712 Atopobium parvulum DSM 20469 peptidase M50 YP_003179732.1 790209 D 521095 CDS YP_003179733.1 257784516 8413574 791588..792661 1 NC_013203.1 KEGG: gsu:GSU1459 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 792661 8413574 Apar_0713 Atopobium parvulum DSM 20469 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_003179733.1 791588 D 521095 CDS YP_003179734.1 257784517 8413575 792720..794417 1 NC_013203.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein; KEGG: dde:Dde_2206 prolyl-tRNA synthetase; prolyl-tRNA synthetase 794417 8413575 Apar_0714 Atopobium parvulum DSM 20469 prolyl-tRNA synthetase YP_003179734.1 792720 D 521095 CDS YP_003179735.1 257784518 8413576 complement(794435..795223) 1 NC_013203.1 PFAM: zinc/iron permease; KEGG: dvm:DvMF_1916 zinc/iron permease; zinc/iron permease 795223 8413576 Apar_0715 Atopobium parvulum DSM 20469 zinc/iron permease YP_003179735.1 794435 R 521095 CDS YP_003179736.1 257784519 8413579 795707..796084 1 NC_013203.1 hypothetical protein 796084 8413579 Apar_0716 Atopobium parvulum DSM 20469 hypothetical protein YP_003179736.1 795707 D 521095 CDS YP_003179737.1 257784520 8413580 796152..796559 1 NC_013203.1 hypothetical protein 796559 8413580 Apar_0717 Atopobium parvulum DSM 20469 hypothetical protein YP_003179737.1 796152 D 521095 CDS YP_003179738.1 257784521 8413582 796795..797187 1 NC_013203.1 hypothetical protein 797187 8413582 Apar_0718 Atopobium parvulum DSM 20469 hypothetical protein YP_003179738.1 796795 D 521095 CDS YP_003179739.1 257784522 8413583 797256..799274 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2545 ABC transporter-related protein; ABC transporter-like protein 799274 8413583 Apar_0719 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179739.1 797256 D 521095 CDS YP_003179740.1 257784523 8413584 799379..800059 1 NC_013203.1 PFAM: peptidase M50; KEGG: afr:AFE_1788 membrane-associated zinc metalloprotease, putative; peptidase M50 800059 8413584 Apar_0720 Atopobium parvulum DSM 20469 peptidase M50 YP_003179740.1 799379 D 521095 CDS YP_003179741.1 257784524 8413585 800059..800973 1 NC_013203.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: bcy:Bcer98_2757 segregation and condensation protein A; chromosome segregation and condensation protein ScpA 800973 8413585 Apar_0721 Atopobium parvulum DSM 20469 chromosome segregation and condensation protein ScpA YP_003179741.1 800059 D 521095 CDS YP_003179742.1 257784525 8413586 800992..801669 1 NC_013203.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pca:Pcar_1300 hypothetical protein; chromosome segregation and condensation protein ScpB 801669 8413586 Apar_0722 Atopobium parvulum DSM 20469 chromosome segregation and condensation protein ScpB YP_003179742.1 800992 D 521095 CDS YP_003179743.1 257784526 8413587 801673..802512 1 NC_013203.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: gsu:GSU1403 ribosomal large subunit pseudouridine synthase B; pseudouridine synthase 802512 8413587 Apar_0723 Atopobium parvulum DSM 20469 pseudouridine synthase YP_003179743.1 801673 D 521095 CDS YP_003179744.1 257784527 8413588 802562..803272 1 NC_013203.1 PFAM: Phosphoglycerate mutase; KEGG: bcr:BCAH187_A2175 phosphoglycerate mutase family protein; phosphoglycerate mutase 803272 8413588 Apar_0724 Atopobium parvulum DSM 20469 phosphoglycerate mutase YP_003179744.1 802562 D 521095 CDS YP_003179745.1 257784528 8413589 803272..804816 1 NC_013203.1 KEGG: bca:BCE_1623 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; cytidylate kinase 804816 8413589 Apar_0725 Atopobium parvulum DSM 20469 cytidylate kinase YP_003179745.1 803272 D 521095 CDS YP_003179746.1 257784529 8413590 804820..805674 1 NC_013203.1 KEGG: gsu:GSU2604 penicillin tolerance protein LytB; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 805674 8413590 Apar_0726 Atopobium parvulum DSM 20469 hydroxymethylbutenyl pyrophosphate reductase YP_003179746.1 804820 D 521095 CDS YP_003179747.1 257784530 8413591 805676..807058 1 NC_013203.1 PFAM: protein of unknown function DUF512; KEGG: glo:Glov_0990 protein of unknown function DUF512; hypothetical protein 807058 8413591 Apar_0727 Atopobium parvulum DSM 20469 hypothetical protein YP_003179747.1 805676 D 521095 CDS YP_003179748.1 257784531 8413592 807105..808430 1 NC_013203.1 KEGG: bcy:Bcer98_1227 GTP-binding protein EngA; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; Ras family protein; SMART: AAA ATPase; small GTP-binding protein 808430 8413592 Apar_0728 Atopobium parvulum DSM 20469 small GTP-binding protein YP_003179748.1 807105 D 521095 CDS YP_003179749.1 257784532 8413593 808430..809092 1 NC_013203.1 PFAM: protein of unknown function DUF205; KEGG: aba:Acid345_2138 acyl-phosphate glycerol-3- phosphate acyltransferase; hypothetical protein 809092 8413593 Apar_0729 Atopobium parvulum DSM 20469 hypothetical protein YP_003179749.1 808430 D 521095 CDS YP_003179750.1 257784533 8413594 809095..810105 1 NC_013203.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: bha:BH1640 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 810105 8413594 Apar_0730 Atopobium parvulum DSM 20469 glycerol-3-phosphate dehydrogenase YP_003179750.1 809095 D 521095 CDS YP_003179751.1 257784534 8413595 810115..810789 1 NC_013203.1 KEGG: bcr:BCAH187_A3908 ribulose-phosphate 3- epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 810789 8413595 Apar_0731 Atopobium parvulum DSM 20469 ribulose-phosphate 3-epimerase YP_003179751.1 810115 D 521095 CDS YP_003179752.1 257784535 8413596 810856..812004 1 NC_013203.1 PFAM: aminotransferase class V; KEGG: mgm:Mmc1_3063 aminotransferase, class V; class V aminotransferase 812004 8413596 Apar_0732 Atopobium parvulum DSM 20469 class V aminotransferase YP_003179752.1 810856 D 521095 CDS YP_003179753.1 257784536 8413597 812102..812821 1 NC_013203.1 PFAM: protein of unknown function DUF164; KEGG: sfu:Sfum_1209 protein of unknown function DUF164; hypothetical protein 812821 8413597 Apar_0733 Atopobium parvulum DSM 20469 hypothetical protein YP_003179753.1 812102 D 521095 CDS YP_003179754.1 257784537 8413598 812836..814062 1 NC_013203.1 KEGG: ank:AnaeK_1492 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 814062 8413598 Apar_0734 Atopobium parvulum DSM 20469 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase YP_003179754.1 812836 D 521095 CDS YP_003179755.1 257784538 8413599 814064..814915 1 NC_013203.1 KEGG: bat:BAS4186 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 814915 8413599 Apar_0735 Atopobium parvulum DSM 20469 apurinic endonuclease Apn1 YP_003179755.1 814064 D 521095 CDS YP_003179756.1 257784539 8413600 814915..816807 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A2173 ABC transporter, ATP- binding protein; ABC transporter-like protein 816807 8413600 Apar_0736 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179756.1 814915 D 521095 CDS YP_003179757.1 257784540 8413601 816808..818553 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter; ABC transporter-like protein 818553 8413601 Apar_0737 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179757.1 816808 D 521095 CDS YP_003179758.1 257784541 8413602 818553..820397 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bca:BCE_2475 ABC transporter, ATP- binding/permease protein; ABC transporter-like protein 820397 8413602 Apar_0738 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179758.1 818553 D 521095 CDS YP_003179759.1 257784542 8413604 820680..820991 1 NC_013203.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: hypothetical protein; methylated-DNA--protein-cysteine methyltransferase 820991 8413604 Apar_0739 Atopobium parvulum DSM 20469 methylated-DNA--protein-cysteine methyltransferase YP_003179759.1 820680 D 521095 CDS YP_003179760.1 257784543 8413605 complement(821055..821543) 1 NC_013203.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: ccv:CCV52592_1839 peptide methionine sulfoxide reductase MsrA/MsrB; peptide methionine sulfoxide reductase 821543 8413605 Apar_0740 Atopobium parvulum DSM 20469 peptide methionine sulfoxide reductase YP_003179760.1 821055 R 521095 CDS YP_003179761.1 257784544 8413606 complement(821570..822238) 1 NC_013203.1 PFAM: cyclic nucleotide-binding; KEGG: dds:Ddes_1827 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 822238 8413606 Apar_0741 Atopobium parvulum DSM 20469 Crp/Fnr family transcriptional regulator YP_003179761.1 821570 R 521095 CDS YP_003179762.1 257784545 8413607 822371..823966 1 NC_013203.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 823966 8413607 Apar_0742 Atopobium parvulum DSM 20469 hydroxylamine reductase YP_003179762.1 822371 D 521095 CDS YP_003179763.1 257784546 8413608 824213..825556 1 NC_013203.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: NADH oxidase lateral transfer candidate; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 825556 8413608 Apar_0743 Atopobium parvulum DSM 20469 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003179763.1 824213 D 521095 CDS YP_003179764.1 257784547 8413609 complement(825684..826430) 1 NC_013203.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; putative RNA methylase; KEGG: apa:APP7_0823 hypothetical protein; type 11 methyltransferase 826430 8413609 Apar_0744 Atopobium parvulum DSM 20469 type 11 methyltransferase YP_003179764.1 825684 R 521095 CDS YP_003179765.1 257784548 8413610 826724..828517 1 NC_013203.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 828517 8413610 Apar_0745 Atopobium parvulum DSM 20469 myosin-cross-reactive antigen YP_003179765.1 826724 D 521095 CDS YP_003179766.1 257784549 8413611 828826..829590 1 NC_013203.1 PFAM: Methyltransferase type 11; KEGG: ban:BA2485 hypothetical protein; type 11 methyltransferase 829590 8413611 Apar_0746 Atopobium parvulum DSM 20469 type 11 methyltransferase YP_003179766.1 828826 D 521095 CDS YP_003179767.1 257784550 8413612 complement(829593..830483) 1 NC_013203.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ecl:EcolC_2822 Cof-like hydrolase; HAD-superfamily hydrolase 830483 8413612 Apar_0747 Atopobium parvulum DSM 20469 HAD-superfamily hydrolase YP_003179767.1 829593 R 521095 CDS YP_003179768.1 257784551 8413613 830613..832010 1 NC_013203.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rpt:Rpal_0416 peptidase M20; hypothetical protein 832010 8413613 Apar_0748 Atopobium parvulum DSM 20469 hypothetical protein YP_003179768.1 830613 D 521095 CDS YP_003179769.1 257784552 8413614 832077..832808 1 NC_013203.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dps:DP0426 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 832808 8413614 Apar_0749 Atopobium parvulum DSM 20469 CDP-alcohol phosphatidyltransferase YP_003179769.1 832077 D 521095 CDS YP_003179770.1 257784553 8413615 832821..834044 1 NC_013203.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bcb:BCB4264_A4185 serine-type D-Ala-D-Ala carboxypeptidase DacF; serine-type D-Ala-D-Ala carboxypeptidase 834044 8413615 Apar_0750 Atopobium parvulum DSM 20469 serine-type D-Ala-D-Ala carboxypeptidase YP_003179770.1 832821 D 521095 CDS YP_003179771.1 257784554 8413616 834044..834886 1 NC_013203.1 hypothetical protein 834886 8413616 Apar_0751 Atopobium parvulum DSM 20469 hypothetical protein YP_003179771.1 834044 D 521095 CDS YP_003179772.1 257784555 8413617 834883..835263 1 NC_013203.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: Os07g0516200; hypothetical protein; endoribonuclease L-PSP 835263 8413617 Apar_0752 Atopobium parvulum DSM 20469 endoribonuclease L-PSP YP_003179772.1 834883 D 521095 CDS YP_003179773.1 257784556 8413618 835303..835719 1 NC_013203.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: afw:Anae109_4141 diguanylate cyclase; FHA domain-containing protein 835719 8413618 Apar_0753 Atopobium parvulum DSM 20469 FHA domain-containing protein YP_003179773.1 835303 D 521095 CDS YP_003179774.1 257784557 8413619 835737..836600 1 NC_013203.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: hpj:jhp0399 putative transcriptional regulator; MerR family transcriptional regulator 836600 8413619 Apar_0754 Atopobium parvulum DSM 20469 MerR family transcriptional regulator YP_003179774.1 835737 D 521095 CDS YP_003179775.1 257784558 8413620 836653..837186 1 NC_013203.1 PFAM: phosphoribosyltransferase; KEGG: asa:ASA_2089 adenine phosphoribosyltransferase; Adenine phosphoribosyltransferase 837186 8413620 Apar_0755 Atopobium parvulum DSM 20469 Adenine phosphoribosyltransferase YP_003179775.1 836653 D 521095 CDS YP_003179776.1 257784559 8413621 837579..838775 1 NC_013203.1 PFAM: NLP/P60 protein; KEGG: bsu:BSU34800 hypothetical protein; NLP/P60 protein 838775 8413621 Apar_0756 Atopobium parvulum DSM 20469 NLP/P60 protein YP_003179776.1 837579 D 521095 CDS YP_003179777.1 257784560 8413622 838905..840491 1 NC_013203.1 PFAM: Chloride channel core; TrkA-C domain protein; KEGG: vsp:VS_II0566 chloride channel protein EriC; chloride channel protein 840491 8413622 Apar_0757 Atopobium parvulum DSM 20469 chloride channel protein YP_003179777.1 838905 D 521095 CDS YP_003179778.1 257784561 8413623 841136..841897 1 NC_013203.1 PFAM: Methyltransferase type 11; KEGG: bcr:BCAH187_A3106 methyltransferase domain family; type 11 methyltransferase 841897 8413623 Apar_0758 Atopobium parvulum DSM 20469 type 11 methyltransferase YP_003179778.1 841136 D 521095 CDS YP_003179779.1 257784562 8413624 841945..842517 1 NC_013203.1 PFAM: protein of unknown function UPF0157; KEGG: ppd:Ppro_1483 hypothetical protein; hypothetical protein 842517 8413624 Apar_0759 Atopobium parvulum DSM 20469 hypothetical protein YP_003179779.1 841945 D 521095 CDS YP_003179780.1 257784563 8413625 842560..842943 1 NC_013203.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: msu:MS0597 GloA protein; Glyoxalase/bleomycin resistance protein/dioxygenase 842943 8413625 Apar_0760 Atopobium parvulum DSM 20469 Glyoxalase/bleomycin resistance protein/dioxygenase YP_003179780.1 842560 D 521095 CDS YP_003179781.1 257784564 8413626 842973..843569 1 NC_013203.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tgr:Tgr7_2811 methyltransferase type 11; type 11 methyltransferase 843569 8413626 Apar_0761 Atopobium parvulum DSM 20469 type 11 methyltransferase YP_003179781.1 842973 D 521095 CDS YP_003179782.1 257784565 8413627 843647..844489 1 NC_013203.1 KEGG: bca:BCE_2437 O-methyltransferase domain- containing protein; O-methyltransferase domain-containing protein 844489 8413627 Apar_0762 Atopobium parvulum DSM 20469 O-methyltransferase domain-containing protein YP_003179782.1 843647 D 521095 CDS YP_003179783.1 257784566 8413628 844525..845052 1 NC_013203.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH0503 hypothetical protein; N-acetyltransferase GCN5 845052 8413628 Apar_0763 Atopobium parvulum DSM 20469 N-acetyltransferase GCN5 YP_003179783.1 844525 D 521095 CDS YP_003179784.1 257784567 8413629 845142..845810 1 NC_013203.1 KEGG: ccv:CCV52592_1508 hypothetical protein; hypothetical protein 845810 8413629 Apar_0764 Atopobium parvulum DSM 20469 hypothetical protein YP_003179784.1 845142 D 521095 CDS YP_003179785.1 257784568 8413630 complement(845915..846865) 1 NC_013203.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_3838 thioredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 846865 8413630 Apar_0765 Atopobium parvulum DSM 20469 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003179785.1 845915 R 521095 CDS YP_003179786.1 257784569 8413631 complement(847029..848345) 1 NC_013203.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: dvl:Dvul_1118 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 848345 8413631 Apar_0766 Atopobium parvulum DSM 20469 xanthine/uracil/vitamin C permease YP_003179786.1 847029 R 521095 CDS YP_003179787.1 257784570 8413632 complement(848415..848864) 1 NC_013203.1 KEGG: nar:Saro_0590 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 848864 8413632 Apar_0767 Atopobium parvulum DSM 20469 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_003179787.1 848415 R 521095 CDS YP_003179788.1 257784571 8413633 complement(848864..849310) 1 NC_013203.1 PFAM: ATP-cone domain protein; KEGG: aba:Acid345_4041 hypothetical protein; ATP-cone domain-containing protein 849310 8413633 Apar_0768 Atopobium parvulum DSM 20469 ATP-cone domain-containing protein YP_003179788.1 848864 R 521095 CDS YP_003179789.1 257784572 8413634 complement(849408..849854) 1 NC_013203.1 PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bsu:BSU09370 gamma-D-glutamate-meso- diaminopimelate muropeptidase (major autolysin) (CWBP49'); peptidoglycan-binding LysM 849854 8413634 Apar_0769 Atopobium parvulum DSM 20469 peptidoglycan-binding LysM YP_003179789.1 849408 R 521095 CDS YP_003179790.1 257784573 8413635 850041..850694 1 NC_013203.1 KEGG: bcb:BCB4264_A3799 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; SOS-response transcriptional repressor, LexA 850694 8413635 Apar_0770 Atopobium parvulum DSM 20469 SOS-response transcriptional repressor, LexA YP_003179790.1 850041 D 521095 CDS YP_003179791.1 257784574 8413636 850702..851466 1 NC_013203.1 PFAM: protein of unknown function DUF1624; KEGG: atc:AGR_C_2846 hypothetical protein; hypothetical protein 851466 8413636 Apar_0771 Atopobium parvulum DSM 20469 hypothetical protein YP_003179791.1 850702 D 521095 CDS YP_003179792.1 257784575 8413637 complement(851437..852750) 1 NC_013203.1 TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: GTP-binding family protein ; K03665 GTP- binding protein HflX; GTP-binding proten HflX 852750 8413637 Apar_0772 Atopobium parvulum DSM 20469 GTP-binding proten HflX YP_003179792.1 851437 R 521095 CDS YP_003179793.1 257784576 8413638 complement(852831..853769) 1 NC_013203.1 KEGG: bcy:Bcer98_2391 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 853769 8413638 Apar_0773 Atopobium parvulum DSM 20469 tRNA delta(2)-isopentenylpyrophosphate transferase YP_003179793.1 852831 R 521095 CDS YP_003179794.1 257784577 8413639 complement(853766..855133) 1 NC_013203.1 KEGG: bat:BAS3621 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 855133 8413639 Apar_0774 Atopobium parvulum DSM 20469 MiaB family RNA modification protein YP_003179794.1 853766 R 521095 CDS YP_003179795.1 257784578 8413640 complement(855136..855459) 1 NC_013203.1 PFAM: Stage V sporulation protein S; KEGG: bha:BH2375 stage V sporulation protein S; Stage V sporulation protein S 855459 8413640 Apar_0775 Atopobium parvulum DSM 20469 Stage V sporulation protein S YP_003179795.1 855136 R 521095 CDS YP_003179796.1 257784579 8413641 complement(855487..856572) 1 NC_013203.1 PFAM: ATP-binding region ATPase domain protein; KEGG: tgr:Tgr7_0895 DNA mismatch repair protein MutL; ATPase domain-containing protein 856572 8413641 Apar_0776 Atopobium parvulum DSM 20469 ATPase domain-containing protein YP_003179796.1 855487 R 521095 CDS YP_003179797.1 257784580 8413642 complement(856576..858129) 1 NC_013203.1 KEGG: bsu:BSU16960 phosphodiesterase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KH type 1 domain protein; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; RNA binding metal dependent phosphohydrolase 858129 8413642 Apar_0777 Atopobium parvulum DSM 20469 RNA binding metal dependent phosphohydrolase YP_003179797.1 856576 R 521095 CDS YP_003179798.1 257784581 8413643 complement(858413..859087) 1 NC_013203.1 PFAM: regulatory protein RecX; KEGG: hch:HCH_02189 hypothetical protein; regulatory protein RecX 859087 8413643 Apar_0778 Atopobium parvulum DSM 20469 regulatory protein RecX YP_003179798.1 858413 R 521095 CDS YP_003179799.1 257784582 8413644 complement(859087..860175) 1 NC_013203.1 KEGG: reh:H16_A0544 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 860175 8413644 Apar_0779 Atopobium parvulum DSM 20469 recA protein YP_003179799.1 859087 R 521095 CDS YP_003179800.1 257784583 8413645 complement(860249..860353) 1 NC_013203.1 hypothetical protein 860353 8413645 Apar_0780 Atopobium parvulum DSM 20469 hypothetical protein YP_003179800.1 860249 R 521095 CDS YP_003179801.1 257784584 8413646 complement(860407..860904) 1 NC_013203.1 PFAM: CinA domain protein; KEGG: gbe:GbCGDNIH1_1192 putative competence-damage protein; CinA domain-containing protein 860904 8413646 Apar_0781 Atopobium parvulum DSM 20469 CinA domain-containing protein YP_003179801.1 860407 R 521095 CDS YP_003179802.1 257784585 8413647 complement(860998..861609) 1 NC_013203.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gme:Gmet_1952 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 861609 8413647 Apar_0782 Atopobium parvulum DSM 20469 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_003179802.1 860998 R 521095 CDS YP_003179803.1 257784586 8413648 complement(861623..863029) 1 NC_013203.1 KEGG: glo:Glov_3199 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG 863029 8413648 Apar_0783 Atopobium parvulum DSM 20469 MiaB-like tRNA modifying protein YliG YP_003179803.1 861623 R 521095 CDS YP_003179804.1 257784587 8413649 complement(862995..863492) 1 NC_013203.1 PFAM: protein of unknown function DUF520; KEGG: sus:Acid_3194 nucleotide-binding protein; hypothetical protein 863492 8413649 Apar_0784 Atopobium parvulum DSM 20469 hypothetical protein YP_003179804.1 862995 R 521095 CDS YP_003179805.1 257784588 8413650 complement(863540..865045) 1 NC_013203.1 SMART: helix-turn-helix domain protein; KEGG: hypothetical protein LOC752473; XRE family transcriptional regulator 865045 8413650 Apar_0785 Atopobium parvulum DSM 20469 XRE family transcriptional regulator YP_003179805.1 863540 R 521095 CDS YP_003179806.1 257784589 8413651 complement(865048..867540) 1 NC_013203.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcy:Bcer98_2445 cell divisionFtsK/SpoIIIE; cell division protein FtsK 867540 8413651 Apar_0786 Atopobium parvulum DSM 20469 cell division protein FtsK YP_003179806.1 865048 R 521095 CDS YP_003179807.1 257784590 8413652 complement(867546..869210) 1 NC_013203.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: bha:BH2398 hypothetical protein; beta-lactamase domain-containing protein 869210 8413652 Apar_0787 Atopobium parvulum DSM 20469 beta-lactamase domain-containing protein YP_003179807.1 867546 R 521095 CDS YP_003179808.1 257784591 8413653 complement(869462..871660) 1 NC_013203.1 KEGG: bcy:Bcer98_2459 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA- binding, bacterial/organelle-type; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; Polyribonucleotide nucleotidyltransferase 871660 8413653 Apar_0788 Atopobium parvulum DSM 20469 Polyribonucleotide nucleotidyltransferase YP_003179808.1 869462 R 521095 CDS YP_003179809.1 257784592 8413654 complement(871745..872023) 1 NC_013203.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: mag:amb4116 ribosomal protein S15P/S13E; 30S ribosomal protein S15 872023 8413654 Apar_0789 Atopobium parvulum DSM 20469 30S ribosomal protein S15 YP_003179809.1 871745 R 521095 CDS YP_003179810.1 257784593 8413655 complement(872159..872908) 1 NC_013203.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: DNA repair protein RecO ; K03584 DNA repair protein RecO (recombination protein O); DNA repair protein RecO 872908 8413655 Apar_0790 Atopobium parvulum DSM 20469 DNA repair protein RecO YP_003179810.1 872159 R 521095 CDS YP_003179811.1 257784594 8413656 complement(872911..873849) 1 NC_013203.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: bcr:BCAH187_A4433 GTP-binding protein Era; GTP-binding protein Era 873849 8413656 Apar_0791 Atopobium parvulum DSM 20469 GTP-binding protein Era YP_003179811.1 872911 R 521095 CDS YP_003179812.1 257784595 8413657 complement(873862..874239) 1 NC_013203.1 PFAM: diacylglycerol kinase; KEGG: pin:Ping_1713 diacylglycerol kinase; diacylglycerol kinase 874239 8413657 Apar_0792 Atopobium parvulum DSM 20469 diacylglycerol kinase YP_003179812.1 873862 R 521095 CDS YP_003179813.1 257784596 8413658 complement(874239..874748) 1 NC_013203.1 PFAM: protein of unknown function UPF0054; KEGG: ftm:FTM_0691 hypothetical protein; hypothetical protein 874748 8413658 Apar_0793 Atopobium parvulum DSM 20469 hypothetical protein YP_003179813.1 874239 R 521095 CDS YP_003179814.1 257784597 8413659 complement(874750..875709) 1 NC_013203.1 PFAM: PhoH family protein; KEGG: bha:BH1361 phosphate starvation-induced protein; PhoH family protein 875709 8413659 Apar_0794 Atopobium parvulum DSM 20469 PhoH family protein YP_003179814.1 874750 R 521095 CDS YP_003179815.1 257784598 8413660 complement(875721..876992) 1 NC_013203.1 KEGG: gbm:Gbem_1643 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 876992 8413660 Apar_0795 Atopobium parvulum DSM 20469 MiaB family RNA modification protein YP_003179815.1 875721 R 521095 CDS YP_003179816.1 257784599 8413661 complement(876992..878185) 1 NC_013203.1 KEGG: bha:BH1348 heat-shock protein (activation of DnaK); TIGRFAM: chaperone protein DnaJ; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ 878185 8413661 Apar_0796 Atopobium parvulum DSM 20469 chaperone protein DnaJ YP_003179816.1 876992 R 521095 CDS YP_003179817.1 257784600 8413662 complement(878219..879328) 1 NC_013203.1 PFAM: heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: spe:Spro_0693 chaperone protein DnaJ; heat shock protein DnaJ domain-containing protein 879328 8413662 Apar_0797 Atopobium parvulum DSM 20469 heat shock protein DnaJ domain-containing protein YP_003179817.1 878219 R 521095 CDS YP_003179818.1 257784601 8413663 complement(879520..880137) 1 NC_013203.1 KEGG: vei:Veis_2445 hypothetical protein; hypothetical protein 880137 8413663 Apar_0798 Atopobium parvulum DSM 20469 hypothetical protein YP_003179818.1 879520 R 521095 CDS YP_003179819.1 257784602 8413664 complement(880218..881465) 1 NC_013203.1 KEGG: ppd:Ppro_1304 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 881465 8413664 Apar_0799 Atopobium parvulum DSM 20469 oxygen-independent coproporphyrinogen III oxidase YP_003179819.1 880218 R 521095 CDS YP_003179820.1 257784603 8413665 complement(881475..882566) 1 NC_013203.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: gbm:Gbem_2807 TIM-barrel protein, nifR3 family; nifR3 family TIM-barrel protein 882566 8413665 Apar_0800 Atopobium parvulum DSM 20469 nifR3 family TIM-barrel protein YP_003179820.1 881475 R 521095 CDS YP_003179821.1 257784604 8413666 complement(882576..884432) 1 NC_013203.1 TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; KEGG: bcy:Bcer98_3046 GTP-binding protein LepA; GTP-binding protein LepA 884432 8413666 Apar_0801 Atopobium parvulum DSM 20469 GTP-binding protein LepA YP_003179821.1 882576 R 521095 CDS YP_003179822.1 257784605 8413667 884496..884759 1 NC_013203.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: pha:PSHAa0914 30S ribosomal subunit protein S20; 30S ribosomal protein S20 884759 8413667 Apar_0802 Atopobium parvulum DSM 20469 30S ribosomal protein S20 YP_003179822.1 884496 D 521095 CDS YP_003179823.1 257784606 8413668 complement(884831..885802) 1 NC_013203.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: gbm:Gbem_0755 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 885802 8413668 Apar_0803 Atopobium parvulum DSM 20469 DNA polymerase III subunit delta YP_003179823.1 884831 R 521095 CDS YP_003179824.1 257784607 8413669 complement(885786..888173) 1 NC_013203.1 TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: bcb:BCB4264_A4445 DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-like protein 888173 8413669 Apar_0804 Atopobium parvulum DSM 20469 ComEC/Rec2-like protein YP_003179824.1 885786 R 521095 CDS YP_003179825.1 257784608 8413670 complement(888166..888918) 1 NC_013203.1 TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein; competence protein ComEA 888918 8413670 Apar_0805 Atopobium parvulum DSM 20469 competence protein ComEA YP_003179825.1 888166 R 521095 CDS YP_003179826.1 257784609 8413671 complement(889185..890429) 1 NC_013203.1 TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; THUMP domain protein; ExsB family protein; KEGG: bca:BCE_4784 thiamine biosynthesis protein ThiI; thiamine biosynthesis/tRNA modification protein ThiI 890429 8413671 Apar_0806 Atopobium parvulum DSM 20469 thiamine biosynthesis/tRNA modification protein ThiI YP_003179826.1 889185 R 521095 CDS YP_003179827.1 257784610 8413672 complement(890435..890719) 1 NC_013203.1 hypothetical protein 890719 8413672 Apar_0807 Atopobium parvulum DSM 20469 hypothetical protein YP_003179827.1 890435 R 521095 CDS YP_003179828.1 257784611 8413673 complement(890719..891297) 1 NC_013203.1 KEGG: sfu:Sfum_3630 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 891297 8413673 Apar_0808 Atopobium parvulum DSM 20469 guanylate kinase YP_003179828.1 890719 R 521095 CDS YP_003179829.1 257784612 8413674 complement(891297..891605) 1 NC_013203.1 hypothetical protein 891605 8413674 Apar_0809 Atopobium parvulum DSM 20469 hypothetical protein YP_003179829.1 891297 R 521095 CDS YP_003179830.1 257784613 8413675 complement(891769..892500) 1 NC_013203.1 KEGG: hha:Hhal_0559 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 892500 8413675 Apar_0810 Atopobium parvulum DSM 20469 orotidine 5'-phosphate decarboxylase YP_003179830.1 891769 R 521095 CDS YP_003179831.1 257784614 8413676 complement(892494..893420) 1 NC_013203.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: bsu:BSU15540 dihydroorotate dehydrogenase 1B; dihydroorotate dehydrogenase family protein 893420 8413676 Apar_0811 Atopobium parvulum DSM 20469 dihydroorotate dehydrogenase family protein YP_003179831.1 892494 R 521095 CDS YP_003179832.1 257784615 8413677 complement(893414..894208) 1 NC_013203.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dal:Dalk_1941 oxidoreductase FAD/NAD(P)- binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein 894208 8413677 Apar_0812 Atopobium parvulum DSM 20469 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_003179832.1 893414 R 521095 CDS YP_003179833.1 257784616 8413678 complement(894208..895515) 1 NC_013203.1 KEGG: gur:Gura_1857 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type 895515 8413678 Apar_0813 Atopobium parvulum DSM 20469 dihydroorotase, multifunctional complex type YP_003179833.1 894208 R 521095 CDS YP_003179834.1 257784617 8413679 complement(895499..896434) 1 NC_013203.1 TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: pca:Pcar_1615 aspartate carbamoyltransferase; aspartate carbamoyltransferase 896434 8413679 Apar_0814 Atopobium parvulum DSM 20469 aspartate carbamoyltransferase YP_003179834.1 895499 R 521095 CDS YP_003179835.1 257784618 8413680 complement(896434..897009) 1 NC_013203.1 PFAM: phosphoribosyltransferase; KEGG: bha:BH2541 pyrimidine regulatory protein PyrR; uracil phosphoribosyltransferase 897009 8413680 Apar_0815 Atopobium parvulum DSM 20469 uracil phosphoribosyltransferase YP_003179835.1 896434 R 521095 CDS YP_003179836.1 257784619 8413681 complement(897163..897927) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: apl:APL_1464 ABC transporter integral membrane subunit; ABC transporter-like protein 897927 8413681 Apar_0816 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179836.1 897163 R 521095 CDS YP_003179837.1 257784620 8413682 complement(898343..899371) 1 NC_013203.1 KEGG: scl:sce3081 lactose operon repressor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator 899371 8413682 Apar_0817 Atopobium parvulum DSM 20469 LacI family transcriptional regulator YP_003179837.1 898343 R 521095 CDS YP_003179838.1 257784621 8413683 899639..900697 1 NC_013203.1 PFAM: Aldose 1-epimerase; KEGG: predicted protein ; K01785 aldose 1-epimerase; aldose 1-epimerase 900697 8413683 Apar_0818 Atopobium parvulum DSM 20469 aldose 1-epimerase YP_003179838.1 899639 D 521095 CDS YP_003179839.1 257784622 8413684 900739..901950 1 NC_013203.1 PFAM: GHMP kinase; KEGG: dde:Dde_3653 galactokinase; galactokinase 901950 8413684 Apar_0819 Atopobium parvulum DSM 20469 galactokinase YP_003179839.1 900739 D 521095 CDS YP_003179840.1 257784623 8413685 901941..903560 1 NC_013203.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 903560 8413685 Apar_0820 Atopobium parvulum DSM 20469 galactose-1-phosphate uridylyltransferase YP_003179840.1 901941 D 521095 CDS YP_003179841.1 257784624 8413686 complement(904154..905809) 1 NC_013203.1 PFAM: inner-membrane translocator; KEGG: apj:APJL_1450 beta-methylgalactoside transporter inner membrane component; monosaccharide-transporting ATPase 905809 8413686 Apar_0821 Atopobium parvulum DSM 20469 monosaccharide-transporting ATPase YP_003179841.1 904154 R 521095 CDS YP_003179842.1 257784625 8413687 complement(905825..907333) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hap:HAPS_0443 galactose ABC transporter transporter ATP-binding protein; ABC transporter-like protein 907333 8413687 Apar_0822 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179842.1 905825 R 521095 CDS YP_003179843.1 257784626 8413688 complement(907438..908739) 1 NC_013203.1 KEGG: asa:ASA_0214 ABC-type galactose transporter, periplasmic binding protein; sugar ABC transporter periplasmic protein 908739 8413688 Apar_0823 Atopobium parvulum DSM 20469 sugar ABC transporter periplasmic protein YP_003179843.1 907438 R 521095 CDS YP_003179844.1 257784627 8413690 complement(909231..910598) 1 NC_013203.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: bcr:BCAH187_A4426 RNA polymerase sigma-43 factor; RpoD subfamily RNA polymerase sigma-70 subunit 910598 8413690 Apar_0824 Atopobium parvulum DSM 20469 RpoD subfamily RNA polymerase sigma-70 subunit YP_003179844.1 909231 R 521095 CDS YP_003179845.1 257784628 8413691 complement(910719..912686) 1 NC_013203.1 KEGG: pca:Pcar_2679 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; DNA primase 912686 8413691 Apar_0825 Atopobium parvulum DSM 20469 DNA primase YP_003179845.1 910719 R 521095 CDS YP_003179846.1 257784629 8413692 complement(912676..913713) 1 NC_013203.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: rso:RSc2457 bifunctional riboflavin kinase/FMN adenylyltransferase; riboflavin biosynthesis protein RibF 913713 8413692 Apar_0826 Atopobium parvulum DSM 20469 riboflavin biosynthesis protein RibF YP_003179846.1 912676 R 521095 CDS YP_003179847.1 257784630 8413693 complement(913723..914664) 1 NC_013203.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: pca:Pcar_1559 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 914664 8413693 Apar_0827 Atopobium parvulum DSM 20469 tRNA pseudouridine synthase B YP_003179847.1 913723 R 521095 CDS YP_003179848.1 257784631 8413694 complement(914665..915684) 1 NC_013203.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pca:Pcar_1558 exopolyphosphatase related protein; phosphoesterase RecJ domain-containing protein 915684 8413694 Apar_0828 Atopobium parvulum DSM 20469 phosphoesterase RecJ domain-containing protein YP_003179848.1 914665 R 521095 CDS YP_003179849.1 257784632 8413695 complement(915689..916099) 1 NC_013203.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: aha:AHA_3302 ribosome-binding factor A; ribosome-binding factor A 916099 8413695 Apar_0829 Atopobium parvulum DSM 20469 ribosome-binding factor A YP_003179849.1 915689 R 521095 CDS YP_003179850.1 257784633 8413696 complement(916111..918750) 1 NC_013203.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; GTP-binding protein HSR1-related; KEGG: gme:Gmet_1586 translation initiation factor IF-2; translation initiation factor IF-2 918750 8413696 Apar_0830 Atopobium parvulum DSM 20469 translation initiation factor IF-2 YP_003179850.1 916111 R 521095 CDS YP_003179851.1 257784634 8413697 complement(918794..920035) 1 NC_013203.1 KEGG: bha:BH2416 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; SMART: KH domain protein; NusA antitermination factor 920035 8413697 Apar_0831 Atopobium parvulum DSM 20469 NusA antitermination factor YP_003179851.1 918794 R 521095 CDS YP_003179852.1 257784635 8413698 complement(920052..920546) 1 NC_013203.1 PFAM: protein of unknown function DUF150; KEGG: aeh:Mlg_1950 hypothetical protein; hypothetical protein 920546 8413698 Apar_0832 Atopobium parvulum DSM 20469 hypothetical protein YP_003179852.1 920052 R 521095 CDS YP_003179853.1 257784636 8413699 complement(920671..923244) 1 NC_013203.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: gme:Gmet_2300 leucyl-tRNA synthetase; leucyl-tRNA synthetase 923244 8413699 Apar_0833 Atopobium parvulum DSM 20469 leucyl-tRNA synthetase YP_003179853.1 920671 R 521095 CDS YP_003179854.1 257784637 8413700 complement(923320..924843) 1 NC_013203.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 924843 8413700 Apar_0834 Atopobium parvulum DSM 20469 inosine 5-monophosphate dehydrogenase YP_003179854.1 923320 R 521095 CDS YP_003179855.1 257784638 8413701 complement(924919..926226) 1 NC_013203.1 PFAM: glycosyl transferase family 2; KEGG: bcy:Bcer98_1099 glycosyl transferase family protein; glycosyl transferase family protein 926226 8413701 Apar_0835 Atopobium parvulum DSM 20469 glycosyl transferase family protein YP_003179855.1 924919 R 521095 CDS YP_003179856.1 257784639 8413702 complement(926352..927950) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mgm:Mmc1_0732 ABC transporter related; ABC transporter-like protein 927950 8413702 Apar_0836 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179856.1 926352 R 521095 CDS YP_003179857.1 257784640 8413703 complement(927970..929553) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_40240 putative ATP-binding/permease fusion ABC transporter; ABC transporter-like protein 929553 8413703 Apar_0837 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179857.1 927970 R 521095 CDS YP_003179858.1 257784641 8413704 929724..930545 1 NC_013203.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0793 two-component sensor response regulator; AraC family transcriptional regulator 930545 8413704 Apar_0838 Atopobium parvulum DSM 20469 AraC family transcriptional regulator YP_003179858.1 929724 D 521095 CDS YP_003179859.1 257784642 8413705 complement(930551..931561) 1 NC_013203.1 KEGG: bsu:BSU15460 hypothetical protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RluA family pseudouridine synthase 931561 8413705 Apar_0839 Atopobium parvulum DSM 20469 RluA family pseudouridine synthase YP_003179859.1 930551 R 521095 CDS YP_003179860.1 257784643 8413706 complement(931554..932072) 1 NC_013203.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: btr:Btr_0010 hypothetical protein; lipoprotein signal peptidase 932072 8413706 Apar_0840 Atopobium parvulum DSM 20469 lipoprotein signal peptidase YP_003179860.1 931554 R 521095 CDS YP_003179861.1 257784644 8413707 complement(932073..934871) 1 NC_013203.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: dde:Dde_2142 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 934871 8413707 Apar_0841 Atopobium parvulum DSM 20469 isoleucyl-tRNA synthetase YP_003179861.1 932073 R 521095 CDS YP_003179862.1 257784645 8413708 935340..937274 1 NC_013203.1 KEGG: pca:Pcar_0997 ATP-dependent zinc protease/cell division protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 937274 8413708 Apar_0842 Atopobium parvulum DSM 20469 ATP-dependent metalloprotease FtsH YP_003179862.1 935340 D 521095 CDS YP_003179863.1 257784646 8413709 complement(937360..938202) 1 NC_013203.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mlo:mlr2808 hypothetical protein; tRNA/rRNA methyltransferase SpoU 938202 8413709 Apar_0843 Atopobium parvulum DSM 20469 tRNA/rRNA methyltransferase SpoU YP_003179863.1 937360 R 521095 CDS YP_003179864.1 257784647 8413710 complement(938199..938627) 1 NC_013203.1 KEGG: bar:GBAA1022 DNA-binding protein; TIGRFAM: transcriptional regulator, AbrB family; PFAM: helix-turn-helix domain protein; SpoVT/AbrB domain protein; SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 938627 8413710 Apar_0844 Atopobium parvulum DSM 20469 XRE family transcriptional regulator YP_003179864.1 938199 R 521095 CDS YP_003179865.1 257784648 8413711 complement(938624..939700) 1 NC_013203.1 KEGG: bja:blr4337 hypothetical protein; hypothetical protein 939700 8413711 Apar_0845 Atopobium parvulum DSM 20469 hypothetical protein YP_003179865.1 938624 R 521095 CDS YP_003179866.1 257784649 8413712 940301..941980 1 NC_013203.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bcr:BCAH187_A3259 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 941980 8413712 Apar_0846 Atopobium parvulum DSM 20469 ErfK/YbiS/YcfS/YnhG family protein YP_003179866.1 940301 D 521095 CDS YP_003179867.1 257784650 8413713 complement(942048..942701) 1 NC_013203.1 hypothetical protein 942701 8413713 Apar_0847 Atopobium parvulum DSM 20469 hypothetical protein YP_003179867.1 942048 R 521095 CDS YP_003179868.1 257784651 8413714 complement(942765..943145) 1 NC_013203.1 KEGG: hso:HS_0795 hypothetical protein; hypothetical protein 943145 8413714 Apar_0848 Atopobium parvulum DSM 20469 hypothetical protein YP_003179868.1 942765 R 521095 CDS YP_003179869.1 257784652 8413715 complement(943255..944634) 1 NC_013203.1 KEGG: bha:BH2484 signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 944634 8413715 Apar_0849 Atopobium parvulum DSM 20469 signal recognition particle protein YP_003179869.1 943255 R 521095 CDS YP_003179870.1 257784653 8413716 complement(944634..945539) 1 NC_013203.1 KEGG: tgr:Tgr7_2988 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 945539 8413716 Apar_0850 Atopobium parvulum DSM 20469 signal recognition particle-docking protein FtsY YP_003179870.1 944634 R 521095 CDS YP_003179871.1 257784654 8413717 complement(945539..949078) 1 NC_013203.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: bha:BH2487 chromosome segregation SMC protein; chromosome segregation protein SMC 949078 8413717 Apar_0851 Atopobium parvulum DSM 20469 chromosome segregation protein SMC YP_003179871.1 945539 R 521095 CDS YP_003179872.1 257784655 8413718 complement(949096..949827) 1 NC_013203.1 KEGG: glo:Glov_1945 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III 949827 8413718 Apar_0852 Atopobium parvulum DSM 20469 ribonuclease III YP_003179872.1 949096 R 521095 CDS YP_003179873.1 257784656 8413719 complement(949841..950077) 1 NC_013203.1 PFAM: phosphopantetheine-binding; KEGG: bsu:BSU15920 acyl carrier protein; phosphopantetheine-binding protein 950077 8413719 Apar_0853 Atopobium parvulum DSM 20469 phosphopantetheine-binding protein YP_003179873.1 949841 R 521095 CDS YP_003179874.1 257784657 8413720 complement(950231..951214) 1 NC_013203.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: bcb:BCB4264_A3952 fatty acid/phospholipid synthesis protein PlsX; fatty acid/phospholipid synthesis protein PlsX 951214 8413720 Apar_0854 Atopobium parvulum DSM 20469 fatty acid/phospholipid synthesis protein PlsX YP_003179874.1 950231 R 521095 CDS YP_003179875.1 257784658 8413721 complement(951291..951470) 1 NC_013203.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; 50S ribosomal protein L32 951470 8413721 Apar_0855 Atopobium parvulum DSM 20469 50S ribosomal protein L32 YP_003179875.1 951291 R 521095 CDS YP_003179876.1 257784659 8413722 complement(951618..952187) 1 NC_013203.1 PFAM: protein of unknown function DUF177; KEGG: dde:Dde_2426 hypothetical protein; hypothetical protein 952187 8413722 Apar_0856 Atopobium parvulum DSM 20469 hypothetical protein YP_003179876.1 951618 R 521095 CDS YP_003179877.1 257784660 8413723 complement(952193..952690) 1 NC_013203.1 KEGG: hypothetical protein; hypothetical protein 952690 8413723 Apar_0857 Atopobium parvulum DSM 20469 hypothetical protein YP_003179877.1 952193 R 521095 CDS YP_003179878.1 257784661 8413724 complement(952817..953329) 1 NC_013203.1 KEGG: tgr:Tgr7_0298 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 953329 8413724 Apar_0858 Atopobium parvulum DSM 20469 pantetheine-phosphate adenylyltransferase YP_003179878.1 952817 R 521095 CDS YP_003179879.1 257784662 8413725 complement(953335..953913) 1 NC_013203.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: pzu:PHZ_c3166 N6-adenine-specific methylase; methyltransferase 953913 8413725 Apar_0859 Atopobium parvulum DSM 20469 methyltransferase YP_003179879.1 953335 R 521095 CDS YP_003179880.1 257784663 8413726 complement(953964..956156) 1 NC_013203.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase ; helicase domain protein; KEGG: ret:RHE_CH02093 ATP-dependent DNA helicase protein; helicase domain-containing protein 956156 8413726 Apar_0860 Atopobium parvulum DSM 20469 helicase domain-containing protein YP_003179880.1 953964 R 521095 CDS YP_003179881.1 257784664 8413727 complement(956160..957824) 1 NC_013203.1 PFAM: Dak phosphatase; KEGG: bha:BH2498 hypothetical protein; Dak phosphatase 957824 8413727 Apar_0861 Atopobium parvulum DSM 20469 Dak phosphatase YP_003179881.1 956160 R 521095 CDS YP_003179882.1 257784665 8413728 complement(957863..958210) 1 NC_013203.1 PFAM: protein of unknown function DUF322; KEGG: bsu:BSU15830 hypothetical protein; hypothetical protein 958210 8413728 Apar_0862 Atopobium parvulum DSM 20469 hypothetical protein YP_003179882.1 957863 R 521095 CDS YP_003179883.1 257784666 8413729 958494..958682 1 NC_013203.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dal:Dalk_2403 ribosomal protein L28; 50S ribosomal protein L28 958682 8413729 Apar_0863 Atopobium parvulum DSM 20469 50S ribosomal protein L28 YP_003179883.1 958494 D 521095 CDS YP_003179884.1 257784667 8413730 complement(958827..960191) 1 NC_013203.1 TIGRFAM: thiamine pyrophosphokinase; HAD- superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; Thiamin pyrophosphokinase catalytic region; KEGG: psb:Psyr_5006 HAD family hydrolase; thiamine pyrophosphokinase 960191 8413730 Apar_0864 Atopobium parvulum DSM 20469 thiamine pyrophosphokinase YP_003179884.1 958827 R 521095 CDS YP_003179885.1 257784668 8413731 960291..960476 1 NC_013203.1 TIGRFAM: regulatory protein, FmdB family; KEGG: lip:LI0996 hypothetical protein; FmdB family regulatory protein 960476 8413731 Apar_0865 Atopobium parvulum DSM 20469 FmdB family regulatory protein YP_003179885.1 960291 D 521095 CDS YP_003179886.1 257784669 8413732 complement(960553..961944) 1 NC_013203.1 PFAM: NusB/RsmB/TIM44; Fmu (Sun) domain protein; KEGG: aba:Acid345_4229 sun protein; NusB/RsmB/TIM44 961944 8413732 Apar_0866 Atopobium parvulum DSM 20469 NusB/RsmB/TIM44 YP_003179886.1 960553 R 521095 CDS YP_003179887.1 257784670 8413733 complement(961947..962867) 1 NC_013203.1 KEGG: mca:MCA2844 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase 962867 8413733 Apar_0867 Atopobium parvulum DSM 20469 methionyl-tRNA formyltransferase YP_003179887.1 961947 R 521095 CDS YP_003179888.1 257784671 8413734 complement(962876..963418) 1 NC_013203.1 KEGG: hiq:CGSHiGG_06235 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 963418 8413734 Apar_0868 Atopobium parvulum DSM 20469 peptide deformylase YP_003179888.1 962876 R 521095 CDS YP_003179889.1 257784672 8413735 complement(963427..965739) 1 NC_013203.1 KEGG: bsu:BSU15710 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; PhnA protein ; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; primosomal protein N' 965739 8413735 Apar_0869 Atopobium parvulum DSM 20469 primosomal protein N' YP_003179889.1 963427 R 521095 CDS YP_003179890.1 257784673 8413736 complement(965753..969250) 1 NC_013203.1 PFAM: UvrD/REP helicase; KEGG: bcr:BCAH187_A1297 ATP-dependent nuclease, subunit A; UvrD/REP helicase 969250 8413736 Apar_0870 Atopobium parvulum DSM 20469 UvrD/REP helicase YP_003179890.1 965753 R 521095 CDS YP_003179891.1 257784674 8413737 complement(969257..972385) 1 NC_013203.1 KEGG: sus:Acid_0029 ATP-dependent nuclease subunit B-like protein; hypothetical protein 972385 8413737 Apar_0871 Atopobium parvulum DSM 20469 hypothetical protein YP_003179891.1 969257 R 521095 CDS YP_003179892.1 257784675 8413738 972492..973331 1 NC_013203.1 PFAM: protein of unknown function DUF328; KEGG: cjd:JJD26997_0804 hypothetical protein; hypothetical protein 973331 8413738 Apar_0872 Atopobium parvulum DSM 20469 hypothetical protein YP_003179892.1 972492 D 521095 CDS YP_003179893.1 257784676 8413739 complement(973351..974481) 1 NC_013203.1 PFAM: acyltransferase 3; KEGG: ban:BA5704 hypothetical protein; acyltransferase 3 974481 8413739 Apar_0873 Atopobium parvulum DSM 20469 acyltransferase 3 YP_003179893.1 973351 R 521095 CDS YP_003179894.1 257784677 8413740 974554..975780 1 NC_013203.1 hypothetical protein 975780 8413740 Apar_0874 Atopobium parvulum DSM 20469 hypothetical protein YP_003179894.1 974554 D 521095 CDS YP_003179895.1 257784678 8413741 complement(975749..976126) 1 NC_013203.1 PFAM: membrane protein of unknown function; KEGG: gur:Gura_2280 membrane protein of unknown function; hypothetical protein 976126 8413741 Apar_0875 Atopobium parvulum DSM 20469 hypothetical protein YP_003179895.1 975749 R 521095 CDS YP_003179896.1 257784679 8413742 complement(976195..976467) 1 NC_013203.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: vsa:VSAL_II0090 PTS system, fructose-specific IIA/FPR component; phosphotransferase system, phosphocarrier protein HPr 976467 8413742 Apar_0876 Atopobium parvulum DSM 20469 phosphotransferase system, phosphocarrier protein HPr YP_003179896.1 976195 R 521095 CDS YP_003179897.1 257784680 8413743 976651..977961 1 NC_013203.1 KEGG: viral A-type inclusion protein; hypothetical protein 977961 8413743 Apar_0877 Atopobium parvulum DSM 20469 hypothetical protein YP_003179897.1 976651 D 521095 CDS YP_003179898.1 257784681 8413744 complement(978070..979233) 1 NC_013203.1 TIGRFAM:S-adenosylmethionine/tRNA- ribosyltransferase -isomerase; PFAM: Queuosine biosynthesis protein; KEGG: bcb:BCB4264_A4537 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 979233 8413744 Apar_0878 Atopobium parvulum DSM 20469 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_003179898.1 978070 R 521095 CDS YP_003179899.1 257784682 8413745 complement(979223..979843) 1 NC_013203.1 PFAM: protein of unknown function DUF208; KEGG: ppd:Ppro_1651 hypothetical protein; hypothetical protein 979843 8413745 Apar_0879 Atopobium parvulum DSM 20469 hypothetical protein YP_003179899.1 979223 R 521095 CDS YP_003179900.1 257784683 8413746 complement(979855..980721) 1 NC_013203.1 PFAM: Abortive infection protein; KEGG: bcy:Bcer98_1778 abortive infection protein; abortive infection protein 980721 8413746 Apar_0880 Atopobium parvulum DSM 20469 abortive infection protein YP_003179900.1 979855 R 521095 CDS YP_003179901.1 257784684 8413747 980849..982888 1 NC_013203.1 PFAM: tRNA synthetase class I (M); KEGG: scl:sce8081 hypothetical protein; Methionine--tRNA ligase 982888 8413747 Apar_0881 Atopobium parvulum DSM 20469 Methionine--tRNA ligase YP_003179901.1 980849 D 521095 CDS YP_003179902.1 257784685 8413748 982910..983806 1 NC_013203.1 PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_6102 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 983806 8413748 Apar_0882 Atopobium parvulum DSM 20469 alpha/beta hydrolase fold protein YP_003179902.1 982910 D 521095 CDS YP_003179903.1 257784686 8413749 983950..984414 1 NC_013203.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dvm:DvMF_2265 transcriptional regulator, MarR family; MarR family transcriptional regulator 984414 8413749 Apar_0883 Atopobium parvulum DSM 20469 MarR family transcriptional regulator YP_003179903.1 983950 D 521095 CDS YP_003179904.1 257784687 8413750 984399..986300 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ban:BA2443 ABC transporter, ATP- binding/permease protein; ABC transporter-like protein 986300 8413750 Apar_0884 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179904.1 984399 D 521095 CDS YP_003179905.1 257784688 8413751 986293..988209 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bcr:BCAH187_A2539 ABC transporter, permease/ATP-binding protein; ABC transporter-like protein 988209 8413751 Apar_0885 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179905.1 986293 D 521095 CDS YP_003179906.1 257784689 8413752 complement(988284..988994) 1 NC_013203.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gph1; phosphoglycolate phosphatase protein ; K01091 phosphoglycolate phosphatase; haloacid dehalogenase domain-containing protein hydrolase 988994 8413752 Apar_0886 Atopobium parvulum DSM 20469 haloacid dehalogenase domain-containing protein hydrolase YP_003179906.1 988284 R 521095 CDS YP_003179907.1 257784690 8413753 989169..991436 1 NC_013203.1 KEGG: TPR Domain containing protein; hypothetical protein 991436 8413753 Apar_0887 Atopobium parvulum DSM 20469 hypothetical protein YP_003179907.1 989169 D 521095 CDS YP_003179908.1 257784691 8413754 complement(991538..994210) 1 NC_013203.1 PFAM: cell wall hydrolase/autolysin; putative cell wall binding repeat-containing protein; KEGG: hypothetical protein; cell wall hydrolase/autolysin 994210 8413754 Apar_0888 Atopobium parvulum DSM 20469 cell wall hydrolase/autolysin YP_003179908.1 991538 R 521095 CDS YP_003179909.1 257784692 8413755 994325..994987 1 NC_013203.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase-like hydrolase family protein; HAD-superfamily hydrolase 994987 8413755 Apar_0889 Atopobium parvulum DSM 20469 HAD-superfamily hydrolase YP_003179909.1 994325 D 521095 CDS YP_003179910.1 257784693 8413756 complement(995076..995279) 1 NC_013203.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bha:BH3610 cold-shock protein; cold-shock DNA-binding domain-containing protein 995279 8413756 Apar_0890 Atopobium parvulum DSM 20469 cold-shock DNA-binding domain-containing protein YP_003179910.1 995076 R 521095 CDS YP_003179911.1 257784694 8413757 995616..997904 1 NC_013203.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; putative cell wall binding repeat-containing protein; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease; ErfK/YbiS/YcfS/YnhG family protein 997904 8413757 Apar_0891 Atopobium parvulum DSM 20469 ErfK/YbiS/YcfS/YnhG family protein YP_003179911.1 995616 D 521095 CDS YP_003179912.1 257784695 8413758 complement(997986..998381) 1 NC_013203.1 hypothetical protein 998381 8413758 Apar_0892 Atopobium parvulum DSM 20469 hypothetical protein YP_003179912.1 997986 R 521095 CDS YP_003179913.1 257784696 8413759 complement(998396..999463) 1 NC_013203.1 KEGG: ppd:Ppro_2321 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Holliday junction DNA helicase RuvB 999463 8413759 Apar_0893 Atopobium parvulum DSM 20469 Holliday junction DNA helicase RuvB YP_003179913.1 998396 R 521095 CDS YP_003179914.1 257784697 8413760 complement(999463..1000095) 1 NC_013203.1 KEGG: ppg:PputGB1_4202 Holliday junction DNA helicase motor protein; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA 1000095 8413760 Apar_0894 Atopobium parvulum DSM 20469 Holliday junction DNA helicase RuvA YP_003179914.1 999463 R 521095 CDS YP_003179915.1 257784698 8413761 complement(1000092..1000595) 1 NC_013203.1 KEGG: mgm:Mmc1_0478 Holliday junction endonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 1000595 8413761 Apar_0895 Atopobium parvulum DSM 20469 crossover junction endodeoxyribonuclease RuvC YP_003179915.1 1000092 R 521095 CDS YP_003179916.1 257784699 8413762 complement(1000657..1002444) 1 NC_013203.1 KEGG: afr:AFE_0428 glutamine-dependent NAD+ synthetase; amidohydrolase 1002444 8413762 Apar_0896 Atopobium parvulum DSM 20469 amidohydrolase YP_003179916.1 1000657 R 521095 CDS YP_003179917.1 257784700 8413763 complement(1002575..1002940) 1 NC_013203.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: glo:Glov_2591 desulfoferrodoxin; Desulfoferrodoxin ferrous iron-binding subunit 1002940 8413763 Apar_0897 Atopobium parvulum DSM 20469 Desulfoferrodoxin ferrous iron-binding subunit YP_003179917.1 1002575 R 521095 CDS YP_003179918.1 257784701 8413764 complement(1003050..1006886) 1 NC_013203.1 KEGG: dps:DP1663 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1006886 8413764 Apar_0898 Atopobium parvulum DSM 20469 DNA polymerase III subunit alpha YP_003179918.1 1003050 R 521095 CDS YP_003179919.1 257784702 8413765 1007215..1008573 1 NC_013203.1 PFAM: peptidase C1B bleomycin hydrolase; KEGG: BLMH; bleomycin hydrolase; K01372 bleomycin hydrolase; Bleomycin hydrolase 1008573 8413765 Apar_0899 Atopobium parvulum DSM 20469 Bleomycin hydrolase YP_003179919.1 1007215 D 521095 CDS YP_003179920.1 257784703 8413766 1008648..1010117 1 NC_013203.1 PFAM: peptidase C1B bleomycin hydrolase; KEGG: YALI0F17974p ; K01372 bleomycin hydrolase; Bleomycin hydrolase 1010117 8413766 Apar_0900 Atopobium parvulum DSM 20469 Bleomycin hydrolase YP_003179920.1 1008648 D 521095 CDS YP_003179921.1 257784704 8413767 1010352..1010996 1 NC_013203.1 hypothetical protein 1010996 8413767 Apar_0901 Atopobium parvulum DSM 20469 hypothetical protein YP_003179921.1 1010352 D 521095 CDS YP_003179922.1 257784705 8413768 1010993..1011172 1 NC_013203.1 hypothetical protein 1011172 8413768 Apar_0902 Atopobium parvulum DSM 20469 hypothetical protein YP_003179922.1 1010993 D 521095 CDS YP_003179923.1 257784706 8413769 complement(1011232..1011873) 1 NC_013203.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: bsu:BSU35510 hypothetical protein; hypothetical protein 1011873 8413769 Apar_0903 Atopobium parvulum DSM 20469 hypothetical protein YP_003179923.1 1011232 R 521095 CDS YP_003179924.1 257784707 8413770 complement(1011895..1012425) 1 NC_013203.1 TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: bcz:BCZK0859 PTS system, beta-glucoside- specific enzyme II, ABC component; PTS system glucose subfamily transporter subunit IIA 1012425 8413770 Apar_0904 Atopobium parvulum DSM 20469 PTS system glucose subfamily transporter subunit IIA YP_003179924.1 1011895 R 521095 CDS YP_003179925.1 257784708 8413772 complement(1013067..1013876) 1 NC_013203.1 PFAM: Methyltransferase type 12; KEGG: GK17905 gene product from transcript GK17905- RA; type 12 methyltransferase 1013876 8413772 Apar_0905 Atopobium parvulum DSM 20469 type 12 methyltransferase YP_003179925.1 1013067 R 521095 CDS YP_003179926.1 257784709 8413773 1013945..1015798 1 NC_013203.1 KEGG: histone acethyltransferase-like protein; PFAM: Radical SAM domain protein; GCN5-related N- acetyltransferase; SMART: Elongator protein 3/MiaB/NifB; Histone acetyltransferase 1015798 8413773 Apar_0906 Atopobium parvulum DSM 20469 Histone acetyltransferase YP_003179926.1 1013945 D 521095 CDS YP_003179927.1 257784710 8413774 complement(1015936..1017579) 1 NC_013203.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; tryptophan halogenase; FAD dependent oxidoreductase; KEGG: ppr:PBPRB1551 putative thioredoxin reductase; thioredoxin-disulfide reductase 1017579 8413774 Apar_0907 Atopobium parvulum DSM 20469 thioredoxin-disulfide reductase YP_003179927.1 1015936 R 521095 CDS YP_003179928.1 257784711 8413775 complement(1017596..1018159) 1 NC_013203.1 KEGG: bpy:Bphyt_5403 peroxiredoxin; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; peroxiredoxin 1018159 8413775 Apar_0908 Atopobium parvulum DSM 20469 peroxiredoxin YP_003179928.1 1017596 R 521095 CDS YP_003179929.1 257784712 8413777 1018664..1019224 1 NC_013203.1 hypothetical protein 1019224 8413777 Apar_0909 Atopobium parvulum DSM 20469 hypothetical protein YP_003179929.1 1018664 D 521095 CDS YP_003179930.1 257784713 8413778 complement(1019219..1019422) 1 NC_013203.1 hypothetical protein 1019422 8413778 Apar_0910 Atopobium parvulum DSM 20469 hypothetical protein YP_003179930.1 1019219 R 521095 CDS YP_003179931.1 257784714 8413779 complement(1019509..1020807) 1 NC_013203.1 PFAM: conserved hypothetical protein; KEGG: ilo:IL0119 hypothetical protein; hypothetical protein 1020807 8413779 Apar_0911 Atopobium parvulum DSM 20469 hypothetical protein YP_003179931.1 1019509 R 521095 CDS YP_003179932.1 257784715 8413780 complement(1020915..1022000) 1 NC_013203.1 KEGG: sdn:Sden_1828 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase 1022000 8413780 Apar_0912 Atopobium parvulum DSM 20469 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase YP_003179932.1 1020915 R 521095 CDS YP_003179933.1 257784716 8413781 complement(1021988..1023193) 1 NC_013203.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afe:Lferr_0188 aminotransferase class V; class V aminotransferase 1023193 8413781 Apar_0913 Atopobium parvulum DSM 20469 class V aminotransferase YP_003179933.1 1021988 R 521095 CDS YP_003179934.1 257784717 8413782 complement(1023286..1024224) 1 NC_013203.1 PFAM: protein of unknown function DUF1113; KEGG: glo:Glov_2883 metal dependent phosphohydrolase; hypothetical protein 1024224 8413782 Apar_0914 Atopobium parvulum DSM 20469 hypothetical protein YP_003179934.1 1023286 R 521095 CDS YP_003179935.1 257784718 8413785 complement(1024869..1025600) 1 NC_013203.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; ATP-binding region ATPase domain protein; KEGG: ppr:PBPRA0351 anti-anti-sigma regulatory factor; anti-sigma-factor antagonist 1025600 8413785 Apar_0915 Atopobium parvulum DSM 20469 anti-sigma-factor antagonist YP_003179935.1 1024869 R 521095 CDS YP_003179936.1 257784719 8413786 complement(1025666..1028011) 1 NC_013203.1 PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; KEGG: gme:Gmet_2062 serine phosphatase; putative PAS/PAC sensor protein 1028011 8413786 Apar_0916 Atopobium parvulum DSM 20469 putative PAS/PAC sensor protein YP_003179936.1 1025666 R 521095 CDS YP_003179937.1 257784720 8413788 complement(1028299..1030077) 1 NC_013203.1 PFAM: extracellular solute-binding protein family 5; KEGG: mes:Meso_1835 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 1030077 8413788 Apar_0917 Atopobium parvulum DSM 20469 family 5 extracellular solute-binding protein YP_003179937.1 1028299 R 521095 CDS YP_003179938.1 257784721 8413789 complement(1030237..1032270) 1 NC_013203.1 KEGG: oca:OCAR_7522 glutathione import ATP-binding protein GsiA; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1032270 8413789 Apar_0918 Atopobium parvulum DSM 20469 oligopeptide/dipeptide ABC transporter ATPase YP_003179938.1 1030237 R 521095 CDS YP_003179939.1 257784722 8413790 complement(1032270..1033340) 1 NC_013203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1833 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1033340 8413790 Apar_0919 Atopobium parvulum DSM 20469 binding-protein-dependent transport system inner membrane protein YP_003179939.1 1032270 R 521095 CDS YP_003179940.1 257784723 8413791 complement(1033351..1034343) 1 NC_013203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1834 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1034343 8413791 Apar_0920 Atopobium parvulum DSM 20469 binding-protein-dependent transport system inner membrane protein YP_003179940.1 1033351 R 521095 CDS YP_003179941.1 257784724 8413792 complement(1034768..1035019) 1 NC_013203.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: vsa:VSAL_I0595 protein-export membrane protein SecG (preprotein translocase band subunit); preprotein translocase subunit SecG 1035019 8413792 Apar_0921 Atopobium parvulum DSM 20469 preprotein translocase subunit SecG YP_003179941.1 1034768 R 521095 CDS YP_003179942.1 257784725 8413793 complement(1035193..1035960) 1 NC_013203.1 KEGG: ank:AnaeK_2335 triose-phosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 1035960 8413793 Apar_0922 Atopobium parvulum DSM 20469 triosephosphate isomerase YP_003179942.1 1035193 R 521095 CDS YP_003179943.1 257784726 8413794 complement(1035953..1037143) 1 NC_013203.1 PFAM: phosphoglycerate kinase; KEGG: bsu:BSU33930 phosphoglycerate kinase; phosphoglycerate kinase 1037143 8413794 Apar_0923 Atopobium parvulum DSM 20469 phosphoglycerate kinase YP_003179943.1 1035953 R 521095 CDS YP_003179944.1 257784727 8413795 complement(1037230..1038255) 1 NC_013203.1 KEGG: ftw:FTW_0523 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1038255 8413795 Apar_0924 Atopobium parvulum DSM 20469 glyceraldehyde-3-phosphate dehydrogenase, type I YP_003179944.1 1037230 R 521095 CDS YP_003179945.1 257784728 8413796 complement(1038348..1039316) 1 NC_013203.1 PFAM: protein of unknown function DUF199; KEGG: bcr:BCAH187_A5314 hypothetical protein; hypothetical protein 1039316 8413796 Apar_0925 Atopobium parvulum DSM 20469 hypothetical protein YP_003179945.1 1038348 R 521095 CDS YP_003179946.1 257784729 8413797 complement(1039330..1040247) 1 NC_013203.1 PFAM: conserved hypothetical protein; KEGG: bcr:BCAH187_A5316 hypothetical protein; hypothetical protein 1040247 8413797 Apar_0926 Atopobium parvulum DSM 20469 hypothetical protein YP_003179946.1 1039330 R 521095 CDS YP_003179947.1 257784730 8413798 complement(1040294..1040983) 1 NC_013203.1 PFAM: putative N-acetylmannosamine-6-phosphate epimerase; KEGG: ent:Ent638_3230 N-acetylmannosamine-6- phosphate 2-epimerase; N-acylglucosamine-6-phosphate 2-epimerase 1040983 8413798 Apar_0927 Atopobium parvulum DSM 20469 N-acylglucosamine-6-phosphate 2-epimerase YP_003179947.1 1040294 R 521095 CDS YP_003179948.1 257784731 8413799 complement(1041080..1042069) 1 NC_013203.1 PFAM: ROK family protein; KEGG: aba:Acid345_0003 glucokinase; ROK family protein 1042069 8413799 Apar_0928 Atopobium parvulum DSM 20469 ROK family protein YP_003179948.1 1041080 R 521095 CDS YP_003179949.1 257784732 8413800 complement(1042085..1043008) 1 NC_013203.1 PFAM: dihydrodipicolinate synthetase; KEGG: rlt:Rleg2_4793 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 1043008 8413800 Apar_0929 Atopobium parvulum DSM 20469 dihydrodipicolinate synthetase YP_003179949.1 1042085 R 521095 CDS YP_003179950.1 257784733 8413801 complement(1043135..1044076) 1 NC_013203.1 PFAM: Acetyl xylan esterase; KEGG: bha:BH3326 acetylxylan esterase (cephalosporin-C deacetylase); Acetyl xylan esterase 1044076 8413801 Apar_0930 Atopobium parvulum DSM 20469 Acetyl xylan esterase YP_003179950.1 1043135 R 521095 CDS YP_003179951.1 257784734 8413802 complement(1044073..1045113) 1 NC_013203.1 PFAM: Acetyl xylan esterase; KEGG: bha:BH3326 acetylxylan esterase (cephalosporin-C deacetylase); Acetyl xylan esterase 1045113 8413802 Apar_0931 Atopobium parvulum DSM 20469 Acetyl xylan esterase YP_003179951.1 1044073 R 521095 CDS YP_003179952.1 257784735 8413803 complement(1045180..1046001) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: apa:APP7_0909 ABC transporter, ATP-binding subunit; ABC transporter-like protein 1046001 8413803 Apar_0932 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179952.1 1045180 R 521095 CDS YP_003179953.1 257784736 8413804 complement(1046002..1048041) 1 NC_013203.1 PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: hap:HAPS_1116 ABC-type oligopeptide transport systems, ATP-binding/permease; ABC transporter-like protein 1048041 8413804 Apar_0933 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179953.1 1046002 R 521095 CDS YP_003179954.1 257784737 8413805 complement(1048046..1049002) 1 NC_013203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hsm:HSM_0787 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1049002 8413805 Apar_0934 Atopobium parvulum DSM 20469 binding-protein-dependent transport system inner membrane protein YP_003179954.1 1048046 R 521095 CDS YP_003179955.1 257784738 8413806 complement(1049159..1050760) 1 NC_013203.1 PFAM: extracellular solute-binding protein family 5; KEGG: hdu:HD1669 putative ABC transporter periplasmic binding protein; family 5 extracellular solute-binding protein 1050760 8413806 Apar_0935 Atopobium parvulum DSM 20469 family 5 extracellular solute-binding protein YP_003179955.1 1049159 R 521095 CDS YP_003179956.1 257784739 8413807 complement(1051181..1051825) 1 NC_013203.1 hypothetical protein 1051825 8413807 Apar_0936 Atopobium parvulum DSM 20469 hypothetical protein YP_003179956.1 1051181 R 521095 CDS YP_003179957.1 257784740 8413808 complement(1052032..1052265) 1 NC_013203.1 hypothetical protein 1052265 8413808 Apar_0937 Atopobium parvulum DSM 20469 hypothetical protein YP_003179957.1 1052032 R 521095 CDS YP_003179958.1 257784741 8413809 complement(1052258..1054192) 1 NC_013203.1 KEGG: dal:Dalk_0774 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; excinuclease ABC subunit C 1054192 8413809 Apar_0938 Atopobium parvulum DSM 20469 excinuclease ABC subunit C YP_003179958.1 1052258 R 521095 CDS YP_003179959.1 257784742 8413810 complement(1054317..1055951) 1 NC_013203.1 PFAM: virulence factor MVIN family protein; KEGG: dol:Dole_2327 integral membrane protein MviN; virulence factor MVIN family protein 1055951 8413810 Apar_0939 Atopobium parvulum DSM 20469 virulence factor MVIN family protein YP_003179959.1 1054317 R 521095 CDS YP_003179960.1 257784743 8413811 complement(1055951..1056460) 1 NC_013203.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sus:Acid_5432 YbaK/EbsC protein; ybaK/ebsC protein 1056460 8413811 Apar_0940 Atopobium parvulum DSM 20469 ybaK/ebsC protein YP_003179960.1 1055951 R 521095 CDS YP_003179961.1 257784744 8413812 complement(1056462..1059356) 1 NC_013203.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bsu:BSU35160 excinuclease ABC subunit A; excinuclease ABC subunit A 1059356 8413812 Apar_0941 Atopobium parvulum DSM 20469 excinuclease ABC subunit A YP_003179961.1 1056462 R 521095 CDS YP_003179962.1 257784745 8413813 complement(1059513..1059974) 1 NC_013203.1 PFAM: conserved hypothetical protein; KEGG: ppr:PBPRA2282 hypothetical protein; hypothetical protein 1059974 8413813 Apar_0942 Atopobium parvulum DSM 20469 hypothetical protein YP_003179962.1 1059513 R 521095 CDS YP_003179963.1 257784746 8413814 1060093..1060941 1 NC_013203.1 KEGG: par:Psyc_1426 ATP-binding protein; ATP-binding protein 1060941 8413814 Apar_0943 Atopobium parvulum DSM 20469 ATP-binding protein YP_003179963.1 1060093 D 521095 CDS YP_003179964.1 257784747 8413815 1060988..1062241 1 NC_013203.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sun:SUN_2357 hypothetical protein; hypothetical protein 1062241 8413815 Apar_0944 Atopobium parvulum DSM 20469 hypothetical protein YP_003179964.1 1060988 D 521095 CDS YP_003179965.1 257784748 8413816 1062243..1063913 1 NC_013203.1 PFAM: FAD dependent oxidoreductase; KEGG: acr:Acry_0945 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1063913 8413816 Apar_0945 Atopobium parvulum DSM 20469 FAD dependent oxidoreductase YP_003179965.1 1062243 D 521095 CDS YP_003179966.1 257784749 8413817 complement(1063910..1066150) 1 NC_013203.1 KEGG: bcy:Bcer98_3710 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase domain protein; excinuclease ABC subunit B 1066150 8413817 Apar_0946 Atopobium parvulum DSM 20469 excinuclease ABC subunit B YP_003179966.1 1063910 R 521095 CDS YP_003179967.1 257784750 8413818 1066327..1068411 1 NC_013203.1 SMART: Tetratricopeptide domain protein; hypothetical protein 1068411 8413818 Apar_0947 Atopobium parvulum DSM 20469 hypothetical protein YP_003179967.1 1066327 D 521095 CDS YP_003179968.1 257784751 8413819 complement(1068435..1069049) 1 NC_013203.1 KEGG: hypothetical protein LOC100024122; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 1069049 8413819 Apar_0948 Atopobium parvulum DSM 20469 dephospho-CoA kinase YP_003179968.1 1068435 R 521095 CDS YP_003179969.1 257784752 8413820 complement(1069061..1069690) 1 NC_013203.1 PFAM: ABC transporter related; KEGG: sil:SPO2689 iron ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 1069690 8413820 Apar_0949 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003179969.1 1069061 R 521095 CDS YP_003179970.1 257784753 8413821 complement(1069687..1070568) 1 NC_013203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nis:NIS_1592 sulfonate/nitrate ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 1070568 8413821 Apar_0950 Atopobium parvulum DSM 20469 binding-protein-dependent transport system inner membrane protein YP_003179970.1 1069687 R 521095 CDS YP_003179971.1 257784754 8413822 complement(1070558..1071574) 1 NC_013203.1 KEGG: tdn:Suden_1346 putative sulfonate/nitrate transport system substrate-binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 1071574 8413822 Apar_0951 Atopobium parvulum DSM 20469 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein YP_003179971.1 1070558 R 521095 CDS YP_003179972.1 257784755 8413823 complement(1071708..1072769) 1 NC_013203.1 PFAM: peptidase M42 family protein; KEGG: bcy:Bcer98_0723 peptidase M42 family protein; peptidase M42 family protein 1072769 8413823 Apar_0952 Atopobium parvulum DSM 20469 peptidase M42 family protein YP_003179972.1 1071708 R 521095 CDS YP_003179973.1 257784756 8413824 complement(1072779..1074029) 1 NC_013203.1 KEGG: vpa:VPA1193 peptidase T; TIGRFAM: peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20; peptidase T 1074029 8413824 Apar_0953 Atopobium parvulum DSM 20469 peptidase T YP_003179973.1 1072779 R 521095 CDS YP_003179974.1 257784757 8413825 complement(1074092..1074886) 1 NC_013203.1 PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: mxa:MXAN_5086 class I glutamine amidotransferase family protein; peptidase C26 1074886 8413825 Apar_0954 Atopobium parvulum DSM 20469 peptidase C26 YP_003179974.1 1074092 R 521095 CDS YP_003179975.1 257784758 8413826 1075121..1076725 1 NC_013203.1 PFAM: extracellular solute-binding protein family 5; KEGG: rsp:RSP_3255 ABC peptide transporter, periplasmic binding protein; 4-phytase 1076725 8413826 Apar_0955 Atopobium parvulum DSM 20469 4-phytase YP_003179975.1 1075121 D 521095 CDS YP_003179976.1 257784759 8413827 complement(1076820..1077932) 1 NC_013203.1 KEGG: bsu:BSU11370 oligopeptide ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1077932 8413827 Apar_0956 Atopobium parvulum DSM 20469 oligopeptide/dipeptide ABC transporter ATPase YP_003179976.1 1076820 R 521095 CDS YP_003179977.1 257784760 8413828 complement(1077935..1079101) 1 NC_013203.1 KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1079101 8413828 Apar_0957 Atopobium parvulum DSM 20469 oligopeptide/dipeptide ABC transporter ATPase YP_003179977.1 1077935 R 521095 CDS YP_003179978.1 257784761 8413829 complement(1079118..1080074) 1 NC_013203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cja:CJA_2055 oligopeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1080074 8413829 Apar_0958 Atopobium parvulum DSM 20469 binding-protein-dependent transport system inner membrane protein YP_003179978.1 1079118 R 521095 CDS YP_003179979.1 257784762 8413830 complement(1080074..1081009) 1 NC_013203.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK4245 oligopeptide ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 1081009 8413830 Apar_0959 Atopobium parvulum DSM 20469 binding-protein-dependent transport system inner membrane protein YP_003179979.1 1080074 R 521095 CDS YP_003179980.1 257784763 8413831 complement(1081093..1082736) 1 NC_013203.1 PFAM: extracellular solute-binding protein family 5; KEGG: sme:SMa0104 ABC transporter, periplasmic solute-binding protein; family 5 extracellular solute-binding protein 1082736 8413831 Apar_0960 Atopobium parvulum DSM 20469 family 5 extracellular solute-binding protein YP_003179980.1 1081093 R 521095 CDS YP_003179981.1 257784764 8413832 complement(1083159..1086218) 1 NC_013203.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein; surface protein from Gram-positive cocci anchor region; KEGG: similar to zymogen granule membrane glycoprotein 2; LPXTG-motif cell wall anchor domain-containing protein 1086218 8413832 Apar_0961 Atopobium parvulum DSM 20469 LPXTG-motif cell wall anchor domain-containing protein YP_003179981.1 1083159 R 521095 CDS YP_003179982.1 257784765 8413833 complement(1086608..1087864) 1 NC_013203.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: bha:BH1636 30S ribosomal protein S1; RNA binding S1 domain-containing protein 1087864 8413833 Apar_0962 Atopobium parvulum DSM 20469 RNA binding S1 domain-containing protein YP_003179982.1 1086608 R 521095 CDS YP_003179983.1 257784766 8413834 complement(1088121..1088513) 1 NC_013203.1 PFAM: Heavy metal transport/detoxification protein; KEGG: bmj:BMULJ_05226 Cu2+-exporting ATPase; heavy metal transport/detoxification protein 1088513 8413834 Apar_0963 Atopobium parvulum DSM 20469 heavy metal transport/detoxification protein YP_003179983.1 1088121 R 521095 CDS YP_003179984.1 257784767 8413835 complement(1088624..1089028) 1 NC_013203.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3667 flavodoxin, short chain; flavodoxin/nitric oxide synthase 1089028 8413835 Apar_0964 Atopobium parvulum DSM 20469 flavodoxin/nitric oxide synthase YP_003179984.1 1088624 R 521095 CDS YP_003179985.1 257784768 8413836 complement(1089113..1089859) 1 NC_013203.1 KEGG: pca:Pcar_0068 hypothetical protein; hypothetical protein 1089859 8413836 Apar_0965 Atopobium parvulum DSM 20469 hypothetical protein YP_003179985.1 1089113 R 521095 CDS YP_003179986.1 257784769 8413837 complement(1090178..1092346) 1 NC_013203.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dvu:DVU3332 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1092346 8413837 Apar_0966 Atopobium parvulum DSM 20469 heavy metal translocating P-type ATPase YP_003179986.1 1090178 R 521095 CDS YP_003179987.1 257784770 8413838 complement(1092350..1092652) 1 NC_013203.1 hypothetical protein 1092652 8413838 Apar_0967 Atopobium parvulum DSM 20469 hypothetical protein YP_003179987.1 1092350 R 521095 CDS YP_003179988.1 257784771 8413839 1093052..1093606 1 NC_013203.1 PFAM: glutathione peroxidase; KEGG: nmn:NMCC_1530 glutathione peroxidase; glutathione peroxidase 1093606 8413839 Apar_0968 Atopobium parvulum DSM 20469 glutathione peroxidase YP_003179988.1 1093052 D 521095 CDS YP_003179989.1 257784772 8413840 1093628..1094143 1 NC_013203.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cps:CPS_3331 MarR family transcriptional regulator; MarR family transcriptional regulator 1094143 8413840 Apar_0969 Atopobium parvulum DSM 20469 MarR family transcriptional regulator YP_003179989.1 1093628 D 521095 CDS YP_003179990.1 257784773 8413841 1094151..1095323 1 NC_013203.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: msu:MS1293 MMT1 protein; cation diffusion facilitator family transporter 1095323 8413841 Apar_0970 Atopobium parvulum DSM 20469 cation diffusion facilitator family transporter YP_003179990.1 1094151 D 521095 CDS YP_003179991.1 257784774 8413842 complement(1095668..1098328) 1 NC_013203.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: ppr:PBPRB1904 ferrous ion transport protein B; ferrous iron transport protein B 1098328 8413842 Apar_0971 Atopobium parvulum DSM 20469 ferrous iron transport protein B YP_003179991.1 1095668 R 521095 CDS YP_003179992.1 257784775 8413843 complement(1098328..1098573) 1 NC_013203.1 PFAM: FeoA family protein; KEGG: ank:AnaeK_3367 FeoA family protein; FeoA family protein 1098573 8413843 Apar_0972 Atopobium parvulum DSM 20469 FeoA family protein YP_003179992.1 1098328 R 521095 CDS YP_003179993.1 257784776 8413844 complement(1098643..1098909) 1 NC_013203.1 PFAM: FeoA family protein; KEGG: dal:Dalk_1640 ferric uptake regulator, Fur family; FeoA family protein 1098909 8413844 Apar_0973 Atopobium parvulum DSM 20469 FeoA family protein YP_003179993.1 1098643 R 521095 CDS YP_003179994.1 257784777 8413845 complement(1099151..1102018) 1 NC_013203.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: gme:Gmet_0304 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 1102018 8413845 Apar_0974 Atopobium parvulum DSM 20469 phosphoenolpyruvate carboxylase YP_003179994.1 1099151 R 521095 CDS YP_003179995.1 257784778 8413846 1102329..1103633 1 NC_013203.1 PFAM: polysaccharide biosynthesis protein; KEGG: sus:Acid_4856 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1103633 8413846 Apar_0975 Atopobium parvulum DSM 20469 polysaccharide biosynthesis protein YP_003179995.1 1102329 D 521095 CDS YP_003179996.1 257784779 8413847 complement(1103747..1104064) 1 NC_013203.1 PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: csa:Csal_3222 glutaredoxin; glutaredoxin 1104064 8413847 Apar_0976 Atopobium parvulum DSM 20469 glutaredoxin YP_003179996.1 1103747 R 521095 CDS YP_003179997.1 257784780 8413849 complement(1104358..1105548) 1 NC_013203.1 PFAM: protein of unknown function DUF523; purine or other phosphorylase family 1; KEGG: bsu:BSU23490 purine nucleoside phosphorylase; hypothetical protein 1105548 8413849 Apar_0977 Atopobium parvulum DSM 20469 hypothetical protein YP_003179997.1 1104358 R 521095 CDS YP_003179998.1 257784781 8413850 complement(1105562..1106410) 1 NC_013203.1 hypothetical protein 1106410 8413850 Apar_0978 Atopobium parvulum DSM 20469 hypothetical protein YP_003179998.1 1105562 R 521095 CDS YP_003179999.1 257784782 8413851 complement(1106545..1107231) 1 NC_013203.1 KEGG: scl:sce1707 histone H1 protein; hypothetical protein 1107231 8413851 Apar_0979 Atopobium parvulum DSM 20469 hypothetical protein YP_003179999.1 1106545 R 521095 CDS YP_003180000.1 257784783 8413852 complement(1107260..1108042) 1 NC_013203.1 PFAM: protein of unknown function DUF88; KEGG: nmu:Nmul_A2205 hypothetical protein; hypothetical protein 1108042 8413852 Apar_0980 Atopobium parvulum DSM 20469 hypothetical protein YP_003180000.1 1107260 R 521095 CDS YP_003180001.1 257784784 8413853 complement(1108069..1109133) 1 NC_013203.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; Shikimate/quinate 5-dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; KEGG: bsu:BSU13960 hypothetical protein; 3-hydroxyisobutyrate dehydrogenase 1109133 8413853 Apar_0981 Atopobium parvulum DSM 20469 3-hydroxyisobutyrate dehydrogenase YP_003180001.1 1108069 R 521095 CDS YP_003180002.1 257784785 8413854 complement(1109209..1110237) 1 NC_013203.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bcy:Bcer98_1951 DegV family protein; degV family protein 1110237 8413854 Apar_0982 Atopobium parvulum DSM 20469 degV family protein YP_003180002.1 1109209 R 521095 CDS YP_003180003.1 257784786 8413855 complement(1110227..1110817) 1 NC_013203.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bcb:BCB4264_A5308 ribosomal subunit interface protein; sigma 54 modulation protein/30S ribosomal protein S30EA 1110817 8413855 Apar_0983 Atopobium parvulum DSM 20469 sigma 54 modulation protein/30S ribosomal protein S30EA YP_003180003.1 1110227 R 521095 CDS YP_003180004.1 257784787 8413856 complement(1110955..1111887) 1 NC_013203.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bcn:Bcen_2527 extracellular solute-binding protein; family 3 extracellular solute-binding protein 1111887 8413856 Apar_0984 Atopobium parvulum DSM 20469 family 3 extracellular solute-binding protein YP_003180004.1 1110955 R 521095 CDS YP_003180005.1 257784788 8413857 complement(1112203..1112952) 1 NC_013203.1 KEGG: spe:Spro_4633 gluconate periplasmic binding protein; amidophosphoribosyltransferase-like protein 1112952 8413857 Apar_0985 Atopobium parvulum DSM 20469 amidophosphoribosyltransferase-like protein YP_003180005.1 1112203 R 521095 CDS YP_003180006.1 257784789 8413858 complement(1113046..1113807) 1 NC_013203.1 KEGG: bcy:Bcer98_2113 hypothetical protein; hypothetical protein 1113807 8413858 Apar_0986 Atopobium parvulum DSM 20469 hypothetical protein YP_003180006.1 1113046 R 521095 CDS YP_003180007.1 257784790 8413859 1113901..1114368 1 NC_013203.1 hypothetical protein 1114368 8413859 Apar_0987 Atopobium parvulum DSM 20469 hypothetical protein YP_003180007.1 1113901 D 521095 CDS YP_003180008.1 257784791 8413860 complement(1114391..1115875) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_3323 ABC transporter, ATP-binding protein; ABC transporter-like protein 1115875 8413860 Apar_0988 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003180008.1 1114391 R 521095 CDS YP_003180009.1 257784792 8413861 complement(1115872..1116786) 1 NC_013203.1 KEGG: bcz:BCZK3009 ABC transporter, permease; cobalt transport protein; hypothetical protein 1116786 8413861 Apar_0989 Atopobium parvulum DSM 20469 hypothetical protein YP_003180009.1 1115872 R 521095 CDS YP_003180010.1 257784793 8413862 complement(1116786..1117451) 1 NC_013203.1 KEGG: bcy:Bcer98_2116 hypothetical protein; hypothetical protein 1117451 8413862 Apar_0990 Atopobium parvulum DSM 20469 hypothetical protein YP_003180010.1 1116786 R 521095 CDS YP_003180011.1 257784794 8413863 complement(1117448..1121233) 1 NC_013203.1 SMART: Pyrrolo-quinoline quinone; KEGG: GK12566 gene product from transcript GK12566- RA; Pyrrolo-quinoline quinone 1121233 8413863 Apar_0991 Atopobium parvulum DSM 20469 Pyrrolo-quinoline quinone YP_003180011.1 1117448 R 521095 CDS YP_003180012.1 257784795 8413864 complement(1121238..1122053) 1 NC_013203.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: gme:Gmet_1227 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1122053 8413864 Apar_0992 Atopobium parvulum DSM 20469 prolipoprotein diacylglyceryl transferase YP_003180012.1 1121238 R 521095 CDS YP_003180013.1 257784796 8413865 complement(1122075..1122632) 1 NC_013203.1 TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: ypm:YP_1414 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 1122632 8413865 Apar_0993 Atopobium parvulum DSM 20469 deoxycytidine triphosphate deaminase YP_003180013.1 1122075 R 521095 CDS YP_003180014.1 257784797 8413866 complement(1122862..1123098) 1 NC_013203.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: dal:Dalk_0569 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein 1123098 8413866 Apar_0994 Atopobium parvulum DSM 20469 nitrogen-fixing NifU domain-containing protein YP_003180014.1 1122862 R 521095 CDS YP_003180015.1 257784798 8413867 complement(1123190..1125820) 1 NC_013203.1 PFAM: peptidase U32; KEGG: scl:sce2217 proteinase; peptidase U32 1125820 8413867 Apar_0995 Atopobium parvulum DSM 20469 peptidase U32 YP_003180015.1 1123190 R 521095 CDS YP_003180016.1 257784799 8413868 complement(1125847..1126452) 1 NC_013203.1 KEGG: dal:Dalk_1489 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1126452 8413868 Apar_0996 Atopobium parvulum DSM 20469 dTDP-4-dehydrorhamnose 3,5-epimerase YP_003180016.1 1125847 R 521095 CDS YP_003180017.1 257784800 8413869 1126569..1127249 1 NC_013203.1 PFAM: glycosyl transferase family 2; KEGG: bcy:Bcer98_3944 glycosyl transferase family protein; glycosyl transferase family protein 1127249 8413869 Apar_0997 Atopobium parvulum DSM 20469 glycosyl transferase family protein YP_003180017.1 1126569 D 521095 CDS YP_003180018.1 257784801 8413870 1127259..1127645 1 NC_013203.1 KEGG: ade:Adeh_3052 hypothetical protein; hypothetical protein 1127645 8413870 Apar_0998 Atopobium parvulum DSM 20469 hypothetical protein YP_003180018.1 1127259 D 521095 CDS YP_003180019.1 257784802 8413871 complement(1127704..1128954) 1 NC_013203.1 PFAM: polysaccharide biosynthesis protein; KEGG: bcb:BCB4264_A5393 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1128954 8413871 Apar_0999 Atopobium parvulum DSM 20469 polysaccharide biosynthesis protein YP_003180019.1 1127704 R 521095 CDS YP_003180020.1 257784803 8413872 complement(1128957..1129880) 1 NC_013203.1 PFAM: LicD family protein; KEGG: vpa:VP1322 putative LicD1 protein; LicD family protein 1129880 8413872 Apar_1000 Atopobium parvulum DSM 20469 LicD family protein YP_003180020.1 1128957 R 521095 CDS YP_003180021.1 257784804 8413873 1129956..1130747 1 NC_013203.1 PFAM: glycosyl transferase family 2; KEGG: sse:Ssed_2991 glycosyl transferase family protein; glycosyl transferase family protein 1130747 8413873 Apar_1001 Atopobium parvulum DSM 20469 glycosyl transferase family protein YP_003180021.1 1129956 D 521095 CDS YP_003180022.1 257784805 8413874 complement(1130826..1131773) 1 NC_013203.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pca:Pcar_0941 hypothetical protein; hypothetical protein 1131773 8413874 Apar_1002 Atopobium parvulum DSM 20469 hypothetical protein YP_003180022.1 1130826 R 521095 CDS YP_003180023.1 257784806 8413875 complement(1131792..1133582) 1 NC_013203.1 PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; regulatory protein MarR; KEGG: mlo:mll5367 hypothetical protein; MarR family transcriptional regulator 1133582 8413875 Apar_1003 Atopobium parvulum DSM 20469 MarR family transcriptional regulator YP_003180023.1 1131792 R 521095 CDS YP_003180024.1 257784807 8413876 complement(1133795..1134640) 1 NC_013203.1 PFAM: LicD family protein; KEGG: hiq:CGSHiGG_00265 lic-1 operon protein; LicD family protein 1134640 8413876 Apar_1004 Atopobium parvulum DSM 20469 LicD family protein YP_003180024.1 1133795 R 521095 CDS YP_003180025.1 257784808 8413877 complement(1134640..1135707) 1 NC_013203.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: maq:Maqu_2631 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 1135707 8413877 Apar_1005 Atopobium parvulum DSM 20469 dTDP-glucose 4,6-dehydratase YP_003180025.1 1134640 R 521095 CDS YP_003180026.1 257784809 8413878 complement(1135709..1136608) 1 NC_013203.1 KEGG: dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; NAD- dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase 1136608 8413878 Apar_1006 Atopobium parvulum DSM 20469 dTDP-4-dehydrorhamnose reductase YP_003180026.1 1135709 R 521095 CDS YP_003180027.1 257784810 8413879 complement(1136610..1137512) 1 NC_013203.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pmy:Pmen_4290 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1137512 8413879 Apar_1007 Atopobium parvulum DSM 20469 glucose-1-phosphate thymidylyltransferase YP_003180027.1 1136610 R 521095 CDS YP_003180028.1 257784811 8413880 complement(1137588..1139765) 1 NC_013203.1 hypothetical protein 1139765 8413880 Apar_1008 Atopobium parvulum DSM 20469 hypothetical protein YP_003180028.1 1137588 R 521095 CDS YP_003180029.1 257784812 8413881 complement(1139799..1141010) 1 NC_013203.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein; KEGG: glo:Glov_3502 tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase 1141010 8413881 Apar_1009 Atopobium parvulum DSM 20469 tyrosyl-tRNA synthetase YP_003180029.1 1139799 R 521095 CDS YP_003180030.1 257784813 8413882 1141173..1143305 1 NC_013203.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: sat:SYN_00304 multimodular transpeptidase- transglycosylase; penicillin-binding protein 1143305 8413882 Apar_1010 Atopobium parvulum DSM 20469 penicillin-binding protein YP_003180030.1 1141173 D 521095 CDS YP_003180031.1 257784814 8413883 complement(1143417..1143857) 1 NC_013203.1 PFAM: arginine repressor; KEGG: sus:Acid_2503 ArgR family transcriptional regulator; arginine repressor ArgR 1143857 8413883 Apar_1011 Atopobium parvulum DSM 20469 arginine repressor ArgR YP_003180031.1 1143417 R 521095 CDS YP_003180032.1 257784815 8413884 1144080..1145129 1 NC_013203.1 hypothetical protein 1145129 8413884 Apar_1012 Atopobium parvulum DSM 20469 hypothetical protein YP_003180032.1 1144080 D 521095 CDS YP_003180033.1 257784816 8413885 complement(1145177..1146898) 1 NC_013203.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: bcb:BCB4264_A5051 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 1146898 8413885 Apar_1013 Atopobium parvulum DSM 20469 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_003180033.1 1145177 R 521095 CDS YP_003180034.1 257784817 8413886 1147246..1149528 1 NC_013203.1 PFAM: THUMP domain protein; putative RNA methylase; KEGG: mca:MCA0712 23S rRNA m(2)G2445 methyltransferase; THUMP domain-containing protein 1149528 8413886 Apar_1014 Atopobium parvulum DSM 20469 THUMP domain-containing protein YP_003180034.1 1147246 D 521095 CDS YP_003180035.1 257784818 8413887 1149645..1151927 1 NC_013203.1 PFAM: K potassium transporter; KEGG: lpp:lpp2446 hypothetical protein; K potassium transporter 1151927 8413887 Apar_1015 Atopobium parvulum DSM 20469 K potassium transporter YP_003180035.1 1149645 D 521095 CDS YP_003180036.1 257784819 8413888 complement(1152055..1152957) 1 NC_013203.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: bsu:BSU36290 hypothetical protein; HAD-superfamily hydrolase 1152957 8413888 Apar_1016 Atopobium parvulum DSM 20469 HAD-superfamily hydrolase YP_003180036.1 1152055 R 521095 CDS YP_003180037.1 257784820 8413889 complement(1152970..1153257) 1 NC_013203.1 PFAM: amino acid-binding ACT domain protein; KEGG: ppd:Ppro_0612 hypothetical protein; ACT domain-containing protein 1153257 8413889 Apar_1017 Atopobium parvulum DSM 20469 ACT domain-containing protein YP_003180037.1 1152970 R 521095 CDS YP_003180038.1 257784821 8413890 complement(1153295..1153795) 1 NC_013203.1 hypothetical protein 1153795 8413890 Apar_1018 Atopobium parvulum DSM 20469 hypothetical protein YP_003180038.1 1153295 R 521095 CDS YP_003180039.1 257784822 8413891 complement(1153917..1154639) 1 NC_013203.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: swi:Swit_0024 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1154639 8413891 Apar_1019 Atopobium parvulum DSM 20469 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_003180039.1 1153917 R 521095 CDS YP_003180040.1 257784823 8413892 complement(1154650..1156473) 1 NC_013203.1 KEGG: asu:Asuc_1998 hypothetical protein; hypothetical protein 1156473 8413892 Apar_1020 Atopobium parvulum DSM 20469 hypothetical protein YP_003180040.1 1154650 R 521095 CDS YP_003180041.1 257784824 8413893 1156602..1156871 1 NC_013203.1 hypothetical protein 1156871 8413893 Apar_1021 Atopobium parvulum DSM 20469 hypothetical protein YP_003180041.1 1156602 D 521095 CDS YP_003180042.1 257784825 8413895 complement(1157148..1157375) 1 NC_013203.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bte:BTH_I2731 DNA-binding protein; XRE family transcriptional regulator 1157375 8413895 Apar_1022 Atopobium parvulum DSM 20469 XRE family transcriptional regulator YP_003180042.1 1157148 R 521095 CDS YP_003180043.1 257784826 8413896 complement(1157517..1159499) 1 NC_013203.1 KEGG: rec:RHECIAT_CH0000976 hypothetical protein; hypothetical protein 1159499 8413896 Apar_1023 Atopobium parvulum DSM 20469 hypothetical protein YP_003180043.1 1157517 R 521095 CDS YP_003180044.1 257784827 8413897 complement(1159555..1159827) 1 NC_013203.1 hypothetical protein 1159827 8413897 Apar_1024 Atopobium parvulum DSM 20469 hypothetical protein YP_003180044.1 1159555 R 521095 CDS YP_003180045.1 257784828 8413899 complement(1160203..1160661) 1 NC_013203.1 hypothetical protein 1160661 8413899 Apar_1026 Atopobium parvulum DSM 20469 hypothetical protein YP_003180045.1 1160203 R 521095 CDS YP_003180046.1 257784829 8413900 complement(1160658..1162655) 1 NC_013203.1 hypothetical protein 1162655 8413900 Apar_1027 Atopobium parvulum DSM 20469 hypothetical protein YP_003180046.1 1160658 R 521095 CDS YP_003180047.1 257784830 8413901 complement(1162678..1163154) 1 NC_013203.1 PFAM: TadE family protein; TadE family protein 1163154 8413901 Apar_1028 Atopobium parvulum DSM 20469 TadE family protein YP_003180047.1 1162678 R 521095 CDS YP_003180048.1 257784831 8413902 complement(1163138..1163308) 1 NC_013203.1 hypothetical protein 1163308 8413902 Apar_1029 Atopobium parvulum DSM 20469 hypothetical protein YP_003180048.1 1163138 R 521095 CDS YP_003180049.1 257784832 8413903 complement(1163335..1163799) 1 NC_013203.1 hypothetical protein 1163799 8413903 Apar_1030 Atopobium parvulum DSM 20469 hypothetical protein YP_003180049.1 1163335 R 521095 CDS YP_003180050.1 257784833 8413904 complement(1163796..1163987) 1 NC_013203.1 hypothetical protein 1163987 8413904 Apar_1031 Atopobium parvulum DSM 20469 hypothetical protein YP_003180050.1 1163796 R 521095 CDS YP_003180051.1 257784834 8413905 complement(1163999..1164613) 1 NC_013203.1 PFAM: type II secretion system protein; KEGG: dps:DP1528 hypothetical protein; type II secretion system protein 1164613 8413905 Apar_1032 Atopobium parvulum DSM 20469 type II secretion system protein YP_003180051.1 1163999 R 521095 CDS YP_003180052.1 257784835 8413906 complement(1164610..1165428) 1 NC_013203.1 PFAM: type II secretion system protein; KEGG: mxa:MXAN_4651 type II secretion system protein F domain protein; type II secretion system protein 1165428 8413906 Apar_1033 Atopobium parvulum DSM 20469 type II secretion system protein YP_003180052.1 1164610 R 521095 CDS YP_003180053.1 257784836 8413907 complement(1165500..1166852) 1 NC_013203.1 PFAM: type II secretion system protein E; KEGG: swd:Swoo_0748 FHA domain-containing protein; type II secretion system protein E 1166852 8413907 Apar_1034 Atopobium parvulum DSM 20469 type II secretion system protein E YP_003180053.1 1165500 R 521095 CDS YP_003180054.1 257784837 8413908 complement(1166852..1168150) 1 NC_013203.1 KEGG: ppr:PBPRA0938 putative MinD-related protein; chromosome partitioning ATPase-like protein 1168150 8413908 Apar_1035 Atopobium parvulum DSM 20469 chromosome partitioning ATPase-like protein YP_003180054.1 1166852 R 521095 CDS YP_003180055.1 257784838 8413909 complement(1168150..1168977) 1 NC_013203.1 PFAM: SAF domain protein; KEGG: bvi:Bcep1808_6475 SAF domain-containing protein; SAF domain-containing protein 1168977 8413909 Apar_1036 Atopobium parvulum DSM 20469 SAF domain-containing protein YP_003180055.1 1168150 R 521095 CDS YP_003180056.1 257784839 8413910 complement(1169281..1170465) 1 NC_013203.1 PFAM: GTPase EngC; KEGG: dps:DP1382 hypothetical protein; GTPase EngC 1170465 8413910 Apar_1037 Atopobium parvulum DSM 20469 GTPase EngC YP_003180056.1 1169281 R 521095 CDS YP_003180057.1 257784840 8413911 complement(1170480..1173164) 1 NC_013203.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bcr:BCAH187_A0519 cation-transporting ATPase, E1-E2 family; P-type HAD superfamily ATPase 1173164 8413911 Apar_1038 Atopobium parvulum DSM 20469 P-type HAD superfamily ATPase YP_003180057.1 1170480 R 521095 CDS YP_003180058.1 257784841 8413912 1173418..1174422 1 NC_013203.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vha:VIBHAR_06767 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1174422 8413912 Apar_1039 Atopobium parvulum DSM 20469 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_003180058.1 1173418 D 521095 CDS YP_003180059.1 257784842 8413913 1174502..1175944 1 NC_013203.1 KEGG: bcy:Bcer98_3282 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 1175944 8413913 Apar_1040 Atopobium parvulum DSM 20469 pyruvate kinase YP_003180059.1 1174502 D 521095 CDS YP_003180060.1 257784843 8413914 complement(1176037..1177770) 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rso:RSc1809 ABC transporter ATP-binding protein; ABC transporter-like protein 1177770 8413914 Apar_1041 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003180060.1 1176037 R 521095 CDS YP_003180061.1 257784844 8413915 complement(1177785..1179584) 1 NC_013203.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pde:Pden_1493 ABC transporter related; ABC transporter-like protein 1179584 8413915 Apar_1042 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003180061.1 1177785 R 521095 CDS YP_003180062.1 257784845 8413916 1179914..1180456 1 NC_013203.1 PFAM: ubiquitin-associated- domain-containing protein; KEGG: mmr:Mmar10_1381 elongation factor Ts; ubiquitin-associated- domain-containing protein 1180456 8413916 Apar_1043 Atopobium parvulum DSM 20469 ubiquitin-associated- domain-containing protein YP_003180062.1 1179914 D 521095 CDS YP_003180063.1 257784846 8413917 1180510..1181214 1 NC_013203.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcb:BCB4264_A2673 DNA-binding response regulator; winged helix family two component transcriptional regulator 1181214 8413917 Apar_1044 Atopobium parvulum DSM 20469 winged helix family two component transcriptional regulator YP_003180063.1 1180510 D 521095 CDS YP_003180064.1 257784847 8413918 1181195..1182568 1 NC_013203.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bha:BH0373 two-component sensor histidine kinase; histidine kinase 1182568 8413918 Apar_1045 Atopobium parvulum DSM 20469 histidine kinase YP_003180064.1 1181195 D 521095 CDS YP_003180065.1 257784848 8413919 complement(1182660..1186097) 1 NC_013203.1 KEGG: sfu:Sfum_3452 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 4-alpha-glucanotransferase 1186097 8413919 Apar_1046 Atopobium parvulum DSM 20469 4-alpha-glucanotransferase YP_003180065.1 1182660 R 521095 CDS YP_003180066.1 257784849 8413920 complement(1186100..1187599) 1 NC_013203.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: bat:BAS4758 glycogen synthase; glycogen/starch synthase 1187599 8413920 Apar_1047 Atopobium parvulum DSM 20469 glycogen/starch synthase YP_003180066.1 1186100 R 521095 CDS YP_003180067.1 257784850 8413921 complement(1187602..1188705) 1 NC_013203.1 TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; KEGG: bha:BH1086 required for glycogen biosynthesis; glucose-1-phosphate adenylyltransferase, GlgD subunit 1188705 8413921 Apar_1048 Atopobium parvulum DSM 20469 glucose-1-phosphate adenylyltransferase, GlgD subunit YP_003180067.1 1187602 R 521095 CDS YP_003180068.1 257784851 8413922 complement(1188705..1189853) 1 NC_013203.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: bca:BCE_5027 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 1189853 8413922 Apar_1049 Atopobium parvulum DSM 20469 glucose-1-phosphate adenylyltransferase YP_003180068.1 1188705 R 521095 CDS YP_003180069.1 257784852 8413923 complement(1189929..1192358) 1 NC_013203.1 KEGG: bcb:BCB4264_A4995 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 1192358 8413923 Apar_1050 Atopobium parvulum DSM 20469 glycogen/starch/alpha-glucan phosphorylase YP_003180069.1 1189929 R 521095 CDS YP_003180070.1 257784853 8413924 complement(1192345..1194357) 1 NC_013203.1 KEGG: noc:Noc_0904 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein 1194357 8413924 Apar_1051 Atopobium parvulum DSM 20469 1,4-alpha-glucan branching protein YP_003180070.1 1192345 R 521095 CDS YP_003180071.1 257784854 8413925 complement(1194672..1195898) 1 NC_013203.1 PFAM: iron-containing alcohol dehydrogenase; 3- dehydroquinate synthase; KEGG: shw:Sputw3181_0997 glycerol dehydrogenase; iron-containing alcohol dehydrogenase 1195898 8413925 Apar_1052 Atopobium parvulum DSM 20469 iron-containing alcohol dehydrogenase YP_003180071.1 1194672 R 521095 CDS YP_003180072.1 257784855 8413926 complement(1195950..1196696) 1 NC_013203.1 hypothetical protein 1196696 8413926 Apar_1053 Atopobium parvulum DSM 20469 hypothetical protein YP_003180072.1 1195950 R 521095 CDS YP_003180073.1 257784856 8413927 complement(1196709..1199168) 1 NC_013203.1 KEGG: ppd:Ppro_2303 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 1199168 8413927 Apar_1054 Atopobium parvulum DSM 20469 phenylalanyl-tRNA synthetase subunit beta YP_003180073.1 1196709 R 521095 CDS YP_003180074.1 257784857 8413928 complement(1199199..1200266) 1 NC_013203.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: phenylalanyl-tRNA synthetase, alpha subunit ; K01889 phenylalanyl-tRNA synthetase alpha chain; phenylalanyl-tRNA synthetase subunit alpha 1200266 8413928 Apar_1055 Atopobium parvulum DSM 20469 phenylalanyl-tRNA synthetase subunit alpha YP_003180074.1 1199199 R 521095 CDS YP_003180075.1 257784858 8413929 complement(1200551..1201363) 1 NC_013203.1 PFAM: ABC-3 protein; transport system permease protein; KEGG: bcy:Bcer98_3008 ABC-3 protein; ABC-3 protein 1201363 8413929 Apar_1056 Atopobium parvulum DSM 20469 ABC-3 protein YP_003180075.1 1200551 R 521095 CDS YP_003180076.1 257784859 8413930 complement(1201364..1202218) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00955 ABC-type Mn/Zn transport system ATPase component; ABC transporter-like protein 1202218 8413930 Apar_1057 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003180076.1 1201364 R 521095 CDS YP_003180077.1 257784860 8413931 complement(1202256..1203257) 1 NC_013203.1 PFAM: periplasmic solute binding protein; KEGG: bsu:BSU02850 hypothetical protein; periplasmic solute binding protein 1203257 8413931 Apar_1058 Atopobium parvulum DSM 20469 periplasmic solute binding protein YP_003180077.1 1202256 R 521095 CDS YP_003180078.1 257784861 8413932 complement(1203579..1204226) 1 NC_013203.1 PFAM: protein of unknown function DUF421; KEGG: pmr:PMI0251 hypothetical protein; hypothetical protein 1204226 8413932 Apar_1059 Atopobium parvulum DSM 20469 hypothetical protein YP_003180078.1 1203579 R 521095 CDS YP_003180079.1 257784862 8413933 complement(1204231..1204674) 1 NC_013203.1 hypothetical protein 1204674 8413933 Apar_1060 Atopobium parvulum DSM 20469 hypothetical protein YP_003180079.1 1204231 R 521095 CDS YP_003180080.1 257784863 8413934 complement(1204714..1205880) 1 NC_013203.1 KEGG: bcr:BCAH187_A2109 N-acetylglucosamine-6- phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 1205880 8413934 Apar_1061 Atopobium parvulum DSM 20469 N-acetylglucosamine-6-phosphate deacetylase YP_003180080.1 1204714 R 521095 CDS YP_003180081.1 257784864 8413935 complement(1205938..1207104) 1 NC_013203.1 PFAM: sugar isomerase (SIS); KEGG: bcr:BCAH187_A2108 putative tagatose-6- phosphate ketose/aldose isomerase; sugar isomerase (SIS) 1207104 8413935 Apar_1062 Atopobium parvulum DSM 20469 sugar isomerase (SIS) YP_003180081.1 1205938 R 521095 CDS YP_003180082.1 257784865 8413936 complement(1207127..1207855) 1 NC_013203.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bca:BCE_1903 GntR family transcriptional regulator; GntR family transcriptional regulator 1207855 8413936 Apar_1063 Atopobium parvulum DSM 20469 GntR family transcriptional regulator YP_003180082.1 1207127 R 521095 CDS YP_003180083.1 257784866 8413937 complement(1207910..1208989) 1 NC_013203.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: plu:plu0837 PTS system, N-acetylgalactosamine- specific IID component (EIID-AGA) (N-acetylgalactosamine- permease IID component) (phosphotransferase enzyme II, D component); PTS system mannose/fructose/sorbose family transporter subunit IID 1208989 8413937 Apar_1064 Atopobium parvulum DSM 20469 PTS system mannose/fructose/sorbose family transporter subunit IID YP_003180083.1 1207910 R 521095 CDS YP_003180084.1 257784867 8413938 complement(1208979..1209785) 1 NC_013203.1 PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: vvy:VVA1513 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS sorbose-specific transporter subunit IIC 1209785 8413938 Apar_1065 Atopobium parvulum DSM 20469 PTS sorbose-specific transporter subunit IIC YP_003180084.1 1208979 R 521095 CDS YP_003180085.1 257784868 8413939 complement(1209924..1210406) 1 NC_013203.1 KEGG: plu:plu0835 PTS system, N-acetylgalactosamine- specific IIB component 2 (EIIB-AGA') (N- acetylgalactosamine-permease IIB component 2) (phosphotransferase enzyme II, B component 2); TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component; PTS system mannose/fructose/sorbose family transporter subunit IIB 1210406 8413939 Apar_1066 Atopobium parvulum DSM 20469 PTS system mannose/fructose/sorbose family transporter subunit IIB YP_003180085.1 1209924 R 521095 CDS YP_003180086.1 257784869 8413940 complement(1210502..1210792) 1 NC_013203.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: fph:Fphi_1512 preprotein translocase family protein; preprotein translocase subunit YajC 1210792 8413940 Apar_1067 Atopobium parvulum DSM 20469 preprotein translocase subunit YajC YP_003180086.1 1210502 R 521095 CDS YP_003180087.1 257784870 8413941 complement(1210826..1211266) 1 NC_013203.1 PFAM: PTS system fructose subfamily IIA component; KEGG: vfm:VFMJ11_A1119 PTS system, N- acetylgalactosamine-specific IIA component; PTS system fructose subfamily transporter subunit IIA 1211266 8413941 Apar_1068 Atopobium parvulum DSM 20469 PTS system fructose subfamily transporter subunit IIA YP_003180087.1 1210826 R 521095 CDS YP_003180088.1 257784871 8413942 1211804..1212739 1 NC_013203.1 TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: bca:BCE_1907 tagatose-6-phosphate kinase; 1-phosphofructokinase 1212739 8413942 Apar_1069 Atopobium parvulum DSM 20469 1-phosphofructokinase YP_003180088.1 1211804 D 521095 CDS YP_003180089.1 257784872 8413943 1212876..1213727 1 NC_013203.1 KEGG: spe:Spro_2579 tagatose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; ketose-bisphosphate aldolase 1213727 8413943 Apar_1070 Atopobium parvulum DSM 20469 ketose-bisphosphate aldolase YP_003180089.1 1212876 D 521095 CDS YP_003180090.1 257784873 8413944 complement(1213830..1214876) 1 NC_013203.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1214876 8413944 Apar_1071 Atopobium parvulum DSM 20469 branched-chain amino acid aminotransferase YP_003180090.1 1213830 R 521095 CDS YP_003180091.1 257784874 8413945 1215013..1215372 1 NC_013203.1 PFAM: protein of unknown function DUF488; KEGG: noc:Noc_2090 hypothetical protein; hypothetical protein 1215372 8413945 Apar_1072 Atopobium parvulum DSM 20469 hypothetical protein YP_003180091.1 1215013 D 521095 CDS YP_003180092.1 257784875 8413946 complement(1215391..1216224) 1 NC_013203.1 KEGG: pfl:PFL_5156 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 1216224 8413946 Apar_1073 Atopobium parvulum DSM 20469 glutamate racemase YP_003180092.1 1215391 R 521095 CDS YP_003180093.1 257784876 8413947 1216337..1216765 1 NC_013203.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dps:DP3115 peptidyl-prolyl cis-trans isomerase (FKBP-type); FKBP-type peptidylprolyl isomerase 1216765 8413947 Apar_1074 Atopobium parvulum DSM 20469 FKBP-type peptidylprolyl isomerase YP_003180093.1 1216337 D 521095 CDS YP_003180094.1 257784877 8413948 complement(1216906..1218147) 1 NC_013203.1 KEGG: bha:BH3600 cell wall-binding protein; hypothetical protein 1218147 8413948 Apar_1075 Atopobium parvulum DSM 20469 hypothetical protein YP_003180094.1 1216906 R 521095 CDS YP_003180095.1 257784878 8413949 complement(1218304..1219365) 1 NC_013203.1 hypothetical protein 1219365 8413949 Apar_1076 Atopobium parvulum DSM 20469 hypothetical protein YP_003180095.1 1218304 R 521095 CDS YP_003180096.1 257784879 8413950 complement(1219410..1219973) 1 NC_013203.1 TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: kpn:KPN_02578 beta-glucoside-specific PTS system components IIABC; PTS system glucose subfamily transporter subunit IIA 1219973 8413950 Apar_1077 Atopobium parvulum DSM 20469 PTS system glucose subfamily transporter subunit IIA YP_003180096.1 1219410 R 521095 CDS YP_003180097.1 257784880 8413951 complement(1220111..1222222) 1 NC_013203.1 PFAM: protein of unknown function DUF214; KEGG: bca:BCE_4984 ABC transporter, permease protein; hypothetical protein 1222222 8413951 Apar_1078 Atopobium parvulum DSM 20469 hypothetical protein YP_003180097.1 1220111 R 521095 CDS YP_003180098.1 257784881 8413952 complement(1222212..1223042) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcr:BCAH187_A4972 efflux ABC transporter, ATP- binding protein; ABC transporter-like protein 1223042 8413952 Apar_1079 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003180098.1 1222212 R 521095 CDS YP_003180099.1 257784882 8413953 1223195..1224190 1 NC_013203.1 PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase, GNAT family protein; prolyl aminopeptidase 1224190 8413953 Apar_1080 Atopobium parvulum DSM 20469 prolyl aminopeptidase YP_003180099.1 1223195 D 521095 CDS YP_003180100.1 257784883 8413954 complement(1224200..1225240) 1 NC_013203.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bce:BC2539 two-component sensor kinase YxdK; histidine kinase 1225240 8413954 Apar_1081 Atopobium parvulum DSM 20469 histidine kinase YP_003180100.1 1224200 R 521095 CDS YP_003180101.1 257784884 8413955 complement(1225247..1225918) 1 NC_013203.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH3911 two-component response regulator; winged helix family two component transcriptional regulator 1225918 8413955 Apar_1082 Atopobium parvulum DSM 20469 winged helix family two component transcriptional regulator YP_003180101.1 1225247 R 521095 CDS YP_003180102.1 257784885 8413956 complement(1225940..1226959) 1 NC_013203.1 PFAM: TatD-related deoxyribonuclease; KEGG: hydrolase, TatD family protein ; K03424 Mg- dependent DNase; TatD-related deoxyribonuclease 1226959 8413956 Apar_1083 Atopobium parvulum DSM 20469 TatD-related deoxyribonuclease YP_003180102.1 1225940 R 521095 CDS YP_003180103.1 257784886 8413957 complement(1226952..1227896) 1 NC_013203.1 KEGG: mgm:Mmc1_2325 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase 1227896 8413957 Apar_1084 Atopobium parvulum DSM 20469 dimethyladenosine transferase YP_003180103.1 1226952 R 521095 CDS YP_003180104.1 257784887 8413958 complement(1227899..1229509) 1 NC_013203.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); KEGG: glo:Glov_1949 methionyl-tRNA synthetase; methionyl-tRNA synthetase 1229509 8413958 Apar_1085 Atopobium parvulum DSM 20469 methionyl-tRNA synthetase YP_003180104.1 1227899 R 521095 CDS YP_003180105.1 257784888 8413959 1229659..1229769 1 NC_013203.1 hypothetical protein 1229769 8413959 Apar_1086 Atopobium parvulum DSM 20469 hypothetical protein YP_003180105.1 1229659 D 521095 CDS YP_003180106.1 257784889 8413960 complement(1230325..1231230) 1 NC_013203.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dal:Dalk_4641 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 1231230 8413960 Apar_1087 Atopobium parvulum DSM 20469 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003180106.1 1230325 R 521095 CDS YP_003180107.1 257784890 8413961 complement(1231230..1232270) 1 NC_013203.1 KEGG: tmz:Tmz1t_0862 glucan 1,3-beta-glucosidase; glucan 1,3-beta-glucosidase 1232270 8413961 Apar_1088 Atopobium parvulum DSM 20469 glucan 1,3-beta-glucosidase YP_003180107.1 1231230 R 521095 CDS YP_003180108.1 257784891 8413962 complement(1232363..1232791) 1 NC_013203.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: hap:HAPS_1386 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl-tetrahydropterin synthase 1232791 8413962 Apar_1089 Atopobium parvulum DSM 20469 6-pyruvoyl-tetrahydropterin synthase YP_003180108.1 1232363 R 521095 CDS YP_003180109.1 257784892 8413963 complement(1232791..1234344) 1 NC_013203.1 PFAM: PSP1 domain protein; KEGG: pca:Pcar_1693 PSP-like protein; PSP1 domain-containing protein 1234344 8413963 Apar_1090 Atopobium parvulum DSM 20469 PSP1 domain-containing protein YP_003180109.1 1232791 R 521095 CDS YP_003180110.1 257784893 8413964 complement(1234323..1235492) 1 NC_013203.1 KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase 1235492 8413964 Apar_1091 Atopobium parvulum DSM 20469 DNA-directed DNA polymerase YP_003180110.1 1234323 R 521095 CDS YP_003180111.1 257784894 8413965 complement(1235500..1236159) 1 NC_013203.1 KEGG: gme:Gmet_2318 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 1236159 8413965 Apar_1092 Atopobium parvulum DSM 20469 thymidylate kinase YP_003180111.1 1235500 R 521095 CDS YP_003180112.1 257784895 8413966 complement(1236350..1238863) 1 NC_013203.1 PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; KEGG: DNA topoisomerase III; K03165 DNA topoisomerase III; DNA topoisomerase type IA central domain-containing protein 1238863 8413966 Apar_1093 Atopobium parvulum DSM 20469 DNA topoisomerase type IA central domain-containing protein YP_003180112.1 1236350 R 521095 CDS YP_003180113.1 257784896 8413967 complement(1238898..1239686) 1 NC_013203.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dds:Ddes_1808 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 1239686 8413967 Apar_1094 Atopobium parvulum DSM 20469 Sec-independent protein translocase subunit TatC YP_003180113.1 1238898 R 521095 CDS YP_003180114.1 257784897 8413968 complement(1239705..1240328) 1 NC_013203.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dds:Ddes_1807 twin-arginine translocation protein, TatB subunit; sec-independent translocation protein mttA/Hcf106 1240328 8413968 Apar_1095 Atopobium parvulum DSM 20469 sec-independent translocation protein mttA/Hcf106 YP_003180114.1 1239705 R 521095 CDS YP_003180115.1 257784898 8413969 complement(1240404..1240715) 1 NC_013203.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bha:BH0527 positive regulator of sigma-B activity (anti-anti-sigma factor); anti-sigma-factor antagonist 1240715 8413969 Apar_1096 Atopobium parvulum DSM 20469 anti-sigma-factor antagonist YP_003180115.1 1240404 R 521095 CDS YP_003180116.1 257784899 8413970 complement(1240725..1241501) 1 NC_013203.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_1298 TPR repeat-containing protein; hypothetical protein 1241501 8413970 Apar_1097 Atopobium parvulum DSM 20469 hypothetical protein YP_003180116.1 1240725 R 521095 CDS YP_003180117.1 257784900 8413971 complement(1241590..1242981) 1 NC_013203.1 KEGG: scl:sce6239 hypothetical protein; GntR family transcriptional regulator 1242981 8413971 Apar_1098 Atopobium parvulum DSM 20469 GntR family transcriptional regulator YP_003180117.1 1241590 R 521095 CDS YP_003180118.1 257784901 8413972 1243054..1243323 1 NC_013203.1 hypothetical protein 1243323 8413972 Apar_1099 Atopobium parvulum DSM 20469 hypothetical protein YP_003180118.1 1243054 D 521095 CDS YP_003180119.1 257784902 8413973 1243400..1243684 1 NC_013203.1 hypothetical protein 1243684 8413973 Apar_1100 Atopobium parvulum DSM 20469 hypothetical protein YP_003180119.1 1243400 D 521095 CDS YP_003180120.1 257784903 8413974 complement(1243687..1245063) 1 NC_013203.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; KEGG: hpg:HPG27_1490 Na+/H+ antiporter; Na+/H+ antiporter NhaA 1245063 8413974 Apar_1101 Atopobium parvulum DSM 20469 Na+/H+ antiporter NhaA YP_003180120.1 1243687 R 521095 CDS YP_003180121.1 257784904 8413975 1245269..1246126 1 NC_013203.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bcy:Bcer98_1951 DegV family protein; degV family protein 1246126 8413975 Apar_1102 Atopobium parvulum DSM 20469 degV family protein YP_003180121.1 1245269 D 521095 CDS YP_003180122.1 257784905 8413976 complement(1246233..1246745) 1 NC_013203.1 PFAM: ribonuclease H; KEGG: pat:Patl_2365 ribonuclease H; ribonuclease H 1246745 8413976 Apar_1103 Atopobium parvulum DSM 20469 ribonuclease H YP_003180122.1 1246233 R 521095 CDS YP_003180123.1 257784906 8413977 complement(1246780..1249518) 1 NC_013203.1 KEGG: bsu:BSU29090 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; Helix-hairpin-helix domain protein class 2; DNA polymerase I 1249518 8413977 Apar_1104 Atopobium parvulum DSM 20469 DNA polymerase I YP_003180123.1 1246780 R 521095 CDS YP_003180124.1 257784907 8413978 1249766..1251859 1 NC_013203.1 PFAM: glutamine synthetase catalytic region; KEGG: ppd:Ppro_1682 glutamine synthetase, catalytic region; glutamine synthetase 1251859 8413978 Apar_1105 Atopobium parvulum DSM 20469 glutamine synthetase YP_003180124.1 1249766 D 521095 CDS YP_003180125.1 257784908 8413979 complement(1251982..1253268) 1 NC_013203.1 KEGG: bcr:BCAH187_A5430 putative lipoprotein; hypothetical protein 1253268 8413979 Apar_1106 Atopobium parvulum DSM 20469 hypothetical protein YP_003180125.1 1251982 R 521095 CDS YP_003180126.1 257784909 8413980 complement(1253313..1253891) 1 NC_013203.1 PFAM: protein of unknown function DUF204; KEGG: cha:CHAB381_1654 membrane protein; hypothetical protein 1253891 8413980 Apar_1107 Atopobium parvulum DSM 20469 hypothetical protein YP_003180126.1 1253313 R 521095 CDS YP_003180127.1 257784910 8413981 1253997..1254962 1 NC_013203.1 hypothetical protein 1254962 8413981 Apar_1108 Atopobium parvulum DSM 20469 hypothetical protein YP_003180127.1 1253997 D 521095 CDS YP_003180128.1 257784911 8413982 complement(1255087..1255455) 1 NC_013203.1 PFAM: arsenate reductase and related; KEGG: mxa:MXAN_5496 ArsC family protein; arsenate reductase-like protein 1255455 8413982 Apar_1109 Atopobium parvulum DSM 20469 arsenate reductase-like protein YP_003180128.1 1255087 R 521095 CDS YP_003180129.1 257784912 8413983 complement(1255476..1255658) 1 NC_013203.1 hypothetical protein 1255658 8413983 Apar_1110 Atopobium parvulum DSM 20469 hypothetical protein YP_003180129.1 1255476 R 521095 CDS YP_003180130.1 257784913 8413984 complement(1255728..1257845) 1 NC_013203.1 KEGG: aeh:Mlg_0681 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD- dependent DNA ligase C4-type; NAD-dependent DNA ligase OB- fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase 1257845 8413984 Apar_1111 Atopobium parvulum DSM 20469 NAD-dependent DNA ligase YP_003180130.1 1255728 R 521095 CDS YP_003180131.1 257784914 8413985 complement(1257901..1260945) 1 NC_013203.1 PFAM: glycosyl transferase family 8; glycosyl transferase family 2; KEGG: ecm:EcSMS35_2266 glycosyl transferase family 8; glycosyl transferase family protein 1260945 8413985 Apar_1112 Atopobium parvulum DSM 20469 glycosyl transferase family protein YP_003180131.1 1257901 R 521095 CDS YP_003180132.1 257784915 8413986 complement(1261027..1264359) 1 NC_013203.1 PFAM: protein of unknown function DUF214; KEGG: hha:Hhal_1917 protein of unknown function DUF214; hypothetical protein 1264359 8413986 Apar_1113 Atopobium parvulum DSM 20469 hypothetical protein YP_003180132.1 1261027 R 521095 CDS YP_003180133.1 257784916 8413987 complement(1264362..1265063) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1576 ABC transporter related; ABC transporter-like protein 1265063 8413987 Apar_1114 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003180133.1 1264362 R 521095 CDS YP_003180134.1 257784917 8413988 complement(1265118..1265750) 1 NC_013203.1 KEGG: afr:AFE_2072 hypothetical protein; hypothetical protein 1265750 8413988 Apar_1115 Atopobium parvulum DSM 20469 hypothetical protein YP_003180134.1 1265118 R 521095 CDS YP_003180135.1 257784918 8413989 complement(1265800..1266021) 1 NC_013203.1 hypothetical protein 1266021 8413989 Apar_1116 Atopobium parvulum DSM 20469 hypothetical protein YP_003180135.1 1265800 R 521095 CDS YP_003180136.1 257784919 8413990 complement(1266011..1267354) 1 NC_013203.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: UV damage repair protein, ImpB/MucB/SamB family; UMUC domain-containing protein DNA-repair protein 1267354 8413990 Apar_1117 Atopobium parvulum DSM 20469 UMUC domain-containing protein DNA-repair protein YP_003180136.1 1266011 R 521095 CDS YP_003180137.1 257784920 8413991 complement(1267358..1267930) 1 NC_013203.1 TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: hypothetical protein; DJ-1 family protein 1267930 8413991 Apar_1118 Atopobium parvulum DSM 20469 DJ-1 family protein YP_003180137.1 1267358 R 521095 CDS YP_003180138.1 257784921 8413992 complement(1268083..1268541) 1 NC_013203.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ecl:EcolC_2925 PTS system, fructose subfamily, IIC subunit; putative PTS IIA-like nitrogen-regulatory protein PtsN 1268541 8413992 Apar_1119 Atopobium parvulum DSM 20469 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_003180138.1 1268083 R 521095 CDS YP_003180139.1 257784922 8413993 complement(1268634..1269827) 1 NC_013203.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: apa:APP7_1949 probable NADH-dependent butanol dehydrogenase 1; iron-containing alcohol dehydrogenase 1269827 8413993 Apar_1120 Atopobium parvulum DSM 20469 iron-containing alcohol dehydrogenase YP_003180139.1 1268634 R 521095 CDS YP_003180140.1 257784923 8413994 complement(1269863..1270747) 1 NC_013203.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bsu:BSU11110 hypothetical protein; degV family protein 1270747 8413994 Apar_1121 Atopobium parvulum DSM 20469 degV family protein YP_003180140.1 1269863 R 521095 CDS YP_003180141.1 257784924 8413995 1270913..1271854 1 NC_013203.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppu:PP_2231 hypothetical protein; hypothetical protein 1271854 8413995 Apar_1122 Atopobium parvulum DSM 20469 hypothetical protein YP_003180141.1 1270913 D 521095 CDS YP_003180142.1 257784925 8413996 complement(1271926..1272468) 1 NC_013203.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: son:SO_2833 anaerobic ribonucleotide reductase-activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 1272468 8413996 Apar_1123 Atopobium parvulum DSM 20469 anaerobic ribonucleoside-triphosphate reductase activating protein YP_003180142.1 1271926 R 521095 CDS YP_003180143.1 257784926 8413997 complement(1272582..1274804) 1 NC_013203.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1274804 8413997 Apar_1124 Atopobium parvulum DSM 20469 anaerobic ribonucleoside triphosphate reductase YP_003180143.1 1272582 R 521095 CDS YP_003180144.1 257784927 8413998 complement(1275228..1276217) 1 NC_013203.1 PFAM: glycosyl transferase family 2; KEGG: bpy:Bphyt_0850 glycosyl transferase family 2; glycosyl transferase family protein 1276217 8413998 Apar_1125 Atopobium parvulum DSM 20469 glycosyl transferase family protein YP_003180144.1 1275228 R 521095 CDS YP_003180145.1 257784928 8413999 1276292..1277464 1 NC_013203.1 PFAM: glycosyl transferase family 2; KEGG: bcj:BCAL3239 glucosyltransferase; glycosyl transferase family protein 1277464 8413999 Apar_1126 Atopobium parvulum DSM 20469 glycosyl transferase family protein YP_003180145.1 1276292 D 521095 CDS YP_003180146.1 257784929 8414000 complement(1277524..1278567) 1 NC_013203.1 PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1729 glycosyl transferase family protein; glycosyl transferase family protein 1278567 8414000 Apar_1127 Atopobium parvulum DSM 20469 glycosyl transferase family protein YP_003180146.1 1277524 R 521095 CDS YP_003180147.1 257784930 8414001 complement(1278739..1279479) 1 NC_013203.1 hypothetical protein 1279479 8414001 Apar_1128 Atopobium parvulum DSM 20469 hypothetical protein YP_003180147.1 1278739 R 521095 CDS YP_003180148.1 257784931 8414002 complement(1279675..1280559) 1 NC_013203.1 KEGG: tcx:Tcr_0801 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 1280559 8414002 Apar_1129 Atopobium parvulum DSM 20469 tRNA pseudouridine synthase A YP_003180148.1 1279675 R 521095 CDS YP_003180149.1 257784932 8414003 complement(1280651..1281427) 1 NC_013203.1 PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein; cobalt transport protein 1281427 8414003 Apar_1130 Atopobium parvulum DSM 20469 cobalt transport protein YP_003180149.1 1280651 R 521095 CDS YP_003180150.1 257784933 8414004 complement(1281420..1283132) 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_4065 ABC transporter related; ABC transporter-like protein 1283132 8414004 Apar_1131 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003180150.1 1281420 R 521095 CDS YP_003180151.1 257784934 8414005 complement(1283207..1283692) 1 NC_013203.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: dal:Dalk_1888 ribosomal protein L17; 50S ribosomal protein L17 1283692 8414005 Apar_1132 Atopobium parvulum DSM 20469 50S ribosomal protein L17 YP_003180151.1 1283207 R 521095 CDS YP_003180152.1 257784935 8414006 complement(1283726..1284667) 1 NC_013203.1 KEGG: bar:GBAA0137 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 1284667 8414006 Apar_1133 Atopobium parvulum DSM 20469 DNA-directed RNA polymerase subunit alpha YP_003180152.1 1283726 R 521095 CDS YP_003180153.1 257784936 8414007 complement(1284692..1285285) 1 NC_013203.1 KEGG: gbm:Gbem_0959 ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 1285285 8414007 Apar_1134 Atopobium parvulum DSM 20469 30S ribosomal protein S4 YP_003180153.1 1284692 R 521095 CDS YP_003180154.1 257784937 8414008 complement(1285303..1285704) 1 NC_013203.1 PFAM: ribosomal protein S11; KEGG: bha:BH0161 30S ribosomal protein S11; 30S ribosomal protein S11 1285704 8414008 Apar_1135 Atopobium parvulum DSM 20469 30S ribosomal protein S11 YP_003180154.1 1285303 R 521095 CDS YP_003180155.1 257784938 8414009 complement(1285719..1286087) 1 NC_013203.1 PFAM: ribosomal protein S13; KEGG: ribosomal protein S13 ; K02952 small subunit ribosomal protein S13; 30S ribosomal protein S13 1286087 8414009 Apar_1136 Atopobium parvulum DSM 20469 30S ribosomal protein S13 YP_003180155.1 1285719 R 521095 CDS YP_003180156.1 257784939 8414010 complement(1286103..1286216) 1 NC_013203.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: rpmJ; 50S ribosomal protein L36; 50S ribosomal protein L36 1286216 8414010 Apar_1137 Atopobium parvulum DSM 20469 50S ribosomal protein L36 YP_003180156.1 1286103 R 521095 CDS YP_003180157.1 257784940 8414011 complement(1286362..1286580) 1 NC_013203.1 KEGG: bha:BH0158 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein; translation initiation factor IF-1 1286580 8414011 Apar_1138 Atopobium parvulum DSM 20469 translation initiation factor IF-1 YP_003180157.1 1286362 R 521095 CDS YP_003180158.1 257784941 8414012 complement(1286694..1287482) 1 NC_013203.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: bha:BH0156 methionine aminopeptidase; methionine aminopeptidase 1287482 8414012 Apar_1139 Atopobium parvulum DSM 20469 methionine aminopeptidase YP_003180158.1 1286694 R 521095 CDS YP_003180159.1 257784942 8414013 complement(1287479..1288105) 1 NC_013203.1 TIGRFAM: adenylate kinase; PFAM: adenylate kinase; KEGG: bcu:BCAH820_0144 adenylate kinase; adenylate kinase 1288105 8414013 Apar_1140 Atopobium parvulum DSM 20469 adenylate kinase YP_003180159.1 1287479 R 521095 CDS YP_003180160.1 257784943 8414014 complement(1288173..1289453) 1 NC_013203.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sfu:Sfum_1575 preprotein translocase subunit SecY; preprotein translocase subunit SecY 1289453 8414014 Apar_1141 Atopobium parvulum DSM 20469 preprotein translocase subunit SecY YP_003180160.1 1288173 R 521095 CDS YP_003180161.1 257784944 8414015 complement(1289453..1289899) 1 NC_013203.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: bsu:BSU01350 50S ribosomal protein L15; 50S ribosomal protein L15 1289899 8414015 Apar_1142 Atopobium parvulum DSM 20469 50S ribosomal protein L15 YP_003180161.1 1289453 R 521095 CDS YP_003180162.1 257784945 8414016 complement(1289911..1290096) 1 NC_013203.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: bar:GBAA0128 50S ribosomal protein L30; 50S ribosomal protein L30 1290096 8414016 Apar_1143 Atopobium parvulum DSM 20469 50S ribosomal protein L30 YP_003180162.1 1289911 R 521095 CDS YP_003180163.1 257784946 8414017 complement(1290099..1290620) 1 NC_013203.1 TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein; KEGG: glo:Glov_1363 ribosomal protein S5; 30S ribosomal protein S5 1290620 8414017 Apar_1144 Atopobium parvulum DSM 20469 30S ribosomal protein S5 YP_003180163.1 1290099 R 521095 CDS YP_003180164.1 257784947 8414018 complement(1290630..1290998) 1 NC_013203.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: bcy:Bcer98_0120 50S ribosomal protein L18; 50S ribosomal protein L18 1290998 8414018 Apar_1145 Atopobium parvulum DSM 20469 50S ribosomal protein L18 YP_003180164.1 1290630 R 521095 CDS YP_003180165.1 257784948 8414019 complement(1291067..1291603) 1 NC_013203.1 PFAM: ribosomal protein L6; KEGG: bha:BH0149 50S ribosomal protein L6; 50S ribosomal protein L6 1291603 8414019 Apar_1146 Atopobium parvulum DSM 20469 50S ribosomal protein L6 YP_003180165.1 1291067 R 521095 CDS YP_003180166.1 257784949 8414020 complement(1291631..1292029) 1 NC_013203.1 PFAM: ribosomal protein S8; KEGG: bha:BH0148 30S ribosomal protein S8; 30S ribosomal protein S8 1292029 8414020 Apar_1147 Atopobium parvulum DSM 20469 30S ribosomal protein S8 YP_003180166.1 1291631 R 521095 CDS YP_003180167.1 257784950 8414021 complement(1292119..1292304) 1 NC_013203.1 PFAM: ribosomal protein S14; KEGG: bcu:BCAH820_0135 ribosomal protein S14; 30S ribosomal protein S14 1292304 8414021 Apar_1148 Atopobium parvulum DSM 20469 30S ribosomal protein S14 YP_003180167.1 1292119 R 521095 CDS YP_003180168.1 257784951 8414022 complement(1292429..1292989) 1 NC_013203.1 PFAM: ribosomal protein L5; KEGG: hso:HS_0072 50S ribosomal protein L5; 50S ribosomal protein L5 1292989 8414022 Apar_1149 Atopobium parvulum DSM 20469 50S ribosomal protein L5 YP_003180168.1 1292429 R 521095 CDS YP_003180169.1 257784952 8414023 complement(1293294..1293611) 1 NC_013203.1 KEGG: bar:GBAA0121 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; 50S ribosomal protein L24 1293611 8414023 Apar_1150 Atopobium parvulum DSM 20469 50S ribosomal protein L24 YP_003180169.1 1293294 R 521095 CDS YP_003180170.1 257784953 8414024 complement(1293623..1293991) 1 NC_013203.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: sat:SYN_03257 50S ribosomal protein L14P; 50S ribosomal protein L14 1293991 8414024 Apar_1151 Atopobium parvulum DSM 20469 50S ribosomal protein L14 YP_003180170.1 1293623 R 521095 CDS YP_003180171.1 257784954 8414025 complement(1294102..1294368) 1 NC_013203.1 PFAM: ribosomal protein S17; KEGG: mmw:Mmwyl1_4267 ribosomal protein S17; 30S ribosomal protein S17 1294368 8414025 Apar_1152 Atopobium parvulum DSM 20469 30S ribosomal protein S17 YP_003180171.1 1294102 R 521095 CDS YP_003180172.1 257784955 8414026 complement(1294386..1294601) 1 NC_013203.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: bsu:BSU01240 50S ribosomal protein L29; 50S ribosomal protein L29 1294601 8414026 Apar_1153 Atopobium parvulum DSM 20469 50S ribosomal protein L29 YP_003180172.1 1294386 R 521095 CDS YP_003180173.1 257784956 8414027 complement(1294601..1295026) 1 NC_013203.1 TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: bsu:BSU01230 50S ribosomal protein L16; 50S ribosomal protein L16 1295026 8414027 Apar_1154 Atopobium parvulum DSM 20469 50S ribosomal protein L16 YP_003180173.1 1294601 R 521095 CDS YP_003180174.1 257784957 8414028 complement(1295026..1295736) 1 NC_013203.1 KEGG: sfu:Sfum_1561 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 1295736 8414028 Apar_1155 Atopobium parvulum DSM 20469 30S ribosomal protein S3 YP_003180174.1 1295026 R 521095 CDS YP_003180175.1 257784958 8414029 complement(1295739..1296101) 1 NC_013203.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: bsu:BSU01210 50S ribosomal protein L22; 50S ribosomal protein L22 1296101 8414029 Apar_1156 Atopobium parvulum DSM 20469 50S ribosomal protein L22 YP_003180175.1 1295739 R 521095 CDS YP_003180176.1 257784959 8414030 complement(1296116..1296376) 1 NC_013203.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: bcy:Bcer98_0108 30S ribosomal protein S19; 30S ribosomal protein S19 1296376 8414030 Apar_1157 Atopobium parvulum DSM 20469 30S ribosomal protein S19 YP_003180176.1 1296116 R 521095 CDS YP_003180177.1 257784960 8414031 complement(1296398..1297234) 1 NC_013203.1 TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: dvu:DVU1306 50S ribosomal protein L2; 50S ribosomal protein L2 1297234 8414031 Apar_1158 Atopobium parvulum DSM 20469 50S ribosomal protein L2 YP_003180177.1 1296398 R 521095 CDS YP_003180178.1 257784961 8414032 complement(1297373..1297672) 1 NC_013203.1 PFAM: Ribosomal protein L25/L23; KEGG: pzu:PHZ_c1232 ribosomal protein L23; 50S ribosomal protein L25 1297672 8414032 Apar_1159 Atopobium parvulum DSM 20469 50S ribosomal protein L25 YP_003180178.1 1297373 R 521095 CDS YP_003180179.1 257784962 8414033 complement(1297672..1298298) 1 NC_013203.1 PFAM: ribosomal protein L4/L1e; KEGG: bha:BH0135 50S ribosomal protein L4; 50S ribosomal protein L4 1298298 8414033 Apar_1160 Atopobium parvulum DSM 20469 50S ribosomal protein L4 YP_003180179.1 1297672 R 521095 CDS YP_003180180.1 257784963 8414034 complement(1298338..1298958) 1 NC_013203.1 PFAM: ribosomal protein L3; KEGG: vfm:VFMJ11_0225 50S ribosomal protein L3; 50S ribosomal protein L3 1298958 8414034 Apar_1161 Atopobium parvulum DSM 20469 50S ribosomal protein L3 YP_003180180.1 1298338 R 521095 CDS YP_003180181.1 257784964 8414035 complement(1299266..1299766) 1 NC_013203.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: bha:BH2238 protein-tyrosine-phosphatase; protein tyrosine phosphatase 1299766 8414035 Apar_1162 Atopobium parvulum DSM 20469 protein tyrosine phosphatase YP_003180181.1 1299266 R 521095 CDS YP_003180182.1 257784965 8414036 complement(1299954..1300262) 1 NC_013203.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: bha:BH0133 30S ribosomal protein S10; 30S ribosomal protein S10 1300262 8414036 Apar_1163 Atopobium parvulum DSM 20469 30S ribosomal protein S10 YP_003180182.1 1299954 R 521095 CDS YP_003180183.1 257784966 8414037 complement(1300306..1302402) 1 NC_013203.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: gsu:GSU2860 elongation factor G; translation elongation factor G 1302402 8414037 Apar_1164 Atopobium parvulum DSM 20469 translation elongation factor G YP_003180183.1 1300306 R 521095 CDS YP_003180184.1 257784967 8414038 complement(1302427..1302897) 1 NC_013203.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: bcu:BCAH820_0118 ribosomal protein S7; 30S ribosomal protein S7 1302897 8414038 Apar_1165 Atopobium parvulum DSM 20469 30S ribosomal protein S7 YP_003180184.1 1302427 R 521095 CDS YP_003180185.1 257784968 8414039 complement(1302936..1303364) 1 NC_013203.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: dvm:DvMF_0075 ribosomal protein S12; 30S ribosomal protein S12 1303364 8414039 Apar_1166 Atopobium parvulum DSM 20469 30S ribosomal protein S12 YP_003180185.1 1302936 R 521095 CDS YP_003180186.1 257784969 8414040 complement(1303681..1304556) 1 NC_013203.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_1375 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 1304556 8414040 Apar_1167 Atopobium parvulum DSM 20469 N-acetyltransferase GCN5 YP_003180186.1 1303681 R 521095 CDS YP_003180187.1 257784970 8414041 complement(1304619..1304987) 1 NC_013203.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: abu:Abu_1860 ArsR family transcriptional regulator; ArsR family transcriptional regulator 1304987 8414041 Apar_1168 Atopobium parvulum DSM 20469 ArsR family transcriptional regulator YP_003180187.1 1304619 R 521095 CDS YP_003180188.1 257784971 8414042 complement(1305186..1309613) 1 NC_013203.1 KEGG: bcb:BCB4264_A0124 DNA-directed RNA polymerase, beta' subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 5; RNA polymerase alpha subunit domain protein; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 1309613 8414042 Apar_1169 Atopobium parvulum DSM 20469 DNA-directed RNA polymerase subunit beta' YP_003180188.1 1305186 R 521095 CDS YP_003180189.1 257784972 8414043 complement(1309619..1313134) 1 NC_013203.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; KEGG: DNA-directed RNA polymerase beta chain; DNA-directed RNA polymerase subunit beta 1313134 8414043 Apar_1170 Atopobium parvulum DSM 20469 DNA-directed RNA polymerase subunit beta YP_003180189.1 1309619 R 521095 CDS YP_003180190.1 257784973 8414044 complement(1313500..1313880) 1 NC_013203.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: dds:Ddes_1635 ribosomal protein L7/L12; 50S ribosomal protein L7/L12 1313880 8414044 Apar_1171 Atopobium parvulum DSM 20469 50S ribosomal protein L7/L12 YP_003180190.1 1313500 R 521095 CDS YP_003180191.1 257784974 8414045 complement(1314013..1314534) 1 NC_013203.1 PFAM: ribosomal protein L10; KEGG: bcu:BCAH820_0110 ribosomal protein L10; 50S ribosomal protein L10 1314534 8414045 Apar_1172 Atopobium parvulum DSM 20469 50S ribosomal protein L10 YP_003180191.1 1314013 R 521095 CDS YP_003180192.1 257784975 8414046 complement(1314971..1315678) 1 NC_013203.1 TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: bha:BH0120 50S ribosomal protein L1; 50S ribosomal protein L1 1315678 8414046 Apar_1173 Atopobium parvulum DSM 20469 50S ribosomal protein L1 YP_003180192.1 1314971 R 521095 CDS YP_003180193.1 257784976 8414047 complement(1315835..1316263) 1 NC_013203.1 KEGG: bsu:BSU01020 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 1316263 8414047 Apar_1174 Atopobium parvulum DSM 20469 50S ribosomal protein L11 YP_003180193.1 1315835 R 521095 CDS YP_003180194.1 257784977 8414048 complement(1316360..1316905) 1 NC_013203.1 KEGG: bsu:BSU01010 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; SMART: NGN domain protein; NusG antitermination factor 1316905 8414048 Apar_1175 Atopobium parvulum DSM 20469 NusG antitermination factor YP_003180194.1 1316360 R 521095 CDS YP_003180195.1 257784978 8414049 complement(1316909..1317271) 1 NC_013203.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dal:Dalk_1927 preprotein translocase, SecE subunit; preprotein translocase subunit SecE 1317271 8414049 Apar_1176 Atopobium parvulum DSM 20469 preprotein translocase subunit SecE YP_003180195.1 1316909 R 521095 CDS YP_003180196.1 257784979 8414051 complement(1317436..1317585) 1 NC_013203.1 TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: dvl:Dvul_0446 50S ribosomal protein L33; 50S ribosomal protein L33 1317585 8414051 Apar_1177 Atopobium parvulum DSM 20469 50S ribosomal protein L33 YP_003180196.1 1317436 R 521095 CDS YP_003180197.1 257784980 8414052 complement(1317770..1318975) 1 NC_013203.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: bcc:BCc_343 elongation factor Tu; translation elongation factor Tu 1318975 8414052 Apar_1178 Atopobium parvulum DSM 20469 translation elongation factor Tu YP_003180197.1 1317770 R 521095 CDS YP_003180198.1 257784981 8414057 complement(1320020..1320598) 1 NC_013203.1 PFAM: protein of unknown function DUF901; KEGG: sat:SYN_01764 putative cytoplasmic protein; hypothetical protein 1320598 8414057 Apar_1179 Atopobium parvulum DSM 20469 hypothetical protein YP_003180198.1 1320020 R 521095 CDS YP_003180199.1 257784982 8414058 complement(1320602..1321618) 1 NC_013203.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: mxa:MXAN_3063 RNA methyltransferase, TrmH family, group 3; TrmH family RNA methyltransferase 1321618 8414058 Apar_1180 Atopobium parvulum DSM 20469 TrmH family RNA methyltransferase YP_003180199.1 1320602 R 521095 CDS YP_003180200.1 257784983 8414059 complement(1321621..1323102) 1 NC_013203.1 TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); KEGG: sgl:SG0705 cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 1323102 8414059 Apar_1181 Atopobium parvulum DSM 20469 cysteinyl-tRNA synthetase YP_003180200.1 1321621 R 521095 CDS YP_003180201.1 257784984 8414060 1323346..1324986 1 NC_013203.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abu:Abu_0469 ABC transporter, ATP-binding protein; ABC transporter-like protein 1324986 8414060 Apar_1182 Atopobium parvulum DSM 20469 ABC transporter-like protein YP_003180201.1 1323346 D 521095 CDS YP_003180202.1 257784985 8414061 complement(1324991..1325476) 1 NC_013203.1 KEGG: gbm:Gbem_3798 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1325476 8414061 Apar_1183 Atopobium parvulum DSM 20469 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_003180202.1 1324991 R 521095 CDS YP_003180203.1 257784986 8414062 complement(1325479..1326252) 1 NC_013203.1 KEGG: dal:Dalk_4391 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1326252 8414062 Apar_1184 Atopobium parvulum DSM 20469 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_003180203.1 1325479 R 521095 CDS YP_003180204.1 257784987 8414063 complement(1326282..1327361) 1 NC_013203.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 1327361 8414063 Apar_1185 Atopobium parvulum DSM 20469 DNA integrity scanning protein DisA YP_003180204.1 1326282 R 521095 CDS YP_003180205.1 257784988 8414064 complement(1327595..1330225) 1 NC_013203.1 PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: bha:BH0103 class III stress response-related ATPase; ATPase AAA-2 domain-containing protein 1330225 8414064 Apar_1186 Atopobium parvulum DSM 20469 ATPase AAA-2 domain-containing protein YP_003180205.1 1327595 R 521095 CDS YP_003180206.1 257784989 8414065 complement(1330477..1332078) 1 NC_013203.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: pca:Pcar_1248 lysyl-tRNA synthetase; lysyl-tRNA synthetase 1332078 8414065 Apar_1187 Atopobium parvulum DSM 20469 lysyl-tRNA synthetase YP_003180206.1 1330477 R 521095 CDS YP_003180207.1 257784990 8414066 complement(1332145..1332624) 1 NC_013203.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: bha:BH1276 transcriptional elongation factor; transcription elongation factor GreA 1332624 8414066 Apar_1188 Atopobium parvulum DSM 20469 transcription elongation factor GreA YP_003180207.1 1332145 R 521095 CDS YP_003180208.1 257784991 8414067 complement(1332675..1332887) 1 NC_013203.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: thylakoid assembly protein, putative ; K03116 sec-independent protein translocase protein TatA; twin-arginine translocation protein, TatA/E family subunit 1332887 8414067 Apar_1189 Atopobium parvulum DSM 20469 twin-arginine translocation protein, TatA/E family subunit YP_003180208.1 1332675 R 521095 CDS YP_003180209.1 257784992 8414068 1332984..1333814 1 NC_013203.1 KEGG: dvm:DvMF_1238 spermine synthase; spermidine synthase 1333814 8414068 Apar_1190 Atopobium parvulum DSM 20469 spermidine synthase YP_003180209.1 1332984 D 521095 CDS YP_003180210.1 257784993 8414069 1333903..1335537 1 NC_013203.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1335537 8414069 Apar_1191 Atopobium parvulum DSM 20469 malate dehydrogenase YP_003180210.1 1333903 D 521095 CDS YP_003180211.1 257784994 8414070 complement(1335586..1336572) 1 NC_013203.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: esa:ESA_03308 ribonucleoside hydrolase RihC; inosine/uridine-preferring nucleoside hydrolase 1336572 8414070 Apar_1192 Atopobium parvulum DSM 20469 inosine/uridine-preferring nucleoside hydrolase YP_003180211.1 1335586 R 521095 CDS YP_003180212.1 257784995 8414071 complement(1336647..1337567) 1 NC_013203.1 PFAM: PfkB domain protein; KEGG: pst:PSPTO_2371 ribokinase; PfkB domain-containing protein 1337567 8414071 Apar_1193 Atopobium parvulum DSM 20469 PfkB domain-containing protein YP_003180212.1 1336647 R 521095 CDS YP_003180213.1 257784996 8414072 1338122..1341037 1 NC_013203.1 TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bcb:BCB4264_A4254 magnesium-translocating P- type ATPase; magnesium-translocating P-type ATPase 1341037 8414072 Apar_1194 Atopobium parvulum DSM 20469 magnesium-translocating P-type ATPase YP_003180213.1 1338122 D 521095 CDS YP_003180214.1 257784997 8414073 1341060..1341830 1 NC_013203.1 PFAM: nitroreductase; nitroreductase 1341830 8414073 Apar_1195 Atopobium parvulum DSM 20469 nitroreductase YP_003180214.1 1341060 D 521095 CDS YP_003180215.1 257784998 8414074 1341922..1342629 1 NC_013203.1 PFAM: nitroreductase; KEGG: bsu:BSU07830 hypothetical protein; nitroreductase 1342629 8414074 Apar_1196 Atopobium parvulum DSM 20469 nitroreductase YP_003180215.1 1341922 D 521095 CDS YP_003180216.1 257784999 8414075 complement(1342729..1343784) 1 NC_013203.1 PFAM: protein of unknown function DUF871; KEGG: bcb:BCB4264_A0878 hypothetical protein; hypothetical protein 1343784 8414075 Apar_1197 Atopobium parvulum DSM 20469 hypothetical protein YP_003180216.1 1342729 R 521095 CDS YP_003180217.1 257785000 8414076 complement(1343908..1345395) 1 NC_013203.1 PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: bcb:BCB4264_A0877 PTS system, sucrose- specific IIBC component; PTS system transporter subunit IIC 1345395 8414076 Apar_1198 Atopobium parvulum DSM 20469 PTS system transporter subunit IIC YP_003180217.1 1343908 R 521095 CDS YP_003180218.1 257785001 8414077 complement(1345637..1346530) 1 NC_013203.1 TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS); KEGG: esa:ESA_00699 N-acetylmuramic acid-6- phosphate etherase; RpiR family transcriptional regulator 1346530 8414077 Apar_1199 Atopobium parvulum DSM 20469 RpiR family transcriptional regulator YP_003180218.1 1345637 R 521095 CDS YP_003180219.1 257785002 8414078 complement(1346556..1347470) 1 NC_013203.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: msu:MS0198 DNA-binding transcriptional repressor RpiR; RpiR family transcriptional regulator 1347470 8414078 Apar_1200 Atopobium parvulum DSM 20469 RpiR family transcriptional regulator YP_003180219.1 1346556 R 521095 CDS YP_003180220.1 257785003 8414079 1347949..1349946 1 NC_013203.1 PFAM: beta-lactamase; KEGG: sea:SeAg_B2622 beta-lactamase; beta-lactamase 1349946 8414079 Apar_1201 Atopobium parvulum DSM 20469 beta-lactamase YP_003180220.1 1347949 D 521095 CDS YP_003180221.1 257785004 8414080 complement(1350286..1350834) 1 NC_013203.1 PFAM: NADPH-dependent FMN reductase; KEGG: dar:Daro_2073 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1350834 8414080 Apar_1202 Atopobium parvulum DSM 20469 NADPH-dependent FMN reductase YP_003180221.1 1350286 R 521095 CDS YP_003180222.1 257785005 8414081 complement(1350962..1351492) 1 NC_013203.1 PFAM: GAF domain protein; KEGG: pha:PSHAa1681 hypothetical protein; putative GAF sensor protein 1351492 8414081 Apar_1203 Atopobium parvulum DSM 20469 putative GAF sensor protein YP_003180222.1 1350962 R 521095 CDS YP_003180223.1 257785006 8414082 complement(1351495..1351863) 1 NC_013203.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dsh:Dshi_2070 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 1351863 8414082 Apar_1204 Atopobium parvulum DSM 20469 Glyoxalase/bleomycin resistance protein/dioxygenase YP_003180223.1 1351495 R 521095 CDS YP_003180224.1 257785007 8414083 complement(1351941..1353734) 1 NC_013203.1 TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: bsu:BSU11540 hypothetical protein; oligoendopeptidase F 1353734 8414083 Apar_1205 Atopobium parvulum DSM 20469 oligoendopeptidase F YP_003180224.1 1351941 R 521095 CDS YP_003180225.1 257785008 8414084 complement(1353935..1354312) 1 NC_013203.1 hypothetical protein 1354312 8414084 Apar_1206 Atopobium parvulum DSM 20469 hypothetical protein YP_003180225.1 1353935 R 521095 CDS YP_003180226.1 257785009 8414085 1354548..1354859 1 NC_013203.1 hypothetical protein 1354859 8414085 Apar_1207 Atopobium parvulum DSM 20469 hypothetical protein YP_003180226.1 1354548 D 521095 CDS YP_003180227.1 257785010 8414086 complement(1354959..1355882) 1 NC_013203.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: shw:Sputw3181_1637 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 1355882 8414086 Apar_1208 Atopobium parvulum DSM 20469 C4-dicarboxylate transporter/malic acid transport protein YP_003180227.1 1354959 R 521095 CDS YP_003180228.1 257785011 8414087 1356288..1356641 1 NC_013203.1 KEGG: sfu:Sfum_3046 protein of unknown function UPF0102; hypothetical protein 1356641 8414087 Apar_1209 Atopobium parvulum DSM 20469 hypothetical protein YP_003180228.1 1356288 D 521095 CDS YP_003180229.1 257785012 8414088 complement(1356826..1357656) 1 NC_013203.1 hypothetical protein 1357656 8414088 Apar_1210 Atopobium parvulum DSM 20469 hypothetical protein YP_003180229.1 1356826 R 521095 CDS YP_003180230.1 257785013 8414089 complement(1357646..1358107) 1 NC_013203.1 KEGG: vvy:VV1934 hypothetical protein; hypothetical protein 1358107 8414089 Apar_1211 Atopobium parvulum DSM 20469 hypothetical protein YP_003180230.1 1357646 R 521095 CDS YP_003180231.1 257785014 8414090 complement(1358097..1358525) 1 NC_013203.1 KEGG: mpo:Mpop_3052 hypothetical protein; hypothetical protein 1358525 8414090 Apar_1212 Atopobium parvulum DSM 20469 hypothetical protein YP_003180231.1 1358097 R 521095 CDS YP_003180232.1 257785015 8414091 complement(1358518..1359573) 1 NC_013203.1 McrC protein together with McrB forms the McrBC restriction system; recognizes N4- and C5-methylcytosine (and 5-hydroxy-methylcytosines); appears to act against 5-methylcytosine preceded by a purine residue; MrcC modulates the specificty of McrB and has DNA cleavage activity; 5-methylcytosine-specific restriction enzyme subunit McrC 1359573 8414091 Apar_1213 Atopobium parvulum DSM 20469 5-methylcytosine-specific restriction enzyme subunit McrC YP_003180232.1 1358518 R 521095 CDS YP_003180233.1 257785016 8414092 complement(1359570..1361768) 1 NC_013203.1 Contains selenocysteine; PFAM: ATPase associated with various cellular activities AAA_5; KEGG: efe:EFER_3083 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB; ATPase 1361768 8414092 Apar_1214 Atopobium parvulum DSM 20469 ATPase YP_003180233.1 1359570 R 521095 CDS YP_003180234.1 257785017 8414093 complement(1361780..1363027) 1 NC_013203.1 KEGG: dal:Dalk_1289 hypothetical protein; hypothetical protein 1363027 8414093 Apar_1215 Atopobium parvulum DSM 20469 hypothetical protein YP_003180234.1 1361780 R 521095 CDS YP_003180235.1 257785018 8414095 complement(1363401..1363574) 1 NC_013203.1 hypothetical protein 1363574 8414095 Apar_1217 Atopobium parvulum DSM 20469 hypothetical protein YP_003180235.1 1363401 R 521095 CDS YP_003180236.1 257785019 8414097 1363950..1365503 1 NC_013203.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: bce:BC3914 UDP-N-acetylmuramoylalanyl-D- glutamate--2,6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase 1365503 8414097 Apar_1218 Atopobium parvulum DSM 20469 UDP-N-acetylmuramyl tripeptide synthetase YP_003180236.1 1363950 D 521095 CDS YP_003180237.1 257785020 8414098 complement(1365893..1368364) 1 NC_013203.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: bms:BRA0385 putative phosphoketolase; putative phosphoketolase 1368364 8414098 Apar_1219 Atopobium parvulum DSM 20469 putative phosphoketolase YP_003180237.1 1365893 R 521095 CDS YP_003180238.1 257785021 8414099 complement(1368700..1369830) 1 NC_013203.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: bpy:Bphyt_2260 transcriptional regulator, LacI family; LacI family transcriptional regulator 1369830 8414099 Apar_1220 Atopobium parvulum DSM 20469 LacI family transcriptional regulator YP_003180238.1 1368700 R 521095 CDS YP_003180239.1 257785022 8414100 1369959..1371323 1 NC_013203.1 PFAM: protein of unknown function DUF711; KEGG: ppd:Ppro_0613 hypothetical protein; hypothetical protein 1371323 8414100 Apar_1221 Atopobium parvulum DSM 20469 hypothetical protein YP_003180239.1 1369959 D 521095 CDS YP_003180240.1 257785023 8414101 complement(1371425..1371604) 1 NC_013203.1 hypothetical protein 1371604 8414101 Apar_1222 Atopobium parvulum DSM 20469 hypothetical protein YP_003180240.1 1371425 R 521095 CDS YP_003180241.1 257785024 8414102 1371999..1372592 1 NC_013203.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bha:BH1443 transcriptional regulator; XRE family plasmid maintenance system antidote protein 1372592 8414102 Apar_1223 Atopobium parvulum DSM 20469 XRE family plasmid maintenance system antidote protein YP_003180241.1 1371999 D 521095 CDS YP_003180242.1 257785025 8414103 1372648..1375038 1 NC_013203.1 PFAM: N-6 DNA methylase; protein of unknown function DUF450; KEGG: abu:Abu_1717 type I restriction-modification system, M subunit, putative; N-6 DNA methylase 1375038 8414103 Apar_1224 Atopobium parvulum DSM 20469 N-6 DNA methylase YP_003180242.1 1372648 D 521095 CDS YP_003180243.1 257785026 8414104 1375039..1376418 1 NC_013203.1 KEGG: dol:Dole_2093 restriction modification system DNA specificity subunit; hypothetical protein 1376418 8414104 Apar_1225 Atopobium parvulum DSM 20469 hypothetical protein YP_003180243.1 1375039 D 521095 CDS YP_003180244.1 257785027 8414106 complement(1377014..1378039) 1 NC_013203.1 PFAM: cobalamin synthesis protein P47K; KEGG: acr:Acry_1304 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K 1378039 8414106 Apar_1227 Atopobium parvulum DSM 20469 cobalamin synthesis protein P47K YP_003180244.1 1377014 R 521095 CDS YP_003180245.1 257785028 8414107 complement(1378152..1379210) 1 NC_013203.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hypothetical protein; Alcohol dehydrogenase zinc-binding domain-containing protein 1379210 8414107 Apar_1228 Atopobium parvulum DSM 20469 Alcohol dehydrogenase zinc-binding domain-containing protein YP_003180245.1 1378152 R 521095 CDS YP_003180246.1 257785029 8414108 1379629..1380765 1 NC_013203.1 PFAM: protein of unknown function DUF218; KEGG: bce:BC4795 hypothetical protein; hypothetical protein 1380765 8414108 Apar_1229 Atopobium parvulum DSM 20469 hypothetical protein YP_003180246.1 1379629 D 521095 CDS YP_003180247.1 257785030 8414109 1380812..1383085 1 NC_013203.1 PFAM: sodium/hydrogen exchanger; KEGG: bsu:BSU33420 hypothetical protein; sodium/hydrogen exchanger 1383085 8414109 Apar_1230 Atopobium parvulum DSM 20469 sodium/hydrogen exchanger YP_003180247.1 1380812 D 521095 CDS YP_003180248.1 257785031 8414110 1383216..1383938 1 NC_013203.1 KEGG: ccv:CCV52592_1537 30S ribosomal protein S12; 30S ribosomal protein S12 1383938 8414110 Apar_1231 Atopobium parvulum DSM 20469 30S ribosomal protein S12 YP_003180248.1 1383216 D 521095 CDS YP_003180249.1 257785032 8414111 1383977..1385338 1 NC_013203.1 PFAM: beta-lactamase domain protein; KEGG: bcr:BCAH187_A2853 putative S-layer protein; beta-lactamase domain-containing protein 1385338 8414111 Apar_1232 Atopobium parvulum DSM 20469 beta-lactamase domain-containing protein YP_003180249.1 1383977 D 521095 CDS YP_003180250.1 257785033 8414112 1385338..1385613 1 NC_013203.1 KEGG: ban:BA2804 hypothetical protein; hypothetical protein 1385613 8414112 Apar_1233 Atopobium parvulum DSM 20469 hypothetical protein YP_003180250.1 1385338 D 521095 CDS YP_003180251.1 257785034 8414113 complement(1385749..1387068) 1 NC_013203.1 KEGG: hypothetical protein; hypothetical protein 1387068 8414113 Apar_1234 Atopobium parvulum DSM 20469 hypothetical protein YP_003180251.1 1385749 R 521095 CDS YP_003180252.1 257785035 8414114 complement(1387367..1388671) 1 NC_013203.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sensory histidine protein kinase; histidine kinase 1388671 8414114 Apar_1235 Atopobium parvulum DSM 20469 histidine kinase YP_003180252.1 1387367 R 521095 CDS YP_003180253.1 257785036 8414115 complement(1388712..1389386) 1 NC_013203.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcb:BCB4264_A0608 DNA-binding response regulator; winged helix family two component transcriptional regulator 1389386 8414115 Apar_1236 Atopobium parvulum DSM 20469 winged helix family two component transcriptional regulator YP_003180253.1 1388712 R 521095 CDS YP_003180254.1 257785037 8414117 1389819..1390160 1 NC_013203.1 hypothetical protein 1390160 8414117 Apar_1238 Atopobium parvulum DSM 20469 hypothetical protein YP_003180254.1 1389819 D 521095 CDS YP_003180255.1 257785038 8414118 complement(1390386..1391093) 1 NC_013203.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcr:BCAH187_A3349 DNA-binding protein; XRE family transcriptional regulator 1391093 8414118 Apar_1239 Atopobium parvulum DSM 20469 XRE family transcriptional regulator YP_003180255.1 1390386 R 521095 CDS YP_003180256.1 257785039 8414119 1391342..1391731 1 NC_013203.1 hypothetical protein 1391731 8414119 Apar_1240 Atopobium parvulum DSM 20469 hypothetical protein YP_003180256.1 1391342 D 521095 CDS YP_003180257.1 257785040 8414120 complement(1391783..1392142) 1 NC_013203.1 hypothetical protein 1392142 8414120 Apar_1241 Atopobium parvulum DSM 20469 hypothetical protein YP_003180257.1 1391783 R 521095 CDS YP_003180258.1 257785041 8414121 complement(1392142..1392720) 1 NC_013203.1 PFAM: isochorismatase hydrolase; KEGG: bcz:BCZK2041 pyrazinamidase; isochorismatase hydrolase 1392720 8414121 Apar_1242 Atopobium parvulum DSM 20469 isochorismatase hydrolase YP_003180258.1 1392142 R 521095 CDS YP_003180259.1 257785042 8414122 complement(1392898..1393452) 1 NC_013203.1 PFAM: protein of unknown function UPF0079; KEGG: protein of unknown function UPF0079 ; K06925; hypothetical protein 1393452 8414122 Apar_1243 Atopobium parvulum DSM 20469 hypothetical protein YP_003180259.1 1392898 R 521095 CDS YP_003180260.1 257785043 8414123 complement(1393445..1394110) 1 NC_013203.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: gur:Gura_2925 phage SPO1 DNA polymerase- related protein; phage SPO1 DNA polymerase-like protein 1394110 8414123 Apar_1244 Atopobium parvulum DSM 20469 phage SPO1 DNA polymerase-like protein YP_003180260.1 1393445 R 521095 CDS YP_003180261.1 257785044 8414124 complement(1394110..1395264) 1 NC_013203.1 KEGG: bcy:Bcer98_1563 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1395264 8414124 Apar_1245 Atopobium parvulum DSM 20469 alanine racemase YP_003180261.1 1394110 R 521095 CDS YP_003180262.1 257785045 8414125 complement(1395274..1396899) 1 NC_013203.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; KEGG: acp:A2cp1_2453 carbohydrate kinase, YjeF related protein; carbohydrate kinase 1396899 8414125 Apar_1246 Atopobium parvulum DSM 20469 carbohydrate kinase YP_003180262.1 1395274 R 521095 CDS YP_003180263.1 257785046 8414126 complement(1396903..1397433) 1 NC_013203.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: holo-acyl-carrier-protein synthase ; K00997 holo-; holo-acyl-carrier-protein synthase 1397433 8414126 Apar_1247 Atopobium parvulum DSM 20469 holo-acyl-carrier-protein synthase YP_003180263.1 1396903 R 521095 CDS YP_003180264.1 257785047 8414127 complement(1397458..1398801) 1 NC_013203.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: bcy:Bcer98_0150 phosphoglucosamine mutase; phosphoglucosamine mutase 1398801 8414127 Apar_1248 Atopobium parvulum DSM 20469 phosphoglucosamine mutase YP_003180264.1 1397458 R 521095 CDS YP_003180265.1 257785048 8414128 complement(1399028..1399423) 1 NC_013203.1 PFAM: ribosomal protein S9; KEGG: bsu:BSU01500 30S ribosomal protein S9; 30S ribosomal protein S9 1399423 8414128 Apar_1249 Atopobium parvulum DSM 20469 30S ribosomal protein S9 YP_003180265.1 1399028 R 521095 CDS YP_003180266.1 257785049 8414129 complement(1399427..1399867) 1 NC_013203.1 TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: bha:BH0168 50S ribosomal protein L13; 50S ribosomal protein L13 1399867 8414129 Apar_1250 Atopobium parvulum DSM 20469 50S ribosomal protein L13 YP_003180266.1 1399427 R 521095 CDS YP_003180267.1 257785050 8414130 1400239..1401264 1 NC_013203.1 PFAM: putative esterase; KEGG: bma:BMAA1289 putative esterase; putative esterase 1401264 8414130 Apar_1251 Atopobium parvulum DSM 20469 putative esterase YP_003180267.1 1400239 D 521095 CDS YP_003180268.1 257785051 8414131 1401364..1402302 1 NC_013203.1 KEGG: mpo:Mpop_1188 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 1402302 8414131 Apar_1252 Atopobium parvulum DSM 20469 1-phosphofructokinase YP_003180268.1 1401364 D 521095 CDS YP_003180269.1 257785052 8414132 complement(1402546..1403460) 1 NC_013203.1 PFAM: Patatin; KEGG: asu:Asuc_1370 patatin; patatin 1403460 8414132 Apar_1253 Atopobium parvulum DSM 20469 patatin YP_003180269.1 1402546 R 521095 CDS YP_003180270.1 257785053 8414133 1403776..1404870 1 NC_013203.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: swp:swp_1457 helix-turn-helix motif protein; XRE family transcriptional regulator 1404870 8414133 Apar_1254 Atopobium parvulum DSM 20469 XRE family transcriptional regulator YP_003180270.1 1403776 D 521095 CDS YP_003180271.1 257785054 8414134 complement(1404973..1406067) 1 NC_013203.1 PFAM: protein of unknown function DUF871; KEGG: bcy:Bcer98_0651 hypothetical protein; hypothetical protein 1406067 8414134 Apar_1255 Atopobium parvulum DSM 20469 hypothetical protein YP_003180271.1 1404973 R 521095 CDS YP_003180272.1 257785055 8414135 complement(1406158..1407444) 1 NC_013203.1 KEGG: bcb:BCB4264_A2418 putative PTS system, cellobiose-specific IIC component; TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system EIIC; PTS system lactose/cellobiose family transporter subunit IIC 1407444 8414135 Apar_1256 Atopobium parvulum DSM 20469 PTS system lactose/cellobiose family transporter subunit IIC YP_003180272.1 1406158 R 521095 CDS YP_003180273.1 257785056 8414136 complement(1407514..1407828) 1 NC_013203.1 PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: vfm:VFMJ11_0618 BglE; PTS system lactose/cellobiose-specific transporter subunit IIB 1407828 8414136 Apar_1257 Atopobium parvulum DSM 20469 PTS system lactose/cellobiose-specific transporter subunit IIB YP_003180273.1 1407514 R 521095 CDS YP_003180274.1 257785057 8414137 complement(1408035..1412291) 1 NC_013203.1 KEGG: bsu:BSU27030 levanase; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Glycosyl hydrolase family 32 domain protein; Ig domain protein group 2 domain protein; G5 domain protein; sugar-binding domain protein; SMART: glycoside hydrolase family 32; Ig domain protein group 2 domain protein; LPXTG-motif cell wall anchor domain-containing protein 1412291 8414137 Apar_1258 Atopobium parvulum DSM 20469 LPXTG-motif cell wall anchor domain-containing protein YP_003180274.1 1408035 R 521095 CDS YP_003180275.1 257785058 8414138 complement(1412646..1413164) 1 NC_013203.1 hypothetical protein 1413164 8414138 Apar_1259 Atopobium parvulum DSM 20469 hypothetical protein YP_003180275.1 1412646 R 521095 CDS YP_003180276.1 257785059 8414139 complement(1413237..1413680) 1 NC_013203.1 PFAM: LytTr DNA-binding region; KEGG: bcr:BCAH187_A5380 response regulator, LytTR family; response regulator receiver protein 1413680 8414139 Apar_1260 Atopobium parvulum DSM 20469 response regulator receiver protein YP_003180276.1 1413237 R 521095 CDS YP_003180277.1 257785060 8414140 complement(1414174..1415148) 1 NC_013203.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: bca:BCE_1804 sortase family protein; sortase family protein 1415148 8414140 Apar_1261 Atopobium parvulum DSM 20469 sortase family protein YP_003180277.1 1414174 R 521095 CDS YP_003180278.1 257785061 8414141 complement(1415174..1416601) 1 NC_013203.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein; KEGG: bce:BC2508 collagen adhesion protein; LPXTG-motif cell wall anchor domain-containing protein 1416601 8414141 Apar_1262 Atopobium parvulum DSM 20469 LPXTG-motif cell wall anchor domain-containing protein YP_003180278.1 1415174 R 521095 CDS YP_003180279.1 257785062 8414142 complement(1416740..1419331) 1 NC_013203.1 PFAM: Cna B domain protein; von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: ppf:Pput_0188 hypothetical protein; Cna B domain-containing protein 1419331 8414142 Apar_1263 Atopobium parvulum DSM 20469 Cna B domain-containing protein YP_003180279.1 1416740 R 521095 CDS YP_003180280.1 257785063 8414143 complement(1419596..1421656) 1 NC_013203.1 TIGRFAM: conserved repeat domain protein; KEGG: bca:BCE_3690 hypothetical protein; hypothetical protein 1421656 8414143 Apar_1264 Atopobium parvulum DSM 20469 hypothetical protein YP_003180280.1 1419596 R 521095 CDS YP_003180281.1 257785064 8414145 complement(1422218..1423906) 1 NC_013203.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH- dependent FMN reductase; KEGG: dal:Dalk_1123 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 1423906 8414145 Apar_1266 Atopobium parvulum DSM 20469 NAD(P)H dehydrogenase (quinone) YP_003180281.1 1422218 R 521095 CDS YP_003180282.1 257785065 8414146 complement(1423887..1424444) 1 NC_013203.1 PFAM: transcriptional regulator PadR family protein; KEGG: scl:sce6005 transcriptional regulator; PadR-like family transcriptional regulator 1424444 8414146 Apar_1267 Atopobium parvulum DSM 20469 PadR-like family transcriptional regulator YP_003180282.1 1423887 R 521095 CDS YP_003180283.1 257785066 8414147 complement(1424688..1425554) 1 NC_013203.1 PFAM: beta-lactamase domain protein; KEGG: gsu:GSU2769 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1425554 8414147 Apar_1268 Atopobium parvulum DSM 20469 beta-lactamase domain-containing protein YP_003180283.1 1424688 R 521095 CDS YP_003180284.1 257785067 8414148 complement(1425570..1426361) 1 NC_013203.1 PFAM: Methyltransferase type 11; methyltransferase small; Methyltransferase type 12; KEGG: bcz:pE33L466_0386 methyltransferase; type 11 methyltransferase 1426361 8414148 Apar_1269 Atopobium parvulum DSM 20469 type 11 methyltransferase YP_003180284.1 1425570 R 521095 CDS YP_003180285.1 257785068 8414150 complement(1427122..1427814) 1 NC_013203.1 PFAM: protein of unknown function DUF1275; KEGG: bur:Bcep18194_A6355 hypothetical protein; hypothetical protein 1427814 8414150 Apar_1270 Atopobium parvulum DSM 20469 hypothetical protein YP_003180285.1 1427122 R 521095 CDS YP_003180286.1 257785069 8414151 complement(1427986..1428123) 1 NC_013203.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dds:Ddes_2011 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 1428123 8414151 Apar_1271 Atopobium parvulum DSM 20469 rubredoxin-type Fe(Cys)4 protein YP_003180286.1 1427986 R 521095 CDS YP_003180287.1 257785070 8414152 complement(1428383..1428868) 1 NC_013203.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: ppd:Ppro_1314 SsrA-binding protein; SsrA-binding protein 1428868 8414152 Apar_1272 Atopobium parvulum DSM 20469 SsrA-binding protein YP_003180287.1 1428383 R 521095 CDS YP_003180288.1 257785071 8414153 complement(1428871..1429806) 1 NC_013203.1 SMART: Tetratricopeptide domain protein; KEGG: ppd:Ppro_2478 TPR repeat-containing protein; hypothetical protein 1429806 8414153 Apar_1273 Atopobium parvulum DSM 20469 hypothetical protein YP_003180288.1 1428871 R 521095 CDS YP_003180289.1 257785072 8414154 complement(1429888..1431900) 1 NC_013203.1 KEGG: bha:BH3553 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; VacB and RNase II family 3'-5' exoribonuclease 1431900 8414154 Apar_1274 Atopobium parvulum DSM 20469 VacB and RNase II family 3'-5' exoribonuclease YP_003180289.1 1429888 R 521095 CDS YP_003180290.1 257785073 8414155 complement(1432133..1433380) 1 NC_013203.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: swi:Swit_0681 amidohydrolase; amidohydrolase 1433380 8414155 Apar_1275 Atopobium parvulum DSM 20469 amidohydrolase YP_003180290.1 1432133 R 521095 CDS YP_003180291.1 257785074 8414156 complement(1433516..1434958) 1 NC_013203.1 PFAM: amino acid permease-associated region; KEGG: prw:PsycPRwf_1531 amino acid permease- associated region; amino acid permease-associated protein 1434958 8414156 Apar_1276 Atopobium parvulum DSM 20469 amino acid permease-associated protein YP_003180291.1 1433516 R 521095 CDS YP_003180292.1 257785075 8414157 complement(1435183..1436031) 1 NC_013203.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bha:BH2117 LysR family transcriptional regulator; LysR family transcriptional regulator 1436031 8414157 Apar_1277 Atopobium parvulum DSM 20469 LysR family transcriptional regulator YP_003180292.1 1435183 R 521095 CDS YP_003180293.1 257785076 8414158 complement(1436229..1437164) 1 NC_013203.1 PFAM: protein of unknown function DUF214; KEGG: bha:BH3601 cell-division protein; cell division protein FtsX 1437164 8414158 Apar_1278 Atopobium parvulum DSM 20469 cell division protein FtsX YP_003180293.1 1436229 R 521095 CDS YP_003180294.1 257785077 8414159 complement(1437142..1438170) 1 NC_013203.1 KEGG: bsu:BSU35260 cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 1438170 8414159 Apar_1279 Atopobium parvulum DSM 20469 cell division ATP-binding protein FtsE YP_003180294.1 1437142 R 521095 CDS YP_003180295.1 257785078 8414160 complement(1438783..1439433) 1 NC_013203.1 PFAM: KDPG and KHG aldolase; KEGG: bcz:pE33L466_0341 keto-hydroxyglutarate- aldolase/keto-deoxy-phosphogluconate aldolase; KDPG and KHG aldolase 1439433 8414160 Apar_1280 Atopobium parvulum DSM 20469 KDPG and KHG aldolase YP_003180295.1 1438783 R 521095 CDS YP_003180296.1 257785079 8414161 complement(1439506..1440402) 1 NC_013203.1 PFAM: dihydrodipicolinate synthetase; KEGG: asu:Asuc_1954 dihydrodipicolinate synthase; dihydrodipicolinate synthetase 1440402 8414161 Apar_1281 Atopobium parvulum DSM 20469 dihydrodipicolinate synthetase YP_003180296.1 1439506 R 521095 CDS YP_003180297.1 257785080 8414162 complement(1440442..1441050) 1 NC_013203.1 PFAM: sugar isomerase (SIS); KEGG: apl:APL_0387 arabinose-5-phosphate isomerase; sugar isomerase (SIS) 1441050 8414162 Apar_1282 Atopobium parvulum DSM 20469 sugar isomerase (SIS) YP_003180297.1 1440442 R 521095 CDS YP_003180298.1 257785081 8414163 complement(1441107..1441706) 1 NC_013203.1 hypothetical protein 1441706 8414163 Apar_1283 Atopobium parvulum DSM 20469 hypothetical protein YP_003180298.1 1441107 R 521095 CDS YP_003180299.1 257785082 8414164 complement(1441805..1443112) 1 NC_013203.1 PFAM: putative sugar-specific permease SgaT/UlaA; KEGG: bca:BCE_2981 ascorbate-specific PTS system enzyme IIC; putative sugar-specific permease SgaT/UlaA 1443112 8414164 Apar_1284 Atopobium parvulum DSM 20469 putative sugar-specific permease SgaT/UlaA YP_003180299.1 1441805 R 521095 CDS YP_003180300.1 257785083 8414165 complement(1443271..1443570) 1 NC_013203.1 PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: pin:Ping_2056 phosphotransferase system, lactose/cellobiose-specific IIB subunit; PTS system lactose/cellobiose-specific transporter subunit IIB 1443570 8414165 Apar_1285 Atopobium parvulum DSM 20469 PTS system lactose/cellobiose-specific transporter subunit IIB YP_003180300.1 1443271 R 521095 CDS YP_003180301.1 257785084 8414166 complement(1443570..1444025) 1 NC_013203.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: vvy:VVA1331 phosphotransferase system mannitol/fructose-specific IIA component; putative PTS IIA-like nitrogen-regulatory protein PtsN 1444025 8414166 Apar_1286 Atopobium parvulum DSM 20469 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_003180301.1 1443570 R 521095 CDS YP_003180302.1 257785085 8414167 1444405..1445187 1 NC_013203.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein ArsR; SMART: regulatory protein DeoR; KEGG: pmr:PMI2141 aga operon transcriptional repressor (DeoR-family transcriptional regulator); DeoR family transcriptional regulator 1445187 8414167 Apar_1287 Atopobium parvulum DSM 20469 DeoR family transcriptional regulator YP_003180302.1 1444405 D 521095 CDS YP_003180303.1 257785086 8414168 complement(1445345..1446226) 1 NC_013203.1 PFAM: protein of unknown function DUF161; KEGG: bha:BH1678 hypothetical protein; hypothetical protein 1446226 8414168 Apar_1288 Atopobium parvulum DSM 20469 hypothetical protein YP_003180303.1 1445345 R 521095 CDS YP_003180304.1 257785087 8414169 complement(1446228..1447337) 1 NC_013203.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: hypothetical protein ; K02836 peptide chain release factor RF-2; peptide chain release factor 2 1447337 8414169 Apar_1289 Atopobium parvulum DSM 20469 peptide chain release factor 2 YP_003180304.1 1446228 R 521095 CDS YP_003180305.1 257785088 8414170 complement(1447340..1450090) 1 NC_013203.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; SEC-C motif domain protein; KEGG: ajs:Ajs_0796 preprotein translocase subunit SecA; preprotein translocase subunit SecA 1450090 8414170 Apar_1290 Atopobium parvulum DSM 20469 preprotein translocase subunit SecA YP_003180305.1 1447340 R 521095 CDS YP_003180306.1 257785089 8414171 complement(1450181..1453216) 1 NC_013203.1 KEGG: afw:Anae109_3347 transcriptional activator domain-containing protein; SARP family transcriptional regulator 1453216 8414171 Apar_1291 Atopobium parvulum DSM 20469 SARP family transcriptional regulator YP_003180306.1 1450181 R 521095 CDS YP_003180307.1 257785090 8414176 complement(1459146..1460561) 1 NC_013203.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gme:Gmet_0135 phosphoglucomutase/phosphomannomutase alpha/beta/subunit; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 1460561 8414176 Apar_1292 Atopobium parvulum DSM 20469 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_003180307.1 1459146 R 521095 CDS YP_003180308.1 257785091 8414177 complement(1460542..1461435) 1 NC_013203.1 PFAM: Nucleotidyl transferase; KEGG: bha:BH3717 UTP-glucose-1-phosphate uridylyltransferase; nucleotidyl transferase 1461435 8414177 Apar_1293 Atopobium parvulum DSM 20469 nucleotidyl transferase YP_003180308.1 1460542 R 521095 CDS YP_003180309.1 257785092 8414178 complement(1461556..1461984) 1 NC_013203.1 PFAM: iron dependent repressor; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor; DtxR family iron (metal) dependent repressor 1461984 8414178 Apar_1294 Atopobium parvulum DSM 20469 DtxR family iron (metal) dependent repressor YP_003180309.1 1461556 R 521095 CDS YP_003180310.1 257785093 8414179 complement(1462093..1463316) 1 NC_013203.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcy:Bcer98_3735 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 1463316 8414179 Apar_1295 Atopobium parvulum DSM 20469 cell envelope-related transcriptional attenuator YP_003180310.1 1462093 R 521095 CDS YP_003180311.1 257785094 8414180 complement(1463320..1464603) 1 NC_013203.1 TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: glo:Glov_0818 UDP-N-acetylglucosamine 1- carboxyvinyltransferase; UDP-N-acetylglucosamine1- carboxyvinyltransferase 1464603 8414180 Apar_1296 Atopobium parvulum DSM 20469 UDP-N-acetylglucosamine1- carboxyvinyltransferase YP_003180311.1 1463320 R 521095 CDS YP_003180312.1 257785095 8414181 complement(1464631..1465053) 1 NC_013203.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: amc:MADE_04082 membrane-bound ATP synthase, F1 sector, epsilon-subunit; ATP synthase F1 subunit epsilon 1465053 8414181 Apar_1297 Atopobium parvulum DSM 20469 ATP synthase F1 subunit epsilon YP_003180312.1 1464631 R 521095 CDS YP_003180313.1 257785096 8414182 complement(1465062..1466543) 1 NC_013203.1 KEGG: bcy:Bcer98_3825 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta 1466543 8414182 Apar_1298 Atopobium parvulum DSM 20469 ATP synthase F1 subunit beta YP_003180313.1 1465062 R 521095 CDS YP_003180314.1 257785097 8414183 complement(1466543..1467460) 1 NC_013203.1 KEGG: bsu:BSU36820 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma 1467460 8414183 Apar_1299 Atopobium parvulum DSM 20469 ATP synthase F1 subunit gamma YP_003180314.1 1466543 R 521095 CDS YP_003180315.1 257785098 8414184 complement(1467467..1469140) 1 NC_013203.1 KEGG: bcb:BCB4264_A5429 ATP synthase F1, alpha subunit; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 subunit alpha 1469140 8414184 Apar_1300 Atopobium parvulum DSM 20469 ATP synthase F1 subunit alpha YP_003180315.1 1467467 R 521095 CDS YP_003180316.1 257785099 8414185 complement(1469140..1469613) 1 NC_013203.1 PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: vha:VIBHAR_06107 ATP synthase F1, delta subunit; H+-transporting two-sector ATPase subunit delta 1469613 8414185 Apar_1301 Atopobium parvulum DSM 20469 H+-transporting two-sector ATPase subunit delta YP_003180316.1 1469140 R 521095 CDS YP_003180317.1 257785100 8414186 complement(1469603..1470214) 1 NC_013203.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: bcy:Bcer98_3829 F0F1 ATP synthase subunit B; ATP synthase F0 subunit B 1470214 8414186 Apar_1302 Atopobium parvulum DSM 20469 ATP synthase F0 subunit B YP_003180317.1 1469603 R 521095 CDS YP_003180318.1 257785101 8414187 complement(1470257..1470451) 1 NC_013203.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: dde:Dde_2701 ATP synthase F0, C subunit; H+transporting two-sector ATPase subunit C 1470451 8414187 Apar_1303 Atopobium parvulum DSM 20469 H+transporting two-sector ATPase subunit C YP_003180318.1 1470257 R 521095 CDS YP_003180319.1 257785102 8414188 complement(1470588..1471388) 1 NC_013203.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: mxa:MXAN_0402 ATP synthase F0, A subunit; ATP synthase F0 subunit A 1471388 8414188 Apar_1304 Atopobium parvulum DSM 20469 ATP synthase F0 subunit A YP_003180319.1 1470588 R 521095 CDS YP_003180320.1 257785103 8414189 complement(1471436..1471591) 1 NC_013203.1 hypothetical protein 1471591 8414189 Apar_1305 Atopobium parvulum DSM 20469 hypothetical protein YP_003180320.1 1471436 R 521095 CDS YP_003180321.1 257785104 8414190 complement(1471897..1472541) 1 NC_013203.1 KEGG: bcb:BCB4264_A5437 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 1472541 8414190 Apar_1306 Atopobium parvulum DSM 20469 uracil phosphoribosyltransferase YP_003180321.1 1471897 R 521095 CDS YP_003180322.1 257785105 8414191 complement(1472664..1473128) 1 NC_013203.1 KEGG: sus:Acid_7018 ribose-5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase 1473128 8414191 Apar_1307 Atopobium parvulum DSM 20469 RpiB/LacA/LacB family sugar-phosphate isomerase YP_003180322.1 1472664 R 521095 CDS YP_003180323.1 257785106 8414192 complement(1473218..1473868) 1 NC_013203.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: mxa:MXAN_1545 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 1473868 8414192 Apar_1308 Atopobium parvulum DSM 20469 Sua5/YciO/YrdC/YwlC family protein YP_003180323.1 1473218 R 521095 CDS YP_003180324.1 257785107 8414193 complement(1473925..1474818) 1 NC_013203.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: mxa:MXAN_4908 putative protein methyltransferase HemK; HemK family modification methylase 1474818 8414193 Apar_1309 Atopobium parvulum DSM 20469 HemK family modification methylase YP_003180324.1 1473925 R 521095 CDS YP_003180325.1 257785108 8414194 complement(1474831..1475898) 1 NC_013203.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sus:Acid_6670 peptide chain release factor 1; peptide chain release factor 1 1475898 8414194 Apar_1310 Atopobium parvulum DSM 20469 peptide chain release factor 1 YP_003180325.1 1474831 R 521095 CDS YP_003180326.1 257785109 8414195 1476114..1477802 1 NC_013203.1 KEGG: hypothetical protein; hypothetical protein 1477802 8414195 Apar_1311 Atopobium parvulum DSM 20469 hypothetical protein YP_003180326.1 1476114 D 521095 CDS YP_003180327.1 257785110 8414196 complement(1477875..1478564) 1 NC_013203.1 PFAM: SNARE associated Golgi protein; KEGG: sfv:SFV_2386 hypothetical protein; hypothetical protein 1478564 8414196 Apar_1312 Atopobium parvulum DSM 20469 hypothetical protein YP_003180327.1 1477875 R 521095 CDS YP_003180328.1 257785111 8414198 complement(1478776..1479114) 1 NC_013203.1 hypothetical protein 1479114 8414198 Apar_1313 Atopobium parvulum DSM 20469 hypothetical protein YP_003180328.1 1478776 R 521095 CDS YP_003180329.1 257785112 8414199 complement(1479207..1480025) 1 NC_013203.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: aha:AHA_2339 fructose permease IID component; PTS system mannose/fructose/sorbose family transporter subunit IID 1480025 8414199 Apar_1314 Atopobium parvulum DSM 20469 PTS system mannose/fructose/sorbose family transporter subunit IID YP_003180329.1 1479207 R 521095 CDS YP_003180330.1 257785113 8414200 complement(1480028..1480894) 1 NC_013203.1 PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: spe:Spro_4279 phosphotransferase system PTS sorbose-specific IIC subunit; PTS sorbose-specific transporter subunit IIC 1480894 8414200 Apar_1315 Atopobium parvulum DSM 20469 PTS sorbose-specific transporter subunit IIC YP_003180330.1 1480028 R 521095 CDS YP_003180331.1 257785114 8414201 complement(1480914..1481408) 1 NC_013203.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: spe:Spro_4280 PTS system sorbose subfamily IIB component; PTS system sorbose subfamily transporter subunit IIB 1481408 8414201 Apar_1316 Atopobium parvulum DSM 20469 PTS system sorbose subfamily transporter subunit IIB YP_003180331.1 1480914 R 521095 CDS YP_003180332.1 257785115 8414202 complement(1481463..1481894) 1 NC_013203.1 PFAM: PTS system fructose subfamily IIA component; KEGG: ent:Ent638_2386 PTS system mannose/fructose/sorbose family IIA subunit; PTS system fructose subfamily transporter subunit IIA 1481894 8414202 Apar_1317 Atopobium parvulum DSM 20469 PTS system fructose subfamily transporter subunit IIA YP_003180332.1 1481463 R 521095 CDS YP_003180333.1 257785116 8414203 complement(1482271..1483977) 1 NC_013203.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1483977 pgi 8414203 pgi Atopobium parvulum DSM 20469 glucose-6-phosphate isomerase YP_003180333.1 1482271 R 521095 CDS YP_003180334.1 257785117 8414204 complement(1484074..1484601) 1 NC_013203.1 hypothetical protein 1484601 8414204 Apar_1319 Atopobium parvulum DSM 20469 hypothetical protein YP_003180334.1 1484074 R 521095 CDS YP_003180335.1 257785118 8414205 1484753..1485070 1 NC_013203.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dds:Ddes_1199 thioredoxin; thioredoxin 1485070 8414205 Apar_1320 Atopobium parvulum DSM 20469 thioredoxin YP_003180335.1 1484753 D 521095 CDS YP_003180336.1 257785119 8414206 1485170..1485886 1 NC_013203.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: net:Neut_0532 phosphoesterase, PA-phosphatase- related protein; PA-phosphatase-like phosphoesterase 1485886 8414206 Apar_1321 Atopobium parvulum DSM 20469 PA-phosphatase-like phosphoesterase YP_003180336.1 1485170 D 521095 CDS YP_003180337.1 257785120 8414207 complement(1485846..1486343) 1 NC_013203.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: pst:PSPTO_2610 phosphoesterase, putative; phosphodiesterase 1486343 8414207 Apar_1322 Atopobium parvulum DSM 20469 phosphodiesterase YP_003180337.1 1485846 R 521095 CDS YP_003180338.1 257785121 8414208 complement(1486396..1487109) 1 NC_013203.1 PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: gme:Gmet_2697 LytR/AlgR family transcriptional regulator; LytTR family two component transcriptional regulator 1487109 8414208 Apar_1323 Atopobium parvulum DSM 20469 LytTR family two component transcriptional regulator YP_003180338.1 1486396 R 521095 CDS YP_003180339.1 257785122 8414209 complement(1487158..1488459) 1 NC_013203.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0160 ATP-binding region, ATPase-like; signal transduction histidine kinase LytS 1488459 8414209 Apar_1324 Atopobium parvulum DSM 20469 signal transduction histidine kinase LytS YP_003180339.1 1487158 R 521095 CDS YP_003180340.1 257785123 8414210 complement(1488505..1489131) 1 NC_013203.1 PFAM: protein of unknown function DUF988; KEGG: bcr:BCAH187_A1767 hypothetical protein; hypothetical protein 1489131 8414210 Apar_1325 Atopobium parvulum DSM 20469 hypothetical protein YP_003180340.1 1488505 R 521095 CDS YP_003180341.1 257785124 8414211 complement(1489348..1490094) 1 NC_013203.1 PFAM: CobB/CobQ domain protein glutamine amidotransferase; CobB/CobQ domain-containing protein glutamine amidotransferase 1490094 8414211 Apar_1326 Atopobium parvulum DSM 20469 CobB/CobQ domain-containing protein glutamine amidotransferase YP_003180341.1 1489348 R 521095 CDS YP_003180342.1 257785125 8414212 complement(1490087..1491499) 1 NC_013203.1 PFAM: Mur ligase middle domain protein; KEGG: met:M446_1685 UDP-N-acetylmuramoylalanine--D- glutamate ligase; Mur ligase middle domain-containing protein 1491499 8414212 Apar_1327 Atopobium parvulum DSM 20469 Mur ligase middle domain-containing protein YP_003180342.1 1490087 R 521095 CDS YP_003180343.1 257785126 8414213 complement(1491648..1495202) 1 NC_013203.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase; pyruvate ferredoxin/flavodoxin oxidoreductase 1495202 8414213 Apar_1328 Atopobium parvulum DSM 20469 pyruvate ferredoxin/flavodoxin oxidoreductase YP_003180343.1 1491648 R 521095 CDS YP_003180344.1 257785127 8414214 complement(1495596..1496258) 1 NC_013203.1 hypothetical protein 1496258 8414214 Apar_1329 Atopobium parvulum DSM 20469 hypothetical protein YP_003180344.1 1495596 R 521095 CDS YP_003180345.1 257785128 8414215 complement(1496311..1497900) 1 NC_013203.1 KEGG: gsu:GSU0609 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1497900 8414215 Apar_1330 Atopobium parvulum DSM 20469 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_003180345.1 1496311 R 521095 CDS YP_003180346.1 257785129 8414216 1498041..1498670 1 NC_013203.1 PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase, GNAT family; N-acetyltransferase GCN5 1498670 8414216 Apar_1331 Atopobium parvulum DSM 20469 N-acetyltransferase GCN5 YP_003180346.1 1498041 D 521095 CDS YP_003180347.1 257785130 8414217 1498673..1499608 1 NC_013203.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: dds:Ddes_1769 glutamyl-tRNA synthetase class Ic; Glutamate--tRNA ligase 1499608 8414217 Apar_1332 Atopobium parvulum DSM 20469 Glutamate--tRNA ligase YP_003180347.1 1498673 D 521095 CDS YP_003180348.1 257785131 8414218 1499605..1500285 1 NC_013203.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sus:Acid_6896 heavy metal sensor signal transduction histidine kinase; histidine kinase 1500285 8414218 Apar_1333 Atopobium parvulum DSM 20469 histidine kinase YP_003180348.1 1499605 D 521095 CDS YP_003180349.1 257785132 8414219 complement(1500260..1500979) 1 NC_013203.1 KEGG: bcr:BCAH187_A0759 trehalose operon repressor; TIGRFAM: trehalose operon repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 1500979 8414219 Apar_1334 Atopobium parvulum DSM 20469 GntR family transcriptional regulator YP_003180349.1 1500260 R 521095 CDS YP_003180350.1 257785133 8414220 1501196..1502689 1 NC_013203.1 TIGRFAM: PTS system, trehalose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: pin:Ping_0522 trehalose(maltose)-specific PTS system components IIBC; PTS system trehalose-specific transporter subunit IIBC 1502689 8414220 Apar_1335 Atopobium parvulum DSM 20469 PTS system trehalose-specific transporter subunit IIBC YP_003180350.1 1501196 D 521095 CDS YP_003180351.1 257785134 8414221 1502713..1504410 1 NC_013203.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: stt:t4488 trehalose-6-phosphate hydrolase; alpha amylase 1504410 8414221 Apar_1336 Atopobium parvulum DSM 20469 alpha amylase YP_003180351.1 1502713 D 521095 CDS YP_003180352.1 257785135 8414224 complement(1505118..1505438) 1 NC_013203.1 hypothetical protein 1505438 8414224 Apar_1337 Atopobium parvulum DSM 20469 hypothetical protein YP_003180352.1 1505118 R 521095 CDS YP_003180353.1 257785136 8414225 complement(1505583..1506866) 1 NC_013203.1 KEGG: dal:Dalk_4396 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like; seryl-tRNA synthetase 1506866 8414225 Apar_1338 Atopobium parvulum DSM 20469 seryl-tRNA synthetase YP_003180353.1 1505583 R 521095 CDS YP_003180354.1 257785137 8414226 1506977..1507198 1 NC_013203.1 hypothetical protein 1507198 8414226 Apar_1339 Atopobium parvulum DSM 20469 hypothetical protein YP_003180354.1 1506977 D 521095 CDS YP_003180355.1 257785138 8414228 1507460..1509253 1 NC_013203.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: pol:Bpro_1235 serine/threonine protein kinase; serine/threonine protein kinase 1509253 8414228 Apar_1340 Atopobium parvulum DSM 20469 serine/threonine protein kinase YP_003180355.1 1507460 D 521095 CDS YP_003180356.1 257785139 8414229 1509240..1510364 1 NC_013203.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce2902 GGDEF domain-containing protein; FHA domain-containing protein 1510364 8414229 Apar_1341 Atopobium parvulum DSM 20469 FHA domain-containing protein YP_003180356.1 1509240 D 521095 CDS YP_003180357.1 257785140 8414230 1510364..1510777 1 NC_013203.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce3771 sigma-54 dependent transcriptional regulator; FHA domain-containing protein 1510777 8414230 Apar_1342 Atopobium parvulum DSM 20469 FHA domain-containing protein YP_003180357.1 1510364 D 521095 CDS YP_003180358.1 257785141 8414231 1510860..1512044 1 NC_013203.1 PFAM: Protein phosphatase 2C-like; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: dps:DP2574 serine/threonine protein phosphatase; protein serine/threonine phosphatase 1512044 8414231 Apar_1343 Atopobium parvulum DSM 20469 protein serine/threonine phosphatase YP_003180358.1 1510860 D 521095 CDS YP_003180359.1 257785142 8414232 1512047..1514911 1 NC_013203.1 PFAM: cell cycle protein; penicillin-binding protein transpeptidase; KEGG: dps:DP2425 cell division protein (FtsW); peptidoglycan glycosyltransferase 1514911 8414232 Apar_1344 Atopobium parvulum DSM 20469 peptidoglycan glycosyltransferase YP_003180359.1 1512047 D 521095 CDS YP_003180360.1 257785143 8414233 1515012..1516937 1 NC_013203.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bsu:BSU15770 protein kinase; serine/threonine protein kinase with PASTA sensor(s) 1516937 8414233 Apar_1345 Atopobium parvulum DSM 20469 serine/threonine protein kinase with PASTA sensor(s) YP_003180360.1 1515012 D 521095 CDS YP_003180361.1 257785144 8414235 complement(1517703..1518326) 1 NC_013203.1 hypothetical protein 1518326 8414235 Apar_1346 Atopobium parvulum DSM 20469 hypothetical protein YP_003180361.1 1517703 R 521095 CDS YP_003180362.1 257785145 8414236 complement(1518313..1519209) 1 NC_013203.1 KEGG: dds:Ddes_1050 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1519209 8414236 Apar_1347 Atopobium parvulum DSM 20469 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_003180362.1 1518313 R 521095 CDS YP_003180363.1 257785146 8414237 complement(1519285..1520790) 1 NC_013203.1 KEGG: gbm:Gbem_2673 heavy metal sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; histidine kinase 1520790 8414237 Apar_1348 Atopobium parvulum DSM 20469 histidine kinase YP_003180363.1 1519285 R 521095 CDS YP_003180364.1 257785147 8414238 complement(1520802..1521515) 1 NC_013203.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gsu:GSU2145 DNA-binding response regulator; winged helix family two component transcriptional regulator 1521515 8414238 Apar_1349 Atopobium parvulum DSM 20469 winged helix family two component transcriptional regulator YP_003180364.1 1520802 R 521095 CDS YP_003180365.1 257785148 8414239 complement(1521616..1522827) 1 NC_013203.1 hypothetical protein 1522827 8414239 Apar_1350 Atopobium parvulum DSM 20469 hypothetical protein YP_003180365.1 1521616 R 521095 CDS YP_003180366.1 257785149 8414240 complement(1522831..1524177) 1 NC_013203.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: glo:Glov_2695 adenylosuccinate lyase; adenylosuccinate lyase 1524177 8414240 Apar_1351 Atopobium parvulum DSM 20469 adenylosuccinate lyase YP_003180366.1 1522831 R 521095 CDS YP_003180367.1 257785150 8414242 complement(1524370..1525632) 1 NC_013203.1 PFAM: peptidase M29 aminopeptidase II; KEGG: bsu:BSU14450 aminopeptidase; peptidase M29 aminopeptidase II 1525632 8414242 Apar_1352 Atopobium parvulum DSM 20469 peptidase M29 aminopeptidase II YP_003180367.1 1524370 R 521095 CDS YP_003180368.1 257785151 8414244 1526096..1526305 1 NC_013203.1 hypothetical protein 1526305 8414244 Apar_1353 Atopobium parvulum DSM 20469 hypothetical protein YP_003180368.1 1526096 D 521095 CDS YP_003180369.1 257785152 8414245 complement(1526362..1526763) 1 NC_013203.1 PFAM: ferric-uptake regulator; KEGG: dvm:DvMF_2366 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 1526763 8414245 Apar_1354 Atopobium parvulum DSM 20469 Fur family ferric uptake regulator YP_003180369.1 1526362 R 521095 CDS YP_003180370.1 257785153 8414246 1526910..1529165 1 NC_013203.1 PFAM: Cna B domain protein; KEGG: bce:BC3526 collagen adhesion protein; Cna B domain-containing protein 1529165 8414246 Apar_1355 Atopobium parvulum DSM 20469 Cna B domain-containing protein YP_003180370.1 1526910 D 521095 CDS YP_003180371.1 257785154 8414247 complement(1529252..1531177) 1 NC_013203.1 KEGG: ACRC; acidic repeat containing; hypothetical protein 1531177 8414247 Apar_1356 Atopobium parvulum DSM 20469 hypothetical protein YP_003180371.1 1529252 R 521095 CDS YP_003180372.1 257785155 8414248 1531367..1532347 1 NC_013203.1 KEGG: mxa:MXAN_1359 hypothetical protein; transcriptional regulator protein-like protein 1532347 8414248 Apar_1357 Atopobium parvulum DSM 20469 transcriptional regulator protein-like protein YP_003180372.1 1531367 D 521095 CDS YP_003180373.1 257785156 8414249 1532337..1533326 1 NC_013203.1 hypothetical protein 1533326 8414249 Apar_1358 Atopobium parvulum DSM 20469 hypothetical protein YP_003180373.1 1532337 D 521095 CDS YP_003180374.1 257785157 8414250 complement(1533427..1536363) 1 NC_013203.1 KEGG: bha:BH1691 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; helicase c2; DNA polymerase III subunit epsilon 1536363 8414250 Apar_1359 Atopobium parvulum DSM 20469 DNA polymerase III subunit epsilon YP_003180374.1 1533427 R 521095 CDS YP_003180375.1 257785158 8414251 complement(1536456..1537415) 1 NC_013203.1 KEGG: sfu:Sfum_4102 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP- grasp; RimK domain protein ATP-grasp; phosphoribosylglycinamide synthetase; D-alanine--D-alanine ligase 1537415 8414251 Apar_1360 Atopobium parvulum DSM 20469 D-alanine--D-alanine ligase YP_003180375.1 1536456 R 521095 CDS YP_003180376.1 257785159 8414252 1537515..1538633 1 NC_013203.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: bsu:BSU15750 hypothetical protein; radical SAM enzyme, Cfr family 1538633 8414252 Apar_1361 Atopobium parvulum DSM 20469 radical SAM enzyme, Cfr family YP_003180376.1 1537515 D 521095 CDS YP_003180377.1 257785160 8414253 complement(1538961..1539821) 1 NC_013203.1 KEGG: gur:Gura_4257 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 1539821 8414253 Apar_1362 Atopobium parvulum DSM 20469 parB-like partition protein YP_003180377.1 1538961 R 521095 CDS YP_003180378.1 257785161 8414254 complement(1539814..1540614) 1 NC_013203.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bsu:BSU40970 chromosome partitioning protein; transcriptional regulator; Cobyrinic acid ac-diamide synthase 1540614 8414254 Apar_1363 Atopobium parvulum DSM 20469 Cobyrinic acid ac-diamide synthase YP_003180378.1 1539814 R 521095 CDS YP_003180379.1 257785162 8414255 complement(1540679..1541437) 1 NC_013203.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: bcb:BCB4264_A5609 16S rRNA methyltransferase GidB; methyltransferase GidB 1541437 8414255 Apar_1364 Atopobium parvulum DSM 20469 methyltransferase GidB YP_003180379.1 1540679 R 521095 CDS YP_003180380.1 257785163 8414256 complement(1541541..1542125) 1 NC_013203.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain-containing protein; single-stranded nucleic acid binding R3H domain-containing protein 1542125 8414256 Apar_1365 Atopobium parvulum DSM 20469 single-stranded nucleic acid binding R3H domain-containing protein YP_003180380.1 1541541 R 521095 CDS YP_003180381.1 257785164 8414257 complement(1542210..1542968) 1 NC_013203.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: cja:CJA_3823 inner membrane protein, 60 kDa; 60 kDa inner membrane insertion protein 1542968 8414257 Apar_1366 Atopobium parvulum DSM 20469 60 kDa inner membrane insertion protein YP_003180381.1 1542210 R 521095 CDS YP_003180382.1 257785165 8414258 complement(1542989..1543225) 1 NC_013203.1 PFAM: protein of unknown function DUF37; KEGG: mgm:Mmc1_3758 protein of unknown function DUF37; hypothetical protein 1543225 8414258 Apar_1367 Atopobium parvulum DSM 20469 hypothetical protein YP_003180382.1 1542989 R 521095 CDS YP_003180383.1 257785166 8414259 complement(1543222..1543545) 1 NC_013203.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: gdi:GDI2137 ribonuclease P protein component; ribonuclease P protein component 1543545 8414259 Apar_1368 Atopobium parvulum DSM 20469 ribonuclease P protein component YP_003180383.1 1543222 R 521095 CDS YP_003180384.1 257785167 8414260 complement(1543557..1543691) 1 NC_013203.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: cbg:CbuG_0026 LSU ribosomal protein L34P; 50S ribosomal protein L34 1543691 8414260 Apar_1369 Atopobium parvulum DSM 20469 50S ribosomal protein L34 YP_003180384.1 1543557 R 521095 CDS