-- dump date 20140618_205314 -- class Genbank::CDS -- table cds_note -- id note YP_002477705.1 KEGG: art:Arth_3018 thymidylate synthase; PFAM: thymidylate synthase; KEGG: pna:Pnap_2772 thymidylate synthase YP_002477708.1 KEGG: art:Arth_2005 GatB/YqeY domain protein YP_002477710.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: kra:Krad_4625 cell divisionFtsK/SpoIIIE YP_002477713.1 PFAM: dihydrofolate reductase region; KEGG: aau:AAur_2993 dihydrofolate reductase YP_002477714.1 PFAM: peptidase M50; KEGG: noc:Noc_1011 peptidase M50 YP_002477716.1 KEGG: met:M446_0393 ribonuclease YP_002477717.1 KEGG: sde:Sde_0097 hypothetical protein YP_002477720.1 KEGG: mgi:Mflv_5450 hypothetical protein YP_002477721.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: art:Arth_2090 preprotein translocase subunit SecG YP_002477722.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: krh:KRH_06350 preprotein translocase SecY subunit YP_002477725.1 KEGG: ENSORLG00000010066. YP_002477727.1 KEGG: aau:AAur_1049 hypothetical protein YP_002477730.1 PFAM: NUDIX hydrolase; KEGG: mgi:Mflv_2174 NUDIX hydrolase YP_002477735.1 KEGG: GF22622 gene product from transcript GF22622-RA YP_002477739.1 KEGG: mav:MAV_1446 NUDIX hydrolase YP_002477743.1 KEGG: aau:AAur_0127 hypothetical protein YP_002477744.1 KEGG: art:Arth_0632 hypothetical protein YP_002477746.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: rha:RHA1_ro07268 hypothetical protein YP_002477749.1 KEGG: art:Arth_2056 hypothetical protein YP_002477750.1 KEGG: cgt:cgR_2576 hypothetical protein YP_002477753.1 KEGG: fre:Franean1_5018 hypothetical protein YP_002477756.1 KEGG: art:Arth_4161 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002477757.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: cms:CMS_2768 hypothetical protein YP_002477758.1 KEGG: GG19635 gene product from transcript GG19635-RA YP_002477760.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_0289 short-chain dehydrogenase/reductase SDR YP_002477761.1 PFAM: ribonuclease H; KEGG: nfa:nfa56240 putative RNase HI YP_002477762.1 KEGG: dsy:DSY4458 hypothetical protein YP_002477764.1 KEGG: fre:Franean1_1245 putative lysyl tRNA synthetase-like protein YP_002477766.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_3473 ABC transporter related YP_002477767.1 KEGG: art:Arth_3474 ATP-dependent Na+ efflux pump YP_002477770.1 KEGG: Hcls1; hematopoietic cell specific Lyn substrate 1 ; K06106 cortactin YP_002477774.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: krh:KRH_05830 preprotein translocase SecE subunit YP_002477776.1 PFAM: protein of unknown function DUF1112; KEGG: aau:AAur_1277 putative integral membrane protein YP_002477781.1 KEGG: mrd:Mrad2831_5747 hypothetical protein YP_002477783.1 KEGG: aau:AAur_1782 putative deoxyuridine 5'-triphosphate nucleotidohydrolase (dut); TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_002477785.1 KEGG: cmi:CMM_2676 putative beta-lactamase YP_002477790.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: rca:Rcas_4118 polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_002477791.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: art:Arth_0472 cold-shock DNA-binding protein family YP_002477792.1 KEGG: art:Arth_0691 hypothetical protein YP_002477796.1 KEGG: nfa:nfa39460 hypothetical protein YP_002477798.1 KEGG: art:Arth_2158 hypothetical protein YP_002477801.1 KEGG: fre:Franean1_0075 hypothetical protein YP_002477802.1 TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24 and S26 domain protein; KEGG: cms:CMS_0999 putative signal peptidase YP_002477803.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aau:AAur_4175 putative ABC transporter, ATP-binding protein YP_002477804.1 KEGG: aau:AAur_4174 putative ABC transporter transmembrane protein YP_002477805.1 KEGG: fgenesh1_pg.C_scaffold_3000652. YP_002477806.1 PFAM: LGFP repeat protein; KEGG: kra:Krad_0967 SCP-like extracellular protein YP_002477808.1 KEGG: hypothetical protein YP_002477810.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: slo:Shew_1260 DNA methylase N-4/N-6 domain-containing protein YP_002477812.1 PFAM: type III restriction protein res subunit; KEGG: har:HEAR0698 hypothetical protein YP_002477813.1 KEGG: mkm:Mkms_1439 hypothetical protein YP_002477815.1 KEGG: art:Arth_0997 GCN5-related N-acetyltransferase YP_002477816.1 KEGG: aau:AAur_3195 putative lipoprotein YP_002477817.1 KEGG: cmi:CMM_2206 hypothetical protein YP_002477818.1 KEGG: art:Arth_0064 hypothetical protein YP_002477823.1 KEGG: art:Arth_2160 hypothetical protein YP_002477824.1 KEGG: aau:AAur_1137 hypothetical protein YP_002477826.1 KEGG: mth:MTH1161 tetrahydromethanopterin S-methyltransferase subunit C YP_002477827.1 KEGG: aau:AAur_1108 hypothetical protein YP_002477829.1 TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: aau:AAur_1896 death-on-curing protein YP_002477830.1 KEGG: mkm:Mkms_1439 hypothetical protein YP_002477831.1 KEGG: GH17936 gene product from transcript GH17936-RA YP_002477832.1 KEGG: gvi:glr3897 hypothetical protein YP_002477834.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: art:Arth_1555 peptidoglycan-binding LysM YP_002477835.1 PFAM: TM2 domain containing protein; KEGG: aau:AAur_2767 TM2 domain-contain protein YP_002477840.1 PFAM: PspA/IM30 family protein; KEGG: art:Arth_2745 phage shock protein A, PspA YP_002477843.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: scl:sce4785 hypothetical protein YP_002477846.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cmi:CMM_2224 hypothetical protein YP_002477848.1 KEGG: aau:AAur_1049 hypothetical protein YP_002477849.1 KEGG: mjl:Mjls_2257 hypothetical protein YP_002477854.1 KEGG: fre:Franean1_6747 hypothetical protein YP_002477856.1 KEGG: lin:lin2560 hypothetical protein YP_002477870.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; KEGG: lxx:Lxx21230 LuxR family transcriptional regulator YP_002477871.1 KEGG: bvi:Bcep1808_7668 hypothetical protein YP_002477872.1 KEGG: ace:Acel_0487 hypothetical protein YP_002477873.1 KEGG: sen:SACE_1270 hypothetical protein YP_002477874.1 KEGG: hwa:HQ2949A ATP-binding protein Mrp YP_002477878.1 KEGG: art:Arth_0057 hypothetical protein YP_002477880.1 KEGG: aau:AAur_0940 putative integral membrane protein YP_002477882.1 PFAM: protein of unknown function DUF805; KEGG: aau:AAur_0967 putative protein of unknown function (DUF805) YP_002477884.1 KEGG: rha:RHA1_ro10088 hypothetical protein YP_002477885.1 KEGG: mgi:Mflv_0802 hypothetical protein YP_002477888.1 PFAM: VWA containing CoxE family protein; KEGG: mgi:Mflv_5421 hypothetical protein YP_002477890.1 PFAM: ribonuclease H; KEGG: ppd:Ppro_0949 ribonuclease H YP_002477891.1 KEGG: lxx:Lxx06610 hypothetical protein YP_002477892.1 KEGG: rfr:Rfer_0327 lytic murein transglycosylase YP_002477893.1 KEGG: bac:BamMC406_6709 hypothetical protein YP_002477894.1 KEGG: art:Arth_0990 hypothetical protein YP_002477896.1 PFAM: Resolvase domain; KEGG: aau:AAur_pTC20008 resolvase family site-specific recombinase YP_002477897.1 PFAM: NERD domain protein; KEGG: nca:Noca_3808 hypothetical protein YP_002477902.1 KEGG: mgi:Mflv_5422 ATPase YP_002477904.1 KEGG: art:Arth_4231 hypothetical protein YP_002477907.1 KEGG: cgb:cg1991 putative GP52-bacterophage PHIC31 YP_002477909.1 KEGG: nmr:Nmar_1073 fibronectin type III domain-containing protein YP_002477910.1 KEGG: rca:Rcas_0264 regulator of chromosome condensation RCC1 YP_002477912.1 KEGG: syn:sll1694 cyanobacterial pilin YP_002477913.1 KEGG: fal:FRAAL3328 hypothetical protein YP_002477914.1 KEGG: sth:STH1951 type IV prepilin-like leader peptide processing enzyme YP_002477915.1 PFAM: type II secretion system protein; KEGG: pmt:PMT0018 pili biogenesis protein YP_002477916.1 PFAM: type II secretion system protein E; KEGG: mxa:MXAN_6705 twitching motility protein YP_002477917.1 PFAM: type II secretion system protein E; KEGG: gka:GK2629 ATPase involved in pili biogenesis YP_002477919.1 KEGG: aau:AAur_3633 putative integral membrane protein YP_002477926.1 PFAM: peptidase A24A prepilin type IV; KEGG: ace:Acel_1314 peptidase A24A domain protein YP_002477927.1 KEGG: scl:sce4587 protein kinase YP_002477928.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: drm:Dred_1035 twitching motility protein YP_002477929.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: ace:Acel_1322 type II secretion system protein E YP_002477930.1 KEGG: ace:Acel_1313 type IV pilus assembly protein PilM YP_002477931.1 KEGG: nca:Noca_1132 fimbrial assembly family protein YP_002477932.1 KEGG: ace:Acel_1311 hypothetical protein YP_002477933.1 KEGG: similar to regenerating islet-derived 1 alpha (pancreatic stone protein, pancreatic thread protein) YP_002477934.1 KEGG: N4BP2L2; NEDD4 binding protein 2-like 2 YP_002477935.1 PFAM: type II secretion system protein; KEGG: ace:Acel_1320 type II secretion system protein YP_002477936.1 KEGG: har:HEAR3117 putative type 4 fimbrial biogenesis transmembrane protein YP_002477937.1 KEGG: hit:NTHI0409 type IV pilin subunit protein YP_002477939.1 PFAM: LGFP repeat protein; KEGG: art:Arth_2337 polysaccharide deacetylase YP_002477940.1 KEGG: bcj:BCAS0321 hypothetical glycine-rich autotransporter protein YP_002477941.1 PFAM: Fibronectin type III domain protein; KEGG: LOC798921; hypothetical LOC798921 YP_002477943.1 KEGG: GD24654 gene product from transcript GD24654-RA YP_002477944.1 KEGG: hypothetical protein YP_002477945.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: cte:CT1787 FtsK/SpoIIIE family protein YP_002477947.1 KEGG: art:Arth_0240 hypothetical protein YP_002477949.1 PFAM: protein of unknown function DUF159; KEGG: art:Arth_4324 protein of unknown function DUF159 YP_002477950.1 KEGG: art:Arth_3532 hypothetical protein YP_002477953.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: sco:SCO6844 DNA methylase YP_002477954.1 KEGG: art:Arth_4516 hypothetical protein YP_002477955.1 KEGG: art:Arth_4517 hypothetical protein YP_002477958.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: kra:Krad_4710 cobyrinic acid ac-diamide synthase YP_002477959.1 KEGG: hypothetical protein YP_002477960.1 KEGG: art:Arth_4230 hypothetical protein YP_002477961.1 KEGG: GG12647 gene product from transcript GG12647-RA YP_002477963.1 PFAM: metallophosphoesterase; KEGG: nfa:nfa39560 hypothetical protein YP_002477967.1 KEGG: aau:AAur_0127 hypothetical protein YP_002477971.1 KEGG: GF25289 gene product from transcript GF25289-RA YP_002477972.1 KEGG: bmv:BMASAVP1_A0555 citrate synthase family protein YP_002477975.1 KEGG: art:Arth_4515 hypothetical protein YP_002477976.1 KEGG: art:Arth_4513 hypothetical protein YP_002477977.1 KEGG: stp:Strop_4198 hypothetical protein YP_002477978.1 KEGG: lxx:Lxx08840 hypothetical protein YP_002477979.1 KEGG: stp:Strop_4198 hypothetical protein YP_002477980.1 KEGG: art:Arth_4512 hypothetical protein YP_002477982.1 KEGG: dol:Dole_3150 hypothetical protein YP_002477984.1 KEGG: nha:Nham_4479 hypothetical protein YP_002477985.1 KEGG: rfe:RF_0693 cell surface antigen Sca3 YP_002477989.1 PFAM: 5 nucleotidase deoxy cytosolic type C; KEGG: hypothetical protein YP_002477993.1 KEGG: tfu:Tfu_1419 hypothetical protein YP_002477994.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: art:Arth_1246 membrane-bound metal-dependent hydrolase YP_002477996.1 KEGG: art:Arth_4435 hypothetical protein YP_002477997.1 KEGG: art:Arth_4434 hypothetical protein YP_002477999.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: amt:Amet_2662 cell division protein FtsK/SpoIIIE YP_002478000.1 PFAM: NERD domain protein; KEGG: aau:AAur_0786 hypothetical protein YP_002478002.1 KEGG: ote:Oter_1025 hypothetical protein YP_002478005.1 KEGG: LOC100075123; similar to splicing coactivator subunit SRm300 YP_002478008.1 PFAM: Clp domain protein; KEGG: cur:cu1684 ATP-dependent Clp protease YP_002478009.1 PFAM: Clp domain protein; KEGG: pac:PPA0278 Clp family ATP-binding protease YP_002478011.1 PFAM: Clp domain protein; KEGG: krh:KRH_19150 ATP-dependent Clp protease ATP-binding subunit ClpC YP_002478013.1 PFAM: Clp domain protein; KEGG: aau:AAur_0167 putative ATP-dependent Clp protease, ATP-binding subunit YP_002478022.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pac:PPA1950 deoxycytidylate deaminase YP_002478027.1 KEGG: afw:Anae109_2979 hypothetical protein YP_002478029.1 KEGG: mkm:Mkms_5555 hypothetical protein YP_002478037.1 PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: art:Arth_0308 kojibiose phosphorylase YP_002478038.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: art:Arth_0307 beta-phosphoglucomutase family hydrolase YP_002478041.1 KEGG: hypothetical protein, unknown function YP_002478045.1 KEGG: mmi:MMAR_3919 hypothetical protein YP_002478051.1 PFAM: ATP dependent DNA ligase; KEGG: nca:Noca_2271 ATP dependent DNA ligase YP_002478052.1 KEGG: art:Arth_4399 hypothetical protein YP_002478055.1 KEGG: gdi:GDI3348 putative peptidase protein YP_002478056.1 KEGG: Os08g0155700; hypothetical protein YP_002478057.1 KEGG: nfa:nfa40360 hypothetical protein YP_002478066.1 KEGG: GF15813 gene product from transcript GF15813-RA YP_002478075.1 PFAM: helicase-associated; KEGG: mkm:Mkms_5505 helicase-associated YP_002478080.1 KEGG: art:Arth_3861 hypothetical protein YP_002478082.1 PFAM: helicase-associated; KEGG: mkm:Mkms_5505 helicase-associated YP_002478083.1 KEGG: sgr:SGR_4261 hypothetical protein YP_002478088.1 PFAM: peptidase S24 and S26 domain protein; KEGG: aau:AAur_1367 putative SOS mutagenesis protein UmuD YP_002478089.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: art:Arth_3841 DNA-directed DNA polymerase YP_002478092.1 KEGG: art:Arth_2159 hypothetical protein YP_002478095.1 KEGG: cur:cu1393 putative oligoribonuclease YP_002478098.1 KEGG: mac:MA3844 hypothetical protein YP_002478109.1 KEGG: hypothetical protein YP_002478112.1 KEGG: gvi:glr3897 hypothetical protein YP_002478114.1 KEGG: bpt:ig_0609 hypothetical protein YP_002478116.1 KEGG: hypothetical protein ; K03497 chromosome partitioning protein, ParB family YP_002478120.1 KEGG: sde:Sde_0560 putative pullulanase precursor YP_002478122.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: dra:DR_A0131 hypothetical protein YP_002478123.1 KEGG: sgr:SGR_1137 putative NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase YP_002478126.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: aau:AAur_1616 putative cation efflux family protein YP_002478139.1 PFAM: metallophosphoesterase; KEGG: mpa:MAP0859c hypothetical protein YP_002478141.1 KEGG: art:Arth_1017 hypothetical protein YP_002478145.1 KEGG: kra:Krad_1764 hypothetical protein YP_002478149.1 KEGG: GH10507 gene product from transcript GH10507-RA ; K01527 nascent polypeptide-associated complex subunit beta YP_002478150.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PASTA domain containing protein; KEGG: ace:Acel_2004 glycosyl transferase, family 51 YP_002478151.1 KEGG: mac:MA2013 sensory transduction histidine kinase YP_002478152.1 PFAM: beta-lactamase domain protein; KEGG: aau:AAur_1405 metallo-beta-lactamase superfamily protein YP_002478157.1 PFAM: protein of unknown function UPF0099; KEGG: sgr:SGR_1465 hypothetical protein YP_002478158.1 KEGG: sen:SACE_1716 hypothetical protein YP_002478160.1 KEGG: GF17743 gene product from transcript GF17743-RA YP_002478163.1 KEGG: zmo:ZMO0626 flagellar-specific RNA polymerase sigma factor YP_002478164.1 KEGG: det:DET0886 DNA primase domain-containing protein YP_002478165.1 KEGG: mab:MAB_2155c hypothetical protein YP_002478169.1 KEGG: cdf:CD3338 hypothetical protein YP_002478173.1 SMART: helicase c2; KEGG: pac:PPA1022 putative ATP-dependent helicase YP_002478174.1 KEGG: cjk:jk0476 glutaredoxin-like protein NrdH YP_002478176.1 PFAM: helicase-associated; KEGG: mkm:Mkms_5505 helicase-associated YP_002478177.1 KEGG: art:Arth_0998 helicase-associated YP_002478178.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pgn:PGN_0863 DNA methylase N-4/N-6 YP_002478179.1 KEGG: rba:RB4971 hypothetical protein YP_002478180.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aau:AAur_2120 3-oxoacyl-(acyl-carrier-protein) reductase YP_002478183.1 PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: nmr:Nmar_0726 SNF2-related protein YP_002478184.1 KEGG: Nisch; nischarin YP_002478185.1 KEGG: mgi:Mflv_5450 hypothetical protein YP_002478186.1 KEGG: hypothetical protein ; K05956 YP_002478191.1 KEGG: swi:Swit_3697 P-type conjugative transfer protein TrbL YP_002478193.1 KEGG: GJ19702 gene product from transcript GJ19702-RA ; K01527 nascent polypeptide-associated complex subunit beta YP_002478194.1 PFAM: CHAP domain containing protein; KEGG: aau:AAur_pTC20271 CHAP domain-contain protein YP_002478196.1 KEGG: art:Arth_1061 HNH endonuclease YP_002478197.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mpa:MAP0068 single-strand DNA-binding protein YP_002478199.1 KEGG: pth:PTH_2220 DNA polymerase III DnaE; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_002478201.1 KEGG: tte:TTE1818 DNA polymerase III DnaE; PFAM: PHP domain protein; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_002478205.1 KEGG: sco:SCO5820 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: helicase domain protein; helicase-associated; type III restriction protein res subunit; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; SMART: DEAD-like helicases YP_002478207.1 PFAM: Flp/Fap pilin component; KEGG: bav:BAV2534 pilin subunit YP_002478208.1 PFAM: TadE family protein; KEGG: art:Arth_2921 TadE family protein YP_002478209.1 KEGG: art:Arth_2930 hypothetical protein YP_002478210.1 KEGG: art:Arth_2923 hypothetical protein YP_002478211.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: art:Arth_2924 Flp pilus assembly protein ATPase CpaE-like protein YP_002478212.1 PFAM: type II secretion system protein E; KEGG: art:Arth_2925 type II secretion system protein E YP_002478213.1 PFAM: type II secretion system protein; KEGG: art:Arth_2926 type II secretion system protein YP_002478214.1 PFAM: type II secretion system protein; KEGG: art:Arth_2927 type II secretion system protein YP_002478215.1 PFAM: LGFP repeat protein; KEGG: kra:Krad_0059 LGFP repeat-containing protein YP_002478216.1 KEGG: ccr:CC_0550 hypothetical protein YP_002478217.1 KEGG: dol:Dole_3150 hypothetical protein YP_002478220.1 KEGG: art:Arth_3071 peptidoglycan-binding LysM YP_002478222.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cms:CMS_2411 putative exonuclease YP_002478227.1 TIGRFAM: NrdI protein; PFAM: NrdI family protein; KEGG: rsa:RSal33209_3482 NrdI YP_002478228.1 KEGG: art:Arth_2356 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; Ribonucleotide reductase domain protein YP_002478231.1 KEGG: sml:Smlt1913 hypothetical protein YP_002478233.1 PFAM: ribonucleotide reductase; KEGG: rsa:RSal33209_3484 ribonucleotide-diphosphate reductase subunit beta YP_002478237.1 KEGG: nfa:nfa40160 hypothetical protein YP_002478238.1 KEGG: fjo:Fjoh_4928 metal dependent phosphohydrolase YP_002478239.1 KEGG: art:Arth_0871 beta-mannanase-like protein YP_002478240.1 PFAM: histone family protein DNA-binding protein; KEGG: aau:AAur_3743 DNA-binding protein HU YP_002478242.1 KEGG: GI14195 gene product from transcript GI14195-RA ; K01876 aspartyl-tRNA synthetase YP_002478244.1 PFAM: heat shock protein DnaJ domain protein; KEGG: mms:mma_1947 curved DNA-binding protein YP_002478246.1 PFAM: protein of unknown function UPF0027; KEGG: rha:RHA1_ro06876 hypothetical protein YP_002478247.1 KEGG: hypothetical protein YP_002478248.1 KEGG: sma:SAV_3744 hypothetical protein YP_002478253.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: aau:AAur_3016 Na+/H+ antiporter YP_002478255.1 TIGRFAM: lipoprotein; PFAM: protein of unknown function DUF285 lipoprotein; KEGG: swd:Swoo_3150 lipoprotein YP_002478256.1 KEGG: sgr:SGR_4345 hypothetical protein YP_002478421.1 KEGG: art:Arth_4331 hypothetical protein YP_002478423.1 KEGG: art:Arth_4329 hypothetical protein YP_002478424.1 PFAM: peptidase S24 and S26 domain protein; KEGG: art:Arth_3840 UmuD protein. Serine peptidase. MEROPS family S24 YP_002478425.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: art:Arth_3841 DNA-directed DNA polymerase YP_002478426.1 KEGG: art:Arth_0994 hypothetical protein YP_002478427.1 PFAM: ATP dependent DNA ligase; KEGG: nca:Noca_2271 ATP dependent DNA ligase YP_002478428.1 PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: mjl:Mjls_2251 helicase domain-containing protein YP_002478429.1 KEGG: mjl:Mjls_2250 hypothetical protein YP_002478432.1 KEGG: dol:Dole_3047 hypothetical protein YP_002478433.1 PFAM: Integrase catalytic region; KEGG: mjl:Mjls_3211 integrase catalytic subunit YP_002478434.1 PFAM: transposase IS3/IS911 family protein; KEGG: msm:MSMEG_1250 ISMsm7, transposase orfA YP_002478435.1 KEGG: sma:SAV_3744 hypothetical protein YP_002478436.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: aau:AAur_pTC10240 MerR family transcriptional regulator YP_002478438.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: aau:AAur_pTC10241 mercuric reductase YP_002478439.1 cleaves the carbon-mercury bond of organomercuric compounds YP_002478440.1 KEGG: ace:Acel_0487 hypothetical protein YP_002478441.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rxy:Rxyl_1765 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_002478442.1 KEGG: rxy:Rxyl_1766 hypothetical protein YP_002478443.1 PFAM: glycoside hydrolase 15-related; KEGG: nca:Noca_4178 glycoside hydrolase 15-related YP_002478445.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002478446.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: aau:AAur_pTC10197 cytochrome c biogenesis membrane protein YP_002478447.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: mgi:Mflv_3217 cytochrome c biogenesis protein, transmembrane region YP_002478448.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mgi:Mflv_3216 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_002478449.1 KEGG: mmi:MMAR_p14 mercuric transport protein, MerT YP_002478451.1 KEGG: art:Arth_4456 hypothetical protein YP_002478452.1 PFAM: protein of unknown function DUF305; KEGG: art:Arth_4455 protein of unknown function DUF305 YP_002478453.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rxy:Rxyl_1773 redoxin YP_002478454.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: mgi:Mflv_3217 cytochrome c biogenesis protein, transmembrane region YP_002478455.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: aau:AAur_pTC10240 MerR family transcriptional regulator YP_002478456.1 KEGG: mgi:Mflv_3216 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_002478457.1 KEGG: mmi:MMAR_p14 mercuric transport protein, MerT YP_002478458.1 PFAM: Peptidase M23; KEGG: aau:AAur_pTC20036 M23 peptidase domain-containing protein YP_002478459.1 PFAM: copper resistance D domain protein; KEGG: aau:AAur_pTC10194 copper resistance protein D family YP_002478460.1 KEGG: art:Arth_4442 copper resistance protein CopC YP_002478461.1 KEGG: art:Arth_0628 hypothetical protein YP_002478462.1 PFAM: nuclear export factor GLE1; KEGG: kra:Krad_0320 nuclear export factor GLE1 YP_002478463.1 PFAM: copper resistance protein CopC; KEGG: aau:AAur_0407 copper resistance protein CopC YP_002478464.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: art:Arth_0466 resolvase YP_002478465.1 PFAM: Resolvase domain; KEGG: cgt:cgR_0559 hypothetical protein YP_002478466.1 KEGG: sco:SCO5332 hypothetical protein YP_002478467.1 PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: aau:AAur_pTC20002 putative helicase YP_002478469.1 KEGG: art:Arth_4174 hypothetical protein YP_002478470.1 KEGG: mrd:Mrad2831_2130 hypothetical protein YP_002478471.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aau:AAur_pTC10093 putative Soj/ParA family protein YP_002478472.1 KEGG: art:Arth_4288 hypothetical protein YP_002478474.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_002478476.1 PFAM: regulatory protein ArsR YP_002478477.1 KEGG: aau:AAur_pTC20272 putative regulatory protein YP_002478478.1 PFAM: CHAP domain containing protein; KEGG: aau:AAur_pTC20271 CHAP domain-contain protein YP_002478479.1 KEGG: aau:AAur_pTC20270 hypothetical protein YP_002478480.1 KEGG: art:Arth_4185 hypothetical protein YP_002478481.1 KEGG: aau:AAur_pTC20268 hypothetical protein YP_002478482.1 KEGG: art:Arth_4187 hypothetical protein YP_002478483.1 KEGG: art:Arth_4505 hypothetical protein YP_002478484.1 KEGG: aau:AAur_pTC20265 hypothetical protein YP_002478485.1 KEGG: art:Arth_4503 narrowly conserved hypothetical protein YP_002478486.1 KEGG: art:Arth_4502 hypothetical protein YP_002478487.1 KEGG: aau:AAur_pTC20262 putative TraG-family protein YP_002478488.1 KEGG: art:Arth_4499 hypothetical protein YP_002478489.1 KEGG: krh:KRH_19160 LSR2-like protein YP_002478490.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: art:Arth_1928 transcriptional regulator, AraC family YP_002478491.1 PFAM: monooxygenase FAD-binding; KEGG: mva:Mvan_4406 monooxygenase, FAD-binding YP_002478492.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: art:Arth_1936 iron-containing alcohol dehydrogenase YP_002478493.1 PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: cgb:cg3385 catechol 1,2-dioxygenase YP_002478495.1 KEGG: mrd:Mrad2831_3414 hypothetical protein YP_002478496.1 PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: cgb:cg3385 catechol 1,2-dioxygenase YP_002478497.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rxy:Rxyl_1858 transcriptional regulator, GntR family YP_002478498.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: sth:STH810 transcriptional regulator YP_002478499.1 PFAM: protein of unknown function DUF1486; KEGG: ana:alr3729 unknown protein YP_002478500.1 PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: reu:Reut_A1585 4-hydroxyphenylacetate 3-hydroxylase YP_002478501.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: art:Arth_1936 iron-containing alcohol dehydrogenase YP_002478502.1 PFAM: regulatory protein TetR; KEGG: bja:blr4080 transcriptional regulatory protein YP_002478503.1 PFAM: Beta-ketoacyl synthase; KEGG: sen:SACE_1523 3-oxoacyl-[acyl-carrier-protein] synthase YP_002478504.1 PFAM: regulatory protein TetR; KEGG: lxx:Lxx23120 TetR family transcriptional regulator YP_002478505.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sco:SCO7109 oxidoreductase YP_002478506.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: reh:H16_B1406 predicted nucleoside-diphosphate-sugar epimerase YP_002478507.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sma:SAV_1362 transcriptional regulator YP_002478510.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sma:SAV_1362 transcriptional regulator YP_002478511.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: reh:H16_B1406 predicted nucleoside-diphosphate-sugar epimerase YP_002478512.1 KEGG: sco:SCO7126 hypothetical protein YP_002478513.1 PFAM: FAD synthetase; KEGG: art:Arth_1430 FMN adenylyltransferase / riboflavin kinase YP_002478514.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: art:Arth_3504 transcriptional regulator, AraC family YP_002478515.1 PFAM: monooxygenase FAD-binding; KEGG: btk:BT9727_3271 PheA/TfdB family polyketide hydroxylase YP_002478516.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B4696 glyoxalase/bleomycin resistance protein/dioxygenase YP_002478517.1 PFAM: phospholipase/Carboxylesterase; KEGG: abm:ABSDF1529 putative carboxylesterase YP_002478518.1 PFAM: YceI family protein; KEGG: rsa:RSal33209_2710 hypothetical protein YP_002478519.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: art:Arth_1936 iron-containing alcohol dehydrogenase YP_002478520.1 KEGG: aau:AAur_4039 beta-ketoadipyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_002478521.1 KEGG: art:Arth_4072 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_002478522.1 KEGG: aau:AAur_4037 3-oxoadipate CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_002478523.1 KEGG: lxx:Lxx04120 hypothetical protein YP_002478524.1 KEGG: art:Arth_0240 hypothetical protein YP_002478525.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: aau:AAur_pTC20225 Tn3 family resolvase YP_002478526.1 KEGG: rha:RHA1_ro10083 hypothetical protein YP_002478527.1 PFAM: protein of unknown function DUF955; KEGG: rha:RHA1_ro10082 transcriptional regulator YP_002478528.1 KEGG: art:Arth_0978 hypothetical protein YP_002478529.1 KEGG: art:Arth_0979 hypothetical protein YP_002478530.1 KEGG: aau:AAur_pTC10117 hypothetical protein YP_002478531.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: aau:AAur_pTC20118 hypothetical protein YP_002478532.1 PFAM: PfkB domain protein; KEGG: rsa:RSal33209_0094 fructokinase YP_002478534.1 PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro00821 sugar ABC transporter permease YP_002478535.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ava:Ava_2172 ABC transporter-like YP_002478536.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_1824 periplasmic binding protein/LacI transcriptional regulator YP_002478537.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sma:SAV_5320 LacI family transcriptional regulator YP_002478538.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cms:CMS_0933 LacI family transcriptional regulator YP_002478539.1 PFAM: extracellular solute-binding protein family 1; KEGG: hau:Haur_1243 extracellular solute-binding protein YP_002478540.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hau:Haur_1244 binding-protein-dependent transport systems inner membrane component YP_002478541.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hau:Haur_1245 binding-protein-dependent transport systems inner membrane component YP_002478542.1 KEGG: cbe:Cbei_3498 hypothetical protein YP_002478543.1 PFAM: PfkB domain protein; KEGG: art:Arth_0109 PfkB domain protein YP_002478544.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: cms:CMS_2948 putative secondary metabolism monooxygenase YP_002478545.1 PFAM: phosphofructokinase; KEGG: aau:AAur_2976 6-phosphofructokinase YP_002478547.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV_1477 LacI family transcriptional regulator YP_002478548.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000501 putative sugar ABC transporter, substrate-binding protein YP_002478549.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00302 probable sugar ABC transporter, permease protein YP_002478550.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120681 putative permease component of ABC transporter YP_002478551.1 PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; KEGG: aau:AAur_0947 glycoside hydrolase family protein YP_002478552.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: rha:RHA1_ro01704 hypothetical protein YP_002478553.1 PFAM: protein of unknown function DUF1016; KEGG: aau:AAur_pTC20256 hypothetical protein YP_002478554.1 KEGG: art:Arth_0998 helicase-associated YP_002478555.1 KEGG: art:Arth_4224 hypothetical protein YP_002478556.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: art:Arth_4407 relaxase/mobilization nuclease family protein YP_002478557.1 PFAM: mobilisation protein; KEGG: art:Arth_4226 mobilization protein YP_002478559.1 KEGG: art:Arth_4333 hypothetical protein YP_002478560.1 KEGG: nca:Noca_4756 hypothetical protein YP_002478561.1 KEGG: nca:Noca_4757 hypothetical protein YP_002478562.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: art:Arth_4229 DNA binding domain, excisionase family YP_002478563.1 KEGG: aau:AAur_pTC20074 hypothetical protein YP_002478564.1 KEGG: xac:XACa0042 KfrA protein YP_002478565.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: art:Arth_4119 single-strand binding protein YP_002478566.1 PFAM: glutaredoxin; KEGG: aau:AAur_pTC20071 glutaredoxin YP_002478567.1 KEGG: art:Arth_4399 hypothetical protein YP_002478569.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: art:Arth_4332 ParB family protein YP_002486093.1 KEGG: art:Arth_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: replication initiation factor DnaA; Chromosomal replication initiator DnaA; SMART: ATPase AAA YP_002486094.1 KEGG: art:Arth_0002 DNA polymerase III beta subunit; TIGRFAM: DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain YP_002486095.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_002486096.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002486097.1 PFAM: protein of unknown function DUF721; KEGG: art:Arth_0005 protein of unknown function DUF721 YP_002486098.1 negatively supercoils closed circular double-stranded DNA YP_002486099.1 negatively supercoils closed circular double-stranded DNA YP_002486100.1 KEGG: aau:AAur_0008 integral membrane protein YP_002486101.1 KEGG: aau:AAur_0010 hypothetical protein YP_002486102.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: aau:AAur_0012 integral membrane protein YP_002486103.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_0010 glycosyl transferase, family 2 YP_002486104.1 KEGG: art:Arth_0011 hypothetical protein YP_002486105.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: art:Arth_0012 peptidylprolyl isomerase YP_002486106.1 PFAM: rhomboid family protein; KEGG: art:Arth_0013 rhomboid family protein YP_002486107.1 PFAM: methyladenine glycosylase; KEGG: art:Arth_0014 DNA-3-methyladenine glycosylase I YP_002486108.1 PFAM: protein of unknown function UPF0233; KEGG: art:Arth_0016 protein of unknown function UPF0233 YP_002486109.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: art:Arth_0017 sortase family protein YP_002486110.1 KEGG: art:Arth_0018 hypothetical protein YP_002486111.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; molybdopterin binding domain; KEGG: art:Arth_0019 anthranilate synthase, component II YP_002486112.1 PFAM: tyrosine protein kinase; PASTA domain containing protein; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: art:Arth_0020 serine/threonine protein kinase YP_002486113.1 PFAM: tyrosine protein kinase; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: art:Arth_0021 serine/threonine protein kinase YP_002486114.1 PFAM: penicillin-binding protein transpeptidase; KEGG: art:Arth_0022 peptidoglycan glycosyltransferase YP_002486115.1 PFAM: cell cycle protein; KEGG: art:Arth_0023 cell cycle protein YP_002486116.1 PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: art:Arth_0024 protein serine/threonine phosphatases YP_002486117.1 PFAM: Forkhead-associated protein; KEGG: art:Arth_0025 FHA domain containing protein YP_002486118.1 PFAM: Forkhead-associated protein; KEGG: art:Arth_0026 FHA domain containing protein YP_002486119.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: msm:MSMEG_6126 D-isomer specific 2-hydroxyacid dehydrogenase YP_002486120.1 PFAM: extracellular solute-binding protein family 5; KEGG: mva:Mvan_1024 extracellular solute-binding protein YP_002486121.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rha:RHA1_ro03929 ABC dipeptide transporter permease component YP_002486122.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rha:RHA1_ro03930 ABC dipeptide transporter permease component YP_002486123.1 KEGG: rha:RHA1_ro03931 ABC dipeptide transporter ATP-binding component; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002486124.1 KEGG: rha:RHA1_ro03932 ABC oligopeptide transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002486125.1 PFAM: protein of unknown function DUF81; KEGG: msm:MSMEG_6119 hypothetical protein YP_002486126.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: msm:MSMEG_6115 phosphoglycerate dehydrogenase YP_002486127.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: sen:SACE_4841 mandelate racemase/muconate lactonizing enzyme YP_002486128.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rha:RHA1_ro03793 LysR family transcriptional regulator YP_002486129.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_0031 GntR family transcriptional regulator YP_002486130.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: aau:AAur_0037 mandelate racemase YP_002486131.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: art:Arth_0039 transcriptional regulator YP_002486132.1 PFAM: amine oxidase; HI0933 family protein; FAD dependent oxidoreductase; KEGG: art:Arth_0040 putrescine oxidase YP_002486133.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: aau:AAur_2021 general stress protein YP_002486134.1 PFAM: protein of unknown function DUF1348; KEGG: aau:AAur_0438 protein of unknown function (DUF1348) YP_002486135.1 PFAM: regulatory protein TetR; KEGG: aau:AAur_0437 TetR family transcriptional regulator YP_002486136.1 KEGG: art:Arth_0044 hypothetical protein YP_002486137.1 KEGG: art:Arth_0045 hypothetical protein YP_002486138.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aau:AAur_0047 glyoxalase family protein YP_002486139.1 KEGG: art:Arth_0058 hypothetical protein YP_002486140.1 PFAM: LysR substrate-binding; KEGG: art:Arth_0059 LysR family transcriptional regulator YP_002486142.1 KEGG: art:Arth_0346 hypothetical protein YP_002486143.1 PFAM: protein of unknown function DUF1469; KEGG: art:Arth_0347 protein of unknown function DUF1469 YP_002486144.1 KEGG: art:Arth_0348 hypothetical protein YP_002486145.1 PFAM: regulatory protein MarR; KEGG: art:Arth_2545 MarR family transcriptional regulator YP_002486146.1 KEGG: aau:AAur_0312 lipoprotein YP_002486147.1 PFAM: FAD linked oxidase; D-arabinono-14-lactone oxidase; KEGG: aau:AAur_0055 xylitol oxidase YP_002486148.1 KEGG: kra:Krad_3464 alpha-galactosidase YP_002486149.1 PFAM: pentapeptide repeat protein; KEGG: aau:AAur_1319 pentapeptide repeat-containing protein YP_002486150.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_002486151.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: kra:Krad_0833 agmatine deiminase YP_002486152.1 KEGG: aau:AAur_3919 esterase/lipase YP_002486153.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: art:Arth_2843 ribosome small subunit-dependent GTPase A YP_002486154.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: art:Arth_3663 protein of unknown function DUF21 YP_002486155.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: art:Arth_3662 protein of unknown function DUF21 YP_002486156.1 KEGG: art:Arth_3176 hypothetical protein YP_002486157.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: art:Arth_0476 diguanylate cyclase YP_002486158.1 PFAM: oxidoreductase; oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: aau:AAur_1535 oxidoreductase family protein YP_002486159.1 KEGG: art:Arth_0085 hypothetical protein YP_002486160.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: art:Arth_0087 oxidoreductase YP_002486161.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: aau:AAur_1542 LacI family transcriptional regulator YP_002486163.1 KEGG: aau:AAur_0272 lipoprotein YP_002486164.1 PFAM: xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: yen:YE0973 membrane transporter YP_002486165.1 PFAM: regulatory protein MerR; KEGG: cmi:CMM_2956 hypothetical protein YP_002486166.1 KEGG: aau:AAur_0326 integral membrane protein YP_002486167.1 KEGG: aau:AAur_0327 integral membrane protein YP_002486168.1 KEGG: aau:AAur_0325 integral membrane protein YP_002486169.1 KEGG: art:Arth_3486 hypothetical protein YP_002486170.1 PFAM: aldehyde dehydrogenase; KEGG: aau:AAur_pTC20095 succinate-semialdehyde dehydrogenase YP_002486171.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: sen:SACE_4607 glycine betaine transporter YP_002486172.1 PFAM: flavin reductase domain protein FMN-binding; protein of unknown function DUF1486; KEGG: sil:SPO2711 CaiB/BaiF family protein YP_002486173.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: glo:Glov_0874 GntR family transcriptional regulator YP_002486174.1 PFAM: protein of unknown function DUF1185; KEGG: bam:Bamb_4326 hypothetical protein YP_002486175.1 PFAM: protein of unknown function DUF1185; KEGG: pen:PSEEN2034 hypothetical protein YP_002486176.1 PFAM: alpha/beta hydrolase fold; KEGG: pfo:Pfl01_3232 3-oxoadipate enol-lactonase YP_002486177.1 PFAM: aldehyde dehydrogenase; KEGG: psp:PSPPH_2565 aldehyde dehydrogenase family protein YP_002486178.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: rha:RHA1_ro03879 4-oxalocrotonate tautomerase YP_002486179.1 PFAM: Luciferase-like monooxygenase; KEGG: pfo:Pfl01_3263 luciferase-like YP_002486180.1 PFAM: aminotransferase class I and II; KEGG: aau:AAur_1949 aspartate aminotransferase YP_002486181.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: aau:AAur_1948 D-isomer specific 2-hydroxyacid dehydrogenases family protein YP_002486182.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sme:SMa1939 hypothetical protein YP_002486183.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: sgr:SGR_353 IclR family transcriptional regulator YP_002486184.1 KEGG: msm:MSMEG_0123 hypothetical protein YP_002486185.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: sth:STH2229 hypothetical protein YP_002486186.1 PFAM: conserved hypothetical protein; KEGG: nth:Nther_1958 hypothetical protein YP_002486187.1 PFAM: dimethylmenaquinone methyltransferase; KEGG: sco:SCO5940 hypothetical protein YP_002486188.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; phosphogluconate dehydrogenase, NAD-binding, -like; KEGG: rxy:Rxyl_0198 6-phosphogluconate dehydrogenase, NAD-binding protein YP_002486189.1 PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: bpu:BPUM_3411 TRAP-T family tripartite ATP-independent periplasmic membrane protein YP_002486190.1 KEGG: bcl:ABC3760 hypothetical protein YP_002486191.1 KEGG: rha:RHA1_ro06956 hypothetical protein YP_002486192.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sen:SACE_3696 EamA family protein YP_002486193.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sen:SACE_3695 LysR family transcriptional regulator YP_002486194.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_0583 major facilitator transporter YP_002486195.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_1988 GntR family transcriptional regulator YP_002486196.1 PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_3570 transmembrane efflux protein (MFS) YP_002486197.1 KEGG: aau:AAur_1199 hypothetical protein YP_002486198.1 KEGG: aau:AAur_3460 hypothetical protein YP_002486199.1 KEGG: cdf:CD2228 hypothetical protein YP_002486200.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2199 ABC transporter YP_002486201.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mva:Mvan_3007 glyoxalase/bleomycin resistance protein/dioxygenase YP_002486202.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: nfa:nfa43930 transcriptional regulator YP_002486203.1 KEGG: art:Arth_3620 hypothetical protein YP_002486204.1 PFAM: oxidoreductase; CoA-binding domain protein; oxidoreductase domain; KEGG: aau:AAur_1984 oxidoreductase family protein YP_002486205.1 KEGG: aau:AAur_1988 ABC-type sugar transport system YP_002486206.1 PFAM: inner-membrane translocator; KEGG: aau:AAur_1989 sugar ABC-type transporters, permeases YP_002486207.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_1990 ABC sugar transport, ATP binding protein YP_002486208.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: aau:AAur_1987 LacI family transcriptional regulator YP_002486209.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: aau:AAur_1986 oxidoreductase family protein YP_002486210.1 KEGG: art:Arth_0827 sugar transporter; TIGRFAM: sugar transporter; PFAM: general substrate transporter; major facilitator superfamily MFS_1 YP_002486211.1 PFAM: xylose isomerase; KEGG: aau:AAur_1985 suger phosphate isomerases/epimerase YP_002486212.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: cmi:CMM_0793 myo-inositol dehydrogenase YP_002486213.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002486214.1 PFAM: protein of unknown function DUF299; KEGG: pau:PA14_41680 hypothetical protein YP_002486215.1 PFAM: hypothetical protein; KEGG: ote:Oter_3370 TPR repeat-containing protein YP_002486216.1 KEGG: pdi:BDI_3295 hypothetical protein YP_002486217.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: msm:MSMEG_3998 MmsAB operon regulatory protein YP_002486218.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: art:Arth_2228 cell envelope-related transcriptional attenuator YP_002486219.1 KEGG: aau:AAur_0400 hypothetical protein YP_002486220.1 KEGG: art:Arth_0629 hypothetical protein YP_002486221.1 PFAM: regulatory protein TetR; KEGG: eca:ECA2069 TetR family transcriptional regulator YP_002486223.1 PFAM: helix-turn-helix Fis-type; KEGG: rha:RHA1_ro11054 transcriptional regulator YP_002486224.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; alanine dehydrogenase/PNT domain protein; KEGG: yps:YPTB1320 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_002486225.1 PFAM: aminotransferase class-III; KEGG: rpd:RPD_2366 aminotransferase class-III YP_002486226.1 PFAM: fumarylacetoacetate hydrolase; KEGG: bha:BH2000 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_002486227.1 PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: pde:Pden_0472 5-oxoprolinase (ATP-hydrolyzing) YP_002486228.1 PFAM: hydantoinase B/oxoprolinase; KEGG: pde:Pden_0473 hydantoinase B/oxoprolinase YP_002486229.1 PFAM: oxidoreductase; homoserine dehydrogenase NAD-binding; KEGG: rrs:RoseRS_3454 oxidoreductase domain-containing protein YP_002486230.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sen:SACE_5186 thiamine pyrophosphate-requiring enzyme YP_002486231.1 PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro00587 succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_002486232.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002486233.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: pac:PPA0466 myo-inositol 2-dehydrogenase YP_002486234.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bcs:BCAN_A1141 bacilysin biosynthesis oxidoreductase BacC YP_002486235.1 PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: aav:Aave_3759 dihydroxyacid dehydratase YP_002486236.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sen:SACE_3772 D-isomer specific 2-hydroxyacid dehydrogenase YP_002486237.1 PFAM: amino acid permease-associated region; KEGG: rha:RHA1_ro02835 phenylethylamine permease YP_002486238.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: cmi:CMM_0793 myo-inositol dehydrogenase YP_002486239.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rsh:Rsph17029_3423 ABC transporter YP_002486240.1 PFAM: inner-membrane translocator; KEGG: vei:Veis_2045 inner-membrane translocator YP_002486241.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0206 periplasmic sugar-binding proteins YP_002486242.1 PFAM: FAD linked oxidase; KEGG: rha:RHA1_ro01642 FAD binding oxidoreductase YP_002486244.1 KEGG: eca:ECA2069 TetR family transcriptional regulator YP_002486245.1 PFAM: amino acid permease-associated region; KEGG: eca:ECA2068 permease YP_002486246.1 KEGG: aau:AAur_0776 hypothetical protein YP_002486247.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: art:Arth_3731 GAF sensor signal transduction histidine kinase YP_002486248.1 KEGG: bmu:Bmul_0438 ammonium transporter YP_002486249.1 PFAM: peptidase C60 sortase A and B; KEGG: ace:Acel_0348 peptidase C60, sortase A and B YP_002486250.1 KEGG: ace:Acel_0349 hypothetical protein YP_002486251.1 PFAM: beta-Ig-H3/fasciclin; KEGG: art:Arth_2547 beta-Ig-H3/fasciclin YP_002486252.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: aau:AAur_0515 molybdopterin oxidoreductase YP_002486253.1 KEGG: aau:AAur_0361 hypothetical protein YP_002486254.1 KEGG: aau:AAur_pTC10117 hypothetical protein YP_002486255.1 KEGG: mmi:MMAR_0963 hypothetical protein YP_002486256.1 KEGG: slo:Shew_1693 hypothetical protein YP_002486258.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: aau:AAur_pTC20225 Tn3 family resolvase YP_002486259.1 KEGG: art:Arth_0240 hypothetical protein YP_002486260.1 PFAM: peptidase M23; KEGG: aau:AAur_4049 FG-GAP repeat-containing protein YP_002486262.1 KEGG: cmi:CMM_0738 hypothetical protein YP_002486263.1 PFAM: protein of unknown function DUF344; KEGG: aau:AAur_4071 polyphosphate kinase 2 family protein YP_002486264.1 PFAM: aldo/keto reductase; KEGG: rce:RC1_3354 oxidoreductase, aldolase YP_002486265.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: art:Arth_0096 carbamoyl-phosphate synthase L chain, ATP-binding YP_002486266.1 TIGRFAM: urea amidolyase related protein; PFAM: allophanate hydrolase subunit 2; allophanate hydrolase subunit 1; KEGG: art:Arth_0095 UreA amidolyase related protein YP_002486267.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_0052 major facilitator transporter YP_002486268.1 PFAM: LamB/YcsF family protein; KEGG: art:Arth_0093 LamB/YcsF family protein YP_002486269.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_0092 GntR family transcriptional regulator YP_002486270.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: aau:AAur_1110 cytosine deaminase YP_002486271.1 KEGG: bcl:ABC3412 hypothetical protein YP_002486272.1 PFAM: RelA/SpoT domain protein; KEGG: art:Arth_0105 RelA/SpoT domain protein YP_002486273.1 PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: sma:SAV_2764 metallopeptidase YP_002486274.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: art:Arth_0080 transcriptional regulator, LacI family YP_002486276.1 PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: art:Arth_0081 purine nucleosidase YP_002486277.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0082 major facilitator superfamily MFS_1 YP_002486278.1 PFAM: PfkB domain protein; KEGG: art:Arth_0083 PfkB domain protein YP_002486279.1 PFAM: hypothetical protein; KEGG: aau:AAur_4066 integral membrane permease YP_002486280.1 KEGG: sco:SCO5942 hypothetical protein YP_002486281.1 PFAM: gluconate transporter; citrate transporter; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: aau:AAur_4146 gluconate transporter YP_002486282.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: aau:AAur_4147 CaiB/BaiF family acyl-CoA thioesterase YP_002486283.1 PFAM: pyruvate carboxyltransferase; KEGG: aau:AAur_4148 hydroxymethylglutaryl-CoA lyase YP_002486284.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: aau:AAur_4149 glyoxylate reductase YP_002486285.1 PFAM: glycerate kinase; KEGG: aau:AAur_4150 glycerate kinase YP_002486286.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: aau:AAur_4157 IclR family transcriptional regulator YP_002486287.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: aau:AAur_0982 hypothetical protein YP_002486288.1 KEGG: aau:AAur_0060 hypothetical protein YP_002486289.1 PFAM: PfkB domain protein; KEGG: art:Arth_0109 PfkB domain protein YP_002486290.1 PFAM: regulatory protein MarR; KEGG: aau:AAur_pTC20243 MarR family transcriptional regulator YP_002486291.1 KEGG: aau:AAur_3930 hypothetical protein YP_002486292.1 PFAM: protein of unknown function DUF156; KEGG: aau:AAur_pTC10237 hypothetical protein YP_002486293.1 PFAM: rhodanese; KEGG: aau:AAur_pTC10236 rhodanese-like domain-containing protein YP_002486294.1 PFAM: protein of unknown function DUF81; KEGG: aau:AAur_pTC10235 integral membrane protein YP_002486295.1 PFAM: rhodanese; KEGG: aau:AAur_pTC10234 rhodanese-like domain-containing protein YP_002486296.1 PFAM: rhodanese; KEGG: aau:AAur_pTC10233 rhodanese-like domain-containing protein YP_002486297.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: aau:AAur_pTC10232 thioredoxin YP_002486298.1 PFAM: beta-lactamase; Rhodanese domain protein; KEGG: aau:AAur_pTC10230 metallo-beta-lactamase superfamily protein YP_002486299.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3829 major facilitator superfamily MFS_1 YP_002486300.1 KEGG: art:Arth_0688 hypothetical protein YP_002486301.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: art:Arth_1411 protein of unknown function DUF125, transmembrane YP_002486302.1 SMART: peptidase metallopeptidase; KEGG: aau:AAur_1049 hypothetical protein YP_002486303.1 TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; KEGG: art:Arth_3780 NlpA lipoprotein YP_002486304.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: art:Arth_2452 short-chain dehydrogenase/reductase SDR YP_002486305.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: aau:AAur_2423 2-hydroxy-3-oxopropionate reductase YP_002486306.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_2458 major facilitator superfamily MFS_1 YP_002486307.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_2459 IclR family transcripitonal regulator YP_002486308.1 PFAM: fumarylacetoacetate hydrolase; KEGG: art:Arth_2555 fumarylacetoacetate hydrolase YP_002486309.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: art:Arth_2454 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_002486310.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: art:Arth_3841 DNA-directed DNA polymerase YP_002486311.1 PFAM: peptidase S24 and S26 domain protein; KEGG: art:Arth_3840 UmuD protein. serine peptidase. MEROPS family S24 YP_002486312.1 PFAM: regulatory protein ArsR; KEGG: rha:RHA1_ro03367 ArsR family transcriptional regulator YP_002486313.1 PFAM: major intrinsic protein; KEGG: stp:Strop_0634 low molecular weight phosphotyrosine protein phosphatase YP_002486314.1 PFAM: protein-tyrosine phosphatase, low molecular weight; KEGG: aau:AAur_pTC20058 arsenate reductase YP_002486315.1 PFAM: FAD dependent oxidoreductase; KEGG: aau:AAur_pTC20060 hypothetical protein YP_002486316.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: art:Arth_1867 ATPase AAA, central domain protein YP_002486317.1 KEGG: art:Arth_3182 hypothetical protein YP_002486318.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; KEGG: art:Arth_0111 Cof-like hydrolase YP_002486319.1 KEGG: rsa:RSal33209_1124 hypothetical protein YP_002486320.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: art:Arth_0112 glycerophosphoryl diester phosphodiesterase YP_002486321.1 KEGG: art:Arth_0121 hypothetical protein YP_002486322.1 PFAM: EAL domain protein; KEGG: art:Arth_3854 diguanylate phosphodiesterase YP_002486323.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: art:Arth_0113 diguanylate cyclase/phosphodiesterase YP_002486324.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: art:Arth_0116 multi-sensor signal transduction histidine kinase YP_002486325.1 KEGG: aau:AAur_3237 hypothetical protein YP_002486326.1 PFAM: methyltransferase type 12; KEGG: art:Arth_0118 methyltransferase type 12 YP_002486329.1 PFAM: glycerate kinase; KEGG: art:Arth_0123 glycerate kinase YP_002486330.1 KEGG: cau:Caur_1917 regulatory protein LuxR YP_002486331.1 KEGG: art:Arth_0124 hypothetical protein YP_002486332.1 KEGG: art:Arth_0125 hypothetical protein YP_002486333.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: art:Arth_0126 short-chain dehydrogenase/reductase SDR YP_002486334.1 KEGG: art:Arth_0127 hypothetical protein YP_002486335.1 PFAM: protein of unknown function DUF336; KEGG: aau:AAur_0712 hypothetical protein YP_002486336.1 PFAM: oxidoreductase; oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: aau:AAur_0713 oxidoreductase family protein YP_002486337.1 KEGG: art:Arth_0570 hypothetical protein YP_002486338.1 PFAM: protein of unknown function DUF1080; KEGG: rba:RB3944 hypothetical protein YP_002486339.1 PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: aau:AAur_0715 hypothetical protein YP_002486340.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: aau:AAur_0716 myo-inositol 2-dehydrogenase YP_002486341.1 PFAM: oxidoreductase; KEGG: art:Arth_0573 oxidoreductase YP_002486342.1 PFAM: xylose isomerase; KEGG: art:Arth_0574 xylose isomerase domain protein TIM barrel YP_002486343.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_0575 binding-protein-dependent transport systems inner membrane component YP_002486344.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_0576 binding-protein-dependent transport systems inner membrane component YP_002486345.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_0577 extracellular solute-binding protein YP_002486346.1 KEGG: art:Arth_0578 hypothetical protein YP_002486347.1 PFAM: oxidoreductase; KEGG: art:Arth_0579 oxidoreductase YP_002486348.1 PFAM: ROK family protein; KEGG: aau:AAur_0719 ROK family transcriptional regulator YP_002486349.1 PFAM: regulatory protein TetR; KEGG: art:Arth_3341 TetR family transcriptional regulator YP_002486350.1 PFAM: glycoside hydrolase; KEGG: aau:AAur_0658 beta-glucosidase YP_002486351.1 KEGG: art:Arth_0513 response regulator receiver and ANTAR domain protein YP_002486352.1 PFAM: lipolytic protein G-D-S-L family; KEGG: art:Arth_0269 lipolytic enzyme, G-D-S-L family YP_002486353.1 KEGG: hne:HNE_0309 major facilitator family transporter YP_002486354.1 TIGRFAM: uracil-xanthine permease; PFAM: Benzoate membrane transporter; xanthine/uracil/vitamin C permease; KEGG: art:Arth_0128 uracil-xanthine permease YP_002486355.1 PFAM: nitroreductase; KEGG: aau:AAur_0092 hypothetical protein YP_002486356.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_002486357.1 PFAM: NERD domain protein; KEGG: art:Arth_0132 NERD domain protein YP_002486358.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_002486359.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: krh:KRH_21290 amino acid transporter YP_002486360.1 KEGG: aau:AAur_0096 hypothetical protein YP_002486361.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_2015 GntR family transcriptional regulator YP_002486362.1 PFAM: citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: art:Arth_2014 dicarboxylate carrier MatC domain protein YP_002486363.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: art:Arth_2013 L-carnitine dehydratase/bile acid-inducible protein F YP_002486364.1 PFAM: carboxyl transferase; KEGG: art:Arth_2012 carboxyl transferase YP_002486365.1 KEGG: art:Arth_2421 uncharacterized integral membrane protein-like protein YP_002486366.1 KEGG: fre:Franean1_4236 hypothetical protein YP_002486369.1 PFAM: amidase; KEGG: art:Arth_0135 amidase YP_002486370.1 PFAM: rhodanese; KEGG: aau:AAur_0100 rhodanese-related sulfurtransferase YP_002486371.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: art:Arth_0138 prephenate dehydratase YP_002486373.1 PFAM: diacylglycerol kinase; KEGG: art:Arth_0139 diacylglycerol kinase, catalytic region YP_002486374.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002486375.1 KEGG: aau:AAur_0104 hypothetical protein YP_002486376.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_3450 acetyltransferase, GNAT family protein YP_002486377.1 KEGG: mrd:Mrad2831_1389 RNA-directed DNA polymerase YP_002486378.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rha:RHA1_ro00594 cystathionine beta-synthase YP_002486379.1 PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_3442 transmembrane efflux protein (MFS) YP_002486380.1 PFAM: rhodanese; KEGG: aau:AAur_3443 rhodanese-like domain-containing protein YP_002486381.1 PFAM: Luciferase-like monooxygenase; KEGG: fal:FRAAL4930 monooxygenase YP_002486382.1 KEGG: aau:AAur_3440 monooxygenase YP_002486383.1 KEGG: aau:AAur_3439 monooxygenase YP_002486384.1 PFAM: extracellular solute-binding protein family 5; KEGG: aau:AAur_3438 ABC-type dipeptide/oligopeptide transporter YP_002486385.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_3437 ABC-type dipeptide/oligopeptide/nickel transporters, permeases YP_002486386.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_3436 ABC-type dipeptide/oligopeptide/nickel transporters, permease YP_002486387.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_3435 peptide ABC transporter ATP-binding protein YP_002486388.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: aau:AAur_0105 haloacid dehalogenase-like hydrolase YP_002486389.1 PFAM: phosphoglycerate mutase; KEGG: art:Arth_0069 broad-specificity phosphatase PhoE YP_002486390.1 KEGG: art:Arth_0142 hypothetical protein YP_002486391.1 KEGG: aau:AAur_0127 hypothetical protein YP_002486392.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: art:Arth_0143 fructose-6-phosphate phosphoketolase YP_002486393.1 KEGG: art:Arth_0144 hypothetical protein YP_002486394.1 PFAM: carboxylesterase type B; KEGG: art:Arth_0145 carboxylesterase, type B YP_002486395.1 PFAM: inorganic pyrophosphatase; KEGG: art:Arth_0146 inorganic diphosphatase YP_002486396.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: art:Arth_0147 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_002486398.1 KEGG: art:Arth_0148 hypothetical protein YP_002486399.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: art:Arth_0149 tRNA(Ile)-lysidine synthetase YP_002486400.1 KEGG: art:Arth_0150 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_002486401.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sus:acid_5268 glyoxalase/bleomycin resistance protein/dioxygenase YP_002486402.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: aau:AAur_0695 LacI family transcriptional regulator YP_002486403.1 KEGG: art:Arth_0151 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_002486404.1 PFAM: GTP cyclohydrolase I; KEGG: art:Arth_0152 GTP cyclohydrolase I YP_002486405.1 KEGG: art:Arth_0153 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_002486406.1 TIGRFAM: dihydroneopterin aldolase; KEGG: art:Arth_0154 dihydroneopterin aldolase YP_002486407.1 KEGG: art:Arth_0155 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_002486408.1 KEGG: art:Arth_0156 conserved hypothetical membrane protein with unknown function YP_002486409.1 PFAM: membrane-flanked domain; KEGG: aau:AAur_0144 integral membrane protein YP_002486410.1 PFAM: membrane-flanked domain; KEGG: art:Arth_0158 membrane-flanked domain YP_002486411.1 KEGG: art:Arth_0159 hypothetical protein YP_002486412.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002486413.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: art:Arth_0370 HNH nuclease YP_002486414.1 TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: aau:AAur_0082 PfpI family intracellular peptidase YP_002486415.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0161 drug resistance transporter EmrB/QacA subfamily YP_002486416.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_0162 alpha/beta hydrolase fold YP_002486417.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_0163 hypothetical protein YP_002486418.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002486419.1 KEGG: art:Arth_0166 hypothetical protein YP_002486420.1 KEGG: art:Arth_0167 Lsr2-like protein YP_002486421.1 PFAM: UvrB/UvrC protein; ATPase AAA central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA; SMART: ATPase AAA; KEGG: art:Arth_0168 ATPase AAA YP_002486422.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: art:Arth_0169 peptidase S9, prolyl oligopeptidase active site domain protein YP_002486423.1 catalyzes the conversion of l-glutamate to a-N-acetyl-l-glutamate in arginine biosynthesis YP_002486424.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase YP_002486425.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: art:Arth_0173 dihydroxyacetone kinase, L subunit YP_002486426.1 TIGRFAM: phosphocarrier, HPr family; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; KEGG: art:Arth_0174 dihydroxyacetone kinase, phosphotransfer subunit YP_002486428.1 KEGG: art:Arth_0175 hypothetical protein YP_002486429.1 KEGG: aau:AAur_0858 hypothetical protein YP_002486430.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III HhH domain protein; SMART: iron-sulfur cluster loop; KEGG: aau:AAur_0183 A/G-specific adenine glycosylase YP_002486431.1 KEGG: aau:AAur_0184 hypothetical protein YP_002486432.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_002486433.1 KEGG: mgi:Mflv_3626 hypothetical protein YP_002486435.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: art:Arth_0191 bacterial peptide chain release factor 3 (bRF-3) YP_002486436.1 PFAM: beta-ketoacyl synthase; KEGG: art:Arth_0304 3-oxoacyl-[acyl-carrier-protein] synthase II YP_002486437.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: bra:BRADO1564 (D)-glucarate dehydratase 1 YP_002486438.1 PFAM: aldehyde dehydrogenase; KEGG: art:Arth_0036 aldehyde dehydrogenase YP_002486439.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_002486440.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_0038 LysR family transcriptional regulator YP_002486441.1 PFAM: conserved hypothetical protein; KEGG: msm:MSMEG_0122 periplasmic solute-binding protein YP_002486442.1 KEGG: msm:MSMEG_0123 hypothetical protein YP_002486443.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: msm:MSMEG_0125 integral membrane protein YP_002486444.1 PFAM: UspA domain protein; KEGG: aau:AAur_0701 universal stress family domain-containing protein YP_002486446.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_3569 NUDIX hydrolase YP_002486447.1 KEGG: art:Arth_0057 hypothetical protein YP_002486448.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002486449.1 KEGG: art:Arth_0201 hypothetical protein YP_002486450.1 TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_0195 phosphate ABC transporter phosphate-binding protein YP_002486451.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_0203 phosphate ABC transporter inner membrane subunit PstC YP_002486452.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_0204 phosphate ABC transporter inner membrane subunit PstA YP_002486453.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002486454.1 KEGG: aau:AAur_0298 hypothetical protein YP_002486455.1 PFAM: phosphate transporter; KEGG: art:Arth_0206 phosphate transporter YP_002486456.1 KEGG: art:Arth_0207 Pit accessory protein YP_002486457.1 KEGG: art:Arth_0208 hypothetical protein YP_002486458.1 KEGG: msm:MSMEG_2500 hypothetical protein YP_002486459.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_0219 transcriptional regulator, LacI family YP_002486460.1 KEGG: art:Arth_0220 lipoprotein YP_002486461.1 PFAM: peptidase C60 sortase A and B; KEGG: art:Arth_0221 peptidase C60, sortase A and B YP_002486462.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: aau:AAur_0455 RNA polymerase ECF-subfamily sigma factor YP_002486463.1 KEGG: aau:AAur_0456 hypothetical protein YP_002486464.1 KEGG: aau:AAur_0404 hypothetical protein YP_002486466.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: fre:Franean1_6643 deaminase-reductase domain-containing protein YP_002486467.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_002486468.1 catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate YP_002486469.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_002486470.1 PFAM: ANTAR domain protein; KEGG: aau:AAur_0357 ANTAR domain-containing protein YP_002486471.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: art:Arth_0226 alpha-N-arabinofuranosidase YP_002486472.1 PFAM: HhH-GPD family protein; KEGG: art:Arth_0249 HhH-GPD family protein YP_002486473.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_0228 transcriptional regulator, LacI family YP_002486474.1 PFAM: GTPase EngC; KEGG: sen:SACE_7050 ribosome-associated GTPase YP_002486475.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04995 major facilitator superfamily multidrug resistance protein YP_002486477.1 KEGG: mab:MAB_1067 hypothetical protein YP_002486478.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_002486479.1 KEGG: art:Arth_0242 urease subunit beta; TIGRFAM: urease, subunit beta; PFAM: Urease subunit beta YP_002486480.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_002486481.1 involved in the assembly of the urease metallocenter; nickel donor YP_002486482.1 PFAM: Urease accessory protein UreF; KEGG: art:Arth_0245 urease accessory protein UreF YP_002486483.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: aau:AAur_0219 urease accessory protein UreG YP_002486484.1 PFAM: Urease accessory protein UreD; KEGG: art:Arth_0247 urease accessory protein UreD YP_002486485.1 PFAM: high-affinity nickel-transporter; KEGG: aau:AAur_0222 high-affinity nickel-transporter YP_002486486.1 KEGG: kra:Krad_3740 secreted protein YP_002486487.1 PFAM: extracellular solute-binding protein family 1; KEGG: cmi:CMM_0086 sugar ABC transporter binding protein YP_002486488.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cmi:CMM_0085 sugar ABC transporter permease YP_002486489.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_0086 ABC transporter sugar permease YP_002486490.1 KEGG: msm:MSMEG_5142 beta-glucosidase A; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1 YP_002486491.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: fre:Franean1_5463 LacI family transcription regulator YP_002486492.1 KEGG: art:Arth_0071 transferase hexapeptide repeat containing protein YP_002486493.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_3959 GntR family transcriptional regulator YP_002486494.1 PFAM: transketolase; transketolase domain protein; KEGG: art:Arth_3958 transketolase subunit B YP_002486495.1 PFAM: transketolase; KEGG: art:Arth_3957 transketolase subunit A YP_002486496.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_3956 major facilitator superfamily MFS_1 YP_002486497.1 PFAM: xylose isomerase; KEGG: art:Arth_3955 xylose isomerase domain protein TIM barrel YP_002486498.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aau:AAur_4134 short chain dehydrogenase/reductase family oxidoreductase YP_002486499.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_002486500.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase; PFAM: ribose/galactose isomerase; KEGG: art:Arth_3952 ribose-5-phosphate isomerase YP_002486501.1 KEGG: aau:AAur_0488 hypothetical protein YP_002486502.1 KEGG: art:Arth_3265 hypothetical protein YP_002486503.1 PFAM: carboxylesterase type B; KEGG: bsu:BSU34390 para-nitrobenzyl esterase (intracellular esterase B) YP_002486504.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: aau:AAur_pTC20242 ANTAR domain-containing protein YP_002486505.1 KEGG: art:Arth_3243 hypothetical protein YP_002486506.1 SMART: ATPase AAA; KEGG: rha:RHA1_ro06011 ABC transporter ATP-binding component YP_002486507.1 KEGG: aau:AAur_0063 integral membrane protein YP_002486508.1 KEGG: nar:Saro_2406 twin-arginine translocation pathway signal YP_002486509.1 PFAM: glycoside hydrolase family 1; KEGG: cau:Caur_0360 glycoside hydrolase family protein YP_002486510.1 PFAM: extracellular solute-binding protein family 5; KEGG: fre:Franean1_0426 extracellular solute-binding protein YP_002486511.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fre:Franean1_0427 binding-protein-dependent transporters inner membrane component YP_002486512.1 KEGG: azc:AZC_3043 oligopeptide/dipeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: binding-protein-dependent transporters inner membrane component; ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002486513.1 KEGG: bbt:BBta_4864 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002486514.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: kra:Krad_0119 alpha-L-rhamnosidase YP_002486515.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: pen:PSEEN2266 hypothetical protein YP_002486516.1 KEGG: art:Arth_1970 hypothetical protein YP_002486517.1 KEGG: nar:Saro_2411 twin-arginine translocation pathway signal YP_002486518.1 PFAM: glycoside hydrolase family 43; KEGG: sco:SCO0118 xylosidase/arabinosidase YP_002486519.1 KEGG: art:Arth_3620 hypothetical protein YP_002486520.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_3621 LysR family transcriptional regulator YP_002486521.1 PFAM: sodium/hydrogen exchanger; KEGG: art:Arth_1886 sodium/hydrogen exchanger YP_002486522.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: sen:SACE_2823 IclR family transcriptional regulator YP_002486523.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: rha:RHA1_ro03902 alpha-L-rhamnosidase YP_002486524.1 KEGG: hch:HCH_01563 esterase/lipase YP_002486525.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: kra:Krad_4309 alpha/beta hydrolase domain-containing protein YP_002486526.1 KEGG: aau:AAur_0776 hypothetical protein YP_002486527.1 KEGG: aau:AAur_2013 hypothetical protein YP_002486528.1 PFAM: glycerate kinase; KEGG: nfa:nfa27590 hypothetical protein YP_002486529.1 PFAM: sodium:dicarboxylate symporter; KEGG: rha:RHA1_ro04802 C4-dicarboxylate transporter YP_002486530.1 KEGG: rha:RHA1_ro04803 3-isopropylmalate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_002486531.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rha:RHA1_ro04804 LysR family transcriptional regulator YP_002486532.1 KEGG: mkm:Mkms_5703 hypothetical protein YP_002486533.1 PFAM: sodium symporter; KEGG: art:Arth_0102 bile acid:sodium symporter YP_002486534.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002486535.1 PFAM: alpha/beta hydrolase fold; AMP-dependent synthetase and ligase; KEGG: aau:AAur_1999 hydrolase YP_002486536.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: aau:AAur_2000 dehydrogenase YP_002486537.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: sat:SYN_00679 lipase YP_002486538.1 PFAM: fumarylacetoacetate hydrolase; KEGG: rha:RHA1_ro03909 fumarylacetoacetate hydrolase YP_002486539.1 PFAM: monooxygenase FAD-binding; KEGG: rha:RHA1_ro03910 hypothetical protein YP_002486540.1 KEGG: msm:MSMEG_2481 hypothetical protein YP_002486542.1 PFAM: cupin; KEGG: rha:RHA1_ro03906 hypothetical protein YP_002486543.1 KEGG: aau:AAur_2038 hypothetical protein YP_002486544.1 PFAM: xylose isomerase; KEGG: sma:SAV_5310 hypothetical protein YP_002486545.1 KEGG: aau:AAur_0270 hypothetical protein YP_002486546.1 KEGG: art:Arth_3581 hypothetical protein YP_002486547.1 KEGG: aau:AAur_3910 hypothetical protein YP_002486548.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002486549.1 PFAM: dimethylmenaquinone methyltransferase; KEGG: aau:AAur_3908 demethylmenaquinone methyltransferase YP_002486550.1 PFAM: Integrase catalytic region; KEGG: mgi:Mflv_0382 integrase catalytic subunit YP_002486551.1 KEGG: art:Arth_0267 hypothetical protein YP_002486552.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aau:AAur_3906 nitrogen assimilation regulatory protein YP_002486553.1 PFAM: LamB/YcsF family protein; KEGG: aau:AAur_3905 LamB/YcsF family protein YP_002486554.1 PFAM: allophanate hydrolase subunit 1; KEGG: aau:AAur_3904 allophanate hydrolase subunit 1 family protein YP_002486555.1 PFAM: allophanate hydrolase subunit 2; KEGG: aau:AAur_3903 allophanate hydrolase subunit 2 YP_002486556.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_3902 major facilitator transporter YP_002486557.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: rha:RHA1_ro03292 short chain dehydrogenase YP_002486558.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rsa:RSal33209_1041 D-3-phosphoglycerate dehydrogenase YP_002486559.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: art:Arth_2452 short-chain dehydrogenase/reductase SDR YP_002486560.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_2451 alcohol dehydrogenase, zinc-binding domain protein YP_002486561.1 KEGG: cmi:CMM_2271 gluconokinase/dehydrogenase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_002486562.1 PFAM: regulatory protein TetR; KEGG: oan:Oant_3360 TetR family transcriptional regulator YP_002486563.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pmr:PMI2231 transporter YP_002486564.1 KEGG: aau:AAur_3578 integral membrane protein YP_002486565.1 PFAM: aldo/keto reductase; KEGG: art:Arth_3948 aldo/keto reductase YP_002486566.1 KEGG: art:Arth_2153 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_002486567.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: aau:AAur_3963 NAD dependent epimerase/dehydratase family protein YP_002486568.1 PFAM: alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: art:Arth_0256 alpha amylase, catalytic region YP_002486569.1 KEGG: aau:AAur_0227 ATP/GTP-binding protein YP_002486570.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: art:Arth_0257 modification methylase, HemK family YP_002486571.1 KEGG: art:Arth_1427 HNH endonuclease YP_002486573.1 KEGG: art:Arth_0260 hypothetical protein YP_002486574.1 PFAM: transglycosylase; KEGG: aau:AAur_3922 integral membrane protein YP_002486575.1 PFAM: aldo/keto reductase; KEGG: art:Arth_0262 2,5-didehydrogluconate reductase YP_002486576.1 PFAM: FG-GAP repeat protein; KEGG: bha:BH1114 hypothetical protein YP_002486577.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: art:Arth_0263 NAD-dependent epimerase/dehydratase YP_002486578.1 PFAM: aldo/keto reductase; KEGG: art:Arth_0264 aldo/keto reductase YP_002486579.1 PFAM: aldo/keto reductase; KEGG: aau:AAur_0231 2,5-diketo-D-gluconic acid reductase YP_002486580.1 SMART: helix-turn-helix domain protein; KEGG: aau:AAur_0232 transcriptional regulator YP_002486581.1 KEGG: aau:AAur_0225 hypothetical protein YP_002486582.1 PFAM: protein of unknown function DUF1458; KEGG: aau:AAur_0233 protein of unknown function (DUF1458) YP_002486583.1 PFAM: Pectate lyase/Amb allergen; KEGG: tfu:Tfu_0153 pectate lyase/Amb allergen YP_002486584.1 PFAM: pectinesterase; Pectate lyase/Amb allergen; KEGG: aau:AAur_0237 pectinesterase/pectate lyase protein YP_002486585.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_0238 ABC-type sugar transport system, permease YP_002486586.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_0239 ABC-type sugar transport system, permease YP_002486587.1 PFAM: extracellular solute-binding protein family 1; KEGG: tfu:Tfu_1702 sugar-binding protein YP_002486588.1 KEGG: aau:AAur_0241 hypothetical protein YP_002486589.1 PFAM: glycoside hydrolase family 43; KEGG: aau:AAur_0242 xylosidase/arabinosidase YP_002486590.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: aau:AAur_0243 LacI family transcriptional regulator YP_002486591.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_0271 GntR family transcriptional regulator YP_002486592.1 KEGG: art:Arth_0272 hypothetical protein YP_002486593.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: art:Arth_0273 6-phosphogluconate dehydrogenase, NAD-binding YP_002486594.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function YP_002486595.1 PFAM: ketose-bisphosphate aldolase class-II; KEGG: art:Arth_0275 fructose-bisphosphate aldolase YP_002486596.1 PFAM: protein of unknown function DUF1304; KEGG: art:Arth_0276 protein of unknown function DUF1304 YP_002486597.1 KEGG: art:Arth_0277 hypothetical protein YP_002486598.1 KEGG: art:Arth_0278 acetyltransferase-like protein YP_002486600.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: art:Arth_0285 pyridoxal-dependent decarboxylase YP_002486601.1 KEGG: art:Arth_0286 L-lysine 6-monooxygenase (NADPH) YP_002486602.1 KEGG: art:Arth_0287 aceytltranferase YP_002486603.1 PFAM: IucA/IucC family protein; KEGG: art:Arth_0288 IucA/IucC family protein YP_002486604.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_0289 short-chain dehydrogenase/reductase SDR YP_002486605.1 KEGG: art:Arth_0290 hypothetical protein YP_002486606.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_0291 general substrate transporter YP_002486607.1 KEGG: aau:AAur_0282 hypothetical protein YP_002486608.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA and has been shown to have polymerase activity YP_002486609.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: art:Arth_0295 DNA end-binding protein Ku YP_002486610.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_1059 methyltransferase type 11 YP_002486611.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: art:Arth_2422 activator of HSP90 ATPase 1 family protein YP_002486612.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: aau:AAur_0293 phosphocarrier protein HPr YP_002486613.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIsubunit alpha; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIsubunit beta; KEGG: aau:AAur_0294 PTS system, fructose-specific family, IIABC components YP_002486614.1 TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: art:Arth_0300 PfkB domain protein YP_002486615.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: art:Arth_0301 DeoR family transcriptional regulator YP_002486616.1 KEGG: art:Arth_0302 hypothetical protein YP_002486617.1 PFAM: phospholipase/carboxylesterase; KEGG: art:Arth_0305 phospholipase/carboxylesterase YP_002486618.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: art:Arth_0307 beta-phosphoglucomutase family hydrolase YP_002486619.1 PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: art:Arth_0308 kojibiose phosphorylase YP_002486620.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: art:Arth_0310 major facilitator superfamily MFS_1 YP_002486621.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002486622.1 KEGG: art:Arth_0768 L-serine dehydratase; TIGRFAM: L-serine dehydratase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_002486623.1 PFAM: glycine hydroxymethyltransferase; KEGG: aau:AAur_4004 serine hydroxymethyltransferase YP_002486624.1 TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage H-protein; KEGG: aau:AAur_4005 glycine cleavage system protein H YP_002486625.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002486626.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_002486627.1 PFAM: amino acid permease-associated region; KEGG: aau:AAur_0842 D-serine/D-alanine/glycine transporter YP_002486628.1 KEGG: art:Arth_0312 hypothetical protein YP_002486629.1 PFAM: LamB/YcsF family protein; KEGG: aau:AAur_0364 LamB/YcsF family protein YP_002486630.1 PFAM: protein of unknown function DUF445; KEGG: art:Arth_0319 protein of unknown function DUF445 YP_002486631.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: art:Arth_0320 glycerophosphoryl diester phosphodiesterase YP_002486632.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: aau:AAur_2076 CaiB/BaiF family acyl-CoA thioesterase YP_002486633.1 KEGG: art:Arth_0323 hypothetical protein YP_002486634.1 PFAM: AzlC family protein; KEGG: art:Arth_0324 AzlC family protein YP_002486635.1 PFAM: branched-chain amino acid transport; KEGG: art:Arth_0325 hypothetical protein YP_002486637.1 KEGG: art:Arth_0326 hypothetical protein YP_002486638.1 KEGG: art:Arth_0327 hypothetical protein YP_002486639.1 PFAM: regulatory protein TetR; KEGG: art:Arth_0331 TetR family transcriptional regulator YP_002486640.1 PFAM: protein of unknown function DUF77; KEGG: aau:AAur_0374 hypothetical protein YP_002486641.1 PFAM: O-methyltransferase family 3; KEGG: art:Arth_0333 O-methyltransferase, family 3 YP_002486642.1 PFAM: ferritin; KEGG: art:Arth_0334 ferritin, Dps family protein YP_002486643.1 KEGG: art:Arth_0335 hypothetical protein YP_002486644.1 PFAM: LmbE family protein; NodS family protein; methyltransferase type 11; methyltransferase type 12; KEGG: aau:AAur_3424 hypothetical protein YP_002486645.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_0337 glycosyl transferase, family 2 YP_002486646.1 KEGG: art:Arth_4523 hypothetical protein YP_002486647.1 PFAM: ribonuclease BN; KEGG: art:Arth_0345 ribonuclease BN YP_002486648.1 KEGG: art:Arth_0346 hypothetical protein YP_002486649.1 PFAM: protein of unknown function DUF1469; KEGG: art:Arth_0347 protein of unknown function DUF1469 YP_002486650.1 KEGG: art:Arth_0348 hypothetical protein YP_002486651.1 KEGG: art:Arth_0660 hypothetical protein YP_002486652.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: art:Arth_0349 NAD-dependent epimerase/dehydratase YP_002486653.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_0350 RNA polymerase, sigma 28 subunit YP_002486654.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: art:Arth_0352 hydrolase, HAD-superfamily, subfamily IIIA YP_002486655.1 PFAM: glycosyl transferase family 9; KEGG: art:Arth_0353 glycosyl transferase, family 9 YP_002486656.1 KEGG: art:Arth_0354 transferase YP_002486657.1 PFAM: glycosyl transferase group 1; KEGG: art:Arth_0355 glycosyl transferase, group 1 YP_002486658.1 PFAM: sugar isomerase (SIS); KEGG: art:Arth_0356 phosphoheptose isomerase YP_002486659.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: art:Arth_0357 cytidyltransferase-related domain protein YP_002486660.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_0358 short-chain dehydrogenase/reductase SDR YP_002486661.1 PFAM: aldehyde dehydrogenase; KEGG: art:Arth_0360 aldehyde dehydrogenase YP_002486662.1 TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: art:Arth_0361 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase YP_002486663.1 KEGG: art:Arth_0362 spermidine synthase YP_002486664.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_0364 LysR family transcriptional regulator YP_002486665.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_0365 general substrate transporter YP_002486666.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: art:Arth_0366 3-hydroxybutyrate dehydrogenase YP_002486667.1 KEGG: art:Arth_0368 hypothetical protein YP_002486668.1 PFAM: helix-turn-helix HxlR type; KEGG: cms:CMS_2972 hypothetical protein YP_002486669.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: krh:KRH_16940 NAD(P)H--quinone oxidoreductase YP_002486670.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: art:Arth_0367 lysine exporter protein (LysE/YggA) YP_002486671.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_0369 amino acid permease-associated region YP_002486672.1 SMART: HNH nuclease; KEGG: art:Arth_0370 HNH nuclease YP_002486673.1 PFAM: protein of unknown function DUF664; KEGG: art:Arth_3852 protein of unknown function DUF664 YP_002486674.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bph:Bphy_2128 methyltransferase type 11 YP_002486675.1 PFAM: regulatory protein ArsR; regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_0373 IclR family transcripitonal regulator YP_002486676.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002486677.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_002486679.1 KEGG: art:Arth_0377 hypothetical protein YP_002486680.1 PFAM: fumarylacetoacetate hydrolase; KEGG: aau:AAur_3802 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_002486681.1 PFAM: UspA domain protein; KEGG: art:Arth_1392 UspA domain protein YP_002486682.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: aau:AAur_0702 integral membrane protein YP_002486683.1 KEGG: aau:AAur_0703 integral membrane protein YP_002486684.1 PFAM: conserved hypothetical protein; KEGG: aau:AAur_0704 lipoprotein, ATP binding protein YP_002486685.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: art:Arth_1396 signal transduction histidine kinase regulating citrate/malate metabolism YP_002486686.1 PFAM: response regulator receiver; KEGG: aau:AAur_0706 two-component system response regulator YP_002486687.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_002486688.1 PFAM: sodium/hydrogen exchanger; KEGG: aau:AAur_0586 sodium/hydrogen exchanger family protein YP_002486689.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: art:Arth_0380 xanthine/uracil/vitamin C permease YP_002486690.1 PFAM: copper resistance protein CopC; KEGG: art:Arth_0381 copper resistance protein CopC YP_002486691.1 KEGG: art:Arth_0382 hypothetical protein YP_002486692.1 PFAM: UspA domain protein; KEGG: art:Arth_0383 UspA domain protein YP_002486693.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: art:Arth_0384 pyruvate, water dikinase YP_002486694.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_0386 ABC transporter YP_002486695.1 KEGG: art:Arth_0387 ABC transporter integral membrane protein YP_002486696.1 PFAM: NLP/P60 protein; KEGG: art:Arth_0388 NLP/P60 protein YP_002486697.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: art:Arth_0389 cation diffusion facilitator family transporter YP_002486698.1 PFAM: protein of unknown function DUF1025; KEGG: art:Arth_0390 protein of unknown function DUF1025 YP_002486699.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: art:Arth_0391 protein of unknown function DUF6, transmembrane YP_002486700.1 PFAM: DSBA oxidoreductase; KEGG: art:Arth_4443 DsbA oxidoreductase YP_002486701.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: art:Arth_0395 hypothetical protein YP_002486702.1 PFAM: polysaccharide deacetylase; KEGG: art:Arth_1227 polysaccharide deacetylase YP_002486703.1 PFAM: glycoside hydrolase family 68; KEGG: art:Arth_0405 levansucrase YP_002486704.1 PFAM: protein of unknown function DUF322; KEGG: art:Arth_0407 protein of unknown function DUF322 YP_002486705.1 KEGG: art:Arth_0408 hypothetical protein YP_002486706.1 KEGG: art:Arth_0409 hypothetical protein YP_002486707.1 KEGG: art:Arth_0410 hypothetical protein YP_002486708.1 KEGG: art:Arth_0411 hypothetical protein YP_002486709.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: art:Arth_0412 alpha amylase, catalytic region YP_002486710.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_0413 extracellular solute-binding protein, family 1 YP_002486711.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_0414 binding-protein-dependent transport systems inner membrane component YP_002486712.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_0415 binding-protein-dependent transport systems inner membrane component YP_002486713.1 KEGG: art:Arth_0416 hypothetical protein YP_002486714.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_0417 transcriptional regulator, LacI family YP_002486715.1 KEGG: art:Arth_0418 hypothetical protein YP_002486716.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: aau:AAur_0464 exodeoxyribonuclease III YP_002486717.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: aau:AAur_0499 methylmalonate-semialdehyde dehydrogenase YP_002486718.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_002486719.1 KEGG: art:Arth_0422 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding YP_002486720.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: art:Arth_0423 short chain enoyl-CoA hydratase YP_002486721.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aau:AAur_0979 pyridine nucleotide-disulphide oxidoreductase domain-containing protein YP_002486722.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: nfa:nfa45130 hypothetical protein YP_002486723.1 PFAM: SNARE associated Golgi protein; KEGG: aau:AAur_0942 DedA family membrane protein YP_002486724.1 PFAM: regulatory protein MarR; KEGG: aau:AAur_0508 MarR family transcriptional regulator YP_002486725.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: aau:AAur_0510 glutaryl-CoA dehydrogenase YP_002486726.1 PFAM: regulatory protein MerR; TipAS antibiotic-recognition domain protein; KEGG: aau:AAur_0517 MerR family transcriptional regulator YP_002486727.1 KEGG: art:Arth_0937 hypothetical protein YP_002486728.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: art:Arth_0472 cold-shock DNA-binding protein family YP_002486729.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: art:Arth_0485 two component LuxR family transcriptional regulator YP_002486730.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: art:Arth_0486 periplasmic sensor signal transduction histidine kinase YP_002486731.1 PFAM: protein of unknown function DUF336; KEGG: art:Arth_0487 protein of unknown function DUF336 YP_002486732.1 PFAM: ankyrin; KEGG: aau:AAur_0469 ankyrin repeat-containing protein YP_002486733.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002486734.1 KEGG: art:Arth_0490 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase subunit beta; PFAM: coenzyme A transferase YP_002486735.1 PFAM: short chain fatty acid transporter; KEGG: rha:RHA1_ro02134 short-chain fatty acid MFS superfamily protein YP_002486736.1 KEGG: art:Arth_0491 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase subunit alpha; PFAM: coenzyme A transferase YP_002486737.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_0492 IclR family transcripitonal regulator YP_002486738.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002486739.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002486740.1 PFAM: ANTAR domain protein; KEGG: art:Arth_0513 response regulator receiver and ANTAR domain protein YP_002486741.1 KEGG: art:Arth_0280 hypothetical protein YP_002486742.1 KEGG: art:Arth_0514 hypothetical protein YP_002486743.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: haloacid dehalogenase; KEGG: art:Arth_0515 HAD-superfamily hydrolase, subfamily IIA YP_002486744.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: art:Arth_0517 tRNA/rRNA methyltransferase (SpoU) YP_002486745.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002486746.1 KEGG: art:Arth_0519 hypothetical protein YP_002486747.1 KEGG: art:Arth_0520 hypothetical protein YP_002486748.1 KEGG: kra:Krad_2451 hypothetical protein YP_002486749.1 TIGRFAM: peptidase S26B, signal peptidase; KEGG: kra:Krad_2450 peptidase S26B, signal peptidase YP_002486750.1 KEGG: cms:CMS_2940 sortase-sorted surface-anchored protein YP_002486751.1 KEGG: kra:Krad_2448 hypothetical protein YP_002486752.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: bha:BH3831 hypothetical protein YP_002486753.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002486754.1 PFAM: protein of unknown function DUF1508; KEGG: art:Arth_0075 hypothetical protein YP_002486755.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_0528 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002486756.1 KEGG: art:Arth_0529 hypothetical protein YP_002486757.1 PFAM: CoA-binding protein; KEGG: art:Arth_0534 CoA-binding protein YP_002486758.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: mlo:mlr6892 hypothetical protein YP_002486759.1 PFAM: protein of unknown function DUF419; KEGG: aau:AAur_0610 hypothetical protein YP_002486760.1 KEGG: art:Arth_0536 hypothetical protein YP_002486761.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: art:Arth_0538 antibiotic biosynthesis monooxygenase YP_002486762.1 PFAM: protein of unknown function DUF503; KEGG: art:Arth_0539 protein of unknown function DUF503 YP_002486763.1 KEGG: rsa:RSal33209_2213 hypothetical protein YP_002486764.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002486765.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; KEGG: art:Arth_0541 phosphoribosylformylglycinamidine synthase I YP_002486766.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: art:Arth_0542 phosphoribosylformylglycinamidine synthase, PurS YP_002486767.1 KEGG: aau:AAur_0632 hypothetical protein YP_002486768.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: aau:AAur_0637 subtilisin-like serine proteinase protein YP_002486769.1 KEGG: art:Arth_0545 hypothetical protein YP_002486770.1 KEGG: art:Arth_0546 hypothetical protein YP_002486771.1 KEGG: art:Arth_0547 hypothetical protein YP_002486772.1 PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; Penicillinase repressor; KEGG: art:Arth_0549 MarR family transcriptional regulator YP_002486773.1 KEGG: art:Arth_0550 hypothetical protein YP_002486774.1 KEGG: art:Arth_0551 hypothetical protein YP_002486775.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_002486776.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sen:SACE_1928 ABC transporter ATP-binding protein YP_002486777.1 KEGG: sen:SACE_1927 hypothetical protein YP_002486778.1 KEGG: aau:AAur_0664 integral membrane protein YP_002486779.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002486780.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002486781.1 KEGG: aau:AAur_0672 hypothetical protein YP_002486782.1 PFAM: peptidase M23; KEGG: art:Arth_0558 peptidase M23B YP_002486783.1 PFAM: glutathione peroxidase; KEGG: art:Arth_0559 glutathione peroxidase YP_002486784.1 PFAM: metallophosphoesterase; KEGG: art:Arth_0561 metallophosphoesterase YP_002486785.1 KEGG: art:Arth_0562 UDP-glucose-4-epimerase YP_002486786.1 KEGG: art:Arth_0563 hypothetical protein YP_002486787.1 KEGG: aau:AAur_0681 hypothetical protein YP_002486788.1 KEGG: art:Arth_0565 hypothetical protein YP_002486789.1 PFAM: regulatory protein TetR; KEGG: art:Arth_0566 TetR family transcriptional regulator YP_002486790.1 PFAM: DSBA oxidoreductase; KEGG: art:Arth_0567 DsbA oxidoreductase YP_002486791.1 PFAM: glycosyl transferase group 1; KEGG: aau:AAur_0690 glycosyl transferase, group 1 family protein YP_002486792.1 PFAM: Amylo-alpha-16-glucosidase; KEGG: aau:AAur_0691 glycogen debranching enzyme family protein YP_002486793.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_0568 GCN5-related N-acetyltransferase YP_002486794.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: aau:AAur_0069 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_002486795.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0581 major facilitator superfamily MFS_1 YP_002486796.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_002486797.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: art:Arth_0583 isocitrate lyase YP_002486798.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: aau:AAur_0723 helix-turn-helix domain-containing protein YP_002486799.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: art:Arth_0585 TRAP transporter solute receptor, TAXI family YP_002486800.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: art:Arth_0586 periplasmic sensor signal transduction histidine kinase YP_002486801.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: art:Arth_0587 two component transcriptional regulator, winged helix family YP_002486802.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_0731 MFS dicarboxylate transporter YP_002486803.1 KEGG: aau:AAur_3649 hypothetical protein YP_002486804.1 PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro00262 TetR family transcriptional regulator YP_002486805.1 KEGG: cms:CMS_2911 surface-anchored protein YP_002486806.1 catalyzes the formation of acetate from pyruvate YP_002486807.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_002486809.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: art:Arth_0594 hypothetical protein YP_002486810.1 PFAM: regulatory protein TetR; KEGG: aau:AAur_0734 TetR family transcriptional regulator YP_002486811.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: art:Arth_0596 hypothetical protein YP_002486812.1 KEGG: art:Arth_0597 hypothetical protein YP_002486813.1 KEGG: art:Arth_0599 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: queuine/other tRNA-ribosyltransferase YP_002486814.1 KEGG: aau:AAur_0737 hypothetical protein YP_002486815.1 KEGG: art:Arth_0601 hypothetical protein YP_002486816.1 KEGG: art:Arth_0602 hypothetical protein YP_002486817.1 KEGG: art:Arth_0603 hypothetical protein YP_002486818.1 KEGG: art:Arth_0604 hypothetical protein YP_002486819.1 KEGG: art:Arth_3796 levanase; PFAM: glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32 YP_002486820.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: art:Arth_0605 ABC transporter YP_002486821.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_0606 binding-protein-dependent transport systems inner membrane component YP_002486822.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_0607 extracellular solute-binding protein, family 1 YP_002486823.1 KEGG: art:Arth_0608 glycosyl hydrolase YP_002486824.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_0609 short-chain dehydrogenase/reductase SDR YP_002486825.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: art:Arth_0610 acyl-CoA dehydrogenase domain protein YP_002486826.1 PFAM: protein of unknown function DUF1684; KEGG: art:Arth_0611 protein of unknown function DUF1684 YP_002486827.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: art:Arth_0613 NADP oxidoreductase, coenzyme F420-dependent YP_002486828.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: art:Arth_0614 phosphoenolpyruvate carboxylase YP_002486829.1 KEGG: art:Arth_0615 hypothetical protein YP_002486830.1 PFAM: SNARE associated Golgi protein; KEGG: aau:AAur_0766 DedA family membrane protein YP_002486831.1 PFAM: pseudouridine synthase; KEGG: art:Arth_0617 pseudouridine synthase YP_002486832.1 PFAM: regulatory protein ArsR; KEGG: art:Arth_0618 regulatory protein, ArsR YP_002486833.1 KEGG: art:Arth_0619 hypothetical protein YP_002486834.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: art:Arth_0620 GntR family transcriptional regulator YP_002486835.1 PFAM: protein of unknown function DUF161; KEGG: art:Arth_0621 protein of unknown function DUF161 YP_002486836.1 PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: art:Arth_0622 formamidopyrimidine-DNA glycolase YP_002486837.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases; KEGG: art:Arth_0623 DEAD/DEAH box helicase YP_002486838.1 KEGG: rha:RHA1_ro03416 hypothetical protein YP_002486839.1 KEGG: art:Arth_0626 secreted lipoprotein YP_002486840.1 PFAM: nuclear export factor GLE1; KEGG: art:Arth_0627 nuclear export factor GLE1 YP_002486841.1 KEGG: art:Arth_0628 hypothetical protein YP_002486842.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: mxa:MXAN_2267 oxidoreductase, 2-nitropropane dioxygenase family YP_002486843.1 KEGG: art:Arth_0630 hypothetical protein YP_002486844.1 PFAM: regulatory protein TetR; Resolvase helix-turn-helix domain protein; KEGG: cmi:CMM_2894 TetR family transcriptional regulator YP_002486845.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cmi:CMM_2893 short chain dehydrogenase/oxidoreductase YP_002486846.1 PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: art:Arth_2055 monooxygenase, FAD-binding YP_002486847.1 PFAM: aminoglycoside phosphotransferase; KEGG: mva:Mvan_5815 aminoglycoside phosphotransferase YP_002486848.1 PFAM: regulatory protein TetR; KEGG: mjl:Mjls_5623 TetR family transcriptional regulator YP_002486849.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV_6956 ferredoxin reductase YP_002486850.1 KEGG: tfu:Tfu_1226 hypothetical protein YP_002486851.1 PFAM: cytochrome P450; KEGG: tfu:Tfu_1225 cytochrome P450 YP_002486852.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_3555 EmrB/QacA family drug resistance transporter YP_002486853.1 PFAM: aryldialkylphosphatase; KEGG: mtf:TBFG_10232 phosphotriesterase PHP (parathion hydrolase) YP_002486854.1 PFAM: aryldialkylphosphatase; KEGG: gka:GK1506 phosphotriesterase YP_002486855.1 PFAM: monooxygenase FAD-binding; KEGG: mab:MAB_3330 salicylate hydroxylase YP_002486856.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: sth:STH2125 lipase YP_002486857.1 PFAM: beta-lactamase; KEGG: rxy:Rxyl_0546 beta-lactamase-like protein YP_002486858.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: cma:Cmaq_1499 X-Pro dipeptidyl-peptidase domain-containing protein YP_002486859.1 PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: aau:AAur_0309 MarR family transcriptional regulator YP_002486860.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cmi:CMM_0648 efflux MFS permease YP_002486861.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: aau:AAur_0520 LacI family transcriptional regulator YP_002486862.1 PFAM: xylose isomerase; KEGG: aau:AAur_0524 sugar phosphate isomerase/epimerase YP_002486863.1 PFAM: oxidoreductase; oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: cgt:cgR_2455 hypothetical protein YP_002486864.1 PFAM: extracellular solute-binding protein family 5; KEGG: fre:Franean1_0449 extracellular solute-binding protein YP_002486865.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fre:Franean1_0427 binding-protein-dependent transporters inner membrane component YP_002486866.1 PFAM: binding-protein-dependent transporters inner membrane component; ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: fre:Franean1_0428 ABC transporter related YP_002486867.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: fre:Franean1_0452 ABC transporter related YP_002486868.1 PFAM: xylose isomerase; KEGG: cgt:cgR_2457 hypothetical protein YP_002486869.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: cgt:cgR_2456 hypothetical protein YP_002486870.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_0495 transcriptional regulator, LacI family YP_002486871.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism YP_002486872.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: art:Arth_0503 mannitol dehydrogenase YP_002486873.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; KEGG: sew:SeSA_A3314 glucuronide carrier protein YP_002486874.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: aau:AAur_0529 starvation sensing protein YP_002486875.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; glycoside hydrolase family 3 domain protein; KEGG: art:Arth_0505 gluconate kinase YP_002486876.1 TIGRFAM: hypothetical protein; PFAM: YD repeat-containing protein; KEGG: lxx:Lxx18740 rhs-related protein YP_002486877.1 KEGG: aau:AAur_2805 hypothetical protein YP_002486878.1 SMART: HNH nuclease; KEGG: art:Arth_0370 HNH nuclease YP_002486879.1 KEGG: art:Arth_0642 dehydrogenase YP_002486880.1 KEGG: art:Arth_0643 hypothetical protein YP_002486881.1 PFAM: glycosyl transferase group 1; KEGG: art:Arth_0644 glycosyl transferase, group 1 YP_002486882.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: aau:AAur_0794 cytidine/deoxycytidylate deaminase YP_002486883.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: art:Arth_0646 phosphoesterase, PA-phosphatase related YP_002486884.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002486885.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aau:AAur_0797 glyoxalase family protein YP_002486886.1 KEGG: art:Arth_0653 hypothetical protein YP_002486887.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: art:Arth_0654 periplasmic sensor signal transduction histidine kinase YP_002486888.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: art:Arth_0655 two component transcriptional regulator, winged helix family YP_002486889.1 PFAM: transcriptional regulator; KEGG: art:Arth_0657 response regulator receiver protein YP_002486890.1 PFAM: phosphoglycerate mutase; KEGG: art:Arth_0659 phosphohistidine phosphatase, SixA YP_002486891.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aau:AAur_0807 LysR family transcriptional regulator YP_002486892.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: art:Arth_0661 protein of unknown function DUF6, transmembrane YP_002486893.1 KEGG: aau:AAur_0817 hypothetical protein YP_002486894.1 PFAM: regulatory protein TetR; KEGG: art:Arth_0662 TetR family transcriptional regulator YP_002486895.1 TIGRFAM: YhgE/Pip N-terminal domain protein; YhgE/Pip C-terminal domain protein; PFAM: ABC transporter; KEGG: art:Arth_0663 ABC transporter YP_002486896.1 KEGG: art:Arth_0664 hypothetical protein YP_002486897.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: art:Arth_0665 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_002486898.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_002486899.1 PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: art:Arth_0668 globin YP_002486900.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: art:Arth_0669 transcriptional regulator, BadM/Rrf2 family YP_002486901.1 KEGG: art:Arth_0670 hypothetical protein YP_002486902.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: art:Arth_0671 phosphomannomutase YP_002486903.1 KEGG: art:Arth_0672 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases YP_002486904.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0673 major facilitator superfamily MFS_1 YP_002486905.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cms:CMS_1269 acetyltransferase YP_002486906.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: art:Arth_0675 peptidase S9, prolyl oligopeptidase active site domain protein YP_002486907.1 KEGG: art:Arth_0676 hypothetical protein YP_002486908.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: art:Arth_3036 taurine dioxygenase YP_002486909.1 PFAM: metallophosphoesterase; endonuclease/exonuclease/phosphatase; 5'-nucleotidase domain protein; KEGG: art:Arth_0677 5'-nucleotidase domain protein YP_002486910.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_0678 glyoxalase/bleomycin resistance protein/dioxygenase YP_002486911.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_0679 alcohol dehydrogenase, zinc-binding domain protein YP_002486912.1 PFAM: transcriptional regulator PadR family protein; KEGG: aau:AAur_0847 PadR family transcriptional regulator YP_002486913.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rsa:RSal33209_0623 ABC transporter ATP-binding protein YP_002486914.1 PFAM: protein of unknown function DUF214; KEGG: rsa:RSal33209_0625 hypothetical protein YP_002486915.1 PFAM: carbon starvation protein CstA; KEGG: art:Arth_0681 carbon starvation protein CstA YP_002486916.1 KEGG: art:Arth_0682 hypothetical protein YP_002486917.1 KEGG: art:Arth_0683 hypothetical protein YP_002486918.1 KEGG: art:Arth_0684 hypothetical protein YP_002486919.1 PFAM: aldo/keto reductase; KEGG: art:Arth_0685 2,5-didehydrogluconate reductase YP_002486920.1 KEGG: art:Arth_0686 hypothetical protein YP_002486922.1 KEGG: art:Arth_0687 hypothetical protein YP_002486923.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; FAD dependent oxidoreductase; KEGG: aau:AAur_0954 NADH dehydrogenase YP_002486924.1 KEGG: art:Arth_0457 hypothetical protein YP_002486925.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: art:Arth_0715 TAP domain protein YP_002486926.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the subunit beta on the DNA YP_002486927.1 PFAM: thymidylate kinase; KEGG: art:Arth_0717 dTMP kinase YP_002486928.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: art:Arth_0718 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_002486929.1 PFAM: cyclic nucleotide-binding; KEGG: art:Arth_0719 hypothetical protein YP_002486930.1 KEGG: aau:AAur_0891 hypothetical protein YP_002486931.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002486932.1 TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: art:Arth_0722 phosphate uptake regulator, PhoU YP_002486933.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: art:Arth_0723 histidine kinase YP_002486934.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: art:Arth_0724 two component transcriptional regulator, winged helix family YP_002486935.1 KEGG: art:Arth_0725 hypothetical protein YP_002486936.1 PFAM: transcription factor CarD; KEGG: aau:AAur_0897 CarD-like transcriptional regulator YP_002486937.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: art:Arth_0727 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002486938.1 KEGG: aau:AAur_0899 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_002486939.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002486940.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: art:Arth_0731 RNA methyltransferase, TrmH family, group 3 YP_002486941.1 KEGG: art:Arth_0733 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002486942.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: aau:AAur_0905 ribonuclease YP_002486943.1 PFAM: Barstar (barnase inhibitor); KEGG: art:Arth_0735 hypothetical protein YP_002486944.1 KEGG: art:Arth_0736 alpha-glucan phosphorylases; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_002486945.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: art:Arth_0737 alpha amylase, catalytic region YP_002486946.1 KEGG: art:Arth_0738 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002486947.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002486948.1 KEGG: art:Arth_0740 hypothetical protein YP_002486949.1 PFAM: FAD linked oxidase; KEGG: art:Arth_0748 FAD linked oxidase YP_002486950.1 KEGG: art:Arth_0749 hypothetical protein YP_002486951.1 PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: aau:AAur_0929 sugar ABC transportor, ATP-binding protein YP_002486952.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: art:Arth_0751 HAD-superfamily hydrolase, subfamily IIB YP_002486953.1 PFAM: glycosyl transferase family 20; KEGG: art:Arth_0752 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_002486954.1 PFAM: DSBA oxidoreductase; KEGG: art:Arth_0753 DsbA oxidoreductase YP_002486955.1 PFAM: cation transport regulator ChaB; KEGG: aau:AAur_1997 cation transport regulator ChaB YP_002486956.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002486957.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_2006 major facilitator superfamily MFS_1 YP_002486959.1 KEGG: aau:AAur_0971 hypothetical protein YP_002486960.1 KEGG: art:Arth_0757 hypothetical protein YP_002486961.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_0758 amino acid permease-associated region YP_002486962.1 PFAM: ferritin; KEGG: art:Arth_0761 ferritin, Dps family protein YP_002486963.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0762 major facilitator superfamily MFS_1 YP_002486964.1 PFAM: regulatory protein TetR; KEGG: art:Arth_0763 TetR family transcriptional regulator YP_002486965.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_002486966.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002486967.1 KEGG: art:Arth_0768 L-serine dehydratase; TIGRFAM: L-serine dehydratase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_002486968.1 PFAM: TspO/MBR family protein; KEGG: art:Arth_0769 TspO and MBR like proteins YP_002486969.1 PFAM: methicillin resistance protein; KEGG: aau:AAur_0993 FemAB family protein YP_002486970.1 PFAM: methicillin resistance protein; KEGG: aau:AAur_0994 FemAB family protein YP_002486971.1 PFAM: protein of unknown function DUF1212; KEGG: art:Arth_0772 protein of unknown function DUF1212 YP_002486972.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: art:Arth_0773 siderophore-interacting protein YP_002486973.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002486974.1 KEGG: aau:AAur_0998 hypothetical protein YP_002486975.1 KEGG: art:Arth_0776 hypothetical protein YP_002486976.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: art:Arth_0777 cold-shock DNA-binding protein family YP_002486977.1 PFAM: extracellular ligand-binding receptor; KEGG: art:Arth_0778 extracellular ligand-binding receptor YP_002486978.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002486979.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_0780 extracellular solute-binding protein, family 1 YP_002486980.1 PFAM: ribonuclease H; KEGG: art:Arth_0781 ribonuclease H YP_002486981.1 PFAM: protein of unknown function DUF909; KEGG: art:Arth_0782 protein of unknown function DUF909 YP_002486982.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: art:Arth_0783 periplasmic sensor signal transduction histidine kinase YP_002486983.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: art:Arth_0784 two component transcriptional regulator, winged helix family YP_002486984.1 PFAM: polysaccharide deacetylase; KEGG: amu:Amuc_1500 polysaccharide deacetylase YP_002486985.1 KEGG: npu:Npun_R5185 hypothetical protein YP_002486986.1 PFAM: protein of unknown function DUF427; KEGG: cms:CMS_2342 hypothetical protein YP_002486987.1 KEGG: art:Arth_0785 hypothetical protein YP_002486988.1 KEGG: art:Arth_0786 hypothetical protein YP_002486989.1 PFAM: helicase; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: aau:AAur_1011 ATP-dependent DNA helicase YP_002486990.1 KEGG: art:Arth_0788 hypothetical protein YP_002486991.1 KEGG: art:Arth_0789 hypothetical protein YP_002486992.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: art:Arth_0790 cold-shock DNA-binding protein family YP_002486993.1 KEGG: aau:AAur_1014 hypothetical protein YP_002486994.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_002486995.1 PFAM: iron dependent repressor; FeoA family protein; KEGG: art:Arth_0794 iron (metal) dependent repressor, DtxR family YP_002486996.1 PFAM: peptidase M23; KEGG: aau:AAur_1018 M23 peptidase domain-containing protein YP_002486997.1 PFAM: NLP/P60 protein; KEGG: art:Arth_0796 NLP/P60 protein YP_002486998.1 PFAM: NLP/P60 protein; KEGG: art:Arth_0797 NLP/P60 protein YP_002486999.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: art:Arth_0798 HNH endonuclease YP_002487000.1 KEGG: art:Arth_0799 molybdopterin-guanine dinucleotide biosynthesis protein YP_002487001.1 KEGG: art:Arth_0800 molybdopterin-guanine dinucleotide biosynthesis protein YP_002487002.1 PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: art:Arth_0801 molybdopterin binding domain YP_002487003.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: aau:AAur_1024 formate dehydrogenase family accessory protein FdhD YP_002487004.1 PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; glycoside hydrolase family 38 central region; KEGG: art:Arth_0803 glycoside hydrolase, family 38 YP_002487005.1 KEGG: art:Arth_0804 hypothetical protein YP_002487006.1 KEGG: art:Arth_0805 hypothetical protein YP_002487007.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_1033 ABC transporter ATP-binding protein YP_002487008.1 PFAM: ABC transporter transmembrane protein; ABC transporter related; SMART: ATPase AAA; KEGG: aau:AAur_1034 ABC transporter ATP-binding protein YP_002487009.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_0808 NUDIX hydrolase YP_002487010.1 KEGG: aau:AAur_1036 hypothetical protein YP_002487011.1 KEGG: art:Arth_0810 hypothetical protein YP_002487012.1 KEGG: art:Arth_0811 hypothetical protein YP_002487013.1 PFAM: inositol monophosphatase; KEGG: art:Arth_0812 inositol monophosphatase YP_002487014.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: art:Arth_0813 ATP-dependent DNA helicase PcrA YP_002487015.1 KEGG: art:Arth_0814 hypothetical protein YP_002487016.1 catalyzes the interconversion of succinyl-CoA and succinate YP_002487017.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_002487018.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: art:Arth_0817 activator of HSP90 ATPase 1 family protein YP_002487019.1 PFAM: regulatory protein ArsR; KEGG: art:Arth_0818 ArsR family transcriptional regulator YP_002487020.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: aau:AAur_1976 tautomerase enzyme family protein YP_002487021.1 PFAM: PfkB domain protein; KEGG: aau:AAur_1977 myo-inositol catabolism protein IolC YP_002487022.1 KEGG: art:Arth_0821 hypothetical protein YP_002487023.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: art:Arth_0822 thiamine pyrophosphate enzyme domain protein TPP-binding YP_002487024.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: acyl-CoA reductase; aldehyde dehydrogenase; KEGG: art:Arth_0823 methylmalonate-semialdehyde dehydrogenase [acylating] YP_002487025.1 PFAM: xylose isomerase; KEGG: art:Arth_0824 xylose isomerase domain protein TIM barrel YP_002487026.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: art:Arth_0825 inositol 2-dehydrogenase YP_002487027.1 PFAM: xylose isomerase; KEGG: art:Arth_0826 xylose isomerase domain protein TIM barrel YP_002487028.1 KEGG: sen:SACE_4658 sugar transporter; TIGRFAM: sugar transporter; PFAM: general substrate transporter; major facilitator superfamily MFS_1 YP_002487029.1 PFAM: regulatory protein MarR; KEGG: art:Arth_0828 MarR family transcriptional regulator YP_002487030.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_0829 major facilitator superfamily MFS_1 YP_002487031.1 KEGG: aau:AAur_3198 hypothetical protein YP_002487034.1 KEGG: bph:Bphy_7308 hypothetical protein YP_002487037.1 KEGG: cte:CT1526 Rab family protein YP_002487038.1 KEGG: art:Arth_0463 hypothetical protein YP_002487039.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: art:Arth_0471 resolvase YP_002487040.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sen:SACE_3275 LacI family transcription regulator YP_002487041.1 PFAM: myo-inositol catabolism IolB domain protein; KEGG: aau:AAur_1995 myo-inositol catabolism protein IolB YP_002487042.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: aau:AAur_1996 GntR family transcriptional regulator YP_002487043.1 KEGG: rha:RHA1_ro01361 major facilitator superfamily sugar transporter; TIGRFAM: sugar transporter; PFAM: general substrate transporter; major facilitator superfamily MFS_1 YP_002487044.1 KEGG: art:Arth_0842 hypothetical protein YP_002487045.1 PFAM: peptidase M10A and M12B matrixin and adamalysin; KEGG: art:Arth_0843 hypothetical protein YP_002487046.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: art:Arth_0844 protein of unknown function DUF125, transmembrane YP_002487047.1 KEGG: art:Arth_0845 hypothetical protein YP_002487048.1 PFAM: Na+/solute symporter; KEGG: art:Arth_0846 Na+/solute symporter YP_002487049.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: art:Arth_0847 transcriptional regulator, XRE family with cupin sensor YP_002487050.1 KEGG: aau:AAur_1056 hypothetical protein YP_002487051.1 TIGRFAM: agmatinase; PFAM: arginase/agmatinase/formiminoglutamase; KEGG: art:Arth_0851 agmatinase YP_002487052.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: aau:AAur_1059 acetolactate synthase, large subunit YP_002487053.1 PFAM: regulatory protein MarR; SMART: regulatory protein ArsR; KEGG: art:Arth_0853 HxlR family transcriptional regulator YP_002487054.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_1061 EmrB/QacA family drug resistance transporter YP_002487055.1 PFAM: ABC transporter transmembrane protein; ABC transporter related; SMART: ATPase AAA; KEGG: art:Arth_0857 ABC transporter related YP_002487056.1 PFAM: ABC transporter transmembrane protein; ABC transporter related; SMART: ATPase AAA; KEGG: art:Arth_0858 ABC transporter transmembrane protein YP_002487057.1 KEGG: aau:AAur_1064 hypothetical protein YP_002487058.1 KEGG: art:Arth_0860 hypothetical protein YP_002487059.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: art:Arth_0862 ATPase associated with various cellular activities, AAA_5 YP_002487060.1 KEGG: aau:AAur_1070 hypothetical protein YP_002487061.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: art:Arth_0866 periplasmic sensor signal transduction histidine kinase YP_002487062.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: art:Arth_0867 two component transcriptional regulator, winged helix family YP_002487063.1 PFAM: Hpt domain protein; KEGG: aau:AAur_pTC20233 hypothetical protein YP_002487064.1 PFAM: glycoside hydrolase family 26; KEGG: art:Arth_0871 beta-mannanase-like protein YP_002487065.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: art:Arth_0872 T/G mismatch-specific endonuclease YP_002487066.1 KEGG: art:Arth_0873 hypothetical protein YP_002487067.1 KEGG: art:Arth_0874 hypothetical protein YP_002487068.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine YP_002487069.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: aau:AAur_1092 hypothetical protein YP_002487070.1 KEGG: art:Arth_0876 hypothetical protein YP_002487071.1 KEGG: art:Arth_0877 hypothetical protein YP_002487072.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: aau:AAur_1099 oxidoreductase, FAD/FMN-binding family protein YP_002487073.1 KEGG: art:Arth_0894 hypothetical protein YP_002487074.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: art:Arth_0895 RNA binding S1 domain protein YP_002487076.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: art:Arth_0902 NAD-dependent epimerase/dehydratase YP_002487077.1 KEGG: aau:AAur_1116 hypothetical protein YP_002487078.1 KEGG: art:Arth_0904 hypothetical protein YP_002487079.1 PFAM: peptidoglycan-binding LysM; transglycosylase; KEGG: art:Arth_0905 transglycosylase YP_002487080.1 KEGG: art:Arth_0907 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase YP_002487081.1 KEGG: art:Arth_0911 hypothetical protein YP_002487082.1 catalyzes the hydrolysis of acylphosphate YP_002487083.1 KEGG: art:Arth_0890 hypothetical protein YP_002487084.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: msm:MSMEG_2910 GntR family transcriptional regulator protein YP_002487085.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: msm:MSMEG_2912 inner membrane metabolite transport protein YdfJ YP_002487086.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: kra:Krad_2131 alcohol dehydrogenase YP_002487087.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: msm:MSMEG_2909 starvation-sensing protein RspA YP_002487088.1 PFAM: PfkB domain protein; KEGG: msm:MSMEG_2908 2-keto-3-deoxy-gluconate kinase YP_002487089.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: kra:Krad_0583 mannitol dehydrogenase domain-containing protein YP_002487090.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: sgr:SGR_5216 KDPG and KHG aldolase YP_002487091.1 PFAM: integral membrane protein TerC; KEGG: art:Arth_0919 integral membrane protein TerC YP_002487092.1 KEGG: aau:AAur_0950 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases YP_002487093.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: art:Arth_0908 oxidoreductase alpha (molybdopterin) subunit YP_002487094.1 KEGG: art:Arth_0920 molybdopterin-guanine dinucleotide biosynthesis protein YP_002487095.1 PFAM: aldo/keto reductase; KEGG: art:Arth_0910 aldo/keto reductase YP_002487096.1 TIGRFAM: formaldehyde dehydrogenase, glutathione-independent; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_0560 alcohol dehydrogenase GroES domain protein YP_002487097.1 KEGG: art:Arth_0921 hypothetical protein YP_002487098.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0928 major facilitator superfamily MFS_1 YP_002487099.1 PFAM: dienelactone hydrolase; BAAT/acyl-CoA thioester hydrolase; KEGG: rsa:RSal33209_2854 carboxymethylenebutenolidase YP_002487100.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tfu:Tfu_0833 alpha-glucosidase YP_002487101.1 TIGRFAM: methyltransferase; PFAM: O-methyltransferase domain protein; KEGG: art:Arth_0933 methyltransferase YP_002487102.1 PFAM: regulatory protein ArsR; activator of Hsp90 ATPase 1 family protein; KEGG: aau:AAur_1126 ArsR family transcriptional regulator YP_002487103.1 KEGG: art:Arth_0441 hypothetical protein YP_002487104.1 PFAM: regulatory protein LuxR; KEGG: art:Arth_0440 LuxR family transcriptional regulator YP_002487105.1 PFAM: cupin; KEGG: art:Arth_0927 cupin 2, conserved barrel domain protein YP_002487106.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0932 major facilitator superfamily MFS_1 YP_002487107.1 KEGG: rha:RHA1_ro05887 hypothetical protein YP_002487108.1 PFAM: Domain of unknown function DUF1801; KEGG: aau:AAur_4035 hypothetical protein YP_002487109.1 PFAM: xylose isomerase; KEGG: pde:Pden_1099 xylose isomerase domain protein TIM barrel YP_002487110.1 KEGG: art:Arth_2858 hypothetical protein YP_002487111.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_2008 hypothetical protein YP_002487112.1 PFAM: protein of unknown function DUF664; KEGG: art:Arth_0936 protein of unknown function DUF664 YP_002487113.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: kra:Krad_3588 major facilitator transporter YP_002487114.1 PFAM: regulatory protein MarR; KEGG: rsa:RSal33209_0055 MarR family transcriptional regulator YP_002487115.1 KEGG: art:Arth_0922 hypothetical protein YP_002487116.1 PFAM: SOUL heme-binding protein; KEGG: art:Arth_0891 SOUL heme-binding protein YP_002487117.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_0923 GCN5-related N-acetyltransferase YP_002487118.1 PFAM: helix-turn-helix domain protein; KEGG: cms:CMS_0326 DNA-binding protein YP_002487119.1 KEGG: bte:BTH_I2344 ribose ABC transporter permease YP_002487120.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro06619 lyase YP_002487121.1 KEGG: art:Arth_1112 hypothetical protein YP_002487122.1 PFAM: protein of unknown function DUF1486; KEGG: fal:FRAAL5602 hypothetical protein YP_002487123.1 KEGG: art:Arth_0439 hypothetical protein YP_002487124.1 KEGG: nca:Noca_2675 pentapeptide repeat-containing protein YP_002487125.1 PFAM: UspA domain protein; KEGG: aau:AAur_0506 universal stress family domain-containing protein YP_002487126.1 proposed role in polysaccahride synthesis YP_002487127.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_0956 GCN5-related N-acetyltransferase YP_002487128.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0961 major facilitator superfamily MFS_1 YP_002487129.1 KEGG: kra:Krad_3184 hypothetical protein YP_002487130.1 TIGRFAM: PTS system, glucose subfamily, IIsubunit alpha; PTS system, beta-glucoside-specific IIABC subunit; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: art:Arth_1892 PTS system, beta-glucoside-specific IIABC subunit YP_002487131.1 PFAM: glycoside hydrolase family 1; KEGG: art:Arth_1891 glycoside hydrolase, family 1 YP_002487132.1 PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: art:Arth_1890 transcriptional antiterminator, BglG YP_002487133.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: art:Arth_1889 phosphocarrier, HPr family YP_002487134.1 PFAM: phosphoglycerate mutase; KEGG: lwe:lwe0522 phosphoglycerate mutase family protein YP_002487135.1 PFAM: FAD linked oxidase; KEGG: sen:SACE_3889 FAD-binding oxidoreductase YP_002487136.1 PFAM: protein of unknown function DUF1275; KEGG: kra:Krad_0144 hypothetical protein YP_002487137.1 KEGG: art:Arth_0943 hypothetical protein YP_002487138.1 PFAM: protein of unknown function DUF1295; KEGG: art:Arth_0946 protein of unknown function DUF1295 YP_002487139.1 PFAM: integral membrane protein TerC; KEGG: aau:AAur_pTC10270 tellurium resistance protein TerC YP_002487140.1 KEGG: aau:AAur_1902 diacylglycerol kinase catalytic subunit YP_002487141.1 KEGG: art:Arth_4132 hypothetical protein YP_002487143.1 KEGG: mrd:Mrad2831_5747 hypothetical protein YP_002487144.1 PFAM: amidohydrolase; amidohydrolase; KEGG: aau:AAur_0925 amidohydrolase family protein YP_002487145.1 KEGG: art:Arth_3362 hypothetical protein YP_002487146.1 KEGG: aau:AAur_0562 integral membrane protein YP_002487147.1 PFAM: beta-lactamase; KEGG: mmi:MMAR_4623 penicillin binding protein YP_002487148.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_0280 proline-betaine transporter YP_002487149.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter; KEGG: aau:AAur_3661 sulfate transporter family protein YP_002487150.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_0066 alcohol dehydrogenase GroES domain protein YP_002487151.1 PFAM: hydrophobic; KEGG: art:Arth_1941 clostridial hydrophobic YP_002487152.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cmi:CMM_2138 hypothetical protein YP_002487154.1 PFAM: alpha/beta hydrolase fold; KEGG: aau:AAur_3178 hydrolase alpha/beta fold domain-containing protein YP_002487156.1 KEGG: sgr:SGR_77t hypothetical protein YP_002487158.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: art:Arth_0969 thiamine pyrophosphate enzyme TPP binding domain protein YP_002487159.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_0970 AsnC family transcriptional regulator YP_002487160.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: art:Arth_0971 aminotransferase YP_002487161.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_0972 amino acid permease-associated region YP_002487162.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: fal:FRAAL4987 HTH-type transcriptional regulator YP_002487163.1 PFAM: plasmid maintenance system killer; KEGG: rpi:Rpic_3169 plasmid maintenance system killer YP_002487164.1 KEGG: nca:Noca_3572 hypothetical protein YP_002487166.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sma:SAV_1356 GntR family transcriptional regulator YP_002487170.1 KEGG: rle:RL2161 hypothetical protein YP_002487171.1 PFAM: helicase; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: art:Arth_0977 type III restriction enzyme, res subunit YP_002487172.1 KEGG: CG30416; CG30416 YP_002487174.1 KEGG: cms:CMS_2663 hypothetical protein YP_002487175.1 KEGG: cef:CE2329 type I restriction-modification system subunit R; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases YP_002487176.1 PFAM: protein of unknown function DUF1016; KEGG: aau:AAur_2326 protein of unknown function (DUF1016) YP_002487177.1 KEGG: mva:Mvan_0035 hypothetical protein YP_002487178.1 PFAM: N-6 DNA methylase; KEGG: cef:CE2327 type I restriction-modification system methylase YP_002487179.1 KEGG: mva:Mvan_0033 hypothetical protein YP_002487180.1 KEGG: hypothetical protein YP_002487181.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_002487182.1 PFAM: regulatory protein DeoR; KEGG: art:Arth_1034 DeoR family transcriptional regulator YP_002487183.1 KEGG: art:Arth_1035 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA; type III effector Hrp-dependent outers YP_002487184.1 PFAM: extracellular solute-binding protein family 5; KEGG: art:Arth_1036 extracellular solute-binding protein YP_002487185.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_1037 binding-protein-dependent transport systems inner membrane component YP_002487186.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_1038 binding-protein-dependent transport systems inner membrane component YP_002487187.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_1039 ABC transporter YP_002487188.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_1040 ABC transporter YP_002487189.1 PFAM: aldo/keto reductase; KEGG: art:Arth_1041 aldo/keto reductase YP_002487190.1 PFAM: HpcH/HpaI aldolase; KEGG: art:Arth_1042 HpcH/HpaI aldolase YP_002487191.1 KEGG: art:Arth_1043 hypothetical protein YP_002487192.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_1044 short-chain dehydrogenase/reductase SDR YP_002487193.1 PFAM: lipase class 2; KEGG: art:Arth_1051 lipase, class 2 YP_002487194.1 KEGG: mgm:Mmc1_2964 alpha/beta hydrolase fold YP_002487195.1 KEGG: art:Arth_0893 hypothetical protein YP_002487196.1 KEGG: art:Arth_1048 hemerythrin HHE cation binding domain protein YP_002487197.1 KEGG: art:Arth_3899 hypothetical protein YP_002487198.1 KEGG: spl:Spea_1524 hypothetical protein YP_002487199.1 PFAM: fumarylacetoacetate hydrolase; KEGG: sen:SACE_2626 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_002487200.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vei:Veis_0185 ABC transporter YP_002487201.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bja:blr2225 amino acid ABC transporter permease YP_002487202.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: drm:Dred_1377 extracellular solute-binding protein YP_002487203.1 PFAM: amidase; KEGG: rha:RHA1_ro03496 glutamyl-tRNA(Gln) amidotransferase subunit A YP_002487204.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sen:SACE_3740 GntR family transcriptional regulator YP_002487205.1 PFAM: sodium symporter; KEGG: nar:Saro_0247 bile acid:sodium symporter YP_002487206.1 KEGG: art:Arth_1045 alkaline phosphatase YP_002487207.1 PFAM: transcription activator effector binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sco:SCO4223 AraC family transcription regulator YP_002487208.1 KEGG: art:Arth_1049 hypothetical protein YP_002487209.1 KEGG: art:Arth_3458 hypothetical protein YP_002487210.1 KEGG: aau:AAur_1169 hypothetical protein YP_002487211.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: art:Arth_1055 cold-shock DNA-binding protein family YP_002487212.1 PFAM: hypothetical protein; KEGG: art:Arth_1056 SARP family transcripitonal regulator YP_002487213.1 KEGG: cya:CYA_1433 lipoprotein YP_002487214.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_3527 GntR family transcriptional regulator YP_002487215.1 KEGG: art:Arth_3528 gluconate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_002487216.1 TIGRFAM: gluconate transporter; PFAM: gluconate transporter; citrate transporter; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: art:Arth_3529 gluconate transporter YP_002487217.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_1067 short-chain dehydrogenase/reductase SDR YP_002487218.1 KEGG: art:Arth_1016 hypothetical protein YP_002487219.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: art:Arth_2457 GntR family transcriptional regulator YP_002487220.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: art:Arth_2456 protein of unknown function DUF6, transmembrane YP_002487221.1 PFAM: negative transcriptional regulator; KEGG: aau:AAur_0277 protease synthase and sporulation negative regulatory protein YP_002487222.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA YP_002487223.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_3559 amino acid permease-associated region YP_002487224.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_3558 regulatory proteins, IclR YP_002487225.1 PFAM: transcriptional regulator IclR; KEGG: art:Arth_3557 regulatory proteins, IclR YP_002487226.1 converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines YP_002487227.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: aau:AAur_0080 riboflavin biosynthesis protein RibD YP_002487228.1 KEGG: art:Arth_3830 hypothetical protein YP_002487229.1 KEGG: art:Arth_1068 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002487230.1 PFAM: transglycosylase; KEGG: art:Arth_3565 hypothetical protein YP_002487231.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase; sucrose-6F-phosphate phosphohydrolase; haloacid dehalogenase type 3; KEGG: sgo:SGO_0313 HAD family phosphatase YP_002487232.1 PFAM: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; protein of unknown function DUF882; peptidase M15A; SMART: Lysozyme subfamily 2; KEGG: tbd:Tbd_1629 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase YP_002487233.1 KEGG: noc:Noc_2190 hypothetical protein YP_002487234.1 KEGG: hypothetical protein YP_002487235.1 KEGG: noc:Noc_2192 hypothetical protein YP_002487236.1 KEGG: noc:Noc_2193 hypothetical protein YP_002487238.1 PFAM: transcriptional activator domain; KEGG: sma:SAV_400 transcriptional regulator YP_002487239.1 KEGG: art:Arth_1069 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_002487240.1 PFAM: glycosyl transferase group 1; KEGG: art:Arth_1070 glycosyl transferase, group 1 YP_002487241.1 KEGG: aau:AAur_3970 hypothetical protein YP_002487242.1 KEGG: art:Arth_1086 hypothetical protein YP_002487243.1 KEGG: art:Arth_1087 hypothetical protein YP_002487244.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002487245.1 KEGG: aau:AAur_3685 hypothetical protein YP_002487246.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_1089 major facilitator superfamily MFS_1 YP_002487247.1 involved in de novo purine biosynthesis YP_002487249.1 KEGG: art:Arth_1091 hypothetical protein YP_002487250.1 KEGG: aau:AAur_1201 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate dehydrogenase NADP-dependent monomeric type YP_002487251.1 KEGG: art:Arth_1095 mucin-associated surface protein YP_002487252.1 PFAM: tyrosine protein kinase; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: art:Arth_1096 serine/threonine protein kinase YP_002487253.1 KEGG: art:Arth_1097 hypothetical protein YP_002487254.1 KEGG: art:Arth_1098 hypothetical protein YP_002487255.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: art:Arth_1099 oxidoreductase YP_002487256.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_1100 ABC transporter YP_002487257.1 PFAM: protein of unknown function DUF214; KEGG: art:Arth_1101 protein of unknown function DUF214 YP_002487258.1 PFAM: Pectate lyase/Amb allergen; KEGG: eca:ECA3112 pectate lyase YP_002487259.1 KEGG: art:Arth_1102 multiple sugar-binding periplasmic receptor YP_002487260.1 PFAM: inner-membrane translocator; KEGG: art:Arth_1103 inner-membrane translocator YP_002487261.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_1104 ABC transporter YP_002487262.1 PFAM: ROK family protein; KEGG: art:Arth_1105 ROK family protein YP_002487263.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: art:Arth_1106 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002487264.1 PFAM: purine catabolism PurC domain protein; KEGG: art:Arth_1107 purine catabolism PurC domain protein YP_002487265.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_1109 amino acid permease-associated region YP_002487266.1 PFAM: amine oxidase; KEGG: art:Arth_1110 amine oxidase YP_002487267.1 KEGG: art:Arth_1111 siderophore binding protein YP_002487268.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: art:Arth_1114 formyltetrahydrofolate deformylase YP_002487269.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002487270.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002487271.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_1229 ABC transporter ATP-binding protein YP_002487272.1 PFAM: ABC transporter; KEGG: art:Arth_1118 ABC-2 type transporter YP_002487273.1 PFAM: ABC transporter; KEGG: art:Arth_1119 ABC-2 type transporter YP_002487274.1 KEGG: art:Arth_1120 hypothetical protein YP_002487275.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: art:Arth_1121 exodeoxyribonuclease III Xth YP_002487276.1 KEGG: art:Arth_1122 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_002487277.1 PFAM: phosphoesterase HXTX; KEGG: art:Arth_1123 2',5' RNA ligase YP_002487278.1 PFAM: ribonuclease BN; KEGG: art:Arth_1124 ribonuclease BN YP_002487279.1 PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_1242 extracellular sugar-binding protein YP_002487280.1 KEGG: art:Arth_1127 redox protein YP_002487281.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_002487282.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_002487283.1 KEGG: aau:AAur_1246 succinate dehydrogenase, membrane subunit (SdhD) YP_002487284.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: art:Arth_1131 succinate dehydrogenase, cytochrome b subunit YP_002487285.1 PFAM: nucleotidyl transferase; KEGG: art:Arth_1132 mannose-1-phosphate guanylyltransferase (GDP) YP_002487286.1 KEGG: art:Arth_1133 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20 YP_002487287.1 PFAM: regulatory protein MarR; transcriptional regulator PadR family protein; KEGG: art:Arth_1134 transcriptional regulator, MarR family YP_002487288.1 PFAM: OsmC family protein; KEGG: art:Arth_1135 OsmC family protein YP_002487289.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: aau:AAur_1252 quinone oxidoreductase YP_002487290.1 PFAM: basic membrane lipoprotein; KEGG: art:Arth_1137 basic membrane lipoprotein YP_002487291.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_1138 ABC transporter YP_002487292.1 PFAM: inner-membrane translocator; KEGG: art:Arth_1139 inner-membrane translocator YP_002487293.1 PFAM: inner-membrane translocator; KEGG: art:Arth_1140 inner-membrane translocator YP_002487294.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: art:Arth_1141 cytidine deaminase YP_002487295.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_002487296.1 PFAM: SNARE associated Golgi protein; KEGG: art:Arth_1143 conserved protein DedA family YP_002487297.1 PFAM: SNARE associated Golgi protein; KEGG: art:Arth_1144 uncharacterized membrane-associated protein-like protein YP_002487298.1 catalyzes the formation of inosine from adenosine YP_002487299.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: art:Arth_1146 MazG family protein YP_002487300.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002487301.1 PFAM: septum formation initiator; KEGG: art:Arth_1148 septum formation initiator YP_002487302.1 PFAM: protein of unknown function DUF501; KEGG: aau:AAur_1265 protein of unknown function (DUF501) YP_002487303.1 PFAM: Ppx/GppA phosphatase; KEGG: art:Arth_1150 Ppx/GppA phosphatase YP_002487304.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: art:Arth_1151 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_002487305.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: art:Arth_1152 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002487306.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_1153 GCN5-related N-acetyltransferase YP_002487307.1 PFAM: extracellular ligand-binding receptor; KEGG: aau:AAur_1271 branched-chain amino acid ABC transporter YP_002487308.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_1273 branched-chain amino acid ABC transporter ATP-binding protein YP_002487309.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_1156 ABC transporter YP_002487310.1 PFAM: inner-membrane translocator; KEGG: art:Arth_1157 inner-membrane translocator YP_002487311.1 PFAM: inner-membrane translocator; KEGG: art:Arth_1158 inner-membrane translocator YP_002487312.1 PFAM: protein of unknown function DUF1112; KEGG: art:Arth_1159 protein of unknown function DUF1112 YP_002487313.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: art:Arth_1161 galactokinase YP_002487314.1 KEGG: art:Arth_1162 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_002487315.1 PFAM: aldose 1-epimerase; KEGG: aau:AAur_1281 aldose 1-epimerase YP_002487316.1 PFAM: protein of unknown function UPF0118; KEGG: art:Arth_1164 protein of unknown function UPF0118 YP_002487317.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_002487318.1 PFAM: rhomboid family protein; KEGG: aau:AAur_1284 rhomboid family membrane protein YP_002487319.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: art:Arth_1167 GreA/GreB family elongation factor YP_002487320.1 KEGG: art:Arth_1168 hypothetical protein YP_002487321.1 TIGRFAM: mycothiol conjugate amidase Mca; PFAM: LmbE family protein; KEGG: art:Arth_1169 LmbE family protein YP_002487322.1 KEGG: art:Arth_1170 hypothetical protein YP_002487323.1 PFAM: Hly-III family protein; KEGG: art:Arth_1172 Hly-III family protein YP_002487324.1 KEGG: art:Arth_1173 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_002487325.1 PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: art:Arth_1174 PhoH family protein YP_002487326.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_1175 GCN5-related N-acetyltransferase YP_002487327.1 KEGG: art:Arth_1176 hypothetical protein YP_002487328.1 PFAM: peptidase A24A prepilin type IV; KEGG: art:Arth_1177 peptidase A24A, prepilin type IV YP_002487329.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_1178 NUDIX hydrolase YP_002487330.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1179 drug resistance transporter EmrB/QacA subfamily YP_002487331.1 PFAM: regulatory protein TetR; KEGG: art:Arth_1180 TetR family transcriptional regulator YP_002487332.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_002487333.1 PFAM: carbonic anhydrase; KEGG: art:Arth_1182 carbonic anhydrase YP_002487334.1 KEGG: art:Arth_1183 hypothetical protein YP_002487335.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_002487336.1 PFAM: methicillin resistance protein; KEGG: rxy:Rxyl_0792 methicillin resistance protein YP_002487337.1 TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; KEGG: art:Arth_1186 mannose-6-phosphate isomerase YP_002487338.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: art:Arth_1187 cell envelope-related transcriptional attenuator YP_002487339.1 KEGG: art:Arth_1188 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_002487340.1 KEGG: art:Arth_1189 phosphoribosylaminoimidazole carboxylase, ATPase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_002487341.1 PFAM: GtrA family protein; KEGG: art:Arth_1190 GtrA family protein YP_002487342.1 KEGG: art:Arth_1191 hypothetical protein YP_002487343.1 PFAM: transcription factor WhiB; KEGG: art:Arth_1192 transcription factor WhiB YP_002487344.1 KEGG: art:Arth_1193 glycosyl transferase, family 2 YP_002487345.1 KEGG: art:Arth_1194 hypothetical protein YP_002487346.1 KEGG: aau:AAur_1313 hypothetical protein YP_002487347.1 KEGG: art:Arth_1196 hypothetical protein YP_002487348.1 PFAM: protein of unknown function DUF343; KEGG: aau:AAur_1315 protein of unknown function (DUF343) YP_002487349.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_002487350.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: art:Arth_1199 ErfK/YbiS/YcfS/YnhG family protein YP_002487351.1 PFAM: RDD domain containing protein; KEGG: art:Arth_1201 RDD domain containing protein YP_002487352.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: art:Arth_1202 integral membrane protein YP_002487353.1 TIGRFAM: integral membrane protein TIGR01906; KEGG: art:Arth_1203 integral membrane protein TIGR01906 YP_002487354.1 PFAM: AMP-dependent synthetase and ligase; KEGG: art:Arth_1204 AMP-dependent synthetase and ligase YP_002487355.1 PFAM: glycosyl transferase family 39; KEGG: art:Arth_1205 glycosyl transferase, family 39 YP_002487356.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: art:Arth_1206 protein of unknown function UPF0011 YP_002487357.1 PFAM: aldehyde dehydrogenase; KEGG: art:Arth_1207 succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_002487358.1 PFAM: transglutaminase; KEGG: art:Arth_1208 transglutaminase YP_002487359.1 PFAM: protein of unknown function DUF58; KEGG: art:Arth_1209 protein of unknown function DUF58 YP_002487360.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: art:Arth_1210 ATPase associated with various cellular activities, AAA_3 YP_002487361.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: aau:AAur_1335 TatD family hydrolase YP_002487362.1 PFAM: protein of unknown function DUF348; transglycosylase; G5 domain protein; KEGG: art:Arth_1212 transglycosylase YP_002487363.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002487364.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis YP_002487365.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_1215 ABC transporter YP_002487366.1 PFAM: regulatory protein TetR; KEGG: art:Arth_1216 TetR family transcriptional regulator YP_002487367.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002487368.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002487369.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: art:Arth_1219 50S ribosomal protein L25P YP_002487370.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002487371.1 PFAM: regulatory protein LuxR; KEGG: aau:AAur_1347 LuxR family transcriptional regulator YP_002487372.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: aau:AAur_1348 LuxR family transcriptional regulator YP_002487373.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: aau:AAur_1350 cysteine desulfurase YP_002487374.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: aau:AAur_1351 SUF system FeS assembly protein YP_002487375.1 KEGG: art:Arth_1240 integral membrane protein YP_002487376.1 PFAM: proteinase inhibitor I25 cystatin; KEGG: art:Arth_1241 hypothetical protein YP_002487377.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: art:Arth_1242 NmrA family protein YP_002487378.1 KEGG: art:Arth_1245 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases YP_002487379.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: art:Arth_1246 membrane-bound metal-dependent hydrolase YP_002487380.1 KEGG: art:Arth_1247 hypothetical protein YP_002487381.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_002487382.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: art:Arth_1249 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002487383.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane YP_002487384.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: art:Arth_1257 uroporphyrinogen-III C-methyltransferase YP_002487385.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: art:Arth_1258 assimilatory nitrite reductase (NAD(P)H) large subunit precursor YP_002487386.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: art:Arth_1259 assimilatory nitrite reductase (NAD(P)H) small subunit YP_002487387.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: art:Arth_1260 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_002487388.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002487389.1 catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity YP_002487390.1 PFAM: PspC domain protein; KEGG: art:Arth_0047 phage shock protein C, PspC YP_002487391.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: art:Arth_1266 assimilatory nitrate reductase (NADH) subunit beta YP_002487392.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: art:Arth_1267 assimilatory nitrate reductase (NADH) subunit alpha apoprotein YP_002487393.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1268 major facilitator superfamily MFS_1 YP_002487394.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_1269 general substrate transporter YP_002487395.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_002487396.1 KEGG: pol:Bpro_1646 hypothetical protein YP_002487397.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: art:Arth_1272 maf protein YP_002487398.1 PFAM: MMPL domain protein; KEGG: art:Arth_1275 MmpL domain protein YP_002487399.1 PFAM: regulatory protein TetR; KEGG: art:Arth_1276 TetR family transcriptional regulator YP_002487400.1 KEGG: art:Arth_1277 hypothetical protein YP_002487401.1 PFAM: sodium:dicarboxylate symporter; KEGG: art:Arth_1278 sodium:dicarboxylate symporter YP_002487402.1 PFAM: protein of unknown function DUF885; KEGG: art:Arth_1279 protein of unknown function DUF885 YP_002487403.1 KEGG: aau:AAur_1417 hypothetical protein YP_002487404.1 PFAM: carboxyl transferase; KEGG: art:Arth_1281 carboxyl transferase YP_002487405.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_1282 short chain dehydrogenase YP_002487406.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: art:Arth_1283 biotin--acetyl-CoA-carboxylase ligase YP_002487407.1 PFAM: membrane-flanked domain; KEGG: art:Arth_1284 membrane-flanked domain YP_002487408.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: art:Arth_1285 adenylate/guanylate cyclase YP_002487409.1 PFAM: Fibronectin type III domain protein; KEGG: art:Arth_1286 fibronectin, type III domain protein YP_002487410.1 PFAM: Fibronectin type III domain protein; KEGG: art:Arth_1287 fibronectin, type III domain protein YP_002487411.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: aau:AAur_1425 methanol dehydrogenase regulatory protein YP_002487412.1 PFAM: protein of unknown function DUF58; KEGG: art:Arth_1289 protein of unknown function DUF58 YP_002487413.1 PFAM: transglutaminase; KEGG: art:Arth_1290 transglutaminase YP_002487414.1 PFAM: RDD domain containing protein; KEGG: art:Arth_1291 RDD domain containing protein YP_002487415.1 PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: art:Arth_1292 protein serine/threonine phosphatases YP_002487416.1 KEGG: art:Arth_1293 FHA domain containing protein YP_002487417.1 PFAM: tyrosine protein kinase; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: art:Arth_1294 serine/threonine protein kinase YP_002487418.1 KEGG: aau:AAur_1432 hypothetical protein YP_002487419.1 PFAM: Forkhead-associated protein; cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: art:Arth_1296 FHA domain containing protein YP_002487420.1 KEGG: hypothetical protein YP_002487421.1 KEGG: art:Arth_1298 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase YP_002487422.1 PFAM: inositol monophosphatase; KEGG: art:Arth_1299 inositol-phosphate phosphatase YP_002487423.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_1301 GCN5-related N-acetyltransferase YP_002487424.1 PFAM: endoribonuclease L-PSP; KEGG: art:Arth_1302 endoribonuclease L-PSP YP_002487425.1 PFAM: response regulator receiver; KEGG: art:Arth_1303 response regulator receiver and unknown domain protein YP_002487426.1 PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: art:Arth_1304 signal transduction histidine kinase regulating citrate/malate metabolism YP_002487427.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: citrate transporter; KEGG: art:Arth_1305 citrate/H+ symporter, CitMHS family YP_002487428.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002487429.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002487430.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002487431.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_1309 LysR family transcriptional regulator YP_002487432.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_002487433.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_002487434.1 PFAM: FAD dependent oxidoreductase; KEGG: art:Arth_1312 FAD dependent oxidoreductase YP_002487435.1 catalyzes the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_002487436.1 PFAM: regulatory protein DeoR; KEGG: aau:AAur_1470 DeoR family transcriptional regulator YP_002487437.1 PFAM: hypothetical protein; KEGG: art:Arth_1315 abortive infection protein YP_002487438.1 KEGG: art:Arth_1316 hypothetical protein YP_002487439.1 KEGG: art:Arth_1317 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_002487440.1 KEGG: art:Arth_1318 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_002487441.1 KEGG: art:Arth_1324 hypothetical protein YP_002487442.1 PFAM: lipolytic protein G-D-S-L family; KEGG: art:Arth_1326 lipolytic enzyme, G-D-S-L family YP_002487443.1 PFAM: phospholipase/carboxylesterase; KEGG: art:Arth_1327 phospholipase/carboxylesterase YP_002487444.1 PFAM: RNA-binding S4 domain protein; KEGG: art:Arth_1328 RNA-binding S4 domain protein YP_002487445.1 PFAM: protein of unknown function DUF606; KEGG: art:Arth_1329 protein of unknown function DUF606 YP_002487446.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002487447.1 KEGG: art:Arth_1331 hypothetical protein YP_002487448.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: art:Arth_1332 phospholipid/glycerol acyltransferase YP_002487449.1 KEGG: art:Arth_1334 hypothetical protein YP_002487450.1 PFAM: YibE/F family protein; KEGG: art:Arth_1335 YibE/F family protein YP_002487451.1 TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase; KEGG: art:Arth_1336 TIM-barrel protein, nifR3 family YP_002487452.1 KEGG: art:Arth_1337 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002487453.1 synthesizes RNA primers at the replication forks YP_002487454.1 KEGG: art:Arth_1339 hypothetical protein YP_002487455.1 KEGG: art:Arth_1340 hypothetical protein YP_002487456.1 TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1341 drug resistance transporter Bcr/CflA subfamily YP_002487457.1 PFAM: protein of unknown function DUF1469; KEGG: art:Arth_1342 protein of unknown function DUF1469 YP_002487458.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aau:AAur_1497 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002487459.1 KEGG: art:Arth_1344 integral membrane protein YP_002487460.1 PFAM: glycosyl transferase group 1; KEGG: aau:AAur_1499 glycosyl transferase, group 1 family protein YP_002487461.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: art:Arth_1365 acyl-CoA dehydrogenase domain protein YP_002487462.1 PFAM: peptidase M23; KEGG: art:Arth_1366 peptidase M23B YP_002487463.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002487464.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002487465.1 Catalyzes the phosphorylation of UMP to UDP YP_002487466.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002487467.1 PFAM: phosphatidate cytidylyltransferase; KEGG: art:Arth_1371 phosphatidate cytidylyltransferase YP_002487468.1 KEGG: art:Arth_1372 hypothetical protein YP_002487469.1 KEGG: aau:AAur_1509 hypothetical protein YP_002487470.1 PFAM: Na+/solute symporter; KEGG: art:Arth_1373 Na+/solute symporter YP_002487471.1 KEGG: art:Arth_1374 hypothetical protein YP_002487472.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: art:Arth_1375 response regulator receiver protein YP_002487473.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: art:Arth_1376 signal transduction histidine kinase, LytS YP_002487474.1 PFAM: protein of unknown function DUF485; KEGG: art:Arth_1377 protein of unknown function DUF485 YP_002487475.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: aau:AAur_1515 sodium:solute symporter family protein YP_002487476.1 KEGG: art:Arth_1379 hypothetical protein YP_002487477.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_1380 AsnC family transcriptional regulator YP_002487478.1 KEGG: art:Arth_1381 pyruvate dehydrogenase (acetyl-transferring); TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component YP_002487479.1 PFAM: transketolase; transketolase domain protein; KEGG: art:Arth_1382 transketolase, central region YP_002487480.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: art:Arth_1383 catalytic domain of components of various dehydrogenase complexes YP_002487481.1 PFAM: regulatory protein TetR; KEGG: art:Arth_1384 TetR family transcriptional regulator YP_002487482.1 PFAM: carboxyl transferase; KEGG: art:Arth_1385 propionyl-CoA carboxylase YP_002487483.1 PFAM: biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: art:Arth_1386 carbamoyl-phosphate synthase L chain, ATP-binding YP_002487484.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: art:Arth_1387 butyryl-CoA dehydrogenase YP_002487485.1 KEGG: art:Arth_1388 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase subunit alpha; PFAM: coenzyme A transferase YP_002487486.1 KEGG: art:Arth_1389 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase subunit beta; PFAM: coenzyme A transferase YP_002487487.1 PFAM: MaoC domain protein dehydratase; KEGG: art:Arth_1390 MaoC domain protein dehydratase YP_002487488.1 PFAM: HpcH/HpaI aldolase; KEGG: art:Arth_1391 HpcH/HpaI aldolase YP_002487489.1 PFAM: protein of unknown function DUF1222; KEGG: art:Arth_1398 protein of unknown function DUF1222 YP_002487490.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002487491.1 PFAM: peptidase M50; KEGG: art:Arth_1400 peptidase M50 YP_002487492.1 KEGG: art:Arth_1401 hypothetical protein YP_002487493.1 KEGG: art:Arth_1402 hypothetical protein YP_002487494.1 PFAM: YCII-related; KEGG: art:Arth_1403 YCII-related protein YP_002487495.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002487496.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_1405 GCN5-related N-acetyltransferase YP_002487497.1 KEGG: art:Arth_1406 hypothetical protein YP_002487498.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002487499.1 PFAM: protein of unknown function DUF81; KEGG: aau:AAur_1554 integral membrane protein YP_002487500.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: art:Arth_1409 pyridoxal-dependent decarboxylase YP_002487501.1 PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: aau:AAur_1555 streptomycin 6-kinase YP_002487502.1 KEGG: art:Arth_1412 hypothetical protein YP_002487503.1 PFAM: protein of unknown function DUF150; KEGG: art:Arth_1413 protein of unknown function DUF150 YP_002487504.1 KEGG: art:Arth_1414 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; SMART: RNA binding S1 domain protein YP_002487505.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002487506.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002487507.1 KEGG: art:Arth_1418 hypothetical protein YP_002487508.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: art:Arth_1419 CMP/dCMP deaminase, zinc-binding YP_002487509.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: aau:AAur_1881 thioredoxin YP_002487510.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: aau:AAur_1564 aspartate aminotransferase YP_002487511.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002487512.1 KEGG: art:Arth_1425 hypothetical protein YP_002487513.1 KEGG: art:Arth_1426 hypothetical protein YP_002487514.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; KEGG: art:Arth_1430 FMN adenylyltransferase / riboflavin kinase YP_002487515.1 TIGRFAM: tryptophan 2,3-dioxygenase; PFAM: tryptophan 23-dioxygenase; KEGG: art:Arth_1431 tryptophan 2,3-dioxygenase YP_002487516.1 PFAM: aminotransferase class V; KEGG: art:Arth_1432 kynureninase YP_002487517.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002487518.1 KEGG: art:Arth_1434 polyribonucleotide nucleotidyltransferase; TIGRFAM: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_002487519.1 PFAM: peptidase M16 domain protein; KEGG: art:Arth_1435 peptidase M16 domain protein YP_002487520.1 KEGG: aau:AAur_1572 hypothetical protein YP_002487521.1 PFAM: thiamineS protein; KEGG: art:Arth_1439 thiamineS protein YP_002487522.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_002487523.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: art:Arth_1443 oxidoreductase, molybdopterin binding YP_002487524.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: art:Arth_1444 molybdopterin molybdochelatase YP_002487525.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_002487526.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: art:Arth_1446 molybdopterin adenylyltransferase YP_002487527.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: aau:AAur_1581 molybdopterin converting factor, subunit 2 YP_002487528.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002487529.1 KEGG: art:Arth_1449 tetratricopeptide TPR_2 repeat protein YP_002487530.1 KEGG: art:Arth_1450 protein of unknown function DUF1624 YP_002487531.1 KEGG: art:Arth_1451 hypothetical protein YP_002487532.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002487533.1 PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: art:Arth_1453 beta-lactamase YP_002487534.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: art:Arth_1454 cell divisionFtsK/SpoIIIE YP_002487535.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: art:Arth_1455 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002487536.1 PFAM: damage inducible protein CinA; KEGG: art:Arth_1456 competence/damage-inducible protein CinA YP_002487537.1 PFAM: helix-turn-helix domain protein; KEGG: art:Arth_1457 XRE family transcriptional regulator YP_002487538.1 PFAM: regulatory protein MarR; KEGG: art:Arth_1458 MarR family transcriptional regulator YP_002487539.1 KEGG: art:Arth_1459 hypothetical protein YP_002487540.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002487541.1 PFAM: regulatory protein RecX; KEGG: art:Arth_1461 regulatory protein RecX YP_002487542.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002487543.1 KEGG: aau:AAur_1597 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_002487544.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002487545.1 PFAM: methyltransferase small; KEGG: art:Arth_1465 methyltransferase small YP_002487546.1 TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: aau:AAur_1600 GTP-binding protein YP_002487547.1 SMART: helicase c2; DEAD-like helicases; KEGG: art:Arth_1467 helicase C2 YP_002487548.1 Represses a number of genes involved in the response to DNA damage YP_002487549.1 PFAM: peptidoglycan-binding LysM; KEGG: art:Arth_1469 peptidoglycan-binding LysM YP_002487550.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002487551.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002487552.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002487553.1 KEGG: aau:AAur_1607 hypothetical protein YP_002487554.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis YP_002487555.1 KEGG: art:Arth_1474 hypothetical protein YP_002487556.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1475 major facilitator superfamily MFS_1 YP_002487557.1 KEGG: art:Arth_1476 hypothetical protein YP_002487558.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: art:Arth_1477 bacterial translation initiation factor 3 (bIF-3) YP_002487559.1 PFAM: ribosomal protein L35; KEGG: art:Arth_1478 LSU ribosomal protein L35P YP_002487560.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002487561.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: art:Arth_1480 tRNA/rRNA methyltransferase (SpoU) YP_002487562.1 KEGG: art:Arth_1481 hypothetical protein YP_002487563.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1483 major facilitator superfamily MFS_1 YP_002487564.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_1484 NUDIX hydrolase YP_002487565.1 PFAM: radical SAM protein; KEGG: art:Arth_1485 radical SAM protein YP_002487566.1 PFAM: protein of unknown function DUF541; KEGG: art:Arth_1487 protein of unknown function DUF541 YP_002487567.1 KEGG: art:Arth_1488 hypothetical protein YP_002487568.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: art:Arth_1489 phenylalanyl-tRNA synthetase, subunit alpha YP_002487569.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002487570.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: art:Arth_1491 4'-phosphopantetheinyl transferase YP_002487571.1 PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: art:Arth_1492 peptidase M1, membrane alanine aminopeptidase YP_002487572.1 TIGRFAM: amino acid adenylation protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; transferase; phosphopantetheine-binding; KEGG: art:Arth_1493 non-ribosomal peptide synthetase YP_002487573.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_1494 alcohol dehydrogenase, zinc-binding domain protein YP_002487574.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002487575.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002487576.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002487577.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_002487578.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_002487579.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_002487580.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002487581.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002487582.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: art:Arth_1504 pyridoxamine 5'-phosphate oxidase YP_002487583.1 KEGG: art:Arth_1505 hypothetical protein YP_002487584.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: art:Arth_1506 methylated-DNA--protein-cysteine methyltransferase YP_002487585.1 PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; AlkA domain protein; SMART: HhH-GPD family protein; KEGG: art:Arth_1507 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada YP_002487586.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: art:Arth_1508 DNA-3-methyladenine glycosylase YP_002487587.1 KEGG: art:Arth_1511 ATP-dependent DNA helicase YP_002487588.1 KEGG: aau:AAur_1643 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein YP_002487589.1 KEGG: art:Arth_1513 hypothetical protein YP_002487590.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: haloacid dehalogenase; KEGG: art:Arth_1514 HAD-superfamily hydrolase, subfamily IIA YP_002487591.1 KEGG: aau:AAur_1651 hypothetical protein YP_002487592.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: art:Arth_1516 hemolysin A YP_002487593.1 catalyzes the phosphorylation of NAD to NADP YP_002487594.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: art:Arth_1518 DNA repair protein RecN YP_002487595.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002487596.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_1520 NUDIX hydrolase YP_002487597.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase; KEGG: art:Arth_1521 tyrosine recombinase XerD YP_002487598.1 KEGG: aau:AAur_1658 hypothetical protein YP_002487599.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_1522 NUDIX hydrolase YP_002487600.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_002487601.1 TIGRFAM: methylisocitrate lyase; KEGG: aau:AAur_1661 methylisocitrate lyase YP_002487602.1 PFAM: MmgE/PrpD family protein; KEGG: aau:AAur_1662 2-methylcitrate dehydratase YP_002487603.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_1526 GntR family transcriptional regulator YP_002487604.1 PFAM: AMP-dependent synthetase and ligase; KEGG: art:Arth_1527 AMP-dependent synthetase and ligase YP_002487605.1 PFAM: response regulator receiver; KEGG: art:Arth_1528 response regulator receiver and unknown domain protein YP_002487606.1 PFAM: ATP-binding region ATPase domain protein; KEGG: art:Arth_1529 signal transduction histidine kinase regulating citrate/malate metabolism YP_002487607.1 PFAM: sodium:dicarboxylate symporter; KEGG: art:Arth_1530 sodium:dicarboxylate symporter YP_002487608.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: art:Arth_1531 cobyrinic acid a,c-diamide synthase YP_002487609.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: art:Arth_1532 condensin subunit ScpA YP_002487610.1 PFAM: chromosome segregation and condensation protein ScpB; KEGG: art:Arth_1533 transcriptional regulator YP_002487611.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: art:Arth_1534 pseudouridine synthase, Rsu YP_002487612.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_002487613.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: art:Arth_1536 cytidylate kinase YP_002487614.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: art:Arth_1537 phospholipid/glycerol acyltransferase YP_002487615.1 synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002487617.1 PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: art:Arth_1539 DNA-formamidopyrimidine glycosylase YP_002487618.1 TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage H-protein; KEGG: art:Arth_1540 glycine cleavage system protein H YP_002487619.1 PFAM: Forkhead-associated protein; KEGG: art:Arth_1541 FHA domain containing protein YP_002487620.1 PFAM: regulatory protein MerR; KEGG: art:Arth_1542 MerR family transcriptional regulator YP_002487621.1 PFAM: protein of unknown function DUF151; KEGG: art:Arth_1543 protein of unknown function DUF151 YP_002487622.1 SMART: regulatory protein MerR; KEGG: aau:AAur_1684 hypothetical protein YP_002487623.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: art:Arth_1545 cobyrinic acid a,c-diamide synthase YP_002487624.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_002487625.1 PFAM: AMP-dependent synthetase and ligase; KEGG: art:Arth_1547 AMP-dependent synthetase and ligase YP_002487626.1 TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: art:Arth_1548 glucokinase YP_002487627.1 KEGG: art:Arth_1549 hypothetical protein YP_002487628.1 KEGG: art:Arth_1550 esterase/lipase YP_002487629.1 KEGG: art:Arth_1551 esterase/lipase YP_002487630.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: art:Arth_1552 phospholipid/glycerol acyltransferase YP_002487631.1 KEGG: art:Arth_1553 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II YP_002487632.1 PFAM: tyrosine protein kinase; PASTA domain containing protein; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: art:Arth_1554 serine/threonine protein kinase YP_002487633.1 PFAM: peptidoglycan-binding LysM; lytic transglycosylase catalytic; KEGG: art:Arth_1555 peptidoglycan-binding LysM YP_002487634.1 KEGG: art:Arth_1556 transcriptional regulator YP_002487635.1 PFAM: polyprenyl synthetase; KEGG: art:Arth_1557 polyprenyl synthetase YP_002487636.1 KEGG: art:Arth_1558 hypothetical protein YP_002487637.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: art:Arth_1559 DNA-directed DNA polymerase YP_002487638.1 KEGG: art:Arth_1560 membrane protein YP_002487639.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_002487640.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: art:Arth_1562 S-adenosyl-methyltransferase MraW YP_002487641.1 KEGG: art:Arth_1563 hypothetical protein YP_002487642.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: art:Arth_1564 peptidoglycan glycosyltransferase YP_002487643.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: art:Arth_1565 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_002487644.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: art:Arth_1566 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_002487645.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002487646.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: art:Arth_1568 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_002487647.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: art:Arth_1569 cell division protein FtsW YP_002487648.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002487649.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002487650.1 PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: art:Arth_1572 polypeptide-transport-associated domain protein, FtsQ-type YP_002487651.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: art:Arth_1573 cell division protein FtsZ YP_002487652.1 PFAM: protein of unknown function DUF152; KEGG: art:Arth_1574 protein of unknown function DUF152 YP_002487653.1 PFAM: alanine racemase domain protein; KEGG: aau:AAur_1715 alanine racemase N-terminal domain-containing protein YP_002487654.1 PFAM: protein of unknown function DUF552; KEGG: art:Arth_1576 protein of unknown function DUF552 YP_002487655.1 PFAM: protein of unknown function YGGT; KEGG: art:Arth_1577 hypothetical protein YP_002487656.1 PFAM: DivIVA family protein; KEGG: art:Arth_1578 DivIVA family protein YP_002487657.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002487658.1 KEGG: art:Arth_1580 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase YP_002487659.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_002487660.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: art:Arth_1583 flavin reductase domain protein, FMN-binding YP_002487661.1 KEGG: art:Arth_1584 hypothetical protein YP_002487662.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002487663.1 PFAM: ATP-cone domain protein; KEGG: art:Arth_1586 ribonucleotide reductase regulator NrdR-like protein YP_002487664.1 PFAM: ROK family protein; KEGG: art:Arth_1588 polyphosphate glucokinase YP_002487665.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: aau:AAur_1728 methionine aminopeptidase, type I YP_002487666.1 KEGG: art:Arth_1590 hypothetical protein YP_002487667.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002487668.1 TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: art:Arth_1592 glutamine synthetase YP_002487669.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_002487670.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_1734 acetyltransferase, GNAT family protein YP_002487671.1 TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: art:Arth_1600 glutamine synthetase YP_002487672.1 PFAM: RDD domain containing protein; KEGG: aau:AAur_1745 transRDD family protein YP_002487673.1 KEGG: art:Arth_1602 hypothetical protein YP_002487674.1 KEGG: art:Arth_1603 integral membrane protein YP_002487675.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002487676.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system protein H YP_002487677.1 PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; KEGG: art:Arth_1606 serine/threonine protein kinase YP_002487678.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: art:Arth_1607 hypothetical protein YP_002487679.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; KEGG: art:Arth_1608 peptidase S41 YP_002487680.1 PFAM: OsmC family protein; KEGG: aau:AAur_1752 osmotically inducible protein (OsmC) YP_002487681.1 KEGG: art:Arth_1610 hypothetical protein YP_002487682.1 KEGG: art:Arth_1611 2-oxoglutarate dehydrogenase E2 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_002487683.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002487684.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: art:Arth_1613 leucyl aminopeptidase YP_002487685.1 PFAM: protein of unknown function DUF75; KEGG: art:Arth_1614 protein of unknown function DUF75 YP_002487686.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1615 major facilitator superfamily MFS_1 YP_002487687.1 KEGG: art:Arth_1616 hypothetical protein YP_002487688.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: art:Arth_1617 RNA polymerase, sigma 28 subunit YP_002487689.1 KEGG: art:Arth_1618 hypothetical protein YP_002487690.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002487691.1 PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: art:Arth_1620 peptidase M48, Ste24p YP_002487692.1 PFAM: Penicillinase repressor; KEGG: art:Arth_1621 CopY family transcriptional regulator YP_002487693.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: art:Arth_1622 cytochrome bd ubiquinol oxidase subunit I YP_002487694.1 KEGG: art:Arth_1623 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_002487695.1 KEGG: art:Arth_1624 ABC transporter; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA YP_002487696.1 KEGG: art:Arth_1626 hypothetical protein YP_002487697.1 KEGG: cmi:CMM_0281 acetyltransferase YP_002487698.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002487699.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: art:Arth_1628 GCN5-related N-acetyltransferase YP_002487700.1 KEGG: art:Arth_1629 hypothetical protein YP_002487701.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PglZ domain protein; KEGG: art:Arth_1630 type I phosphodiesterase/nucleotide pyrophosphatase YP_002487702.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002487703.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: art:Arth_0370 HNH nuclease YP_002487704.1 KEGG: art:Arth_1633 hypothetical protein YP_002487705.1 KEGG: art:Arth_1635 membrane protein YP_002487706.1 KEGG: art:Arth_1636 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_002487707.1 KEGG: art:Arth_1637 hypothetical protein YP_002487708.1 KEGG: art:Arth_1638 hypothetical protein YP_002487709.1 KEGG: art:Arth_1639 hypothetical protein YP_002487710.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: art:Arth_1640 TrkA-N domain protein YP_002487711.1 PFAM: TrkA-N domain protein; KEGG: aau:AAur_1786 trk-type K+ transporter, NAD-binding component YP_002487712.1 KEGG: art:Arth_1642 transporter YP_002487713.1 PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; KEGG: art:Arth_1643 deoxyribonuclease/rho motif-related TRAM YP_002487714.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002487715.1 KEGG: aau:AAur_1791 hypothetical protein YP_002487716.1 KEGG: art:Arth_1647 hypothetical protein YP_002487717.1 PFAM: aldo/keto reductase; KEGG: art:Arth_1649 aldo/keto reductase YP_002487718.1 PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: art:Arth_1650 inosine/uridine-preferring nucleoside hydrolase YP_002487719.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: krh:KRH_15030 mycothiol reductase YP_002487720.1 KEGG: art:Arth_1651 signal transduction histidine kinase, LytS YP_002487721.1 PFAM: cobalt transporter; KEGG: art:Arth_1652 cobalt transporter YP_002487722.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_1653 ABC transporter YP_002487723.1 PFAM: enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: art:Arth_1654 3-hydroxyacyl-CoA dehydrogenase YP_002487724.1 KEGG: art:Arth_1655 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_002487725.1 PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: art:Arth_1656 3'-5' exonuclease YP_002487726.1 KEGG: aau:AAur_1798 hypothetical protein YP_002487727.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: art:Arth_1658 threonine aldolase YP_002487728.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_1659 short-chain dehydrogenase/reductase SDR YP_002487729.1 KEGG: art:Arth_1660 hypothetical protein YP_002487730.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; KEGG: art:Arth_1661 methionine-R-sulfoxide reductase YP_002487731.1 KEGG: art:Arth_1662 hypothetical protein YP_002487732.1 KEGG: art:Arth_1663 secreted protein YP_002487733.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: art:Arth_1664 YbaK/EbsC protein YP_002487734.1 PFAM: Fe-S metabolism associated SufE; KEGG: aau:AAur_1806 SufE protein YP_002487735.1 PFAM: rhodanese; KEGG: aau:AAur_1807 thiosulfate sulfurtransferase YP_002487736.1 PFAM: AFG1-family ATPase; KEGG: art:Arth_1667 AFG1-family ATPase YP_002487737.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transporter; xanthine/uracil/vitamin C permease; KEGG: aau:AAur_1809 benzoate membrane transporter YP_002487738.1 KEGG: aau:AAur_1810 hypothetical protein YP_002487739.1 KEGG: art:Arth_1669 hypothetical protein YP_002487740.1 KEGG: art:Arth_1670 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_002487741.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: art:Arth_1671 methionyl-tRNA formyltransferase YP_002487742.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: art:Arth_1672 Fmu (Sun) domain protein YP_002487743.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: art:Arth_1673 ribulose-phosphate 3-epimerase YP_002487744.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: aau:AAur_1825 nicotinamide mononucleotide transporter PnuC YP_002487745.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: art:Arth_1674 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_002487746.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002487747.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: art:Arth_1676 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002487748.1 PFAM: GTP cyclohydrolase II; KEGG: art:Arth_1677 GTP cyclohydrolase II YP_002487749.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002487750.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_002487751.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_002487752.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002487753.1 KEGG: art:Arth_1682 hypothetical protein YP_002487754.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: aau:AAur_1834 phosphoribosyl-AMP cyclohydrolase YP_002487755.1 KEGG: art:Arth_1684 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: anthranilate synthase component I domain protein; chorismate binding-like YP_002487756.1 KEGG: art:Arth_1685 hypothetical protein YP_002487757.1 KEGG: art:Arth_1686 hypothetical protein YP_002487758.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002487759.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002487760.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002487761.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: art:Arth_1690 prolipoprotein diacylglyceryl transferase YP_002487762.1 PFAM: glutamine amidotransferase class-II; glutamate synthase subunit alpha domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: art:Arth_1691 glutamate synthase (ferredoxin) YP_002487763.1 glutamate synthase is composed of subunits alpha and beta; subunit beta is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the subunit alpha, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_002487764.1 KEGG: art:Arth_1693 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta YP_002487765.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: aau:AAur_1845 two-component system response regulator YP_002487766.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mgi:Mflv_4505 short-chain dehydrogenase/reductase SDR YP_002487767.1 PFAM: EAL domain protein; KEGG: ace:Acel_0529 diguanylate phosphodiesterase YP_002487768.1 KEGG: fre:Franean1_1096 hypothetical protein YP_002487769.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rsa:RSal33209_1281 RNA polymerase sigma factor YP_002487770.1 KEGG: cmi:CMM_0834 hypothetical protein YP_002487771.1 KEGG: rha:RHA1_ro03416 hypothetical protein YP_002487772.1 PFAM: heat shock protein Hsp20; KEGG: art:Arth_3661 heat shock protein HSP20 YP_002487773.1 PFAM: ANTAR domain protein; KEGG: aau:AAur_0208 ANTAR domain-containing protein YP_002487774.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: art:Arth_3460 signal transduction histidine kinase YP_002487775.1 PFAM: response regulator receiver; KEGG: art:Arth_2136 two component LuxR family transcriptional regulator YP_002487777.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002487778.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase subunit beta; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: art:Arth_1876 K+-transporting ATPase subunit beta YP_002487779.1 KEGG: art:Arth_1877 potassium-transporting ATPase, C subunit; TIGRFAM: potassium ABC transporter ATPase; PFAM: K transporting ATPase KdpC subunit YP_002487780.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: art:Arth_1878 osmosensitive K+ channel signal transduction histidine kinase YP_002487781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rsa:RSal33209_0917 two-component response regulator YP_002487782.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: kra:Krad_2711 helix-turn-helix domain-containing protein YP_002487783.1 PFAM: extracellular solute-binding protein family 1; KEGG: kra:Krad_0303 extracellular solute-binding protein YP_002487784.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: kra:Krad_0302 binding-protein-dependent transport systems inner membrane component YP_002487785.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_6355 sugar ABC transporter permease YP_002487786.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: msm:MSMEG_3605 sorbitol dehydrogenase YP_002487787.1 PFAM: PfkB domain protein; KEGG: art:Arth_0109 PfkB domain protein YP_002487788.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: csa:Csal_0643 mannitol dehydrogenase-like protein YP_002487790.1 KEGG: LOC771631; hypothetical protein LOC771631 YP_002487792.1 forms a tetramer composed of 2 subunit alphas and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_002487793.1 PFAM: NAD(P) transhydrogenase subunit beta; KEGG: art:Arth_1815 NAD(P) transhydrogenase subunit beta YP_002487794.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: nca:Noca_3393 pterin-4-alpha-carbinolamine dehydratase YP_002487795.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: aau:AAur_1855 flavin reductase-like domain-containing protein YP_002487796.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate YP_002487797.1 PFAM: Domain of unknown function DUF1852; KEGG: aau:AAur_1857 hypothetical protein YP_002487798.1 PFAM: regulatory protein LysR; KEGG: aau:AAur_1858 LysR family transcriptional regulator YP_002487800.1 PFAM: coagulation factor 5/8 type domain protein; Ig domain protein; KEGG: sma:SAV_1026 secreted protein YP_002487801.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: cms:CMS_1140 hypothetical protein YP_002487802.1 KEGG: art:Arth_2160 hypothetical protein YP_002487803.1 PFAM: catalase domain protein; KEGG: art:Arth_1094 catalase YP_002487804.1 KEGG: aau:AAur_pTC20233 hypothetical protein YP_002487805.1 KEGG: art:Arth_0922 hypothetical protein YP_002487806.1 transports degraded pectin products into the bacterial cell YP_002487807.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: aau:AAur_1903 L-threonine 3-dehydrogenase YP_002487808.1 PFAM: type III effector Hrp-dependent outers; KEGG: aau:AAur_1904 YgbK domain-containing protein YP_002487809.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: aau:AAur_1905 ribulose bisphosphate carboxylase, large subunit,-like protein YP_002487810.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: aau:AAur_1907 GntR family transcriptional regulator YP_002487811.1 PFAM: DoxX family protein; KEGG: sgr:SGR_824 hypothetical protein YP_002487812.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: art:Arth_3102 4'-phosphopantetheinyl transferase YP_002487813.1 PFAM: ABC transporter; KEGG: art:Arth_3101 ABC-2 type transporter YP_002487814.1 KEGG: art:Arth_3100 daunorubicin resistance ABC transporter ATPase; TIGRFAM: daunorubicin resistance ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_002487815.1 PFAM: MbtH domain protein; KEGG: art:Arth_3099 MbtH domain protein YP_002487816.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: art:Arth_3098 amino acid adenylation domain YP_002487817.1 KEGG: art:Arth_3097 hypothetical protein YP_002487818.1 PFAM: glycoside hydrolase clan GH-D; KEGG: art:Arth_3388 glycoside hydrolase, clan GH-D YP_002487819.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3387 extracellular solute-binding protein, family 1 YP_002487820.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3386 binding-protein-dependent transport systems inner membrane component YP_002487821.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3385 binding-protein-dependent transport systems inner membrane component YP_002487822.1 PFAM: semialdehyde dehydrogenase NAD - binding; oxidoreductase; KEGG: art:Arth_3384 oxidoreductase YP_002487823.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_3383 transcriptional regulator, LacI family YP_002487824.1 PFAM: aldo/keto reductase; KEGG: sth:STH1707 oxidoreductase YP_002487825.1 PFAM: regulatory protein TetR; KEGG: fre:Franean1_3149 TetR family transcriptional regulator YP_002487826.1 KEGG: art:Arth_0065 membrane-bound lytic murein transglycosylase B-like protein YP_002487827.1 KEGG: art:Arth_0240 hypothetical protein YP_002487828.1 KEGG: art:Arth_1072 hypothetical protein YP_002487829.1 PFAM: band 7 protein; KEGG: art:Arth_1073 band 7 protein YP_002487830.1 PFAM: FAD linked oxidase; Berberine/berberine domain protein; KEGG: sen:SACE_7272 FAD linked oxidase-like YP_002487831.1 PFAM: sodium/hydrogen exchanger; KEGG: aau:AAur_2006 Na+/H+ antiporter YP_002487832.1 PFAM: SNARE associated Golgi protein; KEGG: art:Arth_0238 DedA family protein YP_002487833.1 PFAM: protein of unknown function DUF1206; KEGG: rha:RHA1_ro04194 hypothetical protein YP_002487834.1 KEGG: fal:FRAAL2458 HTH-type transcriptional regulator YP_002487835.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nca:Noca_2508 short-chain dehydrogenase/reductase SDR YP_002487836.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mjl:Mjls_3416 alcohol dehydrogenase YP_002487837.1 KEGG: art:Arth_1986 magnesium chelatase YP_002487838.1 SMART: von Willebrand factor A; KEGG: art:Arth_1987 von Willebrand factor, type A YP_002487839.1 PFAM: Amylo-alpha-16-glucosidase; KEGG: art:Arth_1962 amylo-alpha-1,6-glucosidase YP_002487840.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: aau:AAur_2019 riboflavin biosynthesis protein RibD YP_002487841.1 PFAM: GTP cyclohydrolase II; acyl-CoA dehydrogenase type 2 domain; KEGG: kra:Krad_0125 GTP cyclohydrolase II YP_002487842.1 PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: aau:AAur_2033 5'-3' exonuclease YP_002487843.1 PFAM: aminotransferase class I and II; KEGG: bur:Bcep18194_A5690 aminotransferase, class I and II YP_002487844.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: bbt:BBta_4835 ABC transporter ATP-binding protein YP_002487845.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bbt:BBta_4834 ABC transporter (permease protein) YP_002487846.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bbt:BBta_4833 ABC transporter (permease protein) YP_002487847.1 PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_4832 ABC transporter (substrate binding protein) YP_002487848.1 PFAM: FAD linked oxidase; KEGG: art:Arth_0748 FAD linked oxidase YP_002487849.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rsa:RSal33209_2269 FMN reductase YP_002487850.1 KEGG: scl:sce6658 hypothetical protein YP_002487851.1 KEGG: art:Arth_1095 mucin-associated surface protein YP_002487852.1 KEGG: art:Arth_2026 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases YP_002487853.1 PFAM: dienelactone hydrolase; KEGG: art:Arth_2029 dienelactone hydrolase YP_002487854.1 TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: art:Arth_2031 hypothetical protein YP_002487855.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: art:Arth_2032 translation factor SUA5 YP_002487856.1 KEGG: art:Arth_1873 hypothetical protein YP_002487857.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: art:Arth_1879 two component transcriptional regulator, winged helix family YP_002487858.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: art:Arth_2043 3-demethylubiquinone-9 3-methyltransferase YP_002487859.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_2044 methyltransferase type 12 YP_002487860.1 PFAM: regulatory protein LuxR; KEGG: art:Arth_2045 LuxR family transcriptional regulator YP_002487861.1 KEGG: aau:AAur_1137 hypothetical protein YP_002487862.1 KEGG: art:Arth_2056 hypothetical protein YP_002487863.1 PFAM: phosphate transporter; KEGG: art:Arth_2057 phosphate transporter YP_002487864.1 KEGG: aau:AAur_2061 hypothetical protein YP_002487865.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: art:Arth_2061 bifunctional deaminase-reductase domain protein YP_002487866.1 PFAM: thioesterase superfamily protein; KEGG: aau:AAur_2064 thioesterase family protein YP_002487867.1 KEGG: art:Arth_2063 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2 YP_002487868.1 KEGG: art:Arth_2064 hypothetical protein YP_002487869.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002487870.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_2067 GCN5-related N-acetyltransferase YP_002487871.1 PFAM: protein of unknown function UPF0029; KEGG: art:Arth_2068 protein of unknown function UPF0029 YP_002487872.1 KEGG: art:Arth_3474 ATP-dependent Na+ efflux pump YP_002487873.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_3473 ABC transporter YP_002487874.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; in Mycobacterium tuberculosis the C-terminal UPF0157 domain appears to be necessary for proper folding of the N-terminal domain YP_002487875.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-subunit beta is inserted between the strands, where it probes for the presence of a lesion YP_002487876.1 PFAM: integral membrane protein TerC; KEGG: art:Arth_2071 integral membrane protein TerC YP_002487877.1 PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_2074 major facilitator transporter YP_002487878.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_2072 alpha/beta hydrolase fold YP_002487879.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_2073 GCN5-related N-acetyltransferase YP_002487880.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: art:Arth_2074 DEAD/DEAH box helicase YP_002487881.1 PFAM: methyltransferase small; methyltransferase type 11; methyltransferase type 12; KEGG: aau:AAur_2078 trans-aconitate 2-methyltransferase YP_002487882.1 PFAM: ABC transporter transmembrane protein; ABC transporter related; SMART: ATPase AAA; KEGG: art:Arth_2076 ABC transporter related YP_002487883.1 PFAM: ABC transporter transmembrane protein; ABC transporter related; SMART: ATPase AAA; KEGG: art:Arth_2077 ABC transporter related YP_002487884.1 PFAM: regulatory protein GntR HTH; KEGG: art:Arth_2078 GntR family transcriptional regulator YP_002487885.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrsubunit betas scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002487886.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: art:Arth_2080 haloacid dehalogenase domain protein hydrolase YP_002487887.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: art:Arth_2081 phospholipid/glycerol acyltransferase YP_002487888.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002487889.1 PFAM: conserved hypothetical protein; KEGG: art:Arth_2083 hypothetical protein YP_002487890.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: art:Arth_2084 hypothetical protein YP_002487891.1 PFAM: protein of unknown function DUF199; KEGG: aau:AAur_2086 hypothetical protein YP_002487892.1 PFAM: manganese and iron superoxide dismutase; KEGG: art:Arth_2086 superoxide dismutase YP_002487893.1 KEGG: art:Arth_2087 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_002487894.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002487895.1 PFAM: triosephosphate isomerase; KEGG: art:Arth_2089 triose-phosphate isomerase YP_002487896.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: art:Arth_2090 preprotein translocase subunit SecG YP_002487897.1 KEGG: art:Arth_2091 electron transporter YP_002487898.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: art:Arth_2092 6-phosphogluconolactonase YP_002487899.1 KEGG: art:Arth_2093 oxppcycle protein YP_002487900.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002487901.1 PFAM: phosphoglucose isomerase (PGI); KEGG: art:Arth_2095 glucose-6-phosphate isomerase YP_002487902.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate YP_002487903.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002487904.1 converts protoheme IX and farnesyl diphosphate to heme O YP_002487905.1 PFAM: carbonic anhydrase; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: aau:AAur_3421 sulfate transporter family protein YP_002487906.1 PFAM: cytochrome oxidase assembly; KEGG: art:Arth_2099 cytochrome oxidase assembly YP_002487907.1 PFAM: ABC transporter; KEGG: art:Arth_2100 ABC-2 type transporter YP_002487908.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2101 ABC transporter YP_002487909.1 PFAM: regulatory protein ArsR; KEGG: art:Arth_2102 transcriptional regulator YP_002487910.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: aau:AAur_2104 FeS assembly protein SufB YP_002487911.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: art:Arth_2104 FeS assembly protein SufD YP_002487912.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: art:Arth_2105 Rieske (2Fe-2S) domain protein YP_002487913.1 KEGG: aau:AAur_2107 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA YP_002487914.1 PFAM: protein of unknown function DUF59; KEGG: aau:AAur_2108 hypothetical protein YP_002487915.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: art:Arth_2108 protein of unknown function, zinc metallopeptidase YP_002487916.1 PFAM: AMP-dependent synthetase and ligase; KEGG: art:Arth_2109 AMP-dependent synthetase and ligase YP_002487917.1 KEGG: art:Arth_2110 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_002487918.1 PFAM: cobalt transporter; KEGG: aau:AAur_2111 cobalt transporter YP_002487919.1 PFAM: SMC domain protein; ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2112 ABC transporter YP_002487920.1 PFAM: BioY protein; KEGG: art:Arth_2113 BioY protein YP_002487921.1 KEGG: aau:AAur_4054 hypothetical protein YP_002487922.1 PFAM: radical SAM protein; KEGG: kra:Krad_0827 radical SAM domain-containing protein YP_002487923.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2114 ABC transporter YP_002487925.1 KEGG: mgi:Mflv_5595 hypothetical protein YP_002487927.1 PFAM: regulatory protein MerR; KEGG: sen:SACE_2793 hypothetical protein YP_002487928.1 KEGG: cmi:CMM_0395 hypothetical protein YP_002487929.1 KEGG: art:Arth_0453 hypothetical protein YP_002487930.1 KEGG: rha:RHA1_ro00968 esterase YP_002487931.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: kra:Krad_1959 helix-turn-helix type 11 domain-containing protein YP_002487932.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: art:Arth_2115 YbaK/prolyl-tRNA synthetase associated region YP_002487933.1 KEGG: art:Arth_2116 hypothetical protein YP_002487934.1 KEGG: art:Arth_2117 hypothetical protein YP_002487935.1 KEGG: art:Arth_2118 hypothetical protein YP_002487936.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: art:Arth_2119 3-oxoacyl-[acyl-carrier-protein] reductase YP_002487937.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: art:Arth_2122 short chain dehydrogenase YP_002487938.1 KEGG: art:Arth_2123 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase type 3 YP_002487939.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_2125 ABC transporter ATP-binding protein YP_002487940.1 PFAM: protein of unknown function DUF81; KEGG: aau:AAur_2126 integral membrane protein YP_002487941.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: art:Arth_2126 tRNA/rRNA methyltransferase (SpoU) YP_002487942.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002487943.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: art:Arth_2128 biotin/lipoate A/B protein ligase YP_002487944.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: art:Arth_2129 Aminopeptidase G. metallo peptidase. MEROPS family M01 YP_002487945.1 PFAM: conserved hypothetical protein; KEGG: art:Arth_2130 conserved hypothetical protein 698 YP_002487946.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: art:Arth_2131 protein of unknown function DUF404 YP_002487947.1 PFAM: protein of unknown function DUF403; KEGG: art:Arth_2132 protein of unknown function DUF403 YP_002487948.1 PFAM: transglutaminase; transglutaminase domain protein; KEGG: art:Arth_2133 transglutaminase, N-terminal domain protein YP_002487949.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: art:Arth_2134 hypothetical protein YP_002487950.1 KEGG: aau:AAur_2135 oxidoreductase YP_002487951.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_002487952.1 TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: art:Arth_2141 glycogen synthase YP_002487953.1 PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: art:Arth_2142 acyl-CoA oxidase domain protein YP_002487954.1 PFAM: regulatory protein TetR; KEGG: art:Arth_2143 TetR family transcriptional regulator YP_002487955.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002487956.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002487957.1 PFAM: MaoC domain protein dehydratase; KEGG: art:Arth_2146 MaoC domain protein dehydratase YP_002487958.1 KEGG: art:Arth_2147 membrane protein-like protein YP_002487959.1 PFAM: beta-lactamase; KEGG: art:Arth_2148 beta-lactamase YP_002487960.1 KEGG: art:Arth_2149 glutathione S-transferase YP_002487961.1 KEGG: art:Arth_2150 integral membrane protein YP_002487962.1 KEGG: art:Arth_0240 hypothetical protein YP_002487963.1 PFAM: glycosyl transferase family 9; KEGG: art:Arth_0359 glycosyl transferase, family 9 YP_002487964.1 PFAM: glycosyl transferase family 9; KEGG: aau:AAur_0110 heptosyltransferase family protein YP_002487966.1 PFAM: protein of unknown function DUF805; KEGG: aau:AAur_0967 protein of unknown function (DUF805) YP_002487967.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_1973 alpha/beta hydrolase fold YP_002487968.1 TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter related; KEGG: art:Arth_0906 excinuclease ABC subunit A YP_002487969.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: art:Arth_2162 hypothetical protein YP_002487970.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: art:Arth_2163 acyl-CoA dehydrogenase, type 2-like protein YP_002487971.1 KEGG: art:Arth_2164 hypothetical protein YP_002487972.1 KEGG: art:Arth_2165 hypothetical protein YP_002487973.1 PFAM: aldo/keto reductase; KEGG: art:Arth_2166 aldo/keto reductase YP_002487974.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002487975.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002487976.1 PFAM: protein of unknown function DUF75; KEGG: art:Arth_2169 protein of unknown function DUF75 YP_002487977.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: art:Arth_2170 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_002487978.1 PFAM: peptidase M50; KEGG: art:Arth_2171 peptidase M50 YP_002487979.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: art:Arth_2172 tRNA (adenine-N(1)-)-methyltransferase YP_002487980.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: art:Arth_2173 vesicle-fusing ATPase YP_002487981.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: art:Arth_2174 protein of unknown function DUF245 domain protein YP_002487982.1 PFAM: protein of unknown function DUF797; KEGG: art:Arth_2175 protein of unknown function DUF797 YP_002487983.1 PFAM: 20S proteasome A and subunit betas; KEGG: art:Arth_2176 Bacterial proteasome, beta component. threonine peptidase. MEROPS family T01B YP_002487984.1 PFAM: 20S proteasome A and subunit betas; KEGG: art:Arth_2177 20S proteasome, A and subunit betas YP_002487985.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: art:Arth_2178 protein of unknown function DUF245 domain protein YP_002487986.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: art:Arth_2179 peptidylprolyl isomerase, FKBP-type YP_002487987.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: art:Arth_2180 peptidylprolyl isomerase, FKBP-type YP_002487988.1 KEGG: art:Arth_2181 transcripitonal regulator YP_002487989.1 KEGG: art:Arth_2182 hypothetical protein YP_002487990.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: art:Arth_2183 sec-independent translocation protein MttA/Hcf106 YP_002487991.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: art:Arth_2184 sec-independent protein translocase TatC YP_002487992.1 PFAM: helicase; type III restriction protein res subunit; DEAD/DEAH box helicase; DSH domain protein; SMART: DEAD-like helicases; KEGG: art:Arth_2185 DEAD/DEAH box helicase domain protein YP_002487993.1 PFAM: amidohydrolase; KEGG: art:Arth_2186 amidohydrolase 3 YP_002487994.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_2187 dolichyl-phosphate beta-D-mannosyltransferase YP_002487995.1 KEGG: art:Arth_2188 hypothetical protein YP_002487996.1 PFAM: band 7 protein; KEGG: aau:AAur_2190 SPFH domain-containing protein YP_002487997.1 PFAM: protein of unknown function DUF107; KEGG: art:Arth_2190 protein of unknown function DUF107 YP_002487998.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: aau:AAur_2192 rRNA methyltransferase YP_002487999.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002488000.1 KEGG: art:Arth_2195 hypothetical protein YP_002488001.1 PFAM: monooxygenase FAD-binding; KEGG: art:Arth_2196 monooxygenase, FAD-binding YP_002488002.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_2197 hypothetical protein YP_002488003.1 PFAM: chalcone and stilbene synthase domain protein; FAE1/type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: art:Arth_2198 naringenin-chalcone synthase YP_002488004.1 KEGG: aau:AAur_0136 hypothetical protein YP_002488006.1 KEGG: aau:AAur_2204 hypothetical protein YP_002488007.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_2207 AsnC family transcriptional regulator YP_002488008.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002488009.1 PFAM: cytochrome C oxidase subunit III; KEGG: aau:AAur_2207 cytochrome C oxidase subunit III YP_002488010.1 PFAM: cytochrome C class I; KEGG: art:Arth_2210 cytochrome c, class I YP_002488011.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: art:Arth_2211 Rieske (2Fe-2S) domain protein YP_002488012.1 PFAM: cytochrome b/b6 domain; KEGG: art:Arth_2212 cytochrome b/b6-like protein YP_002488013.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: art:Arth_2213 transcriptional regulator, GntR family YP_002488014.1 PFAM: phosphoryl transfer system HPr; KEGG: art:Arth_2214 phosphocarrier, HPr family YP_002488015.1 KEGG: art:Arth_2215 hypothetical protein YP_002488016.1 KEGG: art:Arth_2216 cytochrome-c oxidase; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_002488017.1 TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: art:Arth_2217 cytochrome C oxidase subunit II YP_002488018.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: art:Arth_2218 iron-sulfur cluster assembly accessory protein YP_002488019.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: art:Arth_2219 peptidase M20 YP_002488020.1 KEGG: art:Arth_2220 hypothetical protein YP_002488021.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_002488022.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_2222 lysophospholipase YP_002488023.1 PFAM: alpha/beta hydrolase fold; KEGG: aau:AAur_2222 hydrolase alpha/beta fold family protein YP_002488024.1 KEGG: art:Arth_2224 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_002488025.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002488026.1 KEGG: art:Arth_2226 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_002488027.1 PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: art:Arth_2227 endothelin-converting enzyme 1 YP_002488028.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: art:Arth_2228 cell envelope-related transcriptional attenuator YP_002488029.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002488030.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: art:Arth_2230 CBS domain containing protein YP_002488031.1 PFAM: protein of unknown function UPF0054; KEGG: art:Arth_2231 hypothetical protein YP_002488032.1 PFAM: PhoH family protein; KEGG: art:Arth_2232 PhoH family protein YP_002488033.1 KEGG: art:Arth_2233 hypothetical protein YP_002488034.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002488035.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: art:Arth_2235 chaperone protein DnaJ YP_002488036.1 negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002488037.1 KEGG: art:Arth_2237 hypothetical protein YP_002488038.1 KEGG: art:Arth_2238 hypothetical protein YP_002488039.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002488040.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002488041.1 KEGG: art:Arth_2241 hypothetical protein YP_002488042.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002488043.1 TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta; KEGG: art:Arth_2243 DNA polymerase III subunit delta YP_002488044.1 PFAM: ComEC/Rec2-related protein; KEGG: art:Arth_2244 ComEC/Rec2-related protein YP_002488045.1 KEGG: art:Arth_2245 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Competence protein ComEA helix-hairpin-helix region; SMART: DNA-binding protein YP_002488046.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: aau:AAur_2245 uncharacterized DegV family protein YP_002488047.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002488048.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: art:Arth_2248 glycerol kinase YP_002488049.1 PFAM: major intrinsic protein; KEGG: art:Arth_2249 major intrinsic protein YP_002488050.1 PFAM: FAD dependent oxidoreductase; KEGG: art:Arth_2250 FAD dependent oxidoreductase YP_002488051.1 PFAM: sugar-binding domain protein; KEGG: art:Arth_2251 DeoR family transcriptional regulator YP_002488052.1 PFAM: aldo/keto reductase; KEGG: art:Arth_2252 2,5-didehydrogluconate reductase YP_002488053.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_2253 alpha/beta hydrolase fold YP_002488054.1 PFAM: glycosyl transferase group 1; KEGG: aau:AAur_2253 glycosyl transferase, group 1 family protein YP_002488055.1 KEGG: art:Arth_2255 primosomal protein N' (replication factor Y) (superfamily II helicase) YP_002488056.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002488057.1 KEGG: art:Arth_2257 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_002488058.1 TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; KEGG: art:Arth_2258 DNA-directed RNA polymerase, omega subunit YP_002488059.1 Essential for recycling GMP and indirectly, cGMP YP_002488060.1 KEGG: art:Arth_2260 integration host factor IHF YP_002488061.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002488062.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002488063.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002488064.1 KEGG: art:Arth_2264 hypothetical protein YP_002488065.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002488066.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002488067.1 PFAM: phosphoribosyltransferase; KEGG: art:Arth_2267 uracil phosphoribosyltransferase YP_002488068.1 KEGG: aau:AAur_2271 integral membrane protein YP_002488069.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: art:Arth_2269 NusB antitermination factor YP_002488070.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002488071.1 KEGG: art:Arth_2271 hypothetical protein YP_002488072.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002488073.1 PFAM: shikimate kinase; KEGG: art:Arth_2273 shikimate kinase YP_002488074.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002488075.1 PFAM: shikimate/quinate 5-dehydrogenase; shikimate dehydrogenase substrate binding domain protein; KEGG: art:Arth_2275 shikimate dehydrogenase YP_002488076.1 PFAM: aminodeoxychorismate lyase; KEGG: aau:AAur_2279 uncharacterized Bcr YceG family protein YP_002488077.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: art:Arth_2277 Holliday junction resolvase YqgF YP_002488078.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002488079.1 KEGG: art:Arth_2279 secreted protein YP_002488080.1 KEGG: art:Arth_2280 secreted protein YP_002488081.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002488082.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: art:Arth_2283 recombination factor protein RarA YP_002488083.1 KEGG: art:Arth_2284 hypothetical protein YP_002488084.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_2290 GCN5-related N-acetyltransferase YP_002488085.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002488086.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002488087.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: art:Arth_2294 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_002488088.1 PFAM: protein of unknown function DUF349; KEGG: art:Arth_2295 protein of unknown function DUF349 YP_002488089.1 KEGG: art:Arth_2296 hypothetical protein YP_002488090.1 KEGG: art:Arth_2297 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_002488091.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002488092.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_002488093.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: aau:AAur_2296 preprotein translocase, YajC subunit YP_002488094.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002488095.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002488096.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_002488097.1 PFAM: protein of unknown function DUF28; KEGG: aau:AAur_2300 hypothetical protein YP_002488098.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_002488099.1 PFAM: Mur ligase middle domain protein; domain of unknown function DUF1727; KEGG: art:Arth_2306 domain of unknown function DUF1727 YP_002488100.1 PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: aau:AAur_2303 cobyric acid synthase CobQ YP_002488101.1 KEGG: aau:AAur_2304 hypothetical protein YP_002488102.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: art:Arth_2313 peptidyl-dipeptidase DCP YP_002488103.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_002488104.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: art:Arth_2315 CDP-diacylglycerol inositol 3-phosphatidyltransferase YP_002488105.1 PFAM: histidine triad (HIT) protein; KEGG: aau:AAur_2308 histidine triad protein ( HIT domain) YP_002488106.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002488107.1 KEGG: art:Arth_2318 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_002488108.1 KEGG: art:Arth_2319 hypothetical protein YP_002488109.1 KEGG: aau:AAur_2314 hypothetical protein YP_002488110.1 PFAM: chorismate mutase; KEGG: art:Arth_2321 chorismate mutase YP_002488111.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_2322 glyoxalase/bleomycin resistance protein/dioxygenase YP_002488112.1 PFAM: protein of unknown function DUF159; KEGG: art:Arth_2323 protein of unknown function DUF159 YP_002488113.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: art:Arth_2324 glutaredoxin-like protein YP_002488114.1 KEGG: art:Arth_2325 hypothetical protein YP_002488115.1 PFAM: ABC transporter; KEGG: aau:AAur_2838 hypothetical protein YP_002488116.1 PFAM: transcriptional regulator PadR family protein; KEGG: aau:AAur_2839 transcriptional regulator YP_002488117.1 KEGG: art:Arth_2327 hypothetical protein YP_002488118.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: art:Arth_2328 hypothetical protein YP_002488119.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_2308 NUDIX hydrolase YP_002488120.1 PFAM: Domain of unknown function DUF1918; KEGG: art:Arth_2334 hypothetical protein YP_002488121.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: sen:SACE_5374 phosphoesterase YP_002488122.1 PFAM: protein of unknown function DUF1810; KEGG: art:Arth_2066 hypothetical protein YP_002488123.1 KEGG: aau:AAur_2325 hypothetical protein YP_002488124.1 KEGG: aau:AAur_2022 DnaK suppressor protein YP_002488125.1 KEGG: rsa:RSal33209_0725 membrane-bound transglycosylase YP_002488126.1 KEGG: aau:AAur_4153 hypothetical protein YP_002488127.1 PFAM: peptidoglycan-binding LysM; KEGG: aau:AAur_4070 LysM domain-containing protein YP_002488128.1 PFAM: protein of unknown function UPF0061; KEGG: aau:AAur_3205 uncharacterized ACR, YdiU/UPF0061 family protein YP_002488129.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_002488130.1 KEGG: art:Arth_0938 hypothetical protein YP_002488131.1 PFAM: UspA domain protein; KEGG: art:Arth_2049 UspA domain protein YP_002488132.1 KEGG: art:Arth_3961 hypothetical protein YP_002488133.1 PFAM: UspA domain protein; KEGG: art:Arth_2137 UspA domain protein YP_002488134.1 PFAM: UspA domain protein; KEGG: art:Arth_2137 UspA domain protein YP_002488135.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: art:Arth_2136 two component transcriptional regulator, LuxR family YP_002488136.1 KEGG: art:Arth_4069 hypothetical protein YP_002488137.1 PFAM: UspA domain protein; KEGG: art:Arth_2049 UspA domain protein YP_002488138.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: art:Arth_3471 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_002488139.1 TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: art:Arth_0339 phosphoenolpyruvate synthase YP_002488140.1 PFAM: UspA domain protein; KEGG: art:Arth_3457 UspA domain protein YP_002488141.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: art:Arth_0340 heavy metal translocating P-type ATPase YP_002488142.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: aau:AAur_0924 hypothetical protein YP_002488143.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: art:Arth_2134 hypothetical protein YP_002488144.1 KEGG: nca:Noca_0129 hypothetical protein YP_002488145.1 PFAM: transcription activator effector binding; KEGG: art:Arth_0754 transcription activator, effector binding YP_002488146.1 PFAM: protein of unknown function DUF1003; KEGG: aau:AAur_1849 hypothetical protein YP_002488147.1 KEGG: art:Arth_2332 hypothetical protein YP_002488148.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_3962 alcohol dehydrogenase GroES domain protein YP_002488149.1 PFAM: band 7 protein; KEGG: kra:Krad_2104 band 7 protein YP_002488150.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_0484 IclR family transcripitonal regulator YP_002488151.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: art:Arth_0483 NAD-dependent epimerase/dehydratase YP_002488152.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_0482 extracellular solute-binding protein, family 1 YP_002488153.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_0481 binding-protein-dependent transport systems inner membrane component YP_002488154.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_0480 binding-protein-dependent transport systems inner membrane component YP_002488155.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: art:Arth_0479 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein YP_002488156.1 KEGG: art:Arth_0478 conserved hypothetical alanine-rich protein YP_002488157.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: kra:Krad_3614 alcohol dehydrogenase YP_002488158.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: rsa:RSal33209_2500 cell division protein YP_002488159.1 PFAM: phosphoglycerate mutase; KEGG: art:Arth_1955 phosphoglycerate mutase YP_002488160.1 KEGG: art:Arth_1954 hypothetical protein YP_002488161.1 KEGG: art:Arth_1953 hypothetical protein YP_002488162.1 KEGG: aau:AAur_3116 hypothetical protein YP_002488163.1 KEGG: art:Arth_0452 hypothetical protein YP_002488165.1 PFAM: PspA/IM30 family protein; KEGG: art:Arth_0699 phage shock protein A, PspA YP_002488166.1 SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_4541 helix-turn-helix domain-containing protein YP_002488167.1 PFAM: major facilitator superfamily MFS_1; KEGG: xfa:XF1765 drug:proton antiporter YP_002488168.1 PFAM: cupin; KEGG: kra:Krad_2716 cupin 2 domain-containing protein YP_002488169.1 PFAM: aldo/keto reductase; KEGG: kra:Krad_2708 2,5-didehydrogluconate reductase YP_002488170.1 KEGG: fre:Franean1_4542 hypothetical protein YP_002488171.1 PFAM: carboxymuconolactone decarboxylase; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase YP_002488172.1 KEGG: art:Arth_0697 hypothetical protein YP_002488173.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_002488174.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002488175.1 TIGRFAM: NrdI protein; PFAM: NrdI family protein; KEGG: art:Arth_2357 NrdI protein YP_002488176.1 TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: art:Arth_2358 ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit YP_002488177.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_2360 cyclopropane-fatty-acyl-phospholipid synthase YP_002488178.1 PFAM: protein of unknown function DUF1365; KEGG: art:Arth_2361 protein of unknown function DUF1365 YP_002488179.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: art:Arth_2362 amine oxidase YP_002488180.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_2363 LysR family transcriptional regulator YP_002488181.1 KEGG: art:Arth_2365 hypothetical protein YP_002488182.1 PFAM: methylenetetrahydrofolate reductase; KEGG: art:Arth_2367 deleted entry YP_002488183.1 KEGG: art:Arth_2369 hypothetical protein YP_002488184.1 SMART: von Willebrand factor A; KEGG: art:Arth_2370 von Willebrand factor, type A YP_002488185.1 PFAM: von Willebrand factor A; KEGG: art:Arth_2371 von Willebrand factor, type A YP_002488186.1 KEGG: art:Arth_2372 hypothetical protein YP_002488187.1 PFAM: protein of unknown function DUF58; KEGG: art:Arth_2373 protein of unknown function DUF58 YP_002488188.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: art:Arth_2374 ATPase associated with various cellular activities, AAA_3 YP_002488189.1 KEGG: art:Arth_2375 hypothetical protein YP_002488190.1 PFAM: ROK family protein; KEGG: art:Arth_2379 ROK family protein YP_002488191.1 PFAM: methyltransferase small; methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_2380 methyltransferase small YP_002488192.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: art:Arth_2381 oxidoreductase YP_002488193.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_2157 cyclopropane-fatty-acyl-phospholipid synthase YP_002488194.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: art:Arth_2383 iojap-like protein YP_002488195.1 KEGG: art:Arth_2384 hypothetical protein YP_002488196.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002488197.1 KEGG: aau:AAur_2362 hypothetical protein YP_002488198.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002488199.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002488200.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002488201.1 involved in the peptidyltransferase reaction during translation YP_002488202.1 PFAM: ribosomal protein L21; KEGG: art:Arth_2391 50S ribosomal protein L21 YP_002488203.1 catalyzes the formation of 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate with the subsequent phosphorylation to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate and catalyzes the hydrolysis of 4-amino-5-aminomethyl-2-methylpyrimidine to form hydroxy-pyrimidine YP_002488204.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: art:Arth_2393 ribonuclease, Rne/Rng family YP_002488205.1 PFAM: Vitamin K epoxide reductase; KEGG: art:Arth_2394 vitamin K epoxide reductase YP_002488206.1 PFAM: nucleoside diphosphate kinase; KEGG: aau:AAur_2371 nucleoside diphosphate kinase YP_002488207.1 KEGG: aau:AAur_2372 integral membrane protein YP_002488208.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: art:Arth_2397 FolC bifunctional protein YP_002488209.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_002488210.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: art:Arth_2399 endonuclease/exonuclease/phosphatase YP_002488211.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_2400 short-chain dehydrogenase/reductase SDR YP_002488212.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002488213.1 KEGG: art:Arth_2402 hypothetical protein YP_002488214.1 binds and unfolds substrates as part of the ClpXP protease YP_002488215.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002488216.1 PFAM: peptidase S14 ClpP; KEGG: art:Arth_2405 endopeptidase Clp YP_002488217.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002488218.1 PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: art:Arth_2407 formamidopyrimidine-DNA glycolase YP_002488219.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_002488220.1 KEGG: art:Arth_2409 hypothetical protein YP_002488221.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: art:Arth_2410 Aminopeptidase N. metallo peptidase. MEROPS family M01 YP_002488222.1 PFAM: OsmC family protein; KEGG: aau:AAur_2390 OsmC-like protein YP_002488223.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: art:Arth_2412 NAD-dependent epimerase/dehydratase YP_002488224.1 PFAM: MscS Mechanosensitive ion channel; KEGG: art:Arth_2413 MscS mechanosensitive ion channel YP_002488225.1 PFAM: globin; KEGG: aau:AAur_2392 hypothetical protein YP_002488226.1 KEGG: art:Arth_2416 hypothetical protein YP_002488227.1 PFAM: acyl-CoA thioesterase; KEGG: art:Arth_2417 palmitoyl-CoA hydrolase YP_002488228.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_002488229.1 KEGG: art:Arth_2419 hypothetical protein YP_002488230.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: art:Arth_2420 single-strand binding protein YP_002488231.1 PFAM: ROK family protein; KEGG: aau:AAur_3705 xylose repressor YP_002488232.1 catalyzes the interconversion of D-xylose to D-xylulose YP_002488233.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: art:Arth_2431 xylulokinase YP_002488234.1 PFAM: xylose isomerase; KEGG: art:Arth_2423 xylose isomerase domain protein TIM barrel YP_002488235.1 PFAM: protein of unknown function DUF993; KEGG: art:Arth_2424 protein of unknown function DUF993 YP_002488236.1 PFAM: oxidoreductase; KEGG: art:Arth_2425 oxidoreductase YP_002488237.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_2426 transcriptional regulator, LacI family YP_002488238.1 KEGG: aau:AAur_3697 lipase/esterase YP_002488239.1 PFAM: aldose 1-epimerase; KEGG: art:Arth_2432 aldose 1-epimerase YP_002488240.1 PFAM: DNA alkylation repair enzyme; KEGG: art:Arth_2433 hypothetical protein YP_002488241.1 KEGG: art:Arth_2434 hypothetical protein YP_002488242.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_002488243.1 KEGG: art:Arth_2436 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_002488244.1 KEGG: art:Arth_2437 hypothetical protein YP_002488245.1 KEGG: aau:AAur_2410 hypothetical protein YP_002488246.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_002488247.1 PFAM: TspO/MBR family protein; KEGG: art:Arth_0769 TspO and MBR like proteins YP_002488248.1 PFAM: protein of unknown function DUF328; KEGG: aau:AAur_2412 hypothetical protein YP_002488249.1 PFAM: protein of unknown function DUF164; KEGG: art:Arth_2443 protein of unknown function DUF164 YP_002488250.1 PFAM: protein of unknown function DUF34; KEGG: art:Arth_2444 protein of unknown function DUF34 YP_002488251.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; KEGG: art:Arth_2445 peptide methionine sulfoxide reductase YP_002488252.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: aau:AAur_2416 cysteine synthase A YP_002488253.1 TIGRFAM: serine O-acetyltransferase; KEGG: art:Arth_2447 serine O-acetyltransferase YP_002488254.1 KEGG: aau:AAur_2419 6-phosphogluconate dehydrogenase, decarboxylating; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding YP_002488255.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_2450 GntR family transcriptional regulator YP_002488256.1 KEGG: art:Arth_2460 hypothetical protein YP_002488257.1 PFAM: silent information regulator protein Sir2; KEGG: art:Arth_2461 silent information regulator protein Sir2 YP_002488258.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: art:Arth_2462 redoxin domain protein YP_002488259.1 KEGG: art:Arth_2463 hypothetical protein YP_002488260.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_002488261.1 KEGG: art:Arth_2465 hypothetical protein YP_002488262.1 KEGG: aau:AAur_2435 [acyl-carrier-protein] S-malonyltransferase YP_002488263.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002488264.1 carries the fatty acid chain in fatty acid biosynthesis YP_002488265.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: art:Arth_2469 3-oxoacyl-[acyl-carrier-protein] synthase II YP_002488266.1 KEGG: art:Arth_2470 hypothetical protein YP_002488267.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: aau:AAur_2440 tyrosine recombinase XerC YP_002488268.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: art:Arth_2472 DNA protecting protein DprA YP_002488269.1 PFAM: protein of unknown function UPF0102; KEGG: art:Arth_2474 protein of unknown function UPF0102 YP_002488270.1 KEGG: art:Arth_2475 hypothetical protein YP_002488271.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002488272.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: art:Arth_2477 Signal peptidase I. serine peptidase. MEROPS family S26A YP_002488273.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: art:Arth_2478 Signal peptidase I. serine peptidase. MEROPS family S26A YP_002488274.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002488275.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002488276.1 Essential for efficient processing of 16S rRNA YP_002488277.1 KEGG: art:Arth_2482 hypothetical protein YP_002488278.1 PFAM: ribosomal protein S16; KEGG: aau:AAur_2452 ribosomal protein S16 YP_002488279.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_2485 glyoxalase/bleomycin resistance protein/dioxygenase YP_002488280.1 PFAM: amidohydrolase; amidohydrolase; KEGG: art:Arth_2486 amidohydrolase YP_002488281.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002488282.1 KEGG: art:Arth_2488 hypothetical protein YP_002488283.1 KEGG: art:Arth_2489 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_002488284.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002488285.1 PFAM: nitrogen regulatory protein P-II; KEGG: aau:AAur_2460 nitrogen regulatory protein P-II YP_002488286.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: art:Arth_2492 ammonium transporter YP_002488287.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_2493 major facilitator superfamily MFS_1 YP_002488288.1 KEGG: art:Arth_2494 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_002488289.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: art:Arth_2495 condensin subunit Smc YP_002488290.1 KEGG: aau:AAur_2466 hypothetical protein YP_002488291.1 PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_2467 major facilitator transporter YP_002488292.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002488293.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: aau:AAur_2470 ribonuclease III (RNase III) YP_002488294.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002488297.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002488298.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: aau:AAur_2474 aminotransferase classes I and II protein YP_002488299.1 KEGG: art:Arth_2508 hypothetical protein YP_002488300.1 TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: art:Arth_2509 methyltransferase YP_002488301.1 PFAM: helicase; nucleic acid binding OB-fold tRNA/helicase-type; type III restriction protein res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases; KEGG: art:Arth_2510 DEAD/DEAH box helicase YP_002488302.1 PFAM: Dak phosphatase; KEGG: art:Arth_2511 Dak phosphatase YP_002488303.1 KEGG: art:Arth_2512 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein YP_002488304.1 KEGG: art:Arth_2513 secreted protein YP_002488305.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002488306.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: art:Arth_2515 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) YP_002488307.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: art:Arth_2516 phospholipid/glycerol acyltransferase YP_002488308.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002488309.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_002488310.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_002488311.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: aau:AAur_2487 IclR family transcriptional regulator YP_002488312.1 PFAM: protein of unknown function DUF1697; KEGG: aau:AAur_2489 protein of unknown function (DUF1697) YP_002488313.1 PFAM: GTP-binding protein HSR1-related; KEGG: art:Arth_2522 ABC transporter YP_002488314.1 KEGG: art:Arth_2523 ABC transporter YP_002488315.1 KEGG: art:Arth_2524 hypothetical protein YP_002488316.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: art:Arth_2525 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_002488317.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002488318.1 PFAM: fumarylacetoacetate hydrolase; KEGG: aau:AAur_2495 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_002488319.1 PFAM: beta-lactamase; KEGG: aau:AAur_2496 metallo-beta-lactamase superfamily protein YP_002488321.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: art:Arth_2529 branched chain amino acid aminotransferase YP_002488322.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002488323.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: aau:AAur_2499 signal transduction histidine kinase YP_002488324.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: aau:AAur_2500 two-component system response regulator YP_002488325.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_2501 ABC transporter ATP-binding protein YP_002488326.1 PFAM: protein of unknown function DUF214; KEGG: aau:AAur_2502 ABC transporter permease YP_002488327.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); KEGG: art:Arth_2533 methionyl-tRNA synthetase YP_002488328.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2534 ABC transporter YP_002488329.1 PFAM: protein of unknown function DUF214; KEGG: art:Arth_2535 protein of unknown function DUF214 YP_002488330.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_002488331.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002488332.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002488333.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_002488334.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002488335.1 KEGG: art:Arth_2542 hypothetical protein YP_002488336.1 PFAM: regulatory protein MarR; KEGG: art:Arth_2545 MarR family transcriptional regulator YP_002488337.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: art:Arth_2546 redoxin domain protein YP_002488338.1 PFAM: beta-Ig-H3/fasciclin; KEGG: art:Arth_2547 beta-Ig-H3/fasciclin YP_002488339.1 PFAM: extracellular solute-binding protein family 5; KEGG: art:Arth_2548 extracellular solute-binding protein, family 5 YP_002488340.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_002488341.1 PFAM: acriflavin resistance protein; KEGG: art:Arth_2550 acriflavin resistance protein YP_002488342.1 PFAM: Luciferase-like monooxygenase; KEGG: aau:AAur_2522 luciferase-like monooxygenase YP_002488343.1 PFAM: regulatory protein MarR; KEGG: art:Arth_2552 MarR family transcriptional regulator YP_002488344.1 PFAM: transglutaminase; KEGG: art:Arth_2553 transglutaminase YP_002488345.1 KEGG: art:Arth_0916 hypothetical protein YP_002488346.1 PFAM: protein of unknown function DUF1684; KEGG: art:Arth_2554 protein of unknown function DUF1684 YP_002488347.1 PFAM: GtrA family protein; KEGG: art:Arth_2556 GtrA family protein YP_002488348.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: art:Arth_2557 aminotransferase, class V YP_002488349.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002488350.1 KEGG: aau:AAur_2533 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002488351.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002488352.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_2561 NUDIX hydrolase YP_002488353.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_2563 amino acid permease-associated region YP_002488354.1 KEGG: art:Arth_2567 hydrolase protein YP_002488355.1 PFAM: phosphoribosyltransferase; KEGG: aau:AAur_2543 phosphoribosyl transferase domain-containing protein YP_002488356.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_2568 general substrate transporter YP_002488357.1 PFAM: regulatory protein IclR; KEGG: art:Arth_2571 IclR family transcripitonal regulator YP_002488358.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_2572 major facilitator superfamily MFS_1 YP_002488359.1 PFAM: SMC domain protein; KEGG: art:Arth_2573 SMC domain protein YP_002488360.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: art:Arth_2574 exodeoxyribonuclease I subunit D YP_002488361.1 PFAM: major intrinsic protein; KEGG: art:Arth_2575 major intrinsic protein YP_002488362.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: art:Arth_2576 ADP-ribosylation/crystallin J1 YP_002488363.1 KEGG: art:Arth_2577 hypothetical protein YP_002488364.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: art:Arth_2578 exonuclease, RNase T and DNA polymerase III YP_002488365.1 PFAM: SNARE associated Golgi protein; KEGG: art:Arth_2579 hypothetical protein YP_002488366.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: aau:AAur_2569 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_002488367.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_002488368.1 KEGG: aau:AAur_2571 hypothetical protein YP_002488369.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002488370.1 KEGG: art:Arth_2584 hypothetical protein YP_002488371.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: art:Arth_2585 ATP-dependent Clp protease adaptor protein ClpS YP_002488372.1 TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: art:Arth_2586 nicotinate phosphoribosyltransferase YP_002488373.1 PFAM: isochorismatase hydrolase; KEGG: art:Arth_2587 isochorismatase hydrolase YP_002488374.1 PFAM: type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: art:Arth_2588 type III restriction enzyme, res subunit YP_002488375.1 KEGG: art:Arth_2589 hypothetical protein YP_002488376.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_002488377.1 KEGG: art:Arth_2591 hypothetical protein YP_002488378.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2592 ABC transporter YP_002488379.1 KEGG: kra:Krad_1342 hypothetical protein YP_002488380.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: art:Arth_2593 NADH:flavin oxidoreductase/NADH oxidase YP_002488381.1 KEGG: art:Arth_2594 thioredoxin domain YP_002488382.1 KEGG: art:Arth_2595 hypothetical protein YP_002488383.1 PFAM: protein of unknown function UPF0118; KEGG: aau:AAur_2585 permease YP_002488384.1 KEGG: art:Arth_2597 hypothetical protein YP_002488385.1 KEGG: art:Arth_2598 ATP/GTP-binding protein, doubtful CDS YP_002488386.1 PFAM: protein of unknown function DUF91; KEGG: art:Arth_2599 hypothetical protein YP_002488387.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: art:Arth_2600 cold-shock DNA-binding protein family YP_002488388.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: art:Arth_2601 protein of unknown function DUF470 YP_002488389.1 PFAM: esterase; KEGG: aau:AAur_2592 esterase family protein YP_002488390.1 KEGG: art:Arth_2603 hypothetical protein YP_002488391.1 PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: art:Arth_2604 H+-transporting two-sector ATPase, delta/epsilon subunit YP_002488392.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002488393.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002488394.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002488395.1 TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: art:Arth_2608 ATP synthase F1 subunit delta YP_002488396.1 TIGRFAM: ATP synthase F0 subunit beta; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: aau:AAur_2598 ATP synthase F0 B subunit YP_002488397.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: aau:AAur_2599 ATP synthase subunit C YP_002488398.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002488399.1 KEGG: art:Arth_2612 hypothetical protein YP_002488400.1 KEGG: art:Arth_2613 hypothetical protein YP_002488401.1 PFAM: glycosyl transferase family 4; KEGG: art:Arth_2614 glycosyl transferase, family 4 YP_002488402.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_2615 glycosyl transferase, family 2 YP_002488403.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: art:Arth_2616 glycosyl transferase, WecB/TagA/CpsF family YP_002488404.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: aau:AAur_2605 SUA5/YciO/YrdC/YwlC family protein YP_002488405.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; methyltransferase type 11; KEGG: aau:AAur_2606 HemK family modification methylase YP_002488406.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002488407.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002488408.1 KEGG: aau:AAur_2610 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_002488409.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002488410.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002488411.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: art:Arth_2624 diaminopimelate decarboxylase YP_002488412.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002488413.1 KEGG: art:Arth_2626 hypothetical protein YP_002488414.1 PFAM: ApbE family lipoprotein; KEGG: art:Arth_2627 hypothetical protein YP_002488415.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: art:Arth_2628 oxidoreductase FAD/NAD(P)-binding domain protein YP_002488416.1 PFAM: peptidase M4 thermolysin; peptidase M4 thermolysin; KEGG: art:Arth_2629 peptidase M4, thermolysin YP_002488417.1 KEGG: art:Arth_2630 hypothetical protein YP_002488418.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: aau:AAur_2621 AraC family transcriptional regulator YP_002488420.1 KEGG: art:Arth_2632 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase; helicase-associated domain protein; protein of unknown function DUF1605; SMART: ATPase AAA; DEAD-like helicases YP_002488421.1 KEGG: sco:SCO6564 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_002488422.1 PFAM: histidine triad (HIT) protein; KEGG: art:Arth_2633 histidine triad (HIT) protein YP_002488423.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_2634 alcohol dehydrogenase GroES domain protein YP_002488424.1 PFAM: rhodanese; KEGG: art:Arth_2635 3-mercaptopyruvate sulfurtransferase YP_002488425.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: art:Arth_2636 pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_002488426.1 KEGG: aau:AAur_2627 hypothetical protein YP_002488427.1 PFAM: ferric-uptake regulator; KEGG: art:Arth_2638 zinc uptake regulator, Fur family YP_002488428.1 PFAM: transporter permease; ABC-3 protein; KEGG: art:Arth_2639 ABC transporter YP_002488429.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2640 ABC transporter YP_002488430.1 PFAM: periplasmic solute binding protein; KEGG: art:Arth_2641 periplasmic solute binding protein YP_002488431.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: art:Arth_2642 protein of unknown function DUF21 YP_002488432.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: art:Arth_2643 protein of unknown function DUF21 YP_002488433.1 kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth YP_002488434.1 KEGG: art:Arth_2646 hypothetical protein YP_002488435.1 KEGG: art:Arth_2648 hypothetical protein YP_002488436.1 PFAM: transcriptional regulator PadR family protein; KEGG: art:Arth_2649 transcriptional regulator, PadR family YP_002488437.1 TIGRFAM: anti-sigma factor; KEGG: aau:AAur_2640 anti-sigma factor YP_002488438.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_2651 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002488439.1 PFAM: DoxX family protein; KEGG: art:Arth_2652 DoxX family protein YP_002488440.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002488441.1 PFAM: GTPase EngC; KEGG: art:Arth_2654 GTPase EngC YP_002488442.1 KEGG: art:Arth_2655 histidinol-phosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase YP_002488443.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: art:Arth_2656 cysteine desulfurase YP_002488444.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_2657 methyltransferase type 11 YP_002488445.1 PFAM: iron dependent repressor; FeoA family protein; KEGG: art:Arth_2658 iron (metal) dependent repressor, DtxR family YP_002488446.1 PFAM: Camphor resistance CrcB protein; KEGG: art:Arth_2659 camphor resistance protein CrcB YP_002488447.1 PFAM: Camphor resistance CrcB protein; KEGG: art:Arth_2660 camphor resistance protein CrcB YP_002488448.1 KEGG: art:Arth_2661 hypothetical protein YP_002488449.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: art:Arth_2309 peptidase S1 and S6, chymotrypsin/Hap YP_002488450.1 PFAM: acyltransferase 3; KEGG: art:Arth_3189 acyltransferase 3 YP_002488451.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002488452.1 PFAM: peptidase M23; KEGG: aau:AAur_2654 M23 peptidase domain-containing protein YP_002488453.1 PFAM: protein of unknown function DUF214; KEGG: art:Arth_2664 cell division protein FtsX YP_002488454.1 KEGG: art:Arth_2665 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase AAA YP_002488455.1 TIGRFAM: peptide chain release factor 2; PFAM: class I peptide chain release factor; PCRF domain protein; KEGG: art:Arth_2666 bacterial peptide chain release factor 2 (bRF-2) YP_002488456.1 KEGG: art:Arth_2667 hypothetical protein YP_002488457.1 KEGG: art:Arth_2668 hypothetical protein YP_002488458.1 PFAM: TadE family protein; KEGG: art:Arth_2669 TadE family protein YP_002488459.1 KEGG: art:Arth_2670 hypothetical protein YP_002488460.1 PFAM: type II secretion system protein; KEGG: art:Arth_2671 type II secretion system protein YP_002488461.1 PFAM: type II secretion system protein; KEGG: art:Arth_2672 type II secretion system protein YP_002488462.1 PFAM: type II secretion system protein E; KEGG: art:Arth_2673 type II secretion system protein E YP_002488463.1 PFAM: glycoside hydrolase family 25; KEGG: art:Arth_2674 glycoside hydrolase, family 25 YP_002488464.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: art:Arth_2688 glucose-1-phosphate thymidylyltransferase YP_002488465.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: art:Arth_2679 dTDP-glucose 4,6-dehydratase YP_002488466.1 PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: art:Arth_2678 dTDP-4-dehydrorhamnose reductase YP_002488467.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_2681 glycosyl transferase, family 2 YP_002488468.1 KEGG: art:Arth_2682 hypothetical protein YP_002488469.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_2683 glycosyl transferase, family 2 YP_002488470.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_2685 glycosyl transferase, family 2 YP_002488471.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_2680 glycosyl transferase, family 2 YP_002488472.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_2677 glycosyl transferase, family 2 YP_002488473.1 PFAM: polysaccharide biosynthesis protein; KEGG: art:Arth_2675 polysaccharide biosynthesis protein YP_002488474.1 KEGG: rsa:RSal33209_1613 hypothetical protein YP_002488475.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2691 ABC transporter YP_002488476.1 PFAM: ABC transporter; KEGG: art:Arth_2692 ABC-2 type transporter YP_002488477.1 KEGG: art:Arth_2693 glycosyl transferase, family 2 YP_002488478.1 KEGG: art:Arth_2694 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like YP_002488479.1 KEGG: aau:AAur_2679 acetyltransferase YP_002488480.1 PFAM: Forkhead-associated protein; cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: art:Arth_2695 FHA domain containing protein YP_002488481.1 KEGG: aau:AAur_2681 hypothetical protein YP_002488482.1 PFAM: transcription factor WhiB; KEGG: aau:AAur_2682 WhiB family transcription factor YP_002488483.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; hypothetical protein; KEGG: art:Arth_2698 signal transduction histidine kinase YP_002488484.1 PFAM: NAD-glutamate dehydrogenase; KEGG: art:Arth_2699 glutamate dehydrogenase (NAD) YP_002488485.1 KEGG: art:Arth_2700 ATPases involved in chromosome partitioning-like protein YP_002488486.1 KEGG: art:Arth_2701 hypothetical protein YP_002488487.1 TIGRFAM: excisionase; KEGG: art:Arth_2702 DNA binding domain, excisionase family YP_002488488.1 KEGG: art:Arth_2703 hypothetical protein YP_002488489.1 KEGG: art:Arth_2704 hypothetical protein YP_002488490.1 KEGG: art:Arth_2705 hypothetical protein YP_002488491.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002488492.1 PFAM: protein of unknown function DUF1006; KEGG: art:Arth_2707 protein of unknown function DUF1006 YP_002488493.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: aau:AAur_2693 ribosomal subunit interface protein YP_002488494.1 PFAM: phosphoribosyltransferase; KEGG: art:Arth_2709 phosphoribosyltransferase YP_002488495.1 KEGG: art:Arth_2710 hypothetical protein YP_002488496.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: art:Arth_2711 periplasmic sensor signal transduction histidine kinase YP_002488497.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aau:AAur_2697 DNA-binding response regulator YP_002488498.1 KEGG: art:Arth_2713 integral membrane protein YP_002488499.1 KEGG: art:Arth_2714 integral membrane protein YP_002488500.1 KEGG: art:Arth_2715 hypothetical protein YP_002488501.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: aau:AAur_2701 methanol dehydrogenase regulatory protein (moxR2) YP_002488502.1 PFAM: protein of unknown function DUF58; KEGG: art:Arth_2717 protein of unknown function DUF58 YP_002488503.1 KEGG: art:Arth_2718 hypothetical protein YP_002488504.1 KEGG: art:Arth_2719 hypothetical protein YP_002488505.1 TIGRFAM: chorismate mutase; PFAM: chorismate mutase; KEGG: art:Arth_2720 chorismate mutase YP_002488506.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2721 ABC transporter YP_002488507.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_2722 binding-protein-dependent transport systems inner membrane component YP_002488508.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_2723 binding-protein-dependent transport systems inner membrane component YP_002488509.1 PFAM: extracellular solute-binding protein family 5; KEGG: art:Arth_2724 extracellular solute-binding protein, family 5 YP_002488510.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002488511.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: art:Arth_2729 aminotransferase, class V YP_002488512.1 KEGG: art:Arth_2733 hypothetical protein YP_002488513.1 PFAM: heat shock protein DnaJ domain protein; KEGG: art:Arth_2735 heat shock protein DnaJ domain protein YP_002488514.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: art:Arth_2736 tRNA/rRNA methyltransferase (SpoU) YP_002488515.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_2737 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002488516.1 KEGG: art:Arth_2738 hypothetical protein YP_002488517.1 PFAM: LmbE family protein; KEGG: art:Arth_2740 LmbE family protein YP_002488518.1 PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein subunit alpha; KEGG: art:Arth_2741 electron transfer flavoprotein, subunit alpha YP_002488519.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: aau:AAur_2724 electron transfer flavoprotein, beta subunit YP_002488520.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: art:Arth_2743 PDZ/DHR/GLGF domain protein YP_002488521.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: protein of unknown function DUF477; KEGG: art:Arth_2744 hypothetical protein YP_002488522.1 PFAM: PspA/IM30 family protein; KEGG: art:Arth_2745 phage shock protein A, PspA YP_002488523.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: art:Arth_2747 deoxyribodipyrimidine photo-lyase YP_002488524.1 KEGG: art:Arth_2748 hypothetical protein YP_002488525.1 PFAM: protein of unknown function UPF0182; KEGG: art:Arth_2749 protein of unknown function UPF0182 YP_002488526.1 KEGG: art:Arth_2750 PDZ domain-containing protein YP_002488527.1 KEGG: art:Arth_2751 hypothetical protein YP_002488528.1 PFAM: protein of unknown function DUF45; KEGG: art:Arth_2752 protein of unknown function DUF45 YP_002488529.1 PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: art:Arth_2753 UvrD/REP helicase YP_002488530.1 PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; KEGG: art:Arth_2754 NUDIX hydrolase YP_002488531.1 PFAM: aminoglycoside phosphotransferase; KEGG: art:Arth_2755 aminoglycoside phosphotransferase YP_002488532.1 PFAM: UvrD/REP helicase; KEGG: art:Arth_2756 UvrD/REP helicase YP_002488533.1 PFAM: UvrD/REP helicase; KEGG: art:Arth_2757 UvrD/REP helicase YP_002488534.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: aau:AAur_2741 methylated-DNA--protein-cysteine methyltransferase YP_002488535.1 3'-5' exonuclease of DNA polymerase III YP_002488536.1 PFAM: extracellular solute-binding protein family 3; KEGG: aau:AAur_2743 amino acid ABC transporter YP_002488537.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_2744 amino acid ABC transporter permease YP_002488538.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_2745 amino acid ABC transporter ATP-binding protein YP_002488539.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_002488540.1 PFAM: Luciferase-like monooxygenase; KEGG: art:Arth_2764 luciferase family protein YP_002488541.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002488542.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: art:Arth_2766 uroporphyrinogen-III synthase YP_002488543.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002488544.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_002488545.1 PFAM: chlorite dismutase; KEGG: art:Arth_2769 chlorite dismutase YP_002488546.1 KEGG: art:Arth_2770 hypothetical protein YP_002488547.1 KEGG: art:Arth_2771 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase YP_002488548.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_002488549.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_002488550.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: art:Arth_2774 UBA/ThiF-type NAD/FAD binding protein YP_002488551.1 PFAM: regulatory protein TetR; KEGG: art:Arth_2775 TetR family transcriptional regulator YP_002488552.1 KEGG: aau:AAur_2759 hypothetical protein YP_002488553.1 KEGG: aau:AAur_2760 integral membrane protein YP_002488554.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002488555.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: art:Arth_2780 thiamine biosynthesis protein ThiS YP_002488556.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: art:Arth_2781 glycine oxidase ThiO YP_002488557.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_002488558.1 PFAM: ribonuclease II; KEGG: art:Arth_2784 ribonuclease II YP_002488559.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: art:Arth_2785 DEAD/DEAH box helicase YP_002488560.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: art:Arth_2786 site-specific DNA-methyltransferase (adenine-specific) YP_002488561.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: art:Arth_2787 PHP C-terminal domain protein YP_002488562.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: art:Arth_2788 Xaa-Pro aminopeptidase YP_002488563.1 KEGG: art:Arth_2789 hypothetical protein YP_002488564.1 PFAM: CBS domain containing protein; MgtE intracellular region; KEGG: aau:AAur_2775 magnesium transporter MgtE YP_002488565.1 PFAM: protein of unknown function DUF1003; KEGG: art:Arth_2791 protein of unknown function DUF1003 YP_002488566.1 PFAM: protein of unknown function DUF59; KEGG: art:Arth_2792 protein of unknown function DUF59 YP_002488567.1 KEGG: art:Arth_2793 hypothetical protein YP_002488568.1 KEGG: art:Arth_2794 hypothetical protein YP_002488569.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_2795 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002488570.1 PFAM: O-methyltransferase family 3; KEGG: art:Arth_2796 O-methyltransferase, family 3 YP_002488571.1 KEGG: art:Arth_2797 hypothetical protein YP_002488572.1 KEGG: art:Arth_2798 integral membrane protein YP_002488573.1 KEGG: art:Arth_2799 hypothetical protein YP_002488574.1 PFAM: conserved hypothetical protein; KEGG: art:Arth_2800 conserved hypothetical protein 730 YP_002488575.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2801 ABC transporter YP_002488576.1 PFAM: extracellular solute-binding protein family 3; KEGG: art:Arth_2802 extracellular solute-binding protein, family 3 YP_002488577.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_2803 polar amino acid ABC transporter inner membrane subunit YP_002488578.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_2804 polar amino acid ABC transporter inner membrane subunit YP_002488579.1 catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate YP_002488580.1 KEGG: art:Arth_2806 transferase YP_002488581.1 KEGG: art:Arth_2807 hypothetical protein YP_002488582.1 KEGG: art:Arth_2808 hypothetical protein YP_002488583.1 PFAM: regulatory protein TetR; KEGG: art:Arth_2809 TetR family transcriptional regulator YP_002488584.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: art:Arth_2810 UDP-galactose 4-epimerase YP_002488585.1 KEGG: aau:AAur_2795 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: citrate synthase YP_002488586.1 catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis YP_002488587.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aau:AAur_2797 ferredoxin YP_002488588.1 KEGG: art:Arth_2814 hypothetical protein YP_002488589.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: art:Arth_2817 GTP-binding protein TypA YP_002488590.1 KEGG: art:Arth_2818 lipolytic enzyme, G-D-S-L family YP_002488591.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: aau:AAur_2801 peptide ABC transporter ATP-binding protein YP_002488592.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_2802 ABC-type dipeptide/oligopeptide transporters, permeases YP_002488593.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_2803 ABC-type dipeptide/oligopeptide transporters, permeases YP_002488594.1 PFAM: extracellular solute-binding protein family 5; KEGG: art:Arth_2822 extracellular solute-binding protein, family 5 YP_002488595.1 PFAM: extracellular solute-binding protein family 5; KEGG: art:Arth_2827 extracellular solute-binding protein, family 5 YP_002488596.1 PFAM: DNA photolyase FAD-binding; deoxyribodipyrimidine photolyase-related protein; KEGG: amr:AM1_5696 deoxyribodipyrimidine photolyase-related protein YP_002488597.1 PFAM: Luciferase-like monooxygenase; KEGG: aau:AAur_0709 luciferase-like monooxygenase protein YP_002488598.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: kra:Krad_3783 short-chain dehydrogenase/reductase SDR YP_002488600.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002488601.1 PFAM: protein of unknown function DUF195; KEGG: art:Arth_2832 protein of unknown function DUF195 YP_002488602.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002488603.1 KEGG: art:Arth_2834 hypothetical protein YP_002488604.1 KEGG: aau:AAur_2810 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_002488605.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002488606.1 PFAM: protein of unknown function DUF344; KEGG: art:Arth_2837 protein of unknown function DUF344 YP_002488607.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_002488608.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: art:Arth_2839 substrate-binding region of ABC-type glycine betaine transporter YP_002488609.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_2840 binding-protein-dependent transport systems inner membrane component YP_002488610.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_2841 binding-protein-dependent transport systems inner membrane component YP_002488611.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2842 ABC transporter YP_002488612.1 PFAM: pirin; KEGG: art:Arth_2844 pirin domain protein domain protein YP_002488613.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: art:Arth_2845 ATPase, BadF/BadG/BcrA/BcrD type YP_002488614.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_2847 LysR family transcriptional regulator YP_002488615.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_2848 major facilitator superfamily MFS_1 YP_002488616.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_2850 AsnC family transcriptional regulator YP_002488617.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_2853 major facilitator superfamily MFS_1 YP_002488618.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_2854 AsnC family transcriptional regulator YP_002488619.1 TIGRFAM: magnesium and cobalt transporter CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: art:Arth_2855 magnesium and cobalt transporter CorA YP_002488620.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_0695 NUDIX hydrolase YP_002488621.1 PFAM: cytidylyltransferase; KEGG: art:Arth_0694 transcriptional regulator NadR (probably AsnC-family) YP_002488622.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: art:Arth_0693 nicotinamide mononucleotide transporter PnuC YP_002488623.1 KEGG: art:Arth_2862 hypothetical protein YP_002488624.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_2863 GCN5-related N-acetyltransferase YP_002488625.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: art:Arth_2864 UDP-glucose pyrophosphorylase YP_002488626.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: art:Arth_2865 5-formyltetrahydrofolate cyclo-ligase YP_002488627.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: aau:AAur_2854 hypothetical protein YP_002488628.1 PFAM: SAF domain protein; KEGG: art:Arth_2867 hypothetical protein YP_002488629.1 KEGG: art:Arth_2868 hypothetical protein YP_002488630.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002488631.1 KEGG: art:Arth_2870 hypothetical protein YP_002488632.1 KEGG: art:Arth_2871 membrane protein YP_002488633.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: art:Arth_2872 PTS IIA-like nitrogen-regulatory protein PtsN YP_002488634.1 PFAM: FAD dependent oxidoreductase; KEGG: art:Arth_2873 FAD dependent oxidoreductase YP_002488635.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002488636.1 KEGG: aau:AAur_2864 hypothetical protein YP_002488637.1 KEGG: aau:AAur_2863 hypothetical protein YP_002488638.1 KEGG: art:Arth_0698 hypothetical protein YP_002488639.1 KEGG: sgr:SGR_303 hypothetical protein YP_002488640.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_2876 ABC transporter YP_002488641.1 KEGG: art:Arth_2879 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_002488642.1 PFAM: acyltransferase 3; KEGG: art:Arth_2880 acyltransferase 3 YP_002488643.1 PFAM: acyltransferase 3; KEGG: aau:AAur_2869 acyltransferase domain-containing protein YP_002488644.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: art:Arth_2883 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002488645.1 PFAM: regulatory protein LuxR; KEGG: art:Arth_2885 LuxR family transcriptional regulator YP_002488646.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_002488647.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: aau:AAur_2007 riboflavin biosynthesis protein RibD domain-containing protein YP_002488648.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_002488649.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002488650.1 PFAM: protein of unknown function DUF6 transmembrane; protein of unknown function DUF250; KEGG: art:Arth_2730 protein of unknown function DUF6, transmembrane YP_002488651.1 KEGG: aau:AAur_2876 hypothetical protein YP_002488652.1 KEGG: art:Arth_2888 hypothetical protein YP_002488653.1 catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002488654.1 PFAM: glycoside hydrolase; KEGG: art:Arth_2890 beta-N-acetylhexosaminidase YP_002488655.1 ATP-dependent carboxylate-amine ligase YP_002488656.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002488657.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_2884 ribosomal-protein-alanine acetyltransferase YP_002488658.1 PFAM: peptidase M22 glycoprotease; KEGG: art:Arth_2894 peptidase M22, glycoprotease YP_002488659.1 PFAM: protein of unknown function UPF0079; KEGG: aau:AAur_2886 ATPase or kinase YP_002488660.1 KEGG: art:Arth_2896 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_002488661.1 PFAM: PfkB domain protein; KEGG: art:Arth_2897 PfkB domain protein YP_002488662.1 PFAM: glycoside hydrolase family 4; KEGG: art:Arth_2898 glycoside hydrolase, family 4 YP_002488663.1 TIGRFAM: UDP-N-acetylglucosamine; PFAM: glycosyl transferase group 1; KEGG: art:Arth_2900 glycosyl transferase, group 1 YP_002488664.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_002488665.1 KEGG: art:Arth_2902 hypothetical protein YP_002488666.1 KEGG: art:Arth_2903 membrane protein-like protein YP_002488667.1 PFAM: regulatory protein MerR; KEGG: art:Arth_2904 transcriptional regulator YP_002488668.1 TIGRFAM: inositol 1-phosphate synthase; PFAM: myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase GAPDH domain protein; KEGG: art:Arth_2905 myo-inositol-1-phosphate synthase YP_002488669.1 PFAM: aldo/keto reductase; KEGG: aau:AAur_2894 aldo/keto reductase family oxidoreductase YP_002488670.1 KEGG: art:Arth_2907 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002488671.1 KEGG: art:Arth_2908 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002488672.1 KEGG: art:Arth_2909 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002488673.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: art:Arth_2910 carbohydrate kinase, YjeF related protein YP_002488674.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002488675.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002488676.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_002488677.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: art:Arth_2914 VanY D-Ala-D-Ala carboxypeptidase. metallo peptidase. MEROPS family M15B YP_002488678.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: art:Arth_2915 large conductance mechanosensitive channel protein YP_002488679.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002488680.1 PFAM: acyltransferase 3; KEGG: sgr:SGR_4949 O-acyltransferase YP_002488681.1 PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: lxx:Lxx03270 glycosyl transferase YP_002488682.1 PFAM: glycosyl transferase family 39; KEGG: mkm:Mkms_3998 glycosyl transferase, family 39 YP_002488683.1 PFAM: glycosyl transferase family 39; KEGG: mva:Mvan_4427 glycosyl transferase YP_002488684.1 forms a direct contact with the tRNA during translation YP_002488685.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002488686.1 PFAM: peptidase A24A prepilin type IV; KEGG: aau:AAur_2906 type IV leader peptidase family protein YP_002488687.1 PFAM: Flp/Fap pilin component; KEGG: aau:AAur_2907 hypothetical protein YP_002488688.1 PFAM: Flp/Fap pilin component; KEGG: art:Arth_2920 Flp/Fap pilin component YP_002488689.1 PFAM: TadE family protein; KEGG: art:Arth_2929 TadE family protein YP_002488690.1 KEGG: art:Arth_2922 hypothetical protein YP_002488691.1 KEGG: art:Arth_2923 hypothetical protein YP_002488692.1 KEGG: aau:AAur_2911 flp pilus assembly protein CpaE YP_002488693.1 PFAM: type II secretion system protein E; KEGG: art:Arth_2925 type II secretion system protein E YP_002488694.1 PFAM: type II secretion system protein; KEGG: aau:AAur_2913 type II secretion system protein F YP_002488695.1 PFAM: type II secretion system protein; KEGG: aau:AAur_2914 type II secretion system protein F YP_002488696.1 PFAM: Flp/Fap pilin component; KEGG: bja:bsr1550 pilus assembly protein YP_002488697.1 PFAM: Flp/Fap pilin component; KEGG: bbr:BB1821 hypothetical protein YP_002488698.1 PFAM: TadE family protein; KEGG: art:Arth_2929 TadE family protein YP_002488699.1 KEGG: art:Arth_2930 hypothetical protein YP_002488700.1 PFAM: SAF domain protein; KEGG: art:Arth_2931 hypothetical protein YP_002488701.1 KEGG: art:Arth_2932 Flp pilus assembly protein ATPase CpaE-like protein YP_002488702.1 PFAM: type II secretion system protein E; KEGG: art:Arth_2933 type II secretion system protein E YP_002488703.1 PFAM: type II secretion system protein; KEGG: art:Arth_2934 type II secretion system protein YP_002488704.1 PFAM: type II secretion system protein; KEGG: art:Arth_2935 type II secretion system protein YP_002488705.1 KEGG: art:Arth_1772 hypothetical protein YP_002488706.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: art:Arth_1773 two component transcriptional regulator, winged helix family YP_002488707.1 KEGG: aau:AAur_2916 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_002488708.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002488709.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002488710.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002488711.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002488712.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002488713.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002488714.1 PFAM: peptidase S58 DmpA; KEGG: art:Arth_2945 peptidase S58, DmpA YP_002488715.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_2924 sn-glycerol-3-phosphate transport system permease YP_002488716.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_2925 sn-glycerol-3-phosphate-binding protein YP_002488717.1 PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_2926 secreted sn-glycerol-3-phosphate-binding protein YP_002488718.1 KEGG: sen:SACE_0543 transmembrane transporter YP_002488719.1 SMART: helix-turn-helix domain protein; KEGG: art:Arth_0924 XRE family transcriptional regulator YP_002488720.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: aau:AAur_2927 methionine aminopeptidase, type I YP_002488721.1 PFAM: adenylate kinase; KEGG: art:Arth_2955 adenylate kinase YP_002488722.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002488723.1 PFAM: ribosomal protein L15; KEGG: art:Arth_2957 LSU ribosomal protein L15P YP_002488724.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002488725.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002488726.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: art:Arth_2960 50S ribosomal protein L18P YP_002488727.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002488728.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002488729.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002488730.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002488731.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002488732.1 PFAM: ribosomal protein S17; KEGG: art:Arth_2966 SSU ribosomal protein S17P YP_002488733.1 PFAM: ribosomal protein L29; KEGG: art:Arth_2967 LSU ribosomal protein L29P YP_002488734.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002488735.1 KEGG: art:Arth_2969 30S ribosomal protein S3P; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; ribosomal protein S3 domain; SMART: KH domain protein YP_002488736.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002488737.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002488738.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002488739.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002488740.1 PFAM: ribosomal protein L4/L1e; KEGG: art:Arth_2974 LSU ribosomal protein L4P YP_002488741.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002488742.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002488743.1 TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; KEGG: art:Arth_2977 glycoside hydrolase, family 1 YP_002488745.1 KEGG: art:Arth_2978 hypothetical protein YP_002488746.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002488747.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002488748.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002488749.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002488750.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002488751.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002488752.1 KEGG: art:Arth_2985 hypothetical protein YP_002488753.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_002488754.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: aau:AAur_2959 YbaK/EbsC protein YP_002488755.1 TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; KEGG: aau:AAur_2960 ribosomal protein L7/L12 YP_002488756.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002488757.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_2991 GCN5-related N-acetyltransferase YP_002488758.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_2963 acetyltransferase, GNAT family protein YP_002488759.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002488760.1 binds directly to 23S ribosomal RNA YP_002488761.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: aau:AAur_2966 transcription termination/antitermination factor NusG YP_002488762.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002488763.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002488764.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: art:Arth_2998 two component LuxR family transcriptional regulator YP_002488765.1 PFAM: ATP-binding region ATPase domain protein; PspC domain protein; KEGG: art:Arth_2999 signal transduction histidine kinase YP_002488766.1 PFAM: PspC domain protein; KEGG: art:Arth_3000 phage shock protein C, PspC YP_002488767.1 KEGG: art:Arth_3001 hypothetical protein YP_002488768.1 PFAM: PspC domain protein; KEGG: art:Arth_3002 phage shock protein C, PspC YP_002488769.1 PFAM: phosphofructokinase; KEGG: aau:AAur_2976 6-phosphofructokinase YP_002488770.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_3004 GCN5-related N-acetyltransferase YP_002488771.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3005 drug resistance transporter EmrB/QacA subfamily YP_002488772.1 PFAM: ankyrin; KEGG: aau:AAur_2980 ankyrin repeat-containing protein YP_002488773.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: art:Arth_3008 glycine cleavage T protein (aminomethyl transferase) YP_002488774.1 KEGG: art:Arth_3009 hypothetical protein YP_002488775.1 PFAM: Domain of unknown function DUF1794; KEGG: art:Arth_3010 hypothetical protein YP_002488776.1 KEGG: aau:AAur_2984 hypothetical protein YP_002488777.1 KEGG: art:Arth_3011 hypothetical protein YP_002488778.1 PFAM: transcriptional regulator; KEGG: art:Arth_3012 response regulator receiver protein YP_002488779.1 TIGRFAM: mycothiol biosynthesis acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_3013 GCN5-related N-acetyltransferase YP_002488780.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_002488781.1 PFAM: NUDIX hydrolase; phosphoglycerate mutase; KEGG: aau:AAur_2989 MutT/NUDIX family protein YP_002488782.1 KEGG: art:Arth_3016 hypothetical protein YP_002488783.1 PFAM: regulatory protein GntR HTH; KEGG: art:Arth_3017 GntR family transcriptional regulator YP_002488784.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002488785.1 PFAM: dihydrofolate reductase region; KEGG: art:Arth_3019 dihydrofolate reductase YP_002488786.1 KEGG: art:Arth_3020 hypothetical protein YP_002488787.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002488788.1 KEGG: art:Arth_3022 hypothetical protein YP_002488790.1 PFAM: FAD linked oxidase; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; KEGG: aau:AAur_2999 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002488791.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3025 major facilitator superfamily MFS_1 YP_002488792.1 PFAM: MaoC domain protein dehydratase; KEGG: art:Arth_3026 MaoC domain protein dehydratase YP_002488793.1 KEGG: art:Arth_3027 hypothetical protein YP_002488794.1 KEGG: art:Arth_3030 hypothetical protein YP_002488795.1 KEGG: art:Arth_3031 hypothetical protein YP_002488796.1 PFAM: HpcH/HpaI aldolase; KEGG: art:Arth_3032 HpcH/HpaI aldolase YP_002488797.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cms:CMS_0979 hypothetical protein YP_002488798.1 PFAM: helix-turn-helix HxlR type; KEGG: sen:SACE_1244 transcriptional regulator YP_002488799.1 PFAM: aldo/keto reductase; KEGG: art:Arth_3037 aldo/keto reductase YP_002488800.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: art:Arth_3038 alpha amylase, catalytic region YP_002488801.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: art:Arth_3043 Na+/H+ antiporter YP_002488802.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: art:Arth_3044 hypothetical protein YP_002488803.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: sen:SACE_6341 deaminase-reductase domain-containing protein YP_002488805.1 PFAM: hypothetical protein; KEGG: art:Arth_3047 hypothetical protein YP_002488806.1 PFAM: helicase; DbpA RNA-binding domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases; KEGG: art:Arth_3048 DEAD/DEAH box helicase YP_002488807.1 PFAM: MOSC domain containing protein; KEGG: art:Arth_3049 MOSC domain containing protein YP_002488808.1 KEGG: aau:AAur_3025 Tat pathway signal sequence domain-containing protein YP_002488809.1 PFAM: glutathionylspermidine synthase; KEGG: art:Arth_3053 glutathionylspermidine synthase YP_002488810.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_3054 amino acid permease-associated region YP_002488811.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: art:Arth_3055 acyl-CoA dehydrogenase domain protein YP_002488812.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_3056 short-chain dehydrogenase/reductase SDR YP_002488813.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3058 major facilitator superfamily MFS_1 YP_002488814.1 PFAM: helix-turn-helix HxlR type; KEGG: art:Arth_3059 HxlR family transcriptional regulator YP_002488815.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine YP_002488816.1 TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: art:Arth_3062 cystathionine beta-synthase YP_002488817.1 PFAM: Arsenical pump membrane protein; citrate transporter; KEGG: art:Arth_3063 arsenical pump membrane protein YP_002488818.1 KEGG: aau:AAur_4137 hypothetical protein YP_002488819.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_3064 glyoxalase/bleomycin resistance protein/dioxygenase YP_002488820.1 KEGG: art:Arth_3065 hypothetical protein YP_002488822.1 PFAM: AMP-dependent synthetase and ligase; KEGG: art:Arth_3066 AMP-dependent synthetase and ligase YP_002488823.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: art:Arth_3067 antibiotic biosynthesis monooxygenase YP_002488824.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: art:Arth_3068 thioredoxin YP_002488825.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_3047 ABC transporter ATP binding protein YP_002488826.1 KEGG: aau:AAur_3049 ABC transporter permease protein YP_002488827.1 PFAM: thioesterase superfamily protein; KEGG: art:Arth_3069 hypothetical protein YP_002488828.1 PFAM: ion transporter; ion transport 2 domain protein; KEGG: art:Arth_3070 ion transport 2 domain protein YP_002488829.1 PFAM: peptidoglycan-binding LysM; KEGG: art:Arth_3071 peptidoglycan-binding LysM YP_002488830.1 PFAM: CBS domain containing protein; KEGG: aau:AAur_1111 CBS domain-containing protein YP_002488831.1 KEGG: art:Arth_3072 hypothetical protein YP_002488832.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_002488833.1 metalloprotease YP_002488834.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: art:Arth_3075 major facilitator superfamily MFS_1 YP_002488835.1 PFAM: ferric-uptake regulator; KEGG: art:Arth_3077 ferric uptake regulator, Fur family YP_002488836.1 PFAM: catalase domain protein; KEGG: art:Arth_3078 catalase YP_002488837.1 PFAM: conserved hypothetical protein; KEGG: aau:AAur_3060 hypothetical protein YP_002488838.1 KEGG: art:Arth_3084 transcriptional regulator, TetR family YP_002488839.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_3085 amino acid permease-associated region YP_002488840.1 PFAM: protein of unknown function DUF779; KEGG: art:Arth_3086 protein of unknown function DUF779 YP_002488841.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_3087 alcohol dehydrogenase GroES domain protein YP_002488842.1 PFAM: aldehyde dehydrogenase; KEGG: art:Arth_3088 aldehyde dehydrogenase (NAD(+)) YP_002488843.1 PFAM: transcriptional regulator; GAF domain protein; KEGG: art:Arth_3089 transcriptional regulator YP_002488844.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aau:AAur_3066 ferredoxin/ferredoxin-NADP reductase YP_002488845.1 KEGG: art:Arth_3091 hypothetical protein YP_002488846.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: aau:AAur_3067 integral membrane protein (RarD protein) YP_002488847.1 PFAM: glycoside hydrolase family 10; KEGG: sma:SAV_4984 beta-1,4-xylanase YP_002488848.1 PFAM: polysaccharide deacetylase; KEGG: art:Arth_1231 polysaccharide deacetylase YP_002488849.1 PFAM: polysaccharide deacetylase; KEGG: mmr:Mmar10_1686 polysaccharide deacetylase YP_002488850.1 PFAM: glycosyl transferase family 2; KEGG: btl:BALH_3079 glycosyl transferase and polysaccharide deacetylase fusion protein YP_002488851.1 KEGG: LOC684306; hypothetical protein LOC684306 YP_002488852.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_002488853.1 PFAM: aldehyde dehydrogenase; KEGG: art:Arth_3095 aldehyde dehydrogenase YP_002488854.1 PFAM: purine catabolism PurC domain protein; KEGG: art:Arth_3096 purine catabolism PurC domain protein YP_002488855.1 PFAM: helix-turn-helix domain protein; KEGG: aau:AAur_0977 helix-turn-helix domain-containing protein YP_002488856.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: art:Arth_0868 methionine aminopeptidase, type I YP_002488857.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: art:Arth_1884 CHAD domain containing protein YP_002488858.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3103 major facilitator superfamily MFS_1 YP_002488859.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_3104 GntR family transcriptional regulator YP_002488860.1 PFAM: protein of unknown function UPF0118; KEGG: art:Arth_3105 protein of unknown function UPF0118 YP_002488861.1 KEGG: aau:AAur_4026 hypothetical protein YP_002488862.1 KEGG: art:Arth_3107 hypothetical protein YP_002488863.1 PFAM: protein of unknown function DUF1206; KEGG: art:Arth_3108 protein of unknown function DUF1206 YP_002488864.1 KEGG: aau:AAur_4151 hypothetical protein YP_002488865.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aau:AAur_3075 ferredoxin/ferredoxin-NADP reductase YP_002488866.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: art:Arth_3111 uroporphyrinogen-III C-methyltransferase YP_002488867.1 KEGG: art:Arth_3114 hypothetical protein YP_002488868.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3115 binding-protein-dependent transport systems inner membrane component YP_002488869.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_3116 ABC transporter YP_002488870.1 TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; KEGG: art:Arth_3117 NlpA lipoprotein YP_002488871.1 KEGG: aau:AAur_3090 sulfate adenylytransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding YP_002488872.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_002488873.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: art:Arth_3124 phosphoadenylylsulfate reductase (thioredoxin) YP_002488874.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: art:Arth_3125 ferredoxin--nitrite reductase YP_002488875.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: art:Arth_3126 cobalamin (vitamin B12) biosynthesis CbiX protein YP_002488876.1 PFAM: protein of unknown function UPF0126; KEGG: art:Arth_3127 protein of unknown function UPF0126 YP_002488877.1 KEGG: art:Arth_3128 hypothetical protein YP_002488878.1 PFAM: protein of unknown function DUF559; KEGG: art:Arth_3129 hypothetical protein YP_002488879.1 PFAM: polyprenyl synthetase; KEGG: art:Arth_3130 trans-hexaprenyltranstransferase YP_002488880.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: aau:AAur_3101 monooxygenase, FAD-binding YP_002488881.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_3132 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase YP_002488882.1 TIGRFAM: isochorismate synthase; PFAM: chorismate binding-like; KEGG: art:Arth_3133 isochorismate synthases YP_002488883.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: art:Arth_3134 extracellular solute-binding protein, family 3 YP_002488884.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3135 polar amino acid ABC transporter inner membrane subunit YP_002488885.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_3136 ABC transporter YP_002488886.1 PFAM: aminotransferase class I and II; KEGG: art:Arth_3157 aminotransferase YP_002488887.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_2353 glyoxalase/bleomycin resistance protein/dioxygenase YP_002488888.1 PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: art:Arth_3138 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YP_002488889.1 PFAM: protein of unknown function DUF839; KEGG: art:Arth_3152 protein of unknown function DUF839 YP_002488890.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: art:Arth_3153 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein YP_002488891.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: art:Arth_3755 Mg2+ transporter protein, CorA family protein YP_002488892.1 PFAM: regulatory protein ArsR; KEGG: hau:Haur_1071 ArsR family transcriptional regulator YP_002488893.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: hau:Haur_1072 activator of HSP90 ATPase 1 family protein YP_002488894.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_4096 major facilitator superfamily MFS_1 YP_002488895.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: art:Arth_3155 phosphoesterase, PA-phosphatase related YP_002488896.1 KEGG: art:Arth_0989 hypothetical protein YP_002488897.1 KEGG: LOC100149318; hypothetical protein LOC100149318 YP_002488898.1 TIGRFAM: peptidase S26B, signal peptidase; KEGG: cmi:CMM_1247 signal peptidase I YP_002488899.1 KEGG: cmi:CMM_1249 hypothetical protein YP_002488900.1 KEGG: cms:CMS_1002 hypothetical protein YP_002488901.1 KEGG: cms:CMS_1793 hypothetical protein YP_002488902.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mrd:Mrad2831_2174 monooxygenase FAD-binding YP_002488903.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3164 major facilitator superfamily MFS_1 YP_002488904.1 KEGG: nca:Noca_3734 hypothetical protein YP_002488906.1 KEGG: art:Arth_3229 hypothetical protein YP_002488907.1 KEGG: kra:Krad_4364 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein YP_002488908.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_3625 alpha/beta hydrolase fold YP_002488909.1 KEGG: rha:RHA1_ro02549 hypothetical protein YP_002488910.1 PFAM: periplasmic solute binding protein; KEGG: nfa:nfa23270 transporter YP_002488911.1 KEGG: sco:SCO0474 lipoprotein YP_002488912.1 PFAM: ABC transporter; KEGG: nfa:nfa23260 ABC transporter YP_002488913.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO0476 ABC transporter, ATP-binding subunit YP_002488914.1 PFAM: cation transporter; KEGG: art:Arth_3754 cation transporter YP_002488915.1 KEGG: aau:AAur_pTC20233 hypothetical protein YP_002488916.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: dsy:DSY2591 hypothetical protein YP_002488917.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: hypothetical protein YP_002488919.1 PFAM: Fibronectin type III domain protein; KEGG: spc:Sputcn32_3550 fibronectin, type III domain-containing protein YP_002488920.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: kra:Krad_4531 integral membrane sensor signal transduction histidine kinase YP_002488921.1 PFAM: response regulator receiver; transcriptional regulator domain protein; transcriptional activator domain; KEGG: art:Arth_3158 response regulator receiver protein YP_002488922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: kra:Krad_2801 integral membrane sensor signal transduction histidine kinase YP_002488923.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sen:SACE_0101 two component system response regulator YP_002488924.1 KEGG: MBCDH23; hypothetical protein YP_002488925.1 PFAM: Hemolysin-type calcium-binding region; Animal haem peroxidase; KEGG: art:Arth_1243 animal haem peroxidase YP_002488926.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: krh:KRH_19960 hypothetical protein YP_002488927.1 PFAM: helix-turn-helix domain protein; KEGG: krh:KRH_19970 Xre family DNA-binding protein YP_002488928.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: kra:Krad_4049 hypothetical protein YP_002488929.1 KEGG: art:Arth_1406 hypothetical protein YP_002488930.1 PFAM: ANTAR domain protein; KEGG: art:Arth_3173 GAF sensor protein YP_002488932.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: art:Arth_3794 periplasmic sensor signal transduction histidine kinase YP_002488933.1 PFAM: YceI family protein; KEGG: art:Arth_3757 YceI family protein YP_002488934.1 PFAM: acyltransferase 3; KEGG: ace:Acel_1457 acyltransferase 3 YP_002488935.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: aau:AAur_3143 serine protease YP_002488936.1 KEGG: aau:AAur_3219 hypothetical protein YP_002488937.1 KEGG: art:Arth_1882 hypothetical protein YP_002488938.1 KEGG: art:Arth_0652 hypothetical protein YP_002488939.1 PFAM: lipolytic protein G-D-S-L family; KEGG: kra:Krad_1069 GDSL family lipase YP_002488940.1 KEGG: aau:AAur_2565 integral membrane protein YP_002488941.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_2566 ABC transporter ATP-binding protein YP_002488942.1 PFAM: regulatory protein GntR HTH; KEGG: aau:AAur_2567 GntR family transcriptional regulator YP_002488944.1 PFAM: diacylglycerol kinase; KEGG: art:Arth_0967 hypothetical protein YP_002488945.1 KEGG: art:Arth_3185 Ig family protein YP_002488946.1 PFAM: beta-lactamase; KEGG: art:Arth_3186 beta-lactamase YP_002488947.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: aau:AAur_0695 LacI family transcriptional regulator YP_002488948.1 KEGG: art:Arth_0051 inulin fructotransferase (DFA-I-forming) YP_002488949.1 PFAM: PfkB domain protein; KEGG: aau:AAur_1960 fructokinase YP_002488950.1 KEGG: art:Arth_0054 levanase; PFAM: glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32 YP_002488951.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: aau:AAur_0695 LacI family transcriptional regulator YP_002488952.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_0697 ABC-type sugar transporter, permease YP_002488953.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_0698 ABC-type sugar transport system, permease YP_002488954.1 PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_0699 extracellular sugar-binding protein YP_002488955.1 KEGG: fre:Franean1_7046 inulin fructotransferase (DFA-I-forming) YP_002488956.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: art:Arth_3191 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_002488957.1 PFAM: transketolase; transketolase domain protein; KEGG: art:Arth_3192 transketolase, central region YP_002488958.1 PFAM: dehydrogenase E1 component; KEGG: art:Arth_3193 pyruvate dehydrogenase (acetyl-transferring) YP_002488959.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aau:AAur_pTC20226 two-component system response regulator YP_002488960.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: art:Arth_3211 UDP-glucose pyrophosphorylase YP_002488961.1 KEGG: aau:AAur_pTC20228 integral membrane protein YP_002488962.1 PFAM: glycosyl transferase group 1; KEGG: aau:AAur_pTC20229 glycosyl transferase, group 1 family protein YP_002488963.1 KEGG: aau:AAur_pTC20230 hypothetical protein YP_002488964.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: aau:AAur_pTC20231 UDP-glucose 4-epimerase YP_002488965.1 KEGG: aau:AAur_pTC20232 hypothetical protein YP_002488966.1 KEGG: aau:AAur_pTC20233 hypothetical protein YP_002488967.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_3194 AsnC family transcriptional regulator YP_002488968.1 KEGG: aau:AAur_4000 hypothetical protein YP_002488969.1 KEGG: aau:AAur_3999 hypothetical protein YP_002488970.1 KEGG: aau:AAur_3998 hypothetical protein YP_002488971.1 KEGG: par:Psyc_1601 hypothetical protein YP_002488972.1 KEGG: art:Arth_3233 hypothetical protein YP_002488973.1 KEGG: art:Arth_3232 peptidoglycan bound protein YP_002488974.1 KEGG: aau:AAur_2845 hypothetical protein YP_002488975.1 TIGRFAM: peptidase S26B, signal peptidase; KEGG: aau:AAur_2846 hypothetical protein YP_002488976.1 KEGG: art:Arth_0524 Hpt protein YP_002488977.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nca:Noca_2050 response regulator receiver YP_002488978.1 KEGG: aau:AAur_0598 hypothetical protein YP_002488979.1 KEGG: sus:acid_6042 hypothetical protein YP_002488980.1 KEGG: art:Arth_3188 hypothetical protein YP_002488981.1 PFAM: Hpt domain protein; KEGG: art:Arth_1772 hypothetical protein YP_002488982.1 PFAM: glycosyl transferase family 2; general secretory system II protein E domain protein; KEGG: ttj:TTHA0743 glycosyltransferase related protein YP_002488983.1 KEGG: sus:acid_4600 hypothetical protein YP_002488984.1 KEGG: mva:Mvan_5244 hypothetical protein YP_002488985.1 KEGG: cmi:CMM_0826 hypothetical protein YP_002488986.1 KEGG: bcj:BCAL3353 outer membrane autotransporter YP_002488987.1 KEGG: art:Arth_3172 hypothetical protein YP_002488990.1 KEGG: bra:BRADO7047 GDP-mannose 6-dehydrogenase (GMD); TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_002488991.1 PFAM: glycosyl transferase group 1; KEGG: ace:Acel_1920 glycosyl transferase, group 1 YP_002488992.1 KEGG: bxe:Bxe_A3783 glycosyl transferase YP_002488993.1 PFAM: polysaccharide pyruvyl transferase; KEGG: dsh:Dshi_4136 polysaccharide pyruvyl transferase YP_002488994.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: psa:PST_2497 hypothetical protein YP_002488995.1 KEGG: sag:SAG0913 chloramphenicol acetyltransferase YP_002488996.1 KEGG: aau:AAur_4118 integral membrane protein YP_002488997.1 PFAM: glycosyl transferase group 1; KEGG: kra:Krad_3674 hypothetical protein YP_002488998.1 KEGG: art:Arth_3195 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_002488999.1 KEGG: art:Arth_3206 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_002489000.1 KEGG: art:Arth_3208 hypothetical protein YP_002489001.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: art:Arth_3209 hypothetical protein YP_002489002.1 PFAM: VanZ family protein; KEGG: art:Arth_3210 VanZ family protein YP_002489003.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: art:Arth_3211 UDP-glucose pyrophosphorylase YP_002489004.1 KEGG: art:Arth_3220 hypothetical protein YP_002489005.1 KEGG: art:Arth_3221 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_002489006.1 KEGG: art:Arth_0871 beta-mannanase-like protein YP_002489008.1 PFAM: glycosyl transferase family 2; KEGG: kra:Krad_3499 glycosyl transferase YP_002489009.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: art:Arth_3213 enoyl-CoA hydratase YP_002489010.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: art:Arth_3214 phenylacetate-CoA oxygenase/reductase, PaaK subunit YP_002489011.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: art:Arth_3215 phenylacetate-CoA oxygenase, PaaJ subunit YP_002489012.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: aau:AAur_3224 phenylacetate-CoA oxygenase, PaaI subunit YP_002489013.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_002489014.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_002489015.1 KEGG: art:Arth_0448 hypothetical protein YP_002489016.1 PFAM: aminoglycoside phosphotransferase; KEGG: sgr:SGR_6953 hypothetical protein YP_002489017.1 PFAM: protein of unknown function DUF661; KEGG: nca:Noca_2592 hypothetical protein YP_002489018.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor YP_002489019.1 KEGG: ace:Acel_2031 hypothetical protein YP_002489020.1 PFAM: carbon storage regulator; KEGG: lxx:Lxx06470 carbon storage regulator CsrA YP_002489021.1 KEGG: ace:Acel_0862 hypothetical protein YP_002489022.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: kra:Krad_1673 flagellar biosynthesis protein FlhA YP_002489023.1 PFAM: type III secretion exporter; KEGG: kra:Krad_1669 type III secretion exporter YP_002489024.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: kra:Krad_1668 flagellar biosynthetic protein FliR YP_002489025.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: ace:Acel_0858 flagellar biosynthetic protein FliQ YP_002489026.1 KEGG: kra:Krad_1666 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_002489027.1 PFAM: flagellar biosynthesis protein FliO; KEGG: kra:Krad_1665 hypothetical protein YP_002489028.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: kra:Krad_1664 flagellar motor switch protein FliN YP_002489029.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: kra:Krad_1663 flagellar motor switch protein FliM YP_002489030.1 PFAM: OmpA/MotB domain protein; KEGG: nca:Noca_0748 OmpA/MotB domain-containing protein YP_002489031.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: nca:Noca_0749 MotA/TolQ/ExbB proton channel YP_002489032.1 PFAM: flagellar FlbD family protein; KEGG: ace:Acel_0850 flagellar FlbD family protein YP_002489033.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: lxx:Lxx06420 flagellar hook protein YP_002489034.1 PFAM: flagellar hook capping protein; KEGG: kra:Krad_1657 flagellar hook capping protein YP_002489035.1 KEGG: kra:Krad_1656 flagellar hook-length control protein YP_002489036.1 PFAM: NLP/P60 protein; KEGG: kra:Krad_1655 lytic transglycosylase catalytic YP_002489037.1 TIGRFAM: flagellar export protein FliJ; KEGG: kra:Krad_1654 hypothetical protein YP_002489038.1 KEGG: lxx:Lxx06360 flagellum-like ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: ATPase AAA YP_002489039.1 KEGG: lxx:Lxx06350 hypothetical protein YP_002489040.1 PFAM: flagellar motor switch protein FliG; KEGG: lxx:Lxx06340 flagellar motor switch protein YP_002489041.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring domain protein; KEGG: lxx:Lxx06320 flagellar M-ring protein YP_002489042.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: kra:Krad_1649 flagellar hook-basal body complex subunit FliE YP_002489043.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: kra:Krad_1648 hypothetical protein YP_002489044.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: kra:Krad_1647 flagellar basal-body rod protein FlgB YP_002489045.1 KEGG: nca:Noca_0763 hypothetical protein YP_002489046.1 PFAM: flagellar protein FliS; KEGG: kra:Krad_1628 flagellar protein FliS YP_002489047.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: nca:Noca_0765 flagellar hook-associated 2 domain-containing protein YP_002489048.1 PFAM: flagellin domain protein; KEGG: nca:Noca_0766 flagellin domain-containing protein YP_002489049.1 PFAM: FlgN family protein; KEGG: kra:Krad_1623 hypothetical protein YP_002489050.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: ace:Acel_0832 flagellar hook-associated protein FlgK YP_002489051.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: lxx:Lxx06190 flagellar hook-associated protein 3 YP_002489052.1 PFAM: protein of unknown function DUF180; KEGG: kra:Krad_1619 hypothetical protein YP_002489053.1 KEGG: aau:AAur_0272 lipoprotein YP_002489054.1 KEGG: aau:AAur_0937 hypothetical protein YP_002489055.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_2015 enterobactin-iron ABC transporter, ATP-binding protein YP_002489056.1 PFAM: periplasmic binding protein; KEGG: aau:AAur_2016 ABC-type Fe3+ transporter YP_002489057.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome YP_002489058.1 SMART: helix-turn-helix domain protein; KEGG: art:Arth_0445 XRE family transcriptional regulator YP_002489059.1 PFAM: aldo/keto reductase; KEGG: kra:Krad_2709 aldo/keto reductase YP_002489060.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_3310 short-chain dehydrogenase/reductase SDR YP_002489061.1 PFAM: conserved hypothetical protein; KEGG: krh:KRH_15180 hypothetical membrane protein YP_002489062.1 KEGG: sen:SACE_6240 hypothetical protein YP_002489063.1 PFAM: transcriptional regulator PadR family protein; KEGG: aau:AAur_3848 PadR family transcriptional regulator YP_002489064.1 PFAM: conserved hypothetical protein; KEGG: aau:AAur_3849 hypothetical protein YP_002489065.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: saq:Sare_4875 ABC transporter YP_002489066.1 PFAM: ABC transporter; KEGG: aau:AAur_3851 ABC transporter efflux permease YP_002489067.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: art:Arth_1990 CDP-alcohol phosphatidyltransferase YP_002489068.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_3309 alpha/beta hydrolase fold YP_002489069.1 KEGG: mlo:mll8342 hypothetical protein YP_002489070.1 PFAM: glutamate--cysteine ligase; KEGG: sma:SAV_751 carboxylate-amine ligase YP_002489071.1 KEGG: art:Arth_3531 hypothetical protein YP_002489072.1 PFAM: GAF domain protein; ANTAR domain protein; KEGG: aau:AAur_1145 ANTAR domain-containing protein YP_002489073.1 TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: oan:Oant_4664 chromate transporter chromate ion transporter (CHR) family YP_002489074.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aau:AAur_3629 thioredoxin-disulfide reductase YP_002489075.1 KEGG: aau:AAur_0324 EAL domain-containing protein YP_002489076.1 KEGG: art:Arth_3334 hypothetical protein YP_002489077.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH YP_002489078.1 PFAM: alpha/beta hydrolase fold; KEGG: cmi:CMM_1933 arylesterase YP_002489079.1 PFAM: ANTAR domain protein; PAS fold-3 domain protein; KEGG: art:Arth_3244 PAS/PAC sensor protein YP_002489080.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: art:Arth_0197 copper-translocating P-type ATPase YP_002489081.1 KEGG: aau:AAur_pTC20027 hypothetical protein YP_002489082.1 PFAM: protein of unknown function DUF305; KEGG: art:Arth_4192 protein of unknown function DUF305 YP_002489083.1 PFAM: protein-tyrosine phosphatase, low molecular weight; KEGG: art:Arth_3227 protein tyrosine phosphatase YP_002489084.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: art:Arth_3228 cell envelope-related transcriptional attenuator YP_002489085.1 KEGG: art:Arth_1057 alkaline phosphatase YP_002489086.1 PFAM: phosphoglycerate mutase; KEGG: aau:AAur_0952 phosphoglycerate mutase family protein YP_002489087.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: aau:AAur_0951 carbohydrate kinase family protein YP_002489088.1 PFAM: heat shock protein Hsp20; KEGG: aau:AAur_1187 heat shock protein YP_002489089.1 KEGG: fal:FRAAL0702 hypothetical protein YP_002489090.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: art:Arth_3230 oligopeptidase B YP_002489091.1 KEGG: art:Arth_3236 hypothetical protein YP_002489092.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: art:Arth_3237 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002489093.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_3234 GCN5-related N-acetyltransferase YP_002489094.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_002489095.1 KEGG: art:Arth_3239 hypothetical protein YP_002489096.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_002489097.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: art:Arth_3246 uncharacterized domain 1 YP_002489098.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: art:Arth_3247 phenylacetate-CoA ligase YP_002489099.1 PFAM: regulatory protein TetR; KEGG: art:Arth_3248 TetR family transcriptional regulator YP_002489101.1 KEGG: sgr:SGR_784 hypothetical protein YP_002489102.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_3251 glyoxalase/bleomycin resistance protein/dioxygenase YP_002489103.1 catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA YP_002489104.1 PFAM: thioesterase superfamily protein; KEGG: art:Arth_3256 uncharacterized domain 1 YP_002489105.1 KEGG: art:Arth_3257 lipoprotein YP_002489106.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: art:Arth_3261 hypothetical protein YP_002489107.1 KEGG: art:Arth_3262 protein tyrosine/serine phosphatase YP_002489108.1 KEGG: aau:AAur_3256 hypothetical protein YP_002489109.1 KEGG: art:Arth_3264 GCN5-related N-acetyltransferase YP_002489110.1 KEGG: aau:AAur_0567 hypothetical protein YP_002489111.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: art:Arth_3266 3-hydroxybutyryl-CoA dehydrogenase YP_002489112.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: art:Arth_3267 short chain enoyl-CoA hydratase YP_002489113.1 KEGG: art:Arth_3268 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_002489114.1 KEGG: art:Arth_3269 pentapeptide repeat protein YP_002489115.1 KEGG: aau:AAur_3262 hypothetical protein YP_002489116.1 PFAM: CsbD family protein; KEGG: art:Arth_3271 CsbD family protein YP_002489117.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002489118.1 PFAM: dienelactone hydrolase; KEGG: art:Arth_3272 dienelactone hydrolase YP_002489119.1 PFAM: amino acid permease-associated region; KEGG: aau:AAur_3263 L-asparagine permease YP_002489120.1 TIGRFAM: Mn2+/Fe2+ transporter NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: aau:AAur_pTC20050 H(+)-stimulated Mn2+/Fe2+ transporter YP_002489121.1 PFAM: hypothetical protein; KEGG: art:Arth_3281 abortive infection protein YP_002489122.1 KEGG: hypothetical protein YP_002489123.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: tte:TTE1936 sugar permeases YP_002489124.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: tte:TTE1937 ABC-type sugar transporters, permeases YP_002489125.1 PFAM: extracellular solute-binding protein family 1; KEGG: tte:TTE1938 sugar-binding periplasmic protein YP_002489126.1 KEGG: art:Arth_3282 hypothetical protein YP_002489127.1 TIGRFAM: naphthoate synthase; PFAM: enoyl-CoA hydratase/isomerase; KEGG: art:Arth_3283 1,4-dihydroxy-2-naphthoate synthase YP_002489128.1 PFAM: AMP-dependent synthetase and ligase; KEGG: art:Arth_3284 AMP-dependent synthetase and ligase YP_002489129.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_002489130.1 KEGG: art:Arth_3286 hypothetical protein YP_002489131.1 KEGG: art:Arth_3287 hypothetical protein YP_002489132.1 KEGG: aau:AAur_3281 hypothetical protein YP_002489133.1 KEGG: aau:AAur_3280 GTPase of unknown function YP_002489134.1 KEGG: aau:AAur_3282 hypothetical protein YP_002489135.1 KEGG: maq:Maqu_3464 dentin sialophosphoprotein YP_002489136.1 PFAM: regulatory protein LuxR; KEGG: aau:AAur_3284 transcriptional regulator YP_002489137.1 PFAM: heat shock protein 70; KEGG: aau:AAur_3285 DnaK family protein YP_002489138.1 TIGRFAM: cytochrome C biogenesis protein CcsB; PFAM: cytochrome C assembly protein; KEGG: art:Arth_3289 cytochrome C assembly protein YP_002489139.1 PFAM: ResB family protein; KEGG: art:Arth_3290 ResB family protein YP_002489140.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: aau:AAur_3288 cytochrome C biogenesis membrane protein YP_002489141.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: art:Arth_3292 redoxin domain protein YP_002489142.1 PFAM: phosphoglycerate mutase; KEGG: art:Arth_3293 phosphoglycerate mutase YP_002489143.1 PFAM: YceI family protein; KEGG: art:Arth_3294 YceI family protein YP_002489144.1 KEGG: aau:AAur_3292 hypothetical protein YP_002489145.1 KEGG: art:Arth_3295 hypothetical protein YP_002489146.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002489147.1 PFAM: glutaredoxin 2; KEGG: art:Arth_3298 glutaredoxin 2 YP_002489148.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: haloacid dehalogenase; KEGG: art:Arth_3299 HAD-superfamily subfamily IB hydrolase, TIGR01490 YP_002489149.1 TIGRFAM: excisionase; KEGG: art:Arth_3301 phage transcriptional regulator, AlpA YP_002489150.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002489151.1 PFAM: acetyl xylan esterase; KEGG: art:Arth_3303 acetyl xylan esterase YP_002489152.1 PFAM: protein of unknown function DUF162; KEGG: krh:KRH_04380 hypothetical protein YP_002489153.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: msm:MSMEG_0594 iron-sulfur cluster binding protein YP_002489154.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: krh:KRH_04360 hypothetical protein YP_002489155.1 PFAM: carbohydrate kinase FGGY; KEGG: art:Arth_3304 carbohydrate kinase, FGGY YP_002489156.1 TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aau:AAur_3716 short chain dehydrogenase YP_002489157.1 TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aau:AAur_3715 L-rhamnose isomerase YP_002489158.1 PFAM: protein of unknown function DUF718; KEGG: art:Arth_3307 protein of unknown function DUF718 YP_002489159.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_3308 transcriptional regulator, LacI family YP_002489160.1 KEGG: art:Arth_3312 YesU YP_002489161.1 PFAM: lipolytic protein G-D-S-L family; KEGG: art:Arth_3313 lipolytic enzyme, G-D-S-L family YP_002489162.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3314 binding-protein-dependent transport systems inner membrane component YP_002489163.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3315 binding-protein-dependent transport systems inner membrane component YP_002489164.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1 YP_002489166.1 PFAM: protein of unknown function DUF624; KEGG: art:Arth_3317 protein of unknown function DUF624 YP_002489167.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: art:Arth_3318 oxidoreductase YP_002489168.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: art:Arth_1969 alpha-L-rhamnosidase YP_002489169.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3326 extracellular solute-binding protein, family 1 YP_002489170.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: art:Arth_3320 major facilitator superfamily MFS_1 YP_002489171.1 KEGG: art:Arth_3321 hypothetical protein YP_002489172.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3322 binding-protein-dependent transport systems inner membrane component YP_002489173.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3323 binding-protein-dependent transport systems inner membrane component YP_002489174.1 PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_3309 extracellular solute-binding domain-containing protein YP_002489175.1 PFAM: glycoside hydrolase family 42 domain protein; beta-galactosidase trimerisation domain protein; beta-galactosidase domain protein; KEGG: art:Arth_3325 beta-galactosidase YP_002489177.1 SMART: HNH nuclease; KEGG: aau:AAur_0313 hypothetical protein YP_002489178.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3326 extracellular solute-binding protein, family 1 YP_002489179.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3327 binding-protein-dependent transport systems inner membrane component YP_002489180.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3328 binding-protein-dependent transport systems inner membrane component YP_002489181.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3329 extracellular solute-binding protein, family 1 YP_002489182.1 KEGG: art:Arth_3330 hypothetical protein YP_002489183.1 PFAM: oxidoreductase; KEGG: art:Arth_3331 oxidoreductase YP_002489184.1 KEGG: aau:AAur_3316 hypothetical protein YP_002489185.1 PFAM: aldehyde dehydrogenase; KEGG: aau:AAur_3317 fatty aldehyde dehydrogenase YP_002489186.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: art:Arth_3336 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein YP_002489187.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_002489188.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: art:Arth_3338 NAD-dependent epimerase/dehydratase YP_002489189.1 PFAM: oxidoreductase; oxidoreductase domain; KEGG: art:Arth_3339 oxidoreductase YP_002489190.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_3340 transcriptional regulator, LacI family YP_002489191.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: art:Arth_3343 L-lactate dehydrogenase (cytochrome) YP_002489192.1 PFAM: regulatory protein ArsR; KEGG: art:Arth_3344 ArsR family transcriptional regulator YP_002489193.1 PFAM: histone deacetylase superfamily; KEGG: art:Arth_3345 histone deacetylase superfamily YP_002489194.1 PFAM: cation transporter; KEGG: art:Arth_3346 cation transporter YP_002489195.1 PFAM: TrkA-N domain protein; KEGG: art:Arth_3347 TrkA-N domain protein YP_002489196.1 KEGG: art:Arth_3348 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_002489197.1 PFAM: Ppx/GppA phosphatase; KEGG: art:Arth_3352 Ppx/GppA phosphatase YP_002489198.1 KEGG: art:Arth_3353 hypothetical protein YP_002489199.1 KEGG: art:Arth_3355 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein YP_002489200.1 PFAM: methyltransferase small; KEGG: art:Arth_3358 methyltransferase small YP_002489201.1 KEGG: art:Arth_3361 hypothetical protein YP_002489202.1 KEGG: art:Arth_3364 hypothetical protein YP_002489203.1 PFAM: rhodanese; KEGG: art:Arth_3365 hypothetical protein YP_002489204.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_3366 GCN5-related N-acetyltransferase YP_002489205.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: art:Arth_3367 DEAD/DEAH box helicase YP_002489206.1 KEGG: aau:AAur_3342 hypothetical protein YP_002489207.1 KEGG: art:Arth_3368 TadE family protein YP_002489208.1 KEGG: art:Arth_3369 hypothetical protein YP_002489209.1 PFAM: type II secretion system protein; KEGG: art:Arth_3370 type II secretion system protein YP_002489210.1 KEGG: art:Arth_3371 hypothetical protein YP_002489211.1 PFAM: type II secretion system protein E; KEGG: art:Arth_3372 type II secretion system protein E YP_002489212.1 KEGG: art:Arth_3373 hypothetical protein YP_002489213.1 PFAM: DNA-directed DNA polymerase; KEGG: art:Arth_3374 DNA-directed DNA polymerase YP_002489214.1 KEGG: aau:AAur_3349 hypothetical protein YP_002489215.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_3375 NUDIX hydrolase YP_002489216.1 KEGG: aau:AAur_3351 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III/Nth; SMART: iron-sulfur cluster loop YP_002489217.1 KEGG: art:Arth_3377 hypothetical protein YP_002489218.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: aau:AAur_3353 acetate--CoA ligase YP_002489219.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3379 extracellular solute-binding protein YP_002489220.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3380 binding-protein-dependent transport systems inner membrane component YP_002489221.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3381 binding-protein-dependent transport systems inner membrane component YP_002489222.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: art:Arth_3382 DeoR family transcriptional regulator YP_002489223.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_3383 transcriptional regulator, LacI family YP_002489224.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002489225.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; colicin V production protein; KEGG: art:Arth_3394 colicin V production protein YP_002489226.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: aau:AAur_3365 cyclic nucleotide-binding domain-containing protein YP_002489227.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_3396 NUDIX hydrolase YP_002489228.1 PFAM: endoribonuclease L-PSP; KEGG: art:Arth_3397 endoribonuclease L-PSP YP_002489229.1 KEGG: art:Arth_3398 hypothetical protein YP_002489230.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: art:Arth_3399 glycosyl transferase, family 51 YP_002489231.1 PFAM: metallophosphoesterase; KEGG: art:Arth_3400 metallophosphoesterase YP_002489232.1 PFAM: ABC transporter transmembrane protein; ABC transporter related; SMART: ATPase AAA; KEGG: aau:AAur_3378 ABC transporter ATP-binding protein YP_002489233.1 PFAM: ABC transporter transmembrane protein; ABC transporter related; SMART: ATPase AAA; KEGG: art:Arth_3403 ABC transporter related YP_002489234.1 KEGG: aau:AAur_3381 hypothetical protein YP_002489235.1 PFAM: helix-turn-helix domain protein; KEGG: art:Arth_3404 XRE family transcriptional regulator YP_002489236.1 KEGG: aau:AAur_3383 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_002489237.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002489238.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: aau:AAur_0515 molybdopterin oxidoreductase YP_002489239.1 PFAM: L-asparaginase II; KEGG: art:Arth_3408 L-asparaginase II YP_002489240.1 KEGG: art:Arth_3409 hypothetical protein YP_002489241.1 KEGG: bwe:BcerKBAB4_2555 hypothetical protein YP_002489242.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_3411 short-chain dehydrogenase/reductase SDR YP_002489243.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: aau:AAur_3389 hydantoin racemase YP_002489244.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: art:Arth_3413 permease for cytosine/purines, uracil, thiamine, allantoin YP_002489245.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1 YP_002489246.1 KEGG: art:Arth_3415 molybdenum cofactor cytidylyltransferase YP_002489247.1 KEGG: art:Arth_3416 hypothetical protein YP_002489248.1 PFAM: aldo/keto reductase; KEGG: art:Arth_3419 aldo/keto reductase YP_002489249.1 KEGG: art:Arth_3495 hypothetical protein YP_002489250.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: art:Arth_3420 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_002489251.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: art:Arth_3421 molybdopterin dehydrogenase, FAD-binding YP_002489252.1 PFAM: protein of unknown function DUF182; KEGG: art:Arth_3422 protein of unknown function DUF182 YP_002489253.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: aau:AAur_3397 xanthine/uracil permease family protein YP_002489254.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: aau:AAur_3398 cytidine/deoxycytidylate deaminase YP_002489255.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_002489256.1 TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: art:Arth_3426 hypothetical protein YP_002489258.1 KEGG: art:Arth_3427 urate oxidase; TIGRFAM: urate oxidase; PFAM: Uricase YP_002489259.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: art:Arth_3428 uracil-xanthine permease YP_002489260.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_3431 IclR family transcripitonal regulator YP_002489261.1 PFAM: amino acid-binding ACT domain protein; malic protein domain protein; malic protein NAD-binding; KEGG: art:Arth_3432 malate dehydrogenase (oxaloacetate-decarboxylating) YP_002489262.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_002489263.1 KEGG: art:Arth_3434 hypothetical protein YP_002489264.1 TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: aau:AAur_3409 hypothetical protein YP_002489265.1 PFAM: beta-lactamase; KEGG: art:Arth_3436 serine-type D-Ala-D-Ala carboxypeptidase YP_002489266.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_3437 alcohol dehydrogenase GroES domain protein YP_002489267.1 KEGG: art:Arth_3438 hypothetical protein YP_002489268.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: art:Arth_3439 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_002489269.1 KEGG: art:Arth_3440 hypothetical protein YP_002489270.1 PFAM: glycoside hydrolase 15-related; KEGG: art:Arth_3442 glycoside hydrolase 15-related protein YP_002489271.1 PFAM: protein of unknown function DUF72; KEGG: aau:AAur_0956 hypothetical protein YP_002489272.1 KEGG: art:Arth_3444 hypothetical protein YP_002489273.1 KEGG: sgo:SGO_0319 hypothetical protein YP_002489274.1 KEGG: ssa:SSA_0425 glycosyltransferase YP_002489275.1 KEGG: tfu:Tfu_1331 hypothetical protein YP_002489276.1 KEGG: tfu:Tfu_1332 hypothetical protein YP_002489277.1 KEGG: hau:Haur_2253 hypothetical protein YP_002489278.1 PFAM: alpha/beta hydrolase fold; KEGG: aau:AAur_3467 haloperoxidase YP_002489279.1 KEGG: rha:RHA1_ro05134 hypothetical protein YP_002489280.1 PFAM: fatty acid desaturase; KEGG: art:Arth_0195 fatty acid desaturase YP_002489281.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: art:Arth_0194 oxidoreductase FAD/NAD(P)-binding domain protein YP_002489282.1 PFAM: Luciferase-like monooxygenase; KEGG: art:Arth_3758 luciferase family protein YP_002489283.1 PFAM: protein of unknown function UPF0060; KEGG: art:Arth_4238 hypothetical protein YP_002489284.1 PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_2432 hypothetical protein YP_002489285.1 PFAM: protein of unknown function DUF202; KEGG: krh:KRH_02050 hypothetical membrane protein YP_002489286.1 KEGG: krh:KRH_02040 hypothetical membrane protein YP_002489287.1 KEGG: art:Arth_3470 hypothetical protein YP_002489288.1 KEGG: aau:AAur_0071 hypothetical protein YP_002489289.1 KEGG: art:Arth_3539 hypothetical protein YP_002489290.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_3540 major facilitator superfamily MFS_1 YP_002489291.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_3541 GntR family transcriptional regulator YP_002489292.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: art:Arth_3542 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002489293.1 PFAM: alpha/beta hydrolase fold; KEGG: stp:Strop_4389 alpha/beta hydrolase fold YP_002489294.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: art:Arth_3530 ammonium transporter YP_002489295.1 PFAM: transcriptional regulator PadR family protein; KEGG: aau:AAur_0518 PadR family transcriptional regulator YP_002489296.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: art:Arth_3526 glycosyl transferase, family 51 YP_002489297.1 SMART: HNH nuclease; KEGG: aau:AAur_0313 hypothetical protein YP_002489298.1 PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_1726 GCN5-related N-acetyltransferase YP_002489299.1 KEGG: art:Arth_3536 hypothetical protein YP_002489300.1 PFAM: glycoside hydrolase family 35; KEGG: ote:Oter_1364 beta-galactosidase YP_002489301.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: art:Arth_3552 activator of HSP90 ATPase 1 family protein YP_002489302.1 SMART: regulatory protein ArsR; KEGG: art:Arth_3553 regulatory protein, ArsR YP_002489303.1 KEGG: cms:CMS_1438 hypothetical protein YP_002489304.1 PFAM: ANTAR domain protein; KEGG: art:Arth_3173 GAF sensor protein YP_002489305.1 KEGG: art:Arth_3653 hypothetical protein YP_002489306.1 KEGG: aau:AAur_3451 hypothetical protein YP_002489307.1 PFAM: hypothetical protein; KEGG: art:Arth_2341 abortive infection protein YP_002489308.1 PFAM: protein of unknown function DUF322; KEGG: aau:AAur_3931 stress-like protein (gls24) YP_002489309.1 KEGG: aau:AAur_3932 hypothetical protein YP_002489310.1 KEGG: aau:AAur_3933 hypothetical protein YP_002489311.1 KEGG: aau:AAur_3934 hypothetical protein YP_002489312.1 KEGG: aau:AAur_3935 hypothetical protein YP_002489313.1 PFAM: CsbD family protein; KEGG: rsa:RSal33209_0465 hypothetical protein YP_002489314.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: aau:AAur_3937 RNA polymerase sigma (70) factor YP_002489315.1 KEGG: aau:AAur_3938 hypothetical protein YP_002489316.1 KEGG: aau:AAur_3939 hypothetical protein YP_002489317.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_3139 transcriptional regulator, LacI family YP_002489318.1 PFAM: glycosyl hydrolase family 32; SMART: glycoside hydrolase family 32; KEGG: art:Arth_3140 glycosyl hydrolase family 32, N terminal domain protein YP_002489319.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3141 binding-protein-dependent transport systems inner membrane component YP_002489320.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3142 binding-protein-dependent transport systems inner membrane component YP_002489321.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3143 extracellular solute-binding protein YP_002489322.1 PFAM: peptidase S45 penicillin amidase; KEGG: aau:AAur_3669 penicillin amidase YP_002489323.1 KEGG: aau:AAur_3671 acetyltransferase YP_002489324.1 KEGG: art:Arth_3534 hypothetical protein YP_002489325.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_0255 alcohol dehydrogenase GroES domain protein YP_002489326.1 PFAM: cupin; KEGG: rha:RHA1_ro00566 hypothetical protein YP_002489327.1 SMART: helix-turn-helix domain protein; KEGG: art:Arth_3241 XRE family transcriptional regulator YP_002489328.1 PFAM: glucose sorbosone dehydrogenase; KEGG: cef:CE1282 glucose dehydrogenase-B YP_002489329.1 KEGG: aau:AAur_1441 ABC-type sulfonate transport system YP_002489330.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_1440 ABC-type nitrate/sulfonate/bicarbonate transporter, permease YP_002489331.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_1439 sulfonate ABC transporter ATP-binding protein YP_002489332.1 KEGG: aau:AAur_1438 nitrilotriacetate monooxygenase component A YP_002489333.1 KEGG: bra:BRADO4277 nitrilotriacetate monooxygenase component A (NtA monooxygenase component A) (NtA-MO A) YP_002489334.1 PFAM: aldo/keto reductase; KEGG: aau:AAur_1437 aldo/keto reductase family oxidoreductase YP_002489335.1 PFAM: UspA domain protein; KEGG: art:Arth_4023 UspA domain protein YP_002489336.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_0038 major facilitator superfamily MFS_1 YP_002489337.1 PFAM: protein of unknown function DUF817; KEGG: art:Arth_3567 protein of unknown function DUF817 YP_002489338.1 KEGG: art:Arth_3568 hypothetical protein YP_002489339.1 PFAM: Hpt domain protein; KEGG: aau:AAur_pTC20233 hypothetical protein YP_002489340.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_4785 acetyltransferase YP_002489341.1 KEGG: acl:ACL_0771 hypothetical protein YP_002489342.1 PFAM: ANTAR domain protein; PAS fold-3 domain protein; KEGG: rha:RHA1_ro03404 transcription antitermination regulator YP_002489345.1 PFAM: polysaccharide deacetylase; KEGG: art:Arth_3696 polysaccharide deacetylase YP_002489346.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: art:Arth_3697 permease for cytosine/purines, uracil, thiamine, allantoin YP_002489347.1 PFAM: purine catabolism PurC domain protein; KEGG: art:Arth_3698 transcriptional regulator, CdaR family YP_002489348.1 PFAM: beta-lactamase; KEGG: rsa:RSal33209_0207 beta-lactamase YP_002489349.1 PFAM: regulatory protein LysR; KEGG: stp:Strop_1459 regulatory protein, LysR YP_002489350.1 KEGG: saq:Sare_1419 beta-lactamase YP_002489351.1 PFAM: regulatory protein MarR; regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_3729 IclR family transcripitonal regulator YP_002489352.1 PFAM: creatinase; peptidase M24; KEGG: art:Arth_3728 creatinase YP_002489353.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_3823 major facilitator transporter YP_002489354.1 KEGG: art:Arth_0326 hypothetical protein YP_002489355.1 PFAM: aldehyde dehydrogenase; KEGG: aau:AAur_1075 aldehyde dehydrogenase (NAD) family protein YP_002489356.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aau:AAur_1076 short chain dehydrogenase/reductase family oxidoreductase YP_002489357.1 PFAM: dihydrodipicolinate synthetase; KEGG: aau:AAur_1077 dihydrodipicolinate synthetase YP_002489358.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: art:Arth_1079 enoyl-CoA hydratase/isomerase YP_002489359.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: art:Arth_1080 formyl-CoA transferase YP_002489360.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: art:Arth_1081 FAD dependent oxidoreductase YP_002489361.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_1081 alpha-ketoglutarate permease YP_002489362.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: art:Arth_1083 transcriptional regulator, XRE family with cupin sensor YP_002489363.1 KEGG: art:Arth_2331 hypothetical protein YP_002489364.1 KEGG: art:Arth_2330 hypothetical protein YP_002489365.1 PFAM: cation efflux protein; KEGG: art:Arth_4236 cation efflux protein YP_002489366.1 PFAM: regulatory protein ArsR; transcriptional regulator TrmB; KEGG: art:Arth_4237 ArsR family transcriptional regulator YP_002489368.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: art:Arth_3572 Na+/H+ antiporter YP_002489369.1 KEGG: aau:AAur_3410 hypothetical protein YP_002489370.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_3219 PhnB protein YP_002489371.1 KEGG: aau:AAur_3410 hypothetical protein YP_002489372.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sgr:SGR_5582 hypothetical protein YP_002489373.1 KEGG: art:Arth_3619 hypothetical protein YP_002489374.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_1991 GCN5-related N-acetyltransferase YP_002489375.1 PFAM: protein of unknown function UPF0157; KEGG: kra:Krad_2751 hypothetical protein YP_002489376.1 KEGG: art:Arth_3846 hypothetical protein YP_002489378.1 PFAM: patatin; KEGG: aau:AAur_3745 hypothetical protein YP_002489379.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: art:Arth_3590 RpiR family transcriptional regulator YP_002489380.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: art:Arth_3591 6-phosphogluconate dehydrogenase, NAD-binding YP_002489381.1 PFAM: aldehyde dehydrogenase; KEGG: art:Arth_3592 aldehyde dehydrogenase YP_002489382.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: art:Arth_3593 amidohydrolase YP_002489383.1 KEGG: art:Arth_3594 hypothetical protein YP_002489384.1 KEGG: art:Arth_3601 protoporphyrinogen oxidase YP_002489385.1 KEGG: aau:AAur_3633 integral membrane protein YP_002489386.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_2018 LysR family transcriptional regulator YP_002489387.1 PFAM: protein of unknown function DUF453; KEGG: art:Arth_2019 methylitaconate delta2-delta3-isomerase YP_002489388.1 PFAM: citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: aau:AAur_1966 dicarboxylate carrier protein YP_002489389.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: mex:Mext_4403 choline/carnitine/betaine transporter YP_002489390.1 KEGG: art:Arth_3623 hypothetical protein YP_002489391.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_3624 ABC transporter YP_002489392.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: art:Arth_1904 peptidase S1 and S6, chymotrypsin/Hap YP_002489393.1 KEGG: art:Arth_2439 hypothetical protein YP_002489394.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_3625 alpha/beta hydrolase fold YP_002489395.1 KEGG: art:Arth_3178 S-layer domain protein domain protein YP_002489396.1 TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; KEGG: art:Arth_3627 methionine synthase (B12-dependent) YP_002489397.1 PFAM: protein of unknown function DUF450; KEGG: art:Arth_3617 protein of unknown function DUF450 YP_002489399.1 KEGG: rsa:RSal33209_0259 hypothetical protein YP_002489400.1 KEGG: art:Arth_0637 hypothetical protein YP_002489401.1 PFAM: ABC transporter transmembrane protein; ABC transporter related; SMART: ATPase AAA; KEGG: art:Arth_3638 ABC transporter transmembrane protein YP_002489402.1 PFAM: ABC transporter transmembrane protein; ABC transporter related; SMART: ATPase AAA; KEGG: art:Arth_3639 ABC transporter related YP_002489404.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: bay:RBAM_031880 transporter YP_002489405.1 PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2 YP_002489406.1 TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: dimethylmenaquinone methyltransferase; KEGG: lch:Lcho_3633 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase YP_002489407.1 PFAM: amidohydrolase 2; KEGG: dac:Daci_4449 amidohydrolase 2 YP_002489408.1 PFAM: protein of unknown function DUF453; KEGG: rpd:RPD_0988 hypothetical protein YP_002489409.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sma:SAV_1619 GntR family transcriptional regulator YP_002489410.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: cmi:CMM_1237 NDP-sugar phosphate epimerase YP_002489411.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: stp:Strop_2054 catalase/peroxidase HPI YP_002489412.1 PFAM: beta-lactamase; KEGG: fre:Franean1_4530 beta-lactamase domain-containing protein YP_002489413.1 PFAM: helix-turn-helix domain protein; KEGG: aau:AAur_0354 helix-turn-helix domain-containing protein YP_002489414.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002489415.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro00454 polyketide synthesis monooxygenase YP_002489416.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: art:Arth_1582 short-chain dehydrogenase/reductase SDR YP_002489418.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bsu:BSU39120 hypothetical protein YP_002489419.1 PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_3973 transmembrane efflux protein (MFS) YP_002489420.1 PFAM: helix-turn-helix domain protein; KEGG: aau:AAur_3974 DNA-binding protein YP_002489421.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aau:AAur_0367 lactoylglutathione lyase YP_002489422.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rha:RHA1_ro02875 LacI family transcription regulator YP_002489423.1 PFAM: dihydrodipicolinate synthetase; KEGG: kpe:KPK_5052 dihydrodipicolinate synthetase family protein YP_002489424.1 PFAM: natural resistance-associated macrophage protein; KEGG: rha:RHA1_ro02877 manganese transporter NRAMP YP_002489425.1 KEGG: art:Arth_4069 hypothetical protein YP_002489426.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: aau:AAur_4184 two-component system response regulator YP_002489427.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: aau:AAur_4185 signal transduction histidine kinase YP_002489428.1 PFAM: protein of unknown function DUF214; KEGG: aau:AAur_4186 ABC transporter permease YP_002489429.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_4150 ABC transporter YP_002489430.1 KEGG: aau:AAur_0636 BNR/Asp-box repeat-containing protein; TIGRFAM: conserved repeat domain protein; PFAM: glycosyl hydrolase BNR repeat-containing protein YP_002489431.1 KEGG: art:Arth_0189 exo-alpha-sialidase YP_002489432.1 KEGG: sde:Sde_3926 UDP-N-acetylglucosamine pyrophosphorylase YP_002489433.1 PFAM: extracellular solute-binding protein family 5; KEGG: art:Arth_0188 extracellular solute-binding protein YP_002489434.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_0828 ABC-type dipeptide/oligopeptide transporters, permeases YP_002489435.1 PFAM: binding-protein-dependent transporters inner membrane component; ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: art:Arth_0186 ABC transporter related YP_002489436.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_0185 ABC transporter YP_002489437.1 PFAM: dihydrodipicolinate synthetase; KEGG: art:Arth_0184 dihydrodipicolinate synthase YP_002489438.1 PFAM: ROK family protein; KEGG: art:Arth_0183 ROK family protein YP_002489439.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_002489440.1 KEGG: art:Arth_0181 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; amidohydrolase YP_002489441.1 KEGG: art:Arth_1098 hypothetical protein YP_002489442.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: art:Arth_1097 hypothetical protein YP_002489443.1 KEGG: aau:AAur_0265 hypothetical protein YP_002489445.1 PFAM: protein of unknown function DUF1272; KEGG: eca:ECA1279 hypothetical protein YP_002489446.1 KEGG: aau:AAur_0272 lipoprotein YP_002489447.1 KEGG: rha:RHA1_ro03172 hypothetical protein YP_002489448.1 KEGG: dra:DR_1108 hypothetical protein YP_002489450.1 KEGG: aau:AAur_0663 riboflavin biosynthesis protein RibD YP_002489451.1 PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: art:Arth_0180 glucosamine/galactosamine-6-phosphate isomerase YP_002489452.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_0179 GntR family transcriptional regulator YP_002489453.1 KEGG: art:Arth_1064 integral membrane protein YP_002489454.1 PFAM: ATP-binding region ATPase domain protein; KEGG: art:Arth_3494 histidine kinase YP_002489455.1 PFAM: NADPH-dependent FMN reductase; KEGG: aau:AAur_4020 NADPH-dependent FMN reductase protein YP_002489456.1 KEGG: art:Arth_3673 hypothetical protein YP_002489457.1 PFAM: polysaccharide deacetylase; KEGG: xau:Xaut_3117 polysaccharide deacetylase YP_002489458.1 PFAM: cyclase/dehydrase; KEGG: art:Arth_3967 cyclase/dehydrase YP_002489459.1 KEGG: art:Arth_3679 FG-GAP repeat protein YP_002489460.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_1763 major facilitator superfamily MFS_1 YP_002489461.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bbt:BBta_1646 hypothetical protein YP_002489462.1 PFAM: protein of unknown function DUF161; KEGG: kra:Krad_3745 hypothetical protein YP_002489463.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: aau:AAur_4022 NADP oxidoreductase coenzyme F420-dependent family protein YP_002489464.1 KEGG: art:Arth_3389 hypothetical protein YP_002489465.1 KEGG: art:Arth_3778 hypothetical protein YP_002489466.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_002489467.1 KEGG: art:Arth_3676 hypothetical protein YP_002489468.1 PFAM: thymidylate kinase; KEGG: art:Arth_0056 thymidylate kinase YP_002489469.1 PFAM: sodium:dicarboxylate symporter; KEGG: aau:AAur_3387 C4-dicarboxylate transporter YP_002489470.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: sco:SCO6669 transcriptional regulator YP_002489471.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro03908 aromatic acid symporter YP_002489472.1 PFAM: amidohydrolase; KEGG: art:Arth_0181 N-acetylglucosamine-6-phosphate deacetylase YP_002489473.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: art:Arth_0370 HNH nuclease YP_002489474.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: cms:CMS_1124 hypothetical protein YP_002489476.1 KEGG: art:Arth_2282 hypothetical protein YP_002489477.1 KEGG: art:Arth_3677 hypothetical protein YP_002489478.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_3775 AsnC family transcriptional regulator YP_002489479.1 KEGG: aau:AAur_3553 metal-dependent amidase/aminoacylase/carboxypeptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002489480.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_3554 major facilitator transporter YP_002489481.1 PFAM: protein of unknown function DUF808; KEGG: art:Arth_1870 protein of unknown function DUF808 YP_002489482.1 PFAM: xylose isomerase; KEGG: aau:AAur_3506 hydroxypyruvate isomerase YP_002489483.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: aau:AAur_3507 2-hydroxy-3-oxopropionate reductase YP_002489484.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate YP_002489485.1 PFAM: glycerate kinase; KEGG: art:Arth_3692 glycerate kinase YP_002489486.1 KEGG: art:Arth_3693 allantoinase; TIGRFAM: allantoinase; PFAM: amidohydrolase; amidohydrolase YP_002489487.1 PFAM: transcriptional regulator; KEGG: art:Arth_3694 response regulator receiver protein YP_002489488.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: art:Arth_3695 redoxin domain protein YP_002489489.1 PFAM: Spore coat protein CotH; KEGG: cgt:cgR_0079 hypothetical protein YP_002489490.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: art:Arth_3695 redoxin domain protein YP_002489491.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_3711 GCN5-related N-acetyltransferase YP_002489492.1 KEGG: art:Arth_0067 hypothetical protein YP_002489494.1 KEGG: art:Arth_3719 hypothetical protein YP_002489495.1 PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aau:AAur_3513 two-component system response regulator YP_002489496.1 PFAM: glycosyl transferase family 2; KEGG: aau:AAur_3514 glycosyl transferase, group 2 family protein YP_002489497.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: aau:AAur_3515 anti-sigma factor antagonist YP_002489498.1 KEGG: aau:AAur_3516 hypothetical protein YP_002489499.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aau:AAur_3948 two-component sensor histidine kinase YP_002489500.1 TIGRFAM: OHCU decarboxylase; KEGG: art:Arth_3732 hypothetical protein YP_002489501.1 TIGRFAM: hydroxyisourate hydrolase; PFAM: transthyretin; KEGG: art:Arth_3733 transthyretin YP_002489502.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_3712 IclR family transcripitonal regulator YP_002489503.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: aau:AAur_0477 choline/carnitine/betaine transporter YP_002489505.1 KEGG: aau:AAur_0488 hypothetical protein YP_002489506.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: aau:AAur_0486 GntR family transcriptional regulator YP_002489507.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; KEGG: aau:AAur_0485 formyltetrahydrofolate deformylase YP_002489508.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: aau:AAur_0484 N,N-dimethylglycine oxidase YP_002489509.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: aau:AAur_0483 formiminotetrahydrofolate cyclodeaminase YP_002489510.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: aau:AAur_0482 methylenetetrahydrofolatedehydrogenase / methenyltetrahydrofolate cyclohydrolase, bifunctional protein YP_002489511.1 PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: aau:AAur_0479 molybdopterin biosynthesis protein MoeA YP_002489512.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: aau:AAur_1024 formate dehydrogenase family accessory protein FdhD YP_002489513.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: sen:SACE_2777 organic anion transporter family protein YP_002489514.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: art:Arth_3718 FAD dependent oxidoreductase YP_002489515.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: art:Arth_3721 oxidoreductase alpha (molybdopterin) subunit YP_002489516.1 PFAM: beta-lactamase; KEGG: art:Arth_3722 beta-lactamase YP_002489517.1 TIGRFAM: mycothiol-dependent formaldehyde dehydrogenase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: art:Arth_3723 alcohol dehydrogenase, zinc-binding domain protein YP_002489518.1 KEGG: art:Arth_3734 hypothetical protein YP_002489519.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002489520.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002489521.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_3737 glyoxalase/bleomycin resistance protein/dioxygenase YP_002489522.1 KEGG: art:Arth_3738 hypothetical protein YP_002489523.1 KEGG: art:Arth_3739 hypothetical protein YP_002489524.1 KEGG: aau:AAur_3531 ClpA/ClpB family protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA; SMART: ATPase AAA YP_002489525.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: rsa:RSal33209_0025 secretory serine protease YP_002489526.1 PFAM: ABC transporter; TOBE domain protein; SMART: ATPase AAA; KEGG: art:Arth_3746 ABC transporter YP_002489527.1 TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3747 NifC-like ABC-type porter YP_002489528.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_3535 molybdate ABC transporter YP_002489529.1 TIGRFAM: excisionase; PFAM: regulatory protein MerR; TOBE domain protein; KEGG: art:Arth_3749 TOBE domain protein YP_002489530.1 KEGG: art:Arth_3751 hypothetical protein YP_002489531.1 KEGG: art:Arth_3752 lipoprotein YP_002489532.1 PFAM: protein of unknown function DUF307; KEGG: aau:AAur_3539 hypothetical protein YP_002489533.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: aau:AAur_3542 N-(5'phosphoribosyl)anthranilate isomerase YP_002489534.1 PFAM: protein of unknown function DUF886; KEGG: art:Arth_3760 protein of unknown function DUF886 YP_002489535.1 PFAM: ferritin; KEGG: aau:AAur_2834 ferritin family protein YP_002489536.1 PFAM: small multidrug resistance protein; KEGG: art:Arth_3764 small multidrug resistance protein YP_002489537.1 PFAM: small multidrug resistance protein; KEGG: art:Arth_3765 small multidrug resistance protein YP_002489538.1 KEGG: art:Arth_3768 phosphoribulokinase/uridine kinase YP_002489539.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: art:Arth_3743 glucose-methanol-choline oxidoreductase YP_002489540.1 PFAM: aldehyde dehydrogenase; KEGG: art:Arth_3744 aldehyde dehydrogenase (acceptor) YP_002489541.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: art:Arth_3745 choline/carnitine/betaine transporter YP_002489542.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: cmi:CMM_1082 monooxygenase YP_002489543.1 PFAM: beta-lactamase; KEGG: art:Arth_3771 beta-lactamase YP_002489544.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: art:Arth_3772 DEAD/DEAH box helicase YP_002489545.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: aau:AAur_3552 methyltransferase small subunit YP_002489546.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3774 major facilitator superfamily MFS_1 YP_002489547.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3781 major facilitator superfamily MFS_1 YP_002489548.1 KEGG: aau:AAur_3558 hypothetical protein YP_002489549.1 KEGG: art:Arth_3782 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_002489550.1 KEGG: art:Arth_3783 hypothetical protein YP_002489551.1 KEGG: art:Arth_3784 hypothetical protein YP_002489552.1 PFAM: protein of unknown function DUF1206; KEGG: art:Arth_3785 protein of unknown function DUF1206 YP_002489553.1 KEGG: art:Arth_3786 hypothetical protein YP_002489554.1 KEGG: aau:AAur_3560 hypothetical protein YP_002489555.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_3789 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002489556.1 PFAM: Secreted repeat of unknown function; KEGG: aau:AAur_3562 lipoprotein YP_002489557.1 KEGG: art:Arth_3791 hypothetical protein YP_002489558.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_3792 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002489559.1 KEGG: art:Arth_3793 protein tyrosine phosphatase, receptor type, F (predicted)-like protein YP_002489560.1 KEGG: art:Arth_3797 hypothetical protein YP_002489561.1 KEGG: art:Arth_3798 SNF2-related protein; PFAM: SNF2-related protein; helicase; zinc finger SWIM domain protein; SMART: DEAD-like helicases YP_002489562.1 KEGG: art:Arth_0227 glycoside hydrolase, family 43 YP_002489563.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: sen:SACE_6062 ammonium transporter YP_002489564.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: rha:RHA1_ro02830 transcriptional regulator YP_002489565.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_002489566.1 PFAM: FAD dependent oxidoreductase; KEGG: kra:Krad_4128 FAD dependent oxidoreductase YP_002489567.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: rha:RHA1_ro02817 glutamate synthase large subunit YP_002489568.1 KEGG: pmy:Pmen_3466 glutamate synthase (NADPH) GltB3 subunit YP_002489569.1 PFAM: glutamine amidotransferase class-II; KEGG: rha:RHA1_ro02819 glutamine amidotransferase-like protein YP_002489570.1 TIGRFAM: glutamine synthetaseII; PFAM: glutamine synthetase catalytic region; KEGG: rha:RHA1_ro02820 glutamate--ammonia ligase YP_002489571.1 PFAM: glycoside hydrolase; KEGG: hau:Haur_3463 glycoside hydrolase family 3 protein YP_002489572.1 KEGG: nar:Saro_0709 hypothetical protein YP_002489573.1 KEGG: nar:Saro_3571 hypothetical protein YP_002489574.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: fal:FRAAL4641 pyranose oxidase precursor (glucose 2-oxidase) YP_002489575.1 PFAM: glycoside hydrolase family 35; KEGG: ccr:CC_2801 hypothetical protein YP_002489576.1 PFAM: glycoside hydrolase family 43; KEGG: nar:Saro_2914 glycoside hydrolase family protein YP_002489577.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bay:RBAM_027210 AmyC YP_002489578.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bpu:BPUM_1752 sugar ABC transporter ATP-binding/membrane protein YP_002489579.1 PFAM: extracellular solute-binding protein family 1; KEGG: tpd:Teth39_0607 extracellular solute-binding protein YP_002489580.1 PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 2 sugar binding; KEGG: nar:Saro_1727 glycoside hydrolase family protein YP_002489581.1 PFAM: major facilitator superfamily MFS_1; KEGG: kra:Krad_0275 EmrB/QacA family drug resistance transporter YP_002489582.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: nca:Noca_0221 flavin reductase domain-containing protein YP_002489583.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sco:SCO6309 LysR family transcriptional regulator YP_002489584.1 PFAM: Luciferase-like monooxygenase; KEGG: mav:MAV_0881 hypothetical protein YP_002489585.1 PFAM: glycoside hydrolase; KEGG: scl:sce6897 hypothetical protein YP_002489586.1 PFAM: regulatory protein TetR; KEGG: nar:Saro_0451 TetR family transcriptional regulator YP_002489587.1 KEGG: rha:RHA1_ro11050 hypothetical protein YP_002489588.1 KEGG: aau:AAur_pTC20160 hypothetical protein YP_002489589.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rxy:Rxyl_2243 catechol 2,3-dioxygenase YP_002489590.1 PFAM: fumarylacetoacetate hydrolase; KEGG: sco:SCO6308 hydrolase YP_002489591.1 KEGG: sco:SCO6307 cyclase SCIF309c YP_002489592.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sco:SCO6306 hypothetical protein YP_002489593.1 PFAM: amidohydrolase 2; KEGG: sco:SCO6305 hypothetical protein YP_002489594.1 PFAM: fumarylacetoacetate hydrolase; KEGG: rxy:Rxyl_2238 fumarylacetoacetate hydrolase YP_002489595.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nfa:nfa32630 transcriptional regulator YP_002489596.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; KEGG: art:Arth_1234 LuxR family transcriptional regulator YP_002489597.1 KEGG: art:Arth_1233 hypothetical protein YP_002489598.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_1232 glycosyl transferase, family 2 YP_002489599.1 PFAM: polysaccharide deacetylase; KEGG: art:Arth_1231 polysaccharide deacetylase YP_002489600.1 PFAM: polysaccharide deacetylase; KEGG: art:Arth_1230 polysaccharide deacetylase YP_002489601.1 KEGG: art:Arth_1229 chitinase YP_002489602.1 KEGG: art:Arth_1228 hypothetical protein YP_002489603.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: art:Arth_1226 NAD-dependent epimerase/dehydratase YP_002489604.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: art:Arth_1225 UDP-glucose/GDP-mannose dehydrogenase YP_002489605.1 PFAM: regulatory protein LuxR; KEGG: art:Arth_1224 LuxR family transcriptional regulator YP_002489606.1 PFAM: regulatory protein LuxR; KEGG: art:Arth_1223 LuxR family transcriptional regulator YP_002489607.1 KEGG: sgr:SGR_882 hypothetical protein YP_002489608.1 PFAM: regulatory protein GntR HTH; regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; hypothetical protein; KEGG: aau:AAur_3940 ribose/arabinose operon repressor YP_002489609.1 KEGG: rlt:Rleg2_5337 heparinase II/III family protein YP_002489610.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sgr:SGR_2768 2-hydroxyacid family dehydrogenase YP_002489611.1 PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF2234 sugar ABC transporter sugar-binding protein YP_002489612.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: efa:EF2233 ABC transporter permease YP_002489613.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: efa:EF2232 ABC transporter permease YP_002489614.1 KEGG: efa:EF2231 hypothetical protein YP_002489615.1 PFAM: glycoside hydrolase family 35; KEGG: cmi:CMM_2700 beta-galactosidase YP_002489616.1 KEGG: aau:AAur_3622 hypothetical protein YP_002489617.1 catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine YP_002489618.1 PFAM: regulatory protein TetR; KEGG: art:Arth_3503 TetR family transcriptional regulator YP_002489619.1 PFAM: CsbD family protein; KEGG: art:Arth_3578 CsbD family protein YP_002489620.1 PFAM: protein of unknown function DUF1345; KEGG: art:Arth_4121 protein of unknown function DUF1345 YP_002489621.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: art:Arth_3504 AraC family transcriptional regulator YP_002489622.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_002489623.1 PFAM: AmiS/UreI transporter; KEGG: art:Arth_3506 AmiS/UreI transporter YP_002489624.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_3507 amino acid permease-associated region YP_002489625.1 TIGRFAM: trehalose synthase; KEGG: aau:AAur_4069 trehalose synthase YP_002489626.1 PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_2233 major facilitator family transporter YP_002489627.1 PFAM: regulatory protein TetR; KEGG: sgr:SGR_3387 TetR family transcriptional regulator YP_002489628.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sco:SCO7519 sugar acetyltransferase YP_002489629.1 PFAM: aldehyde dehydrogenase; KEGG: aau:AAur_4011 aldehyde dehydrogenase YP_002489630.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: rha:RHA1_ro02891 Na+/alanine symporter YP_002489631.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: rha:RHA1_ro02890 dihydrodipicolinate synthase YP_002489632.1 PFAM: amine oxidase; KEGG: rha:RHA1_ro02889 amine oxidase YP_002489633.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rha:RHA1_ro02597 GntR family transcriptional regulator YP_002489634.1 KEGG: aau:AAur_pTC20175 hypothetical protein YP_002489635.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: aau:AAur_3831 formyltetrahydrofolate deformylase YP_002489636.1 KEGG: art:Arth_3700 L-serine dehydratase; TIGRFAM: L-serine dehydratase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_002489637.1 PFAM: Sarcosine oxidase subunit gamma; KEGG: aau:AAur_3829 sarcosine oxidase subunit gamma YP_002489638.1 TIGRFAM: sarcosine oxidase subunit alpha family; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: art:Arth_3702 sarcosine oxidase subunit alpha family YP_002489639.1 TIGRFAM: sarcosine oxidase subunit delta family; PFAM: Sarcosine oxidase subunit delta heterotetrameric; KEGG: art:Arth_3703 sarcosine oxidase subunit delta family YP_002489640.1 TIGRFAM: sarcosine oxidase subunit beta family; PFAM: FAD dependent oxidoreductase; KEGG: aau:AAur_3826 sarcosine oxidase subunit beta YP_002489641.1 PFAM: Orn/Lys/Arg decarboxylase major region; glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: art:Arth_3705 glycine hydroxymethyltransferase YP_002489642.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: aau:AAur_3824 GntR family transcriptional regulator YP_002489643.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV_769 hypothetical protein YP_002489644.1 PFAM: ROK family protein; KEGG: art:Arth_3042 ROK family protein YP_002489645.1 PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_3014 extracellular solute-binding domain-containing protein YP_002489646.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_3013 ABC-type sugar transport system, permease YP_002489647.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_3012 ABC-type sugar transport system, permease YP_002489648.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: art:Arth_3038 alpha amylase, catalytic region YP_002489649.1 PFAM: ROK family protein; KEGG: art:Arth_1588 polyphosphate glucokinase YP_002489650.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: art:Arth_2030 alpha amylase, catalytic region YP_002489651.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: art:Arth_3518 prephenate dehydratase YP_002489652.1 catalyzes the formation of catechol from phenol YP_002489653.1 PFAM: fumarylacetoacetate hydrolase; dimethylmenaquinone methyltransferase; KEGG: aau:AAur_pTC20089 hypothetical protein YP_002489654.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: aau:AAur_pTC20090 GntR family transcriptional regulator YP_002489655.1 TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: aau:AAur_3915 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_002489656.1 KEGG: art:Arth_3523 3,4-dihydroxyphenylacetate 2,3-dioxygenase; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_002489657.1 KEGG: art:Arth_3524 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: fumarylacetoacetate hydrolase YP_002489658.1 PFAM: HpcH/HpaI aldolase; KEGG: aau:AAur_pTC20094 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (HpaI) YP_002489660.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: art:Arth_2857 pyruvate, water dikinase YP_002489661.1 PFAM: aldehyde dehydrogenase; KEGG: art:Arth_3511 aldehyde dehydrogenase (NAD(+)) YP_002489662.1 KEGG: art:Arth_3799 hypothetical protein YP_002489663.1 PFAM: regulatory protein MerR; KEGG: art:Arth_3805 MerR family transcriptional regulator YP_002489664.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: art:Arth_3806 chaperone DnaJ domain protein YP_002489665.1 PFAM: GrpE protein; KEGG: art:Arth_3807 GrpE protein YP_002489666.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002489667.1 catalyzes the formation of glutamate from glutamine YP_002489668.1 PFAM: regulatory protein ArsR; KEGG: msm:MSMEG_3372 ArsR family transcriptional regulator protein YP_002489669.1 PFAM: major facilitator superfamily MFS_1; KEGG: msm:MSMEG_3373 major facilitator superfamily protein MFS_1 YP_002489670.1 KEGG: art:Arth_3809 hypothetical protein YP_002489671.1 PFAM: regulatory protein TetR; KEGG: art:Arth_3810 TetR family transcriptional regulator YP_002489672.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: art:Arth_3811 NAD-dependent epimerase/dehydratase YP_002489673.1 PFAM: MMPL domain protein; KEGG: art:Arth_3812 MmpL domain protein YP_002489674.1 PFAM: regulatory protein MarR; KEGG: art:Arth_3813 MarR family transcriptional regulator YP_002489675.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_3815 methyltransferase type 11 YP_002489676.1 TIGRFAM: prevent-host-death family protein; KEGG: hha:Hhal_0788 prevent-host-death family protein YP_002489677.1 PFAM: PilT protein domain protein; KEGG: tth:TTC0113 hypothetical protein YP_002489678.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: art:Arth_3817 lysine exporter protein (LysE/YggA) YP_002489679.1 PFAM: protein-tyrosine phosphatase, low molecular weight; KEGG: art:Arth_3847 protein tyrosine phosphatase YP_002489680.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: anthranilate synthase component I domain protein; chorismate binding-like; KEGG: aau:AAur_3652 para-aminobenzoate synthase, component I YP_002489681.1 PFAM: phospholipase D/transphosphatidylase; KEGG: art:Arth_3849 cardiolipin synthetase 2 YP_002489682.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate YP_002489683.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: art:Arth_2138 hypothetical protein YP_002489684.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: art:Arth_3174 TetR family transcriptional regulator YP_002489685.1 KEGG: art:Arth_3175 hypothetical protein YP_002489686.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_3744 ribosomal-protein-alanine acetyltransferase YP_002489687.1 KEGG: art:Arth_3730 hypothetical protein YP_002489688.1 PFAM: domain of unknown function DUF1737; KEGG: art:Arth_3858 uncharacterized conserved small protein-like protein YP_002489689.1 SMART: rhodanese; KEGG: art:Arth_3859 rhodanese domain protein YP_002489690.1 KEGG: art:Arth_3860 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_002489691.1 ATP-dependent carboxylate-amine ligase YP_002489692.1 PFAM: helix-turn-helix domain protein; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: art:Arth_3863 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002489693.1 KEGG: art:Arth_3899 hypothetical protein YP_002489694.1 PFAM: cobalt transporter; KEGG: art:Arth_3864 cobalt transporter YP_002489695.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_3865 ABC transporter YP_002489696.1 KEGG: art:Arth_3866 ABC transporter permease YP_002489697.1 KEGG: aau:AAur_1240 hypothetical protein YP_002489698.1 KEGG: art:Arth_3867 hypothetical protein YP_002489699.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: art:Arth_3868 monovalent cation/proton antiporter, MnhG/PhaG subunit YP_002489700.1 KEGG: art:Arth_3869 hypothetical protein YP_002489701.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_002489702.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_002489703.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: art:Arth_3872 NADH-ubiquinone oxidoreductase, chain 4L YP_002489704.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_002489705.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3874 major facilitator superfamily MFS_1 YP_002489706.1 PFAM: TrkA-C domain protein; KEGG: art:Arth_3875 TrkA-C domain protein YP_002489707.1 PFAM: sodium/hydrogen exchanger; KEGG: art:Arth_3876 sodium/hydrogen exchanger YP_002489708.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_002489709.1 PFAM: FG-GAP repeat protein; SCP-like extracellular; KEGG: art:Arth_3878 allergen V5/TPX-1 family protein YP_002489710.1 KEGG: art:Arth_3879 hypothetical protein YP_002489711.1 KEGG: aau:AAur_3692 hypothetical protein YP_002489712.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: art:Arth_3880 alanine dehydrogenase/PNT domain protein YP_002489713.1 KEGG: aau:AAur_0981 metal-dependent amidase/aminoacylase/carboxypeptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002489714.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: art:Arth_3881 major facilitator superfamily MFS_1 YP_002489715.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_3882 LysR family transcriptional regulator YP_002489716.1 KEGG: art:Arth_3883 hypothetical protein YP_002489717.1 PFAM: Proline dehydrogenase; aldehyde dehydrogenase; KEGG: art:Arth_3884 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase YP_002489718.1 PFAM: Spore germination protein; amino acid permease-associated region; KEGG: art:Arth_3885 amino acid permease-associated region YP_002489719.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_3886 LysR family transcriptional regulator YP_002489720.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002489721.1 PFAM: hypothetical protein; KEGG: aau:AAur_3721 integral membrane permease YP_002489722.1 PFAM: FAD dependent oxidoreductase; KEGG: art:Arth_0077 sarcosine oxidase YP_002489723.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1959 major facilitator superfamily MFS_1 YP_002489724.1 PFAM: trehalose-phosphatase; glycoside hydrolase 15-related; KEGG: art:Arth_3889 glycoside hydrolase 15-related protein YP_002489725.1 PFAM: Luciferase-like monooxygenase; KEGG: art:Arth_3897 luciferase family protein YP_002489726.1 PFAM: aldo/keto reductase; KEGG: fre:Franean1_5322 aldo/keto reductase YP_002489727.1 PFAM: ThiJ/PfpI domain protein; KEGG: art:Arth_3900 ThiJ/PfpI domain protein YP_002489728.1 PFAM: extracellular solute-binding protein family 3; KEGG: aau:AAur_3724 ABC transporter solute binding protein YP_002489729.1 PFAM: regulatory protein TetR; KEGG: aau:AAur_0516 HTH-type transcriptional regulator BetI YP_002489730.1 PFAM: aldehyde dehydrogenase; KEGG: aau:AAur_0513 betaine aldehyde dehydrogenase YP_002489731.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: aau:AAur_0512 choline oxidase YP_002489732.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_3724 amino acid permease-associated region YP_002489733.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: aau:AAur_0490 Rieske family iron-sulfur cluster-binding protein YP_002489734.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: art:Arth_3715 oxidoreductase FAD-binding domain protein YP_002489735.1 TIGRFAM: formaldehyde dehydrogenase, glutathione-independent; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: aau:AAur_0480 glutathione-independent formaldehyde dehydrogenase YP_002489736.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: lch:Lcho_1217 short-chain dehydrogenase/reductase SDR YP_002489737.1 PFAM: xylose isomerase; KEGG: bja:blr3667 hypothetical protein YP_002489738.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: fra:Francci3_2803 general substrate transporter YP_002489739.1 KEGG: cgt:cgR_0209 hypothetical protein YP_002489740.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: mmw:Mmwyl1_0212 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase YP_002489741.1 PFAM: oxidoreductase; KEGG: bac:BamMC406_5800 oxidoreductase domain-containing protein YP_002489742.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sth:STH770 LacI family transcriptional repressor YP_002489743.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL4638 hypothetical protein YP_002489744.1 PFAM: xylose isomerase; KEGG: sco:SCO2754 hypothetical protein YP_002489745.1 PFAM: oxidoreductase; KEGG: eca:ECA2522 virulence factor YP_002489746.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_2003 short-chain dehydrogenase/reductase SDR YP_002489748.1 KEGG: aau:AAur_3729 monooxygenase YP_002489749.1 KEGG: aau:AAur_3730 monooxygenase YP_002489750.1 PFAM: protein of unknown function DUF1684; KEGG: aau:AAur_3731 protein of unknown function (DUF1684) YP_002489751.1 PFAM: Luciferase-like monooxygenase; KEGG: aau:AAur_3732 luciferase-like monooxygenase YP_002489752.1 PFAM: extracellular solute-binding protein family 3; KEGG: aau:AAur_3733 ABC transporter solute binding protein YP_002489753.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_3908 ABC transporter YP_002489754.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3909 polar amino acid ABC transporter inner membrane subunit YP_002489755.1 KEGG: art:Arth_3910 hypothetical protein YP_002489756.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_3737 acetyltransferase, GNAT family protein YP_002489757.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: art:Arth_3912 protein of unknown function DUF853, NPT hydrolase YP_002489758.1 KEGG: art:Arth_3913 hypothetical protein YP_002489759.1 KEGG: aau:AAur_3740 hypothetical protein YP_002489760.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; NHL repeat containing protein; KEGG: art:Arth_3914 NHL repeat containing protein YP_002489761.1 PFAM: copper resistance D domain protein; KEGG: art:Arth_3915 copper resistance D domain protein YP_002489762.1 PFAM: histone family protein DNA-binding protein; KEGG: aau:AAur_3743 DNA-binding protein HU YP_002489763.1 PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: art:Arth_3917 glycoside hydrolase family 2, TIM barrel YP_002489764.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: art:Arth_3918 transcriptional regulator, LacI family YP_002489765.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_002489766.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002489767.1 required for 70S ribosome assembly YP_002489768.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferric reductase domain protein transmembrane component domain; KEGG: art:Arth_3922 ferric reductase domain protein transmembrane component, N-terminal domain YP_002489769.1 PFAM: FMN-binding domain protein; KEGG: art:Arth_3923 FMN-binding domain protein YP_002489770.1 PFAM: ApbE family lipoprotein; KEGG: art:Arth_3924 ApbE-like lipoprotein YP_002489771.1 PFAM: lipolytic protein G-D-S-L family; KEGG: art:Arth_3925 lipolytic enzyme, G-D-S-L family YP_002489772.1 PFAM: regulatory protein MarR; KEGG: art:Arth_3927 MarR family transcriptional regulator YP_002489773.1 PFAM: lipolytic protein G-D-S-L family; KEGG: art:Arth_3930 lipolytic enzyme, G-D-S-L family YP_002489774.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: art:Arth_3931 siderophore-interacting protein YP_002489775.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_3763 enterobactin-iron transporter, ATP-binding protein YP_002489776.1 PFAM: transporter permease; KEGG: art:Arth_3933 transporter permease YP_002489777.1 PFAM: transporter permease; KEGG: art:Arth_3934 transporter permease YP_002489778.1 PFAM: periplasmic binding protein; KEGG: art:Arth_3935 periplasmic binding protein YP_002489779.1 KEGG: art:Arth_3938 hypothetical protein YP_002489780.1 KEGG: art:Arth_3939 hypothetical protein YP_002489781.1 KEGG: art:Arth_3940 ATP-binding protein YP_002489782.1 KEGG: art:Arth_3941 hypothetical protein YP_002489783.1 KEGG: art:Arth_3942 hypothetical protein YP_002489784.1 KEGG: art:Arth_3943 hypothetical protein YP_002489785.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: art:Arth_3944 acyl-CoA dehydrogenase domain protein YP_002489786.1 KEGG: art:Arth_3945 hypothetical protein YP_002489787.1 KEGG: art:Arth_3946 hypothetical protein YP_002489788.1 KEGG: art:Arth_3947 hypothetical protein YP_002489789.1 PFAM: aldo/keto reductase; KEGG: art:Arth_3949 aldo/keto reductase YP_002489790.1 PFAM: NmrA family protein; KEGG: art:Arth_3950 NmrA family protein YP_002489791.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: art:Arth_3951 nitrate reductase (NADH) YP_002489792.1 PFAM: RNA-binding S4 domain protein; KEGG: art:Arth_3582 RNA-binding S4 domain protein YP_002489793.1 PFAM: amidohydrolase; KEGG: art:Arth_3965 amidohydrolase 3 YP_002489794.1 KEGG: art:Arth_3966 hypothetical protein YP_002489795.1 KEGG: art:Arth_3971 hypothetical protein YP_002489796.1 KEGG: art:Arth_0438 hypothetical protein YP_002489797.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: art:Arth_3972 HipA domain protein YP_002489798.1 TIGRFAM: transcriptional regulator, y4mF family; PFAM: helix-turn-helix domain protein; KEGG: art:Arth_3973 transcriptional regulator, XRE family YP_002489799.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_3974 GntR family transcriptional regulator YP_002489800.1 PFAM: L-asparaginase II; KEGG: art:Arth_3975 L-asparaginase II YP_002489801.1 PFAM: fumarate lyase; KEGG: art:Arth_3544 fumarate lyase YP_002489802.1 PFAM: amino acid permease-associated region; KEGG: art:Arth_3549 amino acid permease-associated region YP_002489803.1 KEGG: art:Arth_2007 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_002489804.1 PFAM: GCN5-related N-acetyltransferase; ATPase AAA central domain protein; SMART: ATPase AAA; KEGG: art:Arth_3981 ATPase AAA, central domain protein YP_002489805.1 PFAM: low temperature requirement A; KEGG: art:Arth_3982 low temperature requirement A YP_002489806.1 KEGG: aau:AAur_1735 hypothetical protein YP_002489807.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: art:Arth_3985 glutamate--tRNA ligase YP_002489808.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_3986 AsnC family transcriptional regulator YP_002489809.1 KEGG: art:Arth_3987 hypothetical protein YP_002489810.1 KEGG: art:Arth_3988 hypothetical protein YP_002489811.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_3989 AsnC family transcriptional regulator YP_002489812.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: art:Arth_3990 lysine exporter protein (LysE/YggA) YP_002489813.1 KEGG: art:Arth_3992 hypothetical protein YP_002489814.1 KEGG: art:Arth_3991 hypothetical protein YP_002489815.1 PFAM: protein of unknown function DUF456; KEGG: art:Arth_3993 hypothetical protein YP_002489816.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: art:Arth_3994 malate dehydrogenase (oxaloacetate-decarboxylating) YP_002489817.1 PFAM: regulatory protein TetR; KEGG: art:Arth_3995 TetR family transcriptional regulator YP_002489818.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3996 major facilitator superfamily MFS_1 YP_002489819.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_002489820.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3998 drug resistance transporter EmrB/QacA subfamily YP_002489821.1 KEGG: art:Arth_3999 sugar transporter; TIGRFAM: sugar transporter; PFAM: general substrate transporter; major facilitator superfamily MFS_1 YP_002489822.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_4158 ABC transporter ATP-binding protein YP_002489823.1 KEGG: aau:AAur_4159 integral membrane protein YP_002489824.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_4000 major facilitator superfamily MFS_1 YP_002489825.1 PFAM: regulatory protein MarR; KEGG: art:Arth_4001 MarR family transcriptional regulator YP_002489826.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_4002 GCN5-related N-acetyltransferase YP_002489827.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_3854 iron ABC transporter ATP-binding protein YP_002489828.1 PFAM: transporter permease; KEGG: aau:AAur_3855 ABC-type Fe3+-siderophores transporter, permease component YP_002489829.1 PFAM: transporter permease; KEGG: aau:AAur_3856 iron(III) ABC transporter permease YP_002489830.1 PFAM: periplasmic binding protein; KEGG: aau:AAur_3857 iron ABC transporter periplasmic binding protein YP_002489831.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: art:Arth_4003 mannitol-1-phosphate 5-dehydrogenase YP_002489832.1 TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIsubunit beta; KEGG: aau:AAur_3859 PTS system, mannitol-specific IIABC component YP_002489833.1 PFAM: regulatory protein TetR; KEGG: art:Arth_4005 TetR family transcriptional regulator YP_002489834.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: art:Arth_4006 phosphoenolpyruvate--protein phosphotransferase YP_002489835.1 KEGG: art:Arth_0404 levanase; PFAM: glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32 YP_002489836.1 PFAM: glycosyl hydrolase family 32; SMART: glycoside hydrolase family 32; KEGG: aau:AAur_1958 glycoside hydrolase family protein YP_002489837.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: aau:AAur_1957 ABC-type oligopeptide transporter, ATPase component YP_002489838.1 KEGG: aau:AAur_1956 oligopeptide/dipeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002489839.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_1954 ABC-type dipeptide/oligopeptide transporter, permease YP_002489840.1 PFAM: extracellular solute-binding protein family 5; KEGG: aau:AAur_1953 ABC-type dipeptide transporter YP_002489841.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: aau:AAur_1952 ribose operon transcriptional regulator YP_002489842.1 TIGRFAM: excisionase; PFAM: regulatory protein MerR; KEGG: aau:AAur_3863 excisionase family protein YP_002489843.1 PFAM: alpha/beta hydrolase fold; KEGG: aau:AAur_3865 alpha/beta fold family hydrolase YP_002489844.1 KEGG: art:Arth_4011 transcriptional regulator YP_002489845.1 KEGG: aau:AAur_3870 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein YP_002489846.1 PFAM: semialdehyde dehydrogenase NAD - binding; oxidoreductase; oxidoreductase domain; KEGG: art:Arth_4013 oxidoreductase YP_002489847.1 PFAM: extracellular solute-binding protein family 5; KEGG: art:Arth_4014 extracellular solute-binding protein, family 5 YP_002489848.1 KEGG: art:Arth_4015 oligopeptide/dipeptide ABC transporter ATPase; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002489849.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_4016 binding-protein-dependent transport systems inner membrane component YP_002489850.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_4017 binding-protein-dependent transport systems inner membrane component YP_002489851.1 PFAM: regulatory protein TetR; KEGG: art:Arth_4018 TetR family transcriptional regulator YP_002489852.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: art:Arth_4019 NADPH-dependent FMN reductase YP_002489853.1 KEGG: aau:AAur_3881 lipoprotein YP_002489854.1 PFAM: aminotransferase class I and II; KEGG: art:Arth_4022 aminotransferase, class I and II YP_002489855.1 PFAM: UspA domain protein; KEGG: art:Arth_4023 UspA domain protein YP_002489856.1 KEGG: art:Arth_4025 hypothetical protein YP_002489857.1 KEGG: aau:AAur_3890 PAP2 superfamily domain-containing protein YP_002489858.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: art:Arth_4026 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_002489859.1 PFAM: transketolase; transketolase domain protein; KEGG: art:Arth_4027 transketolase, central region YP_002489860.1 KEGG: art:Arth_4028 pyruvate dehydrogenase (acetyl-transferring); TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component YP_002489861.1 PFAM: aminotransferase class I and II; KEGG: art:Arth_4029 aminotransferase YP_002489862.1 PFAM: pectinesterase; lipolytic protein G-D-S-L family; KEGG: bvu:BVU_1815 carbohydrate esterase family 8 protein YP_002489863.1 PFAM: Pectate lyase/Amb allergen; KEGG: sgr:SGR_216 secreted pectate lyase YP_002489864.1 PFAM: membrane protein of unknown function; KEGG: aau:AAur_3895 hypothetical protein YP_002489865.1 KEGG: art:Arth_3899 hypothetical protein YP_002489866.1 KEGG: art:Arth_4031 hypothetical protein YP_002489867.1 KEGG: art:Arth_4032 hypothetical protein YP_002489868.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002489869.1 PFAM: phosphoglycerate mutase; KEGG: art:Arth_4034 phosphoglycerate mutase YP_002489870.1 PFAM: tyrosine protein kinase; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: art:Arth_4035 serine/threonine protein kinase YP_002489872.1 PFAM: regulatory protein MarR; KEGG: art:Arth_4036 MarR family transcriptional regulator YP_002489873.1 PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_4037 GCN5-related N-acetyltransferase YP_002489874.1 PFAM: thioesterase superfamily protein; KEGG: art:Arth_4038 thioesterase superfamily protein YP_002489875.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_4039 extracellular solute-binding protein, family 1 YP_002489876.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: art:Arth_4040 ABC transporter YP_002489877.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_4041 binding-protein-dependent transport systems inner membrane component YP_002489878.1 PFAM: monooxygenase FAD-binding; KEGG: aau:AAur_2312 monooxygenase family protein YP_002489879.1 PFAM: regulatory protein TetR; KEGG: sco:SCO1339 hypothetical protein YP_002489880.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_002489881.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_4044 IclR family transcripitonal regulator YP_002489882.1 KEGG: art:Arth_4048 hypothetical protein YP_002489883.1 PFAM: amino acid-binding ACT domain protein; KEGG: art:Arth_4062 amino acid-binding ACT domain protein YP_002489884.1 PFAM: diacylglycerol kinase; KEGG: art:Arth_4068 diacylglycerol kinase, catalytic region YP_002489885.1 PFAM: NAD(P) transhydrogenase subunit beta; KEGG: art:Arth_4084 NAD(P) transhydrogenase subunit beta YP_002489886.1 KEGG: art:Arth_4085 NAD(P) transhydrogenase subunit alpha YP_002489887.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: art:Arth_4086 alanine dehydrogenase/PNT domain protein YP_002489888.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_4070 IclR family transcripitonal regulator YP_002489889.1 KEGG: aau:AAur_4037 3-oxoadipate CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase subunit beta; PFAM: coenzyme A transferase YP_002489890.1 KEGG: art:Arth_4072 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase subunit alpha; PFAM: coenzyme A transferase YP_002489891.1 KEGG: aau:AAur_4039 beta-ketoadipyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_002489892.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: carboxymuconolactone decarboxylase; KEGG: art:Arth_4074 4-carboxymuconolactone decarboxylase YP_002489893.1 PFAM: alpha/beta hydrolase fold; KEGG: art:Arth_4075 alpha/beta hydrolase fold YP_002489894.1 PFAM: fumarate lyase; KEGG: art:Arth_4076 3-carboxy-cis,cis-muconate cycloisomerase YP_002489895.1 TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: art:Arth_4077 protocatechuate 3,4-dioxygenase, subunit alpha YP_002489896.1 KEGG: art:Arth_4078 protocatechuate 3,4-dioxygenase, beta subunit; TIGRFAM: protocatechuate 3,4-dioxygenase subunit beta; PFAM: intradiol ring-cleavage dioxygenase YP_002489897.1 PFAM: xylose isomerase; KEGG: aau:AAur_4045 4-hydroxyphenylpyruvate dioxygenase YP_002489898.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002489899.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: art:Arth_4081 IclR family transcripitonal regulator YP_002489900.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_4082 major facilitator superfamily MFS_1 YP_002489901.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth YP_002489902.1 PFAM: hypothetical protein; KEGG: cmi:CMM_0461 permease AEC family YP_002489903.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rsa:RSal33209_1500 acetyltransferase YP_002489904.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_002489905.1 KEGG: art:Arth_2158 hypothetical protein YP_002489906.1 KEGG: art:Arth_4089 hypothetical protein YP_002489907.1 PFAM: thiamineS protein; KEGG: art:Arth_4090 thiamineS protein YP_002489908.1 KEGG: art:Arth_4091 hypothetical protein YP_002489909.1 KEGG: art:Arth_4092 hypothetical protein YP_002489910.1 KEGG: bam:Bamb_2578 hypothetical protein YP_002489911.1 PFAM: peptidase C60 sortase A and B; KEGG: art:Arth_2531 hypothetical protein YP_002489912.1 PFAM: UspA domain protein; KEGG: art:Arth_4094 UspA domain protein YP_002489913.1 PFAM: protein of unknown function DUF156; KEGG: aau:AAur_4093 hypothetical protein YP_002489914.1 PFAM: Heavy metal transport/detoxification protein; KEGG: art:Arth_4098 heavy metal transport/detoxification protein YP_002489915.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: art:Arth_4099 ATPase P YP_002489916.1 KEGG: art:Arth_4100 hypothetical protein YP_002489917.1 KEGG: art:Arth_4101 hypothetical protein YP_002489918.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: art:Arth_4102 protein of unknown function DUF6, transmembrane YP_002489919.1 PFAM: protein of unknown function DUF1470; KEGG: art:Arth_4103 protein of unknown function DUF1470 YP_002489920.1 KEGG: art:Arth_4104 hypothetical protein YP_002489921.1 KEGG: art:Arth_4105 hypothetical protein YP_002489922.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: aau:AAur_4102 MATE efflux family protein YP_002489923.1 PFAM: DoxX family protein; KEGG: art:Arth_4107 DoxX family protein YP_002489924.1 PFAM: thioesterase superfamily protein; KEGG: art:Arth_4109 thioesterase superfamily protein YP_002489925.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; KEGG: art:Arth_4110 primary replicative DNA helicase YP_002489926.1 KEGG: art:Arth_4113 hypothetical protein YP_002489927.1 PFAM: NADPH-dependent FMN reductase; KEGG: aau:AAur_4144 NADH-dependent FMN reductase YP_002489928.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: aau:AAur_4160 PhzF family phenazine biosynthesis protein YP_002489929.1 PFAM: Domain of unknown function DUF1801; KEGG: aau:AAur_4161 hypothetical protein YP_002489930.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002489931.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002489932.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: art:Arth_4119 single-strand binding protein YP_002489933.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002489934.1 PFAM: Spore germination protein; amino acid permease-associated region; KEGG: art:Arth_4133 amino acid permease-associated region YP_002489935.1 PFAM: regulatory protein LuxR; KEGG: nfa:nfa18100 transcriptional regulator YP_002489936.1 KEGG: aau:AAur_2149 glucosyltransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_002489937.1 PFAM: semialdehyde dehydrogenase NAD - binding; oxidoreductase; oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: aau:AAur_2150 oxidoreductase family protein YP_002489938.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: art:Arth_4059 NAD-dependent epimerase/dehydratase YP_002489939.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: art:Arth_4058 DegT/DnrJ/EryC1/StrS aminotransferase YP_002489940.1 KEGG: aau:AAur_2153 acetyltransferase protein YP_002489941.1 PFAM: glycosyl transferase group 1; KEGG: aau:AAur_2154 glycosyl transferase group 1 family protein YP_002489942.1 PFAM: polysaccharide biosynthesis protein; KEGG: aau:AAur_2155 glycosyl transferase/polysaccharide biosynthesis domain-containing protein YP_002489943.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: art:Arth_4056 DegT/DnrJ/EryC1/StrS aminotransferase YP_002489944.1 PFAM: glycosyl transferase family 2; KEGG: aau:AAur_2155 glycosyl transferase/polysaccharide biosynthesis domain-containing protein YP_002489945.1 KEGG: aau:AAur_2157 hypothetical protein YP_002489946.1 PFAM: O-antigen polymerase; KEGG: aau:AAur_2158 O-antigen polymerase family protein YP_002489947.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: aau:AAur_2159 chain length determinant domain-containing protein YP_002489948.1 KEGG: aau:AAur_2161 hypothetical protein YP_002489949.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase family 2; glycosyl transferase WecB/TagA/CpsF; KEGG: art:Arth_4051 glycosyl transferase, WecB/TagA/CpsF family YP_002489950.1 KEGG: ace:Acel_1933 hypothetical protein YP_002489951.1 catalyzes the removal of amino acids from the N termini of peptides YP_002489952.1 PFAM: intradiol ring-cleavage dioxygenase; KEGG: art:Arth_4129 intradiol ring-cleavage dioxygenase YP_002489953.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: art:Arth_4134 two component LuxR family transcriptional regulator YP_002489954.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: art:Arth_4135 signal transduction histidine kinase YP_002489955.1 KEGG: art:Arth_4136 ABC transporter transmembrane protein YP_002489956.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_4175 ABC transporter ATP-binding protein YP_002489957.1 PFAM: phosphoesterase PA-phosphatase related; diacylglycerol kinase; KEGG: art:Arth_4138 phosphoesterase, PA-phosphatase related YP_002489958.1 PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_4139 major facilitator superfamily MFS_1 YP_002489959.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_4144 ABC transporter YP_002489960.1 PFAM: penicillin-binding protein transpeptidase; KEGG: art:Arth_4146 penicillin-binding protein, transpeptidase YP_002489961.1 KEGG: art:Arth_4153 dehydrogenase YP_002489962.1 KEGG: art:Arth_4154 transmembrane protein YP_002489964.1 PFAM: phosphoglycerate mutase; KEGG: aau:AAur_4193 phosphoglycerate mutase family protein YP_002489965.1 KEGG: art:Arth_4157 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; tRNA adenylyltransferase; PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002489966.1 PFAM: NUDIX hydrolase; KEGG: aau:AAur_4195 MutT/NUDIX family protein YP_002489967.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: art:Arth_4159 integral membrane protein MviN YP_002489968.1 KEGG: art:Arth_4160 hypothetical protein YP_002489969.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: art:Arth_4161 thioredoxin reductase YP_002489970.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: art:Arth_4162 thioredoxin YP_002489971.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: art:Arth_4165 chromosome segregation DNA-binding protein YP_002489972.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: aau:AAur_4204 ParA-family protein YP_002489973.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002489974.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: art:Arth_4168 single-stranded nucleic acid binding R3H domain protein YP_002489975.1 PFAM: hypothetical protein; KEGG: art:Arth_4169 hypothetical protein YP_002489976.1 PFAM: protein of unknown function DUF37; KEGG: aau:AAur_4208 hypothetical protein YP_002489977.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: art:Arth_4171 ribonuclease P protein component