-- dump date 20240505_235717 -- class Genbank::Contig -- table contig_comment -- id comment NC_015320.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002588.1.REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depthREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, MarineREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: ChemolithoautotrophREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth;REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge"REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: HyperthermophileREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75CREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: BarophileREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 2 Pseudo Genes (total) :: 5REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 2 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 2 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 2 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 3 of 5REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 2 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 3 of 5 Pseudo Genes (incomplete) :: 1 of 5REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 2 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 3 of 5 Pseudo Genes (incomplete) :: 1 of 5 Pseudo Genes (internal stop) :: 1 of 5REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 2 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 3 of 5 Pseudo Genes (incomplete) :: 1 of 5 Pseudo Genes (internal stop) :: 1 of 5 CRISPR Arrays :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 2 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 3 of 5 Pseudo Genes (incomplete) :: 1 of 5 Pseudo Genes (internal stop) :: 1 of 5 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002588.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089485 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Archaeoglobus veneficus SNP6, DSM 11195 collection_date :: Missing lat_lon :: Missing depth :: 3500m depth alt_elev :: Missing country :: Missing environment :: Deep sea, Marine num_replicons :: 1 ref_biomaterial :: DSM 11195 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02910 Type Strain :: Yes Greengenes ID :: 740 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: "Black smoker wall, 3500m depth; Mid-Atlantic Ridge" Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 75C Gram Staining :: Gram- Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/15/2024 02:05:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,181 CDSs (total) :: 2,130 Genes (coding) :: 2,125 CDSs (with protein) :: 2,125 Genes (RNA) :: 51 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 2 Pseudo Genes (total) :: 5 CDSs (without protein) :: 5 Pseudo Genes (ambiguous residues) :: 0 of 5 Pseudo Genes (frameshifted) :: 3 of 5 Pseudo Genes (incomplete) :: 1 of 5 Pseudo Genes (internal stop) :: 1 of 5 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## COMPLETENESS: full length.