-- dump date 20140618_204533 -- class Genbank::CDS -- table cds_note -- id note YP_003696388.1 COGs: COG0593 ATPase involved in DNA replication initiation; InterProIPR003593:IPR013159:IPR013317:IPR001957:IPR 010921:IPR020591:IPR018312; KEGG: ace:Acel_0001 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; replication initiation factor DnaA; SMART: Chromosomal replication initiator DnaA domain; ATPase AAA; SPTR: D0WL10 Bacterial DnaA protein helix-turn-helix protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_003696389.1 COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: jde:Jden_0002 DNA polymerase III beta subunit; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: D0WL07 DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III subunit beta; PFAM: DNA polymerase III subunit beta, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III subunit beta, central domain; TIGRFAM: DNA polymerase III subunit beta YP_003696390.1 COGs: COG1195 recombinational DNA repair ATPase (RecF pathway); InterPro IPR003395:IPR001238:IPR018078; KEGG: bcv:Bcav_0004 DNA replication and repair protein RecF; PFAM: SMC domain protein; SPTR: D0WL06 DNA replication and repair protein RecF; TIGRFAM: DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein YP_003696391.1 COGs: COG5512 Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives; InterPro IPR007922; KEGG: bcv:Bcav_0005 protein of unknown function DUF721; PFAM: protein of unknown function DUF721; SPTR: D0WL05 protein in RecF-GyrB intergenic region; PFAM: protein of unknown function (DUF721) YP_003696392.1 COGs: COG0187 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR001241:IPR013506:IPR006171:IPR 002288:IPR013759:IPR011557:IPR013760:IPR020568:IPR000565:I PR018522; KEGG: jde:Jden_0005 DNA gyrase subunit beta; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: D0WL04 DNA gyrase subunit beta; TIGRFAM: DNA gyrase B subunit; PFAM: Toprim domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase subunit beta, carboxyl terminus; TIGRFAM: DNA gyrase subunit beta YP_003696393.1 COGs: COG0188 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterProIPR002205:IPR006691:IPR013758:IPR013757:IPR 005743:IPR013760; KEGG: bcv:Bcav_0007 DNA gyrase subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: D0WL03 DNA gyrase subunit alpha; TIGRFAM: DNA gyrase A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase subunit alpha YP_003696394.1 KEGG: kra:Krad_0008 hypothetical protein; SPTR: D0WL02 integral membrane protein; PFAM: transmembrane domain of unknown function (DUF3566) YP_003696395.1 KEGG: bcv:Bcav_0009 hypothetical protein; SPTR: C5BUQ1 uncharacterized protein YP_003696396.1 COGs: COG2865 transcriptional regulator; InterPro IPR007421; KEGG: cef:CE2684 hypothetical protein; PFAM: AAA-4 family protein; SPTR: C0VWZ2 transcriptional regulator; PFAM: Divergent AAA domain YP_003696397.1 COGs: COG1196 chromosome segregation ATPase; InterPro IPR000421:IPR008979; KEGG: cai:Caci_5658 ricin B lectin; PFAM: coagulation factor 5/8 type domain protein; SPTR: C7QC69 ricin B lectin; PFAM: F5/8 type C domain YP_003696398.1 COGs: COG1368 phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917:IPR017849:IPR017850; KEGG: sca:Sca_2153 hypothetical protein; PFAM: sulfatase; SPTR: B9DJW2 uncharacterized protein; PFAM: Sulfatase YP_003696399.1 InterPro IPR002575:IPR011009; KEGG: blj:BLD_1766 homoserine kinase type II; PFAM: aminoglycoside phosphotransferase; SPTR: A7BJ81 N-acetylhexosamine kinase; PFAM: phosphotransferase enzyme family YP_003696400.1 InterPro IPR012711; KEGG: blj:BLD_1765 Lacto-N-biose phosphorylase; PFAM: conserved hypothetical protein; SPTR: B3DQH2 Lacto-N-biose phosphorylase; PFAM: Lacto-N-biose phosphorylase; TIGRFAM: conserved hypothetical protein TIGR02336 YP_003696401.1 COGs: COG1940 transcriptional regulator/sugar kinase; InterPro IPR001367:IPR000600; KEGG: stp:Strop_4335 ROK family protein; PFAM: ROK family protein; iron dependent repressor; SPTR: C0W0N6 transcriptional regulator; PFAM: ROK family; IclR helix-turn-helix domain YP_003696402.1 COGs: COG0786 Na+/glutamate symporter; InterPro IPR004445; KEGG: lba:Lebu_0654 sodium/glutamate symporter; PFAM: sodium/glutamate symporter; SPTR: C2CRY4 ESS family glutamate:Na+ symporter; PFAM: Sodium/glutamate symporter; TIGRFAM: sodium--glutamate symport carrier (gltS) YP_003696403.1 InterPro IPR016181; KEGG: cai:Caci_8064 GCN5-related N-acetyltransferase; SPTR: C0UD33 acetyltransferase (GNAT) family protein YP_003696404.1 InterPro IPR001647:IPR012287:IPR009057; KEGG: jde:Jden_0686 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C0W4B6 transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_003696405.1 COGs: COG1511 membrane protein; InterPro IPR017500:IPR017501; KEGG: jde:Jden_0687 YhgE/Pip C-terminal domain protein; SPTR: C0W4B7 Phage infection protein; TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; TIGRFAM: X-X-X-Leu-X-X-Gly heptad repeats; YhgE/Pip C-terminal domain; YhgE/Pip N-terminal domain YP_003696406.1 COGs: COG1620 L-lactate permease; InterPro IPR003804; KEGG: cdi:DIP1033 L-lactate permease; PFAM: L-lactate permease; SPTR: A7BE61 uncharacterized protein; PFAM: L-lactate permease; TIGRFAM: L-lactate transport YP_003696407.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: xce:Xcel_0891 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C0W209 (S)-2-hydroxy-acid oxidase; PFAM: Cysteine-rich domain YP_003696408.1 COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterProIPR003741:IPR012285:IPR004452:IPR009051:IPR 017900; KEGG: nml:Namu_1033 iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; SPTR: D0WLY3 Iron-sulfur cluster-binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: Domain of unknown function (DUF3390); Uncharacterised ACR, YkgG family COG1556; TIGRFAM: 2[4Fe-4S] protein YP_003696409.1 COGs: COG1556 conserved hypothetical protein; InterPro IPR003741; KEGG: nml:Namu_5228 protein of unknown function DUF162; PFAM: protein of unknown function DUF162; SPTR: A7BE65 uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556 YP_003696410.1 InterPro IPR008454:IPR019931; KEGG: car:cauri_0187 surface-anchored fimbrial subunit; PFAM: Cna B domain protein; SPTR: A7BA22 uncharacterized protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna protein B-type domain; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696411.1 InterPro IPR001899:IPR019931; KEGG: cur:cur_1898 surface-anchored protein (fimbrial subunit); SPTR: C2BJ18 fimbrial subunit; TIGRFAM: LPXTG-motif cell wall anchor domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696412.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR008334:IPR006179; KEGG: mxa:MXAN_5361 5'-nucleotidase; PFAM: 5'-nucleotidase domain protein; SPTR: A8TK86 5'-nucleotidase; PFAM: 5'-nucleotidase, C-terminal domain YP_003696413.1 COGs: COG4409 Neuraminidase (sialidase); InterPro IPR011040; KEGG: pac:PPA1560 sialidase precursor; PRIAM: Exo-alpha-sialidase; SPTR: Q44562 Sialidase; PFAM: BNR/Asp-box repeat YP_003696414.1 COGs: COG1292 Choline-glycine betaine transporter; InterPro IPR000060:IPR018093; KEGG: cgt:cgR_1005 hypothetical protein; PFAM: BCCT transporter; SPTR: C8NW06 BCCT family osmoprotectant transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT family transporter; TIGRFAM: choline/carnitine/betaine transport YP_003696415.1 COGs: COG2962 permease; InterPro IPR000620:IPR004626; KEGG: pfl:PFL_3385 RarD protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C0W1I2 DMT superfamily drug/metabolite transporter; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: EamA-like transporter family; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); rarD protein YP_003696416.1 KEGG: car:cauri_0187 surface-anchored fimbrial subunit; SPTR: C1RFM0 uncharacterized protein YP_003696417.1 InterPro IPR008454:IPR019948:IPR001899:IPR019931; KEGG: cdi:DIP0235 fimbrial subunit; PFAM: Gram-positive anchor; Cna B domain protein; SPTR: Q1G4W1 type-2 fimbrial major subunit; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Gram positive anchor; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696418.1 COGs: COG3764 Sortase (surface protein transpeptidase); InterPro IPR005754; KEGG: cdi:DIP2225 fimbrial associated sortase-like protein; PFAM: peptidase C60 sortase A and B; SPTR: C2CUX9 Sortase (Surface protein transpeptidase); TIGRFAM: sortase family protein; PFAM: Sortase family; TIGRFAM: LPXTG-site transpeptidase (sortase) family protein YP_003696419.1 InterPro IPR013781:IPR017853; KEGG: bfa:Bfae_10930 hypothetical protein; SPTR: C7MBG8 uncharacterized protein YP_003696420.1 COGs: COG0383 alpha-mannosidase; InterPro IPR000602:IPR015341:IPR011682:IPR011330; KEGG: pac:PPA1459 alpha-mannosidase; PFAM: glycoside hydrolase family 38; glycoside hydrolase family 38 central region; glycosyl hydrolase 38 domain protein; SPTR: Q6A7Q8 alpha-mannosidase; PFAM: glycosyl hydrolases family 38 C-terminal domain; glycosyl hydrolases family 38 N-terminal domain; alpha mannosidase, middle domain YP_003696421.1 COGs: COG1609 transcriptional regulators; InterPro IPR000843:IPR001761:IPR010982; KEGG: pac:PPA1457 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; SPTR: Q6A7R0 LacI family transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family YP_003696422.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611:IPR002173; KEGG: bcv:Bcav_1099 fructokinase; PFAM: PfkB domain protein; SPTR: C1RNV6 Sugar kinase, ribokinase; PFAM: pfkB family carbohydrate kinase YP_003696423.1 COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819:IPR012341:IPR008928; KEGG: bcv:Bcav_0388 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: C0W0U9 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) YP_003696424.1 COGs: COG1062 Zn-dependent alcohol dehydrogenase class III; InterPro IPR013154:IPR013149:IPR011032:IPR016040; KEGG: hypothetical protein; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES; SPTR: D0YPM1 alcohol dehydrogenase; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_003696425.1 InterPro IPR005828:IPR003663:IPR016196:IPR005829; KEGG: pac:PPA0467 sugar transporter YfiG; PFAM: general substrate transporter; SPTR: C0W6M7 MFS family major facilitator transporter; TIGRFAM: sugar transporter; PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter sugar porter (SP) family YP_003696426.1 KEGG: cpy:Cphy_0503 hypothetical protein; SPTR: Q0CAY2 uncharacterized protein YP_003696427.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR013022; KEGG: pac:PPA0468 myo-inositol catabolism protein; PFAM: Xylose isomerase domain protein TIM barrel; PRIAM: myo-inosose-2 dehydratase; SPTR: D0YPM5 Sugar phosphate isomerase/epimerase IolE; PFAM: Xylose isomerase-like TIM barrel YP_003696428.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104:IPR016040; KEGG: pac:PPA0469 myo-inositol 2-dehydrogenase; PFAM: oxidoreductase; oxidoreductase domain; SPTR: C0W6K5 inositol 2-dehydrogenase; PFAM: oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase family, C-terminal alpha/beta domain YP_003696429.1 COGs: COG0176 transaldolase; InterPro IPR001585:IPR013785; KEGG: pac:PPA0454 transaldolase; PFAM: transaldolase; SPTR: Q6AAL0 transaldolase; PFAM: transaldolase YP_003696430.1 COGs: COG2188 transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: msm:MSMEG_4659 GntR-family protein transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C2KTD8 transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_003696431.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611:IPR002139; KEGG: rer:RER_20210 5-dehydro-2-deoxygluconokinase; PFAM: PfkB domain protein; SPTR: C0W6K8 Possible 5-dehydro-2-deoxygluconokinase; PFAM: pfkB family carbohydrate kinase YP_003696432.1 KEGG: sro:Sros_5538 hypothetical protein; SPTR: D0YPL4 deoxyribose-phosphate aldolase superfamily protein YP_003696433.1 COGs: COG3718 Uncharacterized protein involved in inositol metabolism; InterPro IPR010669:IPR011051; KEGG: rop:ROP_10680 5-deoxy-glucuronate isomerase; PFAM: myo-inositol catabolism IolB domain protein; SPTR: D0YPL3 5-deoxy-glucuronate isomerase; PFAM: KduI/IolB family YP_003696434.1 COGs: COG3962 acetolactate synthase; InterPro IPR012001:IPR012000:IPR011766; KEGG: pac:PPA0459 thiamine pyrophosphate-requiring enzyme, acetolactate synthase; PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; SPTR: D0YPL2 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; PFAM: thiamine pyrophosphate enzyme, central domain; thiamine pyrophosphate enzyme, N-terminal TPP binding domain; thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_003696435.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590:IPR016162:IPR010061:IPR016161; KEGG: pac:PPA0461 methylmalonic acid semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; SPTR: C0W6L2 methylmalonate-semialdehyde dehydrogenase (acylating); TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase family; TIGRFAM: methylmalonic acid semialdehyde dehydrogenase YP_003696436.1 COGs: COG5476 conserved hypothetical protein; InterPro IPR015995:IPR010799:IPR009197; KEGG: pac:PPA2061 hypothetical protein; PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; SPTR: Q6A639 Conserved protein; PFAM: MlrC C-terminus; protein of unknown function (DUF1485) YP_003696437.1 COGs: COG1940 transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: pac:PPA2062 ROK family transcriptional regulator; PFAM: ROK family protein; SPTR: Q6A638 transcriptional regulator, ROK family; PFAM: ROK family; IclR helix-turn-helix domain YP_003696438.1 COGs: COG0747 ABC-type dipeptide transporter periplasmic component; InterPro IPR000914; KEGG: pac:PPA2063 peptide-binding transporter; PFAM: extracellular solute-binding protein family 5; SPTR: C0W0N7 peptide-binding transporter; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003696439.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transporters permeases; InterPro IPR000515; KEGG: pac:PPA2064 dipeptide transporter permease DppB; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: Q6A636 Dipeptide transporter permease DppB; PFAM: Binding-protein-dependent transporter inner membrane component YP_003696440.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transporters permeases; InterPro IPR000515; KEGG: pac:PPA2065 dipeptide transporter permease DppC; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: Q6A635 Dipeptide transporter permease DppC; PFAM: Binding-protein-dependent transporter inner membrane component YP_003696441.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transporter ATPase component; InterProIPR003593:IPR003439:IPR013563:IPR010066:IPR 017871; KEGG: pac:PPA2066 ATP-binding protein of dipeptide ABC transporter; PFAM: ABC transporter related; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; SPTR: Q6A634 ATP-binding protein of dipeptide ABC transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide transporter C-terminal region; TIGRFAM: phosphonate C-P lyase system protein PhnK; oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal domain YP_003696442.1 COGs: COG1940 transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: pac:PPA2359 transcriptional repressor protein; PFAM: ROK family protein; SPTR: Q6A633 transcriptional repressor protein; PFAM: ROK family YP_003696443.1 COGs: COG3669 alpha-L-fucosidase; InterPro IPR000933:IPR013781:IPR016286:IPR017853; KEGG: pac:PPA2070 alpha-L-fucosidase precursor; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); PRIAM: alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); SPTR: Q6A632 alpha-L-fucosidase; PFAM: alpha-L-fucosidase YP_003696444.1 COGs: COG3142 Uncharacterized protein involved in copper resistance; InterPro IPR005627; KEGG: sma:SAV_3917 homeostasis protein; PFAM: CutC family protein; SPTR: Q82GI0 homeostasis protein; PFAM: CutC family YP_003696445.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: sen:SACE_6472 dTDP-rhamnosyl transferase; PFAM: glycosyl transferase family 2; SPTR: C0W8B3 dTDP-rhamnosyl transferase; PFAM: glycosyl transferase family 2 YP_003696446.1 COGs: COG0584 glycerophosphoryl diester phosphodiesterase; InterPro IPR004129:IPR017946:IPR000909; KEGG: pac:PPA1839 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: D0YTV4 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase family YP_003696447.1 InterPro IPR011701:IPR016196; KEGG: pac:PPA1837 membrane protein, permease; PFAM: major facilitator superfamily MFS_1; SPTR: C0VTP9 Major facilitator family transporter; PFAM: Major Facilitator Superfamily YP_003696448.1 KEGG: prw:PsycPRwf_1453 LysR family transcriptional regulator; SPTR: C2KPU0 uncharacterized protein YP_003696449.1 InterPro IPR001254:IPR009003:IPR001314:IPR018114; KEGG: cdi:DIP0736 protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; SPTR: C2BVZ1 Protease; PFAM: Trypsin YP_003696450.1 KEGG: cdi:DIP0737 hypothetical protein; SPTR: C2BVZ2 uncharacterized protein; PFAM: protein of unknown function (DUF418) YP_003696451.1 COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR016040:IPR005888; KEGG: xce:Xcel_2563 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: D0WPK4 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_003696452.1 COGs: COG1134 ABC-type polysaccharide/polyol phosphate transporter ATPase component; InterPro IPR003593:IPR003439; KEGG: lxx:Lxx05010 lipopolysaccharide exporter; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: C1RIM8 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PFAM: ABC transporter YP_003696453.1 COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease; InterPro IPR013525:IPR000412; KEGG: lxx:Lxx05020 lipopolysaccharide exporter; PFAM: ABC transporter; SPTR: C0W8E3 polysaccharide ABC superfamily ATP binding cassette transporter membrane protein; PFAM: ABC transporter YP_003696454.1 KEGG: nml:Namu_4203 glycosyl transferase family 2; SPTR: C1RIN5 Predicted glycosyltransferase (Fragment) YP_003696455.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173:IPR001296; KEGG: nml:Namu_4203 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; glycosyl transferase group 1; SPTR: C1RIN5 Predicted glycosyltransferase (Fragment); PFAM: glycosyl transferases group 1; glycosyl transferase family 2; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003696456.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bfa:Bfae_20890 glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: C7ME89 glycosyl transferase; PFAM: glycosyl transferase family 2 YP_003696457.1 KEGG: cai:Caci_8173 hypothetical protein; SPTR: C0VZS1 uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2304) YP_003696458.1 KEGG: ace:Acel_0695 hypothetical protein; SPTR: A0LSQ8 uncharacterized protein YP_003696459.1 KEGG: rsa:RSal33209_1610 hypothetical protein; SPTR: D0WPI8 uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2304) YP_003696460.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: xce:Xcel_2568 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: D0WPI9 Dolichyl-phosphate mannose synthase; PFAM: glycosyl transferase family 2 YP_003696461.1 InterPro IPR018674; KEGG: lxx:Lxx05060 hypothetical protein; PFAM: protein of unknown function DUF2142, membrane; SPTR: A7BEE9 uncharacterized protein; PFAM: Predicted membrane protein (DUF2142) YP_003696462.1 KEGG: mva:Mvan_5388 integral membrane protein; SPTR: D1BC66 uncharacterized protein YP_003696463.1 InterPro IPR001173; KEGG: art:Arth_2683 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: A0JYE2 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2 YP_003696464.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: llk:LLKF_0209 glycosyltransferase, family 2; PFAM: glycosyl transferase family 2; SPTR: C0FV38 uncharacterized protein; PFAM: glycosyl transferase family 2 YP_003696465.1 COGs: COG3475 LPS biosynthesis protein; InterPro IPR007074; KEGG: apv:Apar_1000 LicD family protein; PFAM: LicD family protein; SPTR: C0W8F2 Possible lipopolysaccharide cholinephosphotransferase; PFAM: LICD protein Family YP_003696466.1 InterPro IPR000620; KEGG: ccu:Ccur_08310 integral membrane protein DUF6; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C0W8F3 integral membrane protein; PFAM: EamA-like transporter family YP_003696467.1 COGs: COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes; InterPro IPR000835:IPR002573:IPR011009; KEGG: apv:Apar_1003 transcriptional regulator, MarR family; PFAM: Choline/ethanolamine kinase; regulatory protein MarR; SPTR: A7BEG2 uncharacterized protein; PFAM: Choline/ethanolamine kinase; nucleotidyl transferase YP_003696468.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: ape:APE_2066.1 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: C0W8F1 N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein; PFAM: glycosyl transferases group 1 YP_003696469.1 InterPro IPR002797; KEGG: apv:Apar_0999 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: C0W8F7 uncharacterized protein; PFAM: polysaccharide biosynthesis protein YP_003696470.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913:IPR016040; KEGG: bcv:Bcav_1209 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: D0WPJ0 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_003696471.1 KEGG: mxa:MXAN_0916 kynurenine 3-monooxygenase; SPTR: C1YGQ0 uncharacterized protein YP_003696472.1 COGs: COG1106 ATPase; KEGG: cef:CE2900 hypothetical protein; SPTR: Q8FSZ2 uncharacterized protein YP_003696473.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888:IPR014710:IPR011051; KEGG: xce:Xcel_2560 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: D0WPJ1 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_003696474.1 InterPro IPR002514; KEGG: kse:Ksed_22010 transposase; PFAM: transposase IS3/IS911 family protein; SPTR: C2BM30 ISMyma01 transposase; manually curated; PFAM: Integrase core domain; transposase YP_003696475.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173:IPR006446; KEGG: ajs:Ajs_0541 rhamnosyltransferase; PFAM: glycosyl transferase family 2; SPTR: D0WPJ2 Rhamnosyltransferase; TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase family 2; TIGRFAM: L-rhamnosyltransferase YP_003696476.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: xce:Xcel_2557 glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; SPTR: A7B922 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form YP_003696477.1 InterPro IPR000620; KEGG: ccu:Ccur_08310 integral membrane protein DUF6; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C0W8F3 integral membrane protein; PFAM: EamA-like transporter family YP_003696478.1 KEGG: rsa:RSal33209_0014 hypothetical protein; SPTR: A9WR40 uncharacterized protein YP_003696479.1 COGs: COG0652 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130:IPR015891; KEGG: bcv:Bcav_0019 peptidylprolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; PRIAM: peptidylprolyl isomerase; SPTR: D0YP84 peptidyl-prolyl cis-trans isomerase B; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_003696480.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: jde:Jden_0165 rhomboid family protein; PFAM: rhomboid family protein; SPTR: A7BB19 uncharacterized protein; PFAM: Rhomboid family YP_003696481.1 InterPro IPR009619; KEGG: bcv:Bcav_0021 protein of unknown function UPF0233; PFAM: protein of unknown function UPF0233; SPTR: D0WKX8 cylicin-2; PFAM: Uncharacterised protein family (UPF0233) YP_003696482.1 COGs: COG3764 Sortase (surface protein transpeptidase); InterPro IPR005754; KEGG: rmu:RMDY18_19620 sortase; PFAM: peptidase C60 sortase A and B; SPTR: C6R304 Sortase family protein; TIGRFAM: sortase family protein; PFAM: Sortase family; TIGRFAM: LPXTG-site transpeptidase (sortase) family protein YP_003696483.1 KEGG: jde:Jden_0284 hypothetical protein; SPTR: C7QZ49 uncharacterized protein YP_003696484.1 InterPro IPR002525:IPR003346; KEGG: mlu:Mlut_12160 transposase; PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; SPTR: C0W956 transposase, IS111A/IS1328/IS1533 (Fragment); PFAM: transposase IS116/IS110/IS902 family; transposase YP_003696485.1 COGs: COG0515 serine/threonine protein kinase; InterProIPR020635:IPR002290:IPR005543:IPR017442:IPR 005503:IPR000719:IPR011009:IPR017441:IPR008271; KEGG: xce:Xcel_0018 serine/threonine protein kinase with PASTA sensor(s); PFAM: serine/threonine-protein kinase-like domain; flagellar basal body-associated protein FliL; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; PASTA domain containing protein; SPTR: D0WKX3 serine/threonine protein kinase; PFAM: protein kinase domain; PASTA domain YP_003696486.1 COGs: COG0768 cell division protein FtsI/penicillin-binding protein 2; InterPro IPR001460:IPR012338; KEGG: jde:Jden_0172 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; SPTR: D0WKX2 Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain YP_003696487.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: bcv:Bcav_0029 cell cycle protein; PFAM: cell cycle protein; SPTR: D0WKX1 cell division protein FtsW; PFAM: cell cycle protein YP_003696488.1 COGs: COG0631 serine/threonine protein phosphatase; InterPro IPR001932:IPR014045; KEGG: bcv:Bcav_0030 protein serine/threonine phosphatase; PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; SPTR: D0WKX0 protein phosphatase 2C; PFAM: protein phosphatase 2C YP_003696489.1 COGs: COG1716 FOG: FHA domain; InterPro IPR000253:IPR008984; KEGG: jde:Jden_0175 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: D0WKW9 FHA domain protein; PFAM: FHA domain YP_003696490.1 COGs: COG1716 FOG: FHA domain; InterPro IPR000253:IPR008984; KEGG: bcv:Bcav_0032 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: C1RFN6 FHA domain-containing protein; PFAM: protein of unknown function (DUF2662); FHA domain YP_003696491.1 COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: krh:KRH_07930 hypothetical protein; PFAM: protein of unknown function UPF0126; SPTR: B2GKC0 Hypothetical membrane protein; PFAM: UPF0126 domain YP_003696492.1 COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: sse:Ssed_1314 hypothetical protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; SPTR: D0WKT6 Appr-1-p processing enzyme family domain protein; PFAM: Macro domain YP_003696493.1 COGs: COG0328 ribonuclease HI; InterPro IPR002156:IPR012337; KEGG: mmr:Mmar10_2217 RNase HI; PFAM: ribonuclease H; SPTR: D0WKT5 ribonuclease HI; PFAM: RNase H YP_003696494.1 COGs: COG1770 Protease II; InterPro IPR004106:IPR001375:IPR002470; KEGG: bfa:Bfae_03460 oligopeptidase B; PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; PRIAM: oligopeptidase B; SPTR: D0WKS9 Protease II; PFAM: prolyl oligopeptidase, N-terminal beta-propeller domain; prolyl oligopeptidase family YP_003696495.1 InterPro IPR011335; KEGG: bfa:Bfae_23020 hypothetical protein; SPTR: C2KMY9 uncharacterized protein YP_003696496.1 COGs: COG0775 nucleoside phosphorylase; InterPro IPR000845:IPR010049; KEGG: krh:KRH_15970 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1; PRIAM: adenosylhomocysteine nucleosidase; SPTR: D0WKS8 methylthioadenosine nucleosidase/adenosylhomocysteine nucleosidase; TIGRFAM: MTA/SAH nucleosidase; PFAM: phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_003696497.1 COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis; InterPro IPR003815:IPR011249; KEGG: pac:PPA0450 S-ribosylhomocysteinase; PFAM: LuxS protein; PRIAM: S-ribosylhomocysteine lyase; SPTR: D0WKS7 S-ribosylhomocysteinase LuxS; PFAM: S-ribosylhomocysteinase (LuxS) YP_003696498.1 COGs: COG0695 glutaredoxin and related protein; InterPro IPR002109:IPR012335:IPR011909:IPR012336; KEGG: bcv:Bcav_0095 glutaredoxin-like protein NrdH; PFAM: glutaredoxin; SPTR: D0WKQ6 glutaredoxin; TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; TIGRFAM: glutaredoxin-like protein NrdH YP_003696499.1 COGs: COG1780 protein involved in ribonucleotide reduction; InterPro IPR004465; KEGG: bfa:Bfae_24920 ribonucleoside-diphosphate reductase 2, operon protein NrdI; PFAM: NrdI family protein; SPTR: D0WKQ5 NrdI protein; TIGRFAM: NrdI protein; PFAM: NrdI Flavodoxin like; TIGRFAM: ribonucleoside-diphosphate reductase 2, operon protein nrdI YP_003696500.1 InterProIPR013554:IPR013509:IPR000788:IPR013346:IPR 008926; KEGG: mtb:TBMG_00917 ribonucleoside-diphosphate reductase subunit alpha NrdE; PFAM: ribonucleotide reductase large subunit; ribonucleotide reductase domain protein; ribonucleotide reductase large subunit domain protein; SPTR: D0WKQ4 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, subunit alpha; PFAM: ribonucleotide reductase N-terminal; ribonucleotide reductase, all-alpha domain; ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, subunit alpha YP_003696501.1 COGs: COG0208 ribonucleotide reductase beta subunit; InterPro IPR000358:IPR012348:IPR009078; KEGG: mab:MAB_3404c ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase; PRIAM: ribonucleoside-diphosphate reductase; SPTR: D0WKN6 ribonucleoside-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase, small chain YP_003696503.1 COGs: COG0394 protein-tyrosine-phosphatase; InterPro IPR017867:IPR000106; KEGG: kra:Krad_3711 protein tyrosine phosphatase; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; SPTR: D0YS62 Low molecular weight protein-tyrosine-phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_003696504.1 InterPro IPR006640; KEGG: nca:Noca_3805 protein of unknown function SprT; SMART: protein of unknown function SprT; SPTR: A1SNC0 uncharacterized protein; PFAM: SprT-like family YP_003696505.1 KEGG: rsh:Rsph17029_3288 hypothetical protein; SPTR: D0WKM7 uncharacterized protein YP_003696506.1 COGs: COG1126 ABC-type polar amino acid transporter ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: blt:Balat_0551 ATP binding protein of ABC transporter; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: A7BC62 uncharacterized protein; PFAM: ABC transporter YP_003696507.1 COGs: COG0765 ABC-type amino acid transporter permease; InterPro IPR000515:IPR010065; KEGG: xce:Xcel_0100 polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: D0WQP0 ABC amino acid transporter permease; TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: Binding-protein-dependent transporter inner membrane component; TIGRFAM: amine acid ABC transporter permease, 3-TM region, His/Glu/Gln/Arg/opine family YP_003696508.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001320:IPR001638:IPR018313; KEGG: bln:Blon_2021 extracellular solute-binding protein, family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; SPTR: B7GUE2 extracellular solute-binding protein, family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_003696509.1 COGs: COG1643 HrpA-like helicase; InterProIPR014001:IPR003593:IPR001650:IPR007502:IPR 011709:IPR014021:IPR010222; KEGG: jde:Jden_0240 ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; helicase; protein of unknown function DUF1605; SMART: DEAD-like helicase ; ATPase AAA; helicase; SPTR: D0WKL4 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); Domain of unknown function (DUF3418); Domain of unknown function (DUF1605); TIGRFAM: ATP-dependent helicase HrpA YP_003696510.1 COGs: COG3021 conserved hypothetical protein; InterPro IPR005135; KEGG: bcv:Bcav_0233 endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase; SPTR: C5BVQ8 endonuclease/exonuclease/phosphatase YP_003696511.1 COGs: COG4850 conserved hypothetical protein; InterPro IPR019236; KEGG: cgl:NCgl2176 hypothetical protein; PFAM: protein of unknown function DUF2183; SPTR: D0WKK5 ABC transporter ATP-binding protein; PFAM: Uncharacterized conserved protein (DUF2183) YP_003696512.1 COGs: COG2188 transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: mva:Mvan_4015 UbiC transcription regulator-associated domain-containing protein; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: A7BEH3 uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_003696513.1 COGs: COG0033 phosphoglucomutase; InterProIPR005844:IPR005845:IPR005846:IPR005843:IPR 016055:IPR005852:IPR016066; KEGG: xce:Xcel_0168 phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: D0WKG6 phosphoglucomutase, alpha-D-glucose phosphate-specific; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific YP_003696514.1 COGs: COG0392 integral membrane protein; InterPro IPR005242:IPR018170; KEGG: bcv:Bcav_4032 integral membrane protein; PFAM: conserved hypothetical protein; SPTR: D0WKF9 uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_003696515.1 COGs: COG2217 Cation transport ATPase; InterProIPR006121:IPR008250:IPR005834:IPR006403:IPR 006416:IPR001757:IPR018303:IPR017969:IPR000150; KEGG: jde:Jden_2501 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: D0WKF6 Copper-exporting ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase P; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003696516.1 InterPro IPR006121:IPR017969; KEGG: mlu:Mlut_21360 copper chaperone; PFAM: Heavy metal transport/detoxification protein; SPTR: C0W4J0 MerTP family Hg2+ permease, binding protein; PFAM: Heavy-metal-associated domain YP_003696517.1 KEGG: stp:Strop_4046 hypothetical protein; SPTR: D0WKF3 uncharacterized protein YP_003696518.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: sro:Sros_4049 alkaline phosphatase; PFAM: SNARE associated Golgi protein; SPTR: C4ELT3 Uncharacterized membrane-associated protein; PFAM: SNARE associated Golgi protein YP_003696519.1 COGs: COG1950 membrane protein; InterPro IPR007165; KEGG: bcv:Bcav_3970 membrane protein of unknown function; PFAM: membrane protein of unknown function; SPTR: C5C571 uncharacterized protein; PFAM: membrane protein of unknown function YP_003696520.1 KEGG: jde:Jden_2483 hypothetical protein; SPTR: D0WKD9 membrane protein YP_003696521.1 KEGG: bcv:Bcav_2625 hypothetical protein; SPTR: D0WKD8 uncharacterized protein YP_003696522.1 COGs: COG0710 3-dehydroquinate dehydratase; InterPro IPR001381:IPR013785; KEGG: lmc:Lm4b_00514 3-dehydroquinate dehydratase; PFAM: dehydroquinase class I; PRIAM: 3-dehydroquinate dehydratase; SPTR: D0E052 3-dehydroquinate dehydratase, type I; PFAM: type I 3-dehydroquinase; TIGRFAM: 3-dehydroquinate dehydratase, type I YP_003696523.1 COGs: COG2236 phosphoribosyltransferase; InterPro IPR000836; KEGG: bfa:Bfae_22270 predicted phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: C7MEM7 Predicted phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain YP_003696524.1 COGs: COG0803 ABC-type metal ion transporter periplasmic component/surface adhesin; InterPro IPR006127:IPR006128:IPR006129; KEGG: cdi:DIP0169 hypothetical protein; PFAM: periplasmic solute binding protein; SPTR: Q6NK68 secreted protein; PFAM: Periplasmic solute binding protein family YP_003696525.1 COGs: COG1121 ABC-type Mn/Zn transporters ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: cag:Cagg_3554 ABC transporter related; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: B8G9N9 ABC transporter; PFAM: ABC transporter YP_003696526.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transporters permeases; InterPro IPR001626; KEGG: cdi:DIP0171 hypothetical protein; PFAM: ABC transporter; SPTR: C0VY74 Mn2+, Zn2+ ABC superfamily ATP binding cassette transporter membrane protein; PFAM: ABC 3 transport family YP_003696527.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transporters permeases; InterPro IPR001626; KEGG: car:cauri_0331 manganese ABC transporter membrane protein; PFAM: ABC transporter; SPTR: C3PKJ4 Manganese ABC transporter membrane protein; PFAM: ABC 3 transport family YP_003696528.1 COGs: COG1321 Mn-dependent transcriptional regulator; InterPro IPR001367:IPR007167:IPR011991:IPR008988; KEGG: bfa:Bfae_31300 Mn-dependent transcriptional regulator; PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; SPTR: C7MB03 Mn-dependent transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain YP_003696529.1 COGs: COG0717 deoxycytidine deaminase; InterPro IPR008180:IPR011962; KEGG: bcv:Bcav_3823 deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; SPTR: C5C4E1 deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); TIGRFAM: deoxycytidine triphosphate deaminase YP_003696530.1 COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter Mnhsubunit alpha; InterPro IPR001750:IPR007182:IPR003916; KEGG: bcv:Bcav_3818 NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter Mnhsubunit beta-related protein; SPTR: C5C4D6 NADH dehydrogenase (Quinone); PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; Domain related to Mnhsubunit beta of Na+/H+ antiporter; 2.A.63.1 YP_003696531.1 COGs: COG1006 Multisubunit Na+/H+ antiporter MnhC subunit; InterPro IPR001133; KEGG: bcv:Bcav_3817 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: C5C4D5 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; 2.A.63.1 YP_003696532.1 COGs: COG0651 formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750:IPR003918; KEGG: bcv:Bcav_3816 NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: C5C4D4 NADH dehydrogenase (Quinone); PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; 2.A.63.1 YP_003696533.1 COGs: COG1863 Multisubunit Na+/H+ antiporter MnhE subunit; InterPro IPR002758; KEGG: jde:Jden_2436 multisubunit Na+/H+ antiporter MnhE subunit-like protein; PFAM: cation antiporter; SPTR: D1BFC8 Multisubunit Na+/H+ antiporter, MnhE subunit; PFAM: Na+/H+ ion antiporter subunit; 2.A.63.1 YP_003696534.1 InterPro IPR007208; KEGG: xce:Xcel_3183 multiple resistance and pH regulation protein F; PFAM: multiple resistance and pH regulation protein F; SPTR: D1C0I0 Multiple resistance and pH regulation protein F; PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF); 2.A.63.1 YP_003696535.1 COGs: COG1320 Multisubunit Na+/H+ antiporter MnhG subunit; InterPro IPR005133; KEGG: bcv:Bcav_3813 monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; SPTR: C5C4D1 Monovalent cation/proton antiporter, MnhG/PhaG subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; 2.A.63.1 YP_003696536.1 KEGG: art:Arth_3867 hypothetical protein; SPTR: D0WKC7 uncharacterized protein YP_003696537.1 COGs: COG4143 ABC-type thiamine transporter periplasmic component; InterPro IPR006059:IPR005948; KEGG: bcv:Bcav_3809 ABC transporter periplasmic binding protein, ThiB subfamily; PFAM: extracellular solute-binding protein family 1; SPTR: C0W4A6 ABC superfamily ATP binding cassette transporter periplasmic-binding protein; TIGRFAM: ABC transporter periplasmic binding protein, thiB subfamily; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: ABC transporter periplasmic binding protein, thiB subfamily YP_003696538.1 COGs: COG1178 ABC-type Fe3+ transporter permease component; InterPro IPR000515; KEGG: bcv:Bcav_3808 binding-protein-dependent transporters inner membrane component; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: C5C4C6 Binding-protein-dependent transporters inner membrane component; PFAM: Binding-protein-dependent transporter inner membrane component YP_003696539.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593:IPR003439:IPR017871; KEGG: mlu:Mlut_19480 ABC-type spermidine/putrescine transporter, ATPase component; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: C5C6U1 ABC-type spermidine/putrescine transporter, ATPase component; PFAM: ABC transporter YP_003696540.1 COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883:IPR013781:IPR017853:IPR001540; KEGG: sco:SCO4860 secreted hydrolase; PFAM: glycoside hydrolase, family 20, catalytic core; SPTR: C8P1S6 Lacto-N-biosidase; PFAM: glycosyl hydrolase family 20, catalytic domain YP_003696541.1 COGs: COG0395 ABC-type sugar transporter permease component; InterPro IPR000515; KEGG: bfa:Bfae_10970 carbohydrate ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C7MBH2 carbohydrate ABC transporter membrane protein; PFAM: Binding-protein-dependent transporter inner membrane component YP_003696542.1 COGs: COG1175 ABC-type sugar transporters permease components; InterPro IPR000515; KEGG: bfa:Bfae_10960 carbohydrate ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C7MBH1 carbohydrate ABC transporter membrane protein; PFAM: Binding-protein-dependent transporter inner membrane component YP_003696543.1 COGs: COG1653 ABC-type sugar transporter periplasmic component; InterPro IPR006059; KEGG: pac:PPA1454 solute-binding protein of transporter; PFAM: extracellular solute-binding protein family 1; SPTR: Q6A7R3 Solute-binding protein of transporter; PFAM: Bacterial extracellular solute-binding protein YP_003696544.1 COGs: COG1085 Galactose-1-phosphate uridylyltransferase; InterPro IPR011146:IPR000169; KEGG: cef:CE1985 hypothetical protein; SPTR: D0WKB8 UTP--hexose-1-phosphate uridylyltransferase YP_003696545.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR016196:IPR001958; KEGG: kse:Ksed_04650 arabinose efflux permease family protein; PFAM: major facilitator superfamily MFS_1; SPTR: C5VDV5 Permease, major facilitator family; PFAM: Major Facilitator Superfamily YP_003696546.1 COGs: COG2348 Uncharacterized protein involved in methicillin resistance; InterPro IPR003447:IPR016181; KEGG: apr:Apre_0286 methicillin resistance protein; PFAM: methicillin resistance protein; SPTR: C7RFS6 methicillin resistance protein; PFAM: FemAB family YP_003696547.1 COGs: COG3919 ATP-grasp protein; InterPro IPR003806:IPR011761:IPR005479; KEGG: apr:Apre_1663 ATP-grasp protein; PFAM: protein of unknown function DUF201; SPTR: C7RES1 ATP-grasp protein; PFAM: carbamoyl-phosphate synthase L chain, ATP binding domain YP_003696548.1 COGs: COG0662 mannose-6-phosphate isomerase; InterPro IPR013096:IPR014710:IPR011051; KEGG: sub:SUB0906 hypothetical protein; PFAM: cupin; SPTR: A8U7G9 uncharacterized protein; PFAM: Cupin domain YP_003696549.1 COGs: COG1505 serine protease of the peptidase family S9A; InterPro IPR001375:IPR004106:IPR002470; KEGG: sml:Smlt4084 exported oligopeptidase; PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; PRIAM: prolyl oligopeptidase; SPTR: B2FHW1 exported oligoPEPTIDASE; PFAM: prolyl oligopeptidase, N-terminal beta-propeller domain; prolyl oligopeptidase family YP_003696550.1 COGs: COG0443 Molecular chaperone; InterPro IPR013126:IPR012725:IPR001023:IPR018181; KEGG: bcv:Bcav_3709 chaperone protein DnaK; PFAM: heat shock protein 70; SPTR: D1BKD0 Chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK YP_003696551.1 COGs: COG0576 Molecular chaperone GrpE (heat shock protein); InterPro IPR000740:IPR009012; KEGG: bcv:Bcav_3708 GrpE protein; PFAM: GrpE protein; SPTR: D0WLG4 protein GrpE; PFAM: GrpE YP_003696552.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623:IPR002939:IPR008971:IPR003095; KEGG: bcv:Bcav_3707 chaperone DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: D0WLG5 DnaJ protein; PFAM: DnaJ domain; DnaJ C terminal region YP_003696553.1 InterPro IPR000551:IPR009061; KEGG: bfa:Bfae_12190 predicted transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: D0WLG6 heat shock regulator protein HspR; PFAM: MerR family regulatory protein YP_003696554.1 InterPro IPR000086:IPR015797:IPR020084:IPR000059; KEGG: nca:Noca_0342 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: A1SDK1 NUDIX hydrolase; PFAM: NUDIX domain YP_003696555.1 KEGG: GL12096 gene product from transcript GL12096-RA; SPTR: B3CIR0 uncharacterized protein YP_003696556.1 COGs: COG2374 extracellular nuclease; InterPro IPR005135:IPR019931; KEGG: cgb:cg2868 extracellular nuclease; PFAM: endonuclease/exonuclease/phosphatase; SPTR: C0WGX8 endonuclease/exonuclease/phosphatase; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: endonuclease/exonuclease/phosphatase family; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696557.1 COGs: COG2606 conserved hypothetical protein; InterPro IPR007214:IPR004369; KEGG: blj:BLD_0228 hypothetical protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: B3DQS8 uncharacterized protein ebsC; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein YP_003696558.1 InterPro IPR000182:IPR016181; KEGG: psa:PST_1793 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: C2ARL2 acetyltransferase, N-acetylglutamate synthase; PFAM: acetyltransferase (GNAT) family YP_003696559.1 COGs: COG3476 tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog); InterPro IPR004307; KEGG: art:Arth_1976 TspO and MBR like proteins; PFAM: TspO/MBR family protein; SPTR: A0JWD7 TspO and MBR like proteins; PFAM: TspO/MBR family YP_003696560.1 COGs: COG0008 glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR020058:IPR014729:IPR020060:IPR001412; KEGG: mgi:Mflv_1233 glutamyl-Q tRNA(Asp) synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: D0WLH0 glutamate--tRNA ligase; PFAM: tRNA synthetases class I (E and Q), catalytic domain YP_003696561.1 KEGG: car:cauri_1311 hypothetical protein; SPTR: C6RBR2 uncharacterized protein YP_003696562.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593:IPR004176:IPR003959:IPR013093:IPR 019489:IPR017730:IPR001270:IPR018368; KEGG: bcv:Bcav_3653 ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA central domain protein; Clp domain protein; Clp ATPase-like; SMART: ATPase AAA; SPTR: D0WLI6 ATP-dependent chaperone protein ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB YP_003696563.1 COGs: COG1113 gamma-aminobutyrate permease and related permease; InterPro IPR004841:IPR002293:IPR004840; KEGG: sen:SACE_2119 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: C2KT84 APC family amino acid-polyamine-organocation transporter; PFAM: Amino acid permease YP_003696564.1 COGs: COG1260 myo-inositol-1-phosphate synthase; InterPro IPR002587:IPR013021:IPR016040; KEGG: cef:CE2831 hypothetical protein; PFAM: myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase GAPDH domain protein; SPTR: Q8FLN7 uncharacterized protein; PFAM: myo-inositol-1-phosphate synthase; TIGRFAM: inositol 1-phosphate synthase, Actinobacterial type YP_003696565.1 COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR001466:IPR012338; KEGG: nfa:nfa16050 hypothetical protein; PFAM: beta-lactamase; SPTR: D0WLK5 beta-lactamase; PFAM: beta-lactamase YP_003696566.1 COGs: COG0708 exonuclease III; InterPro IPR005135:IPR004808; KEGG: jde:Jden_2428 exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; SPTR: D0WLN3 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth) YP_003696567.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198:IPR016040:IPR002347; KEGG: bcv:Bcav_3647 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: D0WLN7 oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase YP_003696568.1 InterPro IPR000086:IPR015797:IPR020476; KEGG: cgb:cg1303 NTP pyrophosphohydrolase; PFAM: NUDIX hydrolase; SPTR: Q8NR99 NTP pyrophosphohydrolases including oxidative damage repair enzymes; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein YP_003696569.1 KEGG: bcv:Bcav_3646 orotate phosphoribosyltransferase; SPTR: C0VYD8 Orotate phosphoribosyltransferase YP_003696570.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: kra:Krad_4172 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: D0WLP3 RNA methyltransferase, TrmH family; PFAM: SpoU rRNA methylase family YP_003696571.1 KEGG: gbr:Gbro_1394 hypothetical protein; SPTR: D0YUD4 uncharacterized protein; PFAM: protein of unknown function (DUF559) YP_003696572.1 COGs: COG0191 fructose/tagatose bisphosphate aldolase; InterPro IPR000771:IPR013785:IPR006411; KEGG: xce:Xcel_3142 fructose-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; SPTR: C0VYF0 fructose-bisphosphate aldolase; TIGRFAM: fructose-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, yeast/E. coli subtype YP_003696573.1 InterPro IPR006104; KEGG: bcv:Bcav_4017 hypothetical protein; PFAM: glycoside hydrolase family 2 sugar binding; SPTR: C0W1A2 uncharacterized protein; PFAM: glycosyl hydrolases family 2, sugar binding domain YP_003696574.1 COGs: COG1653 ABC-type sugar transporter periplasmic component; InterPro IPR006059; KEGG: pac:PPA2295 solute-binding lipoprotein; PFAM: extracellular solute-binding protein family 1; SPTR: C0W274 ABC superfamily ATP binding cassette transporter solute-binding lipoprotein; PFAM: Bacterial extracellular solute-binding protein YP_003696575.1 COGs: COG1175 ABC-type sugar transporters permease components; InterPro IPR000515; KEGG: blo:BL1639 permease of ABC transporter for sugars; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: C0W275 Sugar ABC superfamily ATP binding cassette transporter permease; PFAM: Binding-protein-dependent transporter inner membrane component YP_003696576.1 COGs: COG0395 ABC-type sugar transporter permease component; InterPro IPR000515; KEGG: pac:PPA2293 binding-protein-dependent transporter; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: C0W276 Sugar ABC superfamily ATP binding cassette transporter membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component YP_003696577.1 KEGG: nfa:nfa51010 hypothetical protein; SPTR: C1RFL0 uncharacterized protein YP_003696578.1 KEGG: pac:PPA1774 hypothetical protein; SPTR: D0WP61 uncharacterized protein YP_003696579.1 KEGG: pac:PPA1774 hypothetical protein; SPTR: D0WLQ6 acidic proline-rich protein PRP33 YP_003696580.1 COGs: COG1274 phosphoenolpyruvate carboxykinase (GTP); InterPro IPR008209:IPR008210:IPR013035:IPR018091; KEGG: tcu:Tcur_2819 phosphoenolpyruvate carboxykinase (GTP); PFAM: phosphoenolpyruvate carboxykinase (GTP); PRIAM: phosphoenolpyruvate carboxykinase (GTP); SPTR: A7BA26 uncharacterized protein; PFAM: phosphoenolpyruvate carboxykinase YP_003696581.1 COGs: COG0152 phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR001636:IPR013816:IPR010916; KEGG: mlu:Mlut_18500 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: D0WLR3 phosphoribosylaminoimidazolesuccinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_003696582.1 COGs: COG0334 glutamate dehydrogenase/leucine dehydrogenase; InterProIPR006097:IPR006096:IPR016040:IPR014362:IPR 006095; KEGG: jde:Jden_2359 glutamate dehydrogenase (NADP(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; PRIAM: glutamate dehydrogenase (NADP(+)); SPTR: C0W243 glutamate dehydrogenase; PFAM: glutamate/Leucine/phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_003696583.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843:IPR008334:IPR019931:IPR006179; KEGG: cjk:jk1044 5'-nucleotidase family protein; PFAM: 5'-nucleotidase domain protein; metallophosphoesterase; SPTR: Q4JVE9 5'-nucleotidase family protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696584.1 KEGG: bcv:Bcav_3525 hypothetical protein; SPTR: C5C2S3 uncharacterized protein YP_003696585.1 KEGG: kra:Krad_4039 hypothetical protein; SPTR: D0WLU3 uncharacterized protein; PFAM: protein of unknown function (DUF3073) YP_003696586.1 InterPro IPR000551:IPR010093:IPR009061; KEGG: jde:Jden_2349 excisionase; PFAM: regulatory protein MerR; SPTR: C7R2J2 excisionase; TIGRFAM: excisionase; PFAM: MerR family regulatory protein; TIGRFAM: DNA binding domain, excisionase family YP_003696587.1 KEGG: bcv:Bcav_3513 hypothetical protein; SPTR: D0WLU4 membrane protein; PFAM: protein of unknown function (DUF3618) YP_003696588.1 InterPro IPR009937; KEGG: bcv:Bcav_3512 protein of unknown function DUF1469; PFAM: protein of unknown function DUF1469; SPTR: C0VYT0 uncharacterized protein; PFAM: protein of unknown function (DUF1469) YP_003696589.1 COGs: COG0728 membrane protein virulence factor; InterPro IPR004268; KEGG: bcv:Bcav_4210 integral membrane protein MviN; PFAM: virulence factor MVIN family protein; SPTR: D0WQR9 integral membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN YP_003696590.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685:IPR010920:IPR018062; KEGG: cmi:CMM_1076 small-conductance mechanosensitive channel; PFAM: MscS Mechanosensitive ion channel; SPTR: D0WM12 Mechanosensitive ion channel family protein; PFAM: Mechanosensitive ion channel YP_003696591.1 COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; InterPro IPR002579:IPR011057; KEGG: bcv:Bcav_3481 methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; PRIAM: peptide-methionine (R)-S-oxide reductase; SPTR: D1BE41 methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase YP_003696592.1 COGs: COG3568 metal-dependent hydrolase; InterPro IPR005135; KEGG: mkm:Mkms_0980 endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase; SPTR: Q1BDF7 endonuclease/exonuclease/phosphatase; PFAM: endonuclease/exonuclease/phosphatase family YP_003696593.1 COGs: COG5006 permease DMT superfamily protein; InterPro IPR000620; KEGG: bcv:Bcav_3478 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C0W5Q8 integral membrane protein; PFAM: EamA-like transporter family YP_003696594.1 KEGG: bcv:Bcav_3430 hypothetical protein; SPTR: D0WM32 uncharacterized protein YP_003696595.1 COGs: COG0226 ABC-type phosphate transporter periplasmic component; InterPro IPR006059:IPR005673; KEGG: jde:Jden_2082 phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: D1BD79 phosphate-binding protein; TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; TIGRFAM: phosphate ABC transporter phosphate-binding protein YP_003696596.1 COGs: COG0573 ABC-type phosphate transporter permease; InterPro IPR000515:IPR011864; KEGG: bcv:Bcav_3425 phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: D1BD78 phosphate ABC transporter membrane protein; TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: Binding-protein-dependent transporter inner membrane component; TIGRFAM: phosphate ABC transporter permease PstC YP_003696597.1 COGs: COG0581 ABC-type phosphate transporter permease; InterPro IPR000515:IPR005672; KEGG: bcv:Bcav_3424 phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: C5C241 phosphate ABC transporter inner membrane subunit PstA; TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: Binding-protein-dependent transporter inner membrane component; TIGRFAM: phosphate ABC transporter permease PstA YP_003696598.1 COGs: COG1117 ABC-type phosphate transporter ATPase component; InterProIPR003593:IPR003439:IPR015850:IPR005670:IPR 017871; KEGG: jde:Jden_2079 phosphate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C7R0Z3 phosphate ABC transporter ATPase subunit; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter ATP-binding protein YP_003696599.1 COGs: COG0306 phosphate/sulfate permease; InterPro IPR001204; KEGG: bcv:Bcav_3421 phosphate transporter; PFAM: phosphate transporter; SPTR: C0VYU7 PiT family inorganic phosphate transporter; PFAM: phosphate transporter family YP_003696600.1 COGs: COG1392 phosphate transport regulator (distant homolog of PhoU); InterPro IPR018445; KEGG: xce:Xcel_0299 protein of unknown function DUF47; PFAM: Putitive phosphate transport regulator; SPTR: D0WM40 Pit accessory protein; PFAM: protein of unknown function DUF47; TIGRFAM: conserved hypothetical protein TIGR00153 YP_003696601.1 COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: jde:Jden_1694 amino acid carrier protein; PFAM: sodium:alanine symporter; SPTR: C0U4P6 Amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein YP_003696602.1 KEGG: bfa:Bfae_23020 hypothetical protein; SPTR: C2KMY9 uncharacterized protein YP_003696603.1 KEGG: bcv:Bcav_3418 hypothetical protein; SPTR: C5C235 uncharacterized protein YP_003696604.1 InterPro IPR014878; KEGG: bcv:Bcav_3416 domain of unknown function DUF1794; PFAM: Domain of unknown function DUF1794; SPTR: D0WM44 uncharacterized protein; PFAM: Domain of unknown function (DUF1794) YP_003696605.1 COGs: COG0354 aminomethyltransferase related to GcvT; InterPro IPR006222:IPR017703; KEGG: xce:Xcel_3028 folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); SPTR: C0W5Y9 glycine cleavage T protein (Aminomethyl transferase); TIGRFAM: folate-binding protein YgfZ; PFAM: Aminomethyltransferase folate-binding domain; glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: folate-binding protein YgfZ YP_003696606.1 COGs: COG1490 D-Tyr-tRNAtyr deacylase; InterPro IPR003732; KEGG: xce:Xcel_3022 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D0WM48 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_003696607.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593:IPR004176:IPR003959:IPR001943:IPR 013093:IPR019489:IPR001270:IPR018368; KEGG: xce:Xcel_0363 ATPase AAA-2 domain protein; PFAM: ATPase AAA; Clp domain protein; ATPase AAA central domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: D0WM50 negative regulator of genetic competence ClpC/MecB; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif YP_003696608.1 InterPro IPR019931; KEGG: cdi:DIP0235 fimbrial subunit; SPTR: Q6NK05 fimbrial subunit; TIGRFAM: LPXTG-motif cell wall anchor domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696609.1 COGs: COG3764 Sortase (surface protein transpeptidase); InterPro IPR005754; KEGG: cjk:jk1700 fimbrial associated sortase-like protein; PFAM: peptidase C60 sortase A and B; SPTR: Q4JTI0 fimbrial associated sortase-like protein; TIGRFAM: sortase family protein; PFAM: Sortase family; TIGRFAM: LPXTG-site transpeptidase (sortase) family protein YP_003696610.1 KEGG: cdi:DIP2223 potential surface-anchored protein; SPTR: C0WGP1 Surface anchored protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696611.1 InterPro IPR001899:IPR019931; KEGG: cjk:jk1702 surface-anchored protein; SPTR: C2BJ20 Possible surface-anchored protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696612.1 InterPro IPR002525:IPR003346; KEGG: mlu:Mlut_12160 transposase; PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; SPTR: C0W956 transposase, IS111A/IS1328/IS1533 (Fragment); PFAM: transposase IS116/IS110/IS902 family; transposase YP_003696613.1 KEGG: amu:Amuc_0584 outer membrane autotransporter barrel domain protein; SPTR: B6B0M8 uncharacterized protein YP_003696614.1 KEGG: rsh:Rsph17029_0016 hypothetical protein; SPTR: A0Z0M5 uncharacterized protein YP_003696615.1 COGs: COG2056 permease; InterPro IPR018461; KEGG: cdi:DIP1661 hypothetical protein; PFAM: Na+/H+ antiporter NhaC-like; SPTR: C0W230 NhaC family sodium:proton (Na+:H+) antiporter; PFAM: Na+/H+ antiporter family YP_003696616.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843:IPR008334:IPR019931:IPR006179; KEGG: cgt:cgR_0412 hypothetical protein; PFAM: 5'-nucleotidase domain protein; metallophosphoesterase; SPTR: D0WQ91 5-nucleotidase; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: 5'-nucleotidase, C-terminal domain; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696617.1 COGs: COG0574 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterProIPR002192:IPR008279:IPR000121:IPR013815:IPR 013816:IPR015813:IPR010121:IPR018274; KEGG: tfu:Tfu_0863 pyruvate phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; PRIAM: pyruvate, phosphate dikinase; SPTR: D0WM96 pyruvate, phosphate dikinase; TIGRFAM: pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase YP_003696618.1 COGs: COG1835 acyltransferase; InterPro IPR002656:IPR013830; KEGG: lxx:Lxx20050 lipopolysaccharide modification acyltransferase; PFAM: acyltransferase 3; SPTR: C0W6X9 Lipopolysaccharide modification acyltransferase; PFAM: acyltransferase family YP_003696619.1 KEGG: xce:Xcel_3007 hypothetical protein; SPTR: A7BBM1 uncharacterized protein YP_003696620.1 COGs: COG2267 lysophospholipase; InterPro IPR000073; KEGG: jde:Jden_2115 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: D0WMB4 Hydrolase, alpha/beta fold family domain protein; PFAM: alpha/beta hydrolase fold YP_003696621.1 InterProIPR000601:IPR001087:IPR013831:IPR002035:IPR 013830; KEGG: pac:PPA1665 hypothetical protein; PFAM: PKD domain containing protein; lipolytic protein G-D-S-L family; SMART: PKD domain containing protein; SPTR: C0VY99 uncharacterized protein; PFAM: GDSL-like Lipase/acylhydrolase; PKD domain YP_003696622.1 KEGG: stp:Strop_4344 protein kinase; SPTR: Q5ZP17 CcV1 protein YP_003696623.1 COGs: COG0791 cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: blt:Balat_0454 cell wall-associated hydrolase; PFAM: NLP/P60 protein; SPTR: D0WMB9 NLP/P60 family protein; PFAM: NlpC/P60 family YP_003696624.1 COGs: COG0221 inorganic pyrophosphatase; InterPro IPR008162; KEGG: bcv:Bcav_0696 inorganic diphosphatase; PFAM: inorganic pyrophosphatase; PRIAM: inorganic diphosphatase; SPTR: D0WMC4 inorganic diphosphatase; PFAM: inorganic pyrophosphatase YP_003696625.1 COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667:IPR012338; KEGG: xce:Xcel_2996 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; SPTR: D0WMC5 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family YP_003696626.1 COGs: COG5282 conserved hypothetical protein; InterPro IPR018766; KEGG: rsa:RSal33209_3221 cytoplasmic protein; PFAM: protein of unknown function DUF2342; SPTR: D0WMC6 uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Uncharacterised conserved protein (DUF2342); TIGRFAM: conserved hypothetical protein YP_003696627.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063:IPR014729:IPR012795; KEGG: bcv:Bcav_0700 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; SPTR: D0WMC7 tRNA(Ile)-lysidine synthase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, N-terminal domain YP_003696628.1 COGs: COG0465 ATP-dependent Zn protease; InterProIPR003593:IPR011546:IPR003959:IPR000642:IPR 005936:IPR003960; KEGG: cms:CMS_0099 cell division protein FtsH-like protein; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; PRIAM: microtubule-severing ATPase; SMART: ATPase AAA; SPTR: D0WMC9 cell division protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_003696629.1 COGs: COG0302 GTP cyclohydrolase I; InterPro IPR020602:IPR001474:IPR018234; KEGG: art:Arth_0152 GTP cyclohydrolase; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: C0W610 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I YP_003696630.1 COGs: COG0294 dihydropteroate synthase; InterPro IPR000489:IPR006390:IPR011005; KEGG: krh:KRH_19260 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; PRIAM: dihydropteroate synthase; SPTR: D0WMD1 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase YP_003696631.1 COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR006157:IPR000550:IPR006156; KEGG: blo:BL1685 SulD; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; dihydroneopterin aldolase; SPTR: D0WMD2 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; TIGRFAM:2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: dihydroneopterin aldolase; FolB domain; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_003696632.1 KEGG: xce:Xcel_2983 hypothetical protein; SPTR: D1BZ92 uncharacterized protein; PFAM: protein of unknown function (DUF3180) YP_003696633.1 COGs: COG3402 conserved hypothetical protein; InterPro IPR005182; KEGG: rsa:RSal33209_3209 permease; PFAM: membrane-flanked domain; SPTR: A9WUQ5 Permease; PFAM: Bacterial membrane flanked domain YP_003696634.1 COGs: COG3428 membrane protein; InterPro IPR005182; KEGG: bcv:Bcav_0708 membrane-flanked domain protein; PFAM: membrane-flanked domain; SPTR: C5BYL1 membrane-flanked domain protein; PFAM: Bacterial membrane flanked domain YP_003696635.1 COGs: COG5495 conserved hypothetical protein; InterPro IPR019665:IPR018931:IPR016040; KEGG: bcv:Bcav_0716 pantoate/beta-alanine ligase; PFAM: oxidoreductase/dehydrogenase, Rossmann-like domain; Domain of unknown function DUF2520; SPTR: C5BYL9 Pantoate/beta-alanine ligase; PFAM: Domain of unknown function (DUF2520); Rossmann-like domain YP_003696636.1 COGs: COG0414 Panthothenate synthetase; InterPro IPR003721:IPR014729:IPR004821; KEGG: ace:Acel_0211 pantothenate synthetase; PFAM: Pantoate-beta-alanine ligase; SPTR: D0WLV2 Pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain YP_003696637.1 COGs: COG0853 aspartate 1-decarboxylase; InterPro IPR003190:IPR009010; KEGG: jde:Jden_2095 aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; PRIAM: aspartate 1-decarboxylase; SPTR: D0WLV3 aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase YP_003696638.1 COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR004365:IPR004364:IPR012340:IPR006195:IPR 002313:IPR016027:IPR018149; KEGG: jde:Jden_2092 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: lysine--tRNA ligase; SPTR: D0WLW0 lysine--tRNA ligase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_003696639.1 COGs: COG0554 glycerol kinase; InterPro IPR018484:IPR018485:IPR005999:IPR018483; KEGG: pac:PPA2304 glycerol kinase 2; PFAM: carbohydrate kinase, FGGY-like; SPTR: C0VYK7 glycerol kinase 2; TIGRFAM: glycerol kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase YP_003696640.1 COGs: COG0580 glycerol uptake facilitator and related permease (Major Intrinsic protein Family); InterPro IPR000425; KEGG: jde:Jden_0486 major intrinsic protein; PFAM: major intrinsic protein; SPTR: C2KN37 MIP family major intrinsic protein channel protein; PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins YP_003696641.1 COGs: COG0572 Uridine kinase; KEGG: bcv:Bcav_3297 ATP-binding protein; SPTR: C5C1D0 ATP-binding protein YP_003696642.1 COGs: COG0247 Fe-S oxidoreductase; InterProIPR001450:IPR004017:IPR012285:IPR017896:IPR 017753:IPR009051:IPR017900; KEGG: pac:PPA2248 sn-glycerol-3-phosphate dehydrogenase subunit C; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C2BV29 sn-glycerol-3-phosphate dehydrogenase subunit C; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; PFAM: Cysteine-rich domain; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit YP_003696643.1 COGs: COG3075 Anaerobic glycerol-3-phosphate dehydrogenase; InterPro IPR003953:IPR009158; KEGG: pac:PPA2249 anaerobic glycerol-3-phosphate dehydrogenase subunit B; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PRIAM: glycerol-3-phosphate dehydrogenase; SPTR: D0YR90 glycerol-3-phosphate dehydrogenase, anaerobic subunit beta; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic subunit beta; PFAM: FAD binding domain; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic subunit beta YP_003696644.1 COGs: COG0578 glycerol-3-phosphate dehydrogenase; InterPro IPR006076:IPR007419:IPR017752:IPR000447; KEGG: pac:PPA2250 anaerobic glycerol-3-phosphate dehydrogenase subunit A; PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; SPTR: D0YR89 glycerol-3-phosphate dehydrogenase, anaerobic, subunit alpha; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, subunit alpha; PFAM: BFD-like [2Fe-2S] binding domain; FAD dependent oxidoreductase; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, subunit alpha YP_003696645.1 COGs: COG2390 transcriptional regulator contains sigma factor-related N-terminal domain; InterPro IPR007324:IPR009057; KEGG: bcv:Bcav_3288 DeoR family transcriptional regulator; PFAM: sugar-binding domain protein; SPTR: D0YR88 Sugar-binding family transcriptional regulator; PFAM: Sigma-70, region 4; sugar-binding domain YP_003696646.1 COGs: COG1194 A/G-specific DNA glycosylase; InterProIPR003265:IPR003583:IPR003651:IPR011257:IPR 004036; KEGG: bcv:Bcav_3282 HhH-GPD family protein; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein; Helix-hairpin-helix DNA-binding class 1; SPTR: D0WM02 A/G-specific adenine glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase YP_003696647.1 InterPro IPR001647:IPR012287:IPR009057; KEGG: cur:cur_0019 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C5VFG3 TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_003696648.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR016196; KEGG: cgt:cgR_2515 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: A4QH10 uncharacterized protein; PFAM: Major Facilitator Superfamily YP_003696649.1 InterPro IPR011701:IPR016196:IPR005829; KEGG: smt:Smal_1070 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: D0XPS3 Major facilitator superfamily MFS_1; PFAM: Sugar (and other) transporter; Major Facilitator Superfamily YP_003696650.1 COGs: COG4637 ATPase; KEGG: aav:Aave_2264 hypothetical protein; SPTR: B5W7M4 SMC domain protein YP_003696651.1 KEGG: ajs:Ajs_4079 hypothetical protein; SPTR: B5W7M3 uncharacterized protein YP_003696652.1 KEGG: nca:Noca_0468 hypothetical protein; SPTR: D0WMD9 uncharacterized protein (Fragment) YP_003696653.1 COGs: COG1066 ATP-dependent serine protease; InterPro IPR003593:IPR004504:IPR020568; KEGG: bcv:Bcav_3279 DNA repair protein RadA; SMART: ATPase AAA; SPTR: C0W0Q9 DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA YP_003696654.1 COGs: COG0569 K+ transporters NAD-binding component; InterPro IPR003148:IPR006037:IPR016040; KEGG: bcv:Bcav_3270 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: D0WME1 Trk-type K+ transporter, NAD-binding component; PFAM: TrkA-N domain; TrkA-C domain YP_003696655.1 COGs: COG0168 Trk-type K+ transporters membrane components; InterPro IPR003445; KEGG: bcv:Bcav_3269 H(+)-transporting two-sector ATPase; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: C5C1A2 H(+)-transporting two-sector ATPase; PFAM: Cation transporter YP_003696656.1 InterPro IPR010093:IPR009061:IPR000843; KEGG: bcv:Bcav_3263 excision promoter, Xis; SPTR: D0WME4 excisionase; TIGRFAM: excisionase; TIGRFAM: DNA binding domain, excisionase family YP_003696657.1 InterPro IPR000835:IPR011991; KEGG: bcv:Bcav_3256 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: D1BBA8 transcriptional regulator, MarR family; PFAM: MarR family YP_003696658.1 COGs: COG0406 fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: tcu:Tcur_4432 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SPTR: D0WME6 phosphoglycerate mutase family protein; PFAM: phosphoglycerate mutase family YP_003696659.1 KEGG: xce:Xcel_0448 hypothetical protein; SPTR: D0WMF2 membrane protein YP_003696660.1 COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR000537:IPR004657; KEGG: kra:Krad_0635 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: A7BBS9 uncharacterized protein; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_003696661.1 COGs: COG0318 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: bcv:Bcav_3247 O-succinylbenzoic acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: D0WMF4 O-succinylbenzoate--CoA ligase; PFAM: AMP-binding enzyme YP_003696662.1 COGs: COG0447 dihydroxynaphthoic acid synthase; InterPro IPR001753:IPR010198:IPR018376; KEGG: xce:Xcel_0455 naphthoate synthase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: C0W0R8 Naphthoate synthase; TIGRFAM: naphthoate synthase; PFAM: enoyl-CoA hydratase/isomerase family; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase) YP_003696663.1 InterPro IPR013216; KEGG: bcv:Bcav_2129 methyltransferase type 12; PFAM: methyltransferase type 11; SPTR: C4DS37 methyltransferase family protein; PFAM: thiopurine S-methyltransferase (TPMT) YP_003696664.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: nca:Noca_0509 O-succinylbenzoate synthase; PFAM: mandelate racemase/muconate lactonizing protein; SPTR: A1SE16 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; PFAM: mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase YP_003696665.1 COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; InterPro IPR012001; KEGG: pac:PPA0903 menaquinone biosynthesis protein; PFAM: thiamine pyrophosphate protein TPP binding domain protein; PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase; SPTR: Q6A9B0 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase; PFAM: thiamine pyrophosphate enzyme, N-terminal TPP binding domain; thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase YP_003696666.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478:IPR001254:IPR009003:IPR001940; KEGG: bcv:Bcav_3234 2-alkenal reductase; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: C5C0T2 2-alkenal reductase; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF) YP_003696667.1 COGs: COG1169 Isochorismate synthase; InterPro IPR015890:IPR005801:IPR004561; KEGG: bcv:Bcav_3233 isochorismate synthase; PFAM: chorismate binding-like; SPTR: C5C0T1 Isochorismate synthase; TIGRFAM: isochorismate synthase; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases YP_003696668.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR004033; KEGG: bcv:Bcav_3232 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: D1BBC6 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase /demethylmenaquinone methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases YP_003696669.1 COGs: COG0644 dehydrogenase (flavoprotein); InterPro IPR006076:IPR011777:IPR003042; KEGG: bcv:Bcav_3230 geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; SPTR: D0WMG0 monooxygenase, FAD-binding; TIGRFAM: geranylgeranyl reductase; manually curated; PFAM: FAD binding domain; TIGRFAM: geranylgeranyl reductase family YP_003696670.1 COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); InterPro IPR000440; KEGG: bcv:Bcav_3229 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; SPTR: D0WMG1 NADH dehydrogenase I, subunit alpha; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_003696671.1 COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; InterPro IPR006137:IPR006138; KEGG: sgr:SGR_2983 NADH dehydrogenase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: A7BBW8 uncharacterized protein; TIGRFAM: NADH-quinone oxidoreductase, subunit beta; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase subunit beta YP_003696672.1 COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; InterPro IPR001268:IPR010218; KEGG: sco:SCO4564 NADH dehydrogenase subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: D0WMG3 NADH dehydrogenase I, C subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C YP_003696673.1 COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; InterPro IPR001135:IPR010219:IPR014029; KEGG: bcv:Bcav_3226 NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; PRIAM: NADH dehydrogenase (quinone); SPTR: D0WMG4 NADH dehydrogenase, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NADH dehydrogenase I, D subunit YP_003696674.1 COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR005113:IPR012336; KEGG: xce:Xcel_0473 NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: D0WMG5 NADH dehydrogenase I, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit YP_003696675.1 COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR011538:IPR019554:IPR019575:IPR011537:IPR 001949; KEGG: bcv:Bcav_3224 NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: D0WMG6 NADH oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: NADH-quinone oxidoreductase, F subunit YP_003696676.1 COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterProIPR001041:IPR019574:IPR006656:IPR010228:IPR 000283; KEGG: xce:Xcel_0475 NADH-quinone oxidoreductase, chain G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase; SPTR: D0WMG7 NADH dehydrogenase, G subunit; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Molybdopterin oxidoreductase; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; TIGRFAM: NADH-quinone oxidoreductase, chain G YP_003696677.1 COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR001694:IPR018086; KEGG: bcv:Bcav_3222 NADH dehydrogenase (quinone); PFAM: respiratory-chain NADH dehydrogenase subunit 1; SPTR: D0WMG8 NADH dehydrogenase I, H subunit; PFAM: NADH dehydrogenase YP_003696678.1 COGs: COG1143 formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterProIPR001450:IPR017896:IPR010226:IPR009051:IPR 017900; KEGG: bcv:Bcav_3221 NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: D0WMG9 NADH-quinone oxidoreductase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I YP_003696679.1 COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: bcv:Bcav_3220 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; SPTR: D0WMH0 NADH dehydrogenase; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_003696680.1 COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); InterPro IPR001133; KEGG: sro:Sros_0594 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: D0WMH1 NADH dehydrogenase I, K subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YP_003696681.1 COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterProIPR001516:IPR001750:IPR003945:IPR003916:IPR 018393; KEGG: bcv:Bcav_3218 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: D0WMH2 NADH-quinone oxidoreductase, L subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; manually curated; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L YP_003696682.1 COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR001750:IPR010227:IPR003918; KEGG: bcv:Bcav_3217 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: D0WMH3 NADH-quinone oxidoreductase, M subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M YP_003696683.1 COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); InterPro IPR001750:IPR010096; KEGG: bcv:Bcav_3216 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: D0WMH4 NADH-quinone oxidoreductase, N subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N YP_003696684.1 COGs: COG0142 geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR008949; KEGG: bcv:Bcav_3215 polyprenyl synthetase; PFAM: polyprenyl synthetase; SPTR: D0WMH5 trans-hexaprenyltranstransferase; PFAM: polyprenyl synthetase YP_003696685.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); InterProIPR011115:IPR011130:IPR001650:IPR011116:IPR 014018:IPR000185; KEGG: bcv:Bcav_1246 preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; helicase; SecA Wing and Scaffold; SPTR: D0WRM7 Preprotein translocase, Secsubunit alpha; TIGRFAM: preprotein translocase, Secsubunit alpha; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, Secsubunit alpha YP_003696686.1 COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR002792:IPR010280:IPR016027; KEGG: xce:Xcel_1914 deoxyribonuclease/rho motif-related TRAM; PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; SPTR: D0WQH6 23S rRNA methyltransferase/RumA; PFAM: tRNA (uracil-5-)-methyltransferase; TRAM domain YP_003696687.1 COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: xce:Xcel_1526 PilT protein domain protein; PFAM: PilT protein domain protein; SPTR: D1BS64 PilT protein domain protein; PFAM: PIN domain YP_003696688.1 KEGG: mtc:MT2002 hypothetical protein; SPTR: Q8VJT9 uncharacterized protein YP_003696689.1 KEGG: bcv:Bcav_1253 hypothetical protein; SPTR: D0WRM8 uncharacterized protein YP_003696690.1 InterPro IPR018392:IPR002482; KEGG: tte:TTE1337 LysM repeat-containing protein; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: Q8RA91 LysM-repeat proteins and domains; PFAM: LysM domain YP_003696691.1 KEGG: art:Arth_2703 hypothetical protein; SPTR: A0JYG2 uncharacterized protein YP_003696692.1 InterPro IPR000551:IPR010093:IPR009061; KEGG: jde:Jden_1818 excisionase; PFAM: regulatory protein MerR; SPTR: D0WRN3 DNA binding domain, excisionase family protein; TIGRFAM: excisionase; TIGRFAM: DNA binding domain, excisionase family YP_003696693.1 InterPro IPR013974; KEGG: bfa:Bfae_20550 SAF domain-containing protein; PFAM: SAF domain protein; SPTR: C7ME55 SAF domain-containing protein; PFAM: SAF domain YP_003696694.1 KEGG: bcv:Bcav_1258 ATPase involved in chromosome partitioning; SPTR: C2BSE5 ATPase involved in chromosome partitioning family protein YP_003696695.1 KEGG: bcv:Bcav_1260 hypothetical protein; SPTR: C5C1Q2 uncharacterized protein YP_003696696.1 COGs: COG0419 ATPase involved in DNA repair; InterPro IPR001412:IPR003395; KEGG: cms:CMS_2145 nuclease; PFAM: SMC domain protein; SPTR: D0WRP2 nuclease sbcCD subunit C; TIGRFAM: DNA sulfur modification protein DndD; exonuclease SbcC YP_003696697.1 COGs: COG0420 DNA repair exonuclease; InterPro IPR004843:IPR004593; KEGG: cmi:CMM_0677 dsDNA exonuclease subunit; PFAM: metallophosphoesterase; SPTR: D1BIQ6 exodeoxyribonuclease I subunit D; TIGRFAM: nuclease SbcCD, D subunit; PFAM: Calcineurin-like phosphoesterase; type 5 capsule protein repressor C terminal; TIGRFAM: exonuclease SbcD YP_003696698.1 KEGG: cdi:DIP2121 hypothetical protein; SPTR: D0WPQ4 PAS/PAC domain protein; TIGRFAM: PAS domain S-box YP_003696699.1 InterPro IPR010860; KEGG: pac:PPA2108 cAMP factor; PFAM: CAMP factor family protein; SPTR: D0YTE8 Camp3; PFAM: CAMP factor (Cfa) YP_003696700.1 KEGG: kse:Ksed_18100 hypothetical protein; SPTR: C7NJC7 uncharacterized protein YP_003696701.1 KEGG: mpa:MAP0512c hypothetical protein; SPTR: Q743S9 uncharacterized protein YP_003696702.1 COGs: COG1162 GTPase; InterPro IPR010914:IPR004881; KEGG: jde:Jden_1813 GTPase EngC; PFAM: GTPase EngC; SPTR: C0W8L7 Possible GTP-binding protein; PFAM: protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A YP_003696703.1 COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; InterPro IPR001986:IPR006264:IPR013792:IPR016228; KEGG: bfa:Bfae_19470 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: C7MDV5 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase YP_003696704.1 KEGG: bcv:Bcav_1264 DoxX family protein; SPTR: D0WRQ0 DoxX family protein YP_003696705.1 COGs: COG2186 transcriptional regulators; InterPro IPR011991:IPR000524:IPR011711; KEGG: bcv:Bcav_3776 regulatory protein GntR HTH; PFAM: regulatory protein GntR HTH; GntR family transcriptional regulator; SMART: regulatory protein GntR HTH; SPTR: D0WKM6 GntR family transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_003696706.1 COGs: COG1940 transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: bln:Blon_0644 ROK family protein; PFAM: ROK family protein; SPTR: A7BBZ4 uncharacterized protein; PFAM: ROK family YP_003696707.1 COGs: COG3010 N-acetylmannosamine-6-phosphate epimerase; InterPro IPR013785:IPR007260:IPR011060; KEGG: bln:Blon_2402 N-acetylmannosamine-6-phosphate 2-epimerase; PFAM: N-acetylmannosamine-6-phosphate epimerase; PRIAM: N-acylglucosamine-6-phosphate 2-epimerase; SPTR: A7BBZ5 uncharacterized protein; PFAM: N-acetylmannosamine-6-phosphate epimerase YP_003696708.1 COGs: COG0363 6-phosphogluconolactonase/glucosamine-6-phosphate isomerase/deaminase; InterPro IPR018321:IPR006148; KEGG: xce:Xcel_1049 glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; SPTR: D0WNV6 glucosamine-6-phosphate deaminase; PFAM: glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase YP_003696709.1 COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR006680; KEGG: xce:Xcel_2442 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: D0WNV7 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_003696710.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR000838:IPR007627:IPR013249:IPR014293:IPR 014284:IPR013325:IPR013324; KEGG: bcv:Bcav_1265 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: D0WRQ2 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, TIGR02947 family YP_003696711.1 InterPro IPR014295; KEGG: cdi:DIP0710 anti sigma factor; SPTR: D0WRQ3 anti-sigma factor RshA; TIGRFAM: anti-sigma factor; TIGRFAM: anti-sigma factor, TIGR02949 family YP_003696712.1 COGs: COG4877 conserved hypothetical protein; KEGG: ami:Amir_1210 hypothetical protein; SPTR: C6WRB0 uncharacterized protein YP_003696713.1 COGs: COG0330 membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: cgb:cg3138 membrane protease subunit stomatin/prohibitin-like protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Q8NLV0 membrane protease subunits, stomatin/prohibitin homologs; PFAM: SPFH domain / Band 7 family YP_003696714.1 KEGG: cbb:CLD_3775 hypothetical protein; SPTR: C0W061 membrane protein YP_003696715.1 KEGG: pac:PPA1037 hypothetical protein; SPTR: C0W060 uncharacterized protein YP_003696716.1 KEGG: cbt:CLH_1579 hypothetical protein; SPTR: D0YSP8 membrane protein YP_003696717.1 InterPro IPR002716; KEGG: afo:Afer_1620 PilT protein domain protein; PFAM: PilT protein domain protein; SPTR: C7M0N1 PilT protein domain protein; PFAM: PIN domain YP_003696718.1 InterPro IPR006442; KEGG: mbt:JTY_1986 hypothetical protein, antitoxin; SPTR: C0U553 Prevent-host-death family protein; TIGRFAM: prevent-host-death family protein; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein YP_003696719.1 InterPro IPR013831:IPR013830; KEGG: xce:Xcel_2490 acyl-CoA thioesterase I precursor; SPTR: D0WRR1 lipolytic enzyme, G-D-S-L YP_003696720.1 COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR001078:IPR001017:IPR005475:IPR011603; KEGG: bcv:Bcav_1274 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: transketolase central region; dehydrogenase E1 component; catalytic domain of components of various dehydrogenase complexes; SPTR: D0WRR3 Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); dehydrogenase E1 component; transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component YP_003696721.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR002550:IPR005170; KEGG: xce:Xcel_2484 protein of unknown function DUF21; PFAM: protein of unknown function DUF21; hypothetical protein; transporter-associated region; SPTR: C0W8N2 HCC family HlyC/CorC transporter; PFAM: CBS domain; Domain of unknown function DUF21; transporter associated domain YP_003696722.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR002550; KEGG: xce:Xcel_2483 protein of unknown function DUF21; PFAM: protein of unknown function DUF21; hypothetical protein; SMART: hypothetical protein; SPTR: D1BCR2 CBS domain-containing protein; PFAM: CBS domain; Domain of unknown function DUF21 YP_003696723.1 COGs: COG0739 membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR011055; KEGG: mlu:Mlut_00220 metalloendopeptidase-like membrane protein; PFAM: peptidase M23; SPTR: C0W8N4 uncharacterized protein; PFAM: peptidase family M23 YP_003696724.1 COGs: COG0584 glycerophosphoryl diester phosphodiesterase; InterPro IPR017946:IPR004129; KEGG: bcv:Bcav_2653 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: D0WRR5 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase family YP_003696725.1 COGs: COG0018 Arginyl-tRNA synthetase; InterProIPR005148:IPR014729:IPR001412:IPR015945:IPR 008909:IPR001278:IPR009080; KEGG: kra:Krad_1250 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; DALR anticodon binding domain protein; PRIAM: Arginine--tRNA ligase; SPTR: D0WRR6 Arginine--tRNA ligase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase YP_003696726.1 COGs: COG0083 homoserine kinase; InterPro IPR014721:IPR020568; KEGG: cai:Caci_1201 homoserine kinase; SPTR: D0WRS3 homoserine kinase YP_003696727.1 KEGG: shi:Shel_02770 ATPase; SPTR: D0WFW9 uncharacterized protein YP_003696728.1 COGs: COG1158 transcription termination factor; InterPro IPR011113:IPR000194:IPR004665:IPR003593; KEGG: xce:Xcel_2462 transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; SMART: AAA ATPase; SPTR: D0WRS5 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho YP_003696729.1 COGs: COG0254 ribosomal protein L31; InterPro IPR002150; KEGG: xce:Xcel_2460 ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: C0W8Q2 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; manually curated; PFAM: ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_003696730.1 COGs: COG0216 protein chain release factor A; InterPro IPR000352:IPR005139:IPR004373; KEGG: xce:Xcel_2459 peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; SPTR: D0WRS7 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1 YP_003696731.1 COGs: COG2890 methylase of polypeptide chain release factors; InterPro IPR002052:IPR007848:IPR004556:IPR019874; KEGG: bln:Blon_0576 modification methylase, HemK family; PFAM: methyltransferase small; SPTR: D0WRS8 protein-(glutamine-N5) methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific YP_003696732.1 COGs: COG0009 translation factor (SUA5); InterPro IPR017945:IPR006070:IPR004388; KEGG: art:Arth_2617 translation factor SUA5; PFAM: SUA5/yciO/yrdC domain; SPTR: C1RKE7 translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_003696733.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018480:IPR018481; KEGG: jde:Jden_1782 glycosyl transferase family 4; PFAM: glycosyl transferase, family 4, conserved region; SPTR: D0WRT0 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; PFAM: glycosyl transferase family 4 YP_003696734.1 KEGG: pct:PC1_2686 sulfate transporter; SPTR: Q9I537 uncharacterized protein YP_003696735.1 COGs: COG0356 F0F1-type ATP synthase subunit a; InterPro IPR000568; KEGG: xce:Xcel_2454 ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; SPTR: D0WRT2 ATP synthase F0 subunit alpha; TIGRFAM: ATP synthase F0 subunit alpha; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_003696736.1 InterPro IPR002379:IPR020537:IPR000454:IPR005953; KEGG: cms:CMS_1929 ATP synthase C chain; PFAM: H+transporting two-sector ATPase C subunit; SPTR: D0WRT3 ATP synthase F0 subunit chi; TIGRFAM: ATP synthase F0 subunit chi; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c YP_003696737.1 COGs: COG0711 F0F1-type ATP synthase subunit b; InterPro IPR002146:IPR005864; KEGG: bcv:Bcav_1303 ATP synthase F0 subunit beta; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: D0WRT4 ATP synthase F0 B subunit; TIGRFAM: ATP synthase F0 subunit beta; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b YP_003696738.1 COGs: COG0712 F0F1-type ATP synthase subunit delta (mitochondrial oligomycin sensitivity protein); InterPro IPR020781:IPR000711; KEGG: bcv:Bcav_1304 ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; SPTR: D0WRT5 H+-ATPase subunit delta; TIGRFAM: ATP synthase F1 subunit delta; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 subunit delta YP_003696739.1 COGs: COG0056 F0F1-type ATP synthase alpha subunit; InterProIPR020003:IPR004100:IPR000194:IPR000793:IPR 005294:IPR018118; KEGG: xce:Xcel_2450 ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SPTR: D0WRT6 ATP synthase F1 subunit alpha; TIGRFAM: ATP synthase F1 alpha subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta chain, C terminal domain; TIGRFAM: proton translocating ATP synthase, F1 subunit alpha YP_003696740.1 COGs: COG0224 F0F1-type ATP synthase gamma subunit; InterPro IPR000131; KEGG: jde:Jden_1775 ATP synthase F1 gamma subunit; PFAM: H+transporting two-sector ATPase subunit gamma; SPTR: D0WRT7 ATP synthase F1 subunit gamma; TIGRFAM: ATP synthase F1 subunit gamma; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 subunit gamma YP_003696741.1 COGs: COG0055 F0F1-type ATP synthase beta subunit; InterProIPR020003:IPR004100:IPR000194:IPR000793:IPR 005722:IPR003593:IPR018118; KEGG: xce:Xcel_2448 ATP synthase F1 beta subunit; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA; SPTR: D0WRT8 ATP synthase F1 subunit beta; TIGRFAM: ATP synthase F1 subunit beta; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta chain, C terminal domain; TIGRFAM: ATP synthase, F1 subunit beta YP_003696742.1 COGs: COG0355 F0F1-type ATP synthase subunit epsilon (mitochondrial subunit delta); InterPro IPR020546; KEGG: bcv:Bcav_1308 H+transporting two-sector ATPase delta/subunit epsilon; PFAM: ATPase, F1 complex, delta/subunit epsilon-like; SPTR: C5C1U9 H+transporting two-sector ATPase delta/subunit epsilon; PFAM: ATP synthase, delta/Epsilon chain, beta-sandwich domain YP_003696743.1 InterPro IPR019675; KEGG: kra:Krad_1272 hypothetical protein; PFAM: protein of unknown function DUF2550; SPTR: A6W7H1 uncharacterized protein; PFAM: protein of unknown function (DUF2550) YP_003696744.1 COGs: COG1637 nuclease of the RecB family; InterPro IPR002793; KEGG: ach:Achl_2332 protein of unknown function DUF91; PFAM: protein of unknown function DUF91; SPTR: D0WRU1 Nuclease of the RecB family protein; PFAM: protein of unknown function DUF91 YP_003696745.1 KEGG: cai:Caci_1238 hypothetical protein; SPTR: D0WRU2 ATP/GTP-binding protein, doubtful CDS YP_003696746.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639:IPR000073; KEGG: bcv:Bcav_1326 alpha/beta hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: D0WRU3 SHCHC synthase; PFAM: alpha/beta hydrolase fold YP_003696747.1 KEGG: xce:Xcel_2425 hypothetical protein; SPTR: D0WRU4 cellulose-binding protein; PFAM: DivIVA protein YP_003696748.1 KEGG: bcv:Bcav_1331 hypothetical protein; SPTR: D0WRU5 uncharacterized protein (Fragment) YP_003696749.1 KEGG: bcv:Bcav_1332 hypothetical protein; SPTR: D0WRU7 uncharacterized protein YP_003696750.1 COGs: COG3118 thioredoxin domain-containing protein; InterPro IPR012335:IPR012336; KEGG: bcv:Bcav_1333 thioredoxin domain protein; SPTR: D0WRU8 thioredoxin-related protein; PFAM: thioredoxin YP_003696751.1 COGs: COG0366 glycosidase; InterPro IPR013781:IPR006047:IPR006589:IPR017853; KEGG: cdi:DIP0532 amylase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Q6NJ80 amylase; PFAM: alpha amylase, catalytic domain YP_003696752.1 COGs: COG1609 transcriptional regulators; InterPro IPR000843:IPR001761:IPR010982; KEGG: sro:Sros_3351 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; SPTR: D0WRV0 HTH-type transcriptional regulator MalR; PFAM: Bacterial regulatory proteins, lacI family; family YP_003696753.1 COGs: COG2182 maltose-binding periplasmic protein/domains; InterPro IPR006060:IPR006059; KEGG: bcv:Bcav_1781 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; SPTR: C0W247 Periplasmic maltose-binding protein; PFAM: Bacterial extracellular solute-binding protein YP_003696754.1 COGs: COG1175 ABC-type sugar transporters permease components; InterPro IPR000515; KEGG: bcv:Bcav_1782 fructose-bisphosphate aldolase; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: C0W248 maltose ABC superfamily ATP binding cassette transporter membrane protein MalF; PFAM: Binding-protein-dependent transport system inner membrane component YP_003696755.1 COGs: COG3833 ABC-type maltose transporters permease component; InterPro IPR000515; KEGG: bcv:Bcav_1783 binding-protein-dependent transporters inner membrane component; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: C0W249 maltose/maltodextrin ABC superfamily ATP binding cassette transporter membrane protein; PFAM: Binding-protein-dependent transporter inner membrane component YP_003696756.1 COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: cur:cur_0127 oxidoreductase; PFAM: NADPH-dependent FMN reductase; SPTR: C6MAM3 Flavin reductase; PFAM: NADPH-dependent FMN reductase YP_003696757.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR013783:IPR013781:IPR013780:IPR004193:IPR 006047:IPR006048:IPR006407:IPR006589:IPR017853:IPR014756; KEGG: bcv:Bcav_1334 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: D0WRV2 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase, C-terminal all-beta domain; alpha amylase, catalytic domain; carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase YP_003696758.1 COGs: COG3281 Uncharacterized protein probably involved in trehalose biosynthesis; InterPro IPR002160:IPR002575:IPR011009; KEGG: cmi:CMM_2112 phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: D0WRV4 Pep2 protein; PFAM: phosphotransferase enzyme family YP_003696759.1 COGs: COG0366 glycosidase; InterProIPR013781:IPR006047:IPR012810:IPR006589:IPR 017853; KEGG: xce:Xcel_2418 trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: D1BCY4 Trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase, catalytic domain; TIGRFAM: trehalose synthase YP_003696760.1 COGs: COG0366 glycosidase; InterPro IPR013781:IPR006047:IPR006589:IPR017853; KEGG: bcv:Bcav_1337 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: D0WRV5 alpha-amylase family protein; PFAM: alpha amylase, catalytic domain; Domain of unknown function (DUF3416) YP_003696761.1 COGs: COG0350 methylated DNA-protein cysteine methyltransferase; InterPro IPR011991:IPR014048; KEGG: cpc:Cpar_1288 methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: B3QP38 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_003696762.1 COGs: COG0058 glucan phosphorylase; InterPro IPR000811:IPR011833; KEGG: pac:PPA0081 carbohydrate phosphorylase; PFAM: glycosyl transferase family 35; SPTR: C0VYI8 phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: carbohydrate phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases YP_003696763.1 COGs: COG0180 tryptophanyl-tRNA synthetase; InterPro IPR014729:IPR001412:IPR002306:IPR002305; KEGG: pac:PPA1327 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; SPTR: C0W021 tryptophan--tRNA ligase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase YP_003696764.1 COGs: COG1523 type II secretory pathway pullulanase PulA and related glycosidase; InterProIPR013783:IPR013781:IPR004193:IPR006047:IPR 011837:IPR006589:IPR017853:IPR014756; KEGG: bcv:Bcav_1345 glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: D0WRW1 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: alpha amylase, catalytic domain; carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: glycogen debranching enzyme GlgX YP_003696765.1 COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding; InterPro IPR000086:IPR020084:IPR015376:IPR015797; KEGG: nca:Noca_1514 NUDIX hydrolase; PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; SPTR: D1BAV9 Zn-finger containing NTP pyrophosphohydrolase; PFAM: NUDIX domain YP_003696766.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR002121:IPR014016:IPR014017:IPR000212; KEGG: bcv:Bcav_2897 UvrD/REP helicase; PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; SPTR: D0WRX3 ATP-dependent DNA helicase II; PFAM: HRDC domain; UvrD/REP helicase YP_003696767.1 KEGG: bcv:Bcav_2892 hypothetical protein; SPTR: D0WRX4 UBA/THIF-type NAD/FAD binding fold protein YP_003696768.1 COGs: COG5282 conserved hypothetical protein; InterPro IPR018766; KEGG: bcv:Bcav_2890 hypothetical protein; PFAM: protein of unknown function DUF2342; SPTR: D0WRX5 uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Uncharacterised conserved protein (DUF2342); TIGRFAM: conserved hypothetical protein YP_003696769.1 COGs: COG3480 secreted protein containing a PDZ domain; InterPro IPR020568; KEGG: cms:CMS_1888 hypothetical protein; SPTR: D0WRX7 Pdz/dhr/glgf protein; PFAM: Lon protease (S16) C-terminal proteolytic domain YP_003696770.1 KEGG: jde:Jden_0724 hypothetical protein; SPTR: C7R1S0 uncharacterized protein YP_003696771.1 COGs: COG1615 conserved hypothetical protein; InterPro IPR005372; KEGG: bcv:Bcav_2885 protein of unknown function UPF0182; PFAM: protein of unknown function UPF0182; SPTR: D0WRY1 integral membrane protein; PFAM: Uncharacterised protein family (UPF0182) YP_003696772.1 KEGG: ttj:TTHA0096 NADH-quinone oxidoreductase chain 13; SPTR: Q72GE0 NADH-quinone oxidoreductase chain M YP_003696773.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; InterPro IPR003439:IPR003593; KEGG: xce:Xcel_3322 ABC transporter related protein; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: D0WP13 ABC transporter ATP-binding protein YP_003696774.1 COGs: COG1725 transcriptional regulator; InterPro IPR011991:IPR000524; KEGG: kse:Ksed_02920 predicted transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: D0WP12 GntR family transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family YP_003696775.1 KEGG: kse:Ksed_00360 pyrimidine dimer DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase; SPTR: C7NIG2 Pyrimidine dimer DNA glycosylase /DNA-(Apurinic or apyrimidinic site) lyase YP_003696776.1 InterPro IPR011991:IPR005149; KEGG: art:Arth_0527 PadR family transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: C2KN54 PadR family transcriptional regulator; PFAM: transcriptional regulator PadR-like family YP_003696777.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: cai:Caci_7925 ABC transporter; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: D0YQR1 Lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter YP_003696778.1 InterPro IPR003838; KEGG: sro:Sros_4389 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: D0YQR0 efflux ABC transporter permease; PFAM: Predicted permease YP_003696779.1 COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; InterPro IPR002052; KEGG: pac:PPA0512 molybdopterin-guanine dinucleotide biosynthesis protein A; SPTR: C2BVS3 Molybdopterin-guanine dinucleotide biosynthesis protein YP_003696780.1 COGs: COG2808 transcriptional regulator; InterPro IPR007396; KEGG: bvi:Bcep1808_3517 negative transcriptional regulator; PFAM: negative transcriptional regulator; SPTR: C1WYZ0 transcriptional regulator, COG2808; PFAM: FMN-binding domain YP_003696781.1 COGs: COG0262 dihydrofolate reductase; InterPro IPR017925:IPR001796:IPR012259; KEGG: lxx:Lxx09920 dihydrofolate reductase; PFAM: dihydrofolate reductase region; PRIAM: dihydrofolate reductase; SPTR: D0WS26 dihydrofolate reductase; PFAM: dihydrofolate reductase YP_003696782.1 COGs: COG0207 Thymidylate synthase; InterPro IPR000398; KEGG: nfa:nfa50220 thymidylate synthase; PFAM: thymidylate synthase; PRIAM: Thymidylate synthase; SPTR: D0WS27 Thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase YP_003696783.1 InterPro IPR019639; KEGG: bcv:Bcav_2830 hypothetical protein; PFAM: protein of unknown function DUF2505; SPTR: D0WS28 uncharacterized protein; PFAM: protein of unknown function (DUF2505) YP_003696784.1 COGs: COG3920 Signal transduction histidine kinase; InterPro IPR003594:IPR005467:IPR013656:IPR011495; KEGG: bcv:Bcav_2829 signal transduction histidine kinase; PFAM: histidine kinase dimerisation/phosphoacceptor; hypothetical protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: D0WS29 Sensor histidine kinase; PFAM: histidine kinase; Signal transduction histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box YP_003696785.1 InterPro IPR003482; KEGG: kra:Krad_3795 transcription factor WhiB; PFAM: transcription factor WhiB; SPTR: A6WEL9 transcription factor WhiB; PFAM: transcription factor WhiB YP_003696786.1 InterPro IPR003838; KEGG: bcv:Bcav_2825 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: C5V906 ABC transporter integral membrane protein; PFAM: Predicted permease YP_003696787.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439; KEGG: blt:Balat_1147 ABC transporter ATP-binding protein; PFAM: ABC transporter; SPTR: C6AJB3 ABC transporter ATP-binding protein; PFAM: ABC transporter YP_003696788.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR011991:IPR000792:IPR001789:IPR011006:IPR 016032; KEGG: bcv:Bcav_2822 LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; SPTR: D0WS35 Two-component system response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003696789.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: bcv:Bcav_2821 histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SPTR: D0WS36 signal transduction histidine kinase; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003696790.1 COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterProIPR018239:IPR001357:IPR013839:IPR004150:IPR 004149:IPR000445:IPR001679:IPR013840:IPR010994:IPR016027; KEGG: bfa:Bfae_18930 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; zinc-finger NAD-dependent DNA ligase C4-type; helix-hairpin-helix motif; BRCT domain protein; SMART: NAD-dependent DNA ligase ; BRCT domain protein; SPTR: D0WS37 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase C4 zinc finger domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent YP_003696791.1 COGs: COG1502 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: xce:Xcel_1743 phospholipase D/transphosphatidylase; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; SPTR: D0WS38 Cardiolipin synthetase; PFAM: phospholipase D Active site motif YP_003696792.1 COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: bcv:Bcav_1383 glutamyl-tRNA(Gln) amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase C subunit; SPTR: C5C2F6 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit C YP_003696793.1 COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120:IPR020556:IPR004412; KEGG: jde:Jden_1714 glutamyl-tRNA(Gln) amidotransferase, subunit alpha; PFAM: amidase; SPTR: C2BRA5 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, subunit alpha; PFAM: amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, subunit alpha YP_003696794.1 COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); InterProIPR017958:IPR006075:IPR006107:IPR018027:IPR 004413:IPR003789; KEGG: bcv:Bcav_1385 glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB central domain protein; Asn/Gln amidotransferase; SPTR: A7B8Q7 uncharacterized protein; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase subunit beta; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit beta YP_003696795.1 COGs: COG0281 Malic enzyme; InterPro IPR016040:IPR015884:IPR012301:IPR012302; KEGG: nca:Noca_2034 malate dehydrogenase; PFAM: malic protein NAD-binding; malic protein domain protein; SPTR: D0WL78 NADP-dependent malic enzyme; PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain YP_003696796.1 KEGG: cdi:DIP0114 hypothetical protein; SPTR: Q6NKB9 membrane protein; PFAM: protein of unknown function (DUF2871) YP_003696797.1 COGs: COG3004 Na+/H+ antiporter; InterPro IPR004670; KEGG: art:Arth_0107 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; SPTR: A0JR38 Na(+)/H(+) antiporter nhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA YP_003696798.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: art:Arth_2657 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A7BAJ7 uncharacterized protein; PFAM: methyltransferase domain YP_003696799.1 COGs: COG2966 conserved hypothetical protein; InterPro IPR010619; KEGG: rmu:RMDY18_06380 hypothetical protein; PFAM: protein of unknown function DUF1212; SPTR: C0W2A9 uncharacterized protein; PFAM: protein of unknown function (DUF1212) YP_003696800.1 COGs: COG2985 permease; InterPro IPR006037:IPR006512:IPR016040; KEGG: car:cauri_1117 transporter protein; PFAM: YidE/YbjL duplication domain protein; TrkA-C domain protein; SPTR: C0W2B0 YidE/YbjL family protein; TIGRFAM: YidE/YbjL duplication; PFAM: Predicted Permease membrane Region; TrkA-C domain; TIGRFAM: YidE/YbjL duplication YP_003696801.1 COGs: COG1027 aspartate ammonia-lyase; InterProIPR020557:IPR000362:IPR003031:IPR018951:IPR 004708:IPR008948; KEGG: hsm:HSM_0765 aspartate ammonia-lyase; PFAM: fumarate lyase; Fumarase C-like; SPTR: B0USK4 aspartate ammonia-lyase; TIGRFAM: aspartate ammonia-lyase; PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: aspartate ammonia-lyase YP_003696802.1 COGs: COG1882 pyruvate-formate lyase; InterPro IPR001150:IPR004184:IPR005949; KEGG: car:cauri_2089 formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; PRIAM: formate C-acetyltransferase; SPTR: C0VY68 formate C-acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: glycine radical; pyruvate formate lyase; TIGRFAM: formate acetyltransferase 1 YP_003696803.1 COGs: COG1882 pyruvate-formate lyase; InterPro IPR019777:IPR001150; KEGG: car:cauri_2088 formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; SPTR: C0VY69 uncharacterized protein; PFAM: glycine radical YP_003696804.1 COGs: COG1180 pyruvate-formate lyase-activating enzyme; InterPro IPR001989:IPR007197:IPR012838; KEGG: jde:Jden_1397 pyruvate formate-lyase activating enzyme; PFAM: radical SAM protein; PRIAM: [formate-C-acetyltransferase]-activating enzyme; SPTR: C0VY70 [formate-C-acetyltransferase]-activating enzyme; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: radical SAM superfamily; TIGRFAM: pyruvate formate-lyase 1-activating enzyme YP_003696805.1 COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR001608:IPR011078; KEGG: eba:ebA1768 hypothetical protein; PFAM: alanine racemase; SPTR: D0WRH4 pyridoxal phosphate enzyme, YggS family; PFAM: alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_003696806.1 COGs: COG4581 Superfamily II RNA helicase; InterPro IPR014021:IPR001650:IPR011545:IPR014001; KEGG: nfa:nfa37840 helicase; PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; SPTR: D0WRH3 ATP-dependent helicase; PFAM: Domain of unknown function (DUF3516); Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_003696807.1 COGs: COG1609 transcriptional regulators; InterPro IPR000843:IPR001761:IPR010982; KEGG: pac:PPA2330 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; SPTR: D0YQM2 LacI family transcription regulator; PFAM: Bacterial regulatory proteins, lacI family; family YP_003696808.1 COGs: COG1904 glucuronate isomerase; InterPro IPR003766; KEGG: art:Arth_0502 glucuronate isomerase; PFAM: glucuronate isomerase; PRIAM: glucuronate isomerase; SPTR: D0YQL1 glucuronate isomerase; PFAM: glucuronate isomerase YP_003696809.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: xce:Xcel_0908 PfkB domain protein; PFAM: PfkB domain protein; SPTR: D0YQL2 carbohydrate kinase; PFAM: pfkB family carbohydrate kinase YP_003696810.1 COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR013785:IPR000887; KEGG: tau:Tola_0229 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; SPTR: D0YQL3 Khg/kdpg aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase YP_003696811.1 COGs: COG1312 D-mannonate dehydratase; InterPro IPR013022:IPR004628; KEGG: pac:PPA2327 mannonate dehydratase; PFAM: Mannonate dehydratase; PRIAM: Mannonate dehydratase; SPTR: D0YQL4 Mannonate dehydratase; TIGRFAM: mannonate dehydratase; PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase YP_003696812.1 COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase; InterProIPR016040:IPR013328:IPR013131:IPR013118:IPR 008927; KEGG: pac:PPA2328 D-mannonate oxidoreductase; PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; SPTR: D0YQL5 D-mannonate oxidoreductase; PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain YP_003696813.1 KEGG: ach:Achl_0779 oxidoreductase; SPTR: B8HC64 oxidoreductase YP_003696814.1 KEGG: mno:Mnod_6520 chromosome segregation ATPase-like protein; SPTR: B8IDC3 chromosome segregation ATPase-like protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696815.1 KEGG: xce:Xcel_2511 hypothetical protein; SPTR: C0W204 uncharacterized protein YP_003696816.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: xce:Xcel_2510 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A7BA83 uncharacterized protein; PFAM: ABC transporter YP_003696817.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease; InterPro IPR003838; KEGG: cmi:CMM_2031 ABC transporter permease; PFAM: protein of unknown function DUF214; SPTR: C0W202 ABC superfamily ATP binding cassette transporter permease; PFAM: Predicted permease YP_003696818.1 InterPro IPR020137; KEGG: jde:Jden_2460 hypothetical protein; SPTR: C1RLQ9 uncharacterized protein YP_003696819.1 InterPro IPR011761; KEGG: jde:Jden_0904 hypothetical protein; SPTR: D0WRH0 uncharacterized protein; PFAM: Prokaryotic glutathione synthetase, ATP-grasp domain YP_003696820.1 COGs: COG1949 oligoribonuclease (3'->5' exoribonuclease); InterPro IPR013520:IPR006055:IPR012337; KEGG: krh:KRH_14510 oligoribonuclease; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; SPTR: D0WRE7 oligoribonuclease; manually curated; PFAM: exonuclease YP_003696821.1 KEGG: bcv:Bcav_2645 transcriptional regulator, TetR family; SPTR: D0WRE6 ATP/GTP-binding protein; PFAM: Dynamin family YP_003696822.1 KEGG: bcv:Bcav_2644 ATP-binding membrane protein; SPTR: D0WRE5 ATP-binding membrane protein; PFAM: Elongation factor Tu GTP binding domain YP_003696823.1 InterPro IPR012340:IPR000424:IPR011344:IPR016027; KEGG: ach:Achl_2173 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: D0WRE4 Single-stranded DNA-binding protein 1; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_003696824.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR017871:IPR003439:IPR003593; KEGG: mlu:Mlut_09750 ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: D0WRE3 ABC transporter ATP-binding protein; PFAM: ABC transporter YP_003696825.1 KEGG: cbt:CLH_0659 lipoprotein; SPTR: C0VY11 uncharacterized protein YP_003696826.1 InterPro IPR010982; KEGG: cef:CE1210 transcription regulator; SPTR: Q8FQB1 transcription regulator YP_003696827.1 InterPro IPR002711:IPR003615; KEGG: cdi:DIP2153 bacteriophage holin protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: C2KNY6 Possible bacteriophage endonuclease; PFAM: HNH endonuclease YP_003696828.1 COGs: COG4932 outer membrane protein; InterPro IPR008454:IPR019931; KEGG: sjj:SPJ_0350 collagen-binding protein A; PFAM: Cna B domain protein; SPTR: C1CCC8 Collagen-binding protein A; TIGRFAM: LPXTG-motif cell wall anchor domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696829.1 KEGG: jde:Jden_1529 alpha amylase catalytic region; SPTR: C0W0B5 uncharacterized protein YP_003696830.1 KEGG: sfr:Sfri_3959 GCN5-related N-acetyltransferase; SPTR: D0YU50 uncharacterized protein YP_003696831.1 COGs: COG3600 phage-associated protein; KEGG: vei:Veis_1323 hypothetical protein; SPTR: D0YU49 phage-associated protein YP_003696832.1 InterPro IPR000086:IPR020084:IPR015797; KEGG: lhe:lhv_1697 hypothetical protein; PFAM: NUDIX hydrolase; SPTR: C7XIN6 NUDIX family hydrolase; PFAM: NUDIX domain YP_003696833.1 InterPro IPR007337; KEGG: lba:Lebu_0151 addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; SPTR: C7ND10 Addiction module antitoxin, RelB/DinJ family; TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family YP_003696834.1 COGs: COG4115 conserved hypothetical protein; InterPro IPR009614; KEGG: dhd:Dhaf_2026 addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; SPTR: C4G508 uncharacterized protein; TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family YP_003696835.1 COGs: COG1946 acyl-CoA thioesterase; InterPro IPR003703; KEGG: bcv:Bcav_2638 palmitoyl-CoA hydrolase; PFAM: acyl-CoA thioesterase; SPTR: D0WRE2 acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; TIGRFAM: acyl-CoA thioesterase II YP_003696836.1 COGs: COG1640 4-alpha-glucanotransferase; InterPro IPR013781:IPR003385:IPR017853; KEGG: bcv:Bcav_2633 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; PRIAM: 4-alpha-glucanotransferase; SPTR: D0WRE1 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: 4-alpha-glucanotransferase; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; 4-alpha-glucanotransferase YP_003696837.1 InterPro IPR001996; KEGG: cai:Caci_8113 phosphotransferase system PTS EIIB protein; SPTR: C7QIN6 phosphotransferase system PTS EIIB protein YP_003696838.1 COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: bfa:Bfae_09780 Na+/H+ dicarboxylate symporter; PFAM: sodium:dicarboxylate symporter; SPTR: C0VZC5 DAACS family dicarboxylate/amino acid:cation Na+ or H+ symporter; PFAM: Sodium:dicarboxylate symporter family YP_003696839.1 COGs: COG2116 formate/nitrite family of transporter; InterPro IPR000292; KEGG: jde:Jden_2227 formate/nitrite transporter; PFAM: formate/nitrite transporter; SPTR: C0VY37 FNT family formate-nitrite transporter; PFAM: formate/nitrite transporter; TIGRFAM: formate/nitrite transporter YP_003696840.1 COGs: COG0308 Aminopeptidase N; InterPro IPR014782:IPR012778; KEGG: bcv:Bcav_2630 aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; SPTR: D0WRD5 Aminopeptidase; TIGRFAM: aminopeptidase N; PFAM: Domain of unknown function (DUF3358); peptidase family M1; TIGRFAM: aminopeptidase N, Streptomyces lividans type YP_003696841.1 COGs: COG3590 metalloendopeptidase; InterPro IPR018497:IPR008753; KEGG: xce:Xcel_1104 neprilysin; PFAM: peptidase M13; peptidase M13, neprilysin-like; PRIAM: endothelin-converting enzyme 1; SPTR: D1BJV6 endothelin-converting enzyme; PFAM: peptidase family M13 YP_003696842.1 COGs: COG0698 ribose 5-phosphate isomerase RpiB; InterPro IPR003500:IPR011860; KEGG: bcv:Bcav_2620 ribose 5-phosphate isomerase; PFAM: ribose/galactose isomerase; SPTR: D1BJV4 ribose 5-phosphate isomerase; TIGRFAM: ribose 5-phosphate isomerase; sugar-phosphate isomerase, RpiB/LacA/LacB family; manually curated; PFAM: ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_003696843.1 COGs: COG1045 serine acetyltransferase; InterPro IPR018357:IPR001451:IPR005881:IPR011004; KEGG: mlu:Mlut_09440 serine O-acetyltransferase; SPTR: D0WRD0 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase, N-terminal; TIGRFAM: serine O-acetyltransferase YP_003696844.1 COGs: COG0031 Cysteine synthase; InterPro IPR001216:IPR001926:IPR005856:IPR005859; KEGG: xce:Xcel_1111 cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; SPTR: D0WRC9 Cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases YP_003696845.1 COGs: COG1739 conserved hypothetical protein; InterPro IPR020569:IPR001498:IPR015269:IPR020568; KEGG: cur:cur_1185 hypothetical protein; PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; SPTR: D0WRC8 IMPACT family member YigZ; PFAM: Uncharacterized protein family UPF0029; TIGRFAM: conserved hypothetical protein TIGR00257 YP_003696846.1 InterPro IPR002677; KEGG: cur:cur_0544 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: D0WRC7 ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_003696847.1 KEGG: kko:Kkor_1729 hypothetical protein; SPTR: C7RCZ9 uncharacterized protein YP_003696848.1 InterPro IPR011040; KEGG: cti:RALTA_A0551 conserved hypothetical protein, 4Fe-4S cluster binding motif; SPTR: A7BBY7 uncharacterized protein YP_003696849.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transporters permeases; InterPro IPR001626; KEGG: cdi:DIP0441 hypothetical protein; PFAM: ABC transporter; SPTR: C0W5N9 ABC superfamily ATP binding cassette transporter permease; PFAM: ABC 3 transport family YP_003696850.1 COGs: COG1121 ABC-type Mn/Zn transporters ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: stp:Strop_2035 ABC transporter related; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: C0W5P0 ABC superfamily ATP binding cassette transporter ABC protein; PFAM: ABC transporter YP_003696851.1 KEGG: cdi:DIP0439 hypothetical protein; SPTR: C0W5P1 uncharacterized protein YP_003696852.1 COGs: COG0803 ABC-type metal ion transporter periplasmic component/surface adhesin; InterPro IPR006129:IPR006128:IPR006127; KEGG: pac:PPA1501 periplasmic solute binding protein; PFAM: periplasmic solute binding protein; SPTR: C0W5P2 ABC superfamily ATP binding cassette transporter solute binding protein; PFAM: Periplasmic solute binding protein family YP_003696853.1 COGs: COG1966 carbon starvation protein predicted membrane protein; InterPro IPR003706; KEGG: krh:KRH_18870 carbon starvation protein; PFAM: carbon starvation protein CstA; SPTR: D0WP83 carbon starvation protein A; PFAM: carbon starvation protein CstA YP_003696854.1 InterPro IPR007423; KEGG: mlu:Mlut_08620 uncharacterized small protein; PFAM: protein of unknown function DUF466; SPTR: D0WP82 uncharacterized protein; PFAM: protein of unknown function (DUF466) YP_003696855.1 COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395:IPR018170:IPR020471; KEGG: krh:KRH_00260 2,5-diketo-D-gluconic acid reductase; PFAM: aldo/keto reductase; PRIAM: 2,5-didehydrogluconate reductase; SPTR: P06632 2,5-diketo-D-gluconic acid reductase A; PFAM: Aldo/keto reductase family YP_003696856.1 KEGG: sen:SACE_0448 hypothetical protein; SPTR: A4F6X2 uncharacterized protein YP_003696857.1 InterPro IPR011991:IPR001845; KEGG: cms:CMS_0559 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: B0RD80 ArsR-family transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family YP_003696858.1 COGs: COG1428 deoxynucleoside kinase; InterPro IPR002624; KEGG: cbt:CLH_1831 deoxyguanosIne kinase; PFAM: deoxynucleoside kinase; SPTR: A8U7A9 deoxynucleoside kinase family protein; PFAM: deoxynucleoside kinase YP_003696859.1 COGs: COG1275 Tellurite resistance protein and related permease; InterPro IPR004695; KEGG: krh:KRH_19610 TDT family transporter; PFAM: C4-dicarboxylate transporter/malic acid transporter; SPTR: B2GGJ2 TDT family transporter; manually curated; PFAM: C4-dicarboxylate transporter/malic acid transporter YP_003696860.1 COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR001453:IPR008284; KEGG: tfu:Tfu_0376 molybdopterin adenylyltransferase; PFAM: molybdopterin binding domain; SPTR: Q47T03 Molybdopterin adenylyltransferase; PFAM: Probable molybdopterin binding domain YP_003696861.1 COGs: COG1653 ABC-type sugar transporter periplasmic component; InterPro IPR006059; KEGG: pac:PPA0604 sugar binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: A7B9K4 uncharacterized protein; PFAM: Bacterial extracellular solute-binding protein YP_003696862.1 COGs: COG1175 ABC-type sugar transporters permease components; InterPro IPR000515; KEGG: lxx:Lxx23450 ABC transporter permease protein; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: A7B9K3 uncharacterized protein; PFAM: Binding-protein-dependent transporter inner membrane component YP_003696863.1 COGs: COG0395 ABC-type sugar transporter permease component; InterPro IPR000515; KEGG: pac:PPA0606 transporter permease; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: Q6AA54 transporter permease protein; PFAM: Binding-protein-dependent transporter inner membrane component YP_003696864.1 COGs: COG3669 alpha-L-fucosidase; InterPro IPR013781:IPR000933:IPR017853:IPR016286; KEGG: pac:PPA0607 glycosyl hydrolase, alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); SPTR: Q6AA53 glycosyl hydrolase, alpha-L-fucosidase; PFAM: alpha-L-fucosidase YP_003696865.1 KEGG: mjl:Mjls_0867 ATPase AAA; SPTR: Q1BDQ7 ATPas YP_003696866.1 KEGG: rlt:Rleg2_1061 hypothetical protein; SPTR: D0YT67 ATPase AAA YP_003696867.1 KEGG: tcu:Tcur_4129 phosphoenolpyruvate carboxylase; SPTR: D1A204 phosphoenolpyruvate carboxylase YP_003696868.1 KEGG: hypothetical protein; SPTR: C1FFK9 Predicted protein YP_003696869.1 InterPro IPR002296; KEGG: ajs:Ajs_0195 type III restriction system methylase; SPTR: C0W730 type III restriction system methylase; PFAM: N-6 DNA methylase YP_003696870.1 InterPro IPR002052:IPR002296:IPR011639; KEGG: dol:Dole_0904 site-specific DNA-methyltransferase (adenine-specific); PFAM: Eco57I restriction endonuclease; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: C0W729 type III restriction system endonuclease; PFAM: Eco57I restriction endonuclease YP_003696871.1 KEGG: cpb:Cphamn1_0745 hypothetical protein; SPTR: C0W728 type III restriction system endonuclease; PFAM: type III restriction enzyme, res subunit; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003696872.1 COGs: COG2801 transposase and inactivated derivatives; InterPro IPR001584:IPR012337; KEGG: cur:cur_1459 transposase for insertion sequence; PFAM: Integrase catalytic region; SPTR: B1VGV7 transposase for insertion sequence; PFAM: Integrase core domain YP_003696873.1 InterPro IPR016196; KEGG: tte:TTE2456 major facilitator superfamily permease; SPTR: Q8R7F6 Permeases of the major facilitator superfamily YP_003696874.1 InterPro IPR002711:IPR003615; KEGG: cdi:DIP2153 bacteriophage holin protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: C2KNY6 Possible bacteriophage endonuclease; PFAM: HNH endonuclease YP_003696875.1 KEGG: pac:PPA1591 hypothetical protein; SPTR: Q6A7D5 Conserved protein YP_003696876.1 KEGG: cms:CMS_0575 hypothetical protein; SPTR: B0RD96 membrane protein YP_003696877.1 KEGG: shw:Sputw3181_1204 nucleoside recognition domain-containing protein; SPTR: Q1ZIG2 membrane protein YP_003696878.1 KEGG: pac:PPA1589 hypothetical protein; SPTR: C2KNY1 uncharacterized protein; PFAM: Phage terminase, small subunit YP_003696879.1 COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR001412:IPR002133; KEGG: pac:PPA1587 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: methionine adenosyltransferase; SPTR: C2KNY0 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase YP_003696880.1 KEGG: bcm:Bcenmc03_2420 excinuclease ABC subunit C; SPTR: B1JWQ1 excinuclease ABC C subunit domain protein YP_003696881.1 COGs: COG0863 DNA modification methylase; InterProIPR002052:IPR002295:IPR003115:IPR002941:IPR 015840; KEGG: pac:PPA1586 ParB family DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: C2KNX9 ParB family DNA methylase; manually curated; PFAM: ParB-like nuclease domain; DNA methylase YP_003696882.1 KEGG: pac:PPA1583 hypothetical protein; SPTR: C2KNX5 uncharacterized protein YP_003696883.1 COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: cce:Ccel_2837 terminase; PFAM: terminase; SPTR: C2KNX4 Phage terminase; PFAM: Phage terminase YP_003696884.1 KEGG: Os01g0932600; hypothetical protein; SPTR: Q5JMG9 Os01g0932600 protein; PFAM: protein of unknown function (DUF1643) YP_003696885.1 COGs: COG4695 Phage-related protein; InterPro IPR006944; KEGG: tex:Teth514_1252 HK97 family phage portal protein; PFAM: portal protein; SPTR: C2KNX2 HK97 family portal protein; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family YP_003696886.1 KEGG: cgb:cg1911 secreted protein; SPTR: B6XSG0 uncharacterized protein YP_003696888.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR011991:IPR001789:IPR013249:IPR000792:IPR 011006; KEGG: kra:Krad_4263 LuxR family transcriptional regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; SPTR: D0YQC0 Two component LuxR family transcriptional regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003696889.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: cai:Caci_0638 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: C2KNP1 histidine kinase YP_003696890.1 KEGG: oan:Oant_1198 BioY protein YP_003696891.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR011991:IPR000792:IPR001789:IPR011006:IPR 016032; KEGG: ckp:ckrop_0504 two-component system, response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; SPTR: D0WNH1 Two-component system response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003696892.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594; KEGG: kse:Ksed_07210 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SPTR: D0WNH3 Sensor histidine kinase; manually curated; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003696893.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: kse:Ksed_07200 ABC-type antimicrobial peptide transporter, ATPase component; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: D0WNH4 Lipoprotein releasing system, ATP-binding protein LolD; PFAM: ABC transporter YP_003696894.1 InterPro IPR003838; KEGG: kse:Ksed_07190 predicted permease; PFAM: protein of unknown function DUF214; SPTR: D0WNH5 permease domain protein; PFAM: Predicted permease YP_003696895.1 KEGG: cjk:jk1223 hypothetical protein; SPTR: C0XR15 uncharacterized protein YP_003696896.1 KEGG: nml:Namu_3858 cobalamin synthesis CobW domain protein; SPTR: D1BFN4 Predicted GTPase, G3E family; PFAM: Cobalamin synthesis protein cobW C-terminal domain YP_003696897.1 COGs: COG0199 ribosomal protein S14; InterPro IPR001209; KEGG: gbr:Gbro_1466 ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: D0L6I7 ribosomal protein S14; PFAM: ribosomal protein S14p/S29e YP_003696898.1 InterPro IPR000473; KEGG: rop:ROP_04730 50S ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: C1ARP3 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; manually curated; PFAM: ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_003696899.1 COGs: COG0227 ribosomal protein L28; InterPro IPR001383; KEGG: kra:Krad_0287 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: C2AMB1 50S ribosomal protein L28P; TIGRFAM: ribosomal protein L28; PFAM: ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_003696900.1 COGs: COG0267 ribosomal protein L33; InterPro IPR018264:IPR001705; KEGG: cmi:CMM_2936 50S ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: A4AEQ3 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_003696901.1 COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR008881:IPR001179:IPR008880:IPR005215; KEGG: ach:Achl_2160 trigger factor; PFAM: trigger factor domain; peptidylprolyl isomerase FKBP-type; trigger factor domain protein; SPTR: D0WRB0 Trigger factor; TIGRFAM: trigger factor; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor YP_003696902.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR018215:IPR001907; KEGG: bcv:Bcav_2598 endopeptidase Clp; PFAM: peptidase S14 ClpP; PRIAM: endopeptidase Clp; SPTR: A7BDW4 ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease proteolytic subunit ClpP YP_003696903.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR018215:IPR001907; KEGG: bfa:Bfae_09560 ATP-dependent Clp protease proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; PRIAM: endopeptidase Clp; SPTR: D0WRA8 Clp protease; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease proteolytic subunit ClpP YP_003696904.1 COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterProIPR010603:IPR013093:IPR019489:IPR004487:IPR 003593; KEGG: jde:Jden_0957 ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: ATPase AAA; zinc finger C4 domain protein; Clp ATPase-like; SMART: ATPase AAA; SPTR: D0WRA7 ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_003696905.1 COGs: COG1609 transcriptional regulators; InterPro IPR013838:IPR000843:IPR001761:IPR010982; KEGG: rop:ROP_52910 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; SPTR: A7BCA6 uncharacterized protein; PFAM: Bacterial regulatory proteins, lacI family; family YP_003696906.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701:IPR016196; KEGG: esi:Exig_2601 sugar phosphate antiporter; PFAM: major facilitator superfamily MFS_1; SPTR: A7BCA4 uncharacterized protein; PFAM: Major Facilitator Superfamily YP_003696907.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760; KEGG: lin:lin1054 hypothetical protein; PFAM: inositol monophosphatase; SPTR: A7BCA5 uncharacterized protein; PFAM: inositol monophosphatase family YP_003696908.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR020845:IPR000873; KEGG: jde:Jden_0962 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: D0WRA5 CoA ligase; PFAM: AMP-binding enzyme YP_003696909.1 KEGG: bfa:Bfae_03100 predicted membrane protein; SPTR: C7MGJ5 Predicted membrane protein YP_003696910.1 COGs: COG0525 Valyl-tRNA synthetase; InterProIPR014729:IPR001412:IPR019754:IPR002300:IPR 013155:IPR009008:IPR009080; KEGG: xce:Xcel_1125 tRNA synthetase valyl/leucyl anticodon-binding protein; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; aminoacyl-tRNA synthetase class Ia; SPTR: D0WRA4 Valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); anticodon-binding domain YP_003696911.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterPro IPR003439:IPR017940:IPR003593:IPR011527; KEGG: pac:PPA0784 ABC-type transport system, fused ATPase and permease; PFAM: ABC transporter; SMART: AAA ATPase; SPTR: D0WRL0 ABC-type transporter, fused ATPase and permease; PFAM: ABC transporter transmembrane protein; ABC transporter YP_003696912.1 COGs: COG4988 ABC-type transporter involved in cytochrome bd biosynthesis ATPase and permease components; InterProIPR017871:IPR003439:IPR017940:IPR003593:IPR 011527; KEGG: pac:PPA0783 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: D0WRL1 ABC transporter ATP-binding protein; PFAM: ABC transporter transmembrane protein; ABC transporter YP_003696913.1 COGs: COG0060 isoleucyl-tRNA synthetase; InterProIPR014729:IPR001412:IPR015905:IPR002300:IPR 013155:IPR002301:IPR009080:IPR009008; KEGG: jde:Jden_0970 isoleucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; SPTR: C0W164 isoleucine--tRNA ligase; TIGRFAM: isoleucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase YP_003696914.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR004101:IPR018109:IPR001645; KEGG: bcv:Bcav_2567 FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; PRIAM: Tetrahydrofolate synthase; SPTR: D0WR93 Tetrahydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_003696915.1 COGs: COG0105 nucleoside diphosphate kinase; InterPro IPR001564; KEGG: krh:KRH_11260 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; PRIAM: nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; SPTR: C0W772 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase YP_003696916.1 COGs: COG2376 dihydroxyacetone kinase; InterPro IPR004007:IPR012737; KEGG: car:cauri_1454 dihydroxyacetone kinase; PFAM: Dak phosphatase; SPTR: A7BCU2 uncharacterized protein; TIGRFAM: dihydroxyacetone kinase subunit L; PFAM: DAK2 domain; TIGRFAM: dihydroxyacetone kinase, phosphoprotein-dependent, L subunit YP_003696917.1 COGs: COG1196 chromosome segregation ATPase; InterPro IPR003395:IPR010935:IPR011890; KEGG: bcv:Bcav_2550 chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; SPTR: D0WR83 Smc protein; TIGRFAM: chromosome segregation protein SMC; PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type YP_003696918.1 KEGG: SORBIDRAFT_08g000780; hypothetical protein; SPTR: D0WR82 uncharacterized protein YP_003696919.1 COGs: COG0552 Signal recognition particle GTPase; InterPro IPR013822:IPR000897:IPR004390:IPR003593; KEGG: bcv:Bcav_2548 signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; SPTR: D0WR81 Signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_003696920.1 COGs: COG0541 Signal recognition particle GTPase; InterProIPR013822:IPR004125:IPR000897:IPR004780:IPR 003593; KEGG: bcv:Bcav_2543 signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; SMART: ATPase AAA; SPTR: Q8VVP8 Signal recognition particle protein subunit; TIGRFAM: signal recognition particle protein; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein YP_003696921.1 COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: jde:Jden_0984 amidohydrolase; PFAM: amidohydrolase; SPTR: Q8VVP7 uncharacterized protein; manually curated YP_003696922.1 KEGG: bra:BRADO6741 cation efflux pump, DNA-damage-inducible protein; SPTR: A4Z2G6 Cation efflux pump, DNA-damage-inducible protein YP_003696923.1 InterPro IPR016090:IPR015141; KEGG: nml:Namu_4673 hypothetical protein; PFAM: Prokaryotic phospholipase A2; SPTR: C8RRW9 Secreted protein; PFAM: Prokaryotic phospholipase A2; Group XII secretory phospholipase A2 precursor (PLA2G12) YP_003696925.1 COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: bfa:Bfae_07750 cation diffusion facilitator family transporter; PFAM: cation efflux protein; SPTR: C7M9T6 Cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_003696926.1 COGs: COG0228 ribosomal protein S16; InterPro IPR000307:IPR020592; KEGG: bad:BAD_0209 30S ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: A0ZZV7 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_003696927.1 COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR004088:IPR009019; KEGG: xce:Xcel_1168 RNA-binding protein (KH domain); SPTR: D0WR64 KH domain protein; PFAM: KH domain YP_003696928.1 COGs: COG0806 RimM protein required for 16S rRNA processing; InterPro IPR002676:IPR007903:IPR011961; KEGG: xce:Xcel_1169 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; SPTR: D0WR63 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM YP_003696929.1 COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; InterPro IPR016181:IPR000182:IPR016009:IPR002649; KEGG: bcv:Bcav_2537 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; GCN5-related N-acetyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: D0WR62 tRNA (Guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (Guanine-1)-methyltransferase; acetyltransferase (GNAT) family; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_003696930.1 COGs: COG0335 ribosomal protein L19; InterPro IPR018257:IPR001857; KEGG: jde:Jden_0989 ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: C7R323 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_003696931.1 InterProIPR011056:IPR019758:IPR000223:IPR019759:IPR 015927; KEGG: bcv:Bcav_2535 signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region; SPTR: D0WR60 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S26; peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_003696932.1 COGs: COG0164 ribonuclease HII; InterPro IPR001352:IPR012337; KEGG: bcv:Bcav_2534 ribonuclease H; PFAM: ribonuclease HII/HIII; PRIAM: ribonuclease H; SPTR: D0WR59 ribonuclease HII; PFAM: ribonuclease HII YP_003696933.1 InterPro IPR019592; KEGG: jde:Jden_0992 hypothetical protein; PFAM: protein of unknown function DUF2469; SPTR: D0WR58 CTP synthase; PFAM: protein of unknown function (DUF2469) YP_003696934.1 COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509:IPR011335; KEGG: bcv:Bcav_2532 protein of unknown function UPF0102; PFAM: protein of unknown function UPF0102; SPTR: C1RMF8 Predicted endonuclease related to Holliday junction resolvase; PFAM: Uncharacterised protein family UPF0102 YP_003696935.1 COGs: COG0606 ATPase with chaperone activity; InterProIPR001208:IPR000523:IPR004482:IPR003593:IPR 020568; KEGG: kra:Krad_1408 Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: ATPase AAA; SPTR: D0WR55 Mg chelatase-like protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, subunit ChlI; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: Mg chelatase-related protein YP_003696936.1 COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: bcv:Bcav_2511 DNA protecting protein DprA; PFAM: SMF family protein; SPTR: D0WR54 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA YP_003696937.1 COGs: COG4974 Site-specific recombinase XerD; InterProIPR013762:IPR004107:IPR002104:IPR011010:IPR 010998; KEGG: mgi:Mflv_4135 site-specific tyrosine recombinase XerC; PFAM: integrase family protein; integrase; SPTR: D0WR53 Integrase/recombinase XerC; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_003696938.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209:IPR014877; KEGG: pac:PPA0598 serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Exportin 1-like; SPTR: Q6AA63 serine protease subtilase family; PFAM: Subtilase family YP_003696939.1 KEGG: krh:KRH_16080 hypothetical protein; SPTR: B2GKR9 uncharacterized protein YP_003696940.1 COGs: COG0739 membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR011055; KEGG: bcv:Bcav_2508 peptidase M23; PFAM: peptidase M23; SPTR: D0WR50 M23 peptidase domain protein; PFAM: peptidase family M23 YP_003696941.1 COGs: COG0052 ribosomal protein S2; InterPro IPR018130:IPR001865:IPR005706; KEGG: xce:Xcel_1180 ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: C0W045 ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_003696942.1 COGs: COG0264 translation elongation factor Ts; InterProIPR014039:IPR018101:IPR000449:IPR001816:IPR 009060; KEGG: bfa:Bfae_10130 translation elongation factor Ts (EF-Ts); PFAM: translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; SPTR: D0WR47 translation elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Elongation factor TS; TIGRFAM: translation elongation factor Ts YP_003696943.1 COGs: COG2086 electron transfer flavoprotein beta subunit; InterPro IPR014729:IPR014730:IPR012255; KEGG: pac:PPA2214 electron transfer flavoprotein (FixA protein); PFAM: electron transfer flavoprotein alpha/beta-subunit; SPTR: D0WNZ9 electron transfer flavoprotein; PFAM: electron transfer flavoprotein domain YP_003696944.1 COGs: COG2025 electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731:IPR001308; KEGG: pac:PPA2213 electron transfer flavoprotein, carnitine metabolism (FixB protein); PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; SPTR: D0WNZ8 electron transfer flavoprotein, alpha subunit; PFAM: electron transfer flavoprotein domain; electron transfer flavoprotein FAD-binding domain YP_003696945.1 COGs: COG0644 dehydrogenase (flavoprotein); InterPro IPR003042:IPR006076; KEGG: pac:PPA2212 electron transfer flavoprotein-quinone oxidoreductase (FixC protein); PFAM: FAD dependent oxidoreductase; PRIAM: electron-transferring-flavoprotein dehydrogenase; SPTR: D0WNZ7 FixC protein; PFAM: FAD dependent oxidoreductase YP_003696946.1 COGs: COG2440 Ferredoxin-like protein; InterPro IPR017896:IPR012206; KEGG: pth:PTH_1765 ferredoxin; SPTR: A7B9C8 uncharacterized protein YP_003696947.1 COGs: COG1113 gamma-aminobutyrate permease and related permease; InterPro IPR004840:IPR004841:IPR002293; KEGG: cro:ROD_32621 D-serine/D-alanine/glycine transporter; PFAM: amino acid permease-associated region; SPTR: D1BCC7 gamma-aminobutyrate permease-like transporter; PFAM: Amino acid permease YP_003696948.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR005829:IPR011701:IPR016196; KEGG: mlu:Mlut_15790 arabinose efflux permease family protein; PFAM: major facilitator superfamily MFS_1; SPTR: C2KMR3 Major facilitator superfamily MFS_1 transporter; PFAM: Major Facilitator Superfamily YP_003696949.1 InterPro IPR001387:IPR010982; KEGG: wpi:WPa_0277 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C5VEB4 uncharacterized protein YP_003696951.1 KEGG: dno:DNO_0609 chromosome segregation SMC family protein; SPTR: C2BRG5 uncharacterized protein YP_003696952.1 KEGG: hypothetical protein; SPTR: B6B241 acetylornithine deacetylase (ArgE) YP_003696953.1 KEGG: gtn:GTNG_1827 sodium:solute symport protein; SPTR: A4IPD3 Probable sodium:solute symport protein YP_003696954.1 COGs: COG1188 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); InterPro IPR002942; KEGG: krh:KRH_00910 heat shock protein HSP15; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: D0WKN8 heat shock protein 15; PFAM: S4 domain YP_003696955.1 COGs: COG0528 Uridylate kinase; InterPro IPR001048:IPR015963:IPR011817; KEGG: bcv:Bcav_2505 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: C0W7B1 UMP kinase; TIGRFAM: uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase YP_003696956.1 COGs: COG0233 ribosome recycling factor; InterPro IPR002661; KEGG: xce:Xcel_1183 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: D0WR41 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_003696957.1 COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: xce:Xcel_1184 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: D0WR40 phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family YP_003696958.1 COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR007197:IPR004383; KEGG: mlu:Mlut_21300radical SAM protein; PFAM: radical SAM protein; SPTR: D0WR38 radical SAM enzyme, Cfr family; TIGRFAM:radical SAM protein; PFAM: radical SAM superfamily; TIGRFAM:radical SAM protein YP_003696959.1 InterPro IPR019932:IPR019933; KEGG: bcv:Bcav_2501 hypothetical protein; SPTR: D0WR37 DivIVA domain repeat protein; TIGRFAM: DivIVA domain repeat protein; DivIVA domain; TIGRFAM: DivIVA domain; DivIVA domain repeat protein YP_003696960.1 COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR013512:IPR013644:IPR003821:IPR016040; KEGG: bad:BAD_1158 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: D0WR36 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003696961.1 COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR008915:IPR001478; KEGG: bcv:Bcav_2499 peptidase M50; PFAM: peptidase M50; SPTR: D0WR35 Zinc metalloprotease; PFAM: peptidase family M50; TIGRFAM: RIP metalloprotease RseP YP_003696962.1 COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; InterPro IPR004588:IPR011005:IPR016425; KEGG: bcv:Bcav_2498 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; SPTR: C5BWT2 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_003696963.1 COGs: COG3393 acetyltransferase; InterPro IPR016181:IPR000182; KEGG: bcv:Bcav_2497 GCN5-related protein N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: D0WR27 acetyltransferase, GNAT family protein; PFAM: acetyltransferase (GNAT) family YP_003696964.1 COGs: COG0442 prolyl-tRNA synthetase; InterProIPR004154:IPR006195:IPR002316:IPR002314:IPR 007214:IPR004500; KEGG: xce:Xcel_1206 prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; anticodon-binding domain protein; SPTR: D0WR26 Proline--tRNA ligase; TIGRFAM: prolyl-tRNA synthetase; PFAM: YbaK / prolyl-tRNA synthetases associated domain; anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II YP_003696965.1 KEGG: hypothetical protein; SPTR: D0WR25 uncharacterized protein YP_003696966.1 InterPro IPR003728; KEGG: bcv:Bcav_2492 protein of unknown function DUF150; PFAM: protein of unknown function DUF150; SPTR: D0WR24 uncharacterized protein; PFAM: Uncharacterised BCR, YhbC family COG0779 YP_003696967.1 COGs: COG0195 transcription elongation factor; InterProIPR013735:IPR012340:IPR015946:IPR004088:IPR 003029:IPR010213:IPR009019:IPR016027; KEGG: krh:KRH_16060 transcription elongation protein NusA; PFAM: NusA domain protein; SPTR: D0WR23 transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA YP_003696968.1 COGs: COG2740 nucleic-acid-binding protein implicated in transcription termination; InterPro IPR007393; KEGG: sco:SCO5705 hypothetical protein; PFAM: protein of unknown function DUF448; SPTR: Q9KYR0 uncharacterized protein SCO5705; PFAM: protein of unknown function (DUF448) YP_003696969.1 COGs: COG0532 translation initiation factor 2 (IF-2; GTPase); InterProIPR000178:IPR000795:IPR006847:IPR004161:IPR 005225:IPR009000; KEGG: xce:Xcel_1211 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein; SPTR: D0WR21 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; translation-initiation factor 2; translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2 YP_003696970.1 COGs: COG0858 ribosome-binding factor A; InterPro IPR015946:IPR020053:IPR000238; KEGG: bfa:Bfae_10330 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: D0WR20 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_003696971.1 COGs: COG0130 Pseudouridine synthase; InterPro IPR002501:IPR014780:IPR020103; KEGG: mva:Mvan_2329 tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; SPTR: C0W0C7 Possible tRNA-pseudouridine synthase I; TIGRFAM: tRNA pseudouridine synthase B; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_003696972.1 InterPro IPR005519:IPR019931; KEGG: cai:Caci_5772 acid phosphatase (class B); PFAM: acid phosphatase (class B); SPTR: B5HR56 Secreted protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: HAD superfamily, subfamily IIIB (acid phosphatase); TIGRFAM: LPXTG-motif cell wall anchor domain YP_003696973.1 KEGG: xce:Xcel_0812 hypothetical protein; SPTR: C2KQ49 uncharacterized protein YP_003696974.1 KEGG: jde:Jden_0372 hypothetical protein; SPTR: C7QZN5 uncharacterized protein YP_003696975.1 KEGG: xce:Xcel_0812 hypothetical protein; SPTR: C2KQ49 uncharacterized protein YP_003696976.1 KEGG: jde:Jden_0372 hypothetical protein; SPTR: D0YSN0 lipoprotein YP_003696977.1 InterPro IPR002477; KEGG: jde:Jden_0373 hypothetical protein; PFAM: peptidoglycan-binding protein; SPTR: C7QZN6 uncharacterized protein; PFAM: peptidoglycan binding domain YP_003696978.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: jde:Jden_0374 ABC transporter; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: C2KQ56 ABC superfamily ATP binding cassette transporter ABC protein; PFAM: ABC transporter YP_003696979.1 COGs: COG4591 ABC-type transporter involved in lipoprotein release permease; InterPro IPR003838; KEGG: jde:Jden_0375 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: D0YSN3 macrolide export ATP-binding/permease MacB; PFAM: Predicted permease YP_003696980.1 COGs: COG0196 FAD synthase; InterPro IPR014729:IPR015865:IPR015864:IPR002606; KEGG: bcv:Bcav_2486 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; SPTR: D0WR17 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase YP_003696981.1 KEGG: ABC transporter family protein; SPTR: Q9F6C3 ABC transporter YP_003696982.1 COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR007331:IPR019931; KEGG: pac:PPA0779 for Fe-transport; PFAM: Htaa domain protein; SPTR: C0W1M4 uncharacterized protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Htaa YP_003696983.1 COGs: COG4558 ABC-type hemin transporter periplasmic component; InterPro IPR002491; KEGG: pac:PPA0780 hemin receptor precursor; PFAM: periplasmic binding protein; SPTR: C0W1M5 HmuT family heme-binding lipoprotein; PFAM: Periplasmic binding protein YP_003696984.1 COGs: COG0609 ABC-type Fe3+-siderophore transporter permease; InterPro IPR000522; KEGG: pac:PPA0781 ABC-type transporter permease; PFAM: transporter permease; SPTR: C0W1M6 hemic ABC superfamily ATP binding cassette transporter membrane protein; PFAM: FecCD transport family YP_003696985.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transporters ATPase components; InterPro IPR017871:IPR003439:IPR003593; KEGG: pac:PPA0782 ABC-type transporter ATPase component; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: C0W1M7 ABC superfamily ATP binding cassette transporter ABC protein; PFAM: ABC transporter YP_003696986.1 COGs: COG0184 ribosomal protein S15P/S13E; InterPro IPR009068:IPR000589:IPR005290; KEGG: bde:BDP_0366 RpsO 30S ribosomal protein S15P; PFAM: ribosomal protein S15; SPTR: D0WR16 ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_003696987.1 COGs: COG1185 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); InterProIPR015848:IPR012340:IPR004088:IPR003029:IPR 001247:IPR015847:IPR018111:IPR014069:IPR012162:IPR004087:I PR020568:IPR016027; KEGG: xce:Xcel_1217 guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; polynucleotide phosphorylase, phosphorolytic RNA-binding; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; RNA binding S1 domain protein; PRIAM: polyribonucleotide nucleotidyltransferase; SMART: KH domain protein; SPTR: D0WR15 polyribonucleotide nucleotidyltransferase; TIGRFAM: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease family, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase; guanosine pentaphosphate synthetase I/polynucleotide phosphorylase YP_003696988.1 InterPro IPR016196:IPR011701; KEGG: str:Sterm_2283 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C2EDD4 uncharacterized protein; PFAM: Major Facilitator Superfamily YP_003696989.1 InterPro IPR016181; KEGG: bcv:Bcav_2469 GCN5-related protein N-acetyltransferase; SPTR: C0W7E2 uncharacterized protein YP_003696990.1 COGs: COG0595 hydrolase of the metallo-beta-lactamase superfamily; InterPro IPR011108; KEGG: xce:Xcel_1230 beta-lactamase domain protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: C1RG99 Predicted hydrolase of the metallo-beta-lactamase superfamily; PFAM: metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein YP_003696991.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR008995:IPR017871:IPR003593:IPR003439:IPR 013611; KEGG: xce:Xcel_2995 ABC transporter; PFAM: ABC transporter related; transport-associated OB domain protein; SMART: AAA ATPase; SPTR: D1BZA4 ABC transporter; PFAM: ABC transporter; TOBE domain; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit YP_003696992.1 COGs: COG1178 ABC-type Fe3+ transporter permease component; InterPro IPR000515; KEGG: xce:Xcel_2994 binding-protein-dependent transporters inner membrane component; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: A3TLH6 Iron(III)-transport system permease sfuB; PFAM: Binding-protein-dependent transporter inner membrane component YP_003696993.1 COGs: COG1840 ABC-type Fe3+ transporter periplasmic component; InterPro IPR006059; KEGG: xce:Xcel_2993 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; SPTR: D1BZA2 extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding protein YP_003696994.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR011991:IPR001867; KEGG: xce:Xcel_2992 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; SPTR: D1BZA1 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal YP_003696995.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358:IPR003594:IPR009082:IPR003661:IPR 005467; KEGG: xce:Xcel_2991 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C2KNB8 Sensor protein; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003696996.1 COGs: COG0111 phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR016040:IPR006140; KEGG: art:Arth_3671 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; SPTR: C1RHG2 phosphoglycerate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_003696997.1 COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR003593:IPR002543:IPR018541; KEGG: kra:Krad_1482 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: ATPase AAA; SPTR: D0WR03 FtsK/SpoIIIE family protein; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family YP_003696998.1 COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462:IPR004570; KEGG: rop:ROP_67400 phosphatidylglycerophosphate synthase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: D0WR00 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_003696999.1 COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR008136; KEGG: kse:Ksed_17980 competence/damage-inducible protein CinA; PFAM: damage inducible protein CinA; SPTR: A7BD51 uncharacterized protein; PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain YP_003697000.1 InterPro IPR010982:IPR001387; KEGG: aau:AAur_1591 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: D0WQZ8 Helix-turn-helix domain protein; PFAM: Helix-turn-helix YP_003697001.1 KEGG: tcu:Tcur_3297 hypothetical protein; SPTR: D0WQZ7 uncharacterized protein; PFAM: protein of unknown function (DUF3046) YP_003697002.1 COGs: COG0468 RecA/RadA recombinase; InterProIPR001553:IPR020584:IPR003593:IPR020588:IPR 020587:IPR013765; KEGG: jde:Jden_1041 RecA protein; PFAM: RecA domain protein; SMART: ATPase AAA; SPTR: D0WQZ6 protein RecA; TIGRFAM: recA protein; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_003697003.1 COGs: COG2137 conserved hypothetical protein; InterPro IPR003783; KEGG: sgr:SGR_1744 recombination regulator RecX; PFAM: regulatory protein RecX; SPTR: B4VD63 Regulatory protein recX; PFAM: RecX family YP_003697004.1 COGs: COG0621 2-methylthioadenine synthetase; InterProIPR006638:IPR002792:IPR013848:IPR013785:IPR 005839:IPR006463:IPR007197; KEGG: bcv:Bcav_2442 RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: D0WQZ4 tRNA-I(6)A37 thiotransferase enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family YP_003697005.1 COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022:IPR002627; KEGG: bcv:Bcav_2439 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: D0WQZ3 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA) YP_003697006.1 COGs: COG2813 16S RNA G1207 methylase RsmC; InterPro IPR007848; KEGG: rmu:RMDY18_14450 16S RNA G1207 methylase RsmC; PFAM: methyltransferase small; SPTR: C6R2F9 methyltransferase small; PFAM: methyltransferase small domain YP_003697007.1 COGs: COG2262 GTPase; InterPro IPR006073:IPR016496:IPR002917; KEGG: bcv:Bcav_2436 GTP-binding protein HflX; PFAM: GTP-binding protein HSR1-related; SPTR: D0WQY6 GTP-binding protein HflX; TIGRFAM: GTP-binding proten HflX; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX YP_003697008.1 COGs: COG1199 Rad3-related DNA helicase; InterPro IPR014001:IPR006555:IPR014013; KEGG: xce:Xcel_1256 helicase C2; SMART: helicase c2; DEAD-like helicase; SPTR: D0WQY5 ATP-dependent helicase DinG YP_003697009.1 COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterProIPR006197:IPR015927:IPR011991:IPR011056:IPR 006200:IPR006199:IPR019759; KEGG: xce:Xcel_1258 SOS-response transcriptional repressor, LexA; PFAM: LexA DNA-binding domain protein; peptidase S24/S26A/S26B, conserved region; SPTR: D1C0A0 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA binding domain; peptidase S24-like; TIGRFAM: SOS regulatory protein LexA YP_003697010.1 InterPro IPR002482:IPR018392; KEGG: art:Arth_1469 peptidoglycan-binding LysM; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: D0WQY1 LysM domain protein YP_003697011.1 COGs: COG1327 transcriptional regulator consists of a Zn-ribbon and ATP-cone domains; InterPro IPR005144:IPR003796; KEGG: bfa:Bfae_10640 transcriptional regulator NrdR; PFAM: ATP-cone domain protein; SPTR: D1BJ23 transcriptional regulator NrdR; PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR YP_003697012.1 COGs: COG0318 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR018062:IPR020845:IPR000873; KEGG: saq:Sare_2221 acyl-CoA synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: D0WQX6 CoA ligase; PFAM: AMP-binding enzyme YP_003697013.1 COGs: COG3973 Superfamily I DNA and RNA helicase; InterPro IPR014016:IPR000212; KEGG: bcv:Bcav_2428 ATP-dependent DNA helicase; PFAM: UvrD/REP helicase; SPTR: D0WQX3 DNA or RNA helicase, Superfamily I; PFAM: UvrD/REP helicase YP_003697014.1 InterPro IPR002766; KEGG: tfu:Tfu_0926 hypothetical protein; PFAM: protein of unknown function DUF75; SPTR: D0WQX2 uncharacterized protein; PFAM: PAC2 family YP_003697015.1 COGs: COG0421 Spermidine synthase; KEGG: bcv:Bcav_2425 hypothetical protein; SPTR: D0WQX1 spermidine synthase YP_003697016.1 COGs: COG0389 nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR017961:IPR017963:IPR017962:IPR001126; KEGG: bcv:Bcav_2424 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: D0WQX0 DNA polymerase IV; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; IMS family HHH motif YP_003697017.1 KEGG: krh:KRH_14920 hypothetical protein; SPTR: D0WQW9 membrane protein; PFAM: protein of unknown function (DUF3040) YP_003697018.1 COGs: COG2001 conserved hypothetical protein; InterPro IPR003444:IPR020603; KEGG: krh:KRH_14910 cell division protein MraZ; PFAM: MraZ domain; SPTR: D0WQW6 MraZ protein; TIGRFAM: MraZ protein; PFAM: MraZ protein; TIGRFAM: mraZ protein YP_003697019.1 COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; InterPro IPR002903; KEGG: xce:Xcel_1276 S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; SPTR: D0WQW5 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW YP_003697020.1 KEGG: krh:KRH_14890 hypothetical protein; SPTR: D0WQW4 membrane protein YP_003697021.1 COGs: COG0768 cell division protein FtsI/penicillin-binding protein 2; InterPro IPR012338:IPR005311:IPR001460; KEGG: bcv:Bcav_2416 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: peptidoglycan glycosyltransferase; SPTR: D0WQW3 Penicillin binding protein transpeptidase domain protein; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding protein dimerisation domain YP_003697022.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterProIPR013221:IPR004101:IPR018109:IPR005761:IPR 000713; KEGG: xce:Xcel_1279 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: D0WQW2 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases YP_003697023.1 COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR013221:IPR004101:IPR005863:IPR000713; KEGG: bcv:Bcav_2414 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: D0WQW1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-d iaminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_003697024.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018480:IPR003524:IPR018481; KEGG: bcv:Bcav_2413 phospho-N-acetylmuramoyl-pentapeptide-transferas E; PFAM: glycosyl transferase, family 4, conserved region; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR: D0WQW0 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-trans ferase; PFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase YP_003697025.1 COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013221:IPR004101:IPR018109:IPR005762; KEGG: bcv:Bcav_2412 UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: C1RIZ0 UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_003697026.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR018488:IPR001182; KEGG: kra:Krad_3200 cell division protein FtsW; PFAM: cell cycle protein; SPTR: D0WQN1 cell division protein FtsW; PFAM: cell cycle protein YP_003697027.1 COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR006009:IPR004276:IPR007235; KEGG: bcv:Bcav_2410 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; glycosyltransferase 28 domain; SPTR: C5BW59 UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyltransferase family 28 N-terminal domain; glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_003697028.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterProIPR013221:IPR004101:IPR016040:IPR005758:IPR 000713; KEGG: bcv:Bcav_2409 UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; SPTR: D0WQV8 UDP-N-acetylmuramate--alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase YP_003697029.1 COGs: COG1589 cell division septal protein; KEGG: jde:Jden_1076 polypeptide-transport-associated domain protein FtsQ-type; SPTR: D0WQV7 cell division protein FtsQ-like protein; PFAM: cell division protein FtsQ YP_003697030.1 COGs: COG0206 cell division GTPase; InterProIPR000158:IPR019746:IPR008280:IPR020805:IPR 003008:IPR018316; KEGG: cai:Caci_6104 cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: D0WQV5 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ YP_003697031.1 COGs: COG1496 conserved hypothetical protein; InterPro IPR011324:IPR003730; KEGG: tfu:Tfu_1114 hypothetical protein; PFAM: protein of unknown function DUF152; SPTR: Q47QW5 uncharacterized protein; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: conserved hypothetical protein TIGR00726 YP_003697032.1 COGs: COG1799 conserved hypothetical protein; InterPro IPR007561; KEGG: bcv:Bcav_2405 protein of unknown function DUF552; PFAM: protein of unknown function DUF552; SPTR: D0WQV3 uncharacterized protein; PFAM: protein of unknown function (DUF552) YP_003697033.1 InterPro IPR003425; KEGG: fra:Francci3_1422 hypothetical protein; PFAM: protein of unknown function YGGT; SPTR: C2BWZ3 transmembrane protein; PFAM: YGGT family YP_003697034.1 InterPro IPR019933:IPR007793; KEGG: xce:Xcel_1291 DivIVA family protein; PFAM: DivIVA family protein; SPTR: D0WQV0 cell division protein, DivIVA family; TIGRFAM: DivIVA domain; PFAM: DivIVA protein; TIGRFAM: DivIVA domain YP_003697035.1 COGs: COG0597 Lipoprotein signal peptidase; InterPro IPR001872; KEGG: xce:Xcel_1293 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; SPTR: D0WQU9 Lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_003697036.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterProIPR020103:IPR006224:IPR002942:IPR006225:IPR 006145; KEGG: bcv:Bcav_2401 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SPTR: D0WQU8 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase YP_003697037.1 COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR016195:IPR016027:IPR003141:IPR004805:IPR 004013:IPR011708:IPR004365; KEGG: jde:Jden_1086 DNA polymerase III alpha subunit; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: D0WQU6 DNA polymerase III, subunit alpha; TIGRFAM: DNA polymerase III alpha subunit; PFAM: Bacterial DNA polymerase III subunit alpha; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_003697038.1 COGs: COG2501 conserved hypothetical protein; InterPro IPR002942; KEGG: xce:Xcel_1301 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; SPTR: D0WQU2 RNA-binding S4; PFAM: S4 domain YP_003697039.1 COGs: COG0586 membrane-associated protein; KEGG: nml:Namu_0645 SNARE associated Golgi protein; SPTR: C0W0A7 uncharacterized protein; PFAM: SNARE associated Golgi protein YP_003697040.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: bcv:Bcav_1772 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: C5C4Q0 ferric uptake regulator, Fur family; PFAM: ferric uptake regulator family YP_003697041.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transporters permeases; InterPro IPR001626; KEGG: bcv:Bcav_1773 ABC-3 protein; PFAM: ABC transporter; SPTR: C0W322 metal cation ABC superfamily ATP binding cassette transporter membrane protein; PFAM: ABC 3 transport family YP_003697042.1 COGs: COG1121 ABC-type Mn/Zn transporters ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: jde:Jden_1534 ABC transporter related; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: D1BF11 ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter YP_003697043.1 COGs: COG0803 ABC-type metal ion transporter periplasmic component/surface adhesin; InterPro IPR006127; KEGG: gym:GYMC10_3445 periplasmic solute binding protein; PFAM: periplasmic solute binding protein; SPTR: C0W0B1 metal ABC superfamily ATP binding cassette transporter binding protein; PFAM: Periplasmic solute binding protein family YP_003697044.1 COGs: COG0423 glycyl-tRNA synthetase (class II); InterProIPR002315:IPR004154:IPR019825:IPR006195:IPR 002314; KEGG: pac:PPA0949 glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); anticodon-binding domain protein; SPTR: D0WQT5 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase; PFAM: anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type YP_003697045.1 COGs: COG5438 multitransmembrane protein; InterPro IPR012507; KEGG: bcv:Bcav_1777 YibE/F family protein; PFAM: YibE/F family protein; SPTR: D0WQT4 membrane protein; PFAM: YibE/F-like protein YP_003697046.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR018517:IPR013785:IPR004652:IPR001269; KEGG: xce:Xcel_2165 TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase; SPTR: D0WQT3 tRNA-dihydrouridine synthase; TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family YP_003697047.1 KEGG: rak:A1C_03465 thioredoxin reductase; SPTR: A8GNK2 Ferredoxin--NADP reductase YP_003697048.1 COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR003607:IPR006261:IPR006674; KEGG: bcv:Bcav_1786 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: D0WQT2 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, ; uncharacterized domain HDIG YP_003697049.1 KEGG: ere:EUBREC_0477 galactose/glucose-binding lipoprotein; SPTR: C9L3Z0 Galactose/glucose-binding lipoprotein YP_003697050.1 COGs: COG1129 ABC-type sugar transporter ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ere:EUBREC_0478 galactoside ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C0FJE8 uncharacterized protein; PFAM: ABC transporter YP_003697051.1 COGs: COG4211 ABC-type glucose/galactose transporter permease; InterPro IPR001851; KEGG: ere:EUBREC_0479 galactoside ABC transporter permease, PFAM: inner-membrane translocator; SPTR: A8RKC0 uncharacterized protein; PFAM: Branched-chain amino acid transporter / permease YP_003697052.1 InterPro IPR001763; KEGG: bfa:Bfae_25560 rhodanese-related sulfurtransferase; SMART: rhodanese; SPTR: C1XP10 Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain YP_003697053.1 COGs: COG0358 DNA primase; InterProIPR002694:IPR006154:IPR013264:IPR006295:IPR 006171:IPR019475; KEGG: bcv:Bcav_1788 DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase, DnaB-helicase binding domain; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; SPTR: D0WQS5 DNA primase; TIGRFAM: DNA primase; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core YP_003697054.1 KEGG: bfa:Bfae_27220 hypothetical protein; SPTR: C7MH45 uncharacterized protein YP_003697055.1 InterPro IPR000601; KEGG: xce:Xcel_1537 hypothetical protein; SPTR: D1BS75 uncharacterized protein YP_003697056.1 KEGG: hypothetical protein; SPTR: D0WQR6 membrane protein YP_003697057.1 KEGG: xce:Xcel_2146 hypothetical protein; SPTR: D0WQR5 uncharacterized protein YP_003697058.1 KEGG: dda:Dd703_1042 Hpt sensor signal transduction histidine kinase; SPTR: C6CBR2 Sensor protein YP_003697059.1 InterPro IPR000601:IPR000675; KEGG: hmu:Hmuk_0622 PKD domain containing protein; PFAM: PKD domain containing protein; cutinase; SMART: PKD domain containing protein; SPTR: C5VAN7 Cutinase family protein; PFAM: Cutinase; PKD domain YP_003697061.1 COGs: COG1183 phosphatidylserine synthase; KEGG: pla:Plav_1484 phosphatidylcholine synthase; SPTR: C0VXW7 phosphatidylcholine synthase YP_003697062.1 COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR016040:IPR010099:IPR001509:IPR013549; KEGG: sma:SAV_6013 NAD-dependent epimerase/dehydratase family protein; PFAM: NAD-dependent epimerase/dehydratase; hypothetical protein; SPTR: Q82AP3 NAD dependent epimerase/dehydratase family; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777 YP_003697063.1 KEGG: bcv:Bcav_1800 hypothetical protein; SPTR: C0W3X4 uncharacterized protein; PFAM: protein of unknown function (DUF3145) YP_003697064.1 KEGG: asa:ASA_0911 acyl carrier protein; SPTR: A4SJH3 acyl carrier protein YP_003697065.1 KEGG: bcv:Bcav_1809 hypothetical protein; SPTR: C5C4T7 uncharacterized protein YP_003697066.1 COGs: COG0009 translation factor (SUA5); InterPro IPR017945:IPR006070:IPR004388; KEGG: bfa:Bfae_12460 translation factor SUA5; PFAM: SUA5/yciO/yrdC domain; SPTR: D0WQR0 Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_003697067.1 COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: rer:RER_36620 hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: D0WQQ9 phosphatase, HAD family; PFAM: haloacid dehalogenase-like hydrolase YP_003697068.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterProIPR011527:IPR003593:IPR003439:IPR017940:IPR 001140; KEGG: ami:Amir_3754 ABC transporter transmembrane protein; PFAM: ABC transporter related; ABC transporter transmembrane protein; SMART: AAA ATPase; SPTR: C1RL82 ABC-type multidrug transporter, ATPase and permease component; PFAM: ABC transporter transmembrane protein; ABC transporter YP_003697069.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterProIPR011527:IPR017871:IPR016160:IPR003593:IPR 003439:IPR017940:IPR001140; KEGG: bcv:Bcav_2312 ABC transporter transmembrane protein; PFAM: ABC transporter transmembrane protein; ABC transporter related; SMART: ATPase AAA; SPTR: C5BVW2 ABC transporter transmembrane protein; PFAM: ABC transporter transmembrane protein; ABC transporter YP_003697070.1 COGs: COG2609 pyruvate dehydrogenase complex dehydrogenase (E1) component; InterPro IPR009014:IPR004660:IPR015941; KEGG: jde:Jden_1512 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; SPTR: D0WQQ7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: transketolase, thiamine diphosphate binding domain; TIGRFAM: pyruvate dehydrogenase E1 component, homodimeric type YP_003697071.1 KEGG: bcv:Bcav_1811 hypothetical protein; SPTR: C0W3W7 uncharacterized protein; PFAM: protein of unknown function (DUF3052) YP_003697073.1 COGs: COG3525 N-acetyl-beta-hexosaminidase; InterProIPR001540:IPR017853:IPR008979:IPR000421:IPR 013781:IPR015883; KEGG: sgr:SGR_2685 beta-N-acetylglucosaminidase; PFAM: glycoside hydrolase, family 20, catalytic core; coagulation factor 5/8 type domain protein; SPTR: A8REL0 uncharacterized protein; PFAM: F5/8 type C domain; glycosyl hydrolase family 20, catalytic domain; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003697074.1 COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: svi:Svir_06980 conserved hypothetical protein TIGR00486; PFAM: protein of unknown function DUF34; SPTR: C7MVQ0 uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: conserved hypothetical protein TIGR00486 YP_003697075.1 KEGG: bcv:Bcav_1829 hypothetical protein; SPTR: D0WQQ0 uncharacterized protein YP_003697076.1 COGs: COG3022 conserved hypothetical protein; InterPro IPR005583; KEGG: aau:AAur_2412 hypothetical protein; PFAM: protein of unknown function DUF328; SPTR: D0WQP9 uncharacterized protein; PFAM: protein of unknown function (DUF328) YP_003697077.1 COGs: COG1940 transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: xce:Xcel_2049 ROK family protein; PFAM: ROK family protein; PRIAM: polyphosphate--glucose phosphotransferase; SPTR: D1BFU6 polyphosphate glucokinase; PFAM: ROK family YP_003697078.1 COGs: COG0024 methionine aminopeptidase; InterPro IPR001714:IPR000994:IPR002467; KEGG: krh:KRH_10860 methionine aminopeptidase; PFAM: peptidase M24; PRIAM: Methionyl aminopeptidase; SPTR: C0W3W2 methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_003697079.1 COGs: COG0413 Ketopantoate hydroxymethyltransferase; InterPro IPR015813:IPR003700; KEGG: jde:Jden_1489 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: D0WQP6 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_003697080.1 COGs: COG0174 glutamine synthetase; InterPro IPR008147:IPR008146:IPR014746; KEGG: jde:Jden_1487 glutamine synthetase, type I; PFAM: glutamine synthetase; glutamine synthetase beta-Grasp; SPTR: D0WQP4 glutamate--ammonia ligase; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I YP_003697081.1 COGs: COG1391 glutamine synthetase adenylyltransferase; InterPro IPR005190:IPR013546; KEGG: bcv:Bcav_1850 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; PRIAM: [glutamate--ammonia-ligase] adenylyltransferase; SPTR: D0WQP3 [glutamate-ammonia-ligase] adenylyltransferase; PFAM: GlnD PII-uridylyltransferase; glutamate-ammonia ligase adenylyltransferase YP_003697082.1 COGs: COG0406 fructose-2 6-bisphosphatase; InterPro IPR001345:IPR013078; KEGG: aau:AAur_3898 phosphoglycerate mutase family protein; PFAM: phosphoglycerate mutase; SPTR: A1RBG3 phosphoglycerate mutase family protein; PFAM: phosphoglycerate mutase family YP_003697083.1 COGs: COG0174 glutamine synthetase; InterPro IPR008147:IPR008146:IPR014746:IPR004809; KEGG: kra:Krad_3291 glutamine synthetase, type I; PFAM: glutamine synthetase; glutamine synthetase beta-Grasp; SPTR: D0WQN7 glutamine synthetase; TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I YP_003697084.1 KEGG: mlu:Mlut_13380 hypothetical protein; SPTR: D0WQN5 integral membrane protein YP_003697085.1 InterPro IPR016196:IPR011701; KEGG: bfa:Bfae_28500 major facilitator superfamily transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C0W0I0 Major facilitator transporter; PFAM: Major Facilitator Superfamily YP_003697086.1 COGs: COG0508 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterProIPR011053:IPR004167:IPR003016:IPR000089:IPR 014276:IPR001078; KEGG: rmu:RMDY18_07280 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; SPTR: A7BC68 uncharacterized protein; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase YP_003697087.1 COGs: COG1249 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR013027:IPR000815:IPR016156:IPR012999:IPR 004099:IPR006258; KEGG: jde:Jden_1475 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: D0WQM8 dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase YP_003697088.1 KEGG: stp:Strop_2530 hypothetical protein; SPTR: D0WQM7 oxidoreductase YP_003697089.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transporters ATPase components; InterPro IPR017871:IPR003593:IPR003439; KEGG: cdi:DIP0585 iron transport system ATP-binding protein; PFAM: ABC transporter; SMART: AAA ATPase; SPTR: Q6NJ28 iron transporter ATP-binding protein; PFAM: ABC transporter YP_003697090.1 COGs: COG0609 ABC-type Fe3+-siderophore transporter permease; InterPro IPR000522; KEGG: cdi:DIP0584 iron transporter membrane protein; PFAM: transporter permease protein; SPTR: Q6NJ29 iron transporter membrane protein; PFAM: FecCD transport family YP_003697091.1 COGs: COG0609 ABC-type Fe3+-siderophore transporter permease; InterPro IPR000522; KEGG: cdi:DIP0583 iron transporter membrane protein; PFAM: transporter permease protein; SPTR: Q6NJ30 iron transporter membrane protein; PFAM: FecCD transport family YP_003697092.1 COGs: COG4594 ABC-type Fe3+-citrate transporter periplasmic component; InterPro IPR002491; KEGG: cdi:DIP0582 iron transporter binding (secreted) protein; PFAM: periplasmic binding protein; SPTR: Q6NJ31 iron transporter binding (Secreted) protein; PFAM: Periplasmic binding protein YP_003697093.1 COGs: COG0260 leucyl aminopeptidase; InterPro IPR000819:IPR000923:IPR008283; KEGG: bcv:Bcav_1874 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein; SPTR: C5C502 leucyl aminopeptidase; PFAM: Cytosol aminopeptidase family, catalytic domain; Cytosol aminopeptidase family, N-terminal domain YP_003697094.1 KEGG: bcv:Bcav_1880 integral membrane protein; SPTR: D0WQM3 membrane protein; PFAM: protein of unknown function (DUF3043) YP_003697095.1 COGs: COG0624 acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: aau:AAur_2217 M20/M25/M40 family peptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: D0WQM1 peptidase, M20 family; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain YP_003697096.1 KEGG: bcv:Bcav_1882 glycerate kinase; SPTR: D0WQM0 glycerate kinase YP_003697097.1 COGs: COG0316 conserved hypothetical protein; InterPro IPR000361:IPR017870:IPR016092; KEGG: lxx:Lxx15060 hypothetical protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: Q6AE82 uncharacterized protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein YP_003697098.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: bcv:Bcav_1884 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: D0WQL7 Binding protein; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_003697099.1 COGs: COG0605 superoxide dismutase; InterPro IPR001189:IPR019832:IPR019831:IPR019833; KEGG: bfa:Bfae_19570 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; SPTR: D0WQL6 superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain YP_003697100.1 InterPro IPR011006:IPR001789; KEGG: bcv:Bcav_1893 response regulator receiver protein; SPTR: D0WQL5 Two-component system response regulator YP_003697101.1 COGs: COG2176 DNA polymerase III subunit alpha (gram-positive type); InterProIPR012337:IPR000305:IPR006055:IPR006054:IPR 013520; KEGG: bcv:Bcav_1900 DNA polymerase III subunit epsilon; PFAM: exonuclease RNase T and DNA polymerase III; excinuclease ABC C subunit domain protein; PRIAM: DNA-directed DNA polymerase; SMART: exonuclease; excinuclease ABC C subunit domain protein; SPTR: D0WQL3 DNA polymerase III subunit epsilon; TIGRFAM: DNA polymerase III subunit epsilon; PFAM: exonuclease; GIY-YIG catalytic domain; TIGRFAM: exonuclease, DNA polymerase III, subunit epsilon family YP_003697102.1 KEGG: cmi:CMM_0593 hypothetical protein; SPTR: A5CNI1 uncharacterized protein YP_003697103.1 COGs: COG0205 6-phosphofructokinase; InterPro IPR000023; KEGG: bcv:Bcav_1905 phosphofructokinase; PFAM: phosphofructokinase; SPTR: D0WQL1 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase; PFAM: phosphofructokinase YP_003697104.1 COGs: COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR002480; KEGG: bcv:Bcav_1906 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: C2BWS8 3-deoxy-7-phosphoheptulonate synthase; PFAM: class-II DAHP synthetase family YP_003697105.1 COGs: COG2815 conserved hypothetical protein; InterProIPR011009:IPR008271:IPR020635:IPR002290:IPR 005543:IPR000719:IPR017442; KEGG: bcv:Bcav_1908 serine/threonine protein kinase with PASTA sensor(s); PFAM: serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; PASTA domain containing protein; SPTR: A7BDG0 uncharacterized protein; PFAM: protein kinase domain; PASTA domain YP_003697106.1 InterPro IPR002482:IPR018392:IPR008258; KEGG: rsa:RSal33209_2511 endopeptidase LytE precursor; PFAM: lytic transglycosylase catalytic; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: D0WQK8 LysM domain protein; PFAM: transglycosylase SLT domain; LysM domain YP_003697107.1 KEGG: bcv:Bcav_1909 hypothetical protein; SPTR: D0WQK7 transcriptional regulatory protein YP_003697108.1 COGs: COG0142 geranylgeranyl pyrophosphate synthase; InterPro IPR008949:IPR000092; KEGG: krh:KRH_14940 polyprenyl synthase; PFAM: polyprenyl synthetase; SPTR: D0WQK6 polyprenyl synthetase; PFAM: polyprenyl synthetase YP_003697109.1 KEGG: bcv:Bcav_1912 hypothetical protein; SPTR: D0WQK5 ferredoxin reductase YP_003697110.1 InterPro IPR014729; KEGG: bcv:Bcav_1913 UspA domain protein; SPTR: C5C5H8 UspA domain protein; PFAM: Universal stress protein family YP_003697111.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR000943:IPR013325:IPR013324:IPR005479:IPR 011991:IPR014284:IPR012760:IPR009042:IPR007627:IPR007624:I PR007630; KEGG: mlu:Mlut_13280 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; SPTR: D0WQJ8 carbamoyl-phosphate synthase L chain, ATP-binding; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain YP_003697112.1 COGs: COG0847 DNA polymerase III subunit epsilon and related 3'-5' exonuclease; InterPro IPR012337:IPR006055:IPR006054:IPR013520; KEGG: sro:Sros_3860 DNA polymerase III subunit epsilon and related 3'-5' exonuclease-like protein; PFAM: exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: exonuclease; SPTR: D0WQJ6 exonuclease, DNA polymerase III subunit epsilon family; TIGRFAM: DNA polymerase III subunit epsilon; PFAM: exonuclease; TIGRFAM: exonuclease, DNA polymerase III subunit epsilon family YP_003697113.1 KEGG: jde:Jden_1426 hypothetical protein; SPTR: C7R4M1 uncharacterized protein YP_003697114.1 COGs: COG0187 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR001241:IPR000565:IPR013760:IPR003594:IPR 020568:IPR018522:IPR013759:IPR013506:IPR006171:IPR002288; KEGG: bcv:Bcav_1922 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: D0WQJ3 DNA gyrase subunit B; PFAM: Toprim domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase subunit beta, carboxyl terminus YP_003697115.1 InterPro IPR016181:IPR000182; KEGG: bcv:Bcav_1925 GCN5-related protein N-acetyltransferase; SPTR: C1RL77 acetyltransferase (GNAT) family protein YP_003697116.1 InterPro IPR016181:IPR000182; KEGG: bcv:Bcav_1925 GCN5-related protein N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: D0WQJ2 acetyltransferase, GNAT family; PFAM: acetyltransferase (GNAT) family YP_003697117.1 COGs: COG0188 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterProIPR013760:IPR002205:IPR013758:IPR013757:IPR 006691; KEGG: bcv:Bcav_1928 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: C5C5J3 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller YP_003697118.1 KEGG: nca:Noca_2946 hypothetical protein; SPTR: D0WQI8 uncharacterized protein YP_003697119.1 COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR017850:IPR017849:IPR002591; KEGG: bcv:Bcav_1931 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: D0WQI7 type I phosphodiesterase / nucleotide pyrophosphatase family protein; PFAM: type I phosphodiesterase / nucleotide pyrophosphatase YP_003697120.1 COGs: COG1435 thymidine kinase; InterPro IPR001267; KEGG: bcv:Bcav_1932 thymidine kinase; PFAM: thymidine kinase; PRIAM: thymidine kinase; SPTR: D0WQI6 thymidine kinase; PFAM: thymidine kinase YP_003697121.1 KEGG: bcv:Bcav_1933 DNA-binding protein; SPTR: D0WQI5 DNA-binding protein; PFAM: protein of unknown function (DUF3071) YP_003697122.1 KEGG: bcv:Bcav_1935 hypothetical protein; SPTR: D0WQI4 uncharacterized protein YP_003697123.1 KEGG: tfu:Tfu_1934 hypothetical protein; SPTR: D0WQI3 uncharacterized protein; PFAM: protein of unknown function (DUF3710) YP_003697124.1 KEGG: ace:Acel_1194 nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: D0WQI2 nucleic acid binding, OB-fold, tRNA/helicase-type YP_003697125.1 InterPro IPR016566; KEGG: xce:Xcel_1919 hypothetical protein; SPTR: D0WQI0 integral membrane protein; PFAM: protein of unknown function (DUF3159) YP_003697126.1 COGs: COG0569 K+ transporters NAD-binding component; InterPro IPR006036:IPR016040:IPR003148:IPR006037; KEGG: bcv:Bcav_1941 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: D0WQH9 Trk-type K+ transporter, NAD-binding component; PFAM: TrkA-N domain; TrkA-C domain YP_003697127.1 COGs: COG0569 K+ transporters NAD-binding component; InterPro IPR016040:IPR003148:IPR006037; KEGG: jde:Jden_1405 TrkA-N domain protein; PFAM: TrkA-N domain protein; SPTR: D0WQH8 Trk-type K+ transport system, NAD-binding component; PFAM: TrkA-N domain; TrkA-C domain YP_003697128.1 KEGG: tcu:Tcur_1714 aminoacid/polyamine transporter permease; SPTR: D0WQH7 integral membrane protein YP_003697130.1 COGs: COG2189 adenine specific DNA methylase Mod; InterPro IPR002295:IPR002052:IPR002941; KEGG: pct:PC1_0848 site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase N-4/N-6 domain protein; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: C6D9W3 Site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase YP_003697131.1 COGs: COG3587 Restriction endonuclease; InterPro IPR006935; KEGG: bfa:Bfae_05380 restriction endonuclease; PFAM: type III restriction protein res subunit; PRIAM: type III site-specific deoxyribonuclease; SPTR: C7MHJ5 Restriction endonuclease; PFAM: type III restriction enzyme, res subunit YP_003697132.1 COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR014021:IPR000330; KEGG: bfa:Bfae_05330 DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2-related protein; helicase; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C7MHJ1 DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_003697133.1 COGs: COG2801 transposase and inactivated derivatives; InterPro IPR012337:IPR001584:IPR002514; KEGG: cur:cur_1459 transposase for insertion sequence; PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; SPTR: Q8RMK1 transposase subunit B; PFAM: Integrase core domain YP_003697134.1 InterPro IPR002514; KEGG: kse:Ksed_22010 transposase; PFAM: transposase IS3/IS911 family protein; SPTR: C2BM30 ISMyma01 transposase; PFAM: transposase YP_003697135.1 COGs: COG2801 transposase and inactivated derivatives; InterPro IPR012337:IPR001584; KEGG: kse:Ksed_22000 transposase; PFAM: Integrase catalytic region; SPTR: A7B9Y7 uncharacterized protein; PFAM: Integrase core domain YP_003697136.1 InterPro IPR003838; KEGG: cdl:CDR20291_1803 ABC transporter permease; PFAM: protein of unknown function DUF214; SPTR: Q187I6 ABC transporter permease; manually curated; PFAM: Predicted permease YP_003697137.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: cdl:CDR20291_1804 abc transporter atp-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q187I8 ABC transporter ATP-binding protein; PFAM: ABC transporter YP_003697138.1 InterPro IPR003838; KEGG: cdl:CDR20291_1805 ABC transporter permease; PFAM: protein of unknown function DUF214; SPTR: B6FLT8 uncharacterized protein; PFAM: Predicted permease YP_003697139.1 COGs: COG0041 phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: chy:CHY_1069 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; SPTR: Q3AD69 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: AIR carboxylase YP_003697140.1 InterPro IPR002514; KEGG: kse:Ksed_22010 transposase; PFAM: transposase IS3/IS911 family protein; SPTR: C2BM30 ISMyma01 transposase; PFAM: transposase YP_003697141.1 COGs: COG2801 transposase and inactivated derivatives; InterPro IPR012337:IPR001584; KEGG: kse:Ksed_22000 transposase; PFAM: Integrase catalytic region; SPTR: A7B9Y7 uncharacterized protein; PFAM: Integrase core domain YP_003697142.1 COGs: COG1048 Aconitase A; InterProIPR001030:IPR015928:IPR018136:IPR015931:IPR 015932:IPR006249:IPR000573; KEGG: bcv:Bcav_1946 aconitate hydratase 1; PFAM: aconitate hydratase domain protein; SPTR: C0W378 Aconitate hydratase; TIGRFAM: aconitate hydratase 1; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase 1 YP_003697143.1 COGs: COG1154 deoxyxylulose-5-phosphate synthase; InterProIPR009014:IPR000169:IPR005474:IPR015941:IPR 005477:IPR005475:IPR005476; KEGG: xce:Xcel_1898 deoxyxylulose-5-phosphate synthase; PFAM: transketolase; transketolase domain protein; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: D0WQH4 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: dehydrogenase E1 component; transketolase, C-terminal domain; transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_003697144.1 COGs: COG0349 ribonuclease D; InterPro IPR012337:IPR002562:IPR002121; KEGG: bcv:Bcav_1962 3'-5' exonuclease; PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; SPTR: D0WQH3 ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain; TIGRFAM: ribonuclease D YP_003697145.1 KEGG: bcv:Bcav_1965 hypothetical protein; SPTR: D0WQH2 uncharacterized protein; PFAM: protein of unknown function (DUF3000) YP_003697146.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR017853:IPR014756:IPR006589:IPR012768:IPR 013783:IPR013781:IPR004193:IPR006047; KEGG: bcv:Bcav_1971 malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; SPTR: C5C5N5 Malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase, catalytic domain; TIGRFAM: malto-oligosyltrehalose trehalohydrolase YP_003697147.1 COGs: COG3280 Maltooligosyl trehalose synthase; InterProIPR017853:IPR006589:IPR013781:IPR012767:IPR 006047; KEGG: bcv:Bcav_1972 malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C5C5N6 Malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic domain; TIGRFAM: malto-oligosyltrehalose synthase YP_003697148.1 COGs: COG1523 type II secretory pathway pullulanase PulA and related glycosidase; InterProIPR017853:IPR014756:IPR006589:IPR013783:IPR 013781:IPR011837:IPR004193:IPR006047; KEGG: kra:Krad_3073 glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: D0WQH0 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: alpha amylase, catalytic domain; carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: glycogen debranching enzyme GlgX YP_003697149.1 KEGG: hypothetical protein; SPTR: A5P8J2 uncharacterized protein YP_003697150.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: blo:BL1515 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: A7B8S5 uncharacterized protein; manually curated; PFAM: Sulfite exporter TauE/SafE YP_003697151.1 KEGG: xce:Xcel_1937 hypothetical protein; SPTR: D0WM99 respose regulatory protein YP_003697152.1 COGs: COG0370 Fe2+ transporter protein B; InterPro IPR002917:IPR011619:IPR011642:IPR011640; KEGG: xce:Xcel_1938 ferrous iron transporter B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transporter B domain protein; nucleoside recognition domain protein; Ferrous iron transport B domain protein; SPTR: D0WM98 Iron(II) transport protein B; PFAM: Ferrous iron transporter B; Ferrous iron transport protein B C terminus; nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain YP_003697153.1 InterPro IPR011038:IPR012674:IPR015304; KEGG: apr:Apre_0499 YodA domain protein; PFAM: YodA domain protein; SPTR: C7RGD5 YodA domain protein; PFAM: YodA YP_003697154.1 COGs: COG0803 ABC-type metal ion transporter periplasmic component/surface adhesin; InterPro IPR006128:IPR006129:IPR006127; KEGG: fma:FMG_0225 zinc ABC transporter substrate-binding protein; PFAM: periplasmic solute binding protein; SPTR: B0S0A8 Zinc ABC transporter substrate-binding protein; PFAM: Periplasmic solute binding protein family YP_003697155.1 COGs: COG1121 ABC-type Mn/Zn transporters ATPase component; InterPro IPR003593:IPR003439; KEGG: fma:FMG_0226 zinc ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: AAA ATPase; SPTR: C2D875 ABC superfamily ATP binding cassette transporter ABC protein; PFAM: ABC transporter YP_003697156.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transporters permeases; InterPro IPR001626; KEGG: apr:Apre_0502 ABC-3 protein; PFAM: ABC transporter; SPTR: C2BFU5 ABC superfamily ATP binding cassette transporter membrane protein; PFAM: ABC 3 transport family YP_003697157.1 COGs: COG1760 L-serine deaminase; InterPro IPR004644:IPR005131:IPR005130; KEGG: aau:AAur_3830 L-serine ammonia-lyase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; PRIAM: L-serine ammonia-lyase; SPTR: A1RB97 L-serine ammonia-lyase; TIGRFAM: L-serine dehydratase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form YP_003697158.1 COGs: COG0441 threonyl-tRNA synthetase; InterProIPR018158:IPR018163:IPR004154:IPR006195:IPR 002320:IPR012947:IPR002314; KEGG: bfa:Bfae_13900 threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase; PFAM: tRNA synthetase class II (G H P and S); threonyl/alanyl tRNA synthetase SAD; anticodon-binding domain protein; SPTR: D0YSQ6 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: anticodon binding domain; threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: threonyl-tRNA synthetase YP_003697159.1 COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR017871:IPR000462; KEGG: xce:Xcel_1658 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: D0WQG4 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_003697160.1 COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: xce:Xcel_1659 lipid A biosynthesis acyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: D0WQG3 lipid A biosynthesis lauroyl acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase YP_003697161.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: xce:Xcel_1660 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: D0WQG2 phosphatidylinositol alpha-mannosyltransferase; PFAM: glycosyl transferases group 1 YP_003697162.1 KEGG: xce:Xcel_1661 hypothetical protein; SPTR: D0WQG1 uncharacterized protein YP_003697163.1 COGs: COG2339 membrane protein; KEGG: bcv:Bcav_1985 membrane protein; SPTR: C5C5P9 membrane protein YP_003697164.1 InterPro IPR020476:IPR015797:IPR020084:IPR000086; KEGG: bcv:Bcav_1987 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: D0WQF9 MutT/NUDIX family protein; PFAM: NUDIX domain YP_003697165.1 COGs: COG0217 conserved hypothetical protein; InterPro IPR002876:IPR017856; KEGG: ami:Amir_2110 protein of unknown function DUF28; PFAM: protein of unknown function DUF28; SPTR: D0WQF1 protein YebC; PFAM: Domain of unknown function DUF28; TIGRFAM: conserved hypothetical protein TIGR01033 YP_003697166.1 COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR002176:IPR012337:IPR020563; KEGG: xce:Xcel_1666 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: D0WQF0 Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_003697167.1 COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; InterProIPR010994:IPR016027:IPR011114:IPR003583:IPR 012340:IPR000085:IPR013849; KEGG: bcv:Bcav_1993 Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SMART: DNA-binding protein; SPTR: D0WQE9 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, Ruvsubunit alpha YP_003697168.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; InterProIPR008823:IPR003593:IPR011991:IPR004605:IPR 008824:IPR003959; KEGG: bcv:Bcav_1994 Holliday junction DNA helicase RuvB; PFAM: ATPase AAA; Holliday junction DNA helicase RuvB domain; SMART: ATPase AAA; SPTR: D0WQE8 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, Ruvsubunit beta YP_003697169.1 InterPro IPR003849; KEGG: xce:Xcel_1669 preprotein translocase, YajC subunit; PFAM: YajC family protein; SPTR: D0WQE7 preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit YP_003697170.1 COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR005791:IPR003335; KEGG: bcv:Bcav_1996 protein-export membrane protein SecD; SPTR: D0WQE6 protein-export membrane protein SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: MMPL family; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family YP_003697171.1 COGs: COG0341 Preprotein translocase subunit SecF; InterPro IPR003335:IPR005665; KEGG: bcv:Bcav_1997 protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: D0WQE5 protein-export membrane protein SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: protein export membrane protein; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF YP_003697172.1 COGs: COG0503 adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; InterPro IPR000836; KEGG: bcv:Bcav_1998 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: D0WQE4 adenine phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase YP_003697173.1 COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR012676:IPR003607:IPR012675:IPR004811:IPR 006674:IPR007685:IPR004095:IPR002912; KEGG: bcv:Bcav_1999 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain protein; amino acid-binding ACT domain protein; PRIAM: GTP diphosphokinase; SMART: metal-dependent phosphohydrolase HD region; SPTR: D0WQE3 GTP diphosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: HD domain; ACT domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_003697174.1 KEGG: bfa:Bfae_14020 hypothetical protein; SPTR: C7MCC6 uncharacterized protein YP_003697175.1 InterPro IPR007139; KEGG: bcv:Bcav_2001 protein of unknown function DUF349; PFAM: protein of unknown function DUF349; SPTR: C5C5R5 uncharacterized protein; PFAM: Domain of Unknown Function (DUF349) YP_003697176.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: kse:Ksed_15250 Zn-dependent hydrolase, glyoxylase; SPTR: D0WQE0 metallo-beta-lactamase family protein; PFAM: metallo-beta-lactamase superfamily YP_003697177.1 COGs: COG0124 Histidyl-tRNA synthetase; InterProIPR004154:IPR004516:IPR006195:IPR015807:IPR 002314; KEGG: xce:Xcel_1680 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); anticodon-binding domain protein; PRIAM: histidine--tRNA ligase; SPTR: D0WQD9 histidine--tRNA ligase; TIGRFAM: histidyl-tRNA synthetase; PFAM: anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase YP_003697178.1 KEGG: kse:Ksed_08870 hypothetical protein; SPTR: D0WQD8 ATP/GTP-binding protein; PFAM: Dynamin family YP_003697179.1 InterPro IPR002917; KEGG: kse:Ksed_08880 predicted GTPase; PFAM: GTP-binding protein HSR1-related; SPTR: C0W3Q0 ATP/GTP-binding protein; PFAM: GTPase of unknown function YP_003697180.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR000629:IPR014001:IPR001650:IPR014021:IPR 014014:IPR011545:IPR005580; KEGG: jde:Jden_1307 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase; helicase; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: D0WN23 ATP-dependent RNA helicase DeaD; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase YP_003697181.1 InterPro IPR016196:IPR011701; KEGG: xcb:XC_1279 MFS transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C2BTC3 Major facilitator superfamily permease; PFAM: Major Facilitator Superfamily YP_003697182.1 COGs: COG0173 aspartyl-tRNA synthetase; InterProIPR002312:IPR016027:IPR006195:IPR012340:IPR 004524:IPR004365:IPR004364:IPR004115; KEGG: xce:Xcel_1682 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; SPTR: C0W3P3 aspartate--tRNA ligase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_003697183.1 InterPro IPR005490; KEGG: bfa:Bfae_10350 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: C0W945 uncharacterized protein (Fragment); PFAM: peptidoglycan binding domain; L,D-transpeptidase catalytic domain YP_003697184.1 COGs: COG2409 drug exporter of the RND superfamily; InterPro IPR000731; KEGG: bcv:Bcav_2009 integral membrane protein; SPTR: C1RHX7 Predicted RND superfamily drug exporter; PFAM: MMPL family YP_003697185.1 COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: bcv:Bcav_2010 ATPase AAA; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA; SPTR: C1RHX6 recombination protein MgsA; PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus YP_003697186.1 COGs: COG0522 ribosomal protein S4 and related protein; InterPro IPR018079:IPR002942:IPR005709:IPR001912; KEGG: bcv:Bcav_2011 ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; SMART: RNA-binding S4 domain protein; SPTR: D0WN10 ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_003697187.1 COGs: COG0013 Alanyl-tRNA synthetase; InterProIPR018164:IPR018162:IPR018163:IPR018165:IPR 002318:IPR012947:IPR003156; KEGG: xce:Xcel_1689 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; SPTR: D0WN09 alanine--tRNA ligase; TIGRFAM: alanyl-tRNA synthetase; PFAM: DHHA1 domain; threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanyl-tRNA synthetase YP_003697188.1 COGs: COG0816 endonuclease involved in recombination ( Holliday junction resolvase in Mycoplasmas and B. subtilis); InterPro IPR012337:IPR006641:IPR005227; KEGG: bcv:Bcav_2015 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; SPTR: D0WN08 Holliday junction resolvase; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: conserved hypothetical protein TIGR00250 YP_003697189.1 COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: bcv:Bcav_2016 aminodeoxychorismate lyase; PFAM: aminodeoxychorismate lyase; SPTR: C0W3N4 Aminodeoxychorismate lyase; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein TIGR00247 YP_003697190.1 KEGG: gbr:Gbro_2323 shikimate-5-dehydrogenase; SPTR: D0LCP7 shikimate-5-dehydrogenase YP_003697191.1 KEGG: dar:Daro_0637 type 4 prepilin peptidase 1. aspartic peptidase. MEROPS family A24A; SPTR: Q47ID7 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; PFAM: type IV leader peptidase family YP_003697192.1 COGs: COG0082 chorismate synthase; InterPro IPR000453:IPR020541; KEGG: msm:MSMEG_3030 chorismate synthase; PFAM: chorismate synthase; PRIAM: chorismate synthase; SPTR: C0W3N1 chorismate synthase; TIGRFAM: chorismate synthase; manually curated; PFAM: chorismate synthase; TIGRFAM: chorismate synthase YP_003697193.1 COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR000623:IPR016037:IPR002658; KEGG: sgr:SGR_6039 shikimate kinase and 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; shikimate kinase; PRIAM: shikimate kinase., 3-dehydroquinate synthase; SPTR: C9NI27 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; shikimate kinase; TIGRFAM: 3-dehydroquinate synthase YP_003697194.1 KEGG: fal:FRAAL5246 shikimate kinase; SPTR: Q0RF71 shikimate kinase I; PFAM: shikimate kinase YP_003697195.1 COGs: COG0231 translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); InterProIPR008991:IPR016027:IPR013852:IPR020599:IPR 014722:IPR012340:IPR011768:IPR013185:IPR001059:IPR015365; KEGG: kra:Krad_3009 translation elongation factor P; PFAM: Elongation factor KOW domain protein; Elongation factor P/YeiP protein; Elongation factor P; SPTR: C0W1L9 Elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P YP_003697196.1 COGs: COG0781 transcription termination factor; InterPro IPR006027:IPR011605; KEGG: sco:SCO1490 transcription antitermination protein NusB; PFAM: NusB/RsmB/TIM44; SPTR: D0WMZ9 B-like utilization substance protein; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB YP_003697197.1 KEGG: cgb:cg1811 hypothetical protein; SPTR: C2GHU8 Integration host factor YP_003697198.1 COGs: COG0194 Guanylate kinase; InterPro IPR020590:IPR008145:IPR008144:IPR017665; KEGG: krh:KRH_13290 guanylate kinase; PFAM: guanylate kinase; PRIAM: Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; SPTR: D0WMZ4 Guanylate kinase; TIGRFAM: guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_003697199.1 InterPro IPR006110:IPR003716; KEGG: kse:Ksed_12730 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; SPTR: D0WMZ3 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit YP_003697200.1 COGs: COG0452 phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382:IPR007085:IPR005252; KEGG: xce:Xcel_1717 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; PRIAM: phosphopantothenate--cysteine ligase; SPTR: D1BSP8 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic YP_003697201.1 COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: jde:Jden_1315 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: methionine adenosyltransferase; SPTR: D1BH13 methionine adenosyltransferase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase YP_003697202.1 COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; KEGG: tfu:Tfu_1073 primosome assembly protein PriA; SPTR: D0WMZ0 Primosomal protein; TIGRFAM: primosomal protein N'; glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003697203.1 COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376:IPR011034:IPR005793:IPR005794; KEGG: art:Arth_1671 methionyl-tRNA formyltransferase; PFAM: formyl transferase; SPTR: A0JVJ5 Methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_003697204.1 COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR006027:IPR001678; KEGG: jde:Jden_1312 Fmu (Sun) domain protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; SPTR: D0WMY6 ribosomal RNA small subunit methyltransferase B; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB YP_003697205.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR011060:IPR000056:IPR013785; KEGG: bcv:Bcav_2050 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: ribulose-phosphate 3-epimerase; SPTR: D0WMY5 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_003697206.1 COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transporter permease; InterPro IPR000515; KEGG: bcv:Bcav_2051 binding-protein-dependent transporters inner membrane component; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: D0WMX5 ABC transporter permease; PFAM: Binding-protein-dependent transporter inner membrane component YP_003697207.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transporters periplasmic components; InterPro IPR015168; KEGG: bcv:Bcav_2052 NMT1/THI5 like domain protein; PFAM: NMT1/THI5 like domain protein; SPTR: D0WMX4 sulfonate/nitrate/taurine transporter substrate-binding protein; PFAM: NMT1/THI5 like YP_003697208.1 KEGG: bcv:Bcav_2056 protein of unknown function DUF952; SPTR: D0WMX1 uncharacterized protein YP_003697209.1 COGs: COG2378 transcriptional regulator; KEGG: kse:Ksed_13990 predicted transcriptional regulator; SPTR: D0WMX0 uncharacterized protein YP_003697210.1 KEGG: tcu:Tcur_2317 transcriptional regulator-like protein; SPTR: D0WMW9 uncharacterized protein YP_003697211.1 COGs: COG4581 Superfamily II RNA helicase; InterProIPR014001:IPR001650:IPR014021:IPR011545:IPR 012961; KEGG: ace:Acel_1206 DSH domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase; DSH domain protein; SMART: DEAD-like helicase ; helicase; SPTR: D0WMW7 ATP-dependent RNA helicase, DEAD/DEAH box family; PFAM: Helicase conserved C-terminal domain; DSHCT (NUC185) domain; DEAD/DEAH box helicase YP_003697212.1 COGs: COG0815 Apolipoprotein N-acyltransferase; InterPro IPR003010:IPR004563; KEGG: bcv:Bcav_2064 apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: D0WMW6 polyprenol-phosphate-mannosyl transferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase YP_003697213.1 KEGG: bln:Blon_1173 narrowly conserved hypothetical protein; SPTR: D0WMW4 electron transporter YP_003697214.1 InterPro IPR009061:IPR000551; KEGG: bcv:Bcav_2099 MerR family transcriptional regulator; SMART: regulatory protein MerR; SPTR: C5C6E6 MerR family transcriptional regulator YP_003697215.1 InterPro IPR009061:IPR000551; KEGG: bcv:Bcav_2101 MerR family transcriptional regulator; SMART: regulatory protein MerR; SPTR: D0WMW0 Regulatory protein, MerR family YP_003697216.1 COGs: COG1716 FOG: FHA domain; InterPro IPR008984:IPR000253; KEGG: bcv:Bcav_2102 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: D0WMV9 GarA protein; PFAM: FHA domain YP_003697217.1 COGs: COG0308 Aminopeptidase N; InterPro IPR014782:IPR016059:IPR012778; KEGG: kse:Ksed_24070 aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; SPTR: C7NFC1 Aminopeptidase N; TIGRFAM: aminopeptidase N; PFAM: peptidase family M1; Domain of unknown function (DUF3358); TIGRFAM: aminopeptidase N, Streptomyces lividans type YP_003697218.1 COGs: COG1160 GTPase; InterProIPR006073:IPR003593:IPR016484:IPR005225:IPR 002917; KEGG: bcv:Bcav_2148 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: A7BCE2 GTP-binding protein engA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain YP_003697219.1 COGs: COG0283 Cytidylate kinase; InterPro IPR003136:IPR000623:IPR011994; KEGG: jde:Jden_1271 cytidylate kinase; PFAM: cytidylate kinase region; shikimate kinase; SPTR: D0WMU4 prephenate dehydrogenase; TIGRFAM: cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase YP_003697220.1 COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterProIPR020103:IPR018496:IPR002942:IPR000748:IPR 006145; KEGG: bcv:Bcav_2153 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: D0WMU3 ribosomal large subunit pseudouridine synthase B; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase family YP_003697221.1 COGs: COG1386 transcriptional regulator containing the HTH domain; InterPro IPR005234:IPR011991; KEGG: kra:Krad_3121 transcriptional regulator; PFAM: chromosome segregation and condensation protein ScpB; SPTR: D0WMU2 Segregation and condensation protein B; TIGRFAM: segregation and condensation protein B; PFAM: transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B YP_003697222.1 COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: tfu:Tfu_1204 condensin subunit ScpA; PFAM: chromosome segregation and condensation protein ScpA; SPTR: D0WMU1 ScpA/B protein; PFAM: ScpA/B protein YP_003697223.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: bcv:Bcav_2156 cobyrinic acid ac-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; SPTR: C0W1H6 chromosome partitioning protein transcriptional regulator; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_003697224.1 COGs: COG4974 Site-specific recombinase XerD; InterProIPR011010:IPR010998:IPR013762:IPR011932:IPR 004107:IPR002104; KEGG: art:Arth_1521 tyrosine recombinase XerD; PFAM: integrase family protein; integrase; SPTR: C0W3E4 Tyrosine recombinase; TIGRFAM: tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD YP_003697225.1 COGs: COG0021 transketolase; InterProIPR009014:IPR005474:IPR015941:IPR005478:IPR 005475:IPR005476; KEGG: jde:Jden_1264 transketolase; PFAM: transketolase domain protein; transketolase; SPTR: D0WMT7 transketolase; TIGRFAM: transketolase; PFAM: transketolase, thiamine diphosphate binding domain; transketolase, C-terminal domain; transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast YP_003697226.1 InterPro IPR004692; KEGG: cmi:CMM_1741 preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; SPTR: A5CRT4 uncharacterized protein secG; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_003697227.1 COGs: COG0149 triosephosphate isomerase; InterPro IPR000652:IPR020861:IPR013785; KEGG: pac:PPA0818 triosephosphate isomerase; PFAM: triosephosphate isomerase; PRIAM: triose-phosphate isomerase; SPTR: D0WMT3 triose-phosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_003697228.1 COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR001576:IPR015911:IPR015824:IPR015901; KEGG: jde:Jden_1257 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: phosphoglycerate kinase; SPTR: D0WMT2 phosphoglycerate kinase; PFAM: phosphoglycerate kinase YP_003697229.1 COGs: COG0057 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR020832:IPR016040:IPR020830:IPR020831:IPR 006424:IPR020828:IPR020829; KEGG: cdi:DIP1310 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Q6NH35 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase YP_003697230.1 COGs: COG1481 conserved hypothetical protein; InterPro IPR018478:IPR003802; KEGG: bcv:Bcav_2172 protein of unknown function DUF199; PFAM: protein of unknown function DUF199; sporulation regulator WhiA-like; SPTR: D0WMS9 transcriptional regulatory protein whia; PFAM: sporulation Regulator WhiA N terminal; sporulation Regulator WhiA C terminal domain; TIGRFAM: conserved hypothetical protein YP_003697231.1 COGs: COG0391 conserved hypothetical protein; InterPro IPR010119:IPR002882; KEGG: xce:Xcel_1546 protein of unknown function UPF0052 and CofD; PFAM: protein of unknown function UPF0052 and CofD; SPTR: D1BHK9 uncharacterized protein; PFAM: Uncharacterised protein family UPF0052; TIGRFAM: conserved hypothetical protein, cofD-related YP_003697232.1 COGs: COG1660 P-loop-containing kinase; InterPro IPR005337; KEGG: bcv:Bcav_2174 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: D0WMS7 ATP-binding protein; PFAM: P-loop ATPase protein family YP_003697233.1 COGs: COG0178 excinuclease ATPase; InterPro IPR017871:IPR003439:IPR004602; KEGG: bcv:Bcav_2178 excinuclease ABC, A subunit; PFAM: ABC transporter; SPTR: D0WMS5 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; TIGRFAM: excinuclease ABC subunit A YP_003697234.1 InterPro IPR011008:IPR005545; KEGG: bcv:Bcav_2180 YCII-related protein; PFAM: YCII-related; SPTR: D0WMS4 YCII-related domain protein; PFAM: YCII-related domain YP_003697235.1 COGs: COG0861 membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: jde:Jden_1249 integral membrane protein TerC; PFAM: integral membrane protein TerC; SPTR: D0WMS2 protein Alx; manually curated; PFAM: integral membrane protein TerC family YP_003697236.1 COGs: COG0556 Helicase subunit of the DNA excision repair complex; InterProIPR009055:IPR014001:IPR001650:IPR001943:IPR 014021:IPR004807:IPR006935; KEGG: xce:Xcel_1529 excinuclease ABC, B subunit; PFAM: helicase; type III restriction protein res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: D0WMS1 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC subunit B YP_003697237.1 COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: bcv:Bcav_2187 dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: C5BV52 Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_003697238.1 COGs: COG0539 ribosomal protein S1; InterPro IPR000110:IPR016027:IPR003029:IPR012340; KEGG: jde:Jden_1229 RNA binding S1 domain protein; PFAM: RNA binding S1 domain protein; SPTR: D0WMQ6 ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_003697239.1 COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: xce:Xcel_1513 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: D0WMQ5 SAM-dependent methyltransferase; PFAM: methyltransferase domain YP_003697240.1 COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR002298:IPR020045:IPR012337:IPR002421:IPR 008918:IPR001098:IPR018320:IPR020046:IPR020047; KEGG: bcv:Bcav_2200 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; PRIAM: DNA-directed DNA polymerase; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; DNA-directed DNA polymerase; SPTR: D0WMQ4 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: 5'-3' exonuclease, C-terminal SAM fold; DNA polymerase family A; 5'-3' exonuclease, N-terminal resolvase-like domain; TIGRFAM: DNA polymerase I YP_003697241.1 InterPro IPR003736:IPR006683; KEGG: svi:Svir_25970 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: D0WMQ3 thioesterase family protein; PFAM: thioesterase; TIGRFAM: uncharacterized domain 1 YP_003697242.1 COGs: COG3707 Response regulator with antiterminator output domain; InterProIPR011006:IPR001789:IPR008327:IPR005561:IPR 011991; KEGG: bfa:Bfae_14950 response regulator with antiterminator output domain; PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; SPTR: D0WMQ2 Two-component system response regulator; PFAM: Response regulator receiver domain; ANTAR domain YP_003697243.1 COGs: COG0469 pyruvate kinase; InterProIPR015793:IPR015813:IPR015795:IPR011037:IPR 018209:IPR015794:IPR001697; KEGG: bcv:Bcav_2215 pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; PRIAM: pyruvate kinase; SPTR: D0WMQ1 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase, barrel domain; pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase YP_003697244.1 COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: jde:Jden_1218 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: D0WMQ0 Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_003697245.1 InterPro IPR001179; KEGG: bcv:Bcav_2236 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: D0WMP5 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_003697246.1 InterPro IPR004989:IPR004347; KEGG: xce:Xcel_1490 protein of unknown function DUF245 domain protein; PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; SPTR: D0WMP4 Proteasome accessory factor PafA; PFAM: Pup-ligase protein YP_003697247.1 InterPro IPR008515; KEGG: jde:Jden_1203 protein of unknown function DUF797; PFAM: protein of unknown function DUF797; SPTR: C1RK95 uncharacterized protein; PFAM: Pup-like protein YP_003697248.1 InterPro IPR004989:IPR004347; KEGG: bcv:Bcav_2240 protein of unknown function DUF245 domain protein; PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; SPTR: D0WMP2 Proteasome accessory factor PafA2; PFAM: Pup-ligase protein YP_003697249.1 COGs: COG1222 ATP-dependent 26S proteasome regulatory subunit; InterPro IPR003960:IPR003593:IPR003959; KEGG: xce:Xcel_1485 ATPase AAA central domain protein; PFAM: ATPase AAA; SMART: AAA ATPase; SPTR: C1RM61 ATP-dependent 26S proteasome regulatory subunit; PFAM: ATPase family associated with various cellular activities (AAA) YP_003697250.1 COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase; InterPro IPR014816; KEGG: bcv:Bcav_2243 tRNA methyltransferase complex GCD14 subunit; PFAM: tRNA methyltransferase complex GCD14 subunit; PRIAM: tRNA (adenine-N(1)-)-methyltransferase; SPTR: D0WMP0 SAM-dependent methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit YP_003697251.1 COGs: COG2887 RecB family exonuclease; KEGG: sco:SCO1653 hypothetical protein; SPTR: D0WMN9 RecB family exonuclease; PFAM: protein of unknown function (DUF2800) YP_003697252.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402:IPR005834; KEGG: kse:Ksed_13910 haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having dd or ED; PFAM: haloacid dehalogenase; SPTR: C7NHR1 Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_003697253.1 COGs: COG1968 Uncharacterized bacitracin resistance protein; InterPro IPR003824; KEGG: mlu:Mlut_11800 undecaprenyl-diphosphatase; PFAM: bacitracin resistance protein BacA; SPTR: D0WMN7 undecaprenyl-diphosphatase UppP; TIGRFAM: undecaprenol kinase; PFAM: bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_003697254.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: xce:Xcel_1477 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: D1BS15 Aldo/keto reductase; PFAM: Aldo/keto reductase family YP_003697255.1 InterPro IPR018532; KEGG: bde:BDP_1345 conserved hypothetical secreted protein; PFAM: Domain of unknown function DUF1994; SPTR: C0W3G0 Possible secreted protein; PFAM: Uncharacterized conserved protein (DUF2081); Domain of unknown function (DUF1994) YP_003697256.1 KEGG: bcv:Bcav_2251 hypothetical protein; SPTR: D0WMN5 uncharacterized protein YP_003697257.1 COGs: COG0169 shikimate 5-dehydrogenase; InterPro IPR016040:IPR011342:IPR013708:IPR006151; KEGG: shi:Shel_06560 shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; SPTR: D0WNH9 shikimate dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain; shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase YP_003697258.1 InterPro IPR013823; KEGG: ckr:CKR_2548 hypothetical protein; SPTR: C1IBK7 uncharacterized protein; PFAM: ribosomal protein L7/L12 C-terminal domain YP_003697259.1 InterPro IPR019229; KEGG: nml:Namu_3760 MazG nucleotide pyrophosphohydrolase; PFAM: protein of unknown function DUF2166; SPTR: D0WMM4 acetyltransferase family protein; PFAM: phosphoribosyl-ATP pyrophosphohydrolase YP_003697260.1 KEGG: cbf:CLI_2525 hypothetical protein; SPTR: C3L0G7 membrane protein YP_003697261.1 KEGG: bfa:Bfae_27750 hypothetical protein; SPTR: D0WMM3 uncharacterized protein YP_003697262.1 COGs: COG0219 rRNA methylase (SpoU class); InterPro IPR016914:IPR001537; KEGG: krh:KRH_08750 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: B2GL46 RNA methyltransferase; PFAM: SpoU rRNA methylase family; TIGRFAM: rRNA methylase, , group 2 YP_003697263.1 InterPro IPR010982:IPR001387; KEGG: xce:Xcel_0778 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: D0WML6 DNA-binding protein; PFAM: Helix-turn-helix YP_003697264.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: krh:KRH_12470 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: C0W340 rRNA methyltransferase; PFAM: SpoU rRNA methylase family YP_003697265.1 COGs: COG0330 membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001972:IPR018080:IPR001107; KEGG: bcv:Bcav_2313 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: D0WML4 Band 7 protein; PFAM: SPFH domain / Band 7 family YP_003697266.1 COGs: COG1585 membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: jde:Jden_1178 protein of unknown function DUF107; PFAM: protein of unknown function DUF107; SPTR: D0WML2 integral membrane protein; PFAM: NfeD-like YP_003697267.1 COGs: COG1119 ABC-type molybdenum transporter ATPase component/photorepair protein PhrA; InterPro IPR017871:IPR003593:IPR003439; KEGG: jde:Jden_1177 ABC transporter related; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: D0WML1 ABC transporter ATP-binding protein; PFAM: ABC transporter YP_003697268.1 COGs: COG0438 glycosyltransferase; InterPro IPR019793:IPR011875:IPR001296; KEGG: bcv:Bcav_2317 glycogen synthase; PFAM: glycosyl transferase group 1; SPTR: D0WML0 glycogen synthase; TIGRFAM: glycogen synthase; PFAM: glycosyl transferases group 1; TIGRFAM: glycogen synthase, Corynebacterium family YP_003697269.1 COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR011004:IPR005836:IPR011831:IPR005835; KEGG: bcv:Bcav_2318 glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase; PRIAM: glucose-1-phosphate adenylyltransferase; SPTR: D0WMK9 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; manually curated; PFAM: nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase YP_003697270.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR017871:IPR003593:IPR003439; KEGG: bcv:Bcav_2326 ABC transporter; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: D0WMK2 ABC transporter ATP-binding protein; PFAM: ABC transporter YP_003697271.1 COGs: COG2321 metalloprotease; InterPro IPR007343; KEGG: bcv:Bcav_2331 protein of unknown function zinc metallopeptidase PFAM: protein of unknown function zinc metallopeptidase SPTR: D0WMK1 metallopeptidase, zinc binding; PFAM: neutral zinc metallopeptidase YP_003697272.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744; KEGG: ace:Acel_1140 hypothetical protein; PFAM: protein of unknown function DUF59; SPTR: A3TLB3 uncharacterized protein; PFAM: Domain of unknown function DUF59 YP_003697273.1 COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR011341:IPR002871; KEGG: blt:Balat_0915 hypothetical protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: D0WMJ9 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family YP_003697274.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR015424:IPR015421:IPR010970:IPR000192; KEGG: xce:Xcel_1361 cysteine desulfurase SufS; PFAM: aminotransferase class V; SPTR: D0WMJ8 Cysteine desulfurase SufS; TIGRFAM: cysteine desulfurase SufS; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily YP_003697275.1 COGs: COG0396 ABC-type transporter involved in Fe-S cluster assembly ATPase component; InterPro IPR003593:IPR003439:IPR010230; KEGG: jde:Jden_1143 FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: C0VZ94 ABC superfamily ATP binding cassette transporter ABC protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_003697276.1 COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; InterPro IPR017941; KEGG: bcv:Bcav_2338 Rieske (2Fe-2S) domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: C1RHU4 Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase; PFAM: Rieske [2Fe-2S] domain YP_003697277.1 COGs: COG0719 ABC-type transporter involved in Fe-S cluster assembly permease; InterPro IPR011542:IPR000825; KEGG: bcv:Bcav_2339 FeS assembly protein SufD; PFAM: SufBD protein; SPTR: A7BC52 uncharacterized protein; TIGRFAM: FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1 YP_003697278.1 COGs: COG0719 ABC-type transporter involved in Fe-S cluster assembly permease; InterPro IPR010231:IPR000825; KEGG: bcv:Bcav_2340 FeS assembly protein SufB; PFAM: SufBD protein; SPTR: C5BVZ0 FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB YP_003697279.1 COGs: COG2345 transcriptional regulator; InterPro IPR001845; KEGG: jde:Jden_1139 transcriptional regulator; PFAM: regulatory protein ArsR; SPTR: D0WMJ3 DNA-binding transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family YP_003697280.1 InterPro IPR015797:IPR000086; KEGG: xce:Xcel_1348 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: D0WMJ2 MutT/NUDIX family protein; PFAM: NUDIX domain YP_003697281.1 COGs: COG0728 membrane protein virulence factor; InterPro IPR004268:IPR017441; KEGG: bcv:Bcav_2351 virulence factor MviN family protein; PFAM: virulence factor MVIN family protein; SPTR: D0WMJ1 integral membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN YP_003697282.1 KEGG: xce:Xcel_1345 hypothetical protein; SPTR: D0WMJ0 uncharacterized protein YP_003697283.1 KEGG: kra:Krad_3145 hypothetical protein; SPTR: D0WMI9 uncharacterized protein; PFAM: protein of unknown function (DUF3186) YP_003697284.1 COGs: COG4825 Uncharacterized membrane-anchored protein; InterPro IPR007371; KEGG: bcv:Bcav_2354 thiamin pyrophosphokinase catalytic region; PFAM: Thiamin pyrophosphokinase catalytic region; SPTR: D0WMI8 Thiamin pyrophosphokinase, catalytic domain protein; PFAM: thiamine pyrophosphokinase C terminal; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase YP_003697285.1 COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604:IPR003395; KEGG: rmu:RMDY18_14060 ATPase involved in DNA repair; PFAM: SMC domain protein; SPTR: D0WMI7 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_003697286.1 COGs: COG0061 sugar kinase; InterPro IPR016064:IPR017437:IPR002504; KEGG: bcv:Bcav_2356 ATP-NAD/AcoX kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: D0WMI6 ATP-NAD kinase; PFAM: ATP-NAD kinase YP_003697287.1 COGs: COG1189 rRNA methylase; InterPro IPR002942:IPR004538:IPR002877; KEGG: kra:Krad_3149 hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein; SPTR: A7BC42 uncharacterized protein; TIGRFAM: hemolysin A; PFAM: S4 domain; FtsJ-like methyltransferase; TIGRFAM: hemolysin TlyA family protein YP_003697289.1 COGs: COG0647 sugar phosphatase of the HAD superfamily; InterPro IPR006357:IPR005834; KEGG: xce:Xcel_1338 HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C1RHW4 Predicted sugar phosphatase of HAD superfamily (Fragment); TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid Dehalogenase Superfamily class (subfamily) IIA YP_003697290.1 KEGG: jde:Jden_1121 hypothetical protein; SPTR: C7R3S0 uncharacterized protein YP_003697291.1 COGs: COG0162 Tyrosyl-tRNA synthetase; InterPro IPR002307:IPR002942:IPR014729:IPR002305; KEGG: xce:Xcel_1336 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; PRIAM: Tyrosine--tRNA ligase; SPTR: C0W7M8 Tyrosine--tRNA ligase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_003697292.1 COGs: COG3949 Uncharacterized membrane protein; KEGG: cdi:DIP0870 hypothetical protein; SPTR: Q8NRF4 Hypothetical membrane protein YP_003697293.1 COGs: COG0778 nitroreductase; InterPro IPR000415:IPR016446; KEGG: cdi:DIP0265 nitroreductase; PFAM: nitroreductase; SPTR: Q6NJX6 nitroreductase; PFAM: nitroreductase family YP_003697294.1 COGs: COG1438 Arginine repressor; InterPro IPR001669:IPR011991; KEGG: kse:Ksed_10120 transcriptional regulator, ArgR family; PFAM: arginine repressor; SPTR: D0WQD6 Arginine repressor; TIGRFAM: arginine repressor; PFAM: Arginine repressor, C-terminal domain; Arginine repressor, DNA binding domain; TIGRFAM: arginine repressor YP_003697295.1 COGs: COG4992 ornithine/acetylornithine aminotransferase; InterPro IPR015424:IPR015421:IPR005814; KEGG: tcu:Tcur_2154 acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; SPTR: D1A1N2 acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III YP_003697296.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR016040:IPR002198:IPR002347; KEGG: bcv:Bcav_2376 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: D0WN30 L-xylulose reductase; PFAM: short chain dehydrogenase YP_003697297.1 COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR020825:IPR005121:IPR016027:IPR009061:IPR 004532:IPR002547:IPR012340:IPR005147:IPR005146; KEGG: jde:Jden_1109 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/4 domain protein; t-RNA-binding domain protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; SPTR: D0WN31 Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase subunit beta; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial YP_003697298.1 COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; InterProIPR010978:IPR004529:IPR006195:IPR004188:IPR 002319; KEGG: jde:Jden_1108 phenylalanyl-tRNA synthetase subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; SPTR: D0WN32 Phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase subunit alpha; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase subunit alpha YP_003697299.1 KEGG: late embryogenesis abundant protein, / LEA protein, SPTR: Q1XI26 PvLEA1 protein YP_003697300.1 COGs: COG0329 dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR020625:IPR013785:IPR002220; KEGG: ckp:ckrop_1871 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: C0W1Z6 Possible dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase family YP_003697301.1 COGs: COG1123 ATPase components of various ABC-type transporters contain duplicated ATPase; InterPro IPR003439:IPR017871:IPR003593:IPR013563; KEGG: apv:Apar_0932 ABC transporter related; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; SPTR: A7BBZ2 uncharacterized protein; PFAM: ABC transporter; oligopeptide/dipeptide transporter C-terminal region YP_003697302.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transporter ATPase component; InterProIPR010066:IPR003439:IPR000515:IPR017871:IPR 003593:IPR013563; KEGG: ele:Elen_2148 oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; binding-protein-dependent transporters inner membrane component; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; SPTR: A7BBZ1 uncharacterized protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component; oligopeptide/dipeptide transporter C-terminal region YP_003697303.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transporters permeases; InterPro IPR000515; KEGG: ele:Elen_2147 binding-protein-dependent transporters inner membrane component; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: C2GJT1 ABC superfamily ATP binding cassette transporter membrane protein; PFAM: Binding-protein-dependent transporter inner membrane component YP_003697304.1 COGs: COG0747 ABC-type dipeptide transporter periplasmic component; InterPro IPR000914; KEGG: ccu:Ccur_06680 ABC-type dipeptide transporter, periplasmic component; PFAM: extracellular solute-binding protein family 5; SPTR: A7BBY9 uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003697305.1 COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537; KEGG: xce:Xcel_1319 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: D0WN38 23S rRNA methyltransferase; PFAM: SpoU rRNA methylase family YP_003697306.1 COGs: COG0292 ribosomal protein L20; InterPro IPR005813; KEGG: xce:Xcel_1318 ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: D0WN39 ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_003697307.1 InterPro IPR001706:IPR018265; KEGG: jde:Jden_1104 ribosomal protein L35; PFAM: ribosomal protein L35; SPTR: C7R3Q3 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_003697308.1 COGs: COG0290 translation initiation factor 3 (IF-3); InterPro IPR019815:IPR019814:IPR001288:IPR019813; KEGG: jde:Jden_1103 translation initiation factor IF-3; PFAM: translation initiation factor 3-like; SPTR: D0WN41 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: translation initiation factor IF-3, C-terminal domain; translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3 YP_003697309.1 KEGG: jde:Jden_1097 hypothetical protein; SPTR: D0WN42 uncharacterized protein YP_003697310.1 KEGG: bcv:Bcav_2391 hypothetical protein; SPTR: D0WN44 uncharacterized protein YP_003697311.1 COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: msm:MSMEG_1942 integral membrane protein; PFAM: protein of unknown function DUF125 transmembrane; SPTR: B5GGH5 uncharacterized protein; PFAM: VIT family YP_003697312.1 COGs: COG0020 undecaprenyl pyrophosphate synthase; InterPro IPR001441:IPR018520; KEGG: ach:Achl_1961 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: C1RP29 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_003697313.1 COGs: COG1381 recombinational DNA repair protein (RecF pathway); InterPro IPR003717; KEGG: xce:Xcel_2177 DNA repair protein RecO; PFAM: recombination protein O RecO; SPTR: D1BUV6 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: recombination protein O C terminal; recombination protein O N terminal; TIGRFAM: DNA repair protein RecO YP_003697314.1 COGs: COG1159 GTPase; InterProIPR009019:IPR005225:IPR005662:IPR004044:IPR 015946:IPR002917; KEGG: kse:Ksed_11760 GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; SPTR: A7BE67 uncharacterized protein; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain YP_003697315.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR005170; KEGG: xce:Xcel_2186 hypothetical protein; PFAM: hypothetical protein; transporter-associated region; SMART: hypothetical protein; SPTR: D0WN55 integral membrane transporter with CBS domain; PFAM: CBS domain; transporter associated domain YP_003697316.1 COGs: COG0319 metal-dependent hydrolase; InterPro IPR002036:IPR020549; KEGG: kra:Krad_3386 protein of unknown function UPF0054; PFAM: protein of unknown function UPF0054; SPTR: D0WN56 metalloprotease; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: conserved hypothetical protein TIGR00043 YP_003697317.1 COGs: COG1702 phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: bcv:Bcav_1750 PhoH family protein; PFAM: PhoH family protein; SPTR: D0WN57 PhoH family protein; PFAM: PhoH-like protein YP_003697318.1 COGs: COG1385 conserved hypothetical protein; InterPro IPR015947:IPR006700; KEGG: jde:Jden_1548 protein of unknown function DUF558; PFAM: protein of unknown function DUF558; SPTR: C7R526 uncharacterized protein; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family YP_003697319.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR001623:IPR008971:IPR001305:IPR012724:IPR 018253:IPR002939:IPR003095; KEGG: jde:Jden_1549 chaperone DnaJ domain protein; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: D0WN59 Chaperone protein DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ YP_003697320.1 COGs: COG1420 transcriptional regulator of heat shock gene; InterPro IPR002571:IPR011991:IPR001034; KEGG: bcv:Bcav_1748 heat-inducible transcription repressor HrcA; PFAM: negative regulator of class I heat shock protein; regulatory protein DeoR; SPTR: D0WN60 transcription repressor HrcA; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: DeoR-like helix-turn-helix domain; HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA YP_003697321.1 KEGG: ngk:NGK_0895 trafficking protein B; SPTR: C2CT09 PilT protein domain protein; PFAM: PIN domain YP_003697322.1 KEGG: hypothetical protein; SPTR: C1FFK9 Predicted protein YP_003697323.1 KEGG: aau:AAur_2236 hypothetical protein; SPTR: D0WN61 uncharacterized protein; PFAM: protein of unknown function (DUF3097) YP_003697324.1 KEGG: nca:Noca_3265 hypothetical protein; SPTR: A1SLT2 uncharacterized protein YP_003697325.1 COGs: COG0635 coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterProIPR004559:IPR013785:IPR006638:IPR007197:IPR 010723; KEGG: cms:CMS_1742 coproporphyrinogen III oxidase; PFAM: HemN domain protein; radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: D0WN64 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase YP_003697326.1 COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; InterPro IPR003358; KEGG: kse:Ksed_11630 tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; SPTR: D0WN65 tRNA (Guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase YP_003697327.1 COGs: COG0481 membrane GTPase LepA; InterProIPR009000:IPR009022:IPR005225:IPR006297:IPR 000795:IPR000640:IPR004161:IPR013842; KEGG: bcv:Bcav_1744 GTP-binding protein LepA; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; SPTR: D0WN67 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain YP_003697328.1 KEGG: hypothetical protein; K01533 Cu2+-exporting ATPase; SPTR: D0WN68 uncharacterized protein YP_003697329.1 InterPro IPR005182; KEGG: nfa:nfa9960 hypothetical protein; PFAM: membrane-flanked domain; SPTR: D0WN69 Bacterial membrane flanked domain protein; manually curated; PFAM: Bacterial membrane flanked domain YP_003697330.1 InterPro IPR011067; KEGG: nca:Noca_3690 hypothetical protein; SPTR: C0W2Y2 uncharacterized protein; PFAM: PemK-like protein YP_003697331.1 InterPro IPR002583; KEGG: bcv:Bcav_1740 ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: D0WN72 ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; TIGRFAM: ribosomal protein S20 YP_003697332.1 COGs: COG1282 NAD/NADP transhydrogenase beta subunit; InterPro IPR012136:IPR004003; KEGG: shi:Shel_24220 NAD/NADP transhydrogenase subunit beta; PFAM: NAD(P) transhydrogenase beta subunit; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: C7N1Y9 NAD/NADP transhydrogenase subunit beta; PFAM: NAD(P) transhydrogenase subunit beta YP_003697333.1 COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; InterProIPR016040:IPR004571:IPR008143:IPR007886:IPR 007698; KEGG: cur:cur_1513 NAD(P) transhydrogenase subunit alpha; PFAM: alanine dehydrogenase/PNT domain protein; SPTR: D0WN83 NAD(P)(+) transhydrogenase, subunit alpha; TIGRFAM: NAD(P) transhydrogenase, subunit alpha; PFAM: alanine dehydrogenase/PNT, C-terminal domain; alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: NAD(P) transhydrogenase, subunit alpha YP_003697334.1 COGs: COG1466 DNA polymerase III subunit delta; InterPro IPR008921:IPR005790:IPR010372; KEGG: bcv:Bcav_1739 DNA polymerase III delta subunit; PFAM: DNA polymerase III delta; SPTR: C0W2X5 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III subunit delta YP_003697335.1 COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: jde:Jden_1561 ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; SPTR: C0W2X3 Possible ComEC operon protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein YP_003697336.1 COGs: COG1555 DNA uptake protein and related DNA-binding protein; InterProIPR010994:IPR004509:IPR003583:IPR019554:IPR 000445; KEGG: bcv:Bcav_1737 competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; helix-hairpin-helix motif; SMART: DNA-binding protein; SPTR: C5C480 Competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: SLBB domain; Helix-hairpin-helix motif; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; comEA protein YP_003697337.1 COGs: COG0433 ATPase; InterPro IPR008571; KEGG: bcv:Bcav_1736 protein of unknown function DUF853 NPT hydrolase PFAM: protein of unknown function DUF853 NPT hydrolase SPTR: D0WN89 ATP-binding protein; PFAM: Bacterial protein of unknown function (DUF853) YP_003697338.1 COGs: COG2017 Galactose mutarotase; InterPro IPR011013:IPR014718:IPR008183; KEGG: ara:Arad_14113 aldose epimerase; PFAM: aldose 1-epimerase; SPTR: D0WN90 aldose epimerase; PFAM: aldose 1-epimerase YP_003697339.1 COGs: COG0495 leucyl-tRNA synthetase; InterProIPR009008:IPR009080:IPR002302:IPR001412:IPR 014729:IPR002300:IPR013155; KEGG: bcv:Bcav_1730 leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; aminoacyl-tRNA synthetase class Ia; SPTR: D0WN91 Leucine--tRNA ligase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); tRNA synthetases class I (M); anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family YP_003697340.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR011146:IPR001310:IPR011151; KEGG: rha:RHA1_ro04743 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: C2BUY1 histidine triad (HIT) protein; PFAM: HIT domain YP_003697341.1 COGs: COG4243 membrane protein; InterPro IPR012932; KEGG: bcv:Bcav_1719 vitamin K epoxide reductase; PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; SPTR: D0WN93 Vitamin K epoxide reductase; PFAM: Vitamin K epoxide reductase family YP_003697342.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR006379:IPR013200; KEGG: bcv:Bcav_1662 hypothetical protein; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: D0WN94 HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Eukaryotic phosphomannomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB YP_003697343.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: xce:Xcel_2637 protein of unknown function UPF0118; PFAM: protein of unknown function UPF0118; SPTR: D1BX83 uncharacterized protein; PFAM: Domain of unknown function DUF20 YP_003697344.1 COGs: COG0813 Purine-nucleoside phosphorylase; InterPro IPR000845; KEGG: kse:Ksed_10970 purine-nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: C0W1W4 Purine nucleoside phosphorylase; PFAM: phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD) YP_003697345.1 COGs: COG1135 ABC-type metal ion transporter ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: bfa:Bfae_03410 ABC-type metal ion transporter, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: D0WN99 D-methionine ABC transporter ATP-binding protein; PFAM: ABC transporter YP_003697346.1 COGs: COG2011 ABC-type metal ion transporter permease; InterPro IPR000515; KEGG: vsp:VS_2383 probable D-methionine transporter permease MetI; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: C2BTH7 metal ion ABC superfamily ATP binding cassette transporter membrane protein; PFAM: Binding-protein-dependent transporter inner membrane component YP_003697347.1 COGs: COG1464 ABC-type metal ion transporter periplasmic component/surface antigen; InterPro IPR004872; KEGG: rsa:RSal33209_1229 ABC transporter substrate-binding protein; PFAM: NLPA lipoprotein; SPTR: D0WNA1 methionine ABC transporter periplasmic methionine-binding protein; PFAM: NLPA lipoprotein; TIGRFAM: lipoprotein, YaeC family YP_003697349.1 COGs: COG0591 Na+/proline symporter; InterPro IPR011851:IPR019900:IPR001734:IPR018212; KEGG: krh:KRH_05020 sodium/proline symporter; PFAM: Na+/solute symporter; SPTR: C0W231 SSS family proline:sodium (Na+) symporter OpuE; TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily YP_003697350.1 COGs: COG1593 TRAP-type C4-dicarboxylate transporter large permease; InterPro IPR004681:IPR010656; KEGG: cef:CE2239 C4-dicarboxylate permease large protein; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; SPTR: Q8FNA6 C4-dicarboxylate permease large protein; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter DctM subunit YP_003697351.1 COGs: COG3090 TRAP-type C4-dicarboxylate transporter small permease; InterPro IPR007387; KEGG: cef:CE2240 C4-dicarboxylate permease small protein; PFAM: tripartite ATP-independent periplasmic transporter DctQ component; SPTR: Q8FNA5 C4-dicarboxylate permease small protein; PFAM: tripartite ATP-independent periplasmic transporters, DctQ component YP_003697352.1 COGs: COG1638 TRAP-type C4-dicarboxylate transporter periplasmic component; InterPro IPR004682:IPR018389; KEGG: cgt:cgR_2222 hypothetical protein; PFAM: extracellular solute-binding protein, family 7; SPTR: D0YQL8 C4-dicarboxylate transporter C4-dicarboxylate-binding protein; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family YP_003697353.1 COGs: COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase); InterPro IPR016125:IPR000816; KEGG: krh:KRH_07020 pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I; PRIAM: Pyroglutamyl-peptidase I; SPTR: B2GJM0 pyrrolidone-carboxylate peptidase; PFAM: Pyroglutamyl peptidase; TIGRFAM: pyroglutamyl-peptidase I YP_003697354.1 InterPro IPR000209:IPR003137:IPR010435; KEGG: bfa:Bfae_23940 subtilisin-like serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; protein of unknown function DUF1034; SPTR: C7MFG9 Subtilisin-like serine protease; PFAM: PA domain; Fn3-like domain (DUF1034); Subtilase family YP_003697355.1 KEGG: cdi:DIP2140 integral membrane protein; SPTR: Q6NEW9 integral membrane protein; manually curated YP_003697356.1 InterPro IPR000073; KEGG: cdi:DIP2139 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: Q6NEX0 uncharacterized protein; PFAM: alpha/beta hydrolase fold YP_003697357.1 COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR016027:IPR002313:IPR006195:IPR012340:IPR 007424:IPR007425:IPR007426:IPR004365:IPR004364:IPR018149; KEGG: cdi:DIP2138 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: lysine--tRNA ligase; SPTR: Q6NEX1 Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: Uncharacterized conserved protein (DUF2156); tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_003697358.1 COGs: COG0540 aspartate carbamoyltransferase catalytic chain; InterPro IPR006130:IPR002082:IPR006132:IPR006131; KEGG: cpf:CPF_1387 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; SPTR: C2KYS1 aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; aspartate carbamoyltransferase regulatory chain, metal binding domain; TIGRFAM: aspartate carbamoyltransferase YP_003697359.1 COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR004467:IPR000836; KEGG: bay:RBAM_015390 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: B9Y746 uncharacterized protein; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase YP_003697360.1 COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterProIPR011060:IPR014732:IPR018089:IPR013785:IPR 001754; KEGG: ssp:SSP1568 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: C7GD17 Orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 1 YP_003697361.1 COGs: COG0167 dihydroorotate dehydrogenase; InterPro IPR005720:IPR012135:IPR001295:IPR013785; KEGG: gtn:GTNG_1011 dihydroorotate dehydrogenase 1B; PFAM: dihydroorotate oxidase; SPTR: C2KYS4 dihydroorotate oxidase; TIGRFAM: dihydroorotate dehydrogenase; PFAM: dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein YP_003697362.1 COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterProIPR017938:IPR012165:IPR017927:IPR008333:IPR 001433:IPR019480:IPR001834; KEGG: oih:OB1492 dihydroorotate dehydrogenase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: B0MVE6 uncharacterized protein; PFAM: oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; oxidoreductase NAD-binding domain YP_003697363.1 COGs: COG0458 carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR016185:IPR005480:IPR006275:IPR011761:IPR 005479:IPR013817:IPR013816:IPR005481:IPR011607:IPR005483; KEGG: gwc:GWCH70_1047 carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; SPTR: B6FK85 uncharacterized protein; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; carbamoyl-phosphate synthetase large chain, oligomerisation domain; carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit YP_003697364.1 COGs: COG0044 dihydroorotase and related cyclic amidohydrolase; InterPro IPR011059:IPR004722:IPR002195:IPR006680; KEGG: bcl:ABC2335 dihydroorotase; PFAM: amidohydrolase; SPTR: B0MVE2 dihydroorotase; TIGRFAM: dihydroorotase; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase YP_003697366.1 KEGG: pac:PPA1874 hypothetical protein; SPTR: D0YU73 uncharacterized protein YP_003697367.1 COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461; KEGG: kse:Ksed_07900 Na+/H+ antiporter; PFAM: Na+/H+ antiporter NhaC-like; SPTR: C7NF22 Na+/H+ antiporter; PFAM: Na+/H+ antiporter family YP_003697368.1 COGs: COG0254 ribosomal protein L31; InterPro IPR002150; KEGG: sco:SCO3427 50S ribosomal protein L31 type B; PFAM: ribosomal protein L31; SPTR: Q9X8K6 50S ribosomal protein L31 type B 2; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_003697369.1 COGs: COG0657 esterase/lipase; InterPro IPR013094; KEGG: cro:ROD_05341 acetyl esterase; PFAM: alpha/beta hydrolase; SPTR: D0WP07 acetyl esterase; PFAM: alpha/beta hydrolase fold YP_003697370.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR004638:IPR011701:IPR001411; KEGG: krh:KRH_22170 drug resistance efflux protein; PFAM: major facilitator superfamily MFS_1; SPTR: B2GIE2 Drug resistance efflux protein; TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter EmrB/QacA subfamily YP_003697371.1 InterPro IPR009057:IPR001647:IPR012287; KEGG: mrd:Mrad2831_5885 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: B1M8J9 TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_003697372.1 COGs: COG0239 integral membrane protein possibly involved in chromosome condensation; InterPro IPR003691; KEGG: krh:KRH_08330 chromosome condensation/camphor resistance protein CrcB; PFAM: Camphor resistance CrcB protein; SPTR: B2GKQ1 protein crcB homolog; PFAM: CrcB-like protein; TIGRFAM: crcB protein YP_003697373.1 COGs: COG0239 integral membrane protein possibly involved in chromosome condensation; InterPro IPR003691; KEGG: gvi:gll2211 hypothetical protein; PFAM: Camphor resistance CrcB protein; SPTR: C2M9C5 protein crcB homolog; PFAM: CrcB-like protein YP_003697374.1 COGs: COG0586 membrane-associated protein; InterPro IPR010916:IPR015414; KEGG: car:cauri_1244 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: C3PG83 membrane protein; PFAM: SNARE associated Golgi protein YP_003697375.1 COGs: COG0659 sulfate permease and related transporter (MFS superfamily); InterPro IPR002645:IPR006162:IPR011547; KEGG: gbr:Gbro_3908 sulfate transporter; PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; SPTR: D0L3T1 Sulphate transporter; PFAM: sulfate transporter family; STAS domain; TIGRFAM: high affinity sulfate transporter 1 YP_003697376.1 InterPro IPR008979:IPR019931; KEGG: amr:AM1_0150 hypothetical protein; SPTR: A7B9K1 uncharacterized protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003697377.1 KEGG: fma:FMG_0910 hypothetical protein; SPTR: B0S1T8 uncharacterized protein YP_003697378.1 InterPro IPR002525:IPR003346; KEGG: mlu:Mlut_12160 transposase; PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; SPTR: C0W956 transposase, IS111A/IS1328/IS1533 (Fragment); PFAM: transposase IS116/IS110/IS902 family; transposase YP_003697379.1 KEGG: pac:PPA1589 hypothetical protein; SPTR: C2KNY1 uncharacterized protein YP_003697380.1 KEGG: nfa:pnf1680 hypothetical protein; SPTR: Q5YMJ7 uncharacterized protein YP_003697381.1 KEGG: SORBIDRAFT_07g023145; hypothetical protein; SPTR: C5YML5 uncharacterized protein Sb07g023145 (Fragment) YP_003697382.1 KEGG: mjl:Mjls_5646 hypothetical protein; SPTR: A7VN81 uncharacterized protein YP_003697383.1 COGs: COG4823 Abortive infection bacteriophage resistance protein; InterPro IPR011664; KEGG: cdi:DIP2155 hypothetical protein; PFAM: Abi family protein; SPTR: Q6NEV8 uncharacterized protein; manually curated; PFAM: Abi-like protein YP_003697384.1 KEGG: rsq:Rsph17025_1504 RND family efflux transporter MFP subunit; SPTR: D0YUX9 uncharacterized protein YP_003697385.1 COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: bpt:Bpet3989 type I restriction-modification system, S subunit; PFAM: restriction modification system DNA specificity domain; SPTR: A9I6S0 type I restriction-modification system, S subunit; manually curated; PFAM: type I restriction modification DNA specificity domain YP_003697386.1 COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: vei:Veis_1015 restriction modification system DNA specificity subunit; PFAM: restriction modification system DNA specificity domain; SPTR: B2N0G8 type I restriction-modification system, S subunit; PFAM: type I restriction modification DNA specificity domain YP_003697387.1 COGs: COG0286 type I restriction-modification system methyltransferase subunit; InterPro IPR002052:IPR003356:IPR002296; KEGG: apa:APP7_1530 type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; SPTR: B3H2F7 type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; HsdM N-terminal domain YP_003697388.1 COGs: COG4096 type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterProIPR014021:IPR001650:IPR014001:IPR007409:IPR 006935:IPR013670; KEGG: pnu:Pnuc_1134 EcoEI R domain-containing protein; PFAM: EcoEI R domain protein; type III restriction protein res subunit; protein of unknown function DUF450; helicase; PRIAM: type I site-specific deoxyribonuclease; SMART: DEAD-like helicase; SPTR: A4SXY6 EcoEI R, C-terminal domain protein; PFAM: type I restriction enzyme R protein N terminus (HSDR_N); EcoEI R protein C-terminal; type III restriction enzyme, res subunit YP_003697389.1 KEGG: ACAS2; acetyl-coenzyme a synthetase; SPTR: B8C359 acetyl-coenzyme a synthetase (Fragment) YP_003697390.1 KEGG: ere:EUBREC_3502 hypothetical protein; SPTR: C0FM79 uncharacterized protein YP_003697391.1 InterPro IPR014942; KEGG: ere:EUBREC_3503 hypothetical protein; PFAM: Domain of unknown function DUF1814; SPTR: A8RVS1 uncharacterized protein; PFAM: Domain of unknown function (DUF1814) YP_003697392.1 InterPro IPR013216; KEGG: cdi:DIP0762 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Q6NIK7 uncharacterized protein; PFAM: methyltransferase domain YP_003697393.1 InterPro IPR011051:IPR013096; KEGG: cdi:DIP0761 hypothetical protein; PFAM: cupin; SPTR: Q6NIK8 uncharacterized protein; PFAM: Cupin domain YP_003697394.1 InterPro IPR018532; KEGG: xce:Xcel_3402 hypothetical protein; PFAM: Domain of unknown function DUF1994; SPTR: A7BB87 uncharacterized protein; PFAM: Domain of unknown function (DUF1994) YP_003697395.1 InterPro IPR001869; KEGG: ssb:SSUBM407_0558 suilysin (hemolysin); PFAM: thiol-activated cytolysin; SPTR: O31241 Pyolysin; PFAM: thiol-activated cytolysin YP_003697396.1 COGs: COG0406 fructose-2 6-bisphosphatase; InterPro IPR001345:IPR013078; KEGG: jde:Jden_1640 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SPTR: C2BVI5 Possible phosphoglycerate mutase; PFAM: phosphoglycerate mutase family YP_003697397.1 COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: jde:Jden_1641 iojap-like protein; PFAM: Iojap-related protein; SPTR: C0W2U5 Iojap family protein; TIGRFAM: iojap-like protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-related protein YP_003697398.1 KEGG: hypothetical protein; SPTR: D0WNB1 uncharacterized protein YP_003697399.1 COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; InterPro IPR004821:IPR005248:IPR014729:IPR004820; KEGG: bcv:Bcav_1634 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: D0WNB2 Nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain YP_003697400.1 COGs: COG3118 thioredoxin domain-containing protein; InterProIPR012336:IPR005746:IPR017936:IPR017937:IPR 012335:IPR013766:IPR006662; KEGG: cur:cur_1977 thioredoxin; PFAM: thioredoxin domain; SPTR: B1VIY8 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin; TIGRFAM: thioredoxin YP_003697401.1 InterPro IPR011251; KEGG: bcv:Bcav_1628 hypothetical protein; SPTR: D0WNB4 nitrilotriacetate monooxygenase YP_003697402.1 COGs: COG0536 GTPase; InterProIPR006169:IPR015349:IPR014100:IPR006074:IPR 002917:IPR006073; KEGG: xce:Xcel_2258 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; SPTR: D1BV37 GTP-binding protein Obg/CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; Obg family GTPase CgtA; PFAM: GTPase of unknown function; Domain of unknown function (DUF1967); GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; Obg family GTPase CgtA, C-terminal extension; small GTP-binding protein domain YP_003697403.1 COGs: COG0211 ribosomal protein L27; InterPro IPR001684:IPR018261; KEGG: sma:SAV_5468 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: D0WNB6 ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_003697404.1 COGs: COG0261 ribosomal protein L21; InterPro IPR001787:IPR018258; KEGG: bcv:Bcav_1622 ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: D0WNB7 ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_003697405.1 COGs: COG1530 ribonuclease G and E; InterProIPR016027:IPR004659:IPR003029:IPR012340:IPR 019307; KEGG: bcv:Bcav_1618 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/ribonuclease E/G; RNA binding S1 domain protein; SPTR: D0WNB8 S1 RNA binding domain protein; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family YP_003697406.1 COGs: COG1271 cytochrome bd-type quinol oxidase subunit 1; InterPro IPR002585; KEGG: xce:Xcel_2267 cytochrome bd ubiquinol oxidase subunit I; PFAM: cytochrome bd ubiquinol oxidase subunit I; SPTR: D0WNB9 cytochrome D ubiquinol oxidase subunit I; PFAM: Bacterial cytochrome Ubiquinol Oxidase YP_003697407.1 COGs: COG1294 cytochrome bd-type quinol oxidase subunit 2; InterPro IPR003317; KEGG: bcv:Bcav_1616 cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; SPTR: D0WNC0 cytochrome D ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase subunit II (cydB) YP_003697408.1 COGs: COG4988 ABC-type transporter involved in cytochrome bd biosynthesis ATPase and permease components; InterProIPR011527:IPR014216:IPR003439:IPR017940:IPR 003593:IPR001140; KEGG: jde:Jden_1656 ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane protein; SMART: ATPase AAA; SPTR: D0WNC1 ABC transporter CydDC cysteine exporter family, permease/ATP-binding protein CydD; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane protein; ABC transporter; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD YP_003697409.1 COGs: COG4987 ABC-type transporter involved in cytochrome bd biosynthesis fused ATPase and permease components; InterProIPR011527:IPR014223:IPR003439:IPR017940:IPR 017871:IPR003593; KEGG: bcv:Bcav_1614 ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C0W2T3 ABC superfamily ATP binding cassette transporter ABC protein CydC; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC YP_003697410.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR003018:IPR011712; KEGG: bcv:Bcav_1613 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: GAF domain protein; ATP-binding region ATPase domain protein; SPTR: D0WNC3 two-component sensor; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain YP_003697411.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR011006:IPR000792:IPR001789:IPR011991; KEGG: jde:Jden_1659 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; SPTR: D0WNC4 DNA-binding response regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003697412.1 COGs: COG0266 Formamidopyrimidine-DNA glycosylase; InterProIPR012319:IPR010979:IPR000191:IPR000214:IPR 015886:IPR010663; KEGG: bcv:Bcav_1610 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; zinc finger Fpg domain protein; PRIAM: DNA-formamidopyrimidine glycosylase; SPTR: C5C3G7 DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; Zinc finger found in FPG and IleRS; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg) YP_003697413.1 COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR000999:IPR011907:IPR001159:IPR014720; KEGG: bcv:Bcav_1609 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; PRIAM: ribonuclease III; SMART: ribonuclease III; double-stranded RNA binding domain protein; SPTR: D0WNC5 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial YP_003697414.1 COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: jde:Jden_1668 protein of unknown function DUF177; PFAM: protein of unknown function DUF177; SPTR: D0WNC6 uncharacterized protein; PFAM: Uncharacterized ACR, COG1399 YP_003697415.1 KEGG: bcv:Bcav_1606 hypothetical protein; SPTR: D0WNC7 uncharacterized protein YP_003697416.1 COGs: COG0669 phosphopantetheine adenylyltransferase; InterPro IPR004821:IPR001980:IPR014729:IPR004820; KEGG: bcv:Bcav_1605 pantetheine-phosphate adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: C5C3G2 Pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_003697417.1 COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398:IPR002052:IPR016065; KEGG: kra:Krad_1371 methyltransferase; PFAM: protein of unknown function methylase SPTR: A7BCZ1 uncharacterized protein; TIGRFAM: methyltransferase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family YP_003697418.1 COGs: COG1200 RecG-like helicase; InterProIPR016027:IPR014021:IPR001650:IPR014001:IPR 004365:IPR011545; KEGG: xce:Xcel_2279 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase; nucleic acid binding OB-fold tRNA/helicase-type; helicase; SMART: DEAD-like helicase ; helicase; SPTR: D0WND1 ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; OB-fold nucleic acid binding domain; TIGRFAM: ATP-dependent DNA helicase RecG YP_003697419.1 COGs: COG0227 ribosomal protein L28; InterPro IPR001383; KEGG: jde:Jden_1676 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: C0W2R8 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_003697420.1 COGs: COG4604 ABC-type enterochelin transporter ATPase component; InterPro IPR003439:IPR003593; KEGG: mlu:Mlut_16570 ABC-type enterochelin transporter, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C5CC04 ABC-type enterochelin transport system, ATPase component; PFAM: ABC transporter YP_003697421.1 COGs: COG4605 ABC-type enterochelin transporter permease; InterPro IPR000522; KEGG: mlu:Mlut_16580 ABC-type enterochelin transporter, permease; PFAM: transporter permease; SPTR: C5CC05 ABC-type enterochelin transporter, permease; PFAM: FecCD transport family YP_003697422.1 COGs: COG4606 ABC-type enterochelin transporter permease; InterPro IPR000522; KEGG: bfa:Bfae_30530 ABC-type enterochelin transporter, permease; PFAM: transporter permease; SPTR: C7MAS7 ABC-type enterochelin transporter, permease; PFAM: FecCD transport family YP_003697423.1 COGs: COG4607 ABC-type enterochelin transporter periplasmic component; InterPro IPR002491; KEGG: mlu:Mlut_16600 ABC-type enterochelin transporter, periplasmic component; PFAM: periplasmic binding protein; SPTR: C5CC07 ABC-type enterochelin transporter, periplasmic component; PFAM: Periplasmic binding protein YP_003697424.1 COGs: COG0611 thiamine monophosphate kinase; InterPro IPR016188:IPR010918:IPR006283:IPR000728; KEGG: xce:Xcel_2283 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; PRIAM: thiamine-phosphate kinase; SPTR: D1BV62 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase YP_003697425.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterProIPR016185:IPR005905:IPR011761:IPR017964:IPR 000291:IPR013817:IPR013816:IPR011127:IPR011095; KEGG: xce:Xcel_2285 D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: D0WNE0 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_003697426.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: art:Arth_2516 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: D0WNE3 1-acylglycerol-3-phosphate O-acyltransferase, putayive; PFAM: acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_003697427.1 COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; InterPro IPR013792:IPR005750:IPR001986; KEGG: xce:Xcel_2294 UDP-N-acetylglucosamine1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: D0WNE4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_003697428.1 COGs: COG1414 transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: xce:Xcel_2358 IclR family transcripitonal regulator; PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; SPTR: D1BVQ5 IclR family transcripitonal regulator; manually curated; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator YP_003697429.1 COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: sco:SCO2132 glycosyl transferase; PFAM: glycosyl transferase group 1; SPTR: D0WNF3 glycosyl transferase; PFAM: glycosyl transferases group 1 YP_003697430.1 COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: bcv:Bcav_2254 peptidyl-dipeptidase DCP; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; PRIAM: peptidyl-dipeptidase Dcp; SPTR: C7SZ49 peptidyl-dipeptidase; PFAM: peptidase family M3 YP_003697431.1 KEGG: CaJ7_0142; hypothetical protein; SPTR: C7SZ48 uncharacterized protein YP_003697432.1 InterPro IPR016674; KEGG: hypothetical protein; PRIAM: phospholipase D; SPTR: C7SZ47 phospholipase D YP_003697433.1 COGs: COG0008 glutamyl- and glutaminyl-tRNA synthetase; InterProIPR008925:IPR004527:IPR014729:IPR020061:IPR 020751:IPR020058:IPR020060; KEGG: krh:KRH_10280 glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: C7SZ46 glutamyl tRNA synthase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_003697434.1 COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR011234:IPR002529; KEGG: bcv:Bcav_1564 5-oxopent-3-ene-1,2,5-tricarboxylatedecarboxylas E; PFAM: fumarylacetoacetate (FAA) hydrolase; SPTR: C5C3C1 5-oxopent-3-ene-1,2,5-tricarboxylatedecarboxylas e; PFAM: Domain of unknown function (DUF2437); Fumarylacetoacetate (FAA) hydrolase family YP_003697435.1 KEGG: bcv:Bcav_1559 hypothetical protein; SPTR: C1RFW2 uncharacterized protein YP_003697436.1 COGs: COG0011 conserved hypothetical protein; InterPro IPR016198:IPR002767; KEGG: cms:CMS_2065 hypothetical protein; PFAM: protein of unknown function DUF77; SPTR: A4AK94 uncharacterized protein; PFAM: Domain of unknown function DUF77; TIGRFAM: conserved hypothetical protein TIGR00106 YP_003697437.1 InterPro IPR008970:IPR019931:IPR003368:IPR008454; KEGG: cjk:jk0461 surface-anchored collagen-binding protein; PFAM: Cna B domain protein; polymorphic membrane protein Chlamydia; SPTR: Q4JX39 surface-anchored collagen-binding protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; manually curated; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003697438.1 COGs: COG1225 peroxiredoxin; InterPro IPR012336:IPR017936:IPR012335:IPR000866; KEGG: bcv:Bcav_2672 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: D0WNI0 Bacterioferritin comigratory protein; PFAM: AhpC/TSA family YP_003697439.1 KEGG: sfu:Sfum_2880 spermidine synthase; SPTR: A0LMA5 Spermidine synthase with an N-terminal membrane domain-like YP_003697440.1 KEGG: bcv:Bcav_2729 hypothetical protein; SPTR: D0WNI1 uncharacterized protein YP_003697441.1 COGs: COG0127 Xanthosine triphosphate pyrophosphatase; InterPro IPR002637; KEGG: bcv:Bcav_2733 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1 family protein; SPTR: C5BY78 nucleoside-triphosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_003697442.1 COGs: COG0689 RNase PH; InterProIPR020568:IPR015847:IPR002381:IPR018336:IPR 001247; KEGG: bcv:Bcav_2734 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: C0W2H9 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH YP_003697443.1 COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: cgt:cgR_0191 hypothetical protein; PFAM: filamentation induced by cAMP protein Fic; SPTR: A4QAA7 uncharacterized protein; PFAM: Fic/DOC family YP_003697444.1 COGs: COG1234 metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: bcv:Bcav_2736 beta-lactamase domain protein; SPTR: D0WNI4 metal-dependent hydrolase of the beta-lactamase superfamily III; PFAM: metallo-beta-lactamase superfamily YP_003697445.1 COGs: COG0796 glutamate racemase; InterPro IPR001920:IPR004391:IPR018187:IPR015942; KEGG: jde:Jden_0885 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: glutamate racemase; SPTR: C7R2H6 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_003697446.1 InterPro IPR018561; KEGG: bcv:Bcav_2740 hypothetical protein; PFAM: Domain of unknown function DUF2017; SPTR: D0WNI6 uncharacterized protein; PFAM: Domain of unknown function (DUF2017) YP_003697447.1 COGs: COG2127 conserved hypothetical protein; InterPro IPR014719:IPR003769; KEGG: sco:SCO2916 ATP-dependent Clp protease adaptor protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS; SPTR: C4DNG9 Uncharacterized conserved protein, COG2127; PFAM: ATP-dependent Clp protease adaptor protein ClpS YP_003697448.1 COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR006405:IPR007229:IPR015977; KEGG: bcv:Bcav_2742 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; PRIAM: Nicotinate phosphoribosyltransferase; SPTR: D0WNI9 nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; manually curated; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: nicotinate phosphoribosyltransferase YP_003697449.1 COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014021:IPR014001:IPR006935; KEGG: art:Arth_2588 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase; SPTR: D0WNJ0 DNA or RNA helicase of superfamily II; PFAM: type III restriction enzyme, res subunit YP_003697450.1 KEGG: bcv:Bcav_2744 hypothetical protein; SPTR: D0WNJ1 uncharacterized protein; PFAM: protein of unknown function (DUF3039) YP_003697451.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR010992:IPR000119; KEGG: bcv:Bcav_2752 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: D0WNJ5 DNA-binding protein HU; PFAM: Bacterial DNA-binding protein YP_003697452.1 COGs: COG2985 permease; InterPro IPR016040:IPR006512:IPR006037:IPR017871; KEGG: bfa:Bfae_01390 predicted permease; PFAM: YidE/YbjL duplication domain protein; TrkA-C domain protein; SPTR: D0YRM3 YidE/YbjL duplication; TIGRFAM: YidE/YbjL duplication; PFAM: Predicted Permease membrane Region; TrkA-C domain; TIGRFAM: YidE/YbjL duplication YP_003697453.1 COGs: COG0627 esterase; InterPro IPR000801; KEGG: cgt:cgR_1064 hypothetical protein; PFAM: esterase; SPTR: C2KS46 esterase; PFAM: esterase YP_003697454.1 COGs: COG3412 conserved hypothetical protein; InterProIPR000032:IPR004701:IPR012844:IPR005698:IPR 001020; KEGG: ecm:EcSMS35_4856 phosphoenolpyruvate-protein phosphotransferase PtnE; PFAM: PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; SPTR: D0YPG5 PTS-dependent dihydroxyacetone kinase, DhaM subunit; TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: PTS system fructose IIA component; PTS HPr component phosphorylation site; TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; phosphotransferase System HPr (HPr) Family YP_003697455.1 COGs: COG2376 dihydroxyacetone kinase; InterPro IPR004007:IPR012736:IPR012737:IPR004006; KEGG: msm:MSMEG_2123 dihydroxyacetone kinase subunit K; PFAM: Dak kinase; Dak phosphatase; PRIAM: glycerone kinase; SPTR: A0QU93 dihydroxyacetone kinase subunit K; TIGRFAM: dihydroxyacetone kinase subunit K; dihydroxyacetone kinase subunit L; PFAM: DAK2 domain; Dak1 domain; TIGRFAM: dihydroxyacetone kinase, ATP-dependent; dihydroxyacetone kinase subunit K; dihydroxyacetone kinase, phosphoprotein-dependent, L subunit YP_003697456.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: bcv:Bcav_2286 protein of unknown function UPF0118; PFAM: protein of unknown function UPF0118; SPTR: C5BVF0 uncharacterized protein; PFAM: Domain of unknown function DUF20 YP_003697457.1 COGs: COG0171 NAD synthase; InterPro IPR003694:IPR014729; KEGG: aau:AAur_0519 NAD synthetase; PFAM: NAD synthase; SPTR: A1R265 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; TIGRFAM: NAD+ synthetase YP_003697458.1 InterPro IPR006162; KEGG: cjk:jk1856 surface-anchored protein; SPTR: Q4JT22 surface-anchored protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003697459.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439:IPR017871:IPR003593; KEGG: pct:PC1_1544 ABC transporter; PFAM: ABC transporter; SMART: AAA ATPase; SPTR: C6DDX5 ABC transporter; PFAM: ABC transporter YP_003697460.1 COGs: COG1840 ABC-type Fe3+ transporter periplasmic component; KEGG: cdi:DIP0284 ABC transporter; SPTR: Q6NJV9 ABC-transporter iron-binding secreted protein YP_003697461.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR016196:IPR005829:IPR000849:IPR011701; KEGG: ckp:ckrop_0413 glycerol-3-phosphate transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C4LH87 glycerol-3-phosphate transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: glycerol-3-phosphate transporter; phosphoglycerate transporter family protein YP_003697462.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR000463:IPR001867; KEGG: xce:Xcel_2992 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; SPTR: D0YTJ0 transcriptional regulatory protein ResD; PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal YP_003697463.1 COGs: COG2205 osmosensitive K+ channel histidine kinase; InterProIPR003594:IPR009082:IPR005467:IPR003661:IPR 004358; KEGG: xce:Xcel_2991 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: D1BZA0 histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003697464.1 COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); InterPro IPR001015; KEGG: lla:L0194 ferrochelatase; PFAM: ferrochelatase; PRIAM: Ferrochelatase; SPTR: Q9CFB4 Ferrochelatase; TIGRFAM: ferrochelatase; manually curated; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase YP_003697466.1 COGs: COG1738 conserved hypothetical protein; InterPro IPR003744:IPR010916; KEGG: ach:Achl_0725 hypothetical protein; PFAM: protein of unknown function DUF165; SPTR: B8HC12 uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein YP_003697467.1 COGs: COG0778 nitroreductase; InterPro IPR000415; KEGG: abo:ABO_1697 nitrobenzoate reductase, PFAM: nitroreductase; SPTR: A7BEP3 uncharacterized protein; manually curated; PFAM: nitroreductase family YP_003697468.1 COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: xce:Xcel_3337 peptidase U61 LD-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: D1BRS1 peptidase U61 LD-carboxypeptidase A; PFAM: LD-carboxypeptidase YP_003697469.1 KEGG: cpy:Cphy_0999 hypothetical protein; SPTR: D0WRJ8 uncharacterized protein YP_003697470.1 KEGG: similar to erythrocyte membrane-associated giant protein antigen 332; SPTR: C6RAU9 secreted protein YP_003697471.1 KEGG: bra:BRADO3971 hypothetical protein; SPTR: A4YV00 uncharacterized protein YP_003697472.1 COGs: COG0311 glutamine amidotransferase involved in pyridoxine biosynthesis; InterPro IPR002161; KEGG: dsy:DSY4245 glutamine amidotransferase subunit PdxT; PFAM: SNO glutamine amidotransferase; SPTR: D0WI52 glutamine amidotransferase subunit PdxT; PFAM: SNO glutamine amidotransferase family YP_003697473.1 COGs: COG0214 pyridoxine biosynthesis enzyme; InterPro IPR011060:IPR001852; KEGG: ccu:Ccur_10800 pyridoxal phosphate synthase YaaD subunit; PFAM: Vitamin B6 biosynthesis protein; SPTR: B0G7V9 uncharacterized protein; TIGRFAM: pyridoxine biosynthesis protein; PFAM: SOR/SNZ family; TIGRFAM: pyridoxine biosynthesis protein YP_003697474.1 COGs: COG1418 HD superfamily hydrolase; InterPro IPR003607:IPR006674; KEGG: lsa:LSA1145 metal-dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Q38WI6 metal-dependent phosphohydrolase; PFAM: HD domain YP_003697475.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transporters permeases; InterPro IPR001626; KEGG: rer:RER_59750 manganese ABC transporter permease; PFAM: ABC transporter; SPTR: C0VYA2 Iron ABC superfamily ATP binding cassette transporter membrane protein; PFAM: ABC 3 transport family YP_003697476.1 COGs: COG1121 ABC-type Mn/Zn transporters ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: rop:ROP_70560 manganese ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C0VYA1 ABC superfamily ATP binding cassette transporter ABC protein; PFAM: ABC transporter YP_003697477.1 COGs: COG0803 ABC-type metal ion transporter periplasmic component/surface adhesin; InterPro IPR006127:IPR006129:IPR006128; KEGG: rop:ROP_70570 manganese ABC transporter manganese-binding protein; PFAM: periplasmic solute binding protein; SPTR: C0VYA0 metal cation ABC superfamily ATP binding cassette transporter binding protein; PFAM: Periplasmic solute binding protein family YP_003697478.1 KEGG: apr:Apre_0119 hypothetical protein; SPTR: C7RFB0 membrane protein YP_003697479.1 KEGG: cur:cur_1838 hypothetical protein; SPTR: D0WP75 integral membrane protein YP_003697480.1 KEGG: bfa:Bfae_06470 endonuclease/exonuclease/phosphatase family protein; SPTR: A7B9D7 uncharacterized protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003697481.1 COGs: COG1725 transcriptional regulator; InterPro IPR000524:IPR011991; KEGG: apr:Apre_0169 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C0W8Y6 GntR family transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family YP_003697482.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; InterPro IPR003439:IPR003593; KEGG: smu:SMU.1194 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: AAA ATPase; SPTR: C0W8Y7 ABC superfamily ATP binding cassette transporter ABC protein; PFAM: ABC transporter YP_003697483.1 KEGG: acl:ACL_0342 ABC-type transporter, permease component, SPTR: A7BEJ1 uncharacterized protein YP_003697484.1 COGs: COG1126 ABC-type polar amino acid transporter ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: rmu:RMDY18_18540 ABC-type polar amino acid transporter, ATPase component; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: C6R5X7 glutamine transport ATP-binding protein GlnQ; PFAM: ABC transporter YP_003697485.1 COGs: COG0765 ABC-type amino acid transporter permease; InterPro IPR010065:IPR000515; KEGG: krh:KRH_01090 amino acid ABC transporter permease; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: B2GK57 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: Binding-protein-dependent transporter inner membrane component; TIGRFAM: amine acid ABC transporter permease, 3-TM region, His/Glu/Gln/Arg/opine family YP_003697486.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR018313:IPR001638; KEGG: rmu:RMDY18_18580 ABC-type amino acid transport/signal transduction system, periplasmic component; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C6R5X5 L-cystine-binding protein TcyA; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_003697487.1 InterPro IPR003731; KEGG: nca:Noca_2700 hypothetical protein; SPTR: C2BVE9 uncharacterized protein; PFAM: dinitrogenase iron-molybdenum cofactor YP_003697488.1 COGs: COG1114 Branched-chain amino acid permease; InterPro IPR004685; KEGG: cgb:cg2537 branched-chain amino acid uptake carrier; PFAM: branched-chain amino acid transporter II carrier protein; SPTR: C0W213 LIVCS family branched chain amino acid:cation symporter; TIGRFAM: branched-chain amino acid transporter II carrier protein; PFAM: Branched-chain amino acid transporter; TIGRFAM: branched-chain amino acid uptake carrier YP_003697489.1 COGs: COG1114 Branched-chain amino acid permease; InterPro IPR004685; KEGG: car:cauri_1823 branched-chain amino acid uptake carrier; PFAM: branched-chain amino acid transporter II carrier protein; SPTR: C0W213 LIVCS family branched chain amino acid:cation symporter; TIGRFAM: branched-chain amino acid transporter II carrier protein; PFAM: Branched-chain amino acid transporter; TIGRFAM: branched-chain amino acid uptake carrier YP_003697490.1 COGs: COG1114 Branched-chain amino acid permease; InterPro IPR004685; KEGG: cdi:DIP1737 branched-chain amino acid ABC transporter membrane protein; PFAM: branched-chain amino acid transporter II carrier protein; SPTR: C0W213 LIVCS family branched chain amino acid:cation symporter; TIGRFAM: branched-chain amino acid transporter II carrier protein; PFAM: Branched-chain amino acid transporter; TIGRFAM: branched-chain amino acid uptake carrier YP_003697491.1 COGs: COG2818 3-methyladenine DNA glycosylase; InterPro IPR011257:IPR005019; KEGG: blj:BLD_0730 3-methyladenine DNA glycosylase; PFAM: methyladenine glycosylase; PRIAM: DNA-3-methyladenine glycosylase I; SPTR: B3DSQ7 3-methyladenine DNA glycosylase; PFAM: methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I YP_003697492.1 COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: bcv:Bcav_0823 MgtC/SapB transporter; PFAM: MgtC/SapB transporter; SPTR: D0WQ67 MgtC/SapB transporter; PFAM: MgtC family YP_003697493.1 KEGG: fra:Francci3_0231 oxidoreductase FAD/NAD(P)-binding; SPTR: Q2JGH2 oxidoreductase FAD/NAD(P)-binding YP_003697494.1 InterPro IPR007329; KEGG: fra:Francci3_0232 FMN-binding; PFAM: FMN-binding domain protein; SPTR: C5NUC0 FMN-binding; PFAM: FMN-binding domain YP_003697495.1 COGs: COG1477 membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: saq:Sare_1128 hypothetical protein; PFAM: ApbE family lipoprotein; SPTR: A8M5G2 uncharacterized protein; PFAM: ApbE family YP_003697496.1 COGs: COG0153 Galactokinase; InterProIPR020568:IPR000705:IPR019741:IPR006203:IPR 014721:IPR019539:IPR006204:IPR013750:IPR006206; KEGG: nca:Noca_2607 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase domain protein; SPTR: A1SJX6 Galactokinase; TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase YP_003697497.1 KEGG: rca:Rcas_0569 winged helix family two component response transcriptional regulator; SPTR: A7NGV1 two component transcriptional regulator, winged helix family YP_003697498.1 KEGG: kra:Krad_3287 beta-lactamase; SPTR: Q4S4L8 chromosome 2 SCAF14738, whole genome shotgun sequence. (Fragment) YP_003697499.1 COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR016040:IPR005886:IPR001509:IPR008089; KEGG: blj:BLD_1768 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B9TTH2 GalE1; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase YP_003697500.1 COGs: COG4468 Galactose-1-phosphate uridyltransferase; InterPro IPR005849:IPR005850; KEGG: blo:BL1643 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase; SPTR: Q8G3W0 Galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, C-terminal domain; Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 2 YP_003697502.1 COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: fal:FRAAL1622 NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C0W1D4 NADH dehydrogenase (NDH); PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_003697503.1 InterPro IPR009057:IPR001647:IPR012287; KEGG: blj:BLD_1290 AcrR-type transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q8G6X9 Possible TetR-type transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_003697504.1 KEGG: ele:Elen_1391 membrane protein; SPTR: C0BR54 uncharacterized protein YP_003697505.1 COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518:IPR018223:IPR014729; KEGG: cth:Cthe_0179 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: C7HG88 Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase YP_003697506.1 COGs: COG0165 Argininosuccinate lyase; InterProIPR008948:IPR009049:IPR020557:IPR000362:IPR 003031; KEGG: drm:Dred_0278 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: B0MQ53 uncharacterized protein; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase YP_003697507.1 InterPro IPR016181:IPR000182; KEGG: car:cauri_0014 N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C2CSR1 acetyltransferase; PFAM: acetyltransferase (GNAT) family YP_003697508.1 COGs: COG0015 adenylosuccinate lyase; InterProIPR008948:IPR004769:IPR020557:IPR000362:IPR 003031; KEGG: cth:Cthe_0741 adenylosuccinate lyase; PFAM: fumarate lyase; SPTR: C0ECV4 uncharacterized protein; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase YP_003697509.1 COGs: COG0104 adenylosuccinate synthase; InterPro IPR001114; KEGG: pjd:Pjdr2_0612 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: B6FK20 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase YP_003697510.1 COGs: COG0516 IMP dehydrogenase/GMP reductase; InterProIPR005991:IPR018529:IPR000644:IPR013785:IPR 001093; KEGG: sco:SCO1461 inosine 5-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; hypothetical protein; PRIAM: IMP dehydrogenase; SMART: hypothetical protein; SPTR: C0W4C2 Possible IMP dehydrogenase; TIGRFAM: IMP dehydrogenase family protein; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase; IMP dehydrogenase family protein YP_003697511.1 InterPro IPR009057:IPR001647:IPR012287; KEGG: cjk:jk0810 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C5VD50 transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_003697512.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterProIPR011527:IPR003439:IPR017940:IPR017871:IPR 002345:IPR003593; KEGG: ckp:ckrop_1536 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A7BC13 uncharacterized protein; PFAM: ABC transporter transmembrane protein; ABC transporter YP_003697513.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterProIPR011527:IPR003439:IPR017940:IPR017871:IPR 003593:IPR001140; KEGG: ele:Elen_1490 ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane protein; SMART: AAA ATPase; SPTR: C0E4Q8 uncharacterized protein; PFAM: ABC transporter transmembrane protein; ABC transporter YP_003697514.1 COGs: COG1123 ATPase components of various ABC-type transporters contain duplicated ATPase; InterPro IPR003439:IPR017871:IPR003593; KEGG: ckp:ckrop_1533 ABC transporter, ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: C4LKA7 ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_003697515.1 InterPro IPR003339; KEGG: car:cauri_0787 ABC transporter, permease; PFAM: cobalt transporter; SPTR: D0YS34 ABC transporter associated permease; PFAM: Cobalt transport protein YP_003697516.1 InterPro IPR011733; KEGG: mpa:MAP3733c hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; SPTR: A7BC09 uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185 YP_003697517.1 KEGG: hypothetical protein; SPTR: B7GA82 Predicted protein YP_003697518.1 COGs: COG0789 transcriptional regulator; InterPro IPR009061:IPR000551:IPR015358:IPR012925; KEGG: cur:cur_0383 MerR family transcriptional regulator; PFAM: TipAS antibiotic-recognition domain protein; regulatory protein MerR; transcription regulator MerR DNA binding; SMART: regulatory protein MerR; SPTR: B1VF04 transcriptional regulator (MerR family); PFAM: MerR family regulatory protein; MerR, DNA binding; TipAS antibiotic-recognition domain YP_003697519.1 KEGG: mlu:Mlut_02560 hypothetical protein; SPTR: C2BN36 uncharacterized protein YP_003697520.1 COGs: COG1476 transcriptional regulator; InterPro IPR010982:IPR001387; KEGG: mlu:Mlut_02550 predicted transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: D0YR80 transcriptional regulator; PFAM: Helix-turn-helix YP_003697522.1 KEGG: lca:LSEI_1243 XRE family transcriptional regulator; SPTR: C0CY08 uncharacterized protein YP_003697523.1 COGs: COG4690 Dipeptidase; InterPro IPR005322; KEGG: blt:Balat_0226 dipeptidase; PFAM: peptidase U34 dipeptidase; SPTR: C2BRD5 Dipeptidase; PFAM: peptidase family C69 YP_003697524.1 KEGG: blt:Balat_0042 hypothetical protein; SPTR: D0WJK4 Toxin-antitoxin system, toxin component, RelE family YP_003697525.1 InterPro IPR002514; KEGG: kse:Ksed_22010 transposase; PFAM: transposase IS3/IS911 family protein; SPTR: C2BM30 ISMyma01 transposase; PFAM: transposase YP_003697526.1 COGs: COG2801 transposase and inactivated derivatives; InterPro IPR012337:IPR001584; KEGG: kse:Ksed_22000 transposase; PFAM: Integrase catalytic region; SPTR: A7B9Y7 uncharacterized protein; PFAM: Integrase core domain YP_003697527.1 InterPro IPR007337; KEGG: blt:Balat_1584 hypothetical protein; PFAM: RelB antitoxin; SPTR: C6AG15 uncharacterized protein; TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family YP_003697528.1 KEGG: hypothetical protein; SPTR: C2M2A7 uncharacterized protein YP_003697529.1 KEGG: etr:ETAE_1601 hypothetical protein; SPTR: D0Z7M3 uncharacterized protein YP_003697530.1 KEGG: cpf:CPF_1918 M50 family peptidase; SPTR: Q8XJT9 uncharacterized protein CPE1664; manually curated YP_003697531.1 KEGG: bfs:BF1081 hypothetical protein; SPTR: Q5LGC7 uncharacterized protein YP_003697533.1 COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: tte:TTE2358 Fe-S oxidoreductase; PFAM: radical SAM protein; SPTR: C2GIA8 radical SAM domain protein; PFAM: radical SAM superfamily YP_003697534.1 InterPro IPR016196:IPR011701; KEGG: bln:Blon_2418 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: B7GP77 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_003697535.1 COGs: COG2801 transposase and inactivated derivatives; InterPro IPR012337:IPR001584; KEGG: cur:cur_1459 transposase for insertion sequence; PFAM: Integrase catalytic region; SPTR: B1VGV7 transposase for insertion sequence; PFAM: Integrase core domain YP_003697536.1 InterPro IPR019270; KEGG: cmi:CMM_0214 hypothetical protein; PFAM: protein of unknown function DUF2283; SPTR: A5CMF0 uncharacterized protein; PFAM: protein of unknown function (DUF2283) YP_003697537.1 SPTR: C2BV36 uncharacterized protein YP_003697538.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: spa:M6_Spy1124 site-specific recombinase; PFAM: Resolvase domain; Recombinase; SPTR: C2BV34 Site-specific recombinase; PFAM: Recombinase; Resolvase, N terminal domain YP_003697539.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: bfa:Bfae_25310 ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A7BBF3 uncharacterized protein; manually curated; tmRNA as predicted by Rfam (RF00023), score 152.86; PFAM: ABC transporter YP_003697540.1 COGs: COG0647 sugar phosphatase of the HAD superfamily; InterPro IPR006357:IPR005834; KEGG: jde:Jden_2424 HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: D0WLK8 Sugar phosphatase/hydrolase of the HAD family protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; TIGRFAM: HAD-superfamily subfamily IIA hydrolase, TIGR01457; Haloacid Dehalogenase Superfamily class (subfamily) IIA YP_003697541.1 COGs: COG0691 tmRNA-binding protein; InterPro IPR000037:IPR020081; KEGG: bcv:Bcav_2766 SsrA-binding protein; PFAM: SmpB protein; SPTR: D0WNL4 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_003697542.1 COGs: COG0739 membrane protein related to metalloendopeptidase; InterPro IPR011055:IPR016047; KEGG: bcv:Bcav_2767 peptidase M23; PFAM: peptidase M23; SPTR: D0WNL6 M23 peptidase domain protein; PFAM: peptidase family M23 YP_003697543.1 COGs: COG2177 cell division protein; InterPro IPR003838; KEGG: jde:Jden_0865 cell division protein FtsX; PFAM: protein of unknown function DUF214; SPTR: D0WNL7 cell division protein; PFAM: Predicted permease YP_003697544.1 COGs: COG2884 ATPase involved in cell division; InterPro IPR005286:IPR003439:IPR017871:IPR003593; KEGG: bcv:Bcav_2769 cell division ATP-binding protein FtsE; PFAM: ABC transporter; SMART: AAA ATPase; SPTR: D0WNL8 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE YP_003697545.1 COGs: COG1186 protein chain release factor B; InterPro IPR004374:IPR000352:IPR005139; KEGG: bcv:Bcav_2771 peptide chain release factor 2; PFAM: class I peptide chain release factor; PCRF domain protein; SPTR: D0WNM0 peptide chain release factor 2; TIGRFAM: peptide chain release factor 2; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2 YP_003697546.1 KEGG: kra:Krad_3784 hypothetical protein; SPTR: A6WEK8 uncharacterized protein YP_003697547.1 KEGG: xce:Xcel_1028 TadE family protein; SPTR: D1BYY4 TadE family protein YP_003697548.1 KEGG: xce:Xcel_1029 TadE family protein; SPTR: A1R814 TadE-like family protein YP_003697549.1 KEGG: kse:Ksed_10350 hypothetical protein; SPTR: A4AK55 uncharacterized protein YP_003697550.1 InterPro IPR018076; KEGG: bcv:Bcav_2789 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: C5BYD4 type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain YP_003697551.1 COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR018076; KEGG: xce:Xcel_1032 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: D1BYY8 type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain YP_003697552.1 COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482; KEGG: fra:Francci3_0779 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: A3TG68 type II/type IV pathway secretion protein; PFAM: type II/IV secretion system protein YP_003697553.1 COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR011009:IPR002575; KEGG: bcv:Bcav_2900 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: D0WNM2 phosphotransferase; PFAM: phosphotransferase enzyme family YP_003697554.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016:IPR014017:IPR000212; KEGG: jde:Jden_0712 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: D0WNM3 ATP-dependent DNA helicase; PFAM: UvrD/REP helicase YP_003697555.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016:IPR014017:IPR000212; KEGG: jde:Jden_0711 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: D0WNM4 Helicase, UvrD/Rep family; PFAM: Domain of unknown function DUF83; UvrD/REP helicase YP_003697556.1 COGs: COG2354 conserved hypothetical protein; InterPro IPR008526; KEGG: mlu:Mlut_15650 hypothetical protein; PFAM: protein of unknown function DUF808; SPTR: C5CBD4 Uncharacterized conserved protein; PFAM: protein of unknown function (DUF808) YP_003697557.1 KEGG: blt:Balat_1259 hypothetical protein; SPTR: D0WNM5 ATP-binding protein; PFAM: protein of unknown function (DUF3107) YP_003697558.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021:IPR001650:IPR014014:IPR000629:IPR 014001:IPR011545; KEGG: bcv:Bcav_2906 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase; SPTR: D0WNN3 ATP-dependent RNA helicase DeaD; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_003697559.1 COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: cai:Caci_8100 multiple antibiotic resistance (MarC)-related protein; PFAM: multiple antibiotic resistance (MarC)-related protein; SPTR: D0YNY9 membrane protein; PFAM: MarC family integral membrane protein; TIGRFAM: conserved hypothetical protein TIGR00427 YP_003697560.1 COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR016195:IPR003141:IPR004013; KEGG: jde:Jden_0704 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: D0WNN5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: PHP domain YP_003697561.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994:IPR001131:IPR007865; KEGG: bcv:Bcav_2910 peptidase M24; PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; SPTR: D0WNN6 Xaa-Pro aminopeptidase I; PFAM: Aminopeptidase P, N-terminal domain; metallopeptidase family M24 YP_003697562.1 COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR011002:IPR000644:IPR006668; KEGG: bcv:Bcav_2913 MgtE intracellular region; PFAM: MgtE intracellular region; hypothetical protein; SPTR: D0WNN7 magnesium transporter MgtE; PFAM: MgtE intracellular N domain; CBS domain YP_003697563.1 COGs: COG4420 membrane protein; InterPro IPR010406; KEGG: xce:Xcel_0765 protein of unknown function DUF1003; PFAM: protein of unknown function DUF1003; SPTR: C0W117 integral membrane protein; PFAM: protein of unknown function (DUF1003) YP_003697564.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR000808:IPR002744:IPR019591; KEGG: kse:Ksed_19390 ATPase involved in chromosome partitioning; PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; SPTR: D0WNN9 Mrp protein; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; ATPase MipZ YP_003697565.1 COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: bcv:Bcav_2922 O-methyltransferase family 3; PFAM: O-methyltransferase family 3; SPTR: D0WNP0 O-methyltransferase; PFAM: O-methyltransferase YP_003697566.1 COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033; KEGG: jde:Jden_1291 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: D0WLB2 Sec-independent protein translocase TatC; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC YP_003697567.1 InterPro IPR003369; KEGG: jde:Jden_1290 twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: D0WLB1 Sec-independent twin-arginine translocase system protein; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_003697568.1 COGs: COG0725 ABC-type molybdate transporter periplasmic component; InterPro IPR005950:IPR006059; KEGG: pac:PPA0504 molybdate-binding protein precursor; PFAM: extracellular solute-binding protein family 1; SPTR: Q6AAF9 molybdate-binding protein; TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: substrate binding domain of ABC-type glycine betaine transport system; TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein YP_003697569.1 COGs: COG4149 ABC-type molybdate transporter permease; InterProIPR006469:IPR011867:IPR003439:IPR000515:IPR 003593; KEGG: sgr:SGR_3501 ABC transporter ATPase and permease component; PFAM: ABC transporter; binding-protein-dependent transport systems inner membrane component; SMART: ATPase AAA; SPTR: A7BBD7 uncharacterized protein; TIGRFAM: NifC-like ABC-type porter; molybdate ABC transporter inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter; TIGRFAM: molybdate ABC transporter permease; NifC-like ABC-type porter YP_003697570.1 COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: car:cauri_1058 molybdenum cofactor biosynthesis protein; PFAM: molybdopterin cofactor biosynthesis MoaC region; SPTR: A7BBB8 uncharacterized protein; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC YP_003697571.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR005110:IPR001453:IPR005111:IPR020817; KEGG: bcv:Bcav_1229 molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV; SPTR: C5C1M1 Molybdenum cofactor synthesis domain protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_003697572.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR009036:IPR016040:IPR000594:IPR007901; KEGG: ach:Achl_2496 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; SPTR: B8HBS3 UBA/THIF-type NAD/FAD binding protein; PFAM: MoeZ/MoeB domain; ThiF family YP_003697573.1 COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR003448:IPR001453; KEGG: xce:Xcel_1817 molybdenum cofactor synthesis domain protein; PFAM: molybdopterin biosynthesis MoaE protein; molybdopterin binding domain; SPTR: D0WL91 Molybdopterin converting factor, subunit 2; PFAM: Probable molybdopterin binding domain; MoaE protein; TIGRFAM: molybdenum cofactor synthesis domain YP_003697574.1 InterPro IPR016155:IPR012675:IPR003749; KEGG: fre:Franean1_6174 thiamineS protein; PFAM: thiamineS protein; SPTR: D0WL89 Molybdopterin converting factor, subunit 1; PFAM: ThiS family YP_003697575.1 COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterProIPR013483:IPR000385:IPR013785:IPR006638:IPR 007197:IPR010505; KEGG: kra:Krad_3625 molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: D0WL88 Molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum Cofactor Synthesis C; radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial YP_003697576.1 InterPro IPR017896:IPR017900:IPR001450; KEGG: cur:cur_0829 hypothetical protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C2BU46 uncharacterized protein YP_003697577.1 COGs: COG3381 Uncharacterized component of anaerobic dehydrogenase; InterPro IPR010395; KEGG: pac:PPA0497 component of anaerobic dehydrogenase; PFAM: cytoplasmic chaperone TorD family protein; SPTR: Q6AAG6 component of anaerobic dehydrogenase; PFAM: nitrate reductase subunit delta YP_003697578.1 COGs: COG3302 DMSO reductase anchor subunit; InterPro IPR007059; KEGG: pac:PPA0515 anaerobic dimethyl sulfoxide reductase chain C; PFAM: DMSO reductase anchor subunit (DmsC); SPTR: C2BU48 Anaerobic dimethyl sulfoxide reductase chain C; PFAM: DMSO reductase anchor subunit (DmsC) YP_003697579.1 COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR014297:IPR017896:IPR017900:IPR001450; KEGG: pac:PPA0516 anaerobic dimethyl sulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C2BU49 Anaerobic dimethyl sulfoxide reductase, chain B; TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S binding domain; TIGRFAM: DMSO reductase, iron-sulfur subunit YP_003697580.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterProIPR009010:IPR006311:IPR011888:IPR017909:IPR 006655:IPR019546:IPR006963:IPR006656:IPR006657; KEGG: pac:PPA0517 anaerobic dimethyl sulfoxide reductase chain A; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; molydopterin dinucleotide-binding region; SPTR: C2BU50 Possible trimethylamine-N-oxide reductase (cytochrome c); TIGRFAM: anaerobic dimethyl sulfoxide reductase, subunit alpha, DmsA/YnfE family; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: anaerobic dimethyl sulfoxide reductase, subunit alpha, DmsA/YnfE family; molybdopterin guanine dinucleotide-containing S/N-oxide reductases YP_003697581.1 InterPro IPR009057:IPR001647; KEGG: oih:OB3184 transcriptional regulator; SPTR: C2BU51 uncharacterized protein YP_003697582.1 InterPro IPR003998; KEGG: art:Arth_2793 hypothetical protein; SPTR: D0YUR5 uncharacterized protein YP_003697583.1 KEGG: pac:PPA0514 molybdopterin-guanine dinucleotide biosynthesis protein; SPTR: C0W5Q3 uncharacterized protein YP_003697584.1 KEGG: xce:Xcel_0979 hypothetical protein; SPTR: C1RFG8 uncharacterized protein; PFAM: protein of unknown function (DUF3117) YP_003697585.1 COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: jde:Jden_0806 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: D0WNP2 Methionyl-tRNA formyltransferase; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2 YP_003697586.1 COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR011268:IPR011269:IPR000845; KEGG: krh:KRH_17010 purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: D0WNP4 Purine nucleotide phosphorylase; TIGRFAM: purine nucleotide phosphorylase; inosine guanosine and xanthosine phosphorylase family; PFAM: phosphorylase superfamily; TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleotide phosphorylase YP_003697587.1 COGs: COG1109 phosphomannomutase; InterProIPR016055:IPR016066:IPR005844:IPR005845:IPR 005846:IPR005841; KEGG: krh:KRH_18890 phosphoglucomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; SPTR: D0WNP5 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_003697588.1 COGs: COG0274 deoxyribose-phosphate aldolase; InterPro IPR011343:IPR002915:IPR013785; KEGG: cdi:DIP0273 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: deoxyribose-phosphate aldolase; SPTR: D0WNP6 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase YP_003697589.1 KEGG: bcv:Bcav_2937 hypothetical protein; SPTR: C5BZ67 uncharacterized protein YP_003697590.1 COGs: COG0213 thymidine phosphorylase; InterProIPR000053:IPR017459:IPR000312:IPR013102:IPR 020072:IPR018090:IPR017872; KEGG: car:cauri_1882 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; glycosyl transferase, family 3-like; PRIAM: thymidine phosphorylase; SPTR: C3PI21 thymidine phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family, a/b domain; Pyrimidine nucleoside phosphorylase C-terminal domain; glycosyl transferase family, helical bundle domain; TIGRFAM: pyrimidine-nucleoside phosphorylase YP_003697591.1 COGs: COG0295 Cytidine deaminase; InterPro IPR002125:IPR016193:IPR016192; KEGG: sma:SAV_3366 cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: C1YSR4 Cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric YP_003697592.1 COGs: COG1079 ABC-type transporter permease component; InterPro IPR001851; KEGG: bcv:Bcav_2944 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A7B9G8 uncharacterized protein; PFAM: Branched-chain amino acid transporter / permease YP_003697593.1 COGs: COG4603 ABC-type uncharacterized transporter permease; InterPro IPR001851; KEGG: xce:Xcel_0996 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A7B9G9 uncharacterized protein; PFAM: Branched-chain amino acid transporter / permease YP_003697594.1 COGs: COG3845 ABC-type uncharacterized transporters ATPase components; InterPro IPR003439:IPR003593:IPR017871; KEGG: kse:Ksed_07930 nucleoside ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A7B9H0 uncharacterized protein; PFAM: ABC transporter YP_003697595.1 COGs: COG1744 Uncharacterized ABC-type transporter periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: xce:Xcel_0994 basic membrane lipoprotein; PFAM: basic membrane lipoprotein; SPTR: A7B9H1 uncharacterized protein; PFAM: Basic membrane protein YP_003697596.1 COGs: COG0836 mannose-1-phosphate guanylyltransferase; InterPro IPR005835:IPR001538:IPR011051; KEGG: xce:Xcel_0992 mannose-1-phosphate guanylyltransferase (GDP); PFAM: nucleotidyl transferase; mannose-6-phosphate isomerase type II; PRIAM: mannose-1-phosphate guanylyltransferase; SPTR: D1BYU8 mannose-1-phosphate guanylyltransferase (GDP); PFAM: nucleotidyl transferase; mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_003697597.1 COGs: COG1295 membrane protein; InterPro IPR004664:IPR018247; KEGG: bcv:Bcav_2955 ribonuclease BN; PFAM: ribonuclease BN; SPTR: C5BZ85 ribonuclease BN; PFAM: ribonuclease BN-like family; TIGRFAM: ribonuclease YP_003697598.1 COGs: COG0708 exonuclease III; InterPro IPR004808:IPR005135; KEGG: jde:Jden_0698 exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; SPTR: D0WNQ6 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth) YP_003697599.1 COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR020630:IPR020631:IPR016040:IPR000672; KEGG: krh:KRH_17990 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: C2KRA9 Methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_003697600.1 COGs: COG0112 glycine/serine hydroxymethyltransferase; InterPro IPR001085:IPR015421:IPR015424; KEGG: xce:Xcel_0754 glycine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; PRIAM: glycine hydroxymethyltransferase; SPTR: D1BXI3 glycine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase YP_003697601.1 COGs: COG0788 Formyltetrahydrofolate hydrolase; InterPro IPR004810:IPR002912:IPR002376; KEGG: aau:AAur_1226 formyltetrahydrofolate deformylase; PFAM: formyl transferase; amino acid-binding ACT domain protein; SPTR: C2KP22 Formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: ACT domain; Formyl transferase; TIGRFAM: formyltetrahydrofolate deformylase YP_003697602.1 COGs: COG0351 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR013749:IPR004305:IPR016084:IPR004399; KEGG: pac:PPA0110 thiamine-phosphate pyrophosphorylase; PFAM: phosphomethylpyrimidine kinase type-1; TENA/THI-4 domain protein; SPTR: Q6ABQ9 thiamine biosynthesis protein; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase; TENA/THI-4/PQQC family; TIGRFAM: phosphomethylpyrimidine kinase YP_003697603.1 COGs: COG0352 thiamine monophosphate synthase; InterPro IPR003733:IPR013785; KEGG: vha:VIBHAR_06844 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; PRIAM: thiamine-phosphate diphosphorylase; SPTR: D0WTK8 thiamine-phosphate diphosphorylase; PFAM: thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase YP_003697604.1 COGs: COG2145 hydroxyethylthiazole kinase sugar kinase family; InterPro IPR011144:IPR000417; KEGG: cgt:cgR_1525 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase; PRIAM: hydroxyethylthiazole kinase; SPTR: C5VF20 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase family; TIGRFAM: hydroxyethylthiazole kinase YP_003697605.1 COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR001451:IPR011004:IPR018357; KEGG: tfu:Tfu_1260 maltose O-acetyltransferase; SPTR: D0YUJ3 maltose O-acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats) YP_003697606.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR000792:IPR001789:IPR011991:IPR011006:IPR 016032; KEGG: jde:Jden_0656 LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; SPTR: C7R1A5 Two component LuxR family transcriptional regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003697607.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: bcv:Bcav_3034 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: C0W6Q0 Signal transduction histidine kinase; PFAM: PspC domain YP_003697608.1 InterPro IPR007168; KEGG: rsa:RSal33209_0977 stress-responsive transcriptional regulator; PFAM: PspC domain protein; SPTR: C0W6P9 Possible phage shock protein C; PFAM: PspC domain; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003697609.1 KEGG: chl:Chy400_1644 polysaccharide biosynthesis protein; SPTR: C0W6P8 uncharacterized protein YP_003697610.1 COGs: COG3012 conserved hypothetical protein; KEGG: nca:Noca_0950 SecC motif-containing protein; SPTR: A1SF88 Sec-C motif containing protein YP_003697611.1 COGs: COG0039 malate/lactate dehydrogenase; InterProIPR001557:IPR001236:IPR016040:IPR015955:IPR 010945; KEGG: sgr:SGR_2711 malate dehydrogenase; PFAM: lactate/malate dehydrogenase; SPTR: D0WNS0 malate dehydrogenase; TIGRFAM: malate dehydrogenase; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase YP_003697613.1 COGs: COG0166 glucose-6-phosphate isomerase; InterPro IPR001672:IPR018189; KEGG: pac:PPA2131 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); PRIAM: glucose-6-phosphate isomerase; SPTR: D0WNS5 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase YP_003697614.1 COGs: COG0366 glycosidase; InterPro IPR006047:IPR013781:IPR006589:IPR017853; KEGG: xce:Xcel_0747 alpha-1,6-glucosidase, pullulanase-type; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C1RNE2 alpha-1,6-glucosidase, pullulanase-type; PFAM: alpha amylase, catalytic domain YP_003697615.1 COGs: COG0205 6-phosphofructokinase; InterPro IPR000023:IPR009161:IPR015912; KEGG: app:CAP2UW1_0237 6-phosphofructokinase; PFAM: phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: D0WNT4 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase; TIGRFAM: 6-phosphofructokinase, eukaryotic type YP_003697616.1 COGs: COG3250 beta-galactosidase/beta-glucuronidase; InterProIPR000421:IPR006104:IPR006102:IPR006103:IPR 011081:IPR011080:IPR013781:IPR019931:IPR017853:IPR008979:I PR006101; KEGG: apv:Apar_0102 glycoside hydrolase family 2 sugar binding; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; Ig domain protein; coagulation factor 5/8 type domain protein; SPTR: A4K5H9 beta-galactosidase BbgIII; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: F5/8 type C domain; domain; glycosyl hydrolases family 2, TIM barrel domain; Bacterial Ig-like domain (group 4); glycosyl hydrolases family 2, sugar binding domain; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003697617.1 KEGG: bfa:Bfae_24070 hypothetical protein; SPTR: D0WNU3 membrane protein; PFAM: protein of unknown function (DUF3017) YP_003697618.1 KEGG: xce:Xcel_0736 PE-PGRS family protein; SPTR: D0WNV5 uncharacterized protein YP_003697619.1 COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterProIPR005810:IPR003781:IPR005811:IPR016040:IPR 016102:IPR017440; KEGG: jde:Jden_0672 succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding protein; ATP-citrate lyase/succinyl-CoA ligase; SPTR: D0WNW3 Succinyl-CoA synthetase subunit alpha; TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, subunit alpha YP_003697620.1 COGs: COG0045 Succinyl-CoA synthetase beta subunit; InterProIPR011761:IPR013650:IPR005811:IPR013816:IPR 016102:IPR005809:IPR017866; KEGG: kra:Krad_3999 succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: succinate--CoA ligase (ADP-forming); SPTR: D0WNW4 Succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, subunit beta YP_003697621.1 COGs: COG1835 acyltransferase; InterPro IPR002656:IPR013830; KEGG: kse:Ksed_15740 predicted acyltransferase; PFAM: acyltransferase 3; SPTR: C7NI82 Predicted acyltransferase; PFAM: acyltransferase family YP_003697622.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016:IPR014017:IPR000212; KEGG: bcv:Bcav_3026 ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; SPTR: Q1M2Q1 Helicase; PFAM: UvrD/REP helicase; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; ATP-dependent DNA helicase PcrA YP_003697623.1 COGs: COG4409 Neuraminidase (sialidase); InterPro IPR002860:IPR019931:IPR011040; KEGG: bln:Blon_2348 exo-alpha-sialidase; PFAM: glycosyl hydrolase; SPTR: B7GNQ0 Exo-alpha-sialidase; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: BNR/Asp-box repeat YP_003697624.1 COGs: COG1296 branched-chain amino acid permease (azaleucine resistance); InterPro IPR011606; KEGG: bsu:BSU26710 branched-chain amino acid transporter; PFAM: AzlC family protein; SPTR: C6LJP4 Azaleucine resistance protein AzlC; PFAM: AzlC protein YP_003697625.1 InterPro IPR002514; KEGG: kse:Ksed_22010 transposase; PFAM: transposase IS3/IS911 family protein; SPTR: A7B9Y6 uncharacterized protein; PFAM: transposase YP_003697626.1 KEGG: cli:Clim_1762 hypothetical protein; SPTR: B3EEJ1 uncharacterized protein YP_003697627.1 InterPro IPR002514; KEGG: kse:Ksed_22010 transposase; PFAM: transposase IS3/IS911 family protein; SPTR: A7B9Y6 uncharacterized protein; PFAM: transposase YP_003697628.1 KEGG: cpf:CPF_0994 hypothetical protein; SPTR: B1RAN5 membrane protein YP_003697629.1 COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterProIPR017926:IPR000991:IPR018318:IPR001674:IPR 014729:IPR004739:IPR011702:IPR006220:IPR001317; KEGG: rmu:RMDY18_05420 GMP synthase; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; tRNA methyl transferase-like; SPTR: Q1M2R0 GMP synthase/glutamine amidotransferase; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase C terminal domain; Asparagine synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or subunit beta; GMP synthase (glutamine-hydrolyzing), N-terminal domain or subunit alpha YP_003697630.1 SPTR: B4B116 Lipoprotein signal peptidase YP_003697632.1 KEGG: sun:SUN_2192 phospho-N-acetylmuramoyl-pentapeptide-transferase; SPTR: A6QCC3 phospho-N-acetylmuramoyl-pentapeptide-transferase YP_003697633.1 KEGG: cjk:jk0698 hypothetical protein; SPTR: Q4JWE7 uncharacterized protein; manually curated YP_003697634.1 KEGG: cjk:jk0699 hypothetical protein; SPTR: Q4JWE6 uncharacterized protein; PFAM: Domain of unknown function (DUF955) YP_003697635.1 InterPro IPR001387:IPR010982; KEGG: cjk:jk0700 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Q4JWE5 uncharacterized protein; PFAM: Helix-turn-helix YP_003697636.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145:IPR020103:IPR006224; KEGG: sma:SAV_6707 ribosomal pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: D0WNY8 RNA pseudouridylate synthase family protein; PFAM: RNA pseudouridylate synthase YP_003697637.1 COGs: COG0280 phosphotransacetylase; InterPro IPR002505:IPR004614; KEGG: bfa:Bfae_08770 phosphotransacetylase; PFAM: phosphate acetyl/butaryl transferase; SPTR: D0WNY9 phosphate acetyltransferase pta; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase YP_003697638.1 COGs: COG0282 acetate kinase; InterPro IPR004372:IPR000890; KEGG: xce:Xcel_0692 acetate kinase; PFAM: acetate and butyrate kinase; SPTR: D0WNZ0 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetokinase family; TIGRFAM: acetate kinase YP_003697639.1 InterPro IPR000182:IPR016181; KEGG: sgr:SGR_127 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: A7B9Y5 uncharacterized protein; PFAM: acetyltransferase (GNAT) family YP_003697640.1 COGs: COG1196 chromosome segregation ATPase; InterPro IPR019931; KEGG: hypothetical protein; SPTR: Q4Q3D8 uncharacterized protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein YP_003697641.1 COGs: COG0114 Fumarase; InterPro IPR000362:IPR018951:IPR008948:IPR020557; KEGG: bcv:Bcav_3051 fumarate lyase; PFAM: fumarate lyase; Fumarase C-like; SPTR: C5BZW5 fumarate lyase; PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: fumarate hydratase, class II YP_003697642.1 COGs: COG0516 IMP dehydrogenase/GMP reductase; InterProIPR001093:IPR013785:IPR005992:IPR001412:IPR 000169; KEGG: jde:Jden_0641 IMP dehydrogenase family protein; PFAM: IMP dehydrogenase/GMP reductase; SPTR: C1RPF8 IMP dehydrogenase family protein; TIGRFAM: IMP dehydrogenase family protein; PFAM: IMP dehydrogenase / GMP reductase domain; TIGRFAM: IMP dehydrogenase family protein YP_003697643.1 COGs: COG0847 DNA polymerase III subunit epsilon and related 3'-5' exonuclease; InterPro IPR013520:IPR006055:IPR012337; KEGG: jde:Jden_0640 exonuclease RNase T and DNA polymerase III; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; SPTR: D0WP21 DNA polymerase III subunit epsilon; PFAM: exonuclease YP_003697644.1 COGs: COG3634 Alkyl hydroperoxide reductase large subunit; InterProIPR012081:IPR002109:IPR013027:IPR012335:IPR 012336:IPR000103:IPR008255; KEGG: nar:Saro_1718 pyridine nucleotide-disulphide oxidoreductase, class-II, active site; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Q3KC40 Alkyl hydroperoxide reductase subunit; TIGRFAM: alkyl hydroperoxide reductase subunit F; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase subunit F YP_003697645.1 COGs: COG0450 peroxiredoxin; InterProIPR017936:IPR000866:IPR019479:IPR012335:IPR 017559:IPR012336; KEGG: svi:Svir_21220 peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; peroxiredoxin-like; SPTR: C7MW35 peroxiredoxin; TIGRFAM: peroxiredoxin; manually curated; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; TIGRFAM: peroxiredoxin YP_003697646.1 COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR001093:IPR013785:IPR015875; KEGG: bfa:Bfae_08690 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; PRIAM: GMP reductase; SPTR: A7B9H7 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_003697647.1 InterPro IPR003482; KEGG: kse:Ksed_07590 transcription factor WhiB; PFAM: transcription factor WhiB; SPTR: C0W0U7 transcription factor WhiB; PFAM: transcription factor WhiB YP_003697648.1 COGs: COG0234 Co-chaperonin GroES (HSP10); InterPro IPR020818:IPR011032:IPR001476:IPR018369; KEGG: bcv:Bcav_3058 chaperonin Cpn10; PFAM: chaperonin Cpn10; SPTR: D0WP39 chaperonin groES; PFAM: chaperonin 10 Kd subunit YP_003697649.1 KEGG: krh:KRH_06700 hypothetical protein; SPTR: D0WP40 SAM-dependent methyltransferase YP_003697650.1 COGs: COG0533 metal-dependent protease with chaperone activity; InterPro IPR000905:IPR017861:IPR000408:IPR017860; KEGG: bcv:Bcav_3068 metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: D0WP41 glycoprotease GCP; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: glycoprotease family; TIGRFAM: metalloendopeptidase, , glycoprotease family YP_003697651.1 COGs: COG0479 succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterProIPR017896:IPR001450:IPR012675:IPR012285:IPR 004489:IPR009051:IPR001041:IPR006058:IPR017900; KEGG: tfu:Tfu_2451 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: D0WP49 fumarate reductase, iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003697652.1 COGs: COG1053 succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953:IPR004112:IPR011280:IPR015939; KEGG: nca:Noca_3552 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PRIAM: succinate dehydrogenase; SPTR: A7B9J2 uncharacterized protein; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup YP_003697653.1 InterPro IPR011138; KEGG: tfu:Tfu_2453 succinate dehydrogenase subunit C; SPTR: D0WP51 succinate dehydrogenase subunit; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_003697654.1 COGs: COG0456 acetyltransferase; InterPro IPR000182:IPR016181; KEGG: bcv:Bcav_3070 ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: D0WP52 ribosomal-protein-alanine acetyltransferase; PFAM: acetyltransferase (GNAT) family YP_003697655.1 COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: xce:Xcel_0675 peptidase M22 glycoprotease; PFAM: peptidase M22 glycoprotease; SPTR: D0WP53 Universal bacterial protein YeaZ; PFAM: glycoprotease family YP_003697656.1 KEGG: dps:DP3064 hypothetical protein; SPTR: D0WP54 50S ribosomal protein L12P YP_003697657.1 COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: xce:Xcel_0674 protein of unknown function UPF0079; PFAM: protein of unknown function UPF0079; SPTR: D0WP55 ATP/GTP hydrolase; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: conserved hypothetical nucleotide-binding protein YP_003697658.1 COGs: COG0787 alanine racemase; InterProIPR001608:IPR011079:IPR000821:IPR009006:IPR 020622; KEGG: bcv:Bcav_3073 alanine racemase; PFAM: alanine racemase; PRIAM: alanine racemase; SPTR: D0WP56 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase, C-terminal domain; alanine racemase, N-terminal domain; TIGRFAM: alanine racemase YP_003697659.1 COGs: COG0063 sugar kinase; InterPro IPR000631; KEGG: bcv:Bcav_3074 carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; SPTR: C5BZY8 carbohydrate kinase, YjeF related protein; PFAM: carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related YP_003697660.1 COGs: COG0449 glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR017932:IPR000583:IPR001347:IPR005855; KEGG: jde:Jden_0623 glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; SPTR: D0WP58 glutamine-fructose-6-phosphate transaminase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: SIS domain; glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_003697661.1 COGs: COG1072 Panthothenate kinase; InterPro IPR004566; KEGG: xce:Xcel_0666 pantothenate kinase; SPTR: A7B9K0 uncharacterized protein; TIGRFAM: pantothenate kinase; PFAM: phosphoribulokinase / Uridine kinase family; TIGRFAM: pantothenate kinase, bacterial type YP_003697662.1 COGs: COG1109 phosphomannomutase; InterProIPR005844:IPR005845:IPR005846:IPR005843:IPR 016055:IPR006352:IPR005841; KEGG: blt:Balat_1326 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: D0WP66 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase YP_003697663.1 COGs: COG0103 ribosomal protein S9; InterPro IPR000754:IPR014721:IPR020568:IPR020574; KEGG: xce:Xcel_0662 ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: A7B9L2 30S ribosomal protein S9; PFAM: ribosomal protein S9/S16 YP_003697664.1 COGs: COG0102 ribosomal protein L13; InterPro IPR005822:IPR005823; KEGG: krh:KRH_06460 50S ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: C1RK38 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type YP_003697665.1 COGs: COG0101 Pseudouridylate synthase; InterProIPR001406:IPR020097:IPR020094:IPR020095:IPR 020103; KEGG: bfa:Bfae_23260 pseudouridylate synthase I; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; PRIAM: tRNA-pseudouridine synthase I; SPTR: D0WP76 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_003697666.1 InterPro IPR000600; KEGG: xce:Xcel_0657 ROK family protein; PFAM: ROK family protein; SPTR: D0WP77 ROK protein; manually curated; PFAM: ROK family YP_003697667.1 KEGG: hypothetical protein; SPTR: Q55C46 uncharacterized protein YP_003697668.1 COGs: COG0203 ribosomal protein L17; InterPro IPR000456; KEGG: xce:Xcel_0655 ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: D0WP86 ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_003697669.1 COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; InterProIPR011261:IPR011262:IPR011260:IPR011773:IPR 011263:IPR009025; KEGG: tcu:Tcur_4290 DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase subunit alpha domain protein; SMART: RNA polymerase RpoA/D/Rpb3-type; SPTR: D0WP87 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, subunit alpha; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, subunit alpha, bacterial and chloroplast-type YP_003697670.1 COGs: COG0100 ribosomal protein S11; InterPro IPR001971:IPR019981:IPR018102; KEGG: cdi:DIP0547 30S ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: D0WP88 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11 YP_003697671.1 COGs: COG0099 ribosomal protein S13; InterPro IPR001892:IPR019980:IPR010979:IPR018269; KEGG: cai:Caci_0961 ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: C0W6F2 30S ribosomal protein; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13 YP_003697672.1 InterPro IPR000473; KEGG: sma:SAV_4950 50S ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: C0W6F1 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; manually curated; PFAM: ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_003697673.1 COGs: COG0361 translation initiation factor 1 (IF-1); InterPro IPR006196:IPR012340:IPR004368:IPR016027; KEGG: rmu:RMDY18_05040 translation initiation factor 1; PFAM: S1 IF1 family protein; SPTR: D0WP91 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1 YP_003697674.1 COGs: COG2440 Ferredoxin-like protein; InterPro IPR012206:IPR017896; KEGG: dsy:DSY3795 hypothetical protein; SPTR: D0WNZ6 Ferredoxin YP_003697675.1 COGs: COG0644 dehydrogenase (flavoprotein); InterPro IPR006076:IPR003042; KEGG: pac:PPA2212 electron transfer flavoprotein-quinone oxidoreductase (FixC protein); PFAM: FAD dependent oxidoreductase; PRIAM: electron-transferring-flavoprotein dehydrogenase; SPTR: D0WNZ7 FixC protein; PFAM: FAD dependent oxidoreductase YP_003697676.1 COGs: COG2025 electron transfer flavoprotein alpha subunit; InterPro IPR001308:IPR014731; KEGG: pac:PPA2213 electron transfer flavoprotein, carnitine metabolism (FixB protein); PFAM: electron transfer flavoprotein subunit alpha; SPTR: D0WNZ8 electron transfer flavoprotein, subunit alpha; PFAM: electron transfer flavoprotein domain; electron transfer flavoprotein FAD-binding domain YP_003697677.1 COGs: COG2086 electron transfer flavoprotein beta subunit; InterPro IPR012255:IPR014730:IPR014729; KEGG: pac:PPA2214 electron transfer flavoprotein (FixA protein); PFAM: electron transfer flavoprotein alpha/beta-subunit; SPTR: D0WNZ9 electron transfer flavoprotein; PFAM: electron transfer flavoprotein domain YP_003697678.1 InterPro IPR001647:IPR012287:IPR009057; KEGG: tfu:Tfu_1467 hypothetical protein; PFAM: regulatory protein TetR; SPTR: D0WP01 transcriptional regulatory protein, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_003697679.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: pmx:PERMA_1508 beta-lactamase; SPTR: D0WP02 metallo-beta-lactamase family protein; PFAM: metallo-beta-lactamase superfamily YP_003697680.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR005828:IPR016196:IPR002345:IPR005829; KEGG: drm:Dred_0578 general substrate transporter; PFAM: general substrate transporter; SPTR: A4J217 general substrate transporter; PFAM: Sugar (and other) transporter YP_003697681.1 InterPro IPR002539; KEGG: drm:Dred_0577 dehydratase; PFAM: MaoC domain protein dehydratase; PRIAM:3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-ch olest-24-enoyl-CoAhydratase; SPTR: D0WP03 MaoC like domain protein; PFAM: MaoC like domain YP_003697682.1 COGs: COG0318 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR017871; KEGG: ele:Elen_1832 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: D0WP04 CoA ligase; PFAM: AMP-binding enzyme YP_003697683.1 COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: ele:Elen_1833 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: D0WP05 Crotonobetainyl-CoA:carnitine CoA-transferase; PFAM: CoA-transferase family III YP_003697684.1 COGs: COG1960 acyl-CoA dehydrogenase; InterProIPR006092:IPR006091:IPR006090:IPR013786:IPR 013764:IPR009100:IPR009075; KEGG: drm:Dred_0570 crotonobetainyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: D0WP06 Crotonobetainyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase, C-terminal domain; acyl-CoA dehydrogenase, middle domain; acyl-CoA dehydrogenase, N-terminal domain YP_003697685.1 COGs: COG0657 esterase/lipase; InterPro IPR013094:IPR002168; KEGG: ele:Elen_1835 alpha/beta hydrolase; PFAM: alpha/beta hydrolase; SPTR: D0WP07 acetyl esterase; PFAM: alpha/beta hydrolase fold YP_003697686.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701:IPR016196; KEGG: ele:Elen_1836 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: D0WP08 transporter major facilitator family; PFAM: Major Facilitator Superfamily YP_003697687.1 COGs: COG0024 methionine aminopeptidase; InterPro IPR000994:IPR002467:IPR001714; KEGG: mlu:Mlut_16950 methionine aminopeptidase, type I; PFAM: peptidase M24; PRIAM: Methionyl aminopeptidase; SPTR: D0WPA8 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_003697688.1 COGs: COG0563 adenylate kinase and related kinase; InterPro IPR000850:IPR006259; KEGG: mlu:Mlut_16960 adenylate kinase; PFAM: adenylate kinase; SPTR: P33107 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; TIGRFAM: adenylate kinases YP_003697689.1 COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: xce:Xcel_0647 preprotein translocase, SecY subunit; PFAM: SecY protein; SPTR: D0WPB0 Preprotein translocase, SecY subunit; TIGRFAM: preprotein translocase, SecY subunit; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit YP_003697690.1 COGs: COG0200 ribosomal protein L15; InterPro IPR001196:IPR005749; KEGG: rmu:RMDY18_04990 ribosomal protein L15; PFAM: ribosomal protein L15; SPTR: C6R3K6 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_003697691.1 COGs: COG1841 ribosomal protein L30/L7E; InterPro IPR005996:IPR000517:IPR016082:IPR018038; KEGG: sen:SACE_6818 50S ribosomal protein L30; PFAM: ribosomal protein L30; SPTR: A4FPK7 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle YP_003697692.1 COGs: COG0098 ribosomal protein S5; InterProIPR013810:IPR005324:IPR014720:IPR014721:IPR 005712:IPR020568:IPR018192; KEGG: xce:Xcel_0644 ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; ribosomal protein S5; SPTR: D0WPB3 ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5, N-terminal domain; ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type YP_003697693.1 COGs: COG0256 ribosomal protein L18; InterPro IPR005484:IPR004389; KEGG: xce:Xcel_0643 ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; SPTR: D0WPB4 ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_003697694.1 COGs: COG0097 ribosomal protein L6P/L9E; InterPro IPR000702:IPR020040:IPR019906:IPR002358; KEGG: art:Arth_2961 50S ribosomal protein L6P; PFAM: ribosomal protein L6, alpha-beta domain; SPTR: A0JZ70 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type YP_003697695.1 COGs: COG0096 ribosomal protein S8; InterPro IPR000630; KEGG: kra:Krad_0702 ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: D0WPB6 ribosomal protein S8; PFAM: ribosomal protein S8 YP_003697696.1 COGs: COG0199 ribosomal protein S14; InterPro IPR001209:IPR018271; KEGG: pac:PPA1849 30S ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: C2BS70 30S ribosomal protein S14; PFAM: ribosomal protein S14p/S29e YP_003697697.1 COGs: COG0094 ribosomal protein L5; InterPro IPR002132; KEGG: sgr:SGR_2822 50S ribosomal protein L5; PFAM: ribosomal protein L5; SPTR: C9N616 ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; ribosomal protein L5 YP_003697698.1 COGs: COG0198 ribosomal protein L24; InterPro IPR005824:IPR003256:IPR008991:IPR005825; KEGG: bcv:Bcav_3132 ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; SPTR: D0WPB9 ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_003697699.1 COGs: COG0093 ribosomal protein L14; InterPro IPR000218:IPR005745:IPR019972; KEGG: mgi:Mflv_5037 ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: C0VZ19 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_003697700.1 COGs: COG0186 ribosomal protein S17; InterProIPR000266:IPR012340:IPR019984:IPR016027:IPR 019979; KEGG: gbr:Gbro_3749 30S ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: D0WPC1 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17 YP_003697701.1 InterPro IPR001854; KEGG: bcv:Bcav_3135 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: D0WPC2 ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_003697702.1 COGs: COG0197 ribosomal protein L16/L10E; InterPro IPR016180:IPR000114:IPR020798; KEGG: xce:Xcel_0634 ribosomal protein L16; PFAM: ribosomal protein L10e/L16; SPTR: D0WPC3 ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_003697703.1 COGs: COG0092 ribosomal protein S3; InterProIPR004044:IPR008282:IPR001351:IPR015946:IPR 005704:IPR004087:IPR009019:IPR018280; KEGG: bfa:Bfae_23750 30S ribosomal protein S3P; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; ribosomal protein S3 domain; SMART: KH domain protein; SPTR: D0WPC4 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: KH domain; ribosomal protein S3, C-terminal domain; ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type YP_003697704.1 COGs: COG0091 ribosomal protein L22; InterPro IPR001063:IPR005727:IPR018260; KEGG: xce:Xcel_0632 ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: A7B9N9 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type YP_003697705.1 COGs: COG0185 ribosomal protein S19; InterPro IPR002222:IPR005732; KEGG: xce:Xcel_0631 ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: D0WPC6 ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle YP_003697706.1 COGs: COG0090 ribosomal protein L2; InterProIPR002171:IPR012340:IPR014722:IPR005880:IPR 008991:IPR016027; KEGG: jde:Jden_0590 ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: C7R0U7 ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal proteins L2, RNA binding domain; ribosomal proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_003697707.1 COGs: COG0089 ribosomal protein L23; InterPro IPR013025:IPR012677:IPR012678; KEGG: jde:Jden_0589 ribosomal protein L25/L23; PFAM: ribosomal protein L25/L23; SPTR: D0WPC8 ribosomal protein L23; PFAM: ribosomal protein L23 YP_003697708.1 COGs: COG0088 ribosomal protein L4; InterPro IPR002136; KEGG: xce:Xcel_0628 ribosomal protein L4/L1e; PFAM: ribosomal protein L4/L1e; SPTR: D0WPC9 ribosomal protein L4/L1 family protein; PFAM: ribosomal protein L4/L1 family YP_003697709.1 COGs: COG0087 ribosomal protein L3; InterPro IPR000597:IPR019927:IPR009000:IPR019926; KEGG: jde:Jden_0587 ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: D0WPD0 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_003697710.1 COGs: COG0051 ribosomal protein S10; InterPro IPR001848:IPR005731:IPR018268; KEGG: kse:Ksed_20880 30S ribosomal protein S10P; PFAM: ribosomal protein S10; SPTR: D0WPD1 ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_003697711.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795:IPR004161:IPR004160:IPR004541:IPR 005225:IPR009001:IPR009000; KEGG: krh:KRH_06140 elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain protein; SPTR: D0WPD5 translation elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_003697712.1 COGs: COG0480 translation elongation factors (GTPase); InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 014721:IPR004540:IPR005225:IPR020568:IPR009000:IPR009022; KEGG: bcv:Bcav_3146 translation elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein; SPTR: D0WPD6 translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_003697713.1 COGs: COG0049 ribosomal protein S7; InterPro IPR000235:IPR005717; KEGG: xce:Xcel_0623 ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: D0WPD7 ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle YP_003697714.1 COGs: COG0048 ribosomal protein S12; InterPro IPR006032:IPR012340:IPR005679:IPR016027; KEGG: ace:Acel_0301 30S ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: D0WPD8 ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle YP_003697715.1 KEGG: cdi:DIP2121 hypothetical protein; SPTR: D0WPQ4 PAS/PAC domain protein; TIGRFAM: PAS domain S-box YP_003697716.1 COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR012754:IPR006592; KEGG: bcv:Bcav_3154 DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; SMART: RNA polymerase I subunit A domain protein; SPTR: D0WPE0 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form YP_003697717.1 COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243:IPR007121; KEGG: xce:Xcel_0620 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase subunit beta; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase subunit beta, external 1 domain; RNA polymerase Rpb2 domain 7; SPTR: D0WPE1 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase subunit beta external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase subunit beta; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase subunit beta YP_003697718.1 COGs: COG0222 ribosomal protein L7/L12; InterPro IPR013823:IPR014719:IPR000206:IPR008932; KEGG: mlu:Mlut_17260 50S ribosomal protein L12P; PFAM: ribosomal protein L7/L12; SPTR: C5CC72 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12 YP_003697719.1 COGs: COG0244 ribosomal protein L10; InterPro IPR001790:IPR002363; KEGG: pac:PPA1887 50S ribosomal protein L10; PFAM: ribosomal protein L10; SPTR: D0WPE6 ribosomal protein L10; PFAM: ribosomal protein L10 YP_003697720.1 COGs: COG0572 Uridine kinase; InterPro IPR006083:IPR000764:IPR017975; KEGG: cbt:CLH_0992 uridine kinase; PFAM: phosphoribulokinase/uridine kinase; SPTR: D0WPE8 Uridine kinase; TIGRFAM: uridine kinase; PFAM: phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase YP_003697721.1 COGs: COG0081 ribosomal protein L1; InterPro IPR002143:IPR016094:IPR005878; KEGG: jde:Jden_0577 ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: C0W6A1 ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast YP_003697722.1 COGs: COG0080 ribosomal protein L11; InterPro IPR020784:IPR020783:IPR006519:IPR000911; KEGG: jde:Jden_0576 ribosomal protein L11; PFAM: ribosomal protein L11-like; SMART: ribosomal protein L11; SPTR: D0WPF6 ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11, RNA binding domain; ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_003697723.1 COGs: COG0250 transcription antiterminator; InterPro IPR006645:IPR014722:IPR001062:IPR008991; KEGG: art:Arth_2995 NusG antitermination factor; PFAM: NGN domain protein; SMART: NGN domain protein; SPTR: D0WPF7 transcription termination/antitermination factor NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription termination factor nusG; TIGRFAM: transcription termination/antitermination factor NusG YP_003697724.1 InterPro IPR001901:IPR005807; KEGG: aau:AAur_2967 preprotein translocase subunit SecE; PFAM: protein secE/sec61-gamma protein; SPTR: C2BUX9 Preprotein translocase subunit SecE; TIGRFAM: preprotein translocase, SecE subunit; PFAM: SecE/Sec61-subunit gammas of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_003697725.1 COGs: COG0436 aspartate/tyrosine/aromatic aminotransferase; InterProIPR004839:IPR015421:IPR015424:IPR001176:IPR 004838; KEGG: bcv:Bcav_3164 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: D0WPG0 aspartate transaminase; PFAM: Aminotransferase class I and II YP_003697726.1 KEGG: aav:Aave_2528 hydrophobe/amphiphile efflux-1 (HAE1) family protein; SPTR: C2B285 uncharacterized protein YP_003697727.1 InterPro IPR002525:IPR003346; KEGG: mlu:Mlut_12160 transposase; PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; SPTR: C0W956 transposase, IS111A/IS1328/IS1533 (Fragment); PFAM: transposase IS116/IS110/IS902 family; transposase YP_003697728.1 InterPro IPR002575:IPR011009; KEGG: jde:Jden_2348 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: D0WPG1 phosphotransferase enzyme family protein; PFAM: phosphotransferase enzyme family YP_003697729.1 COGs: COG1816 adenosine deaminase; InterPro IPR001365:IPR006330:IPR013838:IPR006650; KEGG: bcv:Bcav_3173 adenosine deaminase; PFAM: adenosine/AMP deaminase; PRIAM: adenosine deaminase; SPTR: D0WPG6 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; TIGRFAM: adenosine deaminase YP_003697730.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: cmi:CMM_0030 hydrolase/acyltransferase; PFAM: alpha/beta hydrolase fold; SPTR: D1BAH6 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold YP_003697731.1 KEGG: ach:Achl_2847 hypothetical protein; SPTR: D1BAH5 uncharacterized protein; PFAM: PGAP1-like protein YP_003697732.1 COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterProIPR016166:IPR006094:IPR011601:IPR016167:IPR 016169; KEGG: bcv:Bcav_3178 UDP-N-acetylmuramate dehydrogenase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; SPTR: D0WPG7 UDP-N-acetylmuramate dehydrogenase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_003697733.1 COGs: COG0267 ribosomal protein L33; InterPro IPR001705:IPR018264; KEGG: bcv:Bcav_3184 ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: D0WPG8 ribosomal protein L33; TIGRFAM: ribosomal protein L33; manually curated; PFAM: ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_003697734.1 COGs: COG1666 conserved hypothetical protein; InterPro IPR007551; KEGG: xce:Xcel_0508 protein of unknown function DUF520; PFAM: protein of unknown function DUF520; SPTR: D0WPG9 N-(5'phosphoribosyl)anthranilate isomerase; PFAM: protein of unknown function (DUF520) YP_003697735.1 COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR000759; KEGG: bcv:Bcav_3195 ferredoxin--NADP(+) reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: D0WPH0 Ferredoxin--NADP reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_003697736.1 COGs: COG1544 ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: bcv:Bcav_1244 sigma 54 modulation protein/ribosomal protein S30EA; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; SPTR: D0WPH1 S30AE family protein; TIGRFAM: ribosomal subunit interface protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein YP_003697737.1 COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: bcv:Bcav_1243 hypothetical protein; PFAM: phosphoribosyltransferase; SPTR: D0WPH2 Competence protein F; PFAM: phosphoribosyl transferase domain YP_003697738.1 InterPro IPR019606:IPR018910; KEGG: bcv:Bcav_1242 lipoprotein LpqB; PFAM: Lipoprotein LpqB, GerMN domain; Lipoprotein LpqB, beta-propeller domain-like; SPTR: D0WPH3 lipoprotein LpqB; PFAM: Lipoprotein LpqB beta-propeller domain; sporulation and spore germination YP_003697739.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR003660:IPR003661:IPR003594:IPR 009082:IPR004358; KEGG: bcv:Bcav_1241 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SPTR: D0WPH4 Sensor histidine kinase MtrB; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003697740.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006; KEGG: mva:Mvan_1752 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: D0WPH5 DNA-binding response regulator; PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal YP_003697741.1 KEGG: bcv:Bcav_1215 hypothetical protein; SPTR: D0WPH8 uncharacterized protein; manually curated; PFAM: protein of unknown function (DUF3499) YP_003697742.1 KEGG: xce:Xcel_2545 hypothetical protein; SPTR: D0WPH9 uncharacterized protein; manually curated YP_003697743.1 KEGG: bcv:Bcav_1208 hypothetical protein; SPTR: D0WPI0 uncharacterized protein YP_003697744.1 COGs: COG1216 glycosyltransferase; KEGG: bcv:Bcav_1207 glycosyl transferase domain-containing protein; SPTR: D0WPI1 glycosyl transferase domain protein YP_003697745.1 InterPro IPR003482; KEGG: ace:Acel_0457 transcription factor WhiB; PFAM: transcription factor WhiB; SPTR: D0WPI2 transcription factor WhiB; PFAM: transcription factor WhiB YP_003697746.1 KEGG: xce:Xcel_2550 hypothetical protein; SPTR: D1BWZ7 uncharacterized protein; TIGRFAM: conserved hypothetical protein TIGR03089 YP_003697747.1 COGs: COG1316 transcriptional regulator; InterPro IPR004474; KEGG: bcv:Bcav_1166 cell envelope-related protein transcriptional attenuator; PFAM: cell envelope-related transcriptional attenuator; SPTR: C0W8B2 transcriptional regulator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_003697748.1 COGs: COG1316 transcriptional regulator; InterPro IPR004474; KEGG: bcv:Bcav_1165 cell envelope-related protein transcriptional attenuator; PFAM: cell envelope-related transcriptional attenuator; SPTR: D0WPL0 transcriptional regulator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_003697749.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR003660:IPR003661:IPR003594:IPR 009082:IPR004358; KEGG: bcv:Bcav_1156 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: D0WPL5 two-component system histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003697750.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006; KEGG: bcv:Bcav_1155 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; SPTR: A7B947 uncharacterized protein; PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal YP_003697751.1 COGs: COG2114 adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054:IPR009061; KEGG: bcv:Bcav_1154 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; PRIAM: adenylate cyclase; SPTR: D0WPL7 adenylate cyclase; PFAM: adenylate and Guanylate cyclase catalytic domain YP_003697752.1 COGs: COG4805 conserved hypothetical protein; InterPro IPR010281; KEGG: bcv:Bcav_1144 protein of unknown function DUF885; PFAM: protein of unknown function DUF885; SPTR: D0WPL9 uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF885) YP_003697753.1 COGs: COG0424 nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; KEGG: saq:Sare_0794 maf protein; PFAM: Maf family protein; SPTR: D0WPM0 Maf protein; TIGRFAM: maf protein; PFAM: Maf-like protein; TIGRFAM: MAF protein YP_003697754.1 COGs: COG0372 citrate synthase; InterProIPR002020:IPR016142:IPR010953:IPR016141:IPR 019810; KEGG: ami:Amir_0528 citrate synthase I; PFAM: citrate synthase; PRIAM: citrate (Si)-synthase; SPTR: C0W847 citrate synthase; TIGRFAM: citrate synthase I; PFAM: citrate synthase; TIGRFAM: citrate synthase I (hexameric type) YP_003697755.1 InterPro IPR017896:IPR001450:IPR000813:IPR017900; KEGG: lxx:Lxx16240 ferredoxin; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Q6ADY3 Ferredoxin; PFAM: 4Fe-4S binding domain YP_003697756.1 COGs: COG2720 Uncharacterized vancomycin resistance protein; InterPro IPR007391; KEGG: jde:Jden_0796 van Willebrand factor A; PFAM: VanW family protein; SPTR: D0WPN1 VanW like protein; PFAM: peptidoglycan binding domain; VanW like protein YP_003697757.1 KEGG: nca:Noca_3804 hypothetical protein; SPTR: D0WPN2 Anion transporter YP_003697758.1 COGs: COG1217 membrane GTPase involved in stress response; InterProIPR000795:IPR004161:IPR000640:IPR005225:IPR 006298:IPR009022:IPR009000; KEGG: jde:Jden_0793 GTP-binding protein TypA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; SPTR: D0WPN3 GTP-binding protein TypA/BipA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain YP_003697759.1 KEGG: lxx:Lxx16370 integral membrane protein; SPTR: Q6ADX4 integral membrane protein; PFAM: protein of unknown function (DUF2581) YP_003697760.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterProIPR003439:IPR017940:IPR001140:IPR003593:IPR 011527:IPR001412; KEGG: bcv:Bcav_3042 ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane protein; SMART: AAA ATPase; SPTR: C2BVE7 ABC superfamily ATP binding cassette transporter ATP-binding and permease; PFAM: ABC transporter transmembrane protein; ABC transporter YP_003697761.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterProIPR003439:IPR017940:IPR001140:IPR011527:IPR 017871; KEGG: bcv:Bcav_3041 ABC transporter transmembrane protein; PFAM: ABC transporter transmembrane protein; ABC transporter; SPTR: D0WKT9 ABC transporter; PFAM: ABC transporter transmembrane protein; ABC transporter YP_003697762.1 COGs: COG0747 ABC-type dipeptide transporter periplasmic component; InterPro IPR000914; KEGG: pac:PPA1840 extracellular solute-binding transporter, oligopeptide-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: C0VZP4 oligopeptide ABC superfamily ATP binding cassette transporter binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003697763.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transporter ATPase component; InterProIPR003439:IPR013563:IPR010066:IPR003593:IPR 017871; KEGG: cai:Caci_8315 oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; SPTR: C0VZP3 oligopeptide/dipeptide ABC superfamily ATP binding cassette transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide transporter C-terminal region; TIGRFAM: phosphonate C-P lyase system protein PhnK; oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal domain YP_003697764.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transporters permeases; InterPro IPR000515; KEGG: sma:SAV_3046 peptide ABC transporter permease; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: C0W836 peptide ABC superfamily ATP binding cassette transporter permease; PFAM: Binding-protein-dependent transporter inner membrane component YP_003697765.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transporters permeases; InterPro IPR000515; KEGG: sro:Sros_7099 binding-protein-dependent transporters inner membrane component; PFAM: binding-protein-dependent transporters inner membrane component; SPTR: C0VZP1 peptide ABC superfamily ATP binding cassette transporter permease protein; PFAM: Binding-protein-dependent transporter inner membrane component YP_003697766.1 COGs: COG0321 Lipoate-protein ligase B; InterPro IPR004143:IPR000544; KEGG: cms:CMS_1882 lipoyltransferase; PFAM: biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: D0WPN9 Lipoyl(Octanoyl) transferase; TIGRFAM: lipoate-protein ligase B; manually curated; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B YP_003697767.1 COGs: COG0320 Lipoate synthase; InterPro IPR003698:IPR007197:IPR013785:IPR006638; KEGG: rop:ROP_08810 lipoyl synthase; PFAM: radical SAM protein; PRIAM: Lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: D0WPP0 Lipoyl synthase; TIGRFAM: lipoic acid synthetase; PFAM: radical SAM superfamily; TIGRFAM: lipoate synthase YP_003697768.1 COGs: COG0318 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: sen:SACE_2795 feruloyl-CoA synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: D0WPP1 Fatty-acid--CoA ligase; PFAM: AMP-binding enzyme YP_003697769.1 COGs: COG1362 aspartyl aminopeptidase; InterPro IPR001948; KEGG: pac:PPA0574 aminopeptidase 2; PFAM: peptidase M18 aminopeptidase I; PRIAM: aspartyl aminopeptidase; SPTR: Q6AA87 M18 family aminopeptidase; PFAM: Aminopeptidase I zinc metalloprotease (M18) YP_003697770.1 KEGG: kse:Ksed_02110 NUDIX family protein; SPTR: C7NJG7 NUDIX family protein YP_003697771.1 InterPro IPR000387; KEGG: gym:GYMC10_3221 dual specificity protein phosphatase; SPTR: A0JXC1 Dual specificity protein phosphatase; PFAM: protein-tyrosine phosphatase YP_003697772.1 COGs: COG2838 Monomeric isocitrate dehydrogenase; InterPro IPR004436; KEGG: sma:SAV_7214 isocitrate dehydrogenase; PFAM: isocitrate dehydrogenase NADP-dependent monomeric type; PRIAM: isocitrate dehydrogenase (NADP(+)); SPTR: Q826H9 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type YP_003697773.1 KEGG: krh:KRH_07740 hypothetical protein; SPTR: C6RBJ7 uncharacterized protein YP_003697774.1 COGs: COG0039 malate/lactate dehydrogenase; InterProIPR001557:IPR001236:IPR016040:IPR015955:IPR 011304:IPR018177; KEGG: art:Arth_3978 malate dehydrogenase (NAD); PFAM: lactate/malate dehydrogenase; SPTR: A0K233 malate dehydrogenase (NAD); TIGRFAM: L-lactate dehydrogenase; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: L-lactate dehydrogenase YP_003697775.1 COGs: COG3971 2-keto-4-pentenoate hydratase; InterPro IPR002529:IPR011234; KEGG: bja:blr1240 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: fumarylacetoacetate hydrolase; PRIAM: 2-oxopent-4-enoate hydratase; SPTR: Q89V18 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_003697776.1 InterPro IPR000073:IPR002410; KEGG: cef:CE0596 prolyl aminopeptidase; PFAM: alpha/beta hydrolase fold; SPTR: Q8FS10 prolyl aminopeptidase; PFAM: alpha/beta hydrolase fold YP_003697777.1 KEGG: krh:KRH_21190 hypothetical protein; SPTR: C2BVW5 uncharacterized protein YP_003697778.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR010161:IPR002933:IPR011650:IPR001261; KEGG: pwa:Pecwa_2931 peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20; PRIAM: Tripeptide aminopeptidase; SPTR: C0WE72 peptidase T; TIGRFAM: peptidase T; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain; TIGRFAM: peptidase T YP_003697779.1 COGs: COG1263 phosphotransferase system IIC components glucose/maltose/N-acetylglucosamine-specific; InterProIPR001127:IPR001996:IPR013013:IPR018113:IPR 003352:IPR011055; KEGG: cdi:DIP1151 PTS system, glucose-specific IIABC component; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; phosphotransferase system EIIB/cysteine, phosphorylation site; PRIAM: protein-N(pi)-phosphohistidine--sugar phosphotransferase; SPTR: C2CRZ1 protein-N(Pi)-phosphohistidine--sugar phosphotransferase; TIGRFAM: PTS system, glucose subfamily, IIsubunit alpha; PFAM: phosphotransferase system, EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; phosphotransferase system, EIIB; TIGRFAM: PTS system, glucose subfamily, IIA component YP_003697780.1 COGs: COG3711 transcriptional antiterminator; InterPro IPR011608:IPR004341; KEGG: bad:BAD_0367 transcription antiterminator LicT; PFAM: CAT RNA-binding domain protein; PRD domain protein; SPTR: B1S6B5 uncharacterized protein; PFAM: CAT RNA binding domain; PRD domain YP_003697781.1 COGs: COG1080 phosphoenolpyruvate-protein kinase (PTS system EI component); InterProIPR008731:IPR008279:IPR000121:IPR015813:IPR 006318; KEGG: pac:PPA0351 phosphoenolpyruvate-protein kinase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; SPTR: C2GEA4 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase YP_003697782.1 COGs: COG1925 phosphotransferase system HPr-related protein; InterPro IPR000032:IPR005698:IPR001020; KEGG: cef:CE1830 PTS phosphohistidine-containing protein; PFAM: phosphoryl transfer system HPr; SPTR: A7BEU7 uncharacterized protein; TIGRFAM: phosphocarrier, HPr family; PFAM: PTS HPr component phosphorylation site; TIGRFAM: phosphotransferase System HPr (HPr) Family YP_003697783.1 COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: cpy:Cphy_1114 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: C9CNV8 Flavoprotein; PFAM: NADPH-dependent FMN reductase YP_003697784.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: bba:Bd0919 phage shock protein; PFAM: rhodanese; SMART: rhodanese; SPTR: C0W0D3 rhodanese; PFAM: Rhodanese-like domain YP_003697785.1 InterPro IPR000421:IPR008979; KEGG: coc:Coch_0195 glycoside hydrolase family 2 TIM barrel; PFAM: coagulation factor 5/8 type domain protein; SPTR: A3TGR0 membrane protein; PFAM: F5/8 type C domain YP_003697786.1 InterPro IPR008979; KEGG: pac:PPA1821 sialidase; SPTR: Q6A6R6 sialidase YP_003697787.1 COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR002177:IPR008331:IPR012347:IPR009078; KEGG: pac:PPA2134 starvation-inducible DNA-binding protein or fine tangled pili major subunit; PFAM: ferritin; SPTR: A7BBG2 uncharacterized protein; PFAM: Ferritin-like domain YP_003697788.1 KEGG: cur:cur_1084 hypothetical protein; SPTR: B1VH03 uncharacterized protein YP_003697789.1 InterPro IPR003675; KEGG: bcz:BCZK3196 CAAX amino terminal protease family protein; PFAM: hypothetical protein; SPTR: C7GD25 membrane spanning protein; PFAM: CAAX amino terminal protease family YP_003697790.1 COGs: COG1225 peroxiredoxin; InterPro IPR017936:IPR000866:IPR012335:IPR012336; KEGG: bca:BCE_3632 AhpC/TSA family protein; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: C2MNU3 AhpC/TSA; PFAM: AhpC/TSA family YP_003697791.1 COGs: COG0755 ABC-type transporter involved in cytochrome C biogenesis permease; InterPro IPR002541:IPR017562; KEGG: dhd:Dhaf_3357 cytochrome C biogenesis protein CcsB; PFAM: cytochrome C assembly protein; SPTR: Q0PIF5 cytochrome C biogenesis protein; TIGRFAM: cytochrome C biogenesis protein CcsB; PFAM: cytochrome C assembly protein; TIGRFAM: cytochrome C biogenesis protein CcsB YP_003697792.1 COGs: COG1333 ResB protein required for cytochrome C biosynthesis; InterPro IPR007816; KEGG: gem:GM21_3520 ResB family protein; PFAM: ResB family protein; SPTR: C6E5L7 ResB family protein; PFAM: ResB-like family YP_003697793.1 COGs: COG0785 cytochrome C biogenesis protein; InterPro IPR003834; KEGG: mav:MAV_4618 cytochrome C biogenesis protein transmembrane region; PFAM: cytochrome C biogenesis protein transmembrane region; SPTR: Q73SQ0 CcsA; PFAM: cytochrome C biogenesis protein transmembrane region YP_003697794.1 InterPro IPR019734:IPR013026:IPR013105:IPR011990; KEGG: acp:A2cp1_3178 hypotheticalprotein; PFAM: Tetratricopeptide TPR_2 repeat protein; SPTR: Q1K1D9 Tetratricopeptide TPR_2; PFAM: Tetratricopeptide repeat YP_003697795.1 COGs: COG3303 formate-dependent nitrite reductase periplasmic cytochrome C552 subunit; InterPro IPR003321:IPR011031; KEGG: mxa:MXAN_2209 cytochrome C nitrite reductase, catalytic subunit NrfA; PFAM: cytochrome C552; PRIAM: nitrite reductase (cytochrome; ammonia-forming); SPTR: B4CX41 nitrite reductase (cytochrome; ammonia-forming); PFAM: cytochrome C552 YP_003697796.1 COGs: COG3005 nitrate/TMAO reductase membrane-bound tetraheme cytochrome C subunit; InterPro IPR011031:IPR005126:IPR017571; KEGG: mxa:MXAN_2210 cytochrome C nitrite reductase, small subunit NrfH; PFAM: NapC/NirT cytochrome C domain protein; SPTR: Q1DA91 cytochrome C nitrite reductase, small subunit NrfH; TIGRFAM: cytochrome C nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome C family, N-terminal region; TIGRFAM: cytochrome C nitrate reductase, small subunit YP_003697797.1 COGs: COG0698 ribose 5-phosphate isomerase RpiB; InterPro IPR003500:IPR011860; KEGG: pac:PPA2324 ribose 5-phosphate isomerase; PFAM: ribose/galactose isomerase; SPTR: Q3LFG7 ribose-5-phosphate isomerase 2; TIGRFAM: ribose 5-phosphate isomerase; sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_003697798.1 COGs: COG0235 ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: bcv:Bcav_3273 class II aldolase/adducin family protein; PFAM: class II aldolase/adducin family protein; SPTR: D0YRB2 L-ribulose-5-phosphate 4-epimerase UlaF; PFAM: class II Aldolase and Adducin N-terminal domain YP_003697799.1 COGs: COG1609 transcriptional regulators; InterPro IPR000843:IPR010982; KEGG: sco:SCO5692 transcriptional regulator; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; SPTR: C0W8S7 Regulatory protein LacI family protein; PFAM: Bacterial regulatory proteins, lacI family; family YP_003697800.1 COGs: COG3663 G:T/U mismatch-specific DNA glycosylase; InterPro IPR005122; KEGG: bln:Blon_0119 uracil-DNA glycosylase superfamily; PFAM: uracil-DNA glycosylase superfamily; SPTR: B7GT25 uracil-DNA glycosylase superfamily; PFAM: uracil DNA glycosylase superfamily; TIGRFAM: mismatch-specific thymine-DNA glycosylate (mug) YP_003697801.1 COGs: COG3981 acetyltransferase; InterPro IPR000182:IPR016181; KEGG: krh:KRH_21070 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1RPY2 Predicted acetyltransferase, COG3981; PFAM: acetyltransferase (GNAT) family YP_003697802.1 KEGG: dhd:Dhaf_2491 hypothetical protein; SPTR: C7HA54 uncharacterized protein; PFAM: protein of unknown function (DUF2812) YP_003697803.1 InterPro IPR005149:IPR011991; KEGG: cby:CLM_2307 transcriptional regulator, PadR family; PFAM: transcriptional regulator PadR family protein; SPTR: C1FQA7 transcriptional regulator, PadR family; PFAM: transcriptional regulator PadR-like family YP_003697804.1 KEGG: cdi:DIP0946 hypothetical protein; SPTR: Q6NI33 secreted protein YP_003697805.1 COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: ckp:ckrop_0020 transporter of the neurotransmitter:sodium syporter family; PFAM: sodium:neurotransmitter symporter; SPTR: C4LGC4 transporter; PFAM: Sodium:neurotransmitter symporter family YP_003697806.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; KEGG: rsa:RSal33209_0879 ABC transporter ATP-binding protein; SPTR: A9WQH2 ABC transporter ATP-binding protein; PFAM: adenovirus IVa2 protein YP_003697807.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917:IPR017849:IPR017850; KEGG: bfa:Bfae_28950 arylsulfatase A family protein; PFAM: sulfatase; SPTR: C0W1U3 Sulfatase; PFAM: Sulfatase YP_003697808.1 COGs: COG1609 transcriptional regulators; InterPro IPR000843:IPR010982; KEGG: sth:STH770 LacI family transcriptional repressor; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; SPTR: C0W1U4 uncharacterized protein; PFAM: Bacterial regulatory proteins, lacI family YP_003697809.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR005828:IPR016196:IPR005829; KEGG: kpn:KPN_03142 general substrate transporter; PFAM: general substrate transporter; SPTR: C0W1U5 Major facilitator family protein transporter; PFAM: Sugar (and other) transporter YP_003697810.1 COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: tmz:Tmz1t_1479 radical SAM domain protein; PFAM: radical SAM protein; SPTR: D0YU66 Anaerobic sulfatase-maturating enzyme; PFAM: radical SAM superfamily YP_003697811.1 InterPro IPR002781; KEGG: nml:Namu_0360 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: C0VYF1 membrane permease; PFAM: Sulfite exporter TauE/SafE YP_003697812.1 KEGG: dps:DP0242 hypothetical protein; SPTR: A6E5J8 uncharacterized protein YP_003697813.1 KEGG: mmw:Mmwyl1_1516 hypothetical protein; SPTR: A9EBS5 uncharacterized protein YP_003697814.1 COGs: COG0012 GTPase probable translation factor; InterProIPR004396:IPR002917:IPR013029:IPR012675:IPR 012676:IPR006073; KEGG: bfa:Bfae_22930 GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; SPTR: D0WPX9 GTP-binding protein YchF; TIGRFAM: GTP-binding protein YchF; manually curated; PFAM: GTPase of unknown function; protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF YP_003697815.1 COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: krh:KRH_07130 RmuC family protein; PFAM: protein of unknown function DUF195; SPTR: D0WPY8 ribosomal protein S9; PFAM: RmuC family YP_003697816.1 KEGG: nar:Saro_2594 hypothetical protein; SPTR: Q2G543 uncharacterized protein YP_003697817.1 InterPro IPR001387:IPR010982; KEGG: ppr:PBPRB0292 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Q6LKV5 uncharacterized protein Y2012; PFAM: Helix-turn-helix YP_003697818.1 KEGG: hypothetical protein; SPTR: B0EL31 uncharacterized protein YP_003697819.1 COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: xce:Xcel_0941 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: D0WPZ0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) YP_003697820.1 COGs: COG1570 exonuclease VII large subunit; InterPro IPR004365:IPR020579:IPR003753; KEGG: jde:Jden_0746 exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; SPTR: D0WPZ1 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII large subunit YP_003697821.1 InterPro IPR003761; KEGG: ach:Achl_2551 exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII small subunit; SPTR: D0WPZ2 exodeoxyribonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII small subunit YP_003697822.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: kra:Krad_1118 PfkB domain protein; PFAM: PfkB domain protein; SPTR: A6W717 PfkB domain protein; PFAM: pfkB family carbohydrate kinase YP_003697823.1 COGs: COG0020 undecaprenyl pyrophosphate synthase; InterPro IPR001441:IPR018520; KEGG: xce:Xcel_2629 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: D1BX75 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_003697824.1 COGs: COG1272 membrane protein hemolysin III homolog; InterPro IPR004254:IPR005744; KEGG: xce:Xcel_2630 Hly-III family protein; PFAM: Hly-III family protein; SPTR: D0WPZ5 Channel protein, hemolysin III family; TIGRFAM: channel protein, hemolysin III family; PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family YP_003697825.1 COGs: COG0782 transcription elongation factor; InterPro IPR001437:IPR018151; KEGG: art:Arth_1167 GreA/GreB family elongation factor; PFAM: transcription elongation factor GreA/GreB domain protein; SPTR: A0JU41 GreA/GreB family elongation factor; PFAM: domain; transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_003697826.1 COGs: COG0225 peptide methionine sulfoxide reductase; InterPro IPR002569; KEGG: xce:Xcel_2640 peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; PRIAM: peptide-methionine (S)-S-oxide reductase; SPTR: D0WPZ7 methionine-S-sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase YP_003697827.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: bcv:Bcav_1060 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: D0WQ01 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_003697828.1 COGs: COG4760 membrane protein; InterPro IPR010539; KEGG: jde:Jden_1900 protein of unknown function DUF1112; PFAM: protein of unknown function DUF1112; SPTR: D0WQ03 integral membrane protein YP_003697829.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: cef:CE2584 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: AAA ATPase; SPTR: D0WQ04 bacitracin transport ATP-binding protein BcrA; PFAM: ABC transporter YP_003697830.1 KEGG: sro:Sros_2509 hypothetical protein; SPTR: D0WQ05 ABC transporter integral membrane protein YP_003697831.1 COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: aau:AAur_1266 exopolyphosphatase (ppx); PFAM: Ppx/GppA phosphatase; SPTR: D0WQ07 phosphatase, Ppx/GppA family; PFAM: Ppx/GppA phosphatase family YP_003697832.1 COGs: COG1507 conserved hypothetical protein; InterPro IPR007511; KEGG: jde:Jden_1921 protein of unknown function DUF501; PFAM: protein of unknown function DUF501; SPTR: D0WQ08 septum formation initiator family protein; PFAM: protein of unknown function (DUF501) YP_003697833.1 InterPro IPR007060; KEGG: bcv:Bcav_1019 septum formation initiator; PFAM: septum formation initiator; SPTR: D0WQ09 membrane protein; PFAM: septum formation initiator YP_003697834.1 COGs: COG0148 Enolase; InterPro IPR000941:IPR020811:IPR020810:IPR020809; KEGG: krh:KRH_17820 enolase; PFAM: Enolase-like; PRIAM: phosphopyruvate hydratase; SPTR: A7B9A0 Enolase; TIGRFAM: enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase YP_003697835.1 COGs: COG1197 transcription-repair coupling factor (superfamily II helicase); InterProIPR014021:IPR001650:IPR003711:IPR011545:IPR 005118:IPR004576:IPR014001; KEGG: xce:Xcel_2685 transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase; TRCF domain protein; SMART: DEAD-like helicase ; helicase; SPTR: D0WQ15 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_003697836.1 COGs: COG0193 peptidyl-tRNA hydrolase; InterPro IPR001328:IPR018171; KEGG: kra:Krad_1054 aminoacyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: A6W6V3 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase YP_003697837.1 COGs: COG1825 ribosomal protein L25 (general stress protein Ctc); InterProIPR020055:IPR020056:IPR020057:IPR001021:IPR 011035; KEGG: bfa:Bfae_13410 ribosomal protein L25, Ctc-form; PFAM: ribosomal protein L25-like; SPTR: D0WQ17 ribosomal protein L25, Ctc-form; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_003697838.1 COGs: COG0462 phosphoribosylpyrophosphate synthetase; InterPro IPR000836:IPR005946:IPR000842; KEGG: bcv:Bcav_0987 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: ribose-phosphate diphosphokinase; SPTR: D0WQ24 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_003697839.1 COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR001228:IPR011004; KEGG: jde:Jden_1943 UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PRIAM: glucosamine-1-phosphate N-acetyltransferase; SPTR: D0WQ25 UDP-N-acetylglucosamine diphosphorylase; PFAM: nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase YP_003697840.1 COGs: COG1309 transcriptional regulator; InterPro IPR001647:IPR012287:IPR009057; KEGG: bcv:Bcav_0984 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: C5C059 transcriptional regulator, TetR family; manually curated; PFAM: Bacterial regulatory proteins, tetR family YP_003697841.1 COGs: COG4152 ABC-type uncharacterized transporter ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: rop:ROP_50810 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: D0WQ28 ABC transporter ATP-binding protein; PFAM: ABC transporter YP_003697842.1 COGs: COG1668 ABC-type Na+ efflux pump permease component; KEGG: jde:Jden_1946 ABC transporter; SPTR: D0WQ29 membrane protein YP_003697843.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterPro IPR003439:IPR003593; KEGG: bln:Blon_1030 ABC transporter related; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: B7GQP6 ABC transporter; PFAM: ABC transporter YP_003697844.1 KEGG: ttr:Tter_2854 protein of unknown function DUF1648; SPTR: C2KPV3 uncharacterized protein YP_003697845.1 KEGG: Hypothetical protein CBG11497; SPTR: A8XCV2 C. briggsae CBR-DCT-17 protein (Fragment) YP_003697848.1 COGs: COG4123 O-methyltransferase; KEGG: bln:Blon_1029 methylase of polypeptide chain release factors-like protein; SPTR: B7GQP5 methylase of polypeptide chain release factors-like protein; PFAM: methyltransferase small domain YP_003697849.1 KEGG: bln:Blon_1670 hypothetical protein; SPTR: C2BRH1 uncharacterized protein YP_003697850.1 COGs: COG4722 Phage-related protein; KEGG: bce:BC2595 GP13 protein; SPTR: C2KNW0 Conserved bacteriophage protein; PFAM: Phage tail protein YP_003697851.1 KEGG: hypothetical protein; SPTR: B2B7M1 Predicted CDS Pa_2_11580 YP_003697853.1 KEGG: cce:Ccel_2826 hypothetical protein; SPTR: C8RU65 uncharacterized protein YP_003697854.1 KEGG: hmo:HM1_2967 hypothetical protein; SPTR: C2BV61 uncharacterized protein YP_003697855.1 InterPro IPR006490; KEGG: hmo:HM1_2966 phage major tail protein, phi13 family; SPTR: C2BV62 Phi13 family phage major tail protein; TIGRFAM: phage major tail protein, phi13 family; TIGRFAM: phage major tail protein, phi13 family YP_003697856.1 KEGG: cth:Cthe_1624 hypothetical protein; SPTR: C8RU62 uncharacterized protein YP_003697857.1 InterPro IPR010064; KEGG: hmo:HM1_2877 phage protein, hk97 GP10 family, SPTR: C8RU61 HK97 gp10 family phage protein; TIGRFAM: phage protein, HK97 gp10 family; PFAM: bacteriophage protein of unknown function (DUF646); TIGRFAM: phage protein, HK97 gp10 family YP_003697858.1 KEGG: tex:Teth514_1257 phage head-tail adaptor, SPTR: C8RU60 Phage head-tail adaptor; PFAM: Phage head-tail joining protein YP_003697859.1 InterPro IPR006450; KEGG: bca:BCE_0402 phage protein DNA packaging protein; SPTR: C2KNW9 Possible phage protein (Possible DNA packaging); TIGRFAM: uncharacterized phage protein ( DNA packaging); PFAM: Phage QLRG family, DNA packaging; TIGRFAM: uncharacterized phage protein ( DNA packaging) YP_003697860.1 COGs: COG4653 phage phi-C31 gp36 major capsid-like protein; InterPro IPR006444; KEGG: tex:Teth514_1254 HK97 family phage major capsid protein; PFAM: major capsid protein HK97; SPTR: C8RU58 HK97 family major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family YP_003697861.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907; KEGG: det:DET1086 ATP-dependent Clp protease proteolytic subunit ClpP, PFAM: peptidase S14 ClpP; SPTR: C8RU57 ATP-dependent Clp protease proteolytic subunit ClpP; PFAM: Clp protease YP_003697862.1 COGs: COG4695 Phage-related protein; InterPro IPR006944:IPR006427; KEGG: det:DET1087 HK97 family portal protein , PFAM: portal protein; SPTR: C2KNX2 HK97 family portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family YP_003697863.1 COGs: COG0640 transcriptional regulator; InterPro IPR001845:IPR011991; KEGG: nml:Namu_2556 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C8X7G0 ArsR family transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family YP_003697864.1 COGs: COG0701 permease; InterPro IPR005524; KEGG: ank:AnaeK_4014 permease; PFAM: permease; SPTR: B4UGD7 Permease; PFAM: Predicted permease YP_003697865.1 COGs: COG0394 protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: ckp:ckrop_1615 arsenate reductase; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; SPTR: C4LKI8 Arsenate reductase; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_003697866.1 InterPro IPR012335:IPR005243:IPR012336; KEGG: mva:Mvan_5315 redox-active disulfide protein 2; SPTR: C1RG08 Small redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2; TIGRFAM: small redox-active disulfide protein 2 YP_003697867.1 COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: ckr:CKR_2343 hypothetical protein; PFAM: terminase; SPTR: C8RU54 Prophage LambdaSa04, terminase, large subunit; PFAM: Phage terminase YP_003697868.1 COGs: COG0640 transcriptional regulator; InterPro IPR001845:IPR011991; KEGG: kse:Ksed_25700 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C8NVC6 ArsR family transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family YP_003697869.1 COGs: COG4300 permease cadmium resistance protein; InterPro IPR004676; KEGG: mlu:Mlut_20660 predicted permease, cadmium resistance protein; PFAM: cadmium resistance transporter; SPTR: C5C749 Predicted permease, cadmium resistance protein; PFAM: Cadmium resistance transporter YP_003697870.1 KEGG: cef:CE0267 hypothetical protein; SPTR: C0XQ96 uncharacterized protein YP_003697871.1 KEGG: cdi:DIP0820 hypothetical protein; SPTR: C0XQ94 uncharacterized protein YP_003697872.1 KEGG: kse:Ksed_13660 hypothetical protein; SPTR: C0XQ94 uncharacterized protein YP_003697873.1 KEGG: hne:HNE_2042 cytochrome P450 family protein; SPTR: C8RU53 ribosomal large subunit pseudouridine synthase D (RRNA-uridine isomerase D) (RRNA pseudouridylate synthase D) YP_003697874.1 KEGG: pac:PPA1584 hypothetical protein; SPTR: Q6A7E1 uncharacterized protein YP_003697875.1 KEGG: ckl:CKL_2647 hypothetical protein; SPTR: C8RU50 uncharacterized protein YP_003697876.1 KEGG: pac:PPA1585 phage-associated protein; SPTR: C8RU49 virulence-related protein YP_003697877.1 SPTR: C8RU48 Toxin-antitoxin system, toxin component YP_003697878.1 InterPro IPR002514; KEGG: kse:Ksed_22010 transposase; PFAM: transposase IS3/IS911 family protein; SPTR: C2BM30 ISMyma01 transposase; manually curated; PFAM: transposase YP_003697879.1 COGs: COG2801 transposase and inactivated derivatives; InterPro IPR001584:IPR012337; KEGG: kse:Ksed_22000 transposase; PFAM: Integrase catalytic region; SPTR: A7B9Y7 uncharacterized protein; PFAM: Integrase core domain YP_003697880.1 KEGG: fra:Francci3_3318 glycosyl transferase family protein; SPTR: Q2J7R7 glycosyl transferase, family 25 YP_003697881.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterProIPR003439:IPR017940:IPR003593:IPR011527:IPR 017871; KEGG: ele:Elen_3090 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C2BVY6 ABC superfamily ATP binding cassette transporter ABC/membrane protein; PFAM: ABC transporter transmembrane protein; ABC transporter YP_003697882.1 COGs: COG1132 ABC-type multidrug transporter ATPase and permeases; InterProIPR003439:IPR017940:IPR001140:IPR003593:IPR 011527:IPR017871; KEGG: ele:Elen_3091 ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane protein; SMART: AAA ATPase; SPTR: C2BVY7 ABC superfamily ATP binding cassette transporter ABC/membrane protein; PFAM: ABC transporter; ABC transporter transmembrane protein YP_003697883.1 COGs: COG1123 ATPase components of various ABC-type transporters contain duplicated ATPase; InterPro IPR003439:IPR003339:IPR003593:IPR017871; KEGG: lxx:Lxx21860 ABC transporter ATP-binding protein; PFAM: ABC transporter; cobalt transport protein; SMART: ATPase AAA; SPTR: C2BVY8 ABC superfamily ATP binding cassette transporter ABC protein; PFAM: ABC transporter; Cobalt transporter YP_003697884.1 InterPro IPR017195; KEGG: lxx:Lxx21850 ABC-type transporter permease; PFAM: ABC-type thiamin-related transport system, permease 1, predicted; SPTR: C2BVY9 ABC superfamily ATP binding cassette transporter permease; PFAM: ABC-type cobalt transporter, permease YP_003697885.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: cth:Cthe_1701 recombinase; PFAM: Resolvase domain; Recombinase; SPTR: C8RU75 Phage integrase family site-specific recombinase; PFAM: Recombinase; Resolvase, N terminal domain YP_003697886.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: spa:M6_Spy1124 site-specific recombinase; PFAM: Resolvase domain; Recombinase; SPTR: C8RU76 Resolvase family prophage LambdaSa04, site-specific recombinase; PFAM: Recombinase; Resolvase, N terminal domain YP_003697887.1 KEGG: cai:Caci_5930 hypothetical protein; SPTR: C2GDL7 uncharacterized protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003697888.1 COGs: COG0286 type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: dvl:Dvul_0488 N-6 DNA methylase; PFAM: N-6 DNA methylase; SPTR: C8RRG5 type I restriction-modification system, M subunit N-6 adenine-specific DNA methylase; PFAM: N-6 DNA methylase; HsdM N-terminal domain YP_003697889.1 InterPro IPR006442; KEGG: amt:Amet_4059 hypothetical protein; SPTR: C2GDV9 uncharacterized protein; TIGRFAM: prevent-host-death family protein; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein YP_003697890.1 KEGG: dda:Dd703_3047 site-specific DNA-methyltransferase (adenine-specific); SPTR: C6CCH7 Site-specific DNA-methyltransferase (adenine-specific) YP_003697891.1 InterPro IPR000835:IPR011991; KEGG: bcv:Bcav_0980 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YV56 transcriptional regulator, MarR family; PFAM: MarR family YP_003697892.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR017871:IPR003593:IPR003439; KEGG: mlu:Mlut_05410 ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: C0W7V6 ABC superfamily ATP binding cassette transporter ABC protein; PFAM: ABC transporter YP_003697893.1 COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; InterProIPR020568:IPR006204:IPR013750:IPR004424:IPR 014721; KEGG: jde:Jden_1952 dimethyladenosine transferase; PFAM: GHMP kinase; GHMP kinase domain protein; SPTR: D0WQ34 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_003697894.1 COGs: COG2190 phosphotransferase system IIA components; InterPro IPR001127:IPR011055; KEGG: car:cauri_0239 PTS system, N-acetylglucosamine-specific IIABC component; PFAM: sugar-specific permease EIIA 1 domain; SPTR: C2GFH2 Pts system, N-acetylglucosamine-specific IIABC component; TIGRFAM: PTS system, glucose subfamily, IIsubunit alpha; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; TIGRFAM: PTS system, glucose subfamily, IIA component YP_003697895.1 COGs: COG1263 phosphotransferase system IIC components glucose/maltose/N-acetylglucosamine-specific; InterProIPR001996:IPR013013:IPR003352:IPR018113:IPR 010974:IPR011535; KEGG: car:cauri_0239 PTS system, N-acetylglucosamine-specific IIABC component; PFAM: phosphotransferase system EIIC; phosphotransferase system EIIB/cysteine, phosphorylation site; SPTR: C2GFH2 Pts system, N-acetylglucosamine-specific IIABC component; TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system, EIIC; phosphotransferase system, EIIB; TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC component; PTS system, glucose-like IIB component YP_003697896.1 COGs: COG3711 transcriptional antiterminator; InterPro IPR011608:IPR004341; KEGG: dda:Dd703_1406 transcriptional antiterminator, BglG; PFAM: PRD domain protein; CAT RNA-binding domain protein; SPTR: C2GFH3 transcriptional antiterminator; PFAM: CAT RNA binding domain; PRD domain YP_003697897.1 COGs: COG0030 dimethyladenosine transferase (rRNA methylation); InterPro IPR020596:IPR020598:IPR001737:IPR011530; KEGG: bcv:Bcav_0975 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase-like; SPTR: C0W7V3 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_003697898.1 COGs: COG3583 conserved hypothetical protein; InterPro IPR011098:IPR007137; KEGG: bcv:Bcav_0973 G5 domain protein; PFAM: G5 domain protein; protein of unknown function DUF348; SPTR: C5C048 G5 domain protein; PFAM: Domain of unknown function (DUF348); G5 domain YP_003697899.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR001130:IPR012278; KEGG: bcv:Bcav_0972 hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; SPTR: D0WQ46 deoxyribonuclease; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_003697900.1 COGs: COG0143 Methionyl-tRNA synthetase; InterProIPR009080:IPR014758:IPR015413:IPR002304:IPR 014729; KEGG: bfa:Bfae_17560 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); PRIAM: methionine--tRNA ligase; SPTR: D0WQ47 methionine--tRNA ligase; TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetases class I (M); TIGRFAM: methionyl-tRNA synthetase YP_003697901.1 COGs: COG1335 amidase related to nicotinamidase; InterPro IPR000868; KEGG: jde:Jden_1959 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: D0WQ48 Pyrazinamidase/nicotinamidase; PFAM: Isochorismatase family YP_003697902.1 COGs: COG5646 conserved hypothetical protein; InterPro IPR014922; KEGG: cdi:DIP0112 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: Q6NKC1 uncharacterized protein; PFAM: Domain of unknown function (DU1801) YP_003697903.1 COGs: COG2409 drug exporter of the RND superfamily; InterPro IPR000731:IPR004869; KEGG: ach:Achl_3628 MmpL domain protein; PFAM: MMPL domain protein; SPTR: C1RG49 Predicted RND superfamily drug exporter; PFAM: MMPL family YP_003697904.1 COGs: COG0313 methyltransferase; InterPro IPR018063:IPR000878:IPR008189:IPR014777; KEGG: bcv:Bcav_0951 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: A7BEV4 uncharacterized protein; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases; TIGRFAM: conserved hypothetical protein TIGR00096 YP_003697905.1 COGs: COG3824 conserved hypothetical protein; InterPro IPR010428; KEGG: lxx:Lxx14190 hypothetical protein; PFAM: protein of unknown function DUF1025; SPTR: Q6AEG1 uncharacterized protein; PFAM: Domain of unknown function (DUF1025) YP_003697906.1 COGs: COG1416 conserved hypothetical protein; InterPro IPR014865; KEGG: chy:CHY_1266 hypothetical protein; PFAM: Domain of unknown function DUF1791; SPTR: Q3ACN4 uncharacterized protein; PFAM: DsrE/DsrF-like family YP_003697907.1 COGs: COG1131 ABC-type multidrug transporter ATPase component; InterPro IPR003593:IPR003439; KEGG: jde:Jden_0115 ABC transporter related; PFAM: ABC transporter; SMART: ATPase AAA; SPTR: C7R5B2 ABC transporter related; PFAM: ABC transporter YP_003697908.1 KEGG: xce:Xcel_1905 ABC transporter; SPTR: D1BT82 ABC transporter YP_003697909.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: kse:Ksed_01000 signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SPTR: C2BTB8 Two component system histidine kinase; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003697910.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR001789:IPR000792:IPR011006:IPR016032:IPR 011991; KEGG: rer:RER_47120 NarL family two-component response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: C0ZN12 NarL family two-component response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003697911.1 COGs: COG2813 16S RNA G1207 methylase RsmC; InterPro IPR002052:IPR007848; KEGG: bfa:Bfae_23400 16S RNA G1207 methylase RsmC; PFAM: methyltransferase small; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: C8NTY6 methyltransferase small domain protein; PFAM: methyltransferase small domain YP_003697912.1 KEGG: reh:H16_A3557 hypothetical protein; SPTR: B8KDB1 uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2314) YP_003697913.1 KEGG: rop:ROP_67890 hydrolase; SPTR: C0VYQ3 Possible acyl-CoA thioester hydrolase YP_003697914.1 KEGG: bcv:Bcav_0907 hypothetical protein; SPTR: D0WJQ9 uncharacterized protein (Fragment) YP_003697915.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR005110:IPR001453:IPR005111:IPR020817; KEGG: bcv:Bcav_0905 molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV; SPTR: A7B9R2 uncharacterized protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_003697916.1 COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: jde:Jden_1969 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: D0WJR1 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase YP_003697917.1 InterPro IPR013974; KEGG: bcv:Bcav_0901 SAF domain protein; PFAM: SAF domain protein; SPTR: D0WJR4 Flp pilus assembly protein CpaB family protein; PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB YP_003697918.1 COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR019823:IPR001185; KEGG: mlu:Mlut_16810 MscL large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; SPTR: C5CC27 MscL large conductance mechanosensitive channel protein; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein YP_003697919.1 KEGG: nfa:nfa19070 hypothetical protein; SPTR: D0WJR6 uncharacterized protein YP_003697920.1 KEGG: bcv:Bcav_0899 DNA helicase; SPTR: D0WJR7 uncharacterized protein YP_003697921.1 COGs: COG1054 sulfurtransferase; InterPro IPR001763; KEGG: cjk:jk0240 hypothetical protein; PFAM: rhodanese; SMART: rhodanese; SPTR: C0W1I1 Possible sulfurtransferase; PFAM: Rhodanese-like domain YP_003697922.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015:IPR006016:IPR014729; KEGG: bcv:Bcav_0884 UspA domain protein; PFAM: UspA domain protein; SPTR: D0WJS1 universal stress protein; PFAM: Universal stress protein family YP_003697923.1 COGs: COG0791 cell wall-associated hydrolase (invasion-associated protein); InterPro IPR006162:IPR000064; KEGG: bcv:Bcav_0883 NLP/P60 protein; PFAM: NLP/P60 protein; SPTR: C0W426 NLP/P60 family protein; PFAM: NlpC/P60 family YP_003697924.1 COGs: COG1321 Mn-dependent transcriptional regulator; InterPro IPR001367:IPR008988:IPR007167:IPR011991; KEGG: jde:Jden_1989 iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; SPTR: C7R0G3 Iron (metal) dependent repressor, DtxR family; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain YP_003697925.1 COGs: COG2252 Permease; InterPro IPR006043; KEGG: kra:Krad_1382 xanthine/uracil/vitamin C permease; PFAM: xanthine/uracil/vitamin C permease; SPTR: D0WJT1 xanthine/uracil permease family protein; PFAM: Permease family YP_003697926.1 COGs: COG1482 phosphomannose isomerase; InterProIPR018050:IPR011051:IPR016305:IPR001250:IPR 014710; KEGG: bcv:Bcav_0860 mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; PRIAM: mannose-6-phosphate isomerase; SPTR: D0WJT2 mannose-6-phosphate isomerase, class I; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I YP_003697927.1 KEGG: kra:Krad_3581 hypothetical protein; SPTR: D0WJT3 uncharacterized protein; PFAM: protein of unknown function (DUF3027) YP_003697928.1 COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR016027:IPR002059:IPR012340; KEGG: bcv:Bcav_0848 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: D0WJT4 Cold-shock domain protein; PFAM: 'Cold-shock' DNA-binding domain YP_003697929.1 InterPro IPR001990; KEGG: xce:Xcel_2933 hypothetical protein; PFAM: Chromogranin/secretogranin; SPTR: D0WJT5 secreted protein YP_003697930.1 COGs: COG1842 Phage shock protein A (IM30) suppresses sigma54-dependent transcription; InterPro IPR007157; KEGG: xce:Xcel_2934 phage shock protein A, PspA; PFAM: PspA/IM30 family protein; SPTR: D0WJT6 PspA/IM30 family protein; PFAM: PspA/IM30 family YP_003697931.1 KEGG: jde:Jden_2050 hypothetical protein; SPTR: C0W439 uncharacterized protein; PFAM: protein of unknown function DUF88 YP_003697932.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006:IPR001867; KEGG: xce:Xcel_2937 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; SPTR: D0WJT7 DNA-binding response regulator PhoP; PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal YP_003697933.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR009082:IPR 005467:IPR004358; KEGG: kra:Krad_3621 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: D0WJT8 PhoR protein; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003697934.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: pac:PPA2237 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: D0WJT9 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_003697935.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR016040:IPR002347:IPR002198; KEGG: bfa:Bfae_27130 short-chain dehydrogenase of unknown substrate specificity; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: D0WJU0 oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase YP_003697936.1 COGs: COG4339 conserved hypothetical protein; KEGG: xce:Xcel_2939 hypothetical protein; SPTR: D0WJU1 uncharacterized protein YP_003697937.1 COGs: COG0459 chaperonin GroEL (HSP60 family); InterPro IPR018370:IPR002423:IPR001844; KEGG: bcv:Bcav_0821 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: C0W445 60 kDa chaperonin; TIGRFAM: chaperonin GroEL; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_003697938.1 KEGG: bcv:Bcav_0815 hypothetical protein; SPTR: D0WJU8 uncharacterized protein YP_003697939.1 KEGG: sgr:SGR_4058 hypothetical protein; SPTR: B1VSD3 uncharacterized protein; PFAM: protein of unknown function (DUF3263) YP_003697940.1 COGs: COG0692 uracil DNA glycosylase; InterPro IPR018085:IPR005122:IPR002043; KEGG: lxx:Lxx18890 uracil-DNA glycosylase; PFAM: uracil-DNA glycosylase superfamily; SPTR: D0WJV1 uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase YP_003697941.1 KEGG: jde:Jden_1612 LPXTG-motif cell wall anchor domain protein; SPTR: C7R5I7 LPXTG-motif cell wall anchor domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003697942.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterProIPR001917:IPR015424:IPR004839:IPR011282:IPR 015421; KEGG: kse:Ksed_10060 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II; PRIAM: glycine C-acetyltransferase; SPTR: C7NG51 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase YP_003697943.1 COGs: COG1063 threonine dehydrogenase and related Zn-dependent dehydrogenase; InterProIPR002328:IPR011032:IPR016040:IPR013154:IPR 013149; KEGG: kse:Ksed_10170 L-threonine 3-dehydrogenase; PFAM: alcohol dehydrogenase GroES; alcohol dehydrogenase zinc-binding domain protein; SPTR: C0W4J4 L-threonine 3-dehydrogenase; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: L-threonine 3-dehydrogenase YP_003697944.1 COGs: COG0168 Trk-type K+ transporters membrane components; InterPro IPR003445; KEGG: krh:KRH_15110 cation transporter; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: C2BVK7 Possible H(+)-transporting two-sector ATPase; PFAM: Cation transporter; TIGRFAM: potassium uptake protein, TrkH family YP_003697945.1 COGs: COG0569 K+ transporters NAD-binding component; InterPro IPR016040:IPR003148:IPR006037; KEGG: sro:Sros_6144 TrkA-N; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: D0YQI4 TrkA-N; PFAM: TrkA-N domain; TrkA-C domain YP_003697946.1 COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: jde:Jden_1694 amino acid carrier protein; PFAM: sodium:alanine symporter; SPTR: C0W2K9 AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter; TIGRFAM: amino acid carrier protein; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein YP_003697947.1 InterPro IPR012336:IPR001853:IPR012335; KEGG: xce:Xcel_2947 DsbA oxidoreductase; PFAM: DSBA oxidoreductase; SPTR: D0WJV3 uncharacterized protein; PFAM: DSBA-like thioredoxin domain YP_003697948.1 COGs: COG0515 serine/threonine protein kinase; InterProIPR017441:IPR008271:IPR020635:IPR002290:IPR 011009:IPR000719:IPR017442; KEGG: bcv:Bcav_0797 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: D0WJV4 tyrosine protein kinase:serine/threonine protein kinase; PFAM: protein kinase domain YP_003697949.1 COGs: COG3839 ABC-type sugar transporters ATPase components; InterPro IPR017871:IPR003593:IPR008995:IPR003439; KEGG: xce:Xcel_2950 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C0W453 glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter YP_003697950.1 KEGG: bcv:Bcav_0782 hypothetical protein; SPTR: C0VYH1 uncharacterized protein; PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family YP_003697951.1 COGs: COG0353 recombinational DNA repair protein (RecF pathway); InterPro IPR006154:IPR000093:IPR015967:IPR006171; KEGG: xce:Xcel_0272 recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; SPTR: D0WJW2 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR YP_003697952.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003593:IPR008921:IPR003959:IPR012763; KEGG: rsa:RSal33209_3356 DNA polymerase III subunits gamma/tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA; SPTR: A7BAA1 uncharacterized protein; TIGRFAM: DNA polymerase III subunits gamma/tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma/tau domain III; TIGRFAM: DNA polymerase III, subunits gamma and tau YP_003697953.1 InterPro IPR016196:IPR011701; KEGG: bcv:Bcav_0875 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C2KTI5 Major facilitator transporter; PFAM: Bacterial protein of unknown function (DUF894) YP_003697954.1 COGs: COG2801 transposase and inactivated derivatives; InterPro IPR012337:IPR001584; KEGG: kse:Ksed_22000 transposase; PFAM: Integrase catalytic region; SPTR: A7B9Y7 uncharacterized protein; PFAM: Integrase core domain YP_003697955.1 InterPro IPR002514; KEGG: kse:Ksed_22010 transposase; PFAM: transposase IS3/IS911 family protein; SPTR: C2BM30 ISMyma01 transposase; PFAM: transposase YP_003697956.1 KEGG: KLTH0G04994p; K10842 CDK-activating kinase assembly factor MAT1; SPTR: C5DM07 KLTH0G04994p YP_003697957.1 KEGG: eca:ECA1108 exonuclease; SPTR: Q6D867 exonuclease YP_003697958.1 KEGG: bcv:Bcav_0533 hypothetical protein; SPTR: D0WJX6 cell envelope-related transcriptional attenuator YP_003697959.1 COGs: COG2233 xanthine/uracil permease; InterPro IPR006043:IPR006042; KEGG: bcv:Bcav_0274 uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; SPTR: C2BTD4 NCS2 family nucleobase:cation symporter-2; TIGRFAM: uracil-xanthine permease; PFAM: Permease family; TIGRFAM: uracil-xanthine permease YP_003697960.1 COGs: COG4405 conserved hypothetical protein; InterPro IPR015947:IPR007374; KEGG: lmc:Lm4b_02824 hypothetical protein; PFAM: protein of unknown function DUF437; SPTR: D0WJY0 uncharacterized protein; PFAM: ASCH domain YP_003697961.1 KEGG: rsa:RSal33209_2038 proteasome component; SPTR: D0WJY1 50S ribosomal protein L12P YP_003697962.1 COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537:IPR004441; KEGG: xce:Xcel_2952 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: D0WJY2 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3 YP_003697963.1 COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR009080:IPR015803:IPR015273:IPR002308:IPR 014729; KEGG: bcv:Bcav_0780 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: D0WJY3 Cysteine--tRNA ligase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase YP_003697964.1 COGs: COG2270 Permease of the major facilitator superfamily; InterPro IPR016196:IPR011701; KEGG: pac:PPA1044 major facilitator superfamily permease; PFAM: major facilitator superfamily MFS_1; SPTR: D0WJY4 Major facilitator family transporter; PFAM: Vacuole effluxer Atg22 like YP_003697965.1 COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; InterPro IPR003526; KEGG: fre:Franean1_0364 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; SPTR: D0WJY6 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_003697966.1 COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR018294:IPR001228; KEGG: art:Arth_0727 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: A0JSV5 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_003697967.1 COGs: COG1329 transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: ace:Acel_0078 CarD family transcriptional regulator; PFAM: transcription factor CarD; SPTR: D0WJY8 CarD family transcripitonal regulator; PFAM: CarD-like/TRCF domain YP_003697968.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006:IPR016032:IPR001867; KEGG: mlu:Mlut_03750 PhoP-like protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C0W5A5 Response regulator; PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal YP_003697969.1 COGs: COG5002 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR009082:IPR005467:IPR 004358; KEGG: bcv:Bcav_0770 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C5BYS3 Sensor protein; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003697970.1 COGs: COG0704 phosphate uptake regulator; InterPro IPR008170; KEGG: bcv:Bcav_0769 phosphate uptake regulator, PhoU; PFAM: PhoU family protein; SPTR: C0W5A3 phosphate uptake regulator; TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transporter regulatory protein PhoU YP_003697971.1 COGs: COG0588 phosphoglycerate mutase 1; InterPro IPR001345:IPR013078:IPR005952; KEGG: xce:Xcel_2972 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SPTR: C0W5A2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase; PFAM: phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1 YP_003697972.1 COGs: COG3304 membrane protein; InterPro IPR005185; KEGG: cef:CE0923 hypothetical protein; PFAM: protein of unknown function DUF307; SPTR: Q8FR43 uncharacterized protein; manually curated; PFAM: Domain of unknown function (DUF307) YP_003697973.1 KEGG: xce:Xcel_1971 hypothetical protein; SPTR: C2CQM5 uncharacterized protein YP_003697974.1 COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR001763:IPR016156:IPR013027:IPR004099; KEGG: cdi:DIP1748 oxidase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: rhodanese; SPTR: C2CQM4 CoA-disulfide reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Rhodanese-like domain YP_003697975.1 COGs: COG1937 conserved hypothetical protein; InterPro IPR003735; KEGG: cdi:DIP1749 hypothetical protein; PFAM: protein of unknown function DUF156; SPTR: Q6NFY6 uncharacterized protein; PFAM: Uncharacterised BCR, COG1937 YP_003697976.1 COGs: COG1457 Purine-cytosine permease and related protein; InterPro IPR001248; KEGG: bfa:Bfae_30600 purine-cytosine permease-like transporter; PFAM: permease for cytosine/purines uracil thiamine allantoin; SPTR: C7MAT4 Purine-cytosine permease-like transporter; PFAM: Permease for cytosine/purines, uracil, thiamine, allantoin YP_003697977.1 COGs: COG2233 xanthine/uracil permease; InterPro IPR006042:IPR006043:IPR018020:IPR017588; KEGG: cdi:DIP1943 xanthine/uracil permeases family protein; PFAM: xanthine/uracil/vitamin C permease; Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; SPTR: Q6NFE8 xanthine/uracil permeases family protein; TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: OHCU decarboxylase; Permease family; TIGRFAM: uracil-xanthine permease; xanthine permease YP_003697978.1 KEGG: msl:Msil_2925 NADH dehydrogenase subunit H; SPTR: Q94Z18 NADH-ubiquinone oxidoreductase chain 1 YP_003697979.1 InterPro IPR001845:IPR011991; KEGG: nml:Namu_2556 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C8X7G0 transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family YP_003697980.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011010:IPR010998:IPR002104:IPR013762; KEGG: mpa:MAP2752 hypothetical protein; PFAM: integrase family protein; SPTR: B5U3A1 Gp33; PFAM: Phage integrase family YP_003697981.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: ach:Achl_4190 cobyrinic acid ac-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; SPTR: C2BRF7 chromosome partitioning protein transcriptional regulator; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_003697982.1 KEGG: pis:Pisl_0752 small GTP-binding protein; SPTR: C2BRF8 uncharacterized protein YP_003697983.1 KEGG: efa:EF1057 Mn2+/Fe2+ transporter; SPTR: C0CYA1 uncharacterized protein YP_003697984.1 KEGG: jde:Jden_1429 hypothetical protein; SPTR: C7R4M4 uncharacterized protein YP_003697985.1 KEGG: ate:Athe_1507 phenylacetate--CoA ligase; SPTR: C2BRG5 uncharacterized protein YP_003697986.1 InterPro IPR008687; KEGG: lxx:Lxx07715 hypothetical protein; PFAM: mobilisation protein; SPTR: Q6AG08 uncharacterized protein; PFAM: Bacterial mobilisation protein (MobC) YP_003697987.1 InterPro IPR005094; KEGG: lxx:Lxx07700 mobilization protein; PFAM: Relaxase/mobilization nuclease family protein; SPTR: C2BRG6 Possible mobilization protein; PFAM: Relaxase/Mobilisation nuclease domain YP_003697988.1 KEGG: efa:EF2329 hypothetical protein; SPTR: C2BRG7 uncharacterized protein YP_003697989.1 KEGG: lhk:LHK_01554 hypothetical protein; SPTR: A7B3X1 uncharacterized protein YP_003697990.1 KEGG: hsl:OE4030F hypothetical protein; SPTR: C0D047 Sensor protein (Fragment) YP_003697991.1 KEGG: bpu:BPUM_2986 LacI family transcriptional regulator; SPTR: B6Q5I9 Pogo transposable element YP_003697992.1 COGs: COG3505 type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: apr:Apre_1805 TraG family protein; PFAM: TRAG family protein; SPTR: C2BRH0 TraG/TraD family protein; PFAM: TraG/TraD family YP_003697993.1 InterPro IPR019284; KEGG: ckr:CKR_2857 hypothetical protein; PFAM: protein of unknown function DUF2335, membrane; SPTR: B9E5Y3 uncharacterized protein; PFAM: Predicted membrane protein (DUF2335) YP_003697994.1 KEGG: bln:Blon_1670 hypothetical protein; SPTR: C2BRH1 uncharacterized protein YP_003697995.1 COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR007921:IPR008258; KEGG: sgr:SGR_3923 secreted transglycosylase; PFAM: lytic transglycosylase catalytic; CHAP domain containing protein; SPTR: C0BU72 uncharacterized protein; PFAM: transglycosylase SLT domain; CHAP domain YP_003697996.1 COGs: COG3451 type IV secretory pathway VirB4 protein; KEGG: lxx:Lxx07680 transfer complex protein; SPTR: C2BRH4 transfer complex protein; PFAM: Domain of unknown function DUF87 YP_003697997.1 KEGG: bln:Blon_0504 hypothetical protein; SPTR: C2BRH5 uncharacterized protein YP_003697998.1 KEGG: bln:Blon_1669 hypothetical protein; SPTR: C2BRH6 uncharacterized protein YP_003697999.1 KEGG: GA26006 gene product from transcript GA26006-RA; SPTR: B0PD48 uncharacterized protein YP_003698000.1 KEGG: cai:Caci_8591 hypothetical protein; SPTR: C2BRI0 uncharacterized protein YP_003698001.1 KEGG: pfu:PF2023 DNA invertase; SPTR: Q8TZH1 DNA invertase YP_003698002.1 InterPro IPR000073:IPR013595; KEGG: xce:Xcel_0356 TAP domain protein; PFAM: TAP domain protein; alpha/beta hydrolase fold; SPTR: D0WK12 uncharacterized protein; PFAM: TAP-like protein YP_003698003.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: xce:Xcel_0355 DNA polymerase III subunit delta'; SPTR: D1BVC3 DNA polymerase III, delta prime subunit; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III delta' subunit YP_003698004.1 COGs: COG0125 Thymidylate kinase; InterPro IPR018095:IPR000062:IPR018094; KEGG: jde:Jden_2194 thymidylate kinase; PFAM: thymidylate kinase; PRIAM: dTMP kinase; SPTR: D0WK14 dTMP kinase; TIGRFAM: thymidylate kinase; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase YP_003698005.1 COGs: COG0550 Topoisomerase IA; InterProIPR000380:IPR006154:IPR003601:IPR003602:IPR 006171:IPR013497:IPR005733:IPR013824:IPR013826; KEGG: bcv:Bcav_0657 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; SPTR: D0WK15 DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial YP_003698006.1 COGs: COG2890 methylase of polypeptide chain release factors; InterPro IPR002052:IPR007848; KEGG: kse:Ksed_25140 methyltransferase family protein; PFAM: methyltransferase small; SPTR: C7NG68 methyltransferase family protein; PFAM: methyltransferase small domain YP_003698007.1 COGs: COG1180 pyruvate-formate lyase-activating enzyme; InterPro IPR007197:IPR012840; KEGG: xce:Xcel_0151 anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM domain protein; SPTR: C0W488 Anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein YP_003698008.1 COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR012833; KEGG: cdi:DIP0465 anaerobic ribonucleoside triphosphate reductase; SPTR: C0W489 Anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase YP_003698009.1 COGs: COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; InterProIPR014001:IPR001650:IPR014021:IPR011545:IPR 018973; KEGG: bcv:Bcav_0625 DEAD/DEAH box helicase; PFAM: DEAD/DEAH box helicase; helicase; protein of unknown function DUF1998; SMART: DEAD-like helicase ; helicase; SPTR: D0WK34 ATP-dependent RNA helicase, DEAD/DEAH box family; PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase YP_003698010.1 InterPro IPR019793; KEGG: rha:RHA1_ro04345 hypothetical protein; SPTR: Q0S8K1 uncharacterized protein YP_003698011.1 KEGG: rop:ROP_42540 hypothetical membrane protein; SPTR: C1B9Z8 Hypothetical membrane protein YP_003698012.1 KEGG: bad:BAD_0132 hypothetical protein; SPTR: D0WK38 uncharacterized protein YP_003698014.1 KEGG: similar to arylsulfatase b; SPTR: Q0UH41 uncharacterized protein YP_003698015.1 KEGG: bcv:Bcav_0621 type II secretion system protein; SPTR: D0WK41 integral membrane protein YP_003698016.1 KEGG: bcv:Bcav_0620 hypothetical protein; SPTR: D0WK42 type II secretion system protein YP_003698017.1 COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482; KEGG: bcv:Bcav_0619 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: D0WK43 pilus assembly protein CpaF; PFAM: type II/IV secretion system protein YP_003698018.1 InterPro IPR019775; KEGG: bcv:Bcav_0618 hypothetical protein; SPTR: D0WK44 septum site determining protein YP_003698019.1 KEGG: bcv:Bcav_0615 hypothetical protein; SPTR: D0WK52 uncharacterized protein YP_003698020.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639:IPR000073; KEGG: bcv:Bcav_0610 alpha/beta hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: D0WK53 alpha/beta hydrolase family protein; PFAM: alpha/beta hydrolase fold YP_003698021.1 KEGG: bfa:Bfae_23020 hypothetical protein; SPTR: D0YUD4 uncharacterized protein YP_003698022.1 COGs: COG0177 endoIII-related endonuclease; InterProIPR004035:IPR004036:IPR003265:IPR003651:IPR 011257:IPR005759; KEGG: sgr:SGR_3332 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: C9NH41 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; Iron-sulfur binding domain of endonuclease III; Helix-hairpin-helix motif; TIGRFAM: endonuclease III YP_003698023.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR000595:IPR001808:IPR018490:IPR012318:IPR 014710:IPR011991; KEGG: sgr:SGR_3333 Crp/Fnr family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: D0WK55 Crp/Fnr family transcriptional regulator; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_003698024.1 KEGG: hypothetical protein; SPTR: C4G126 uncharacterized protein YP_003698025.1 COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR013813:IPR006175; KEGG: mlu:Mlut_18300 translation initiation inhibitor, YjgF family; PFAM: endoribonuclease L-PSP; SPTR: C5CCW1 translation initiation inhibitor, yjgF family; PFAM: endoribonuclease L-PSP YP_003698026.1 KEGG: sco:SCO3576 hypothetical protein; SPTR: D0WK57 uncharacterized protein YP_003698027.1 InterPro IPR003482; KEGG: sro:Sros_0461 transcription factor WhiB; PFAM: transcription factor WhiB; SPTR: C0W568 transcription factor WhiB; PFAM: transcription factor WhiB YP_003698028.1 COGs: COG0744 membrane carboxypeptidase (penicillin-binding protein); InterPro IPR012338:IPR005543:IPR001264:IPR001460; KEGG: bcv:Bcav_0604 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PASTA domain containing protein; PRIAM: peptidoglycan glycosyltransferase; SPTR: D0WK60 Penicillin-binding protein; PFAM: Penicillin binding protein transpeptidase domain; transglycosylase; PASTA domain YP_003698029.1 COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: bcv:Bcav_0603 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: D0WK61 Ser/Thr protein phosphatase family protein; PFAM: Calcineurin-like phosphoesterase YP_003698030.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002139:IPR011611:IPR011877; KEGG: pac:PPA1211 ribokinase family sugar kinase; PFAM: PfkB domain protein; SPTR: C8NDA0 ribokinase; TIGRFAM: ribokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase YP_003698031.1 InterPro IPR003006; KEGG: pac:PPA1212 hypothetical protein; SPTR: C0W0W1 DeoX family protein YP_003698032.1 COGs: COG0738 Fucose permease; InterPro IPR016196:IPR011701:IPR005275; KEGG: pac:PPA1213 L-fucose permease; PFAM: major facilitator superfamily MFS_1; SPTR: D0YUD1 L-fucose:H+ symporter permease; TIGRFAM: L-fucose transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease YP_003698033.1 KEGG: pth:PTH_2246 abortive infection bacteriophage resistance protein; SPTR: Q0EXJ2 Abortive infection bacteriophage resistance protein; PFAM: Abi-like protein YP_003698034.1 COGs: COG2390 transcriptional regulator contains sigma factor-related N-terminal domain; InterPro IPR009057:IPR007324; KEGG: krh:KRH_18930 deoxyribonucleoside regulator; PFAM: sugar-binding domain protein; SPTR: C0W0V8 DeoR family transcriptional regulator; PFAM: sugar-binding domain YP_003698035.1 InterPro IPR013519; KEGG: hau:Haur_4585 FG-GAP repeat-containing protein; SPTR: D0YPS4 FG-GAP repeat protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003698036.1 InterPro IPR013519; KEGG: ITGA1; integrin, alpha 1; K06480 integrin alpha 1; SMART: Integrin alpha beta-propellor repeat protein; SPTR: C2KTJ5 FG-GAP repeat domain protein YP_003698037.1 InterPro IPR008969:IPR008454:IPR019931; KEGG: dsh:Dshi_3592 hypothetical protein; PFAM: Cna B domain protein; SPTR: A8LQ85 uncharacterized protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna protein B-type domain; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003698038.1 KEGG: rmu:RMDY18_05770 predicted membrane protein; SPTR: C2BVD4 transglycosylase associated protein; PFAM: transglycosylase associated protein YP_003698039.1 COGs: COG0474 Cation transport ATPase; InterProIPR018303:IPR001757:IPR000695:IPR008250:IPR 005834; KEGG: mab:MAB_0962 cation-transporting ATPase E; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; SPTR: D0WK77 Cation-transporting ATPase, E1-E2 family; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003698040.1 COGs: COG4868 conserved hypothetical protein; InterPro IPR014999; KEGG: cur:cur_0538 hypothetical protein; PFAM: Domain of unknown function DUF1846; SPTR: B1VFF9 UPF0371 protein cu0538; PFAM: Domain of unknown function (DUF1846) YP_003698041.1 COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: cms:CMS_1576 peptide deformylase; PFAM: formylmethionine deformylase; PRIAM: peptide deformylase; SPTR: B0RBE6 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: polypeptide deformylase; TIGRFAM: peptide deformylase YP_003698042.1 KEGG: gbr:Gbro_1394 hypothetical protein; SPTR: C2KMY9 uncharacterized protein YP_003698043.1 KEGG: cac:CAC1402 hypothetical protein; SPTR: C2BTX7 uncharacterized protein; PFAM: acyltransferase family YP_003698044.1 KEGG: ote:Oter_0532 hypothetical protein; SPTR: B1ZSG5 uncharacterized protein YP_003698045.1 COGs: COG0590 cytosine/adenosine deaminase; InterPro IPR016192:IPR016193:IPR002125; KEGG: bcv:Bcav_0518 CMP/dCMP deaminase zinc-binding; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: A7BBB6 uncharacterized protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_003698046.1 COGs: COG0035 uracil phosphoribosyltransferase; InterPro IPR000836:IPR005765; KEGG: bcv:Bcav_0515 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: D1BKD7 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase YP_003698047.1 COGs: COG2267 lysophospholipase; InterPro IPR000073; KEGG: bcv:Bcav_0467 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: D0WK88 Hydrolase, alpha/beta fold family domain protein; PFAM: alpha/beta hydrolase fold YP_003698048.1 KEGG: bcv:Bcav_0374 hypothetical protein; SPTR: D0WK91 uncharacterized protein YP_003698049.1 COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bcv:Bcav_0375 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: D0WK92 glycosyltransferase, group 2 family; PFAM: glycosyl transferase family 2 YP_003698050.1 InterPro IPR000792:IPR016032:IPR011991; KEGG: sco:SCO1353 transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: Q7WWP4 transcriptional regulator; PFAM: Bacterial regulatory proteins, luxR family YP_003698051.1 KEGG: bcv:Bcav_0376 hypothetical protein; SPTR: D0WK97 uncharacterized protein YP_003698052.1 COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: bcv:Bcav_0378 diacylglycerol kinase; PFAM: diacylglycerol kinase catalytic region; SPTR: D0WKA0 diacylglycerol kinase catalytic domain protein; PFAM: diacylglycerol kinase catalytic domain YP_003698053.1 COGs: COG0172 Seryl-tRNA synthetase; InterProIPR010978:IPR006195:IPR018156:IPR015866:IPR 002314:IPR002317; KEGG: xce:Xcel_3242 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; PRIAM: serine--tRNA ligase; SPTR: D0WKA1 serine--tRNA ligase; TIGRFAM: seryl-tRNA synthetase; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase YP_003698054.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR000150:IPR013200:IPR006379; KEGG: kra:Krad_0250 HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; SPTR: D0WKA2 Hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_003698055.1 KEGG: bcv:Bcav_0376 hypothetical protein; SPTR: C0VY58 uncharacterized protein YP_003698056.1 COGs: COG2128 conserved hypothetical protein; InterPro IPR003779:IPR004675; KEGG: cef:CE2276 hypothetical protein; PFAM: carboxymuconolactone decarboxylase; SPTR: Q8FN71 uncharacterized protein; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain YP_003698057.1 InterPro IPR010147:IPR013422; KEGG: cdi:DIP2208 hypothetical protein; PFAM: CRISPR-associated protein CT1976; SPTR: Q6NEQ9 uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, N-terminal domain; CRISPR-associated protein Cas5, Ecoli subtype YP_003698058.1 InterPro IPR010148; KEGG: cdi:DIP2209 hypothetical protein; PFAM: CRISPR-associated protein CT1975; SPTR: Q6NEQ8 uncharacterized protein; TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CT1975-like protein; TIGRFAM: CRISPR-associated protein, Cse4 family YP_003698059.1 InterPro IPR013382; KEGG: cdi:DIP2210 hypothetical protein; PFAM: CRISPR-associated protein Cse2; SPTR: Q6NEQ7 uncharacterized protein; TIGRFAM: CRISPR-associated protein, Cse2 family; PFAM: CRISPR-associated protein Cse2 (CRISPR_cse2); TIGRFAM: CRISPR-associated protein, Cse2 family YP_003698060.1 KEGG: cdi:DIP2211 hypothetical protein; SPTR: Q6NEQ6 uncharacterized protein; PFAM: CRISPR-associated protein Cse1 (CRISPR_cse1); TIGRFAM: CRISPR-associated protein, Cse1 family YP_003698061.1 InterPro IPR010179; KEGG: cdi:DIP2212 hypothetical protein; PFAM: CRISPR-associated protein CT1974; SPTR: Q6NEQ5 uncharacterized protein; TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR associated protein; TIGRFAM: CRISPR-associated protein, Cse3 family YP_003698062.1 COGs: COG1203 helicase; InterPro IPR014001:IPR001650:IPR006474; KEGG: cdi:DIP2213 helicase; PFAM: helicase; SMART: DEAD-like helicase ; helicase domain protein; SPTR: Q6NEQ4 helicase; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: DEAD/DEAH box helicase; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; CRISPR-associated helicase Cas3 YP_003698063.1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729:IPR019851; KEGG: cdi:DIP2214 hypothetical protein; PFAM: protein of unknown function DUF48; SPTR: Q6NEQ3 uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; CRISPR-associated protein Cas1, ECOLI subtype YP_003698064.1 InterPro IPR010152; KEGG: cdi:DIP2215 hypothetical protein; PFAM: CRISPR-associated protein Cas2; SPTR: Q6NEQ2 uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR-associated protein (Cas_Cas2CT1978); TIGRFAM: CRISPR-associated protein Cas2, E. coli subfamily YP_003698065.1 KEGG: xau:Xaut_2374 electron-transferring-flavoprotein dehydrogenase; SPTR: A7IHX4 electron-transferring-flavoprotein dehydrogenase YP_003698066.1 KEGG: cjk:jk1789 transposase for IS3504i; SPTR: C2CT64 IS3504a transposase YP_003698067.1 COGs: COG2188 transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: ami:Amir_0404 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C6WGQ5 GntR family transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_003698068.1 InterPro IPR005829:IPR016196:IPR003663:IPR005828; KEGG: mlu:Mlut_15770 MFS transporter sugar porter family; PFAM: general substrate transporter; SPTR: Q0S1H0 Sugar transporter MFS superfamily protein; TIGRFAM: sugar transporter; PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter sugar porter (SP) family YP_003698069.1 COGs: COG0657 esterase/lipase; InterPro IPR000073:IPR013094; KEGG: ami:Amir_4661 alpha/beta hydrolase; PFAM: alpha/beta hydrolase; alpha/beta hydrolase fold; SPTR: D0WQ59 Hydrolase, alpha/beta fold family; PFAM: alpha/beta hydrolase fold YP_003698070.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR016196:IPR011701; KEGG: apj:APJL_1873 sugar phosphate permease; PFAM: major facilitator superfamily MFS_1; SPTR: B0BT09 Sugar phosphate permease; PFAM: Major Facilitator Superfamily YP_003698071.1 COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR001898; KEGG: cdi:DIP0179 hypothetical protein; PFAM: sodium/sulfate symporter; SPTR: C0W4H0 DASS family divalent anion:sodium (Na+) symporter; TIGRFAM: anion transporter; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter YP_003698072.1 KEGG: pac:PPA1569 hypothetical protein; SPTR: C0W0X9 uncharacterized protein YP_003698073.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR013221:IPR013564; KEGG: cur:cur_1907 UDP-N-acetylmuramyl tripeptide synthase; PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; SPTR: C2BT38 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Domain of unknown function (DUF1727); Mur ligase middle domain YP_003698074.1 COGs: COG3442 glutamine amidotransferase; InterPro IPR017929:IPR011698; KEGG: gbr:Gbro_0441 CobB/CobQ domain protein glutamine amidotransferase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; SPTR: C2BT37 Possible adenosylcobyric acid synthase, glutamine-hydrolyzing; PFAM: CobB/CobQ-like glutamine amidotransferase domain YP_003698075.1 COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR010280; KEGG: kra:Krad_4319 23S rRNA (uracil-5-)-methyltransferase RumB; PFAM: (uracil-5)-methyltransferase; SPTR: A6WG43 23S rRNA (uracil-5-)-methyltransferase RumB; PFAM: tRNA (uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB YP_003698076.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834; KEGG: svi:Svir_38090 haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having dd or ED; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C7MRG7 Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_003698079.1 COGs: COG2801 transposase and inactivated derivatives; InterPro IPR012337:IPR001584; KEGG: kse:Ksed_22000 transposase; PFAM: Integrase catalytic region; SPTR: A7B9Y7 uncharacterized protein; PFAM: Integrase core domain YP_003698080.1 InterPro IPR002514; KEGG: kse:Ksed_22010 transposase; PFAM: transposase IS3/IS911 family protein; SPTR: C2BM30 ISMyma01 transposase; PFAM: transposase YP_003698081.1 COGs: COG1643 HrpA-like helicase; InterProIPR002464:IPR014001:IPR001650:IPR014021:IPR 011545:IPR007502:IPR013689:IPR010225; KEGG: tcu:Tcur_1990 ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; DEAD/DEAH box helicase; helicase-associated domain protein; SMART: DEAD-like helicase ; helicase; SPTR: D1BHA4 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase conserved C-terminal domain; ATP-dependent helicase C-terminal; Helicase associated domain (HA2); DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB YP_003698082.1 InterPro IPR018247:IPR009057:IPR001647; KEGG: sco:SCO5906 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C0VWX7 Possible transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_003698083.1 KEGG: dvm:DvMF_0774 CheA signal transduction histidine kinase; SPTR: D0WLD1 SmpA/OmlA protein YP_003698084.1 COGs: COG0343 queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR002616:IPR004803; KEGG: rha:RHA1_ro04173 queuine tRNA-ribosyltransferase; PFAM: queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: D0WLD0 tRNA-guanine transglycosylase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming YP_003698085.1 KEGG: fnu:FN1780 hypothetical protein; SPTR: D0WLC6 uncharacterized protein YP_003698086.1 KEGG: gym:GYMC10_5038 hypothetical protein; SPTR: B7C930 uncharacterized protein (Fragment) YP_003698087.1 KEGG: ckp:ckrop_1874 hypothetical protein; SPTR: C4LL85 uncharacterized protein YP_003698088.1 COGs: COG1651 protein-disulfide isomerase; InterPro IPR012336:IPR017936:IPR001853:IPR012335; KEGG: cgt:cgR_0023 hypothetical protein; PFAM: DSBA oxidoreductase; SPTR: A4Q9U1 uncharacterized protein; PFAM: DSBA-like thioredoxin domain YP_003698089.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: bcv:Bcav_3737 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: D0WLB7 acyltransferase family protein; PFAM: acyltransferase YP_003698090.1 COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR018170:IPR001395:IPR020471; KEGG: mgi:Mflv_4697 2,5-didehydrogluconate reductase; PFAM: aldo/keto reductase; PRIAM: 2,5-didehydrogluconate reductase; SPTR: A4TFA5 2,5-didehydrogluconate reductase; PFAM: Aldo/keto reductase family YP_003698091.1 InterPro IPR003607:IPR006674:IPR006675; KEGG: tde:TDE1373 HD domain-containing protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Q73MY3 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_003698092.1 COGs: COG0305 Replicative DNA helicase; InterProIPR003593:IPR007693:IPR007694:IPR007692:IPR 016136; KEGG: bcv:Bcav_4175 replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: ATPase AAA; SPTR: D0WL61 Replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_003698093.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: bcv:Bcav_4176 MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: D0WL60 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_003698094.1 COGs: COG4932 outer membrane protein; InterPro IPR008454; KEGG: soz:Spy49_0112 collagen binding protein; PFAM: Cna B domain protein; SPTR: B5XJF1 collagen binding protein; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003698095.1 COGs: COG4724 endo-beta-N-acetylglucosaminidase D; InterPro IPR008957:IPR003961:IPR005201; KEGG: pac:PPA1805 endo-beta-N-acetylglucosaminidase family protein; PFAM: glycoside hydrolase family 85; Fibronectin type III domain protein; SPTR: Q6A6T2 endo-beta-N-acetylglucosaminidase family protein; PFAM: glycosyl hydrolase family 85; TIGRFAM: LPXTG-motif cell wall anchor domain YP_003698096.1 COGs: COG0359 ribosomal protein L9; InterPro IPR020070:IPR020069:IPR009027:IPR020594; KEGG: bfa:Bfae_31750 50S ribosomal protein L9P; PFAM: ribosomal protein L9-like; SPTR: D0WL46 ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9, N-terminal domain; ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9 YP_003698097.1 COGs: COG0238 ribosomal protein S18; InterPro IPR018275:IPR001648; KEGG: xce:Xcel_3353 ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: D0WL45 ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_003698098.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR016027:IPR000424:IPR011344:IPR012340; KEGG: xce:Xcel_3354 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: D0WL44 Single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_003698099.1 COGs: COG0360 ribosomal protein S6; InterPro IPR000529:IPR020814:IPR014717; KEGG: bfa:Bfae_31780 30S ribosomal protein S6P; PFAM: ribosomal protein S6, bacterial-like; SPTR: C0W4W9 ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_003698100.1 COGs: COG0744 membrane carboxypeptidase (penicillin-binding protein); InterPro IPR012338:IPR001264:IPR001460; KEGG: bcv:Bcav_4182 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: peptidoglycan glycosyltransferase; SPTR: D0WL42 Penicillin-binding protein; manually curated; PFAM: Penicillin binding protein transpeptidase domain; transglycosylase YP_003698101.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: nfa:nfa32820 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: D0WL41 uncharacterized protein; PFAM: Domain of unknown function DUF20 YP_003698102.1 InterPro IPR016196:IPR011701; KEGG: bcv:Bcav_4203 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C1RM73 Major Facilitator Superfamily transporter; PFAM: Major Facilitator Superfamily YP_003698103.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterProIPR003607:IPR002646:IPR006674:IPR014065:IPR 006675; KEGG: jde:Jden_2542 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: D0WL39 tRNA adenylyltransferase; TIGRFAM: tRNA adenylyltransferase; metal dependent phophohydrolase; manually curated; PFAM: HD domain; poly A polymerase head domain; TIGRFAM: tRNA adenylyltransferase; uncharacterized domain HDIG YP_003698104.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR020084:IPR015797:IPR020476:IPR000086; KEGG: bcv:Bcav_4208 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: D0WL38 MutT/NUDIX family protein; manually curated; PFAM: NUDIX domain YP_003698105.1 KEGG: bcv:Bcav_4209 hypothetical protein; SPTR: D0WL37 uncharacterized protein YP_003698106.1 InterPro IPR011009; KEGG: xce:Xcel_3367 hypothetical protein; SPTR: D1BRV0 uncharacterized protein YP_003698107.1 COGs: COG0492 thioredoxin reductase; InterPro IPR008255:IPR000103:IPR013027:IPR005982; KEGG: bfa:Bfae_31890 thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: D0WL35 thioredoxin-disulfide reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_003698108.1 KEGG: csa:Csal_3245 ATP-dependent DNA helicase RecG YP_003698109.1 COGs: COG1167 transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR015424:IPR004839:IPR015421; KEGG: bcv:Bcav_4214 GntR family transcriptional regulator; PFAM: aminotransferase class I and II; SPTR: D0WL32 Aminotransferase classes I and II protein; PFAM: Aminotransferase class I and II YP_003698110.1 COGs: COG1475 transcriptional regulator; InterPro IPR003115:IPR004437; KEGG: bcv:Bcav_4217 ParB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: C5C6N1 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins YP_003698111.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: jde:Jden_2552 cobyrinic acid ac-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; SPTR: C7R3N9 cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_003698112.1 COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR005829:IPR003682; KEGG: bcv:Bcav_4220 methyltransferase GidB; PFAM: glucose inhibited division protein; SPTR: D0WL16 16S rRNA methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB YP_003698113.1 InterPro IPR002525:IPR003346; KEGG: mlu:Mlut_12160 transposase; PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; SPTR: C0W956 transposase, IS111A/IS1328/IS1533 (Fragment); PFAM: transposase IS116/IS110/IS902 family; transposase YP_003698114.1 COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: bcv:Bcav_4221 single-stranded nucleic acid binding R3H domain protein; PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; SPTR: D0WL15 R3H domain-containing protein; PFAM: R3H domain YP_003698115.1 COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708:IPR020001; KEGG: bcv:Bcav_4222 60 kDa inner membrane insertion protein; PFAM: hypothetical protein; SPTR: D0WL13 Preprotein translocase, YidC subunit; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain YP_003698116.1 COGs: COG0759 conserved hypothetical protein; InterPro IPR010916:IPR002696; KEGG: nml:Namu_5413 protein of unknown function DUF37; PFAM: protein of unknown function DUF37; SPTR: C0W4T4 uncharacterized protein; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein TIGR00278 YP_003698117.1 COGs: COG0594 RNase P protein component; InterPro IPR020568:IPR000100:IPR014721; KEGG: tcu:Tcur_4984 ribonuclease P protein component; PFAM: ribonuclease P protein; SPTR: D1A969 ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial YP_003698118.1 InterPro IPR000271; KEGG: nml:Namu_5415 ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: C0W4T2 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type