-- dump date 20240506_001919 -- class Genbank::Contig -- table contig_comment -- id comment NC_013851.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001896.1.REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane DahlREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de)REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de)REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch waterREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25CREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: PhototrophREFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001896.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## COMPLETENESS: full length. NC_013852.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001897.1.REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane DahlREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de)REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de)REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch waterREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25CREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: PhototrophREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001897.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_013862.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001898.1.REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane DahlREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de)REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de)REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch waterREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25CREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: PhototrophREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001898.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084488 Source DNA and bacteria available from Christiane Dahl (ChDahl@uni-bonn.de) Contacts: Christiane Dahl (ChDahl@uni-bonn.de) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Allochromatium vinosum DSM 180 Culture Collection ID :: DSM 180, ATCC 17899 GOLD Stamp ID :: Gi02104 Isolation Site :: Ditch water Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Energy Source :: Phototroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/07/2024 10:21:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,278 Genes (coding) :: 3,255 CDSs (with protein) :: 3,255 Genes (RNA) :: 64 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 6 of 23 Pseudo Genes (incomplete) :: 16 of 23 Pseudo Genes (internal stop) :: 2 of 23 Pseudo Genes (multiple problems) :: 1 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length.