-- dump date 20140618_194019 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 316275000001 SEQ_END SEQ_END NC_011311.1 83540 83540 DR NC_011311.1; contig end 83540..83540 Aliivibrio salmonicida LFI1238 316275000002 SEQ_END SEQ_END NC_011312.1 3325165 3325165 DR NC_011312.1; contig end 3325165..3325165 Aliivibrio salmonicida LFI1238 316275000003 SEQ_END SEQ_END NC_011313.1 1206461 1206461 DR NC_011313.1; contig end 1206461..1206461 Aliivibrio salmonicida LFI1238 316275000004 SEQ_END SEQ_END NC_011314.1 30807 30807 DR NC_011314.1; contig end 30807..30807 Aliivibrio salmonicida LFI1238 316275000005 SEQ_END SEQ_END NC_011315.1 5360 5360 DR NC_011315.1; contig end 5360..5360 Aliivibrio salmonicida LFI1238 316275000006 SEQ_END SEQ_END NC_011316.1 4327 4327 DR NC_011316.1; contig end 4327..4327 Aliivibrio salmonicida LFI1238 YP_002261491.1 CDS traY NC_011311.1 111 281 D Similar to Escherichia coli Protein traY UniProt:P05835 (75 aa) fasta scores: E()=0.0012, 53.846% id in 39 aa; conjugative transfer protein TraY 111..281 Aliivibrio salmonicida LFI1238 6961434 YP_002261492.1 CDS traA NC_011311.1 423 704 D Similar to Escherichia coli Fimbrial protein precursor (Pilin) TraA UniProt:P14496 (119 aa) fasta scores: E()=0.11, 35.955% id in 89 aa; conjugative transfer protein TraA, putative fimbrial protein precursor 423..704 Aliivibrio salmonicida LFI1238 6961431 YP_002261493.1 CDS traL NC_011311.1 733 1035 D Similar to Salmonella pullorum Protein TraL UniProt:Q7BCG6 (103 aa) fasta scores: E()=0.0075, 27.174% id in 92 aa; conjugative transfer protein TraL 733..1035 Aliivibrio salmonicida LFI1238 6961489 YP_002261494.1 CDS traE NC_011311.1 1035 1595 D Similar to Escherichia coli Protein TraE UniProt:Q46998 (188 aa) fasta scores: E()=4.6e-07, 29.487% id in 156 aa; conjugative transfer protein TraE 1035..1595 Aliivibrio salmonicida LFI1238 6961427 YP_002261495.1 CDS traK NC_011311.1 1592 2347 D Similar to Escherichia coli Protein TraK UniProt:Q47003 (242 aa) fasta scores: E()=0.00028, 23.137% id in 255 aa; conjugative transfer protein TraK 1592..2347 Aliivibrio salmonicida LFI1238 6961493 YP_002261496.1 CDS traB NC_011311.1 2337 3767 D Similar to Salmonella typhi Protein TraB UniProt:Q8KNL7 (453 aa) fasta scores: E()=3.7e-28, 29.399% id in 466 aa; conjugative transfer protein TraB 2337..3767 Aliivibrio salmonicida LFI1238 6961426 YP_002261497.1 CDS VSAL_p840_07 NC_011311.1 3780 4181 D putative lipoprotein, putative TraV protein 3780..4181 Aliivibrio salmonicida LFI1238 6961490 YP_002261498.1 CDS traC NC_011311.1 4191 6722 D Similar to Escherichia coli Protein TraC UniProt:P18004 (875 aa) fasta scores: E()=3.4e-62, 29.870% id in 847 aa; conjugative transfer protein TraC 4191..6722 Aliivibrio salmonicida LFI1238 6961435 YP_002261499.1 CDS trbI NC_011311.1 6719 7066 D Similar to Salmonella typhi Protein TrbI UniProt:Q8KNL0 (154 aa) fasta scores: E()=3.1e-07, 34.579% id in 107 aa; trbi; conjugative transfer protein TrbI 6719..7066 Aliivibrio salmonicida LFI1238 6961491 YP_002261500.1 CDS traW NC_011311.1 7063 7719 D conjugative transfer protein TraW 7063..7719 Aliivibrio salmonicida LFI1238 6961433 YP_002261501.1 CDS traU NC_011311.1 7732 8736 D conjugative transfer protein TraU 7732..8736 Aliivibrio salmonicida LFI1238 6961430 YP_002261502.1 CDS VSAL_p840_12 NC_011311.1 9050 9817 D hypothetical protein, putative conjugative transfer protein TrbC 9050..9817 Aliivibrio salmonicida LFI1238 6961429 YP_002261503.1 CDS traN NC_011311.1 9821 11539 D TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 9821..11539 Aliivibrio salmonicida LFI1238 6961436 YP_002261504.1 CDS traF NC_011311.1 11549 12292 D Similar to Escherichia coli Protein TraF UniProt:P14497 (247 aa) fasta scores: E()=1.4e-17, 30.078% id in 256 aa; conjugative transfer protein TraF 11549..12292 Aliivibrio salmonicida LFI1238 6961428 YP_002261505.1 CDS VSAL_p840_15 NC_011311.1 12282 13049 D membrane protein 12282..13049 Aliivibrio salmonicida LFI1238 6961494 YP_002261506.1 CDS trbB NC_011311.1 13119 13544 D conjugative transfer protein TrbB 13119..13544 Aliivibrio salmonicida LFI1238 6961437 YP_002261507.1 CDS traH NC_011311.1 13541 14926 D conjugative transfer protein TraH 13541..14926 Aliivibrio salmonicida LFI1238 6961432 YP_002261508.1 CDS traG NC_011311.1 14923 17718 D conjugative transfer protein TraG 14923..17718 Aliivibrio salmonicida LFI1238 6961496 YP_002261509.1 CDS VSAL_p840_19 NC_011311.1 17817 18314 D hypothetical protein 17817..18314 Aliivibrio salmonicida LFI1238 6961495 YP_002261510.1 CDS traD NC_011311.1 18326 20404 D conjugative transfer protein TraD 18326..20404 Aliivibrio salmonicida LFI1238 6961438 YP_002261511.1 CDS traI NC_011311.1 20545 26355 D protein TraI (DNA helicase I) 20545..26355 Aliivibrio salmonicida LFI1238 6961492 YP_002261512.1 CDS VSAL_p840_22 NC_011311.1 26399 26752 R hypothetical protein complement(26399..26752) Aliivibrio salmonicida LFI1238 6961425 YP_002261513.1 CDS pilT NC_011311.1 27390 27827 R transglycosylase PilT complement(27390..27827) Aliivibrio salmonicida LFI1238 6961439 YP_002261514.1 CDS VSAL_p840_24 NC_011311.1 27861 28256 R hypothetical protein complement(27861..28256) Aliivibrio salmonicida LFI1238 6961487 YP_002261515.1 CDS ardC NC_011311.1 28293 29294 R antirestriction protein ArdC complement(28293..29294) Aliivibrio salmonicida LFI1238 6961440 YP_002261516.1 CDS VSAL_p840_26 NC_011311.1 30133 30489 R hypothetical protein complement(30133..30489) Aliivibrio salmonicida LFI1238 6961483 YP_002261517.1 CDS VSAL_p840_27 NC_011311.1 30649 31068 R hypothetical protein complement(30649..31068) Aliivibrio salmonicida LFI1238 6961441 YP_002261518.1 CDS hupA NC_011311.1 31361 31636 D DNA-binding protein HU-alpha 31361..31636 Aliivibrio salmonicida LFI1238 6961442 YP_002261519.1 CDS VSAL_p840_29 NC_011311.1 31792 32052 R hypothetical protein complement(31792..32052) Aliivibrio salmonicida LFI1238 6961485 YP_002261520.1 CDS VSAL_p840_30 NC_011311.1 32178 32468 R hypothetical protein complement(32178..32468) Aliivibrio salmonicida LFI1238 6961443 YP_002261521.1 CDS VSAL_p840_31 NC_011311.1 32491 32940 R hypothetical protein complement(32491..32940) Aliivibrio salmonicida LFI1238 6961444 YP_002261522.1 CDS VSAL_p840_32 NC_011311.1 32930 33313 R hypothetical protein complement(32930..33313) Aliivibrio salmonicida LFI1238 6961445 YP_002261523.1 CDS radC NC_011311.1 33384 33848 R DNA repair protein RadC complement(33384..33848) Aliivibrio salmonicida LFI1238 6961446 YP_002261524.1 CDS VSAL_p840_34 NC_011311.1 33897 34496 R hypothetical protein complement(33897..34496) Aliivibrio salmonicida LFI1238 6961488 YP_002261525.1 CDS hcp NC_011311.1 35695 36213 D secreted protein Hcp-2 (haemolysin co-regulated protein) 35695..36213 Aliivibrio salmonicida LFI1238 6961447 YP_002261526.1 CDS VSAL_p840_36 NC_011311.1 36284 38548 D VgrG protein, VgrG-2 36284..38548 Aliivibrio salmonicida LFI1238 6961484 YP_002261527.1 CDS VSAL_p840_37 NC_011311.1 38530 39123 D hypothetical protein 38530..39123 Aliivibrio salmonicida LFI1238 6961448 YP_002261528.1 CDS VSAL_p840_38 NC_011311.1 39139 41583 D putative cell wall degradation protein 39139..41583 Aliivibrio salmonicida LFI1238 6961449 YP_002261529.1 CDS VSAL_p840_39 NC_011311.1 41661 42728 R putative lipoprotein complement(41661..42728) Aliivibrio salmonicida LFI1238 6961450 YP_002261530.1 CDS VSAL_p840_40 NC_011311.1 43036 44232 D Weakly similar to Escherichia coli Plasmid partition protein A UniProt:P07620 (398 aa) fasta scores: E()=4.6e-09, 27.155% id in 232 aa; putative plasmid partition protein A 43036..44232 Aliivibrio salmonicida LFI1238 6961451 YP_002261531.1 CDS VSAL_p840_41 NC_011311.1 44232 45239 D Weakly similar to Escherichia coli Protein sopB (Plasmid partition protein B) UniProt:P62558 (EMBL:X04619 (323 aa) fasta scores: E()=1.1e-09, 29.392% id in 296 aa; putative plasmid partition protein B 44232..45239 Aliivibrio salmonicida LFI1238 6961452 YP_002261532.1 CDS VSAL_p840_42 NC_011311.1 45731 46276 R putative resolvase complement(45731..46276) Aliivibrio salmonicida LFI1238 6961453 YP_002261533.1 CDS VSAL_p840_43 NC_011311.1 46692 46922 R hypothetical protein complement(46692..46922) Aliivibrio salmonicida LFI1238 6961454 YP_002261534.1 CDS VSAL_p840_44 NC_011311.1 46932 47567 R putative resolvase complement(46932..47567) Aliivibrio salmonicida LFI1238 6961455 YP_002261535.1 CDS VSAL_p840_45 NC_011311.1 47865 49046 R transposase complement(47865..49046) Aliivibrio salmonicida LFI1238 6961456 YP_002261536.1 CDS VSAL_p840_46 NC_011311.1 49322 51541 D putative cell wall degradation protein 49322..51541 Aliivibrio salmonicida LFI1238 6961457 YP_002261537.1 CDS VSAL_p840_47 NC_011311.1 51541 51930 D hypothetical protein 51541..51930 Aliivibrio salmonicida LFI1238 6961458 YP_002261538.1 CDS VSAL_p840_48 NC_011311.1 52192 52560 R hypothetical protein complement(52192..52560) Aliivibrio salmonicida LFI1238 6961459 YP_002261539.1 CDS VSAL_p840_49 NC_011311.1 53193 54152 D hypothetical protein 53193..54152 Aliivibrio salmonicida LFI1238 6961460 YP_002261540.1 CDS VSAL_p840_50 NC_011311.1 54700 55974 D hypothetical protein 54700..55974 Aliivibrio salmonicida LFI1238 6961461 YP_002261541.1 CDS VSAL_p840_51 NC_011311.1 56054 56626 D hypothetical protein 56054..56626 Aliivibrio salmonicida LFI1238 6961462 YP_002261542.1 CDS VSAL_p840_52 NC_011311.1 57061 57801 R transposase complement(57061..57801) Aliivibrio salmonicida LFI1238 6961463 YP_002261543.1 CDS VSAL_p840_53 NC_011311.1 58377 58655 R putative plasmid stabilization system protein complement(58377..58655) Aliivibrio salmonicida LFI1238 6961464 YP_002261544.1 CDS VSAL_p840_54 NC_011311.1 58652 58936 R hypothetical protein complement(58652..58936) Aliivibrio salmonicida LFI1238 6961465 YP_002261545.1 CDS VSAL_p840_55 NC_011311.1 59510 61699 D Similar to Streptomyces thermoviolaceus Beta-N-Acetylglucosaminidase precursor UniProt:O82840 (632 aa) fasta scores: E()=3.2e-09, 24.260% id in 507 aa; putative beta-N-acetylhexosaminidase precursor 59510..61699 Aliivibrio salmonicida LFI1238 6961466 YP_002261546.1 CDS VSAL_p840_56 NC_011311.1 62129 64735 D hypothetical protein 62129..64735 Aliivibrio salmonicida LFI1238 6961467 YP_002261547.1 CDS VSAL_p840_57 NC_011311.1 64735 67281 D hypothetical protein 64735..67281 Aliivibrio salmonicida LFI1238 6961468 YP_002261548.1 CDS VSAL_p840_58 NC_011311.1 67397 69208 R hypothetical protein complement(67397..69208) Aliivibrio salmonicida LFI1238 6961469 YP_002261549.1 CDS VSAL_p840_59 NC_011311.1 69201 70049 R hypothetical protein complement(69201..70049) Aliivibrio salmonicida LFI1238 6961470 YP_002261550.1 CDS VSAL_p840_60 NC_011311.1 70039 71070 R hypothetical protein complement(70039..71070) Aliivibrio salmonicida LFI1238 6961471 YP_002261551.1 CDS VSAL_p840_61 NC_011311.1 71071 71682 R hypothetical protein complement(71071..71682) Aliivibrio salmonicida LFI1238 6961472 YP_002261552.1 CDS VSAL_p840_62 NC_011311.1 71703 72668 R putative integrase complement(71703..72668) Aliivibrio salmonicida LFI1238 6961473 YP_002261553.1 CDS VSAL_p840_63 NC_011311.1 72757 73302 R hypothetical protein complement(72757..73302) Aliivibrio salmonicida LFI1238 6961474 YP_002261554.1 CDS VSAL_p840_64 NC_011311.1 73303 74616 R calcineurin-like phosphoesterase complement(73303..74616) Aliivibrio salmonicida LFI1238 6961475 YP_002261555.1 CDS VSAL_p840_65 NC_011311.1 74928 76940 R hypothetical protein complement(74928..76940) Aliivibrio salmonicida LFI1238 6961476 YP_002261556.1 CDS hupA NC_011311.1 77075 77350 R DNA-binding protein HU-alpha complement(77075..77350) Aliivibrio salmonicida LFI1238 6961477 YP_002261557.1 CDS VSAL_p840_67 NC_011311.1 77364 77960 R hypothetical protein complement(77364..77960) Aliivibrio salmonicida LFI1238 6961486 YP_002261558.1 CDS VSAL_p840_68 NC_011311.1 78757 79617 R hypothetical protein complement(78757..79617) Aliivibrio salmonicida LFI1238 6961478 YP_002261559.1 CDS VSAL_p840_69 NC_011311.1 80289 80525 D hypothetical protein 80289..80525 Aliivibrio salmonicida LFI1238 6961479 YP_002261560.1 CDS VSAL_p840_70 NC_011311.1 80554 81303 R hypothetical protein complement(80554..81303) Aliivibrio salmonicida LFI1238 6961480 YP_002261561.1 CDS VSAL_p840_71 NC_011311.1 81300 82244 R membrane protein complement(81300..82244) Aliivibrio salmonicida LFI1238 6961481 YP_002261562.1 CDS VSAL_p840_72 NC_011311.1 82244 83374 R membrane protein complement(82244..83374) Aliivibrio salmonicida LFI1238 6961482 YP_002261563.1 CDS mioC NC_011312.1 312 746 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(312..746) Aliivibrio salmonicida LFI1238 6989445 YP_002261564.1 CDS trmE NC_011312.1 811 2178 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(811..2178) Aliivibrio salmonicida LFI1238 6988808 YP_002261565.1 CDS oxaA NC_011312.1 2277 3902 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; protein translocase component YidC complement(2277..3902) Aliivibrio salmonicida LFI1238 6989323 YP_002261566.1 CDS rnpA NC_011312.1 4129 4482 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(4129..4482) Aliivibrio salmonicida LFI1238 6988939 YP_002261567.1 CDS rpmH NC_011312.1 4499 4633 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4499..4633) Aliivibrio salmonicida LFI1238 6989139 YP_002261568.1 CDS VSAL_I0006 NC_011312.1 4820 5557 R amino-acid ABC transporter ATP-binding protein complement(4820..5557) Aliivibrio salmonicida LFI1238 6989177 YP_002261569.1 CDS VSAL_I0007 NC_011312.1 5554 6225 R amino-acid ABC transporter permease protein complement(5554..6225) Aliivibrio salmonicida LFI1238 6986249 YP_002261570.1 CDS VSAL_I0008 NC_011312.1 6380 7132 R Similar to Escherichia coli Cystine-binding periplasmic protein precursor FliY UniProt:P0AEM9 (266 aa) fasta scores: E()=6.8e-24, 40.969% id in 227 aa; amino acid ABC transportersubstrate-binding protein complement(6380..7132) Aliivibrio salmonicida LFI1238 6986250 YP_002261571.1 CDS dnaA NC_011312.1 7427 8833 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 7427..8833 Aliivibrio salmonicida LFI1238 6986251 YP_002261572.1 CDS dnaN NC_011312.1 8866 9975 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 8866..9975 Aliivibrio salmonicida LFI1238 6988411 YP_002261573.1 CDS recF NC_011312.1 9989 11068 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 9989..11068 Aliivibrio salmonicida LFI1238 6988419 YP_002261574.1 CDS gyrB NC_011312.1 11086 13503 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 11086..13503 Aliivibrio salmonicida LFI1238 6989079 YP_002261575.1 CDS VSAL_I0014 NC_011312.1 14049 15239 R transposase complement(14049..15239) Aliivibrio salmonicida LFI1238 6986252 YP_002261576.1 CDS VSAL_I0015 NC_011312.1 16295 16642 R transposase complement(16295..16642) Aliivibrio salmonicida LFI1238 6986253 YP_002261577.1 CDS VSAL_I0016 NC_011312.1 16639 16953 R transposase complement(16639..16953) Aliivibrio salmonicida LFI1238 6986254 YP_002261578.1 CDS groEL NC_011312.1 17172 18809 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(17172..18809) Aliivibrio salmonicida LFI1238 6986255 YP_002261579.1 CDS groS1 NC_011312.1 18902 19189 R molecular chaperone GroES complement(18902..19189) Aliivibrio salmonicida LFI1238 6988625 YP_002261580.1 CDS VSAL_I0019 NC_011312.1 19716 20909 R transposase complement(19716..20909) Aliivibrio salmonicida LFI1238 6988626 YP_002261581.1 CDS VSAL_I0020 NC_011312.1 21269 21523 D hypothetical protein 21269..21523 Aliivibrio salmonicida LFI1238 6986256 YP_002261582.1 CDS VSAL_I0021 NC_011312.1 22530 23489 D antirestriction protein 22530..23489 Aliivibrio salmonicida LFI1238 6986257 YP_002261583.1 CDS VSAL_I0022 NC_011312.1 23916 25109 R transposase complement(23916..25109) Aliivibrio salmonicida LFI1238 6986258 YP_002261584.1 CDS VSAL_I0023 NC_011312.1 25189 26034 D metallo-beta-lactamase superfamily protein 25189..26034 Aliivibrio salmonicida LFI1238 6986259 YP_002261585.1 CDS cyaB NC_011312.1 26437 26988 D adenylate cyclase 26437..26988 Aliivibrio salmonicida LFI1238 6986260 YP_002261586.1 CDS VSAL_I0025 NC_011312.1 27382 27747 D Expression may be regulated by Fur; hypothetical protein 27382..27747 Aliivibrio salmonicida LFI1238 6988365 YP_002261587.1 CDS VSAL_I0026 NC_011312.1 27776 28180 D hypothetical protein 27776..28180 Aliivibrio salmonicida LFI1238 6986261 YP_002261588.1 CDS VSAL_I0027 NC_011312.1 28436 29215 D Similar to Escherichia coli o157:h- Plasmid pSFO157 Wb0013. UniProt:Q8VU43 (262 aa) fasta scores: E()=2.3e-08,24.254% id in 268 aa; hypothetical protein 28436..29215 Aliivibrio salmonicida LFI1238 6986262 YP_002261589.1 CDS VSAL_I0028 NC_011312.1 29602 30555 D hypothetical protein 29602..30555 Aliivibrio salmonicida LFI1238 6986263 YP_002261590.1 CDS VSAL_I0029 NC_011312.1 30807 31769 R transposase complement(30807..31769) Aliivibrio salmonicida LFI1238 6986264 YP_002261591.1 CDS VSAL_I0030 NC_011312.1 32166 32456 D hypothetical protein 32166..32456 Aliivibrio salmonicida LFI1238 6986265 YP_002261592.1 CDS VSAL_I0031 NC_011312.1 33193 35412 D cell wall degradation enzyme 33193..35412 Aliivibrio salmonicida LFI1238 6986266 YP_002261593.1 CDS VSAL_I0032 NC_011312.1 35412 35801 D hypothetical protein 35412..35801 Aliivibrio salmonicida LFI1238 6986267 YP_002261594.1 CDS VSAL_I0033 NC_011312.1 35944 36303 R hypothetical protein complement(35944..36303) Aliivibrio salmonicida LFI1238 6986268 YP_002261595.1 CDS VSAL_I0034 NC_011312.1 36382 37035 R hypothetical protein complement(36382..37035) Aliivibrio salmonicida LFI1238 6986269 YP_002261596.1 CDS VSAL_I0035 NC_011312.1 37276 38466 R transposase complement(37276..38466) Aliivibrio salmonicida LFI1238 6986270 YP_002261597.1 CDS VSAL_I0038 NC_011312.1 40119 41000 D transposase 40119..41000 Aliivibrio salmonicida LFI1238 6986273 YP_002261598.1 CDS VSAL_I0039 NC_011312.1 41289 42239 D transposase 41289..42239 Aliivibrio salmonicida LFI1238 6986274 YP_002261599.1 CDS VSAL_I0040 NC_011312.1 42740 43933 D transposase 42740..43933 Aliivibrio salmonicida LFI1238 6986275 YP_002261600.1 CDS VSAL_I0042 NC_011312.1 44867 46393 D competence protein 44867..46393 Aliivibrio salmonicida LFI1238 6988708 YP_002261601.1 CDS VSAL_I0043 NC_011312.1 46481 47350 D Similar to Escherichia coli acyltransferase YihG UniProt:P32129 (310 aa) fasta scores: E()=5.3e-48, 42.612% id in 291 aa; acyltransferase 46481..47350 Aliivibrio salmonicida LFI1238 6986277 YP_002261602.1 CDS dsbA NC_011312.1 47417 48040 R thiol/disulfide interchange protein DsbA precursor complement(47417..48040) Aliivibrio salmonicida LFI1238 6986278 YP_002261603.1 CDS rdoA NC_011312.1 48066 49049 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(48066..49049) Aliivibrio salmonicida LFI1238 6988423 YP_002261604.1 CDS VSAL_I0046 NC_011312.1 49108 50526 R Expression may be regulated by Fur; ferredoxin complement(49108..50526) Aliivibrio salmonicida LFI1238 6989074 YP_002261605.1 CDS VSAL_I0047 NC_011312.1 50752 51015 R hypothetical protein complement(50752..51015) Aliivibrio salmonicida LFI1238 6986279 YP_002261606.1 CDS VSAL_I0048 NC_011312.1 51533 52318 D sporulation-control protein 51533..52318 Aliivibrio salmonicida LFI1238 6986280 YP_002261607.1 CDS hlyIII NC_011312.1 52420 53067 D hemolysin III 52420..53067 Aliivibrio salmonicida LFI1238 6986281 YP_002261608.1 CDS VSAL_I0050 NC_011312.1 53364 54557 R transposase complement(53364..54557) Aliivibrio salmonicida LFI1238 6988672 YP_002261609.1 CDS cspV NC_011312.1 54711 54920 R cold shock protein complement(54711..54920) Aliivibrio salmonicida LFI1238 6986282 YP_002261610.1 CDS ilvA NC_011312.1 55198 56730 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(55198..56730) Aliivibrio salmonicida LFI1238 6988356 YP_002261611.1 CDS ilvD NC_011312.1 56735 58207 R The CDS appears to have a deletion of 130 amino acid residues after codon 297 in comparison to orthologues; dihydroxy-acid dehydratase complement(56735..58207) Aliivibrio salmonicida LFI1238 6988705 YP_002261612.1 CDS ilvM NC_011312.1 58234 58482 R acetolactate synthase 2 regulatory subunit complement(58234..58482) Aliivibrio salmonicida LFI1238 6988707 YP_002261613.1 CDS VSAL_I0056 NC_011312.1 59847 61040 D transposase 59847..61040 Aliivibrio salmonicida LFI1238 6988709 YP_002261614.1 CDS VSAL_I0057 NC_011312.1 61632 62159 D Expression may be regulated by Fur; hypothetical protein 61632..62159 Aliivibrio salmonicida LFI1238 6986283 YP_002261615.1 CDS VSAL_I0058 NC_011312.1 62442 63239 D Similar to Bacillus subtilis Sporulation initiation inhibitor protein Soj UniProt:P37522 (253 aa) fasta scores: E()=1.6e-13, 32.389% id in 247 aa; ParA chromosome partitioning protein 62442..63239 Aliivibrio salmonicida LFI1238 6986284 YP_002261616.1 CDS VSAL_I0059 NC_011312.1 63236 64210 D chromosome partitioning protein ParB 63236..64210 Aliivibrio salmonicida LFI1238 6986285 YP_002261617.1 CDS VSAL_I0060 NC_011312.1 64200 64604 D hypothetical protein 64200..64604 Aliivibrio salmonicida LFI1238 6986286 YP_002261618.1 CDS VSAL_I0061 NC_011312.1 64789 65160 D hypothetical protein 64789..65160 Aliivibrio salmonicida LFI1238 6986287 YP_002261619.1 CDS VSAL_I0062 NC_011312.1 65851 66444 R hypothetical protein complement(65851..66444) Aliivibrio salmonicida LFI1238 6986288 YP_002261620.1 CDS VSAL_I0065 NC_011312.1 69062 69418 D transposase 69062..69418 Aliivibrio salmonicida LFI1238 6986291 YP_002261621.1 CDS VSAL_I0066 NC_011312.1 69494 69790 D transposase 69494..69790 Aliivibrio salmonicida LFI1238 6986292 YP_002261622.1 CDS VSAL_I0069 NC_011312.1 72716 73063 R transposase complement(72716..73063) Aliivibrio salmonicida LFI1238 6986295 YP_002261623.1 CDS VSAL_I0070 NC_011312.1 73060 73374 R transposase complement(73060..73374) Aliivibrio salmonicida LFI1238 6986296 YP_002261624.1 CDS trkA NC_011312.1 74902 76278 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(74902..76278) Aliivibrio salmonicida LFI1238 6989318 YP_002261625.1 CDS rsmB NC_011312.1 76303 77637 R Possible alternative translational start site after codon 18; ribosomal RNA small subunit methyltransferase B complement(76303..77637) Aliivibrio salmonicida LFI1238 6989317 YP_002261626.1 CDS fmt NC_011312.1 77686 78651 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(77686..78651) Aliivibrio salmonicida LFI1238 6989211 YP_002261627.1 CDS def NC_011312.1 78654 79163 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(78654..79163) Aliivibrio salmonicida LFI1238 6988550 YP_002261628.1 CDS VSAL_I0076 NC_011312.1 79281 80342 D cell wall degradation enzyme 79281..80342 Aliivibrio salmonicida LFI1238 6988400 YP_002261629.1 CDS smf NC_011312.1 80351 81460 D Smf protein 80351..81460 Aliivibrio salmonicida LFI1238 6986298 YP_002261630.1 CDS VSAL_I0078 NC_011312.1 81463 81936 D hypothetical protein 81463..81936 Aliivibrio salmonicida LFI1238 6989249 YP_002261631.1 CDS yrdD NC_011312.1 81946 82515 D Similar to Bacillus subtilis DNA topoisomerase 1 TopA UniProt:P39814 (691 aa) fasta scores: E()=2e-10,32.258% id in 124 aa; DNA topoisomerase 81946..82515 Aliivibrio salmonicida LFI1238 6986299 YP_002261632.1 CDS purK NC_011312.1 82555 83673 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(82555..83673) Aliivibrio salmonicida LFI1238 6989439 YP_002261633.1 CDS purE NC_011312.1 83673 84209 R phosphoribosylaminoimidazole carboxylase catalytic subunit complement(83673..84209) Aliivibrio salmonicida LFI1238 6989040 YP_002261634.1 CDS VSAL_I0082 NC_011312.1 84360 84917 D hypothetical protein 84360..84917 Aliivibrio salmonicida LFI1238 6989037 YP_002261635.1 CDS aroE NC_011312.1 84984 85805 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 84984..85805 Aliivibrio salmonicida LFI1238 6986300 YP_002261636.1 CDS VSAL_I0084 NC_011312.1 85879 86064 D Similar to Vibrio fischeri Hypothetical protein UniProt:Q5E1R7 (87 aa) fasta scores: E()=7e-11, 65.000% id in 60 aa; hypothetical protein 85879..86064 Aliivibrio salmonicida LFI1238 6988261 YP_002261637.1 CDS VSAL_I0085 NC_011312.1 86057 86602 R transferase complement(86057..86602) Aliivibrio salmonicida LFI1238 6986301 YP_002261638.1 CDS ilvY NC_011312.1 114812 115696 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(114812..115696) Aliivibrio salmonicida LFI1238 6988086 YP_002261639.1 CDS ilvC NC_011312.1 115825 117309 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 115825..117309 Aliivibrio salmonicida LFI1238 6988713 YP_002261640.1 CDS VSAL_I0088 NC_011312.1 117397 117648 R hypothetical protein complement(117397..117648) Aliivibrio salmonicida LFI1238 6988706 YP_002261641.1 CDS VSAL_I0089 NC_011312.1 117758 120826 R Similar to Escherichia coli Acriflavine resistance protein F AcrF UniProt:P24181 (1034 aa) blastp scores: E()=0e-130; integral membrane component of multidrug efflux system complement(117758..120826) Aliivibrio salmonicida LFI1238 6986303 YP_002261642.1 CDS VSAL_I0090 NC_011312.1 120838 121944 R Similar to Pseudomonas aeruginosa Multidrug transporter membrane fusion protein MexA (PDB 1VF7),evalue=3e-21, identity=(80, 326); multidrug transporter HlyD family complement(120838..121944) Aliivibrio salmonicida LFI1238 6986304 YP_002261643.1 CDS VSAL_I0091 NC_011312.1 121963 122562 R TetR family transcriptional regulator complement(121963..122562) Aliivibrio salmonicida LFI1238 6986305 YP_002261644.1 CDS rep NC_011312.1 122717 124732 D ATP-dependent DNA helicase rep 122717..124732 Aliivibrio salmonicida LFI1238 6986306 YP_002261645.1 CDS VSAL_I0093 NC_011312.1 124833 125240 R cytochrome c complement(124833..125240) Aliivibrio salmonicida LFI1238 6989087 YP_002261646.1 CDS VSAL_I0095 NC_011312.1 128498 130051 D transport protein, extracellular solute-binding protein 128498..130051 Aliivibrio salmonicida LFI1238 6986308 YP_002261647.1 CDS VSAL_I0096 NC_011312.1 130188 131165 D Similar to Bacillus subtilis Oligopeptide transport system permease protein AppB UniProt:P42062 (317 aa) fasta scores: E()=1e-32, 34.161% id in 322 aa; binding-protein-dependent transport system,inner membrane component 130188..131165 Aliivibrio salmonicida LFI1238 6986309 YP_002261648.1 CDS VSAL_I0097 NC_011312.1 131168 132109 D binding-protein-dependent transport system,inner membrane component 131168..132109 Aliivibrio salmonicida LFI1238 6986310 YP_002261649.1 CDS VSAL_I0098 NC_011312.1 132347 133927 D Similar to Bacillus subtilis Glycine betaine transporter OpuD UniProt:P54417 (512 aa) fasta scores: E()=4.2e-65, 41.968% id in 498 aa; transporter BCCT family 132347..133927 Aliivibrio salmonicida LFI1238 6986311 YP_002261650.1 CDS VSAL_I0099 NC_011312.1 134012 134728 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(134012..134728) Aliivibrio salmonicida LFI1238 6986312 YP_002261651.1 CDS VSAL_I0100 NC_011312.1 134738 136618 R cyclic nucleotide binding protein complement(134738..136618) Aliivibrio salmonicida LFI1238 6986313 YP_002261652.1 CDS VSAL_I0101 NC_011312.1 136794 137672 D hypothetical protein 136794..137672 Aliivibrio salmonicida LFI1238 6986314 YP_002261653.1 CDS VSAL_I0102 NC_011312.1 137656 137919 D hypothetical protein 137656..137919 Aliivibrio salmonicida LFI1238 6986315 YP_002261654.1 CDS VSAL_I0103 NC_011312.1 137970 139940 R HTH-type transcriptional regulator complement(137970..139940) Aliivibrio salmonicida LFI1238 6986316 YP_002261655.1 CDS VSAL_I0104 NC_011312.1 140087 140827 R hypothetical protein complement(140087..140827) Aliivibrio salmonicida LFI1238 6986317 YP_002261656.1 CDS VSAL_I0105 NC_011312.1 140840 141886 R hypothetical protein complement(140840..141886) Aliivibrio salmonicida LFI1238 6986318 YP_002261657.1 CDS VSAL_I0106 NC_011312.1 141927 143063 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(141927..143063) Aliivibrio salmonicida LFI1238 6986319 YP_002261658.1 CDS VSAL_I0107 NC_011312.1 143122 143772 R membrane protein complement(143122..143772) Aliivibrio salmonicida LFI1238 6986320 YP_002261659.1 CDS VSAL_I0108 NC_011312.1 143787 144566 R membrane protein complement(143787..144566) Aliivibrio salmonicida LFI1238 6986321 YP_002261660.1 CDS VSAL_I0109 NC_011312.1 144627 144923 R hypothetical protein complement(144627..144923) Aliivibrio salmonicida LFI1238 6986322 YP_002261661.1 CDS VSAL_I0110 NC_011312.1 144926 145288 R hypothetical protein complement(144926..145288) Aliivibrio salmonicida LFI1238 6986323 YP_002261662.1 CDS VSAL_I0111 NC_011312.1 145290 145637 R hypothetical protein complement(145290..145637) Aliivibrio salmonicida LFI1238 6986324 YP_002261663.1 CDS VSAL_I0112 NC_011312.1 145902 146783 D transposase 145902..146783 Aliivibrio salmonicida LFI1238 6986325 YP_002261664.1 CDS VSAL_I0113 NC_011312.1 146904 147218 D transposase 146904..147218 Aliivibrio salmonicida LFI1238 6986326 YP_002261665.1 CDS VSAL_I0114 NC_011312.1 147215 147562 D transposase 147215..147562 Aliivibrio salmonicida LFI1238 6986327 YP_002261666.1 CDS VSAL_I0115 NC_011312.1 147634 149121 D transposase 147634..149121 Aliivibrio salmonicida LFI1238 6986328 YP_002261667.1 CDS VSAL_I0116 NC_011312.1 149312 151027 R hypothetical protein complement(149312..151027) Aliivibrio salmonicida LFI1238 6986329 YP_002261668.1 CDS VSAL_I0117 NC_011312.1 151287 151856 R RNA polymerase sigma factor complement(151287..151856) Aliivibrio salmonicida LFI1238 6986330 YP_002261669.1 CDS VSAL_I0118 NC_011312.1 151960 153300 R protein kinase complement(151960..153300) Aliivibrio salmonicida LFI1238 6986331 YP_002261670.1 CDS VSAL_I0119 NC_011312.1 153609 154199 D hypothetical protein 153609..154199 Aliivibrio salmonicida LFI1238 6986332 YP_002261671.1 CDS gor NC_011312.1 154286 155641 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(154286..155641) Aliivibrio salmonicida LFI1238 6986333 YP_002261672.1 CDS VSAL_I0121 NC_011312.1 155854 156693 R hypothetical protein complement(155854..156693) Aliivibrio salmonicida LFI1238 6988616 YP_002261673.1 CDS prlC NC_011312.1 156846 158888 D oligopeptidase A 156846..158888 Aliivibrio salmonicida LFI1238 6986334 YP_002261674.1 CDS VSAL_I0123 NC_011312.1 158962 160401 R peptidase complement(158962..160401) Aliivibrio salmonicida LFI1238 6989009 YP_002261675.1 CDS cyaY NC_011312.1 160523 160837 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(160523..160837) Aliivibrio salmonicida LFI1238 6986335 YP_002261676.1 CDS lysA NC_011312.1 161114 162367 D diaminopimelate decarboxylase 161114..162367 Aliivibrio salmonicida LFI1238 6988366 YP_002261677.1 CDS dapF NC_011312.1 162449 163279 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 162449..163279 Aliivibrio salmonicida LFI1238 6988769 YP_002261678.1 CDS VSAL_I0127 NC_011312.1 163276 163977 D hypothetical protein 163276..163977 Aliivibrio salmonicida LFI1238 6988392 YP_002261679.1 CDS xerC NC_011312.1 163970 164881 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 163970..164881 Aliivibrio salmonicida LFI1238 6986336 YP_002261680.1 CDS VSAL_I0129 NC_011312.1 165050 165364 D transposase 165050..165364 Aliivibrio salmonicida LFI1238 6989418 YP_002261681.1 CDS VSAL_I0131 NC_011312.1 165725 166915 R transposase complement(165725..166915) Aliivibrio salmonicida LFI1238 6986338 YP_002261682.1 CDS VSAL_I0132 NC_011312.1 167270 167860 D lipoprotein 167270..167860 Aliivibrio salmonicida LFI1238 6986339 YP_002261683.1 CDS VSAL_I0133 NC_011312.1 167877 169328 D hypothetical protein 167877..169328 Aliivibrio salmonicida LFI1238 6986340 YP_002261684.1 CDS VSAL_I0134 NC_011312.1 169900 171447 D Similar to Rhizobium meliloti L-2,4-diaminobutyrate decarboxylase, UniProt:Q9Z3R1 (495 aa) fasta scores: E()=3e-36, 36.034% id in 469 aa. Expression may be regulated by Fur; L-2,4-diaminobutyrate decarboxylase 169900..171447 Aliivibrio salmonicida LFI1238 6986341 YP_002261685.1 CDS iucD NC_011312.1 171464 172792 D Similar to Escherichia coli L-lysine 6-monooxygenase IucD UniProt:P11295 (425 aa) fasta scores: E()=7.3e-46, 33.021% id in 427 aa; siderophore biosynthetis protein 171464..172792 Aliivibrio salmonicida LFI1238 6986342 YP_002261686.1 CDS iucC NC_011312.1 172803 175262 D Similar to Vibrio hollisae Aerobactin synthetase IucC UniProt:Q4H460 (586 aa) fasta scores: E()=3.9e-49,30.100% id in 598 aa. Possible alternative translational start site after codon 56; siderophore biosynthesis protein 172803..175262 Aliivibrio salmonicida LFI1238 6988732 YP_002261687.1 CDS VSAL_I0137 NC_011312.1 175286 177451 D Similar to Pseudomonas aeruginosa Ferripyoverdine receptor precursor FpvA UniProt:P48632 (815 aa) fasta scores: E()=4.5e-83, 36.483% id in 688 aa; TonB-dependent iron-siderophore receptor precursor 175286..177451 Aliivibrio salmonicida LFI1238 6988731 YP_002261688.1 CDS VSAL_I0138 NC_011312.1 177570 178520 D Similar to Escherichia coli Ferrienterobactin-binding periplasmic protein precursor FepB UniProt:P0AEL6 (318 aa) fasta scores: E()=4.8e-05,21.908% id in 283 aa; iron-siderophore ABC transporter periplasmic binding protein 177570..178520 Aliivibrio salmonicida LFI1238 6986343 YP_002261689.1 CDS fepD NC_011312.1 178517 179617 D iron-siderophore ABC transporter membrane permease component 178517..179617 Aliivibrio salmonicida LFI1238 6986344 YP_002261690.1 CDS fecD NC_011312.1 179607 180632 D Similar to Vibrio cholerae Cytoplasmic membrane permease (viuG); id 34.328%; ungapped id 35.276%; E()=5.4e-27; 335 aa overlap; iron-siderophore ABC transporter membrane permease component 179607..180632 Aliivibrio salmonicida LFI1238 6988493 YP_002261691.1 CDS fepC NC_011312.1 180647 181453 D Similar to Vibrio cholerae ATPase (viuC); length=279; id 49.802%; ungapped id 50.000%; E()=7.2e-40; 253 aa overlap; iron-siderophore ABC transporter ATP-binding protein 180647..181453 Aliivibrio salmonicida LFI1238 6988490 YP_002261692.1 CDS VSAL_I0142 NC_011312.1 181578 181892 D transposase 181578..181892 Aliivibrio salmonicida LFI1238 6988492 YP_002261693.1 CDS VSAL_I0143 NC_011312.1 181889 182236 D transposase 181889..182236 Aliivibrio salmonicida LFI1238 6986345 YP_002261694.1 CDS VSAL_I0144 NC_011312.1 182308 183795 D transposase 182308..183795 Aliivibrio salmonicida LFI1238 6986346 YP_002261695.1 CDS rhlB NC_011312.1 185316 186620 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(185316..186620) Aliivibrio salmonicida LFI1238 6988619 YP_002261696.1 CDS trxA NC_011312.1 186733 187059 D thioredoxin 1 186733..187059 Aliivibrio salmonicida LFI1238 6989092 YP_002261697.1 CDS rho NC_011312.1 187298 188557 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 187298..188557 Aliivibrio salmonicida LFI1238 6989339 YP_002261698.1 CDS VSAL_I0149 NC_011312.1 188701 189723 D hypothetical protein 188701..189723 Aliivibrio salmonicida LFI1238 6989094 YP_002261699.1 CDS ubiD NC_011312.1 189820 191661 D 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 189820..191661 Aliivibrio salmonicida LFI1238 6986348 YP_002261700.1 CDS VSAL_I0151 NC_011312.1 191658 191921 D Similar to Equisetum telmateia (Giant horsetail) Ferredoxin-1 UniProt:P00234 (95 aa) fasta scores: E()=2.5e-08, 42.857% id in 84 aa; ferredoxin 191658..191921 Aliivibrio salmonicida LFI1238 6989350 YP_002261701.1 CDS fre NC_011312.1 192020 192730 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 192020..192730 Aliivibrio salmonicida LFI1238 6986349 YP_002261702.1 CDS VSAL_I0155 NC_011312.1 194735 195049 R transposase complement(194735..195049) Aliivibrio salmonicida LFI1238 6986351 YP_002261703.1 CDS VSAL_I0157 NC_011312.1 195363 197342 R membrane associated sulfatase complement(195363..197342) Aliivibrio salmonicida LFI1238 6988339 YP_002261704.1 CDS mutM NC_011312.1 197379 198197 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(197379..198197) Aliivibrio salmonicida LFI1238 6986353 YP_002261705.1 CDS rfaD NC_011312.1 198490 199431 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 198490..199431 Aliivibrio salmonicida LFI1238 6988868 YP_002261706.1 CDS waaL NC_011312.1 199602 200828 D O-antigen ligase WaaL 199602..200828 Aliivibrio salmonicida LFI1238 6988669 YP_002261707.1 CDS rfaF NC_011312.1 200825 201895 D ADP-heptose-LPS heptosyltransferase II 200825..201895 Aliivibrio salmonicida LFI1238 6989408 YP_002261708.1 CDS kdtA NC_011312.1 201889 203151 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 201889..203151 Aliivibrio salmonicida LFI1238 6989088 YP_002261709.1 CDS VSAL_I0163 NC_011312.1 203198 204199 D hypothetical protein 203198..204199 Aliivibrio salmonicida LFI1238 6988736 YP_002261710.1 CDS VSAL_I0164 NC_011312.1 204352 205308 R transposase complement(204352..205308) Aliivibrio salmonicida LFI1238 6986354 YP_002261711.1 CDS VSAL_I0165 NC_011312.1 205561 206664 R Similar to Campylobacter jejuni PseA UniProt:Q939J7 (378 aa) fasta scores: E()=6.6e-39, 36.216% id in 370 aa; pseudaminic acid biosynthesis protein complement(205561..206664) Aliivibrio salmonicida LFI1238 6986355 YP_002261712.1 CDS VSAL_I0167 NC_011312.1 207356 208414 R Similar to Campylobacter coli PtmE UniProt:Q7X521 (220 aa) fasta scores: E()=5.9e-31, 43.439% id in 221 aa; nucleotidyl transferase complement(207356..208414) Aliivibrio salmonicida LFI1238 6988900 YP_002261713.1 CDS VSAL_I0168 NC_011312.1 208430 209074 R acetyltransferase complement(208430..209074) Aliivibrio salmonicida LFI1238 6986357 YP_002261714.1 CDS VSAL_I0169 NC_011312.1 209067 210140 R Similar to Campylobacter coli PtmC UniProt:Q7X523 (334 aa) fasta scores: E()=4.5e-31, 52.113% id in 355 aa; N-acetylneuraminic acid synthase complement(209067..210140) Aliivibrio salmonicida LFI1238 6986358 YP_002261715.1 CDS VSAL_I0170 NC_011312.1 210148 211332 R Similar to Campylobacter coli PtmD UniProt:Q7X522 (391 aa) fasta scores: E()=1.7e-50, 42.010% id in 388 aa; UDP-N-acetylglucosamine 2-epimerase complement(210148..211332) Aliivibrio salmonicida LFI1238 6986359 YP_002261716.1 CDS VSAL_I0171 NC_011312.1 211370 212515 R DegT/DnrJ/EryC1/StrS aminotransferase complement(211370..212515) Aliivibrio salmonicida LFI1238 6986360 YP_002261717.1 CDS VSAL_I0172 NC_011312.1 212539 213729 R polysaccharide biosynthesis protein complement(212539..213729) Aliivibrio salmonicida LFI1238 6986361 YP_002261718.1 CDS VSAL_I0173 NC_011312.1 213847 214968 R hypothetical protein complement(213847..214968) Aliivibrio salmonicida LFI1238 6986362 YP_002261719.1 CDS rffA NC_011312.1 214965 216107 R catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase complement(214965..216107) Aliivibrio salmonicida LFI1238 6986363 YP_002261720.1 CDS wavT NC_011312.1 216890 217729 R glycosyl transferase family protein complement(216890..217729) Aliivibrio salmonicida LFI1238 6989411 YP_002261721.1 CDS rmlC NC_011312.1 217730 218287 R dTDP-4-dehydrorhamnose 3,5-epimerase complement(217730..218287) Aliivibrio salmonicida LFI1238 6989413 YP_002261722.1 CDS rmlA NC_011312.1 219197 220081 R glucose-1-phosphate thymidylyltransferase complement(219197..220081) Aliivibrio salmonicida LFI1238 6989124 YP_002261723.1 CDS rmlB NC_011312.1 220081 221172 R dTDP-D-glucose-4,6-dehydratase complement(220081..221172) Aliivibrio salmonicida LFI1238 6989115 YP_002261724.1 CDS VSAL_I0181 NC_011312.1 221194 223047 R membrane associated sulfatase complement(221194..223047) Aliivibrio salmonicida LFI1238 6989118 YP_002261725.1 CDS wavC NC_011312.1 223080 223784 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(223080..223784) Aliivibrio salmonicida LFI1238 6986364 YP_002261726.1 CDS VSAL_I0183 NC_011312.1 224160 225230 D glycosyl transferase family protein 224160..225230 Aliivibrio salmonicida LFI1238 6989409 YP_002261727.1 CDS waaE NC_011312.1 225230 226012 D glycosyl transferase family protein 225230..226012 Aliivibrio salmonicida LFI1238 6986365 YP_002261728.1 CDS VSAL_I0185 NC_011312.1 226012 227043 D Similar to Rhizobium meliloti lipopolysaccharide core biosynthesis glycosyl transferase LpsD UniProt:Q9R9N0 (343 aa) fasta scores: E()=1e-10, 25.852% id in 352 aa; glycosyl transferase 226012..227043 Aliivibrio salmonicida LFI1238 6989406 YP_002261729.1 CDS coaD NC_011312.1 227036 227524 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 227036..227524 Aliivibrio salmonicida LFI1238 6986366 YP_002261730.1 CDS VSAL_I0187 NC_011312.1 227568 229547 R membrane protein complement(227568..229547) Aliivibrio salmonicida LFI1238 6988340 YP_002261731.1 CDS mutM NC_011312.1 229584 230402 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(229584..230402) Aliivibrio salmonicida LFI1238 6986367 YP_002261732.1 CDS VSAL_I0189 NC_011312.1 230590 231048 R hypothetical protein complement(230590..231048) Aliivibrio salmonicida LFI1238 6988869 YP_002261733.1 CDS rpmG NC_011312.1 231313 231480 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(231313..231480) Aliivibrio salmonicida LFI1238 6986368 YP_002261734.1 CDS rpmB NC_011312.1 231494 231730 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(231494..231730) Aliivibrio salmonicida LFI1238 6989176 YP_002261735.1 CDS radC NC_011312.1 231926 232600 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(231926..232600) Aliivibrio salmonicida LFI1238 6989170 YP_002261736.1 CDS coaBC NC_011312.1 232816 234036 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 232816..234036 Aliivibrio salmonicida LFI1238 6989061 YP_002261737.1 CDS slmA NC_011312.1 234260 234850 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 234260..234850 Aliivibrio salmonicida LFI1238 6988338 YP_002261738.1 CDS htrB NC_011312.1 234906 235847 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 234906..235847 Aliivibrio salmonicida LFI1238 6989246 YP_002261739.1 CDS greB NC_011312.1 235883 236350 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 235883..236350 Aliivibrio salmonicida LFI1238 6988689 YP_002261740.1 CDS VSAL_I0197 NC_011312.1 236541 238877 D Similar to Escherichia coli S1 RNA binding domain (PDB 1SRO), evalue=5e-09 identity=(31, 75). Expression may be regulated by Fur; RNA binding protein 236541..238877 Aliivibrio salmonicida LFI1238 6988624 YP_002261741.1 CDS VSAL_I0198 NC_011312.1 239187 239666 R hypothetical protein complement(239187..239666) Aliivibrio salmonicida LFI1238 6986369 YP_002261742.1 CDS bioH NC_011312.1 239701 240486 R carboxylesterase BioH complement(239701..240486) Aliivibrio salmonicida LFI1238 6986370 YP_002261743.1 CDS VSAL_I0201 NC_011312.1 240896 241777 D transposase 240896..241777 Aliivibrio salmonicida LFI1238 6986371 YP_002261744.1 CDS envZ NC_011312.1 244329 245636 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(244329..245636) Aliivibrio salmonicida LFI1238 6986373 YP_002261745.1 CDS ompR NC_011312.1 245950 246669 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(245950..246669) Aliivibrio salmonicida LFI1238 6988443 YP_002261746.1 CDS VSAL_I0205 NC_011312.1 246879 247619 D Similar to Pseudomonas aeruginosa Partitioning protein ParA UniProt:Q4W1V5 (212 aa) fasta scores: E()=3.2e-05, 28.571% id in 168 aa; partitioning protein ParA 246879..247619 Aliivibrio salmonicida LFI1238 6988930 YP_002261747.1 CDS pyrE NC_011312.1 247781 248290 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(247781..248290) Aliivibrio salmonicida LFI1238 6986374 YP_002261748.1 CDS rph NC_011312.1 248525 249241 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(248525..249241) Aliivibrio salmonicida LFI1238 6989050 YP_002261749.1 CDS VSAL_I0208 NC_011312.1 249413 250276 D hypothetical protein 249413..250276 Aliivibrio salmonicida LFI1238 6989144 YP_002261750.1 CDS VSAL_I0209 NC_011312.1 250359 250787 R phosphate-starvation-inducible E complement(250359..250787) Aliivibrio salmonicida LFI1238 6986375 YP_002261751.1 CDS gmk NC_011312.1 250943 251566 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 250943..251566 Aliivibrio salmonicida LFI1238 6986376 YP_002261752.1 CDS rpoZ NC_011312.1 251679 251951 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 251679..251951 Aliivibrio salmonicida LFI1238 6988614 YP_002261753.1 CDS spoT NC_011312.1 252018 254147 D bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 252018..254147 Aliivibrio salmonicida LFI1238 6989187 YP_002261754.1 CDS VSAL_I0214 NC_011312.1 254992 256479 R transposase complement(254992..256479) Aliivibrio salmonicida LFI1238 6989324 YP_002261755.1 CDS VSAL_I0215 NC_011312.1 256551 256898 R transposase complement(256551..256898) Aliivibrio salmonicida LFI1238 6986377 YP_002261756.1 CDS VSAL_I0216 NC_011312.1 256895 257209 R transposase complement(256895..257209) Aliivibrio salmonicida LFI1238 6986378 YP_002261757.1 CDS hemY NC_011312.1 257294 258475 R protein HemY complement(257294..258475) Aliivibrio salmonicida LFI1238 6986379 YP_002261758.1 CDS hemX NC_011312.1 258472 259686 R Similar to Escherichia coli uroporphyrin-III C-methyltransferase HemX UniProt:P09127 (393 aa) fasta scores: E()=1.5e-36, 32.718% id in 379 aa. Possible alternative translational start site after codon 25; uroporphyrin-III C-methyltransferase HemX complement(258472..259686) Aliivibrio salmonicida LFI1238 6988651 YP_002261759.1 CDS hemD NC_011312.1 259699 260445 R uroporphyrinogen III synthase HemD complement(259699..260445) Aliivibrio salmonicida LFI1238 6988650 YP_002261760.1 CDS hemC NC_011312.1 260447 261382 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(260447..261382) Aliivibrio salmonicida LFI1238 6988643 YP_002261761.1 CDS cyaA NC_011312.1 261640 264150 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 261640..264150 Aliivibrio salmonicida LFI1238 6988642 YP_002261762.1 CDS uvrD NC_011312.1 264252 266456 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 264252..266456 Aliivibrio salmonicida LFI1238 6988364 YP_002261763.1 CDS rarD NC_011312.1 267419 268336 R chloramphenicol-sensitive protein RarD complement(267419..268336) Aliivibrio salmonicida LFI1238 6989368 YP_002261764.1 CDS recQ NC_011312.1 268514 270349 D functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 268514..270349 Aliivibrio salmonicida LFI1238 6989064 YP_002261765.1 CDS VSAL_I0225 NC_011312.1 270353 270643 D hypothetical protein 270353..270643 Aliivibrio salmonicida LFI1238 6989084 YP_002261766.1 CDS VSAL_I0226 NC_011312.1 270782 271447 D hypothetical protein 270782..271447 Aliivibrio salmonicida LFI1238 6986380 YP_002261767.1 CDS polA NC_011312.1 272158 274962 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 272158..274962 Aliivibrio salmonicida LFI1238 6989219 YP_002261768.1 CDS engB NC_011312.1 275687 276361 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(275687..276361) Aliivibrio salmonicida LFI1238 6989258 YP_002261769.1 CDS VSAL_I0229 NC_011312.1 276622 277239 D cytochrome c 276622..277239 Aliivibrio salmonicida LFI1238 6988440 YP_002261770.1 CDS VSAL_I0230 NC_011312.1 277381 278025 D hypothetical protein 277381..278025 Aliivibrio salmonicida LFI1238 6986382 YP_002261771.1 CDS VSAL_I0231 NC_011312.1 278025 278573 D hypothetical protein 278025..278573 Aliivibrio salmonicida LFI1238 6986383 YP_002261772.1 CDS VSAL_I0232 NC_011312.1 278576 279067 D hypothetical protein 278576..279067 Aliivibrio salmonicida LFI1238 6986384 YP_002261773.1 CDS hemN NC_011312.1 279179 280552 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 279179..280552 Aliivibrio salmonicida LFI1238 6986385 YP_002261774.1 CDS VSAL_I0234 NC_011312.1 280769 281083 D transposase 280769..281083 Aliivibrio salmonicida LFI1238 6988649 YP_002261775.1 CDS VSAL_I0235 NC_011312.1 281080 281427 D transposase 281080..281427 Aliivibrio salmonicida LFI1238 6986386 YP_002261776.1 CDS VSAL_I0236 NC_011312.1 281499 282986 D transposase 281499..282986 Aliivibrio salmonicida LFI1238 6986387 YP_002261777.1 CDS VSAL_I0238 NC_011312.1 283303 284334 R Similar to Rhizobium meliloti lipopolysaccharide core biosynthesis glycosyl transferase LpsD UniProt:Q9R9N0 (EMBL:AF193023) (343 aa) fasta scores: E()=1e-10, 25.852% id in 352 aa; glycosyl transferase complement(283303..284334) Aliivibrio salmonicida LFI1238 6988341 YP_002261778.1 CDS waaE NC_011312.1 284334 285116 R glucosyl transferase complement(284334..285116) Aliivibrio salmonicida LFI1238 6986389 YP_002261779.1 CDS VSAL_I0240 NC_011312.1 285116 286237 R lipopolysaccharide core biosynthesis glycosyl transferase protein complement(285116..286237) Aliivibrio salmonicida LFI1238 6989407 YP_002261780.1 CDS wavC NC_011312.1 286562 287266 D catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 286562..287266 Aliivibrio salmonicida LFI1238 6986390 YP_002261781.1 CDS VSAL_I0242 NC_011312.1 287299 289152 D membrane associated sulfatase 287299..289152 Aliivibrio salmonicida LFI1238 6989410 YP_002261782.1 CDS rmlB NC_011312.1 289174 290265 D dTDP-D-glucose-4,6-dehydratase 289174..290265 Aliivibrio salmonicida LFI1238 6986391 YP_002261783.1 CDS rmlA NC_011312.1 290265 291149 D glucose-1-phosphate thymidylyltransferase 290265..291149 Aliivibrio salmonicida LFI1238 6989119 YP_002261784.1 CDS rmlC NC_011312.1 292059 292616 D dTDP-4-dehydrorhamnose 3,5-epimerase 292059..292616 Aliivibrio salmonicida LFI1238 6989125 YP_002261785.1 CDS wavT NC_011312.1 292617 293456 D glycosyl transferase family protein 292617..293456 Aliivibrio salmonicida LFI1238 6989122 YP_002261786.1 CDS rffA NC_011312.1 294239 295381 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 294239..295381 Aliivibrio salmonicida LFI1238 6989412 YP_002261787.1 CDS VSAL_I0250 NC_011312.1 295378 296499 D hypothetical protein 295378..296499 Aliivibrio salmonicida LFI1238 6989091 YP_002261788.1 CDS VSAL_I0251 NC_011312.1 296617 297807 D capsular polysaccharide biosynthesis protein 296617..297807 Aliivibrio salmonicida LFI1238 6986392 YP_002261789.1 CDS VSAL_I0252 NC_011312.1 297831 298976 D DegT/DnrJ/EryC1/StrS aminotransferase 297831..298976 Aliivibrio salmonicida LFI1238 6986393 YP_002261790.1 CDS VSAL_I0253 NC_011312.1 299014 300198 D Similar to Campylobacter coli PtmD UniProt:Q7X522 (391 aa) fasta scores: E()=1.7e-50, 42.010% id in 388 aa; UDP-N-acetylglucosamine 2-epimerase 299014..300198 Aliivibrio salmonicida LFI1238 6986394 YP_002261791.1 CDS VSAL_I0254 NC_011312.1 300206 301279 D Similar to Campylobacter coli PtmC UniProt:Q7X523 (334 aa) fasta scores: E()=4.5e-31, 52.113% id in 355 aa; N-acetylneuraminic acid synthase 300206..301279 Aliivibrio salmonicida LFI1238 6986395 YP_002261792.1 CDS VSAL_I0255 NC_011312.1 301272 301916 D acetyltransferase 301272..301916 Aliivibrio salmonicida LFI1238 6986396 YP_002261793.1 CDS VSAL_I0256 NC_011312.1 301932 302990 D Similar to Campylobacter coli PtmE UniProt:Q7X521 (220 aa) fasta scores: E()=5.9e-31, 43.439% id in 221 aa; nucleotidyl transferase 301932..302990 Aliivibrio salmonicida LFI1238 6986397 YP_002261794.1 CDS VSAL_I0258 NC_011312.1 303682 304785 D Similar to Campylobacter jejuni PseA UniProt:Q939J7 (378 aa) fasta scores: E()=3.7e-39, 36.216% id in 370 aa; outer membrane protein 303682..304785 Aliivibrio salmonicida LFI1238 6986399 YP_002261795.1 CDS VSAL_I0259 NC_011312.1 305038 305994 D transposase 305038..305994 Aliivibrio salmonicida LFI1238 6986400 YP_002261796.1 CDS VSAL_I0260 NC_011312.1 306147 307148 R hypothetical protein complement(306147..307148) Aliivibrio salmonicida LFI1238 6986401 YP_002261797.1 CDS VSAL_I0261 NC_011312.1 307195 308457 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(307195..308457) Aliivibrio salmonicida LFI1238 6986402 YP_002261798.1 CDS VSAL_I0262 NC_011312.1 308451 309521 R ADP-heptose-LPS heptosyltransferase II complement(308451..309521) Aliivibrio salmonicida LFI1238 6986403 YP_002261799.1 CDS VSAL_I0263 NC_011312.1 309518 310744 R Similar to Vibrio cholerae O-antigen ligase WaaL UniProt:Q8RJ54 (399 aa) fasta scores: E()=7e-14, 27.094% id in 406 aa; O-antigen ligase WaaL complement(309518..310744) Aliivibrio salmonicida LFI1238 6986404 YP_002261800.1 CDS rfaD NC_011312.1 310915 311856 R catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase complement(310915..311856) Aliivibrio salmonicida LFI1238 6986405 YP_002261801.1 CDS VSAL_I0265 NC_011312.1 312237 313691 D metallo-beta-lactamase 312237..313691 Aliivibrio salmonicida LFI1238 6988670 YP_002261802.1 CDS VSAL_I0266 NC_011312.1 313868 314215 D hypothetical protein 313868..314215 Aliivibrio salmonicida LFI1238 6986406 YP_002261803.1 CDS VSAL_I0267 NC_011312.1 314332 314976 D TetR family transcriptional regulator 314332..314976 Aliivibrio salmonicida LFI1238 6986407 YP_002261804.1 CDS VSAL_I0268 NC_011312.1 315135 316286 D hypothetical protein 315135..316286 Aliivibrio salmonicida LFI1238 6986408 YP_002261805.1 CDS VSAL_I0269 NC_011312.1 316286 317005 D hypothetical protein 316286..317005 Aliivibrio salmonicida LFI1238 6986409 YP_002261806.1 CDS VSAL_I0270 NC_011312.1 317174 317698 D lipoprotein 317174..317698 Aliivibrio salmonicida LFI1238 6986410 YP_002261807.1 CDS VSAL_I0271 NC_011312.1 317676 318617 D hypothetical protein 317676..318617 Aliivibrio salmonicida LFI1238 6986411 YP_002261808.1 CDS VSAL_I0272 NC_011312.1 318954 321161 R outer membrane protein complement(318954..321161) Aliivibrio salmonicida LFI1238 6986412 YP_002261809.1 CDS VSAL_I0273 NC_011312.1 321164 321928 R hypothetical protein complement(321164..321928) Aliivibrio salmonicida LFI1238 6986413 YP_002261810.1 CDS VSAL_I0274 NC_011312.1 321935 322600 R lipoprotein complement(321935..322600) Aliivibrio salmonicida LFI1238 6986414 YP_002261811.1 CDS VSAL_I0275 NC_011312.1 322685 322942 R membrane protein complement(322685..322942) Aliivibrio salmonicida LFI1238 6986415 YP_002261812.1 CDS VSAL_I0276 NC_011312.1 323139 324506 D hypothetical protein 323139..324506 Aliivibrio salmonicida LFI1238 6986416 YP_002261813.1 CDS VSAL_I0277 NC_011312.1 324575 327184 D polysaccharide export periplasmic protein 324575..327184 Aliivibrio salmonicida LFI1238 6986417 YP_002261814.1 CDS wzz NC_011312.1 327417 328394 D O-antigen length determinant protein 327417..328394 Aliivibrio salmonicida LFI1238 6986418 YP_002261815.1 CDS VSAL_I0279 NC_011312.1 328784 329098 D transposase 328784..329098 Aliivibrio salmonicida LFI1238 6989417 YP_002261816.1 CDS VSAL_I0280 NC_011312.1 329095 329442 D transposase 329095..329442 Aliivibrio salmonicida LFI1238 6986419 YP_002261817.1 CDS VSAL_I0282 NC_011312.1 331420 331788 R hypothetical protein complement(331420..331788) Aliivibrio salmonicida LFI1238 6986421 YP_002261818.1 CDS tpiA NC_011312.1 332081 332851 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(332081..332851) Aliivibrio salmonicida LFI1238 6986422 YP_002261819.1 CDS hpcD NC_011312.1 333134 333484 D 5-carboxymethyl-2-hydroxymuconate isomerase 333134..333484 Aliivibrio salmonicida LFI1238 6989316 YP_002261820.1 CDS VSAL_I0286 NC_011312.1 333689 334570 D transposase 333689..334570 Aliivibrio salmonicida LFI1238 6986423 YP_002261821.1 CDS glpX NC_011312.1 335317 336324 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(335317..336324) Aliivibrio salmonicida LFI1238 6986424 YP_002261822.1 CDS VSAL_I0288 NC_011312.1 336692 336934 D hypothetical protein 336692..336934 Aliivibrio salmonicida LFI1238 6988603 YP_002261823.1 CDS VSAL_I0289 NC_011312.1 337220 337534 D transposase 337220..337534 Aliivibrio salmonicida LFI1238 6986425 YP_002261824.1 CDS VSAL_I0290 NC_011312.1 337531 337878 D transposase 337531..337878 Aliivibrio salmonicida LFI1238 6986426 YP_002261825.1 CDS VSAL_I0291 NC_011312.1 337950 339437 D transposase 337950..339437 Aliivibrio salmonicida LFI1238 6986427 YP_002261826.1 CDS rraA NC_011312.1 339695 340192 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(339695..340192) Aliivibrio salmonicida LFI1238 6986428 YP_002261827.1 CDS menA NC_011312.1 340286 341194 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(340286..341194) Aliivibrio salmonicida LFI1238 6989208 YP_002261828.1 CDS cfxP NC_011312.1 341282 342151 R phosphoribulokinase complement(341282..342151) Aliivibrio salmonicida LFI1238 6988781 YP_002261829.1 CDS VSAL_I0295 NC_011312.1 342253 342495 R hypothetical protein complement(342253..342495) Aliivibrio salmonicida LFI1238 6988315 YP_002261830.1 CDS VSAL_I0296 NC_011312.1 342530 343498 R hydrolase complement(342530..343498) Aliivibrio salmonicida LFI1238 6986429 YP_002261831.1 CDS VSAL_I0297 NC_011312.1 343518 344000 R hypothetical protein complement(343518..344000) Aliivibrio salmonicida LFI1238 6986430 YP_002261832.1 CDS VSAL_I0298 NC_011312.1 343984 345915 R ABC transporter ATP-binding protein complement(343984..345915) Aliivibrio salmonicida LFI1238 6986431 YP_002261833.1 CDS kefG NC_011312.1 346064 346636 D required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 346064..346636 Aliivibrio salmonicida LFI1238 6986432 YP_002261834.1 CDS kefB NC_011312.1 346636 348426 D involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 346636..348426 Aliivibrio salmonicida LFI1238 6988738 YP_002261835.1 CDS VSAL_I0301 NC_011312.1 348447 348641 D hypothetical protein 348447..348641 Aliivibrio salmonicida LFI1238 6988737 YP_002261836.1 CDS slyD NC_011312.1 348699 349289 D FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 348699..349289 Aliivibrio salmonicida LFI1238 6986433 YP_002261837.1 CDS VSAL_I0303 NC_011312.1 349477 349701 R Similar to Escherichia coli Protein SlyX UniProt:P0A8R4 (72 aa) fasta scores: E()=1.4e-06, 37.313% id in 67 aa; hypothetical protein complement(349477..349701) Aliivibrio salmonicida LFI1238 6989248 YP_002261838.1 CDS VSAL_I0304 NC_011312.1 349698 350714 R lipoprotein complement(349698..350714) Aliivibrio salmonicida LFI1238 6986434 YP_002261839.1 CDS fkpA NC_011312.1 350844 351638 D FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 350844..351638 Aliivibrio salmonicida LFI1238 6986435 YP_002261840.1 CDS VSAL_I0306 NC_011312.1 351827 352540 D DNA-binding protein 351827..352540 Aliivibrio salmonicida LFI1238 6988500 YP_002261841.1 CDS dsrE NC_011312.1 352537 352929 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 352537..352929 Aliivibrio salmonicida LFI1238 6986436 YP_002261842.1 CDS dsrF NC_011312.1 352959 353315 D intracellular sulfur oxidation protein DsrF 352959..353315 Aliivibrio salmonicida LFI1238 6988428 YP_002261843.1 CDS VSAL_I0309 NC_011312.1 353325 353612 D hypothetical protein 353325..353612 Aliivibrio salmonicida LFI1238 6988429 YP_002261844.1 CDS rpsL NC_011312.1 353778 354152 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 353778..354152 Aliivibrio salmonicida LFI1238 6986437 YP_002261845.1 CDS rpsG NC_011312.1 354263 354733 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 354263..354733 Aliivibrio salmonicida LFI1238 6989199 YP_002261846.1 CDS fusA NC_011312.1 354867 356954 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 354867..356954 Aliivibrio salmonicida LFI1238 6989194 YP_002261847.1 CDS tuf NC_011312.1 357073 358257 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 357073..358257 Aliivibrio salmonicida LFI1238 6988577 YP_002261848.1 CDS VSAL_I0315 NC_011312.1 359387 359698 D transposase 359387..359698 Aliivibrio salmonicida LFI1238 6989342 YP_002261849.1 CDS VSAL_I0316 NC_011312.1 359695 360042 D transposase 359695..360042 Aliivibrio salmonicida LFI1238 6986438 YP_002261850.1 CDS VSAL_I0317 NC_011312.1 360130 361011 R transposase complement(360130..361011) Aliivibrio salmonicida LFI1238 6986439 YP_002261851.1 CDS rpsJ NC_011312.1 363557 363868 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 363557..363868 Aliivibrio salmonicida LFI1238 6986441 YP_002261852.1 CDS rplC NC_011312.1 363881 364510 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 363881..364510 Aliivibrio salmonicida LFI1238 6989197 YP_002261853.1 CDS rplD NC_011312.1 364528 365130 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 364528..365130 Aliivibrio salmonicida LFI1238 6989148 YP_002261854.1 CDS rplW NC_011312.1 365127 365429 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 365127..365429 Aliivibrio salmonicida LFI1238 6989149 YP_002261855.1 CDS rplB NC_011312.1 365445 366269 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 365445..366269 Aliivibrio salmonicida LFI1238 6989166 YP_002261856.1 CDS rpsS NC_011312.1 366289 366567 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 366289..366567 Aliivibrio salmonicida LFI1238 6989147 YP_002261857.1 CDS rplV NC_011312.1 366578 366910 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 366578..366910 Aliivibrio salmonicida LFI1238 6989206 YP_002261858.1 CDS rpsC NC_011312.1 366930 367628 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 366930..367628 Aliivibrio salmonicida LFI1238 6989165 YP_002261859.1 CDS rplP NC_011312.1 367640 368050 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 367640..368050 Aliivibrio salmonicida LFI1238 6989190 YP_002261860.1 CDS rpmC NC_011312.1 368050 368241 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 368050..368241 Aliivibrio salmonicida LFI1238 6989159 YP_002261861.1 CDS rpsQ NC_011312.1 368241 368495 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 368241..368495 Aliivibrio salmonicida LFI1238 6989171 YP_002261862.1 CDS rplN NC_011312.1 368658 369029 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 368658..369029 Aliivibrio salmonicida LFI1238 6989204 YP_002261863.1 CDS rplX NC_011312.1 369040 369357 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 369040..369357 Aliivibrio salmonicida LFI1238 6989157 YP_002261864.1 CDS rplE NC_011312.1 369385 369924 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 369385..369924 Aliivibrio salmonicida LFI1238 6989167 YP_002261865.1 CDS rpsN NC_011312.1 369942 370247 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 369942..370247 Aliivibrio salmonicida LFI1238 6989150 YP_002261866.1 CDS rpsH NC_011312.1 370277 370669 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 370277..370669 Aliivibrio salmonicida LFI1238 6989201 YP_002261867.1 CDS rplF NC_011312.1 370682 371215 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 370682..371215 Aliivibrio salmonicida LFI1238 6989195 YP_002261868.1 CDS rplR NC_011312.1 371225 371578 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 371225..371578 Aliivibrio salmonicida LFI1238 6989151 YP_002261869.1 CDS rpsE NC_011312.1 371593 372093 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 371593..372093 Aliivibrio salmonicida LFI1238 6989161 YP_002261870.1 CDS rpmD NC_011312.1 372099 372278 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 372099..372278 Aliivibrio salmonicida LFI1238 6989192 YP_002261871.1 CDS rplO NC_011312.1 372285 372719 D late assembly protein; 50S ribosomal protein L15 372285..372719 Aliivibrio salmonicida LFI1238 6989172 YP_002261872.1 CDS secY NC_011312.1 372740 374071 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 372740..374071 Aliivibrio salmonicida LFI1238 6989158 YP_002261873.1 CDS rpsM NC_011312.1 374362 374718 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 374362..374718 Aliivibrio salmonicida LFI1238 6988092 YP_002261874.1 CDS rpsK NC_011312.1 374740 375129 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 374740..375129 Aliivibrio salmonicida LFI1238 6989200 YP_002261875.1 CDS rpsD NC_011312.1 375161 375781 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 375161..375781 Aliivibrio salmonicida LFI1238 6989198 YP_002261876.1 CDS rpoA NC_011312.1 375805 376794 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 375805..376794 Aliivibrio salmonicida LFI1238 6989191 YP_002261877.1 CDS rplQ NC_011312.1 376831 377211 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 376831..377211 Aliivibrio salmonicida LFI1238 6989179 YP_002261878.1 CDS fbp NC_011312.1 377275 378285 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(377275..378285) Aliivibrio salmonicida LFI1238 6989160 YP_002261879.1 CDS mpl NC_011312.1 378499 379860 D UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelat ligase 378499..379860 Aliivibrio salmonicida LFI1238 6988481 YP_002261880.1 CDS VSAL_I0348 NC_011312.1 379862 380491 D aromatic acid decarboxylase 379862..380491 Aliivibrio salmonicida LFI1238 6988825 YP_002261881.1 CDS tbpA NC_011312.1 380696 381712 D part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 380696..381712 Aliivibrio salmonicida LFI1238 6988093 YP_002261882.1 CDS thiP NC_011312.1 381775 383397 D permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 381775..383397 Aliivibrio salmonicida LFI1238 6989276 YP_002261883.1 CDS thiQ NC_011312.1 383397 384071 D thiamine transport ATP-binding protein ThiQ 383397..384071 Aliivibrio salmonicida LFI1238 6989289 YP_002261884.1 CDS rapA NC_011312.1 384295 387204 D transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 384295..387204 Aliivibrio salmonicida LFI1238 6989290 YP_002261885.1 CDS rluA NC_011312.1 387207 387941 D ribosomal large subunit pseudouridine synthase A 387207..387941 Aliivibrio salmonicida LFI1238 6989063 YP_002261886.1 CDS uspF NC_011312.1 388002 388439 R universal stress protein F complement(388002..388439) Aliivibrio salmonicida LFI1238 6989108 YP_002261887.1 CDS VSAL_I0355 NC_011312.1 388495 391074 R integral membrane transport protein complement(388495..391074) Aliivibrio salmonicida LFI1238 6989363 YP_002261888.1 CDS VSAL_I0356 NC_011312.1 391308 392282 R hypothetical protein complement(391308..392282) Aliivibrio salmonicida LFI1238 6986443 YP_002261889.1 CDS argR NC_011312.1 394047 394517 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(394047..394517) Aliivibrio salmonicida LFI1238 6986445 YP_002261890.1 CDS mdh NC_011312.1 394789 395724 D oxidizes malate to oxaloacetate; malate dehydrogenase 394789..395724 Aliivibrio salmonicida LFI1238 6988256 YP_002261891.1 CDS ispB NC_011312.1 395817 396788 R octaprenyl-diphosphate synthase complement(395817..396788) Aliivibrio salmonicida LFI1238 6988780 YP_002261892.1 CDS rplU NC_011312.1 397065 397376 D 50S ribosomal protein L21 397065..397376 Aliivibrio salmonicida LFI1238 6988724 YP_002261893.1 CDS rpmA NC_011312.1 397394 397651 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 397394..397651 Aliivibrio salmonicida LFI1238 6989164 YP_002261894.1 CDS obgE NC_011312.1 397929 399107 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 397929..399107 Aliivibrio salmonicida LFI1238 6989169 YP_002261895.1 CDS VSAL_I0364 NC_011312.1 399220 399999 D membrane protein 399220..399999 Aliivibrio salmonicida LFI1238 6986446 YP_002261896.1 CDS VSAL_I0365 NC_011312.1 399999 400490 D membrane protein 399999..400490 Aliivibrio salmonicida LFI1238 6986447 YP_002261897.1 CDS folA NC_011312.1 400556 401077 D Expression may be regulated by Fur; dihydrofolate reductase type 3 400556..401077 Aliivibrio salmonicida LFI1238 6986448 YP_002261898.1 CDS apaH NC_011312.1 401288 402109 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(401288..402109) Aliivibrio salmonicida LFI1238 6988552 YP_002261899.1 CDS ksgA NC_011312.1 402206 403039 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(402206..403039) Aliivibrio salmonicida LFI1238 6988241 YP_002261900.1 CDS pdxA NC_011312.1 403036 404025 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(403036..404025) Aliivibrio salmonicida LFI1238 6988739 YP_002261901.1 CDS surA NC_011312.1 404018 405328 R chaperone SurA precursor complement(404018..405328) Aliivibrio salmonicida LFI1238 6988953 YP_002261902.1 CDS imp NC_011312.1 405399 407753 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(405399..407753) Aliivibrio salmonicida LFI1238 6989269 YP_002261903.1 CDS djlA NC_011312.1 407960 408811 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 407960..408811 Aliivibrio salmonicida LFI1238 6988715 YP_002261904.1 CDS VSAL_I0373 NC_011312.1 408841 409680 R hypothetical protein complement(408841..409680) Aliivibrio salmonicida LFI1238 6988409 YP_002261905.1 CDS leuD NC_011312.1 409804 410406 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(409804..410406) Aliivibrio salmonicida LFI1238 6986449 YP_002261906.1 CDS leuC NC_011312.1 410418 411833 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(410418..411833) Aliivibrio salmonicida LFI1238 6988746 YP_002261907.1 CDS leuB NC_011312.1 411849 412940 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(411849..412940) Aliivibrio salmonicida LFI1238 6988745 YP_002261908.1 CDS leuA NC_011312.1 413018 414565 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(413018..414565) Aliivibrio salmonicida LFI1238 6988744 YP_002261909.1 CDS VSAL_I0379 NC_011312.1 415681 417000 D hypothetical protein 415681..417000 Aliivibrio salmonicida LFI1238 6986450 YP_002261910.1 CDS VSAL_I0380 NC_011312.1 416997 420101 D integral membrane protein, AcrB/AcrD/AcrF family 416997..420101 Aliivibrio salmonicida LFI1238 6986451 YP_002261911.1 CDS VSAL_I0381 NC_011312.1 420124 421125 R 130 amino acid residues longer than the V.fischeri homologue; hypothetical protein complement(420124..421125) Aliivibrio salmonicida LFI1238 6986452 YP_002261912.1 CDS dnaB NC_011312.1 421307 422704 D unwinds double stranded DNA; replicative DNA helicase 421307..422704 Aliivibrio salmonicida LFI1238 6986453 YP_002261913.1 CDS alr NC_011312.1 422726 423802 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 422726..423802 Aliivibrio salmonicida LFI1238 6988412 YP_002261914.1 CDS VSAL_I0384 NC_011312.1 423817 425037 D hypothetical protein 423817..425037 Aliivibrio salmonicida LFI1238 6988231 YP_002261915.1 CDS pgi NC_011312.1 425233 426885 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 425233..426885 Aliivibrio salmonicida LFI1238 6986454 YP_002261916.1 CDS VSAL_I0386 NC_011312.1 426981 427475 R chemotaxis protein complement(426981..427475) Aliivibrio salmonicida LFI1238 6988964 YP_002261917.1 CDS zur NC_011312.1 427496 427945 R zinc uptake regulation protein complement(427496..427945) Aliivibrio salmonicida LFI1238 6986455 YP_002261918.1 CDS VSAL_I0388 NC_011312.1 428519 428800 D phage protein 428519..428800 Aliivibrio salmonicida LFI1238 6989444 YP_002261919.1 CDS VSAL_I0389 NC_011312.1 428844 429683 R Similar to central part of Vibrio parahaemolyticus (Q8L0W3) Hypothetical protein (Fragment); phage protein complement(428844..429683) Aliivibrio salmonicida LFI1238 6986456 YP_002261920.1 CDS VSAL_I0390 NC_011312.1 429880 430272 D phage protein 429880..430272 Aliivibrio salmonicida LFI1238 6986457 YP_002261921.1 CDS VSAL_I0391 NC_011312.1 430429 431454 D ADP-ribose binding protein 430429..431454 Aliivibrio salmonicida LFI1238 6986458 YP_002261922.1 CDS VSAL_I0392 NC_011312.1 431463 431678 R phage protein complement(431463..431678) Aliivibrio salmonicida LFI1238 6986459 YP_002261923.1 CDS VSAL_I0393 NC_011312.1 431804 432226 D transposase 431804..432226 Aliivibrio salmonicida LFI1238 6986460 YP_002261924.1 CDS VSAL_I0394 NC_011312.1 432244 432810 D transposase 432244..432810 Aliivibrio salmonicida LFI1238 6986461 YP_002261925.1 CDS VSAL_I0396 NC_011312.1 433433 434509 R Weakly similar to Bacteriophage BFK20 ORF43 UniProt:Q3V5F2 (982 aa) fasta scores: E()=1.5e-11, 33.803% id in 213 aa; phage protein complement(433433..434509) Aliivibrio salmonicida LFI1238 6986463 YP_002261926.1 CDS VSAL_I0397 NC_011312.1 434540 435601 R Similar to Escherichia coli Shufflon-specific DNA recombinase rci UniProt:P16470 (384 aa) fasta scores: E()=1e-14, 33.065% id in 248 aa; shufflon-specific DNA recombinase complement(434540..435601) Aliivibrio salmonicida LFI1238 6986464 YP_002261927.1 CDS VSAL_I0398 NC_011312.1 435736 436806 R Similar to Escherichia coli Shufflon-specific DNA recombinase rci UniProt:P10487 (384 aa) fasta scores: E()=1.3e-11, 27.211% id in 294 aa; shufflon-specific DNA recombinase complement(435736..436806) Aliivibrio salmonicida LFI1238 6986465 YP_002261928.1 CDS dusA NC_011312.1 437014 438030 D tRNA-dihydrouridine synthase A 437014..438030 Aliivibrio salmonicida LFI1238 6986466 YP_002261929.1 CDS VSAL_I0400 NC_011312.1 438149 438847 D hypothetical protein 438149..438847 Aliivibrio salmonicida LFI1238 6988431 YP_002261930.1 CDS VSAL_I0401 NC_011312.1 438951 439223 D Alternative start at codon 15; hypothetical protein 438951..439223 Aliivibrio salmonicida LFI1238 6986467 YP_002261931.1 CDS cysJ NC_011312.1 439340 441181 D sulfite reductase [NADPH] flavoprotein alpha-component 439340..441181 Aliivibrio salmonicida LFI1238 6986468 YP_002261932.1 CDS cysI NC_011312.1 441181 442911 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 441181..442911 Aliivibrio salmonicida LFI1238 6988378 YP_002261933.1 CDS cysH NC_011312.1 442904 443665 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 442904..443665 Aliivibrio salmonicida LFI1238 6988377 YP_002261934.1 CDS VSAL_I0405 NC_011312.1 443742 444215 R Expression may be regulated by Fur; hypothetical protein complement(443742..444215) Aliivibrio salmonicida LFI1238 6988376 YP_002261935.1 CDS fklB NC_011312.1 444332 444952 R FKBP-type peptidyl-prolyl cis-trans isomerase complement(444332..444952) Aliivibrio salmonicida LFI1238 6986469 YP_002261936.1 CDS VSAL_I0407 NC_011312.1 445092 445754 D opacity-associated protein A 445092..445754 Aliivibrio salmonicida LFI1238 6988499 YP_002261937.1 CDS VSAL_I0408 NC_011312.1 445766 446635 R integral membrane protein complement(445766..446635) Aliivibrio salmonicida LFI1238 6986470 YP_002261938.1 CDS VSAL_I0409 NC_011312.1 446635 447087 R acetyltransferase complement(446635..447087) Aliivibrio salmonicida LFI1238 6986471 YP_002261939.1 CDS VSAL_I0410 NC_011312.1 447153 447725 R DNA-binding protein complement(447153..447725) Aliivibrio salmonicida LFI1238 6986472 YP_002261940.1 CDS VSAL_I0411 NC_011312.1 447735 449507 R hemolysin complement(447735..449507) Aliivibrio salmonicida LFI1238 6986473 YP_002261941.1 CDS VSAL_I0412 NC_011312.1 449511 449969 R membrane protein complement(449511..449969) Aliivibrio salmonicida LFI1238 6986474 YP_002261942.1 CDS VSAL_I0413 NC_011312.1 450040 450465 R hypothetical protein complement(450040..450465) Aliivibrio salmonicida LFI1238 6986475 YP_002261943.1 CDS VSAL_I0414 NC_011312.1 450478 451224 R hypothetical protein complement(450478..451224) Aliivibrio salmonicida LFI1238 6986476 YP_002261944.1 CDS VSAL_I0415 NC_011312.1 451224 451832 R hypothetical protein complement(451224..451832) Aliivibrio salmonicida LFI1238 6986477 YP_002261945.1 CDS VSAL_I0416 NC_011312.1 451784 452914 R hypothetical protein complement(451784..452914) Aliivibrio salmonicida LFI1238 6986478 YP_002261946.1 CDS VSAL_I0417 NC_011312.1 452914 453504 R membrane protein complement(452914..453504) Aliivibrio salmonicida LFI1238 6986479 YP_002261947.1 CDS VSAL_I0418 NC_011312.1 453631 454044 D membrane protein 453631..454044 Aliivibrio salmonicida LFI1238 6986480 YP_002261948.1 CDS cpdB NC_011312.1 454084 456066 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein complement(454084..456066) Aliivibrio salmonicida LFI1238 6986481 YP_002261949.1 CDS cysD NC_011312.1 456434 457342 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 456434..457342 Aliivibrio salmonicida LFI1238 6988346 YP_002261950.1 CDS cysN NC_011312.1 457371 458807 D may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 457371..458807 Aliivibrio salmonicida LFI1238 6988373 YP_002261951.1 CDS VSAL_I0422 NC_011312.1 458830 460557 D ion transporter superfamily protein 458830..460557 Aliivibrio salmonicida LFI1238 6988380 YP_002261952.1 CDS cysC NC_011312.1 460572 461204 D converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 460572..461204 Aliivibrio salmonicida LFI1238 6986482 YP_002261953.1 CDS VSAL_I0424 NC_011312.1 461248 462144 R hypothetical protein complement(461248..462144) Aliivibrio salmonicida LFI1238 6988372 YP_002261954.1 CDS VSAL_I0425 NC_011312.1 462468 462953 R hypothetical protein complement(462468..462953) Aliivibrio salmonicida LFI1238 6986483 YP_002261955.1 CDS VSAL_I0426 NC_011312.1 462963 464222 R permease complement(462963..464222) Aliivibrio salmonicida LFI1238 6986484 YP_002261956.1 CDS VSAL_I0427 NC_011312.1 464216 464905 R ABC transporter ATP-binding protein complement(464216..464905) Aliivibrio salmonicida LFI1238 6986485 YP_002261957.1 CDS VSAL_I0428 NC_011312.1 464942 465583 R hypothetical protein complement(464942..465583) Aliivibrio salmonicida LFI1238 6986486 YP_002261958.1 CDS VSAL_I0429 NC_011312.1 465635 465925 R membrane protein complement(465635..465925) Aliivibrio salmonicida LFI1238 6986487 YP_002261959.1 CDS VSAL_I0430 NC_011312.1 465991 466542 R hypothetical protein complement(465991..466542) Aliivibrio salmonicida LFI1238 6986488 YP_002261960.1 CDS VSAL_I0431 NC_011312.1 466791 467000 D Expression may be stress-induced; hypothetical protein 466791..467000 Aliivibrio salmonicida LFI1238 6986489 YP_002261961.1 CDS msrA NC_011312.1 467069 467719 R peptide methionine sulfoxide reductase MSRA complement(467069..467719) Aliivibrio salmonicida LFI1238 6986490 YP_002261962.1 CDS VSAL_I0433 NC_011312.1 467761 469482 D surface antigen protein 467761..469482 Aliivibrio salmonicida LFI1238 6988852 YP_002261963.1 CDS VSAL_I0434 NC_011312.1 469479 473276 D Similar to Vibrio fischeri Hypothetical outer membrane protein UniProt:Q5E818 (1266 aa) fasta scores: E()=0, 72.874% id in 1176 aa; hypothetical protein 469479..473276 Aliivibrio salmonicida LFI1238 6986491 YP_002261964.1 CDS VSAL_I0435 NC_011312.1 484735 485046 D transposase 484735..485046 Aliivibrio salmonicida LFI1238 6988102 YP_002261965.1 CDS VSAL_I0436 NC_011312.1 485043 485390 D transposase 485043..485390 Aliivibrio salmonicida LFI1238 6986493 YP_002261966.1 CDS VSAL_I0437 NC_011312.1 485462 486949 D transposase 485462..486949 Aliivibrio salmonicida LFI1238 6986494 YP_002261967.1 CDS VSAL_I0439 NC_011312.1 488216 488527 D transposase 488216..488527 Aliivibrio salmonicida LFI1238 6986496 YP_002261968.1 CDS VSAL_I0440 NC_011312.1 488524 489393 D CDS contanins a rare Leucine start codon (TTA); transposase 488524..489393 Aliivibrio salmonicida LFI1238 6986497 YP_002261969.1 CDS VSAL_I0441 NC_011312.1 489668 490945 R sodium/proton antiporter complement(489668..490945) Aliivibrio salmonicida LFI1238 6986498 YP_002261970.1 CDS metH NC_011312.1 491126 494806 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 491126..494806 Aliivibrio salmonicida LFI1238 6986499 YP_002261971.1 CDS VSAL_I0444 NC_011312.1 495249 496130 R transposase complement(495249..496130) Aliivibrio salmonicida LFI1238 6988770 YP_002261972.1 CDS VSAL_I0445 NC_011312.1 497687 498796 D aminotransferase class-V 497687..498796 Aliivibrio salmonicida LFI1238 6988103 YP_002261973.1 CDS VSAL_I0446 NC_011312.1 498845 500602 R O-antigen polymerase complement(498845..500602) Aliivibrio salmonicida LFI1238 6986501 YP_002261974.1 CDS uvrA NC_011312.1 500682 503510 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(500682..503510) Aliivibrio salmonicida LFI1238 6986502 YP_002261975.1 CDS galU NC_011312.1 503682 504551 R UTP-glucose-1-phosphate uridylyltransferase complement(503682..504551) Aliivibrio salmonicida LFI1238 6989365 YP_002261976.1 CDS VSAL_I0449 NC_011312.1 504688 505092 R hypothetical protein complement(504688..505092) Aliivibrio salmonicida LFI1238 6988582 YP_002261977.1 CDS VSAL_I0450 NC_011312.1 505085 506215 R glycosyl transferase family protein complement(505085..506215) Aliivibrio salmonicida LFI1238 6986503 YP_002261978.1 CDS VSAL_I0451 NC_011312.1 506219 507424 R glycosyl transferase family protein complement(506219..507424) Aliivibrio salmonicida LFI1238 6986504 YP_002261979.1 CDS VSAL_I0452 NC_011312.1 507421 508419 R glycosyl transferase family protein complement(507421..508419) Aliivibrio salmonicida LFI1238 6986505 YP_002261980.1 CDS VSAL_I0453 NC_011312.1 508412 509794 R membrane protein complement(508412..509794) Aliivibrio salmonicida LFI1238 6986506 YP_002261981.1 CDS VSAL_I0454 NC_011312.1 509794 510999 R membrane protein complement(509794..510999) Aliivibrio salmonicida LFI1238 6986507 YP_002261982.1 CDS VSAL_I0456 NC_011312.1 512441 513007 R transposase complement(512441..513007) Aliivibrio salmonicida LFI1238 6986508 YP_002261983.1 CDS VSAL_I0457 NC_011312.1 513025 513447 R transposase complement(513025..513447) Aliivibrio salmonicida LFI1238 6986509 YP_002261984.1 CDS VSAL_I0458 NC_011312.1 514317 514898 R polysaccharide biosynthesis/export protein complement(514317..514898) Aliivibrio salmonicida LFI1238 6986510 YP_002261985.1 CDS VSAL_I0459 NC_011312.1 514899 516215 R Weakly similar to Vibrio parahaemolyticus CPS biosynthesis protein CpsB UniProt:Q847V4 (402 aa) fasta scores: E()=2e-14, 24.936% id in 393 aa; hypothetical protein complement(514899..516215) Aliivibrio salmonicida LFI1238 6986511 YP_002261986.1 CDS ssb NC_011312.1 517928 518479 D binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 517928..518479 Aliivibrio salmonicida LFI1238 6989416 YP_002261987.1 CDS VSAL_I0462 NC_011312.1 518552 519181 R membrane protein complement(518552..519181) Aliivibrio salmonicida LFI1238 6989259 YP_002261988.1 CDS VSAL_I0463 NC_011312.1 519233 519799 R transposase complement(519233..519799) Aliivibrio salmonicida LFI1238 6986513 YP_002261989.1 CDS VSAL_I0464 NC_011312.1 519817 520239 R transposase complement(519817..520239) Aliivibrio salmonicida LFI1238 6986514 YP_002261990.1 CDS VSAL_I0465 NC_011312.1 520546 522531 D regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 520546..522531 Aliivibrio salmonicida LFI1238 6986515 YP_002261991.1 CDS mshI NC_011312.1 522657 524120 D type IV pilus, mannose-sensitive hemagglutinin D (MSHI) 522657..524120 Aliivibrio salmonicida LFI1238 6986516 YP_002261992.1 CDS mshJ NC_011312.1 524113 524751 D type IV pilus, mannose-sensitive hemagglutinin D (MSHJ) 524113..524751 Aliivibrio salmonicida LFI1238 6988845 YP_002261993.1 CDS mshK NC_011312.1 524753 525094 D type IV pilus, mannose-sensitive hemagglutinin D (MSHK) 524753..525094 Aliivibrio salmonicida LFI1238 6988846 YP_002261994.1 CDS mshD NC_011312.1 525107 526747 D type IV pilus, mannose-sensitive hemagglutinin D (MSHD) 525107..526747 Aliivibrio salmonicida LFI1238 6988847 YP_002261995.1 CDS mshM NC_011312.1 526758 527606 D type IV pilus, mannose-sensitive hemagglutinin D (MSHM) 526758..527606 Aliivibrio salmonicida LFI1238 6988840 YP_002261996.1 CDS mshN NC_011312.1 527603 528676 D type IV pilus, mannose-sensitive hemagglutinin D (MSHN) 527603..528676 Aliivibrio salmonicida LFI1238 6988848 YP_002261997.1 CDS mshG NC_011312.1 530410 531636 D type IV pilus, mannose-sensitive hemagglutinin protein 530410..531636 Aliivibrio salmonicida LFI1238 6988842 YP_002261998.1 CDS mshF NC_011312.1 531636 532088 D type IV pilus, mannose-sensitive hemagglutinin protein MshF 531636..532088 Aliivibrio salmonicida LFI1238 6988844 YP_002261999.1 CDS mshB NC_011312.1 532170 532739 D type IV pilus, prepilin-like protein (MSHB) 532170..532739 Aliivibrio salmonicida LFI1238 6988843 YP_002262000.1 CDS mshA NC_011312.1 532892 533365 D Expression may be regulated by Fur; type IV pilus, mannose-sensitive hemagglutinin A 532892..533365 Aliivibrio salmonicida LFI1238 6988838 YP_002262001.1 CDS mshA NC_011312.1 533617 534087 D duplicate of TVS0304; type IV pilus, mannose-sensitive hemagglutinin A 533617..534087 Aliivibrio salmonicida LFI1238 6988836 YP_002262002.1 CDS mshC NC_011312.1 534214 534828 D type IV pilus, prepilin-like protein (MSHC) 534214..534828 Aliivibrio salmonicida LFI1238 6988837 YP_002262003.1 CDS mshD NC_011312.1 534825 535418 D type IV pilus, prepilin-like protein (MSHD) 534825..535418 Aliivibrio salmonicida LFI1238 6988839 YP_002262004.1 CDS mshO NC_011312.1 535418 536173 D Weakly similar to Vibrio cholerae Hypothetical protein MshO UniProt:Q9ZA95 (256 aa) fasta scores: E()=2e-14, 28.846% id in 260 aa; protein MshO 535418..536173 Aliivibrio salmonicida LFI1238 6988841 YP_002262005.1 CDS mshP NC_011312.1 536163 536597 D Weakly similar to Vibrio cholerae MshP UniProt:Q9ZA94 (141 aa) fasta scores: E()=0.017, 28.676% id in 136 aa; protein MshP 536163..536597 Aliivibrio salmonicida LFI1238 6988850 YP_002262006.1 CDS mreB NC_011312.1 541014 542057 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 541014..542057 Aliivibrio salmonicida LFI1238 6988851 YP_002262007.1 CDS mreC NC_011312.1 542080 542937 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 542080..542937 Aliivibrio salmonicida LFI1238 6988832 YP_002262008.1 CDS mreD NC_011312.1 542927 543418 D part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 542927..543418 Aliivibrio salmonicida LFI1238 6988833 YP_002262009.1 CDS VSAL_I0486 NC_011312.1 543428 544003 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 543428..544003 Aliivibrio salmonicida LFI1238 6988834 YP_002262010.1 CDS cafA NC_011312.1 544023 545492 D involved in the processing of the 5'end of 16S rRNA; ribonuclease G 544023..545492 Aliivibrio salmonicida LFI1238 6986517 YP_002262011.1 CDS VSAL_I0488 NC_011312.1 545504 549367 D hypothetical protein 545504..549367 Aliivibrio salmonicida LFI1238 6988298 YP_002262012.1 CDS VSAL_I0489 NC_011312.1 549469 550233 D carbon-nitrogen hydrolase 549469..550233 Aliivibrio salmonicida LFI1238 6986518 YP_002262013.1 CDS tldD NC_011312.1 550344 551789 D protein TldD 550344..551789 Aliivibrio salmonicida LFI1238 6986519 YP_002262014.1 CDS VSAL_I0491 NC_011312.1 551887 552426 R hypothetical protein complement(551887..552426) Aliivibrio salmonicida LFI1238 6989300 YP_002262015.1 CDS pmbA NC_011312.1 552536 553879 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 552536..553879 Aliivibrio salmonicida LFI1238 6986520 YP_002262016.1 CDS VSAL_I0493 NC_011312.1 553963 555318 R magnesium transporter complement(553963..555318) Aliivibrio salmonicida LFI1238 6988990 YP_002262017.1 CDS ptsO NC_011312.1 555630 555908 R phosphocarrier protein NPr complement(555630..555908) Aliivibrio salmonicida LFI1238 6986521 YP_002262018.1 CDS VSAL_I0495 NC_011312.1 555911 556765 R hypothetical protein complement(555911..556765) Aliivibrio salmonicida LFI1238 6989032 YP_002262019.1 CDS ptsN NC_011312.1 556789 557235 R nitrogen regulatory IIA protein, PTS system complement(556789..557235) Aliivibrio salmonicida LFI1238 6986522 YP_002262020.1 CDS VSAL_I0497 NC_011312.1 557237 557524 R sigma-54 modulation protein complement(557237..557524) Aliivibrio salmonicida LFI1238 6989031 YP_002262021.1 CDS rpoN NC_011312.1 557544 559013 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(557544..559013) Aliivibrio salmonicida LFI1238 6986523 YP_002262022.1 CDS VSAL_I0499 NC_011312.1 559040 559765 R ABC transporter ATP-binding protein complement(559040..559765) Aliivibrio salmonicida LFI1238 6989185 YP_002262023.1 CDS VSAL_I0500 NC_011312.1 559768 560268 R hypothetical protein complement(559768..560268) Aliivibrio salmonicida LFI1238 6986524 YP_002262024.1 CDS VSAL_I0501 NC_011312.1 560249 560812 R hypothetical protein complement(560249..560812) Aliivibrio salmonicida LFI1238 6986525 YP_002262025.1 CDS kdsC NC_011312.1 560809 561366 R forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(560809..561366) Aliivibrio salmonicida LFI1238 6986526 YP_002262026.1 CDS kdsD NC_011312.1 561366 562340 R arabinose 5-phosphate isomerase complement(561366..562340) Aliivibrio salmonicida LFI1238 6988734 YP_002262027.1 CDS VSAL_I0504 NC_011312.1 562544 563512 R Similar to Escherichia coli Inner membrane protein YrbG UniProt:P45394 (325 aa) fasta scores: E()=9e-44,44.688% id in 320 aa; sodium/calcium exchanger protein complement(562544..563512) Aliivibrio salmonicida LFI1238 6988735 YP_002262028.1 CDS VSAL_I0505 NC_011312.1 563711 564517 D toluene tolerance protein Ttg2A 563711..564517 Aliivibrio salmonicida LFI1238 6986527 YP_002262029.1 CDS VSAL_I0506 NC_011312.1 564510 565304 D toluene tolerance protein Ttg2B 564510..565304 Aliivibrio salmonicida LFI1238 6986528 YP_002262030.1 CDS VSAL_I0507 NC_011312.1 565307 565801 D toluene tolerance protein Ttg2C 565307..565801 Aliivibrio salmonicida LFI1238 6986529 YP_002262031.1 CDS VSAL_I0508 NC_011312.1 565801 566442 D toluene tolerance protein Ttg2 565801..566442 Aliivibrio salmonicida LFI1238 6986530 YP_002262032.1 CDS VSAL_I0509 NC_011312.1 566442 566762 D hypothetical protein 566442..566762 Aliivibrio salmonicida LFI1238 6986531 YP_002262033.1 CDS VSAL_I0510 NC_011312.1 566762 567019 D hypothetical protein 566762..567019 Aliivibrio salmonicida LFI1238 6986532 YP_002262034.1 CDS murA NC_011312.1 567032 568300 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 567032..568300 Aliivibrio salmonicida LFI1238 6986533 YP_002262035.1 CDS plsC NC_011312.1 568435 569160 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 568435..569160 Aliivibrio salmonicida LFI1238 6988858 YP_002262036.1 CDS VSAL_I0515 NC_011312.1 571115 571462 R transposase complement(571115..571462) Aliivibrio salmonicida LFI1238 6986534 YP_002262037.1 CDS VSAL_I0516 NC_011312.1 571459 571728 R transposase complement(571459..571728) Aliivibrio salmonicida LFI1238 6988201 YP_002262038.1 CDS VSAL_I0517 NC_011312.1 572099 572488 R endoribonuclease L-PSP complement(572099..572488) Aliivibrio salmonicida LFI1238 6986535 YP_002262039.1 CDS pyrI NC_011312.1 572628 573092 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit complement(572628..573092) Aliivibrio salmonicida LFI1238 6986536 YP_002262040.1 CDS pyrB NC_011312.1 573106 574035 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(573106..574035) Aliivibrio salmonicida LFI1238 6989054 YP_002262041.1 CDS argI NC_011312.1 574311 575315 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(574311..575315) Aliivibrio salmonicida LFI1238 6989048 YP_002262042.1 CDS arcA NC_011312.1 575411 576631 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(575411..576631) Aliivibrio salmonicida LFI1238 6988255 YP_002262043.1 CDS VSAL_I0522 NC_011312.1 576784 577200 D hypothetical protein 576784..577200 Aliivibrio salmonicida LFI1238 6988245 YP_002262044.1 CDS VSAL_I0523 NC_011312.1 577288 578124 D hypothetical protein 577288..578124 Aliivibrio salmonicida LFI1238 6986537 YP_002262045.1 CDS valS NC_011312.1 578281 581142 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(578281..581142) Aliivibrio salmonicida LFI1238 6986538 YP_002262046.1 CDS holC NC_011312.1 581253 581696 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(581253..581696) Aliivibrio salmonicida LFI1238 6989370 YP_002262047.1 CDS pepA NC_011312.1 581790 583298 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(581790..583298) Aliivibrio salmonicida LFI1238 6988676 YP_002262048.1 CDS VSAL_I0527 NC_011312.1 583488 584600 D Similar to Escherichia coli Inner membrane protein YjgP UniProt:P0AF98 (366 aa) fasta scores: E()=2.7e-54,43.443% id in 366 aa; permease 583488..584600 Aliivibrio salmonicida LFI1238 6988957 YP_002262049.1 CDS VSAL_I0528 NC_011312.1 584593 585669 D Similar to Escherichia coli Inner membrane protein YjgQ UniProt:P0ADC6 (360 aa) fasta scores: E()=2.6e-66,51.685% id in 356 aa; permease 584593..585669 Aliivibrio salmonicida LFI1238 6986539 YP_002262050.1 CDS VSAL_I0529 NC_011312.1 585746 586222 R membrane protein complement(585746..586222) Aliivibrio salmonicida LFI1238 6986540 YP_002262051.1 CDS VSAL_I0530 NC_011312.1 586622 586879 R hypothetical protein complement(586622..586879) Aliivibrio salmonicida LFI1238 6988104 YP_002262052.1 CDS dgkA NC_011312.1 586955 587341 R diacylglycerol kinase complement(586955..587341) Aliivibrio salmonicida LFI1238 6986542 YP_002262053.1 CDS mltC NC_011312.1 588313 589449 R membrane-bound lytic murein transglycosylase C complement(588313..589449) Aliivibrio salmonicida LFI1238 6988111 YP_002262054.1 CDS yggX NC_011312.1 589560 589832 R hypothetical protein complement(589560..589832) Aliivibrio salmonicida LFI1238 6988810 YP_002262055.1 CDS mutY NC_011312.1 589835 590887 R A/G-specific adenine glycosylase complement(589835..590887) Aliivibrio salmonicida LFI1238 6989435 YP_002262056.1 CDS trmB NC_011312.1 591105 591821 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 591105..591821 Aliivibrio salmonicida LFI1238 6988872 YP_002262057.1 CDS glsA NC_011312.1 591928 592848 D catalyzes the formation of glutamate from glutamine; glutaminase 591928..592848 Aliivibrio salmonicida LFI1238 6989321 YP_002262058.1 CDS yggW NC_011312.1 592953 594113 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(592953..594113) Aliivibrio salmonicida LFI1238 6988604 YP_002262059.1 CDS VSAL_I0538 NC_011312.1 594117 594713 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(594117..594713) Aliivibrio salmonicida LFI1238 6989434 YP_002262060.1 CDS VSAL_I0539 NC_011312.1 594724 595155 R hypothetical protein complement(594724..595155) Aliivibrio salmonicida LFI1238 6986543 YP_002262061.1 CDS VSAL_I0540 NC_011312.1 595227 595478 R hypothetical protein complement(595227..595478) Aliivibrio salmonicida LFI1238 6986544 YP_002262062.1 CDS VSAL_I0541 NC_011312.1 595507 596061 R membrane protein, related to K+ transport complement(595507..596061) Aliivibrio salmonicida LFI1238 6986545 YP_002262063.1 CDS proC NC_011312.1 596137 596955 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(596137..596955) Aliivibrio salmonicida LFI1238 6986546 YP_002262064.1 CDS VSAL_I0543 NC_011312.1 596942 597709 R membrane protein, related to K+ transport complement(596942..597709) Aliivibrio salmonicida LFI1238 6989013 YP_002262065.1 CDS pilT NC_011312.1 597733 598770 D twitching mobility protein PilT, type II/IV secretion system protein 597733..598770 Aliivibrio salmonicida LFI1238 6986547 YP_002262066.1 CDS pilU NC_011312.1 598773 599879 D twitching motility protein PilU, type II/IV secretion system protein 598773..599879 Aliivibrio salmonicida LFI1238 6988985 YP_002262067.1 CDS yqgF NC_011312.1 599983 600408 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(599983..600408) Aliivibrio salmonicida LFI1238 6988986 YP_002262068.1 CDS VSAL_I0547 NC_011312.1 600405 600968 R hypothetical protein complement(600405..600968) Aliivibrio salmonicida LFI1238 6989438 YP_002262069.1 CDS gshB NC_011312.1 601042 602028 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(601042..602028) Aliivibrio salmonicida LFI1238 6986548 YP_002262070.1 CDS VSAL_I0549 NC_011312.1 602012 602743 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(602012..602743) Aliivibrio salmonicida LFI1238 6988631 YP_002262071.1 CDS VSAL_I0550 NC_011312.1 602822 603535 R endonuclease I complement(602822..603535) Aliivibrio salmonicida LFI1238 6986549 YP_002262072.1 CDS VSAL_I0551 NC_011312.1 603626 604111 R Similar to Escherichia coli Protein SprT UniProt:P39902 (165 aa) fasta scores: E()=5.2e-31, 51.634% id in 153 aa; hypothetical protein complement(603626..604111) Aliivibrio salmonicida LFI1238 6986550 YP_002262073.1 CDS metK NC_011312.1 604227 605381 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(604227..605381) Aliivibrio salmonicida LFI1238 6986551 YP_002262074.1 CDS VSAL_I0553 NC_011312.1 605512 605667 R hypothetical protein complement(605512..605667) Aliivibrio salmonicida LFI1238 6988797 YP_002262075.1 CDS tktA NC_011312.1 605768 607765 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 605768..607765 Aliivibrio salmonicida LFI1238 6986552 YP_002262076.1 CDS epd NC_011312.1 607905 608924 D NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 607905..608924 Aliivibrio salmonicida LFI1238 6989299 YP_002262077.1 CDS pgk NC_011312.1 609091 610254 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 609091..610254 Aliivibrio salmonicida LFI1238 6988444 YP_002262078.1 CDS fbaA NC_011312.1 610409 611485 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 610409..611485 Aliivibrio salmonicida LFI1238 6988965 YP_002262079.1 CDS srmB NC_011312.1 611726 612976 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(611726..612976) Aliivibrio salmonicida LFI1238 6988480 YP_002262080.1 CDS VSAL_I0559 NC_011312.1 613065 613769 R hypothetical protein complement(613065..613769) Aliivibrio salmonicida LFI1238 6989257 YP_002262081.1 CDS VSAL_I0560 NC_011312.1 614058 615371 D branched chain amino acid transport system II carrier protein 614058..615371 Aliivibrio salmonicida LFI1238 6986553 YP_002262082.1 CDS fldB NC_011312.1 615500 616018 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB complement(615500..616018) Aliivibrio salmonicida LFI1238 6986554 YP_002262083.1 CDS xerD NC_011312.1 616155 617057 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 616155..617057 Aliivibrio salmonicida LFI1238 6988515 YP_002262084.1 CDS dsbC NC_011312.1 617137 617913 D thiol/disulfide interchange protein DsbC precursor 617137..617913 Aliivibrio salmonicida LFI1238 6989419 YP_002262085.1 CDS recJ NC_011312.1 617993 619732 D 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 617993..619732 Aliivibrio salmonicida LFI1238 6988425 YP_002262086.1 CDS lysS NC_011312.1 621111 622616 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 621111..622616 Aliivibrio salmonicida LFI1238 6989004 YP_002262087.1 CDS VSAL_I0567 NC_011312.1 623013 624350 D Similar to Escherichia coli Transcriptional regulatory protein ZraR UniProt:P14375 (441 aa) fasta scores: E()=2.5e-36, 34.197% id in 386 aa; sigma-54 interacting regulatory protein 623013..624350 Aliivibrio salmonicida LFI1238 6988772 YP_002262088.1 CDS mutH NC_011312.1 624417 625085 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(624417..625085) Aliivibrio salmonicida LFI1238 6986555 YP_002262089.1 CDS nudH NC_011312.1 625679 626191 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 625679..626191 Aliivibrio salmonicida LFI1238 6988866 YP_002262090.1 CDS ptsP NC_011312.1 626228 628489 D member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 626228..628489 Aliivibrio salmonicida LFI1238 6988924 YP_002262091.1 CDS VSAL_I0571 NC_011312.1 628490 629293 D integral membrane protein 628490..629293 Aliivibrio salmonicida LFI1238 6989033 YP_002262092.1 CDS lgt NC_011312.1 629304 630155 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 629304..630155 Aliivibrio salmonicida LFI1238 6986556 YP_002262093.1 CDS thyA NC_011312.1 630234 631091 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 630234..631091 Aliivibrio salmonicida LFI1238 6988750 YP_002262094.1 CDS nptA NC_011312.1 631160 632305 R sodium-dependent phosphate pump complement(631160..632305) Aliivibrio salmonicida LFI1238 6989296 YP_002262095.1 CDS nhaR NC_011312.1 632642 633583 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 632642..633583 Aliivibrio salmonicida LFI1238 6988906 YP_002262096.1 CDS hlyU NC_011312.1 633619 633930 D transcriptional activator HlyU 633619..633930 Aliivibrio salmonicida LFI1238 6988896 YP_002262097.1 CDS rpsT NC_011312.1 634052 634312 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(634052..634312) Aliivibrio salmonicida LFI1238 6988673 YP_002262098.1 CDS mviN NC_011312.1 634534 636093 D virulence factor MviN-like protein 634534..636093 Aliivibrio salmonicida LFI1238 6989207 YP_002262099.1 CDS ribF NC_011312.1 636184 637116 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 636184..637116 Aliivibrio salmonicida LFI1238 6988873 YP_002262100.1 CDS ileS NC_011312.1 637153 640011 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 637153..640011 Aliivibrio salmonicida LFI1238 6989100 YP_002262101.1 CDS lspA NC_011312.1 640011 640526 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 640011..640526 Aliivibrio salmonicida LFI1238 6988704 YP_002262102.1 CDS fkpB NC_011312.1 640621 641052 D FkbP-type 16 kDa peptidyl-prolyl cis-trans isomerase 640621..641052 Aliivibrio salmonicida LFI1238 6988763 YP_002262103.1 CDS ispH NC_011312.1 641077 642021 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 641077..642021 Aliivibrio salmonicida LFI1238 6988501 YP_002262104.1 CDS dapB NC_011312.1 642091 642900 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 642091..642900 Aliivibrio salmonicida LFI1238 6988729 YP_002262105.1 CDS carA NC_011312.1 643459 644613 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 643459..644613 Aliivibrio salmonicida LFI1238 6988389 YP_002262106.1 CDS carB NC_011312.1 644631 647861 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 644631..647861 Aliivibrio salmonicida LFI1238 6988302 YP_002262107.1 CDS dacB NC_011312.1 647963 649372 R penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase complement(647963..649372) Aliivibrio salmonicida LFI1238 6988303 YP_002262108.1 CDS ompU NC_011312.1 649514 650515 R In Vibrio anguillarum OmpU limits the progression of biofilm formation outside of the fish host.; major outer membrane protein OmpU complement(649514..650515) Aliivibrio salmonicida LFI1238 6988386 YP_002262109.1 CDS greA NC_011312.1 651098 651571 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 651098..651571 Aliivibrio salmonicida LFI1238 6988931 YP_002262110.1 CDS VSAL_I0590 NC_011312.1 651666 651962 R RNA-binding protein complement(651666..651962) Aliivibrio salmonicida LFI1238 6988623 YP_002262111.1 CDS rrmJ NC_011312.1 652081 652710 D Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 652081..652710 Aliivibrio salmonicida LFI1238 6986557 YP_002262112.1 CDS hflB NC_011312.1 652796 654778 D cell division protein FtsH 652796..654778 Aliivibrio salmonicida LFI1238 6989210 YP_002262113.1 CDS folP NC_011312.1 654843 655676 D dihydropteroate synthase 654843..655676 Aliivibrio salmonicida LFI1238 6988653 YP_002262114.1 CDS glmM NC_011312.1 655733 657070 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 655733..657070 Aliivibrio salmonicida LFI1238 6988558 YP_002262115.1 CDS secG NC_011312.1 657222 657554 D preprotein translocase subunit SecG 657222..657554 Aliivibrio salmonicida LFI1238 6988590 YP_002262116.1 CDS VSAL_I0596 NC_011312.1 657962 658417 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 657962..658417 Aliivibrio salmonicida LFI1238 6988113 YP_002262117.1 CDS nusA NC_011312.1 658434 659921 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 658434..659921 Aliivibrio salmonicida LFI1238 6986558 YP_002262118.1 CDS infB NC_011312.1 659945 662620 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 659945..662620 Aliivibrio salmonicida LFI1238 6988925 YP_002262119.1 CDS rbfA NC_011312.1 662734 663141 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 662734..663141 Aliivibrio salmonicida LFI1238 6986559 YP_002262120.1 CDS truB NC_011312.1 663141 664097 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 663141..664097 Aliivibrio salmonicida LFI1238 6989065 YP_002262121.1 CDS rpsO NC_011312.1 664260 664529 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 664260..664529 Aliivibrio salmonicida LFI1238 6988114 YP_002262122.1 CDS pnp NC_011312.1 664832 666988 D polynucleotide phosphorylase/polyadenylase 664832..666988 Aliivibrio salmonicida LFI1238 6989202 YP_002262123.1 CDS nlpI NC_011312.1 667099 668082 D lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 667099..668082 Aliivibrio salmonicida LFI1238 6988991 YP_002262124.1 CDS VSAL_I0604 NC_011312.1 668165 669043 R peptidase complement(668165..669043) Aliivibrio salmonicida LFI1238 6988899 YP_002262125.1 CDS VSAL_I0605 NC_011312.1 669053 670054 R peptidase complement(669053..670054) Aliivibrio salmonicida LFI1238 6986560 YP_002262126.1 CDS VSAL_I0606 NC_011312.1 670270 672309 R signaling protein complement(670270..672309) Aliivibrio salmonicida LFI1238 6986561 YP_002262127.1 CDS VSAL_I0607 NC_011312.1 672524 673042 D hypothetical protein 672524..673042 Aliivibrio salmonicida LFI1238 6986562 YP_002262128.1 CDS VSAL_I0608 NC_011312.1 673032 673535 D acetyltransferase 673032..673535 Aliivibrio salmonicida LFI1238 6986563 YP_002262129.1 CDS VSAL_I0609 NC_011312.1 673678 673836 D hypothetical protein 673678..673836 Aliivibrio salmonicida LFI1238 6986564 YP_002262130.1 CDS VSAL_I0610 NC_011312.1 673857 674105 R Doubtful CDS, poor translational start site. No significant database matches to the full length CDS; hypothetical protein complement(673857..674105) Aliivibrio salmonicida LFI1238 6986565 YP_002262131.1 CDS VSAL_I0611 NC_011312.1 674232 674633 D DNA polymerase III subunit psi 674232..674633 Aliivibrio salmonicida LFI1238 6986566 YP_002262132.1 CDS rimI NC_011312.1 674623 675069 D ribosomal-protein-alanine acetyltransferase 674623..675069 Aliivibrio salmonicida LFI1238 6986567 YP_002262133.1 CDS prfC NC_011312.1 675187 676767 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 675187..676767 Aliivibrio salmonicida LFI1238 6989103 YP_002262134.1 CDS VSAL_I0614 NC_011312.1 676846 676992 D hypothetical protein 676846..676992 Aliivibrio salmonicida LFI1238 6989005 YP_002262135.1 CDS VSAL_I0615 NC_011312.1 676973 677749 D DNase 676973..677749 Aliivibrio salmonicida LFI1238 6986568 YP_002262136.1 CDS VSAL_I0616 NC_011312.1 677973 679256 D sodium-dependent nucleoside transporter protein 677973..679256 Aliivibrio salmonicida LFI1238 6986569 YP_002262137.1 CDS VSAL_I0617 NC_011312.1 679393 680700 D transposase 679393..680700 Aliivibrio salmonicida LFI1238 6986570 YP_002262138.1 CDS VSAL_I0618 NC_011312.1 681014 681223 D Expression may be stress-induced; hypothetical protein 681014..681223 Aliivibrio salmonicida LFI1238 6986571 YP_002262139.1 CDS deoC NC_011312.1 681508 682284 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 681508..682284 Aliivibrio salmonicida LFI1238 6986572 YP_002262140.1 CDS deoA NC_011312.1 682400 683731 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 682400..683731 Aliivibrio salmonicida LFI1238 6988403 YP_002262141.1 CDS deoB NC_011312.1 683742 684962 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 683742..684962 Aliivibrio salmonicida LFI1238 6988401 YP_002262142.1 CDS smp NC_011312.1 685836 686435 R peripheral membrane protein complement(685836..686435) Aliivibrio salmonicida LFI1238 6988404 YP_002262143.1 CDS serB NC_011312.1 686566 687534 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 686566..687534 Aliivibrio salmonicida LFI1238 6989250 YP_002262144.1 CDS VSAL_I0625 NC_011312.1 687588 689933 R May be involved in signalling; hypothetical protein complement(687588..689933) Aliivibrio salmonicida LFI1238 6989240 YP_002262145.1 CDS radA NC_011312.1 690051 691430 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 690051..691430 Aliivibrio salmonicida LFI1238 6986573 YP_002262146.1 CDS fusA NC_011312.1 691624 693708 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 691624..693708 Aliivibrio salmonicida LFI1238 6989060 YP_002262147.1 CDS VSAL_I0628 NC_011312.1 693819 694052 R hypothetical protein complement(693819..694052) Aliivibrio salmonicida LFI1238 6988578 YP_002262148.1 CDS codA NC_011312.1 694165 695442 R Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase complement(694165..695442) Aliivibrio salmonicida LFI1238 6986574 YP_002262149.1 CDS codB NC_011312.1 695453 696706 R cytosine permease complement(695453..696706) Aliivibrio salmonicida LFI1238 6988343 YP_002262150.1 CDS VSAL_I0631 NC_011312.1 697136 698812 R AMP-binding acetyl-CoA synthetase complement(697136..698812) Aliivibrio salmonicida LFI1238 6988344 YP_002262151.1 CDS mutS NC_011312.1 699029 701596 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(699029..701596) Aliivibrio salmonicida LFI1238 6986575 YP_002262152.1 CDS VSAL_I0633 NC_011312.1 701705 702202 D competence-damaged protein 701705..702202 Aliivibrio salmonicida LFI1238 6988870 YP_002262153.1 CDS recA NC_011312.1 702343 703386 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 702343..703386 Aliivibrio salmonicida LFI1238 6986576 YP_002262154.1 CDS alaS NC_011312.1 703629 706211 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 703629..706211 Aliivibrio salmonicida LFI1238 6989075 YP_002262155.1 CDS lysC NC_011312.1 706221 707390 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 706221..707390 Aliivibrio salmonicida LFI1238 6988230 YP_002262156.1 CDS csrA NC_011312.1 707472 707672 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 707472..707672 Aliivibrio salmonicida LFI1238 6988771 YP_002262157.1 CDS VSAL_I0638 NC_011312.1 709310 709561 D oxaloacetate decarboxylase subunit gamma 709310..709561 Aliivibrio salmonicida LFI1238 6988122 YP_002262158.1 CDS VSAL_I0639 NC_011312.1 709599 711386 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 709599..711386 Aliivibrio salmonicida LFI1238 6986577 YP_002262159.1 CDS VSAL_I0640 NC_011312.1 711398 712528 D oxaloacetate decarboxylase subunit beta 711398..712528 Aliivibrio salmonicida LFI1238 6986578 YP_002262160.1 CDS VSAL_I0641 NC_011312.1 712625 713056 D hypothetical protein 712625..713056 Aliivibrio salmonicida LFI1238 6986579 YP_002262161.1 CDS VSAL_I0642 NC_011312.1 713065 715917 D pepdidase, zinc protease 713065..715917 Aliivibrio salmonicida LFI1238 6986580 YP_002262162.1 CDS gshA NC_011312.1 716044 717609 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 716044..717609 Aliivibrio salmonicida LFI1238 6986581 YP_002262163.1 CDS VSAL_I0644 NC_011312.1 717676 718275 D lipoprotein 717676..718275 Aliivibrio salmonicida LFI1238 6988630 YP_002262164.1 CDS luxS NC_011312.1 718309 718827 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 718309..718827 Aliivibrio salmonicida LFI1238 6986582 YP_002262165.1 CDS VSAL_I0646 NC_011312.1 718895 720166 R transporter complement(718895..720166) Aliivibrio salmonicida LFI1238 6988767 YP_002262166.1 CDS VSAL_I0647 NC_011312.1 720268 721062 R hypothetical protein complement(720268..721062) Aliivibrio salmonicida LFI1238 6986583 YP_002262167.1 CDS ffh NC_011312.1 721225 722610 D signal recognition particle protein 721225..722610 Aliivibrio salmonicida LFI1238 6986584 YP_002262168.1 CDS rpsP NC_011312.1 722830 723120 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 722830..723120 Aliivibrio salmonicida LFI1238 6988494 YP_002262169.1 CDS rimM NC_011312.1 723147 723674 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 723147..723674 Aliivibrio salmonicida LFI1238 6989203 YP_002262170.1 CDS trmD NC_011312.1 723697 724446 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 723697..724446 Aliivibrio salmonicida LFI1238 6989106 YP_002262171.1 CDS rplS NC_011312.1 724487 724840 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 724487..724840 Aliivibrio salmonicida LFI1238 6989322 YP_002262172.1 CDS aroF NC_011312.1 725054 726127 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 725054..726127 Aliivibrio salmonicida LFI1238 6989162 YP_002262173.1 CDS tyrA NC_011312.1 726134 727267 D catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 726134..727267 Aliivibrio salmonicida LFI1238 6988262 YP_002262174.1 CDS VSAL_I0655 NC_011312.1 727315 728328 R membrane associated metallopeptidases complement(727315..728328) Aliivibrio salmonicida LFI1238 6989344 YP_002262175.1 CDS VSAL_I0656 NC_011312.1 728351 728716 R signaling protein complement(728351..728716) Aliivibrio salmonicida LFI1238 6986585 YP_002262176.1 CDS slt NC_011312.1 730675 732609 D soluble lytic murein transglycosylase precursor 730675..732609 Aliivibrio salmonicida LFI1238 6986587 YP_002262177.1 CDS trpR NC_011312.1 732680 733006 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 732680..733006 Aliivibrio salmonicida LFI1238 6989247 YP_002262178.1 CDS VSAL_I0660 NC_011312.1 732975 733496 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(732975..733496) Aliivibrio salmonicida LFI1238 6989333 YP_002262179.1 CDS pheA NC_011312.1 733504 734679 R P-protein (includes: chorismate mutase and prephenate dehydratase) complement(733504..734679) Aliivibrio salmonicida LFI1238 6986588 YP_002262180.1 CDS raiA NC_011312.1 734792 735154 R ribosome-associated inhibitor A complement(734792..735154) Aliivibrio salmonicida LFI1238 6988969 YP_002262181.1 CDS VSAL_I0663 NC_011312.1 735514 736281 R outer membrane protein complement(735514..736281) Aliivibrio salmonicida LFI1238 6989062 YP_002262182.1 CDS rluD NC_011312.1 736402 737376 D responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 736402..737376 Aliivibrio salmonicida LFI1238 6986589 YP_002262183.1 CDS VSAL_I0665 NC_011312.1 737376 738110 D hypothetical protein 737376..738110 Aliivibrio salmonicida LFI1238 6989111 YP_002262184.1 CDS clpB NC_011312.1 738205 740790 D chaperone ClpB (heat-shock protein) 738205..740790 Aliivibrio salmonicida LFI1238 6986590 YP_002262185.1 CDS VSAL_I0667 NC_011312.1 746868 747275 R hypothetical protein complement(746868..747275) Aliivibrio salmonicida LFI1238 6988128 YP_002262186.1 CDS VSAL_I0668 NC_011312.1 747265 748509 R hypothetical protein complement(747265..748509) Aliivibrio salmonicida LFI1238 6986591 YP_002262187.1 CDS VSAL_I0669 NC_011312.1 748509 749141 R hypothetical protein complement(748509..749141) Aliivibrio salmonicida LFI1238 6986592 YP_002262188.1 CDS VSAL_I0670 NC_011312.1 749107 749622 R Similar to Pseudomonas aeruginosa Type 4 fimbrial biogenesis protein FimU UniProt:Q59652 (168 aa) fasta scores: E()=5.2e-05, 31.447% id in 159 aa; hypothetical protein complement(749107..749622) Aliivibrio salmonicida LFI1238 6986593 YP_002262189.1 CDS VSAL_I0671 NC_011312.1 749726 750157 D Similar to Pseudomonas aeruginosa Type 4 fimbrial biogenesis protein PilE UniProt:Q60148 (141 aa) fasta scores: E()=4.6e-08, 32.168% id in 143 aa; hypothetical protein 749726..750157 Aliivibrio salmonicida LFI1238 6986594 YP_002262190.1 CDS VSAL_I0672 NC_011312.1 750194 751345 R chromate transporter complement(750194..751345) Aliivibrio salmonicida LFI1238 6986595 YP_002262191.1 CDS VSAL_I0674 NC_011312.1 752403 752591 R hypothetical protein complement(752403..752591) Aliivibrio salmonicida LFI1238 6986597 YP_002262192.1 CDS dapD NC_011312.1 752758 753810 R Large N-terminal truncation of around 110 amino acid residues compared with the Corynebacterium glutamicum orthologue; tetrahydrodipicolinate succinylase complement(752758..753810) Aliivibrio salmonicida LFI1238 6986598 YP_002262193.1 CDS VSAL_I0676 NC_011312.1 754187 754477 R hypothetical protein complement(754187..754477) Aliivibrio salmonicida LFI1238 6988390 YP_002262194.1 CDS VSAL_I0677 NC_011312.1 754689 755327 D hypothetical protein 754689..755327 Aliivibrio salmonicida LFI1238 6986599 YP_002262195.1 CDS VSAL_I0678 NC_011312.1 755360 756235 R LysR family transcriptional regulator complement(755360..756235) Aliivibrio salmonicida LFI1238 6986600 YP_002262196.1 CDS VSAL_I0679 NC_011312.1 756371 757360 D C4-dicarboxylate/malic acid transport protein 756371..757360 Aliivibrio salmonicida LFI1238 6986601 YP_002262197.1 CDS recC NC_011312.1 757441 760824 D catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 757441..760824 Aliivibrio salmonicida LFI1238 6986602 YP_002262198.1 CDS recB NC_011312.1 761158 764784 D exodeoxyribonuclease V subunit beta 761158..764784 Aliivibrio salmonicida LFI1238 6989077 YP_002262199.1 CDS recD NC_011312.1 764777 766801 D CDS contains additional 60 internal amino acid residues in comparison to the E.coli orthologue; exodeoxyribonuclease V subunit alpha 764777..766801 Aliivibrio salmonicida LFI1238 6989076 YP_002262200.1 CDS dcuB NC_011312.1 767012 768346 R anaerobic c4-dicarboxylate transporter DcuB complement(767012..768346) Aliivibrio salmonicida LFI1238 6989078 YP_002262201.1 CDS argH NC_011312.1 768445 769827 R argininosuccinate lyase complement(768445..769827) Aliivibrio salmonicida LFI1238 6988395 YP_002262202.1 CDS argA NC_011312.1 770708 772057 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(770708..772057) Aliivibrio salmonicida LFI1238 6988253 YP_002262203.1 CDS VSAL_I0686 NC_011312.1 772199 772585 D Possible alternative translational start site after codon 1; hypothetical protein 772199..772585 Aliivibrio salmonicida LFI1238 6988248 YP_002262204.1 CDS mltA NC_011312.1 772764 773864 D membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 772764..773864 Aliivibrio salmonicida LFI1238 6986603 YP_002262205.1 CDS VSAL_I0688 NC_011312.1 773959 774774 D hypothetical protein 773959..774774 Aliivibrio salmonicida LFI1238 6988809 YP_002262206.1 CDS VSAL_I0689 NC_011312.1 774899 775336 R Similar to Escherichia coli ygdk SufE-like protein YgdK. Members of the YgdK/SufE protein family are enhancers of cysteine desulfurases; conserved hypothetical protein, SufE-related protein complement(774899..775336) Aliivibrio salmonicida LFI1238 6986604 YP_002262207.1 CDS sufS NC_011312.1 775361 776578 R cysteine desulfurase complement(775361..776578) Aliivibrio salmonicida LFI1238 6986605 YP_002262208.1 CDS gcvA NC_011312.1 776939 777847 D Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 776939..777847 Aliivibrio salmonicida LFI1238 6989267 YP_002262209.1 CDS VSAL_I0692 NC_011312.1 777840 778226 D membrane protein 777840..778226 Aliivibrio salmonicida LFI1238 6988586 YP_002262210.1 CDS mtfA NC_011312.1 778223 779314 D RNA 2'-O-ribose methyltransferase 778223..779314 Aliivibrio salmonicida LFI1238 6986606 YP_002262211.1 CDS xni NC_011312.1 779521 780294 R has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX complement(779521..780294) Aliivibrio salmonicida LFI1238 6988853 YP_002262212.1 CDS VSAL_I0695 NC_011312.1 780377 781735 R hypothetical protein complement(780377..781735) Aliivibrio salmonicida LFI1238 6988461 YP_002262213.1 CDS VSAL_I0696 NC_011312.1 781864 783426 R Expression may be regulated by Fur; hypothetical protein complement(781864..783426) Aliivibrio salmonicida LFI1238 6986607 YP_002262214.1 CDS VSAL_I0697 NC_011312.1 783603 785834 R hypothetical protein complement(783603..785834) Aliivibrio salmonicida LFI1238 6986608 YP_002262215.1 CDS queF NC_011312.1 785945 786790 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(785945..786790) Aliivibrio salmonicida LFI1238 6986609 YP_002262216.1 CDS syd NC_011312.1 786899 787447 D SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 786899..787447 Aliivibrio salmonicida LFI1238 6989059 YP_002262217.1 CDS VSAL_I0700 NC_011312.1 787551 788324 D hypothetical protein 787551..788324 Aliivibrio salmonicida LFI1238 6989271 YP_002262218.1 CDS VSAL_I0701 NC_011312.1 788386 788841 R hypothetical protein complement(788386..788841) Aliivibrio salmonicida LFI1238 6986610 YP_002262219.1 CDS VSAL_I0702 NC_011312.1 788841 789110 R hypothetical protein complement(788841..789110) Aliivibrio salmonicida LFI1238 6986611 YP_002262220.1 CDS VSAL_I0703 NC_011312.1 790040 791326 D Possible alternative translational start site after codon 7; PTS system, cellobiose permease IIC component 790040..791326 Aliivibrio salmonicida LFI1238 6988358 YP_002262221.1 CDS bglE NC_011312.1 791444 791749 D PTS system, cellobiose-specific component IIB 791444..791749 Aliivibrio salmonicida LFI1238 6986613 YP_002262222.1 CDS pbgA NC_011312.1 791836 793245 D 6-phospho-beta-glucosidase 791836..793245 Aliivibrio salmonicida LFI1238 6988289 YP_002262223.1 CDS VSAL_I0706 NC_011312.1 793275 794210 D glucokinase 793275..794210 Aliivibrio salmonicida LFI1238 6988948 YP_002262224.1 CDS bglI NC_011312.1 794221 794544 D phosphotransferase system (PTS) component IIA 794221..794544 Aliivibrio salmonicida LFI1238 6986614 YP_002262225.1 CDS VSAL_I0708 NC_011312.1 794614 795624 D LacI family transcriptional regulator 794614..795624 Aliivibrio salmonicida LFI1238 6988290 YP_002262226.1 CDS lamB NC_011312.1 795907 797184 D maltoporin precursor (outer membrane protein S) 795907..797184 Aliivibrio salmonicida LFI1238 6986615 YP_002262227.1 CDS VSAL_I0710 NC_011312.1 797251 797559 R hypothetical protein complement(797251..797559) Aliivibrio salmonicida LFI1238 6988740 YP_002262228.1 CDS VSAL_I0711 NC_011312.1 797562 798602 R hypothetical protein complement(797562..798602) Aliivibrio salmonicida LFI1238 6986616 YP_002262229.1 CDS VSAL_I0712 NC_011312.1 798705 799025 D hypothetical protein 798705..799025 Aliivibrio salmonicida LFI1238 6986617 YP_002262230.1 CDS truC NC_011312.1 799022 799813 D catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 799022..799813 Aliivibrio salmonicida LFI1238 6986618 YP_002262231.1 CDS suhB NC_011312.1 799918 800772 R inositol-1-monophosphatase complement(799918..800772) Aliivibrio salmonicida LFI1238 6989337 YP_002262232.1 CDS yfhQ NC_011312.1 800930 801658 D Similar to Escherichia coli Hypothetical tRNA/rRNA methyltransferase YfhQ UniProt:P0AE01 (246 aa) fasta scores: E()=6e-57, 63.934% id in 244 aa; tRNA/rRNA methyltransferase 800930..801658 Aliivibrio salmonicida LFI1238 6989268 YP_002262233.1 CDS VSAL_I0716 NC_011312.1 801764 802270 D Expression may be stress-induced; HTH-type transcriptional regulator 801764..802270 Aliivibrio salmonicida LFI1238 6989433 YP_002262234.1 CDS iscS NC_011312.1 802296 803516 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 802296..803516 Aliivibrio salmonicida LFI1238 6986619 YP_002262235.1 CDS VSAL_I0718 NC_011312.1 803550 803927 D Weakly similar to chain A, solution structure of iron-sulfur cluster assembly protein SufU From Bacillus subtilis (pdb 2AZ) identity=(33, 86); scaffold protein 803550..803927 Aliivibrio salmonicida LFI1238 6988722 YP_002262236.1 CDS iscA NC_011312.1 804048 804371 D iron-binding protein IscA (iron-sulfur cluster assembly protein) 804048..804371 Aliivibrio salmonicida LFI1238 6986620 YP_002262237.1 CDS hscB NC_011312.1 804387 804902 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 804387..804902 Aliivibrio salmonicida LFI1238 6988721 YP_002262238.1 CDS hscA NC_011312.1 804938 806791 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 804938..806791 Aliivibrio salmonicida LFI1238 6988683 YP_002262239.1 CDS fdx NC_011312.1 806794 807132 D 2Fe-2S ferredoxin 806794..807132 Aliivibrio salmonicida LFI1238 6988682 YP_002262240.1 CDS VSAL_I0723 NC_011312.1 807261 807461 D Similar to hypothetical protein yfhJ (PDB 1UJ8). Evalue=6e-20, identity=(38, 62). Member of the ISC machinery of E.coli involved in assembly of iron-sulfur clusters; iron-sulfur cluster assembly protein 807261..807461 Aliivibrio salmonicida LFI1238 6988488 YP_002262241.1 CDS pepB NC_011312.1 807699 808985 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 807699..808985 Aliivibrio salmonicida LFI1238 6986621 YP_002262242.1 CDS ndk NC_011312.1 809074 809508 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 809074..809508 Aliivibrio salmonicida LFI1238 6988958 YP_002262243.1 CDS VSAL_I0726 NC_011312.1 809739 810890 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 809739..810890 Aliivibrio salmonicida LFI1238 6988888 YP_002262244.1 CDS VSAL_I0727 NC_011312.1 810887 811648 D type 4 fimbrial biogenesis protein PilF 810887..811648 Aliivibrio salmonicida LFI1238 6986622 YP_002262245.1 CDS VSAL_I0728 NC_011312.1 811638 812528 D hypothetical protein 811638..812528 Aliivibrio salmonicida LFI1238 6986623 YP_002262246.1 CDS ispG NC_011312.1 812541 813659 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 812541..813659 Aliivibrio salmonicida LFI1238 6986624 YP_002262247.1 CDS hisS NC_011312.1 813694 814968 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 813694..814968 Aliivibrio salmonicida LFI1238 6988728 YP_002262248.1 CDS VSAL_I0731 NC_011312.1 814980 815591 D outer membrane protein 814980..815591 Aliivibrio salmonicida LFI1238 6988668 YP_002262249.1 CDS yfgL NC_011312.1 815602 816759 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 815602..816759 Aliivibrio salmonicida LFI1238 6986625 YP_002262250.1 CDS engA NC_011312.1 816940 818442 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 816940..818442 Aliivibrio salmonicida LFI1238 6989432 YP_002262251.1 CDS VSAL_I0734 NC_011312.1 818497 819372 D hypothetical protein 818497..819372 Aliivibrio salmonicida LFI1238 6986626 YP_002262252.1 CDS VSAL_I0735 NC_011312.1 819669 819905 D hypothetical protein 819669..819905 Aliivibrio salmonicida LFI1238 6986627 YP_002262253.1 CDS xseA NC_011312.1 819907 821241 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(819907..821241) Aliivibrio salmonicida LFI1238 6986628 YP_002262254.1 CDS guaB NC_011312.1 821451 822914 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 821451..822914 Aliivibrio salmonicida LFI1238 6989420 YP_002262255.1 CDS guaA NC_011312.1 823131 824684 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 823131..824684 Aliivibrio salmonicida LFI1238 6988634 YP_002262256.1 CDS VSAL_I0739 NC_011312.1 824963 826522 D Expression may be regulated by Fur; ion transporter 824963..826522 Aliivibrio salmonicida LFI1238 6988635 YP_002262257.1 CDS VSAL_I0740 NC_011312.1 826619 827254 R DNA-binding protein complement(826619..827254) Aliivibrio salmonicida LFI1238 6986629 YP_002262258.1 CDS VSAL_I0741 NC_011312.1 827315 828592 R hypothetical protein complement(827315..828592) Aliivibrio salmonicida LFI1238 6986630 YP_002262259.1 CDS VSAL_I0742 NC_011312.1 828610 828999 R endoribonuclease L-PSP complement(828610..828999) Aliivibrio salmonicida LFI1238 6986631 YP_002262260.1 CDS VSAL_I0744 NC_011312.1 830386 831267 R transposase complement(830386..831267) Aliivibrio salmonicida LFI1238 6989436 YP_002262261.1 CDS yeiG NC_011312.1 831701 832543 R esterase complement(831701..832543) Aliivibrio salmonicida LFI1238 6986633 YP_002262262.1 CDS adhC NC_011312.1 832820 833968 R Expression may be stress-induced; alcohol dehydrogenase class 3 complement(832820..833968) Aliivibrio salmonicida LFI1238 6989427 YP_002262263.1 CDS VSAL_I0747 NC_011312.1 834157 835029 D Similar to Alcaligenes eutrophus LysR-type Transcriptional Regulator CbnR (PDB 1IXC). Evalue=1e-06,identity=(26, 65); LysR family transcriptional regulator 834157..835029 Aliivibrio salmonicida LFI1238 6988223 YP_002262264.1 CDS tadA NC_011312.1 835031 835564 D tRNA-specific adenosine deaminase 835031..835564 Aliivibrio salmonicida LFI1238 6986634 YP_002262265.1 CDS VSAL_I0749 NC_011312.1 835973 837457 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase complement(835973..837457) Aliivibrio salmonicida LFI1238 6989272 YP_002262266.1 CDS purL NC_011312.1 837821 841750 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 837821..841750 Aliivibrio salmonicida LFI1238 6986635 YP_002262267.1 CDS VSAL_I0751 NC_011312.1 841969 842460 D Possible alternative translational start site after codon 7; hypothetical protein 841969..842460 Aliivibrio salmonicida LFI1238 6989041 YP_002262268.1 CDS VSAL_I0752 NC_011312.1 842457 842660 D hypothetical protein 842457..842660 Aliivibrio salmonicida LFI1238 6986636 YP_002262269.1 CDS VSAL_I0753 NC_011312.1 842678 842953 R hypothetical protein complement(842678..842953) Aliivibrio salmonicida LFI1238 6986637 YP_002262270.1 CDS VSAL_I0754 NC_011312.1 843130 843645 D rRNA methylase (SpoU_methylase) 843130..843645 Aliivibrio salmonicida LFI1238 6986638 YP_002262271.1 CDS VSAL_I0755 NC_011312.1 843716 844252 D membrane protein 843716..844252 Aliivibrio salmonicida LFI1238 6986639 YP_002262272.1 CDS VSAL_I0756 NC_011312.1 844660 844986 D hypothetical protein 844660..844986 Aliivibrio salmonicida LFI1238 6986640 YP_002262273.1 CDS chiA NC_011312.1 845055 847595 R Expression may be regulated by Fur; endochitinase ChiA complement(845055..847595) Aliivibrio salmonicida LFI1238 6986641 YP_002262274.1 CDS VSAL_I0758 NC_011312.1 847796 848317 D hypothetical protein 847796..848317 Aliivibrio salmonicida LFI1238 6988325 YP_002262275.1 CDS VSAL_I0759 NC_011312.1 848387 849481 R hypothetical protein complement(848387..849481) Aliivibrio salmonicida LFI1238 6986642 YP_002262276.1 CDS rimK NC_011312.1 849441 850346 R ribosomal protein S6 modification protein complement(849441..850346) Aliivibrio salmonicida LFI1238 6986643 YP_002262277.1 CDS VSAL_I0761 NC_011312.1 850346 850786 R hypothetical protein complement(850346..850786) Aliivibrio salmonicida LFI1238 6989104 YP_002262278.1 CDS VSAL_I0762 NC_011312.1 851281 852645 D sodium-dependent transporter 851281..852645 Aliivibrio salmonicida LFI1238 6986644 YP_002262279.1 CDS VSAL_I0766 NC_011312.1 855265 855579 R transposase complement(855265..855579) Aliivibrio salmonicida LFI1238 6986647 YP_002262280.1 CDS VSAL_I0768 NC_011312.1 855807 856337 R phage protein complement(855807..856337) Aliivibrio salmonicida LFI1238 6986649 YP_002262281.1 CDS VSAL_I0769 NC_011312.1 856328 856801 R phage protein complement(856328..856801) Aliivibrio salmonicida LFI1238 6986650 YP_002262282.1 CDS VSAL_I0770 NC_011312.1 856805 857263 R phage protein complement(856805..857263) Aliivibrio salmonicida LFI1238 6986651 YP_002262283.1 CDS VSAL_I0771 NC_011312.1 857360 858394 R phage major capsid protein complement(857360..858394) Aliivibrio salmonicida LFI1238 6986652 YP_002262284.1 CDS VSAL_I0772 NC_011312.1 858446 859318 R Similar to Bacteriophage HP1 capsid scaffolding protein UniProt:P51719 (298 aa) fasta scores: E()=1e-15, 32.740% id in 281 aa; capsid scaffolding protein complement(858446..859318) Aliivibrio salmonicida LFI1238 6986653 YP_002262285.1 CDS VSAL_I0773 NC_011312.1 859448 861244 D bacteriophage terminase 859448..861244 Aliivibrio salmonicida LFI1238 6986654 YP_002262286.1 CDS VSAL_I0775 NC_011312.1 862454 863467 R phage protein complement(862454..863467) Aliivibrio salmonicida LFI1238 6986656 YP_002262287.1 CDS VSAL_I0777 NC_011312.1 864223 864978 R N-acetylmuramoyl-L-alanine amidase complement(864223..864978) Aliivibrio salmonicida LFI1238 6986658 YP_002262288.1 CDS VSAL_I0778 NC_011312.1 865267 865629 R phage protein complement(865267..865629) Aliivibrio salmonicida LFI1238 6986659 YP_002262289.1 CDS VSAL_I0779 NC_011312.1 865634 865804 R membrane protein, phage gene complement(865634..865804) Aliivibrio salmonicida LFI1238 6986660 YP_002262290.1 CDS VSAL_I0780 NC_011312.1 865839 866237 R membrane protein, phage gene complement(865839..866237) Aliivibrio salmonicida LFI1238 6986661 YP_002262291.1 CDS VSAL_I0781 NC_011312.1 866373 866687 D transposase 866373..866687 Aliivibrio salmonicida LFI1238 6986662 YP_002262292.1 CDS VSAL_I0782 NC_011312.1 866684 867031 D transposase 866684..867031 Aliivibrio salmonicida LFI1238 6986663 YP_002262293.1 CDS VSAL_I0783 NC_011312.1 867103 868590 D transposase 867103..868590 Aliivibrio salmonicida LFI1238 6986664 YP_002262294.1 CDS engD NC_011312.1 870657 871748 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(870657..871748) Aliivibrio salmonicida LFI1238 6988140 YP_002262295.1 CDS pth NC_011312.1 871768 872358 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(871768..872358) Aliivibrio salmonicida LFI1238 6988441 YP_002262296.1 CDS prs NC_011312.1 872539 873537 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(872539..873537) Aliivibrio salmonicida LFI1238 6989027 YP_002262297.1 CDS ipk NC_011312.1 873525 874391 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(873525..874391) Aliivibrio salmonicida LFI1238 6989016 YP_002262298.1 CDS lolB NC_011312.1 874388 874999 R Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB complement(874388..874999) Aliivibrio salmonicida LFI1238 6988726 YP_002262299.1 CDS hemA NC_011312.1 875199 876455 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 875199..876455 Aliivibrio salmonicida LFI1238 6986666 YP_002262300.1 CDS prfA NC_011312.1 876495 877583 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 876495..877583 Aliivibrio salmonicida LFI1238 6988640 YP_002262301.1 CDS hemK NC_011312.1 877583 878449 D protein methyltransferase HemK 877583..878449 Aliivibrio salmonicida LFI1238 6989003 YP_002262302.1 CDS VSAL_I0792 NC_011312.1 878453 878833 D protein SirB, invasion gene expression up-regulator 878453..878833 Aliivibrio salmonicida LFI1238 6988647 YP_002262303.1 CDS VSAL_I0793 NC_011312.1 878836 879645 D protein SirB1 878836..879645 Aliivibrio salmonicida LFI1238 6986667 YP_002262304.1 CDS kdsA NC_011312.1 879657 880511 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 879657..880511 Aliivibrio salmonicida LFI1238 6986668 YP_002262305.1 CDS cysG NC_011312.1 880601 881428 R The CDS appears to be truncated at the N-terminus in comparison to orthologues. Although other vibrio orthologues are found to be of similar size; siroheme synthase complement(880601..881428) Aliivibrio salmonicida LFI1238 6988733 YP_002262306.1 CDS VSAL_I0796 NC_011312.1 881524 882336 R formate/nitrite transporter complement(881524..882336) Aliivibrio salmonicida LFI1238 6988375 YP_002262307.1 CDS nirD NC_011312.1 882434 882763 R involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit complement(882434..882763) Aliivibrio salmonicida LFI1238 6986669 YP_002262308.1 CDS nirB NC_011312.1 882766 885342 R nitrite reductase (NAD(P)H) large subunit complement(882766..885342) Aliivibrio salmonicida LFI1238 6988898 YP_002262309.1 CDS VSAL_I0799 NC_011312.1 885635 887509 R methyl-accepting chemotaxis protein complement(885635..887509) Aliivibrio salmonicida LFI1238 6988897 YP_002262310.1 CDS ushA NC_011312.1 887932 889593 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 887932..889593 Aliivibrio salmonicida LFI1238 6986670 YP_002262311.1 CDS VSAL_I0801 NC_011312.1 889989 890423 R hypothetical protein complement(889989..890423) Aliivibrio salmonicida LFI1238 6988141 YP_002262312.1 CDS copA NC_011312.1 890523 893231 R CDS is extended at the N-terminus in comparison to orthologues other than vibrio orthologues; copper-transporting P-type ATPase complement(890523..893231) Aliivibrio salmonicida LFI1238 6986671 YP_002262313.1 CDS cueR NC_011312.1 893319 893717 D HTH-type transcriptional regulator CueR (copper export regulator) 893319..893717 Aliivibrio salmonicida LFI1238 6988345 YP_002262314.1 CDS VSAL_I0804 NC_011312.1 893742 894596 R thioredoxin complement(893742..894596) Aliivibrio salmonicida LFI1238 6988362 YP_002262315.1 CDS VSAL_I0805 NC_011312.1 894931 895758 R short chain dehydrogenase complement(894931..895758) Aliivibrio salmonicida LFI1238 6986672 YP_002262316.1 CDS VSAL_I0806 NC_011312.1 895887 896792 R NAD dependent epimerase/dehydratase complement(895887..896792) Aliivibrio salmonicida LFI1238 6986673 YP_002262317.1 CDS yfcE NC_011312.1 896899 897480 D phosphodiesterase 896899..897480 Aliivibrio salmonicida LFI1238 6986674 YP_002262318.1 CDS VSAL_I0809 NC_011312.1 898508 898819 D transposase 898508..898819 Aliivibrio salmonicida LFI1238 6989431 YP_002262319.1 CDS VSAL_I0810 NC_011312.1 898816 899163 D transposase 898816..899163 Aliivibrio salmonicida LFI1238 6986675 YP_002262320.1 CDS VSAL_I0811 NC_011312.1 899235 900722 D transposase 899235..900722 Aliivibrio salmonicida LFI1238 6986676 YP_002262321.1 CDS toxS NC_011312.1 901288 901833 R transmembrane regulatory protein ToxS complement(901288..901833) Aliivibrio salmonicida LFI1238 6986677 YP_002262322.1 CDS htpG NC_011312.1 902909 904807 D molecular chaperone; heat shock protein 90 902909..904807 Aliivibrio salmonicida LFI1238 6989314 YP_002262323.1 CDS adk NC_011312.1 905084 905731 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 905084..905731 Aliivibrio salmonicida LFI1238 6988688 YP_002262324.1 CDS hemH NC_011312.1 905815 906783 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 905815..906783 Aliivibrio salmonicida LFI1238 6988225 YP_002262325.1 CDS tig NC_011312.1 907133 908431 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 907133..908431 Aliivibrio salmonicida LFI1238 6988646 YP_002262326.1 CDS clpP NC_011312.1 908532 909155 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 908532..909155 Aliivibrio salmonicida LFI1238 6989297 YP_002262327.1 CDS tnpR NC_011312.1 910404 911612 D transposase 910404..911612 Aliivibrio salmonicida LFI1238 6988142 YP_002262328.1 CDS lon NC_011312.1 912000 914363 D ATP-dependent protease LA 912000..914363 Aliivibrio salmonicida LFI1238 6989302 YP_002262329.1 CDS hupB NC_011312.1 914503 914799 D Possible alternative translational start site after codon 8; DNA-binding protein HU-beta 914503..914799 Aliivibrio salmonicida LFI1238 6988755 YP_002262330.1 CDS VSAL_I0823 NC_011312.1 915001 916857 D peptidyl-prolyl cis-trans isomerase D 915001..916857 Aliivibrio salmonicida LFI1238 6988691 YP_002262331.1 CDS VSAL_I0824 NC_011312.1 917063 917359 D Expression may be regulated by Fur; hypothetical protein 917063..917359 Aliivibrio salmonicida LFI1238 6986678 YP_002262332.1 CDS VSAL_I0825 NC_011312.1 917450 918805 R di-/tripeptide transporter complement(917450..918805) Aliivibrio salmonicida LFI1238 6986679 YP_002262333.1 CDS rfaH NC_011312.1 919200 919697 D transcriptional activator RfaH 919200..919697 Aliivibrio salmonicida LFI1238 6986680 YP_002262334.1 CDS asnB NC_011312.1 919744 921411 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(919744..921411) Aliivibrio salmonicida LFI1238 6989089 YP_002262335.1 CDS VSAL_I0828 NC_011312.1 921693 923276 R sodium/hydrogen antiporter complement(921693..923276) Aliivibrio salmonicida LFI1238 6988269 YP_002262336.1 CDS nagC NC_011312.1 923355 924569 R N-acetylglucosamine repressor complement(923355..924569) Aliivibrio salmonicida LFI1238 6986681 YP_002262337.1 CDS nagA NC_011312.1 924571 925707 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(924571..925707) Aliivibrio salmonicida LFI1238 6988879 YP_002262338.1 CDS nagE NC_011312.1 926109 927599 D PTS permease for N-acetylglucosamine and glucose 926109..927599 Aliivibrio salmonicida LFI1238 6988877 YP_002262339.1 CDS glnS NC_011312.1 927768 929426 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 927768..929426 Aliivibrio salmonicida LFI1238 6988880 YP_002262340.1 CDS fur NC_011312.1 929500 929943 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(929500..929943) Aliivibrio salmonicida LFI1238 6988598 YP_002262341.1 CDS VSAL_I0834 NC_011312.1 930125 930589 D hypothetical protein 930125..930589 Aliivibrio salmonicida LFI1238 6988576 YP_002262342.1 CDS fldA NC_011312.1 930627 931154 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(930627..931154) Aliivibrio salmonicida LFI1238 6986682 YP_002262343.1 CDS VSAL_I0836 NC_011312.1 931214 931435 R hypothetical protein complement(931214..931435) Aliivibrio salmonicida LFI1238 6988514 YP_002262344.1 CDS VSAL_I0837 NC_011312.1 931522 932298 R Expression may be stress-induced; esterase complement(931522..932298) Aliivibrio salmonicida LFI1238 6986683 YP_002262345.1 CDS seqA NC_011312.1 932392 932934 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 932392..932934 Aliivibrio salmonicida LFI1238 6986684 YP_002262346.1 CDS pgm NC_011312.1 932983 934629 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 932983..934629 Aliivibrio salmonicida LFI1238 6989238 YP_002262347.1 CDS VSAL_I0840 NC_011312.1 934715 935470 D hypothetical protein 934715..935470 Aliivibrio salmonicida LFI1238 6988966 YP_002262348.1 CDS gltA NC_011312.1 935590 936879 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(935590..936879) Aliivibrio salmonicida LFI1238 6986685 YP_002262349.1 CDS sdhC NC_011312.1 937266 937667 D succinate dehydrogenase cytochrome b556 large membrane subunit 937266..937667 Aliivibrio salmonicida LFI1238 6988605 YP_002262350.1 CDS sdhD NC_011312.1 937661 938008 D succinate dehydrogenase hydrophobic membrane anchor protein 937661..938008 Aliivibrio salmonicida LFI1238 6989228 YP_002262351.1 CDS sdhA NC_011312.1 938005 939774 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 938005..939774 Aliivibrio salmonicida LFI1238 6989229 YP_002262352.1 CDS sdhB NC_011312.1 939789 940502 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 939789..940502 Aliivibrio salmonicida LFI1238 6989226 YP_002262353.1 CDS sucA NC_011312.1 940625 943441 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 940625..943441 Aliivibrio salmonicida LFI1238 6989227 YP_002262354.1 CDS sucB NC_011312.1 943461 944672 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 943461..944672 Aliivibrio salmonicida LFI1238 6989263 YP_002262355.1 CDS sucC NC_011312.1 944824 945990 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 944824..945990 Aliivibrio salmonicida LFI1238 6989264 YP_002262356.1 CDS sucD NC_011312.1 945990 946862 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 945990..946862 Aliivibrio salmonicida LFI1238 6989265 YP_002262357.1 CDS znuB NC_011312.1 946963 947748 R high-affinity zinc uptake system membrane protein ZnuB complement(946963..947748) Aliivibrio salmonicida LFI1238 6989266 YP_002262358.1 CDS znuC NC_011312.1 947745 948515 R Expression may be regulated by Fur; high-affinity zinc uptake system atp-binding protein ZnuC complement(947745..948515) Aliivibrio salmonicida LFI1238 6989442 YP_002262359.1 CDS znuA NC_011312.1 948604 949497 D high-affinity zinc uptake system protein ZnuA precursor 948604..949497 Aliivibrio salmonicida LFI1238 6989443 YP_002262360.1 CDS VSAL_I0853 NC_011312.1 949494 950834 D CDS contanins a rare Isoleucine start codon (ATA); peptidase 949494..950834 Aliivibrio salmonicida LFI1238 6989441 YP_002262361.1 CDS VSAL_I0854 NC_011312.1 950894 951664 R hypothetical protein complement(950894..951664) Aliivibrio salmonicida LFI1238 6986686 YP_002262362.1 CDS tyrS NC_011312.1 952023 953303 D tyrosyl-tRNA synthetase 952023..953303 Aliivibrio salmonicida LFI1238 6986687 YP_002262363.1 CDS VSAL_I0856 NC_011312.1 953440 955812 R Expression may be stress-induced; hypothetical protein complement(953440..955812) Aliivibrio salmonicida LFI1238 6989346 YP_002262364.1 CDS dcuC NC_011312.1 956160 957527 R responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC complement(956160..957527) Aliivibrio salmonicida LFI1238 6986688 YP_002262365.1 CDS VSAL_I0858 NC_011312.1 957853 958560 D membrane protein 957853..958560 Aliivibrio salmonicida LFI1238 6988398 YP_002262366.1 CDS VSAL_I0859 NC_011312.1 958628 958822 D Similar to Vibrio vulnificus Hypothetical protein UniProt:Q8DAI1 (76 aa) fasta scores: E()=2e-12, 68.254% id in 63 aa overlap; query 1-63; subject 11-73. Expression may be stress-induced. The CDS may be truncated at the N-terminus; hypothetical protein 958628..958822 Aliivibrio salmonicida LFI1238 6986689 YP_002262367.1 CDS metR NC_011312.1 958840 959751 R transcriptional activator MetR complement(958840..959751) Aliivibrio salmonicida LFI1238 6986690 YP_002262368.1 CDS VSAL_I0862 NC_011312.1 960370 961251 D transposase 960370..961251 Aliivibrio salmonicida LFI1238 6988790 YP_002262369.1 CDS glyA NC_011312.1 965183 966433 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(965183..966433) Aliivibrio salmonicida LFI1238 6986692 YP_002262370.1 CDS VSAL_I0865 NC_011312.1 966748 967356 D Expression may be stress-induced; ABC transporter permease 966748..967356 Aliivibrio salmonicida LFI1238 6988609 YP_002262371.1 CDS VSAL_I0866 NC_011312.1 967429 967755 R Expression may be stress-induced; lipoprotein complement(967429..967755) Aliivibrio salmonicida LFI1238 6986693 YP_002262372.1 CDS dppD NC_011312.1 968844 969854 R dipeptide transport ATP-binding protein DppD complement(968844..969854) Aliivibrio salmonicida LFI1238 6986695 YP_002262373.1 CDS VSAL_I0869 NC_011312.1 969878 971758 R Similar to Bacillus subtilis oligopeptide-binding protein AppA (PDB 1XOC). Evalue=4e-12, identity=(100, 479); extracellular solute-binding protein complement(969878..971758) Aliivibrio salmonicida LFI1238 6988422 YP_002262374.1 CDS yejE NC_011312.1 971751 972803 R ABC transporter permease complement(971751..972803) Aliivibrio salmonicida LFI1238 6986696 YP_002262375.1 CDS yejB NC_011312.1 972806 973834 R inner membrane ABC transporter permease protein complement(972806..973834) Aliivibrio salmonicida LFI1238 6989430 YP_002262376.1 CDS VSAL_I0872 NC_011312.1 974090 974266 R hypothetical protein complement(974090..974266) Aliivibrio salmonicida LFI1238 6989429 YP_002262377.1 CDS VSAL_I0873 NC_011312.1 974411 975142 R hypothetical protein complement(974411..975142) Aliivibrio salmonicida LFI1238 6986697 YP_002262378.1 CDS VSAL_I0874 NC_011312.1 975139 976839 R hypothetical protein complement(975139..976839) Aliivibrio salmonicida LFI1238 6986698 YP_002262379.1 CDS VSAL_I0875 NC_011312.1 976947 978521 R CDS is extended at the N-terminus in comparison to the Bacillus subtilis orthologue; glycine betaine transporter OpuD complement(976947..978521) Aliivibrio salmonicida LFI1238 6986699 YP_002262380.1 CDS VSAL_I0876 NC_011312.1 978620 979609 R membrane dipeptidase complement(978620..979609) Aliivibrio salmonicida LFI1238 6986700 YP_002262381.1 CDS VSAL_I0877 NC_011312.1 979666 981129 R aldehyde dehydrogenase complement(979666..981129) Aliivibrio salmonicida LFI1238 6986701 YP_002262382.1 CDS VSAL_I0878 NC_011312.1 981216 981599 R Expression may be stress-induced; endoribonuclease L-PSP complement(981216..981599) Aliivibrio salmonicida LFI1238 6986702 YP_002262383.1 CDS VSAL_I0879 NC_011312.1 981768 982646 D LysR family transcriptional regulator 981768..982646 Aliivibrio salmonicida LFI1238 6986703 YP_002262384.1 CDS VSAL_I0880 NC_011312.1 982878 983096 D hypothetical protein 982878..983096 Aliivibrio salmonicida LFI1238 6986704 YP_002262385.1 CDS VSAL_I0881 NC_011312.1 983209 983985 R hypothetical protein complement(983209..983985) Aliivibrio salmonicida LFI1238 6986705 YP_002262386.1 CDS VSAL_I0882 NC_011312.1 984010 984765 R hypothetical protein complement(984010..984765) Aliivibrio salmonicida LFI1238 6986706 YP_002262387.1 CDS VSAL_I0883 NC_011312.1 984783 987374 R Expression may be regulated by Fur. No significant database matches; hypothetical protein complement(984783..987374) Aliivibrio salmonicida LFI1238 6986707 YP_002262388.1 CDS VSAL_I0884 NC_011312.1 987481 987894 R Expression may be regulated by Fur; hypothetical protein complement(987481..987894) Aliivibrio salmonicida LFI1238 6986708 YP_002262389.1 CDS gmhB NC_011312.1 988174 988725 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(988174..988725) Aliivibrio salmonicida LFI1238 6986709 YP_002262390.1 CDS metN NC_011312.1 988979 990013 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 988979..990013 Aliivibrio salmonicida LFI1238 6988613 YP_002262391.1 CDS metI NC_011312.1 990003 990680 D D-methionine transport system permease protein MetI 990003..990680 Aliivibrio salmonicida LFI1238 6988799 YP_002262392.1 CDS metQ NC_011312.1 990725 991534 D DL-methionine transporter substrate-binding subunit 990725..991534 Aliivibrio salmonicida LFI1238 6988795 YP_002262393.1 CDS VSAL_I0889 NC_011312.1 991596 991733 R 50S ribosomal protein L36 complement(991596..991733) Aliivibrio salmonicida LFI1238 6988800 YP_002262394.1 CDS rpmE2 NC_011312.1 991733 991990 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(991733..991990) Aliivibrio salmonicida LFI1238 6986710 YP_002262395.1 CDS VSAL_I0891 NC_011312.1 992134 992832 D Expression may be regulated by Fur; hypothetical protein 992134..992832 Aliivibrio salmonicida LFI1238 6989174 YP_002262396.1 CDS proS NC_011312.1 992979 994694 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 992979..994694 Aliivibrio salmonicida LFI1238 6986711 YP_002262397.1 CDS VSAL_I0893 NC_011312.1 994766 995236 R hypothetical protein complement(994766..995236) Aliivibrio salmonicida LFI1238 6989015 YP_002262398.1 CDS VSAL_I0895 NC_011312.1 996870 997184 D transposase 996870..997184 Aliivibrio salmonicida LFI1238 6986713 YP_002262399.1 CDS VSAL_I0896 NC_011312.1 997181 997528 D transposase 997181..997528 Aliivibrio salmonicida LFI1238 6986714 YP_002262400.1 CDS VSAL_I0898 NC_011312.1 999132 1000010 R Expression may be stress-induced. Probably regulator of genes involved in synthesis of phosphosugars; RpiR family transcriptional regulator complement(999132..1000010) Aliivibrio salmonicida LFI1238 6986716 YP_002262401.1 CDS VSAL_I0899 NC_011312.1 1000299 1001192 D dihydropicolinate synthase 1000299..1001192 Aliivibrio salmonicida LFI1238 6986717 YP_002262402.1 CDS VSAL_I0900 NC_011312.1 1001328 1001546 D Expression may be regulated by Fur; hypothetical protein 1001328..1001546 Aliivibrio salmonicida LFI1238 6986718 YP_002262403.1 CDS VSAL_I0901 NC_011312.1 1001546 1001734 D hypothetical protein 1001546..1001734 Aliivibrio salmonicida LFI1238 6986719 YP_002262404.1 CDS VSAL_I0903 NC_011312.1 1003914 1004228 D transposase 1003914..1004228 Aliivibrio salmonicida LFI1238 6988327 YP_002262405.1 CDS VSAL_I0904 NC_011312.1 1004225 1004572 D transposase 1004225..1004572 Aliivibrio salmonicida LFI1238 6986721 YP_002262406.1 CDS VSAL_I0907 NC_011312.1 1007807 1008676 R hydrolase complement(1007807..1008676) Aliivibrio salmonicida LFI1238 6988474 YP_002262407.1 CDS VSAL_I0908 NC_011312.1 1008683 1009240 R outer membrane lipoprotein, Slp family complement(1008683..1009240) Aliivibrio salmonicida LFI1238 6986724 YP_002262408.1 CDS VSAL_I0909 NC_011312.1 1009256 1009555 R hypothetical protein complement(1009256..1009555) Aliivibrio salmonicida LFI1238 6986725 YP_002262409.1 CDS VSAL_I0910 NC_011312.1 1009618 1010319 R glycoprotease complement(1009618..1010319) Aliivibrio salmonicida LFI1238 6986726 YP_002262410.1 CDS VSAL_I0911 NC_011312.1 1010327 1012282 R Similar to Escherichia coli ATP-dependent helicase YoaA UniProt:P76257 (636 aa) fasta scores: E()=5.9e-163, 65.714% id in 630 aa; ATP-dependent helicase complement(1010327..1012282) Aliivibrio salmonicida LFI1238 6986727 YP_002262411.1 CDS purU NC_011312.1 1012702 1013535 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1012702..1013535 Aliivibrio salmonicida LFI1238 6986728 YP_002262412.1 CDS VSAL_I0913 NC_011312.1 1013608 1014405 R hypothetical protein complement(1013608..1014405) Aliivibrio salmonicida LFI1238 6989046 YP_002262413.1 CDS VSAL_I0914 NC_011312.1 1014523 1014720 R No significant database matches. Doubtful CDS, poor translational start site; hypothetical protein complement(1014523..1014720) Aliivibrio salmonicida LFI1238 6986729 YP_002262414.1 CDS VSAL_I0915 NC_011312.1 1014975 1015133 D membrane protein 1014975..1015133 Aliivibrio salmonicida LFI1238 6986730 YP_002262415.1 CDS VSAL_I0917 NC_011312.1 1015660 1016541 R transposase complement(1015660..1016541) Aliivibrio salmonicida LFI1238 6988791 YP_002262416.1 CDS VSAL_I0919 NC_011312.1 1017599 1017925 R lipoprotein complement(1017599..1017925) Aliivibrio salmonicida LFI1238 6988217 YP_002262417.1 CDS VSAL_I0920 NC_011312.1 1018025 1020013 R nitrate and nitrite sensing methyl-accepting chemotaxis protein complement(1018025..1020013) Aliivibrio salmonicida LFI1238 6986733 YP_002262418.1 CDS nrdR NC_011312.1 1020181 1020630 D transcriptional regulator NrdR 1020181..1020630 Aliivibrio salmonicida LFI1238 6986734 YP_002262419.1 CDS ribD NC_011312.1 1020632 1021753 D pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) 1020632..1021753 Aliivibrio salmonicida LFI1238 6989102 YP_002262420.1 CDS ribC NC_011312.1 1021757 1022413 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1021757..1022413 Aliivibrio salmonicida LFI1238 6989098 YP_002262421.1 CDS ribBA NC_011312.1 1022450 1023559 D 3,4-dihydroxy-2-butanone 4-phosphate synthase 1022450..1023559 Aliivibrio salmonicida LFI1238 6989097 YP_002262422.1 CDS ribH NC_011312.1 1023709 1024179 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1023709..1024179 Aliivibrio salmonicida LFI1238 6989096 YP_002262423.1 CDS nusB NC_011312.1 1024179 1024646 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1024179..1024646 Aliivibrio salmonicida LFI1238 6989101 YP_002262424.1 CDS thiL NC_011312.1 1024736 1025728 D thiamine-monophosphate kinase 1024736..1025728 Aliivibrio salmonicida LFI1238 6988926 YP_002262425.1 CDS pgpA NC_011312.1 1025731 1026234 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 1025731..1026234 Aliivibrio salmonicida LFI1238 6989288 YP_002262426.1 CDS luxQ NC_011312.1 1027355 1029592 D The CDS appears to have a deletion of around 150 amino acid residues after codon 346 in comparison to the Vibrio cholerae orthologue; autoinducer 2 sensor kinase/phosphatase LuxQ 1027355..1029592 Aliivibrio salmonicida LFI1238 6988765 YP_002262427.1 CDS VSAL_I0931 NC_011312.1 1029589 1029864 R hypothetical protein complement(1029589..1029864) Aliivibrio salmonicida LFI1238 6988766 YP_002262428.1 CDS VSAL_I0932 NC_011312.1 1029953 1030303 D antibiotic biosynthesis monooxygenase 1029953..1030303 Aliivibrio salmonicida LFI1238 6986735 YP_002262429.1 CDS dxs NC_011312.1 1030373 1032256 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1030373..1032256) Aliivibrio salmonicida LFI1238 6986736 YP_002262430.1 CDS ispA NC_011312.1 1032279 1033175 R geranyltranstransferase complement(1032279..1033175) Aliivibrio salmonicida LFI1238 6988435 YP_002262431.1 CDS xseB NC_011312.1 1033168 1033410 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1033168..1033410) Aliivibrio salmonicida LFI1238 6988723 YP_002262432.1 CDS motA NC_011312.1 1033690 1034454 D Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 1033690..1034454 Aliivibrio salmonicida LFI1238 6989421 YP_002262433.1 CDS motB NC_011312.1 1034469 1035398 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 1034469..1035398 Aliivibrio salmonicida LFI1238 6988821 YP_002262434.1 CDS thiI NC_011312.1 1035565 1037013 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1035565..1037013 Aliivibrio salmonicida LFI1238 6988822 YP_002262435.1 CDS VSAL_I0939 NC_011312.1 1037075 1037992 R LysR family transcriptional regulator complement(1037075..1037992) Aliivibrio salmonicida LFI1238 6989286 YP_002262436.1 CDS VSAL_I0940 NC_011312.1 1038067 1039011 D integral membrane protein 1038067..1039011 Aliivibrio salmonicida LFI1238 6986737 YP_002262437.1 CDS thiJ NC_011312.1 1039081 1039671 R protein ThiJ complement(1039081..1039671) Aliivibrio salmonicida LFI1238 6986738 YP_002262438.1 CDS panE NC_011312.1 1039668 1040567 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(1039668..1040567) Aliivibrio salmonicida LFI1238 6989287 YP_002262439.1 CDS VSAL_I0944 NC_011312.1 1041789 1043132 R MSF transporter complement(1041789..1043132) Aliivibrio salmonicida LFI1238 6988929 YP_002262440.1 CDS rotA NC_011312.1 1043240 1043797 R peptidyl-prolyl cis-trans isomerase precursor complement(1043240..1043797) Aliivibrio salmonicida LFI1238 6986739 YP_002262441.1 CDS VSAL_I0946 NC_011312.1 1043800 1044369 R lipoprotein complement(1043800..1044369) Aliivibrio salmonicida LFI1238 6989142 YP_002262442.1 CDS VSAL_I0947 NC_011312.1 1044383 1045531 R Weakly similar to Escherichia coli.; rsmC; Ribosomal RNA small subunit methyltransferase C (P39406); length=342; id 28.620%; ungapped id 30.249%; E()=4.9e-13; 297 aa overlap; query 125-418; subject 57-340; methyltransferase complement(1044383..1045531) Aliivibrio salmonicida LFI1238 6986740 YP_002262443.1 CDS bolA NC_011312.1 1045625 1045939 D BolA protein 1045625..1045939 Aliivibrio salmonicida LFI1238 6986741 YP_002262444.1 CDS nqrA NC_011312.1 1046336 1047676 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1046336..1047676 Aliivibrio salmonicida LFI1238 6988293 YP_002262445.1 CDS nqrB NC_011312.1 1047680 1048924 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1047680..1048924 Aliivibrio salmonicida LFI1238 6988907 YP_002262446.1 CDS nqrC NC_011312.1 1048914 1049684 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1048914..1049684 Aliivibrio salmonicida LFI1238 6988908 YP_002262447.1 CDS nqrD NC_011312.1 1049684 1050313 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1049684..1050313 Aliivibrio salmonicida LFI1238 6988909 YP_002262448.1 CDS nqrE NC_011312.1 1050321 1050917 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1050321..1050917 Aliivibrio salmonicida LFI1238 6988910 YP_002262449.1 CDS nqrF NC_011312.1 1050947 1052173 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1050947..1052173 Aliivibrio salmonicida LFI1238 6988911 YP_002262450.1 CDS VSAL_I0955 NC_011312.1 1052339 1053376 D thiamine biosynthesis lipoprotein ApbE 1052339..1053376 Aliivibrio salmonicida LFI1238 6988912 YP_002262451.1 CDS VSAL_I0956 NC_011312.1 1053388 1053621 D hypothetical protein 1053388..1053621 Aliivibrio salmonicida LFI1238 6986742 YP_002262452.1 CDS dinB NC_011312.1 1053775 1054689 D DNA polymerase IV 1053775..1054689 Aliivibrio salmonicida LFI1238 6986743 YP_002262453.1 CDS VSAL_I0959 NC_011312.1 1055612 1056493 D transposase 1055612..1056493 Aliivibrio salmonicida LFI1238 6986744 YP_002262454.1 CDS ahdIC NC_011312.1 1057929 1058141 R c.ahdi; DNA methyltransferase complement(1057929..1058141) Aliivibrio salmonicida LFI1238 6986745 YP_002262455.1 CDS VSAL_I0961 NC_011312.1 1058250 1058786 D hypothetical protein 1058250..1058786 Aliivibrio salmonicida LFI1238 6988226 YP_002262456.1 CDS VSAL_I0962 NC_011312.1 1058783 1060183 D type III restriction enzyme 1058783..1060183 Aliivibrio salmonicida LFI1238 6986746 YP_002262457.1 CDS VSAL_I0963 NC_011312.1 1060435 1061100 R hypothetical protein complement(1060435..1061100) Aliivibrio salmonicida LFI1238 6986747 YP_002262458.1 CDS dinB NC_011312.1 1063619 1064671 R DNA polymerase IV complement(1063619..1064671) Aliivibrio salmonicida LFI1238 6986749 YP_002262459.1 CDS VSAL_I0966 NC_011312.1 1064843 1066204 R Similar to Bacillus subtilis Tyrosine recombinase XerC UniProt:P39776 (304 aa) blastp scores: E()=3e-04. Lack of similarity at the N-terminus in comparison to other proteins; phage recombinase/integrase complement(1064843..1066204) Aliivibrio salmonicida LFI1238 6988408 YP_002262460.1 CDS VSAL_I0967 NC_011312.1 1066206 1066727 R phage protein complement(1066206..1066727) Aliivibrio salmonicida LFI1238 6986750 YP_002262461.1 CDS VSAL_I0968 NC_011312.1 1066728 1069151 R Weakly similar to Pseudomonas syringae pv. tomato site-specific recombinase, phage integrase family domain protein. UniProt:Q87W32 (EMBL:AE016853) (698 aa) fasta scores: E()=1e-14, 26.775% id in 676 aa. Lack of similarity at both the N- and C-terminus in comparison to the Pseudomonas syringae pv. tomato site-specific recombinase; phage protein complement(1066728..1069151) Aliivibrio salmonicida LFI1238 6986751 YP_002262462.1 CDS VSAL_I0969 NC_011312.1 1069145 1071484 R phage protein complement(1069145..1071484) Aliivibrio salmonicida LFI1238 6986752 YP_002262463.1 CDS VSAL_I0972 NC_011312.1 1072345 1073226 R transposase complement(1072345..1073226) Aliivibrio salmonicida LFI1238 6986755 YP_002262464.1 CDS VSAL_I0973 NC_011312.1 1074320 1075774 R Expression may be regulated by Fur; aminoacyl-histidine dipeptidase complement(1074320..1075774) Aliivibrio salmonicida LFI1238 6986756 YP_002262465.1 CDS VSAL_I0974 NC_011312.1 1076578 1077870 D Expression may be regulated by Fur; membrane permease 1076578..1077870 Aliivibrio salmonicida LFI1238 6986757 YP_002262466.1 CDS gpt NC_011312.1 1077908 1078366 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 1077908..1078366 Aliivibrio salmonicida LFI1238 6986758 YP_002262467.1 CDS frsA NC_011312.1 1078525 1079766 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 1078525..1079766 Aliivibrio salmonicida LFI1238 6988621 YP_002262468.1 CDS proB NC_011312.1 1079931 1081040 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1079931..1081040 Aliivibrio salmonicida LFI1238 6986759 YP_002262469.1 CDS proA NC_011312.1 1081071 1082312 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1081071..1082312 Aliivibrio salmonicida LFI1238 6989012 YP_002262470.1 CDS lipA NC_011312.1 1082414 1083379 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1082414..1083379) Aliivibrio salmonicida LFI1238 6989011 YP_002262471.1 CDS lipB NC_011312.1 1083372 1084058 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(1083372..1084058) Aliivibrio salmonicida LFI1238 6988751 YP_002262472.1 CDS VSAL_I0981 NC_011312.1 1084196 1084465 R hypothetical protein complement(1084196..1084465) Aliivibrio salmonicida LFI1238 6988752 YP_002262473.1 CDS dacA NC_011312.1 1084621 1085796 R penicillin-binding protein 5 precursor (D-alanyl-D-alanin carboxypeptidase fraction A) complement(1084621..1085796) Aliivibrio salmonicida LFI1238 6986760 YP_002262474.1 CDS VSAL_I0983 NC_011312.1 1086079 1086888 R rare lipoprotein A complement(1086079..1086888) Aliivibrio salmonicida LFI1238 6988385 YP_002262475.1 CDS mrdB NC_011312.1 1086892 1088013 R rod shape-determining protein RodA complement(1086892..1088013) Aliivibrio salmonicida LFI1238 6986761 YP_002262476.1 CDS mrdA NC_011312.1 1088013 1089890 R penicillin-binding protein 2 complement(1088013..1089890) Aliivibrio salmonicida LFI1238 6988831 YP_002262477.1 CDS VSAL_I0986 NC_011312.1 1089894 1090364 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(1089894..1090364) Aliivibrio salmonicida LFI1238 6988830 YP_002262478.1 CDS VSAL_I0987 NC_011312.1 1090368 1090685 R hypothetical protein complement(1090368..1090685) Aliivibrio salmonicida LFI1238 6986762 YP_002262479.1 CDS holA NC_011312.1 1090734 1091771 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1090734..1091771) Aliivibrio salmonicida LFI1238 6986763 YP_002262480.1 CDS VSAL_I0989 NC_011312.1 1091774 1092406 R Lack of similarity at the N-terminus in comparison to other proteins; rare lipoprotein B complement(1091774..1092406) Aliivibrio salmonicida LFI1238 6988675 YP_002262481.1 CDS leuS NC_011312.1 1092574 1095150 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1092574..1095150) Aliivibrio salmonicida LFI1238 6986764 YP_002262482.1 CDS VSAL_I0991 NC_011312.1 1095318 1095800 D hypothetical protein 1095318..1095800 Aliivibrio salmonicida LFI1238 6988748 YP_002262483.1 CDS lnt NC_011312.1 1095871 1097376 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(1095871..1097376) Aliivibrio salmonicida LFI1238 6986765 YP_002262484.1 CDS VSAL_I0993 NC_011312.1 1097468 1098343 R hemolysin complement(1097468..1098343) Aliivibrio salmonicida LFI1238 6988754 YP_002262485.1 CDS VSAL_I0994 NC_011312.1 1098413 1098874 R metalloprotease complement(1098413..1098874) Aliivibrio salmonicida LFI1238 6986766 YP_002262486.1 CDS VSAL_I0995 NC_011312.1 1098896 1099966 R PhoH-like protein complement(1098896..1099966) Aliivibrio salmonicida LFI1238 6986767 YP_002262487.1 CDS VSAL_I0996 NC_011312.1 1100110 1101534 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1100110..1101534) Aliivibrio salmonicida LFI1238 6986768 YP_002262488.1 CDS ubiF NC_011312.1 1101750 1102907 D catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1101750..1102907 Aliivibrio salmonicida LFI1238 6986769 YP_002262489.1 CDS VSAL_I0998 NC_011312.1 1103104 1103418 D transposase 1103104..1103418 Aliivibrio salmonicida LFI1238 6989352 YP_002262490.1 CDS VSAL_I0999 NC_011312.1 1103415 1103762 D transposase 1103415..1103762 Aliivibrio salmonicida LFI1238 6986770 YP_002262491.1 CDS VSAL_I1001 NC_011312.1 1105138 1106331 R transposase complement(1105138..1106331) Aliivibrio salmonicida LFI1238 6986772 YP_002262492.1 CDS VSAL_I1003 NC_011312.1 1107542 1108141 R HTH-type transcriptional regulator complement(1107542..1108141) Aliivibrio salmonicida LFI1238 6986774 YP_002262493.1 CDS VSAL_I1004 NC_011312.1 1108316 1109266 D Possible alternative translational start site after codon 17; transporter 1108316..1109266 Aliivibrio salmonicida LFI1238 6986775 YP_002262494.1 CDS VSAL_I1005 NC_011312.1 1109413 1109643 D hypothetical protein 1109413..1109643 Aliivibrio salmonicida LFI1238 6986776 YP_002262495.1 CDS VSAL_I1006 NC_011312.1 1109644 1109895 R hypothetical protein complement(1109644..1109895) Aliivibrio salmonicida LFI1238 6986777 YP_002262496.1 CDS VSAL_I1007 NC_011312.1 1109923 1110495 D Possible alternative translational start site after codon 44; hypothetical protein 1109923..1110495 Aliivibrio salmonicida LFI1238 6986778 YP_002262497.1 CDS int NC_011312.1 1110598 1111641 R Similar to Bacteriophage 186 Integrase Int UniProt:P06723 (336 aa) fasta scores: E()=2.6e-53, 45.190% id in 343 aa; phage integrase complement(1110598..1111641) Aliivibrio salmonicida LFI1238 6986779 YP_002262498.1 CDS VSAL_I1009 NC_011312.1 1111704 1112492 R Similar to Vibrio phage K139 glo glo. UniProt:Q37932 (EMBL:AF125163) (137 aa) fasta scores: E()=1.7e-06, 28.814% id in 118 aa, and to Vibrio phage K139 glo glo. UniProt:Q37932 (EMBL:AF125163) (137 aa) fasta scores: E()=1.7e-06, 28.814% id in 118 aa. Lack of similarity at the N- and C-terminus in comparison to Vibrio phage K139 glo; exclusion protein complement(1111704..1112492) Aliivibrio salmonicida LFI1238 6988718 YP_002262499.1 CDS VSAL_I1010 NC_011312.1 1112515 1113471 R Similar to Vibrio phage K139 ci. UniProt:Q9XJF9 (EMBL:AF125163) (215 aa) fasta scores: E()=4.1e-21,47.257% id in 237 aa, and to Vibrio phage K139 ci. UniProt:Q9XJF9 (EMBL:AF125163) (215 aa) fasta scores: E()=4.1e-21, 47.257% id in 237 aa. Lack of similarity at the N-terminus in comparison to Vibrio phage K139 ci; phage regulatory protein CI complement(1112515..1113471) Aliivibrio salmonicida LFI1238 6986780 YP_002262500.1 CDS VSAL_I1011 NC_011312.1 1113644 1113844 D Weakly similar to Haemophilus phage HP2 orf2(s)cox UniProt:Q775G1 (70 aa) blastp scores: E()=0.020; phage regulatory protein 1113644..1113844 Aliivibrio salmonicida LFI1238 6986781 YP_002262501.1 CDS cII NC_011312.1 1113931 1114473 D phage regulatory protein CII 1113931..1114473 Aliivibrio salmonicida LFI1238 6986782 YP_002262502.1 CDS VSAL_I1013 NC_011312.1 1114483 1114806 D phage gene 1114483..1114806 Aliivibrio salmonicida LFI1238 6988329 YP_002262503.1 CDS VSAL_I1014 NC_011312.1 1114874 1115356 D phage protein 1114874..1115356 Aliivibrio salmonicida LFI1238 6986783 YP_002262504.1 CDS VSAL_I1015 NC_011312.1 1115353 1115754 D Weakly similar to Vibrio phage K139 orf5. UniProt:Q8W764 (EMBL:AF125163) (104 aa) blastp scores: E()=5.4; phage protein 1115353..1115754 Aliivibrio salmonicida LFI1238 6986784 YP_002262505.1 CDS VSAL_I1016 NC_011312.1 1115754 1115882 D phage protein 1115754..1115882 Aliivibrio salmonicida LFI1238 6986785 YP_002262506.1 CDS VSAL_I1017 NC_011312.1 1115885 1116157 D Weakly similar to Bacteriophage phi1026b gp41. UniProt:Q6JIJ0 (EMBL:AY453853) (85 aa) blastp scores: E()=0.22; phage protein 1115885..1116157 Aliivibrio salmonicida LFI1238 6986786 YP_002262507.1 CDS VSAL_I1018 NC_011312.1 1116160 1116390 D phage protein 1116160..1116390 Aliivibrio salmonicida LFI1238 6986787 YP_002262508.1 CDS VSAL_I1019 NC_011312.1 1116387 1116746 D phage protein 1116387..1116746 Aliivibrio salmonicida LFI1238 6986788 YP_002262509.1 CDS VSAL_I1020 NC_011312.1 1116746 1119259 D Similar to Bacteriophage 186 Replication gene A protein (gpa) UniProt:P41064 (694 aa) fasta scores: E()=1e-58, 36.631% id in 647 aa. Lack of similarity at the N-terminus in comparison to other proteins. CDS contains additional internal amino acids, residues 560 to 625, in comparison to Bacteriophage 186; phage replication protein 1116746..1119259 Aliivibrio salmonicida LFI1238 6986789 YP_002262510.1 CDS VSAL_I1021 NC_011312.1 1119368 1119751 D phage protein 1119368..1119751 Aliivibrio salmonicida LFI1238 6986790 YP_002262511.1 CDS VSAL_I1022 NC_011312.1 1119972 1120886 D membrane protein, phage gene 1119972..1120886 Aliivibrio salmonicida LFI1238 6986791 YP_002262512.1 CDS VSAL_I1023 NC_011312.1 1121087 1121341 D Expression may be Fur regulated; phage protein 1121087..1121341 Aliivibrio salmonicida LFI1238 6986792 YP_002262513.1 CDS VSAL_I1024 NC_011312.1 1121338 1121802 R Similar to Vibrio phage K139 orf13 orf13. UniProt:Q8W755 (EMBL:AF125163) (83 aa) fasta scores: E()=5.2e-14, 56.098% id in 82 aa; phage zinc-binding transcriptional activator complement(1121338..1121802) Aliivibrio salmonicida LFI1238 6986793 YP_002262514.1 CDS VSAL_I1025 NC_011312.1 1121868 1122902 R Similar to Vibrio phage K139 orf15 UniProt:Q8W753 (348 aa) fasta scores: E()=1.2e-85, 66.372% id in 339 aa; phage portal protein complement(1121868..1122902) Aliivibrio salmonicida LFI1238 6986794 YP_002262515.1 CDS VSAL_I1026 NC_011312.1 1122899 1124671 R Similar to Vibrio phage K139 orf16 UniProt:Q8W752 (605 aa) fasta scores: E()=3e-143, 66.612% id in 605 aa; terminase, ATPase subunit complement(1122899..1124671) Aliivibrio salmonicida LFI1238 6986795 YP_002262516.1 CDS VSAL_I1027 NC_011312.1 1124840 1125715 D Similar to Vibrio phage K139 orf17 UniProt:Q8W751 (299 aa) fasta scores: E()=4e-41, 49.020% id in 306 aa; phage capsid scaffolding protein 1124840..1125715 Aliivibrio salmonicida LFI1238 6986796 YP_002262517.1 CDS VSAL_I1028 NC_011312.1 1125729 1126739 D Similar to Vibrio phage K139 orf18 UniProt:Q8W750 (341 aa) fasta scores: E()=2e-52, 48.000% id in 300 aa; major capsid protein 1125729..1126739 Aliivibrio salmonicida LFI1238 6986797 YP_002262518.1 CDS VSAL_I1029 NC_011312.1 1126756 1127472 D Similar to Vibrio phage K139 orf19 UniProt:Q8W749 (238 aa) fasta scores: E()=2.7e-49, 51.464% id in 239 aa; phage terminase, endonuclease subunit 1126756..1127472 Aliivibrio salmonicida LFI1238 6986798 YP_002262519.1 CDS VSAL_I1030 NC_011312.1 1127601 1127942 D membrane protein, phage gene 1127601..1127942 Aliivibrio salmonicida LFI1238 6986799 YP_002262520.1 CDS VSAL_I1031 NC_011312.1 1127935 1128399 D Similar to Vibrio phage K139 orf20 UniProt:Q8W748 (153 aa) fasta scores: E()=2.5e-26, 51.299% id in 154 aa; head completion/stabilization protein 1127935..1128399 Aliivibrio salmonicida LFI1238 6986800 YP_002262521.1 CDS VSAL_I1032 NC_011312.1 1128396 1128920 D Similar to Vibrio phage K139 orf21 UniProt:Q8W747 (162 aa) fasta scores: E()=1.2e-15, 33.974% id in 156 aa; phage protein 1128396..1128920 Aliivibrio salmonicida LFI1238 6986801 YP_002262522.1 CDS VSAL_I1034 NC_011312.1 1129637 1130749 D Similar to Haemophilus phage HP2 orf23 UniProt:Q94MY9 (376 aa) fasta scores: E()=9.3e-68, 50.667% id in 375 aa; tail sheat protein 1129637..1130749 Aliivibrio salmonicida LFI1238 6986803 YP_002262523.1 CDS VSAL_I1035 NC_011312.1 1130749 1131204 D Similar to Vibrio phage K139 orf25 orf25. UniProt:Q8W743 (EMBL:AF125163) (152 aa) fasta scores: E()=8.2e-27, 55.782% id in 147 aa; tail tube protein 1130749..1131204 Aliivibrio salmonicida LFI1238 6986804 YP_002262524.1 CDS VSAL_I1036 NC_011312.1 1131216 1131431 D Similar to Vibrio phage K139 orf26 orf26. UniProt:Q8W742 (EMBL:AF125163) (69 aa) fasta scores: E()=5.9e-09, 50.794% id in 63 aa; rRNA transcription initiatior protein, phage gene 1131216..1131431 Aliivibrio salmonicida LFI1238 6986805 YP_002262525.1 CDS VSAL_I1037 NC_011312.1 1131428 1131850 D phage protein 1131428..1131850 Aliivibrio salmonicida LFI1238 6986806 YP_002262526.1 CDS VSAL_I1038 NC_011312.1 1131853 1132098 D phage protein 1131853..1132098 Aliivibrio salmonicida LFI1238 6986807 YP_002262527.1 CDS VSAL_I1039 NC_011312.1 1132101 1132340 D protein, phage gene 1132101..1132340 Aliivibrio salmonicida LFI1238 6986808 YP_002262528.1 CDS VSAL_I1040 NC_011312.1 1132337 1132600 D Similar to Haemophilus phage HP2 orf26. UniProt:Q775G2 (EMBL:AY027935) (102 aa) fasta scores: E()=4e-05, 32.927% id in 82 aa overlap; query 5-86; subject 21-102; phage protein; orf30 1132337..1132600 Aliivibrio salmonicida LFI1238 6986809 YP_002262529.1 CDS VSAL_I1041 NC_011312.1 1132788 1134902 D Similar to Vibrio phage K139 orf31 orf31. UniProt:Q8W737 (EMBL:AF125163) (605 aa) fasta scores: E()=3.2e-101, 55.500% id in 600 aa; tail length determinator 1132788..1134902 Aliivibrio salmonicida LFI1238 6986810 YP_002262530.1 CDS VSAL_I1042 NC_011312.1 1134899 1135225 D Similar to Vibrio phage K139 orf32 orf32. UniProt:Q8W736 (EMBL:AF125163) (110 aa) fasta scores: E()=5.3e-13, 54.167% id in 96 aa; phage protein 1134899..1135225 Aliivibrio salmonicida LFI1238 6986811 YP_002262531.1 CDS VSAL_I1043 NC_011312.1 1135222 1136406 D Similar to Vibrio phage K139 orf33 orf33. UniProt:Q8W735 (EMBL:AF125163) (399 aa) fasta scores: E()=1e-75, 51.139% id in 395 aa; phage protein 1135222..1136406 Aliivibrio salmonicida LFI1238 6986812 YP_002262532.1 CDS VSAL_I1044 NC_011312.1 1136399 1136989 D Similar to Vibrio phage K139 orf34 orf34. UniProt:Q8W734 (EMBL:AF125163) (219 aa) fasta scores: E()=1.3e-35, 50.000% id in 184 aa; phage protein 1136399..1136989 Aliivibrio salmonicida LFI1238 6986813 YP_002262533.1 CDS VSAL_I1045 NC_011312.1 1136992 1139064 D Similar to Bacteriophage HP1 tail fiber protein (orf31). UniProt:P51735 (EMBL:BH24159) (925 aa) fasta scores: E()=2.2e-35, 28.483% id in 646 aa; tail fiber protein 1136992..1139064 Aliivibrio salmonicida LFI1238 6986814 YP_002262534.1 CDS VSAL_I1046 NC_011312.1 1139064 1139507 D phage protein 1139064..1139507 Aliivibrio salmonicida LFI1238 6986815 YP_002262535.1 CDS VSAL_I1047 NC_011312.1 1139507 1140400 D Similar to Vibrio phage K139 orf37. UniProt:Q8W731 (EMBL:AF125163) (297 aa) fasta scores: E()=1e-41, 41.497% id in 294 aa; phage protein 1139507..1140400 Aliivibrio salmonicida LFI1238 6986816 YP_002262536.1 CDS VSAL_I1048 NC_011312.1 1140397 1140945 D Similar to Yersinia pseudotuberculosis hypothetical protein. UniProt:Q666T6 (EMBL:BX936398) (184 aa) fasta scores: E()=1.4e-14, 38.926% id in 149 aa; CDS is extended at the C-terminus in comparison to orthologues; phage protein 1140397..1140945 Aliivibrio salmonicida LFI1238 6986817 YP_002262537.1 CDS VSAL_I1049 NC_011312.1 1140942 1142567 D Similar to Vibrio phage K139 orf39 orf39. UniProt:Q8W729 (EMBL:AF125163) (543 aa) fasta scores: E()=2.6e-82, 47.162% id in 458 aa; phage protein 1140942..1142567 Aliivibrio salmonicida LFI1238 6986818 YP_002262538.1 CDS VSAL_I1050 NC_011312.1 1142569 1142766 D phage protein 1142569..1142766 Aliivibrio salmonicida LFI1238 6986819 YP_002262539.1 CDS VSAL_I1051 NC_011312.1 1143101 1143982 D transposase 1143101..1143982 Aliivibrio salmonicida LFI1238 6986820 YP_002262540.1 CDS VSAL_I1052 NC_011312.1 1144549 1144848 D hypothetical protein 1144549..1144848 Aliivibrio salmonicida LFI1238 6986821 YP_002262541.1 CDS VSAL_I1053 NC_011312.1 1145099 1145938 D 2OG-Fe(II) oxygenase 1145099..1145938 Aliivibrio salmonicida LFI1238 6986822 YP_002262542.1 CDS VSAL_I1054 NC_011312.1 1146101 1146595 D acetyltransferase 1146101..1146595 Aliivibrio salmonicida LFI1238 6986823 YP_002262543.1 CDS VSAL_I1055 NC_011312.1 1146709 1147524 D phosphorylase 1146709..1147524 Aliivibrio salmonicida LFI1238 6986824 YP_002262544.1 CDS cah NC_011312.1 1147951 1148658 R carbonic anhydrase complement(1147951..1148658) Aliivibrio salmonicida LFI1238 6988143 YP_002262545.1 CDS VSAL_I1057 NC_011312.1 1149433 1151238 R sulfatase complement(1149433..1151238) Aliivibrio salmonicida LFI1238 6988145 YP_002262546.1 CDS VSAL_I1058 NC_011312.1 1151258 1151485 R hypothetical protein complement(1151258..1151485) Aliivibrio salmonicida LFI1238 6986826 YP_002262547.1 CDS ndpA NC_011312.1 1151562 1152578 D nucleoid-associated protein NdpA 1151562..1152578 Aliivibrio salmonicida LFI1238 6986827 YP_002262548.1 CDS VSAL_I1060 NC_011312.1 1152720 1153910 D Expression may be stress-induced and regulated by Fur; hypothetical protein 1152720..1153910 Aliivibrio salmonicida LFI1238 6988889 YP_002262549.1 CDS VSAL_I1061 NC_011312.1 1154092 1155579 R transposase complement(1154092..1155579) Aliivibrio salmonicida LFI1238 6986828 YP_002262550.1 CDS VSAL_I1062 NC_011312.1 1155651 1155998 R transposase complement(1155651..1155998) Aliivibrio salmonicida LFI1238 6986829 YP_002262551.1 CDS rnd NC_011312.1 1156366 1157490 D ribonuclease D (rnase d) 1156366..1157490 Aliivibrio salmonicida LFI1238 6986830 YP_002262552.1 CDS minE NC_011312.1 1157566 1157826 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(1157566..1157826) Aliivibrio salmonicida LFI1238 6989129 YP_002262553.1 CDS minD NC_011312.1 1157829 1158641 R septum site-determining protein MinD (cell division inhibitor MinD) complement(1157829..1158641) Aliivibrio salmonicida LFI1238 6988807 YP_002262554.1 CDS minC NC_011312.1 1158665 1159330 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(1158665..1159330) Aliivibrio salmonicida LFI1238 6988806 YP_002262555.1 CDS VSAL_I1068 NC_011312.1 1159542 1159823 D hypothetical protein 1159542..1159823 Aliivibrio salmonicida LFI1238 6988805 YP_002262556.1 CDS VSAL_I1069 NC_011312.1 1159825 1160799 D hypothetical protein 1159825..1160799 Aliivibrio salmonicida LFI1238 6986831 YP_002262557.1 CDS mnmC NC_011312.1 1160921 1162963 R catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase complement(1160921..1162963) Aliivibrio salmonicida LFI1238 6986832 YP_002262558.1 CDS fabB NC_011312.1 1163084 1164295 D 3-ketoacyl-ACP synthase FabB 1163084..1164295 Aliivibrio salmonicida LFI1238 6986833 YP_002262559.1 CDS pdxB NC_011312.1 1164455 1165585 D Expression may be stress-induced; erythronate-4-phosphate dehydrogenase 1164455..1165585 Aliivibrio salmonicida LFI1238 6988464 YP_002262560.1 CDS asd NC_011312.1 1165585 1166598 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1165585..1166598 Aliivibrio salmonicida LFI1238 6988954 YP_002262561.1 CDS VSAL_I1074 NC_011312.1 1166802 1170623 D hypothetical protein 1166802..1170623 Aliivibrio salmonicida LFI1238 6988268 YP_002262562.1 CDS truA NC_011312.1 1170713 1171501 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1170713..1171501 Aliivibrio salmonicida LFI1238 6986834 YP_002262563.1 CDS accD NC_011312.1 1171682 1172572 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1171682..1172572 Aliivibrio salmonicida LFI1238 6989335 YP_002262564.1 CDS folC NC_011312.1 1172671 1173951 D FolC bifunctional protein (tetrahydrofolate synthase) (folylpolyglutamate synthase) 1172671..1173951 Aliivibrio salmonicida LFI1238 6988212 YP_002262565.1 CDS VSAL_I1078 NC_011312.1 1173961 1174530 D sporulation and cell division protein 1173961..1174530 Aliivibrio salmonicida LFI1238 6988554 YP_002262566.1 CDS cvpA NC_011312.1 1174592 1175083 D colicin V production protein (protein DedE) 1174592..1175083 Aliivibrio salmonicida LFI1238 6986835 YP_002262567.1 CDS purF NC_011312.1 1175118 1176632 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1175118..1176632 Aliivibrio salmonicida LFI1238 6988363 YP_002262568.1 CDS aphB NC_011312.1 1176715 1177590 R transcriptional regulator AphB complement(1176715..1177590) Aliivibrio salmonicida LFI1238 6989038 YP_002262569.1 CDS VSAL_I1082 NC_011312.1 1177829 1178932 D response regulator 1177829..1178932 Aliivibrio salmonicida LFI1238 6988242 YP_002262570.1 CDS VSAL_I1083 NC_011312.1 1178975 1179367 D Possible alternative translational start site after codon 9; hypothetical protein 1178975..1179367 Aliivibrio salmonicida LFI1238 6986836 YP_002262571.1 CDS apt NC_011312.1 1179452 1179997 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1179452..1179997 Aliivibrio salmonicida LFI1238 6986837 YP_002262572.1 CDS dnaX NC_011312.1 1180101 1182245 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1180101..1182245 Aliivibrio salmonicida LFI1238 6988243 YP_002262573.1 CDS VSAL_I1086 NC_011312.1 1182334 1182669 D hypothetical protein 1182334..1182669 Aliivibrio salmonicida LFI1238 6988421 YP_002262574.1 CDS recR NC_011312.1 1182772 1183374 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1182772..1183374 Aliivibrio salmonicida LFI1238 6986838 YP_002262575.1 CDS VSAL_I1088 NC_011312.1 1183346 1183906 R integral membrane protein complement(1183346..1183906) Aliivibrio salmonicida LFI1238 6989085 YP_002262576.1 CDS VSAL_I1090 NC_011312.1 1184217 1185083 R transposase complement(1184217..1185083) Aliivibrio salmonicida LFI1238 6986840 YP_002262577.1 CDS VSAL_I1091 NC_011312.1 1185629 1186975 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(1185629..1186975) Aliivibrio salmonicida LFI1238 6986841 YP_002262578.1 CDS calB NC_011312.1 1187116 1188543 D Expression may be regulated by Fur; coniferyl aldehyde dehydrogenase 1187116..1188543 Aliivibrio salmonicida LFI1238 6986842 YP_002262579.1 CDS VSAL_I1093 NC_011312.1 1188622 1189506 D integral membrane protein 1188622..1189506 Aliivibrio salmonicida LFI1238 6988300 YP_002262580.1 CDS VSAL_I1094 NC_011312.1 1189612 1190760 R iron-containing alcohol dehydrogenase complement(1189612..1190760) Aliivibrio salmonicida LFI1238 6986843 YP_002262581.1 CDS VSAL_I1095 NC_011312.1 1190957 1191841 D AraC family transcriptional regulator 1190957..1191841 Aliivibrio salmonicida LFI1238 6986844 YP_002262582.1 CDS VSAL_I1096 NC_011312.1 1191884 1192417 D hypothetical protein 1191884..1192417 Aliivibrio salmonicida LFI1238 6986845 YP_002262583.1 CDS VSAL_I1097 NC_011312.1 1192485 1193699 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(1192485..1193699) Aliivibrio salmonicida LFI1238 6986846 YP_002262584.1 CDS menF NC_011312.1 1194026 1195348 D Expression may be stress-induced; menaquinone-specific isochorismate synthase 1194026..1195348 Aliivibrio salmonicida LFI1238 6986847 YP_002262585.1 CDS menD NC_011312.1 1195345 1197078 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 1195345..1197078 Aliivibrio salmonicida LFI1238 6988786 YP_002262586.1 CDS VSAL_I1100 NC_011312.1 1197062 1197856 D catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB 1197062..1197856 Aliivibrio salmonicida LFI1238 6988784 YP_002262587.1 CDS menB NC_011312.1 1197861 1198727 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1197861..1198727 Aliivibrio salmonicida LFI1238 6986848 YP_002262588.1 CDS menC NC_011312.1 1198806 1199780 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 1198806..1199780 Aliivibrio salmonicida LFI1238 6988782 YP_002262589.1 CDS menE NC_011312.1 1199768 1201165 D O-succinylbenzoic acid--CoA ligase 1199768..1201165 Aliivibrio salmonicida LFI1238 6988783 YP_002262590.1 CDS VSAL_I1105 NC_011312.1 1201850 1202164 D transposase 1201850..1202164 Aliivibrio salmonicida LFI1238 6986849 YP_002262591.1 CDS VSAL_I1109 NC_011312.1 1206727 1207227 R hypothetical protein complement(1206727..1207227) Aliivibrio salmonicida LFI1238 6986853 YP_002262592.1 CDS VSAL_I1110 NC_011312.1 1207732 1208481 D Expression may be regulated by Fur; hypothetical protein 1207732..1208481 Aliivibrio salmonicida LFI1238 6988146 YP_002262593.1 CDS vasL NC_011312.1 1209043 1209696 R Similar to Pseudomonas aeruginosa Serine/threonine phosphoprotein phosphatase Stp1 UniProt:Q9I355 (242 aa) fasta scores: E()=6.2e-18, 36.283% id in 226 aa. The CDS appears to have a 16 amino acid residue deletion after codon 133 compared with Pseudomonas aeruginosa Stp1; serine/threonine phosphoprotein phosphatase complement(1209043..1209696) Aliivibrio salmonicida LFI1238 6986856 YP_002262594.1 CDS vasF NC_011312.1 1213243 1214070 R type VI secretion protein VasF complement(1213243..1214070) Aliivibrio salmonicida LFI1238 6989389 YP_002262595.1 CDS vasE NC_011312.1 1214072 1215394 R type VI secretion protein VasE complement(1214072..1215394) Aliivibrio salmonicida LFI1238 6989381 YP_002262596.1 CDS vasD NC_011312.1 1215406 1215894 R type VI secretion protein VasD complement(1215406..1215894) Aliivibrio salmonicida LFI1238 6989379 YP_002262597.1 CDS vasC NC_011312.1 1215928 1217289 R type VI secretion protein VasC complement(1215928..1217289) Aliivibrio salmonicida LFI1238 6989377 YP_002262598.1 CDS vasG NC_011312.1 1218905 1221523 R chaperone ClpB complement(1218905..1221523) Aliivibrio salmonicida LFI1238 6989386 YP_002262599.1 CDS vasG NC_011312.1 1221520 1222449 R Possible alternative translational start site 99 nucleotides upstream present start; type VI secretion protein VasG complement(1221520..1222449) Aliivibrio salmonicida LFI1238 6989383 YP_002262600.1 CDS vasA NC_011312.1 1222512 1224263 R type VI secretion protein VasA complement(1222512..1224263) Aliivibrio salmonicida LFI1238 6989384 YP_002262601.1 CDS vasS NC_011312.1 1224260 1224685 R type VI secretion protein VasS complement(1224260..1224685) Aliivibrio salmonicida LFI1238 6989372 YP_002262602.1 CDS vasR NC_011312.1 1224773 1226248 R type VI secretion protein VasR complement(1224773..1226248) Aliivibrio salmonicida LFI1238 6989397 YP_002262603.1 CDS vasQ NC_011312.1 1226252 1226746 R type VI secretion protein VasQ complement(1226252..1226746) Aliivibrio salmonicida LFI1238 6989394 YP_002262604.1 CDS vasJ NC_011312.1 1226761 1228302 R Weakly similar to Vibrio cholerae vasJ. Expression may be regulated by Fur; type VI secretion protein VasJ complement(1226761..1228302) Aliivibrio salmonicida LFI1238 6989392 YP_002262605.1 CDS VSAL_I1126 NC_011312.1 1228554 1228763 R hypothetical protein complement(1228554..1228763) Aliivibrio salmonicida LFI1238 6989387 YP_002262606.1 CDS VSAL_I1127 NC_011312.1 1228750 1229310 R primosomal replication protein N'' complement(1228750..1229310) Aliivibrio salmonicida LFI1238 6986857 YP_002262607.1 CDS VSAL_I1128 NC_011312.1 1229341 1230111 R membrane protein complement(1229341..1230111) Aliivibrio salmonicida LFI1238 6986858 YP_002262608.1 CDS dinG NC_011312.1 1230178 1232262 R helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG complement(1230178..1232262) Aliivibrio salmonicida LFI1238 6986859 YP_002262609.1 CDS VSAL_I1131 NC_011312.1 1233860 1234483 D hypothetical protein 1233860..1234483 Aliivibrio salmonicida LFI1238 6986861 YP_002262610.1 CDS VSAL_I1132 NC_011312.1 1234971 1235969 D outer membrane protein 1234971..1235969 Aliivibrio salmonicida LFI1238 6986862 YP_002262611.1 CDS hisG NC_011312.1 1236478 1237374 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1236478..1237374 Aliivibrio salmonicida LFI1238 6986863 YP_002262612.1 CDS hisD NC_011312.1 1237380 1238675 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1237380..1238675 Aliivibrio salmonicida LFI1238 6988665 YP_002262613.1 CDS hisC NC_011312.1 1238690 1239730 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1238690..1239730 Aliivibrio salmonicida LFI1238 6988663 YP_002262614.1 CDS hisB NC_011312.1 1239808 1240881 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1239808..1240881 Aliivibrio salmonicida LFI1238 6988662 YP_002262615.1 CDS hisH NC_011312.1 1240890 1241504 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1240890..1241504 Aliivibrio salmonicida LFI1238 6988661 YP_002262616.1 CDS hisA NC_011312.1 1241619 1242356 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1241619..1242356 Aliivibrio salmonicida LFI1238 6988666 YP_002262617.1 CDS hisF NC_011312.1 1242338 1243111 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1242338..1243111 Aliivibrio salmonicida LFI1238 6988660 YP_002262618.1 CDS hisI NC_011312.1 1243108 1243728 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 1243108..1243728 Aliivibrio salmonicida LFI1238 6988664 YP_002262619.1 CDS VSAL_I1141 NC_011312.1 1243866 1244357 D V10 pilin 1243866..1244357 Aliivibrio salmonicida LFI1238 6988667 YP_002262620.1 CDS VSAL_I1142 NC_011312.1 1244482 1245168 D RNA psedouridine synthase 1244482..1245168 Aliivibrio salmonicida LFI1238 6986864 YP_002262621.1 CDS VSAL_I1143 NC_011312.1 1245165 1246130 D hypothetical protein 1245165..1246130 Aliivibrio salmonicida LFI1238 6986865 YP_002262622.1 CDS VSAL_I1144 NC_011312.1 1246208 1246606 R lipoprotein complement(1246208..1246606) Aliivibrio salmonicida LFI1238 6986866 YP_002262623.1 CDS VSAL_I1145 NC_011312.1 1246625 1246927 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(1246625..1246927) Aliivibrio salmonicida LFI1238 6986867 YP_002262624.1 CDS yciA NC_011312.1 1247050 1247472 R acyl-CoA thioester hydrolase (p14 protein) complement(1247050..1247472) Aliivibrio salmonicida LFI1238 6986868 YP_002262625.1 CDS ispZ NC_011312.1 1247571 1248116 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(1247571..1248116) Aliivibrio salmonicida LFI1238 6989425 YP_002262626.1 CDS trpA NC_011312.1 1249890 1250696 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1249890..1250696) Aliivibrio salmonicida LFI1238 6986869 YP_002262627.1 CDS trpB NC_011312.1 1250696 1251886 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1250696..1251886) Aliivibrio salmonicida LFI1238 6989326 YP_002262628.1 CDS trpC NC_011312.1 1251897 1253309 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(1251897..1253309) Aliivibrio salmonicida LFI1238 6989327 YP_002262629.1 CDS trpD NC_011312.1 1253315 1254322 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1253315..1254322) Aliivibrio salmonicida LFI1238 6989328 YP_002262630.1 CDS trpG NC_011312.1 1254333 1254941 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(1254333..1254941) Aliivibrio salmonicida LFI1238 6989329 YP_002262631.1 CDS trpE NC_011312.1 1254941 1256578 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(1254941..1256578) Aliivibrio salmonicida LFI1238 6989331 YP_002262632.1 CDS VSAL_I1155 NC_011312.1 1256941 1257786 D hypothetical protein 1256941..1257786 Aliivibrio salmonicida LFI1238 6989330 YP_002262633.1 CDS VSAL_I1156 NC_011312.1 1257859 1258479 D hypothetical protein 1257859..1258479 Aliivibrio salmonicida LFI1238 6986870 YP_002262634.1 CDS ainR NC_011312.1 1258540 1261008 R autoinducer regulatory protein AinR complement(1258540..1261008) Aliivibrio salmonicida LFI1238 6986871 YP_002262635.1 CDS ainS NC_011312.1 1261020 1262210 R autoinducer synthase complement(1261020..1262210) Aliivibrio salmonicida LFI1238 6988227 YP_002262636.1 CDS rluB NC_011312.1 1262544 1263608 D ribosomal large subunit pseudouridine synthase B (rRNA pseudouridylate synthase B) 1262544..1263608 Aliivibrio salmonicida LFI1238 6988228 YP_002262637.1 CDS VSAL_I1160 NC_011312.1 1263713 1264453 R Expression may be regulated by Fur; short chain dehydrogenase complement(1263713..1264453) Aliivibrio salmonicida LFI1238 6989109 YP_002262638.1 CDS sohB NC_011312.1 1264620 1265681 D SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 1264620..1265681 Aliivibrio salmonicida LFI1238 6986872 YP_002262639.1 CDS VSAL_I1162 NC_011312.1 1265754 1265999 R hypothetical protein complement(1265754..1265999) Aliivibrio salmonicida LFI1238 6989253 YP_002262640.1 CDS VSAL_I1163 NC_011312.1 1266064 1266192 D hypothetical protein 1266064..1266192 Aliivibrio salmonicida LFI1238 6986873 YP_002262641.1 CDS topA NC_011312.1 1266401 1269040 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1266401..1269040 Aliivibrio salmonicida LFI1238 6986874 YP_002262642.1 CDS VSAL_I1166 NC_011312.1 1270324 1271517 R transposase complement(1270324..1271517) Aliivibrio salmonicida LFI1238 6986875 YP_002262643.1 CDS vasV-1 NC_011312.1 1272188 1272484 D type VI secretion protein VasV-1, PAAR domain protein 1272188..1272484 Aliivibrio salmonicida LFI1238 6989399 YP_002262644.1 CDS vasJ-1 NC_011312.1 1272880 1274265 D Weakly similar to Rhizobium leguminosarum bv. trifolii ImpA UniProt:Q93ED3 (358 aa) fasta scores: E()=0.0033, 23.618% id in 398 aa. Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins. Expression may be regulated by Fur; type VI secretion protein VasJ-1 1272880..1274265 Aliivibrio salmonicida LFI1238 6989400 YP_002262645.1 CDS hcp-3 NC_011312.1 1274426 1274818 D hemolysin-coregulated protein Hcp-3 1274426..1274818 Aliivibrio salmonicida LFI1238 6989388 YP_002262646.1 CDS vasQ-1 NC_011312.1 1274890 1275399 D Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins; type VI secretion protein VasQ-1 1274890..1275399 Aliivibrio salmonicida LFI1238 6988639 YP_002262647.1 CDS vasRA-1 NC_011312.1 1275399 1276880 D Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins; type VI secretion protein VasRA-1 1275399..1276880 Aliivibrio salmonicida LFI1238 6989393 YP_002262648.1 CDS vasRB-1 NC_011312.1 1276930 1278291 D Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins; type VI secretion protein VasRB-1 1276930..1278291 Aliivibrio salmonicida LFI1238 6989395 YP_002262649.1 CDS vasS-1 NC_011312.1 1278288 1278710 D type VI secretion protein VasS-1 1278288..1278710 Aliivibrio salmonicida LFI1238 6989396 YP_002262650.1 CDS vasA-1 NC_011312.1 1278703 1280484 D Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins; type VI secretion protein VasA-1 1278703..1280484 Aliivibrio salmonicida LFI1238 6989398 YP_002262651.1 CDS vasB-1 NC_011312.1 1280466 1281449 D type VI secretion protein VasB-1 1280466..1281449 Aliivibrio salmonicida LFI1238 6989373 YP_002262652.1 CDS vasG-1 NC_011312.1 1281456 1284074 D chaperone ClpB-1 1281456..1284074 Aliivibrio salmonicida LFI1238 6989374 YP_002262653.1 CDS vasV-1 NC_011312.1 1284155 1284313 D type VI secretion protein VasV-1 1284155..1284313 Aliivibrio salmonicida LFI1238 6989385 YP_002262654.1 CDS vasC-1 NC_011312.1 1284376 1285320 D Contains phospho-specific protein-protein interaction motif FHA; type VI secretion protein VasC-1 1284376..1285320 Aliivibrio salmonicida LFI1238 6989401 YP_002262655.1 CDS vasD-1 NC_011312.1 1285317 1285781 D type VI secretion protein VasD-1 1285317..1285781 Aliivibrio salmonicida LFI1238 6989376 YP_002262656.1 CDS vasE-1 NC_011312.1 1285784 1287100 D Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins; type VI secretion protein VasE-1 1285784..1287100 Aliivibrio salmonicida LFI1238 6989378 YP_002262657.1 CDS vasF-1 NC_011312.1 1287108 1288232 D type VI secretion protein VasF-1 1287108..1288232 Aliivibrio salmonicida LFI1238 6989380 YP_002262658.1 CDS VSAL_I1184 NC_011312.1 1290747 1292054 D transposase 1290747..1292054 Aliivibrio salmonicida LFI1238 6989390 YP_002262659.1 CDS vasX-1 NC_011312.1 1293110 1293727 D Serine/Threonine protein kinase domain; type VI secretion protein VasX-1 1293110..1293727 Aliivibrio salmonicida LFI1238 6986877 YP_002262660.1 CDS VSAL_I1186 NC_011312.1 1293881 1294516 R lysine exporter protein complement(1293881..1294516) Aliivibrio salmonicida LFI1238 6989402 YP_002262661.1 CDS VSAL_I1187 NC_011312.1 1294730 1295566 D Expression may be regulated by Fur; AraC family transcriptional regulator 1294730..1295566 Aliivibrio salmonicida LFI1238 6986878 YP_002262662.1 CDS VSAL_I1188 NC_011312.1 1295639 1296352 D branched-chain amino acid transport protein 1295639..1296352 Aliivibrio salmonicida LFI1238 6986879 YP_002262663.1 CDS VSAL_I1189 NC_011312.1 1296349 1296669 D branched-chain amino acid transport protein 1296349..1296669 Aliivibrio salmonicida LFI1238 6986880 YP_002262664.1 CDS VSAL_I1190 NC_011312.1 1296672 1297286 R fumarylacetoacetate hydrolase complement(1296672..1297286) Aliivibrio salmonicida LFI1238 6986881 YP_002262665.1 CDS VSAL_I1191 NC_011312.1 1297498 1298334 D AraC family transcriptional regulator 1297498..1298334 Aliivibrio salmonicida LFI1238 6986882 YP_002262666.1 CDS VSAL_I1192 NC_011312.1 1298406 1299218 R acetyltransferase complement(1298406..1299218) Aliivibrio salmonicida LFI1238 6986883 YP_002262667.1 CDS VSAL_I1193 NC_011312.1 1299497 1300726 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1299497..1300726 Aliivibrio salmonicida LFI1238 6986884 YP_002262668.1 CDS dcuC NC_011312.1 1300729 1302093 D anaerobic C4-dicarboxylate transporter DcuC 1300729..1302093 Aliivibrio salmonicida LFI1238 6986885 YP_002262669.1 CDS VSAL_I1195 NC_011312.1 1302210 1303466 R adenylosuccinate synthetase complement(1302210..1303466) Aliivibrio salmonicida LFI1238 6988399 YP_002262670.1 CDS VSAL_I1196 NC_011312.1 1303596 1304492 D Similar to Escherichia coli HTH-type transcriptional regulator CynR (cyn operon transcriptiona activator) UniProt:P27111 (299 aa) blastp scores: E()=1e-10; LysR family transcriptional regulator 1303596..1304492 Aliivibrio salmonicida LFI1238 6986886 YP_002262671.1 CDS gadB NC_011312.1 1304769 1306163 D glutamate decarboxylase 1304769..1306163 Aliivibrio salmonicida LFI1238 6986887 YP_002262672.1 CDS VSAL_I1198 NC_011312.1 1306260 1308137 D membrane permease 1306260..1308137 Aliivibrio salmonicida LFI1238 6988580 YP_002262673.1 CDS VSAL_I1199 NC_011312.1 1308200 1309102 R LysR family transcriptional regulator complement(1308200..1309102) Aliivibrio salmonicida LFI1238 6986888 YP_002262674.1 CDS VSAL_I1200 NC_011312.1 1309250 1310101 D pirin 1309250..1310101 Aliivibrio salmonicida LFI1238 6986889 YP_002262675.1 CDS VSAL_I1201 NC_011312.1 1310164 1311135 D IMP dehydrogenase/GMP reductase 1310164..1311135 Aliivibrio salmonicida LFI1238 6986890 YP_002262676.1 CDS hcp NC_011312.1 1311319 1311840 D Expression may be stress-induced; secreted protein Hcp-1 1311319..1311840 Aliivibrio salmonicida LFI1238 6986891 YP_002262677.1 CDS VSAL_I1203 NC_011312.1 1311948 1312160 R hypothetical protein complement(1311948..1312160) Aliivibrio salmonicida LFI1238 6988638 YP_002262678.1 CDS VSAL_I1204 NC_011312.1 1312374 1314290 D C-terminal part is similar to Vibrio cholerae Lysophospholipase L2 LypA UniProt:Q56636 (338 aa) fasta scores: E()=1.5e-40, 38.554% id in 332 aa, and N-terminal part is similar to Escherichia coli Hypothetical protein UniProt:Q2M5U0 (357 aa) fasta scores: E()=4.4e-40, 38.170% id in 317 aa. From sequence comparisons the CDS appears as a fusion of two genes. The sequence has been checked and is believed to be correct; phospholipase 1312374..1314290 Aliivibrio salmonicida LFI1238 6986892 YP_002262679.1 CDS VSAL_I1205 NC_011312.1 1314395 1315882 R transposase complement(1314395..1315882) Aliivibrio salmonicida LFI1238 6986893 YP_002262680.1 CDS VSAL_I1206 NC_011312.1 1315953 1316300 R transposase complement(1315953..1316300) Aliivibrio salmonicida LFI1238 6986894 YP_002262681.1 CDS VSAL_I1207 NC_011312.1 1316297 1316611 R transposase complement(1316297..1316611) Aliivibrio salmonicida LFI1238 6986895 YP_002262682.1 CDS VSAL_I1209 NC_011312.1 1317707 1318588 R transposase complement(1317707..1318588) Aliivibrio salmonicida LFI1238 6986897 YP_002262683.1 CDS VSAL_I1210 NC_011312.1 1318900 1319895 D Expression may be stress-induced; NADP or NAD utilizing oxidoreductase 1318900..1319895 Aliivibrio salmonicida LFI1238 6986898 YP_002262684.1 CDS VSAL_I1211 NC_011312.1 1319907 1321394 D extracellular solute-binding protein 1319907..1321394 Aliivibrio salmonicida LFI1238 6986899 YP_002262685.1 CDS VSAL_I1212 NC_011312.1 1321384 1322226 R AraC family transcriptional regulator complement(1321384..1322226) Aliivibrio salmonicida LFI1238 6986900 YP_002262686.1 CDS VSAL_I1213 NC_011312.1 1322229 1322831 R transporter LysE family complement(1322229..1322831) Aliivibrio salmonicida LFI1238 6986901 YP_002262687.1 CDS VSAL_I1214 NC_011312.1 1323029 1323775 D Similar to Pseudomonas aeruginosa mobile metallo-beta-lactamase blaGIM-1 UniProt:Q704V1 (250 aa) fasta scores: E()=1.1e-33, 40.833% id in 240 aa; mobile metallo-beta-lactamase 1323029..1323775 Aliivibrio salmonicida LFI1238 6986902 YP_002262688.1 CDS VSAL_I1215 NC_011312.1 1323927 1324475 D membrane protein 1323927..1324475 Aliivibrio salmonicida LFI1238 6986903 YP_002262689.1 CDS VSAL_I1216 NC_011312.1 1324485 1324712 D HTH-type transcriptional regulator 1324485..1324712 Aliivibrio salmonicida LFI1238 6986904 YP_002262690.1 CDS VSAL_I1217 NC_011312.1 1324786 1325310 R hypothetical protein complement(1324786..1325310) Aliivibrio salmonicida LFI1238 6986905 YP_002262691.1 CDS VSAL_I1218 NC_011312.1 1325459 1326340 D transposase 1325459..1326340 Aliivibrio salmonicida LFI1238 6986906 YP_002262692.1 CDS braB NC_011312.1 1326995 1328293 D branched chain amino acid transport system II carrier protein 1326995..1328293 Aliivibrio salmonicida LFI1238 6986908 YP_002262693.1 CDS VSAL_I1221 NC_011312.1 1328569 1329081 D CDS is extended at the N-terminus in comparison to orthologues; membrane protein 1328569..1329081 Aliivibrio salmonicida LFI1238 6988294 YP_002262694.1 CDS VSAL_I1222 NC_011312.1 1329187 1331943 R outer membrane protein complement(1329187..1331943) Aliivibrio salmonicida LFI1238 6986909 YP_002262695.1 CDS VSAL_I1223 NC_011312.1 1332155 1332745 R outer membrane protein A complement(1332155..1332745) Aliivibrio salmonicida LFI1238 6986910 YP_002262696.1 CDS VSAL_I1224 NC_011312.1 1333119 1334027 D hypothetical protein 1333119..1334027 Aliivibrio salmonicida LFI1238 6986911 YP_002262697.1 CDS VSAL_I1225 NC_011312.1 1334018 1334500 D hypothetical protein 1334018..1334500 Aliivibrio salmonicida LFI1238 6986912 YP_002262698.1 CDS VSAL_I1226 NC_011312.1 1334541 1334876 R Expression may be regulated by Fur; hypothetical protein complement(1334541..1334876) Aliivibrio salmonicida LFI1238 6986913 YP_002262699.1 CDS dcuB NC_011312.1 1335288 1336601 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 1335288..1336601 Aliivibrio salmonicida LFI1238 6986914 YP_002262700.1 CDS VSAL_I1228 NC_011312.1 1336870 1338675 D hypothetical protein 1336870..1338675 Aliivibrio salmonicida LFI1238 6988396 YP_002262701.1 CDS VSAL_I1229 NC_011312.1 1338909 1339841 D immunogenic protein precursor 1338909..1339841 Aliivibrio salmonicida LFI1238 6986915 YP_002262702.1 CDS VSAL_I1230 NC_011312.1 1339925 1341223 D DctM-like transport protein 1339925..1341223 Aliivibrio salmonicida LFI1238 6986916 YP_002262703.1 CDS VSAL_I1231 NC_011312.1 1341374 1342474 D extracellular solute-binding protein 1341374..1342474 Aliivibrio salmonicida LFI1238 6986917 YP_002262704.1 CDS VSAL_I1232 NC_011312.1 1342496 1343359 R LysR family transcriptional regulator complement(1342496..1343359) Aliivibrio salmonicida LFI1238 6986918 YP_002262705.1 CDS VSAL_I1233 NC_011312.1 1343523 1344458 D LysR family transcriptional regulator 1343523..1344458 Aliivibrio salmonicida LFI1238 6986919 YP_002262706.1 CDS VSAL_I1234 NC_011312.1 1344745 1345950 D sodium-dependent nucleoside transport protein 1344745..1345950 Aliivibrio salmonicida LFI1238 6986920 YP_002262707.1 CDS VSAL_I1235 NC_011312.1 1346513 1346605 D hypothetical protein 1346513..1346605 Aliivibrio salmonicida LFI1238 6986921 YP_002262708.1 CDS VSAL_I1236 NC_011312.1 1346621 1346725 D hypothetical protein 1346621..1346725 Aliivibrio salmonicida LFI1238 6986922 YP_002262709.1 CDS VSAL_I1237 NC_011312.1 1346786 1347229 D membrane protein 1346786..1347229 Aliivibrio salmonicida LFI1238 6986923 YP_002262710.1 CDS VSAL_I1239 NC_011312.1 1349281 1349595 D transposase 1349281..1349595 Aliivibrio salmonicida LFI1238 6986924 YP_002262711.1 CDS VSAL_I1240 NC_011312.1 1349592 1349939 D transposase 1349592..1349939 Aliivibrio salmonicida LFI1238 6986925 YP_002262712.1 CDS VSAL_I1242 NC_011312.1 1351891 1352463 R TetR family transcriptional regulator complement(1351891..1352463) Aliivibrio salmonicida LFI1238 6986927 YP_002262713.1 CDS VSAL_I1243 NC_011312.1 1352593 1353501 R amidase complement(1352593..1353501) Aliivibrio salmonicida LFI1238 6986928 YP_002262714.1 CDS ppiB NC_011312.1 1353653 1354150 R peptidyl-prolyl cis-trans isomerase B complement(1353653..1354150) Aliivibrio salmonicida LFI1238 6986929 YP_002262715.1 CDS ampC NC_011312.1 1354293 1355156 R beta-lactamase complement(1354293..1355156) Aliivibrio salmonicida LFI1238 6989000 YP_002262716.1 CDS VSAL_I1246 NC_011312.1 1355161 1356081 R hypothetical protein complement(1355161..1356081) Aliivibrio salmonicida LFI1238 6988233 YP_002262717.1 CDS VSAL_I1247 NC_011312.1 1356171 1356515 R hypothetical protein complement(1356171..1356515) Aliivibrio salmonicida LFI1238 6986930 YP_002262718.1 CDS VSAL_I1248 NC_011312.1 1356686 1357129 R Expression may be regulated by Fur; membrane protein complement(1356686..1357129) Aliivibrio salmonicida LFI1238 6986931 YP_002262719.1 CDS VSAL_I1249 NC_011312.1 1357404 1357871 D Expression may be regulated by Fur; membrane protein 1357404..1357871 Aliivibrio salmonicida LFI1238 6986932 YP_002262720.1 CDS VSAL_I1250 NC_011312.1 1358066 1358929 D LysR family transcriptional regulator 1358066..1358929 Aliivibrio salmonicida LFI1238 6986933 YP_002262721.1 CDS VSAL_I1251 NC_011312.1 1359029 1359820 D Possible alternative translational start site after codon 5; hypothetical protein 1359029..1359820 Aliivibrio salmonicida LFI1238 6986934 YP_002262722.1 CDS VSAL_I1252 NC_011312.1 1359896 1360810 R Similar to Escherichia coli Glycine cleavage system transcriptional activator GcvA UniProt:P0A9F6 (305 aa) fasta scores: E()=2.4e-19, 32.013% id in 303 aa; LysR family transcriptional regulator complement(1359896..1360810) Aliivibrio salmonicida LFI1238 6986935 YP_002262723.1 CDS VSAL_I1253 NC_011312.1 1360921 1362912 D X-Pro dipeptidyl-peptidase 1360921..1362912 Aliivibrio salmonicida LFI1238 6986936 YP_002262724.1 CDS VSAL_I1254 NC_011312.1 1362933 1364456 D Similar to Marinococcus halophilus Ectoine transporter EctM UniProt:Q6VTH4 (525 aa) fasta scores: E()=5e-45, 27.733% id in 494 aa; transporter BCCT family 1362933..1364456 Aliivibrio salmonicida LFI1238 6986937 YP_002262725.1 CDS dnaJ NC_011312.1 1364764 1365657 D chaperone protein DnaJ 1364764..1365657 Aliivibrio salmonicida LFI1238 6986938 YP_002262726.1 CDS VSAL_I1256 NC_011312.1 1365834 1366148 D transposase 1365834..1366148 Aliivibrio salmonicida LFI1238 6988415 YP_002262727.1 CDS VSAL_I1257 NC_011312.1 1366145 1366492 D transposase 1366145..1366492 Aliivibrio salmonicida LFI1238 6986939 YP_002262728.1 CDS VSAL_I1259 NC_011312.1 1368340 1369143 R RpiR family transcriptional regulator complement(1368340..1369143) Aliivibrio salmonicida LFI1238 6986941 YP_002262729.1 CDS murQ NC_011312.1 1369405 1370307 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 1369405..1370307 Aliivibrio salmonicida LFI1238 6986942 YP_002262730.1 CDS VSAL_I1262 NC_011312.1 1371318 1371857 D hypothetical protein 1371318..1371857 Aliivibrio salmonicida LFI1238 6986944 YP_002262731.1 CDS VSAL_I1263 NC_011312.1 1371953 1372681 D membrane protein 1371953..1372681 Aliivibrio salmonicida LFI1238 6986945 YP_002262732.1 CDS VSAL_I1264 NC_011312.1 1372689 1373696 R LysR family transcriptional regulator complement(1372689..1373696) Aliivibrio salmonicida LFI1238 6986946 YP_002262733.1 CDS VSAL_I1266 NC_011312.1 1373986 1374300 D transposase 1373986..1374300 Aliivibrio salmonicida LFI1238 6986948 YP_002262734.1 CDS VSAL_I1269 NC_011312.1 1376340 1377029 R hypothetical protein complement(1376340..1377029) Aliivibrio salmonicida LFI1238 6986951 YP_002262735.1 CDS VSAL_I1270 NC_011312.1 1377116 1379269 R Similar to Thermotoga maritima ribonucleotide reductase (B12-dependent) PDB 1XJE, Evalue 9e-56; ribonucleotide reductase complement(1377116..1379269) Aliivibrio salmonicida LFI1238 6986952 YP_002262736.1 CDS VSAL_I1271 NC_011312.1 1379624 1380955 D Similar to caulobacter crescentus (caulobacter vibrioides) Response regulator PleD UniProt:Q9A5I5 (454 aa) fasta scores: E()=4.5e-16, 31.447% id in 318 aa; response regulator 1379624..1380955 Aliivibrio salmonicida LFI1238 6986953 YP_002262737.1 CDS sanA NC_011312.1 1381019 1381696 R vancomycin resistance protein SanA complement(1381019..1381696) Aliivibrio salmonicida LFI1238 6986954 YP_002262738.1 CDS VSAL_I1273 NC_011312.1 1381724 1382056 R membrane protein complement(1381724..1382056) Aliivibrio salmonicida LFI1238 6989220 YP_002262739.1 CDS sfcA NC_011312.1 1382175 1383863 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(1382175..1383863) Aliivibrio salmonicida LFI1238 6986955 YP_002262740.1 CDS VSAL_I1276 NC_011312.1 1385664 1386545 D transposase 1385664..1386545 Aliivibrio salmonicida LFI1238 6986956 YP_002262741.1 CDS VSAL_I1278 NC_011312.1 1387430 1387744 D transposase 1387430..1387744 Aliivibrio salmonicida LFI1238 6986958 YP_002262742.1 CDS VSAL_I1279 NC_011312.1 1387741 1388088 D transposase 1387741..1388088 Aliivibrio salmonicida LFI1238 6986959 YP_002262743.1 CDS VSAL_I1280 NC_011312.1 1388160 1389647 D transposase 1388160..1389647 Aliivibrio salmonicida LFI1238 6986960 YP_002262744.1 CDS VSAL_I1281 NC_011312.1 1390096 1391400 R sodium/dicarboxylate symporter complement(1390096..1391400) Aliivibrio salmonicida LFI1238 6986961 YP_002262745.1 CDS VSAL_I1282 NC_011312.1 1392050 1393654 D Similar to bacillus subtilis Glycine betaine transporter OpuD UniProt:P54417 (512 aa) fasta scores: E()=4.2e-61, 38.763% id in 485 aa; transporter BCCT family 1392050..1393654 Aliivibrio salmonicida LFI1238 6986962 YP_002262746.1 CDS VSAL_I1283 NC_011312.1 1393885 1394196 D hypothetical protein 1393885..1394196 Aliivibrio salmonicida LFI1238 6986963 YP_002262747.1 CDS VSAL_I1284 NC_011312.1 1394217 1394594 D hypothetical protein 1394217..1394594 Aliivibrio salmonicida LFI1238 6986964 YP_002262748.1 CDS VSAL_I1285 NC_011312.1 1395025 1396188 D hypothetical protein 1395025..1396188 Aliivibrio salmonicida LFI1238 6986965 YP_002262749.1 CDS VSAL_I1286 NC_011312.1 1396332 1397294 R hypothetical protein complement(1396332..1397294) Aliivibrio salmonicida LFI1238 6986966 YP_002262750.1 CDS VSAL_I1287 NC_011312.1 1397327 1397785 R RNA methyltransferase complement(1397327..1397785) Aliivibrio salmonicida LFI1238 6986967 YP_002262751.1 CDS VSAL_I1288 NC_011312.1 1397881 1398354 D hypothetical protein 1397881..1398354 Aliivibrio salmonicida LFI1238 6986968 YP_002262752.1 CDS VSAL_I1289 NC_011312.1 1398517 1399893 D alkaline-resistant alpha-amylase precursor 1398517..1399893 Aliivibrio salmonicida LFI1238 6986969 YP_002262753.1 CDS VSAL_I1291 NC_011312.1 1400496 1400810 D transposase 1400496..1400810 Aliivibrio salmonicida LFI1238 6986970 YP_002262754.1 CDS VSAL_I1292 NC_011312.1 1400807 1401154 D transposase 1400807..1401154 Aliivibrio salmonicida LFI1238 6986971 YP_002262755.1 CDS VSAL_I1293 NC_011312.1 1401226 1402713 D transposase 1401226..1402713 Aliivibrio salmonicida LFI1238 6986972 YP_002262756.1 CDS VSAL_I1294 NC_011312.1 1403518 1405509 R methyl-accepting chemotaxis protein complement(1403518..1405509) Aliivibrio salmonicida LFI1238 6986973 YP_002262757.1 CDS VSAL_I1295 NC_011312.1 1405807 1406157 D HIT family protein 1405807..1406157 Aliivibrio salmonicida LFI1238 6986974 YP_002262758.1 CDS VSAL_I1296 NC_011312.1 1406225 1407622 D lipoprotein 1406225..1407622 Aliivibrio salmonicida LFI1238 6986975 YP_002262759.1 CDS VSAL_I1297 NC_011312.1 1407622 1408011 D lipoprotein 1407622..1408011 Aliivibrio salmonicida LFI1238 6986976 YP_002262760.1 CDS VSAL_I1298 NC_011312.1 1408058 1408648 D lipoprotein 1408058..1408648 Aliivibrio salmonicida LFI1238 6986977 YP_002262761.1 CDS VSAL_I1299 NC_011312.1 1408863 1412438 D hypothetical protein 1408863..1412438 Aliivibrio salmonicida LFI1238 6986978 YP_002262762.1 CDS VSAL_I1300 NC_011312.1 1412441 1413328 D hypothetical protein 1412441..1413328 Aliivibrio salmonicida LFI1238 6986979 YP_002262763.1 CDS VSAL_I1301 NC_011312.1 1413481 1413819 D hypothetical protein 1413481..1413819 Aliivibrio salmonicida LFI1238 6986980 YP_002262764.1 CDS VSAL_I1302 NC_011312.1 1413903 1414646 R hypothetical protein complement(1413903..1414646) Aliivibrio salmonicida LFI1238 6986981 YP_002262765.1 CDS VSAL_I1303 NC_011312.1 1414909 1415691 R membrane protein complement(1414909..1415691) Aliivibrio salmonicida LFI1238 6986982 YP_002262766.1 CDS VSAL_I1304 NC_011312.1 1415702 1416598 R 6-phosphogluconate dehydrogenase complement(1415702..1416598) Aliivibrio salmonicida LFI1238 6986983 YP_002262767.1 CDS VSAL_I1305 NC_011312.1 1416608 1417630 R hypothetical protein complement(1416608..1417630) Aliivibrio salmonicida LFI1238 6986984 YP_002262768.1 CDS VSAL_I1306 NC_011312.1 1417791 1419131 D GntR family transcriptional regulator 1417791..1419131 Aliivibrio salmonicida LFI1238 6986985 YP_002262769.1 CDS VSAL_I1307 NC_011312.1 1419148 1419978 D antibiotic resistance protein 1419148..1419978 Aliivibrio salmonicida LFI1238 6986986 YP_002262770.1 CDS VSAL_I1308 NC_011312.1 1419991 1420344 R transposase complement(1419991..1420344) Aliivibrio salmonicida LFI1238 6986987 YP_002262771.1 CDS VSAL_I1309 NC_011312.1 1420574 1420996 R transposase complement(1420574..1420996) Aliivibrio salmonicida LFI1238 6986988 YP_002262772.1 CDS VSAL_I1310 NC_011312.1 1421218 1421769 D hypothetical protein 1421218..1421769 Aliivibrio salmonicida LFI1238 6986989 YP_002262773.1 CDS ndh NC_011312.1 1422124 1423413 D NADH dehydrogenase 1422124..1423413 Aliivibrio salmonicida LFI1238 6986990 YP_002262774.1 CDS VSAL_I1312 NC_011312.1 1423587 1424891 D helicase (DEAD/DEAH box helicase) 1423587..1424891 Aliivibrio salmonicida LFI1238 6988886 YP_002262775.1 CDS VSAL_I1313 NC_011312.1 1424901 1425347 D hypothetical protein 1424901..1425347 Aliivibrio salmonicida LFI1238 6986991 YP_002262776.1 CDS VSAL_I1314 NC_011312.1 1425529 1425843 D transposase 1425529..1425843 Aliivibrio salmonicida LFI1238 6986992 YP_002262777.1 CDS VSAL_I1318 NC_011312.1 1429491 1430207 R unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT complement(1429491..1430207) Aliivibrio salmonicida LFI1238 6986996 YP_002262778.1 CDS VSAL_I1319 NC_011312.1 1430200 1431882 R Probably regulates genes involved in cell wall metabolism and genes involved in virulence; membrane receptor, histidine kinase complement(1430200..1431882) Aliivibrio salmonicida LFI1238 6986997 YP_002262779.1 CDS VSAL_I1320 NC_011312.1 1432162 1432713 D membrane protein 1432162..1432713 Aliivibrio salmonicida LFI1238 6986998 YP_002262780.1 CDS VSAL_I1321 NC_011312.1 1432803 1432964 R hypothetical protein complement(1432803..1432964) Aliivibrio salmonicida LFI1238 6986999 YP_002262781.1 CDS VSAL_I1322 NC_011312.1 1433272 1434147 D metalloprotease; heat shock protein HtpX 1433272..1434147 Aliivibrio salmonicida LFI1238 6987000 YP_002262782.1 CDS VSAL_I1323 NC_011312.1 1434291 1434785 D hypothetical protein 1434291..1434785 Aliivibrio salmonicida LFI1238 6987001 YP_002262783.1 CDS VSAL_I1324 NC_011312.1 1434877 1435389 R Expression may be regulated by Fur; hypothetical protein complement(1434877..1435389) Aliivibrio salmonicida LFI1238 6987002 YP_002262784.1 CDS VSAL_I1325 NC_011312.1 1435503 1436786 R Expression may be regulated by Fur; proton glutamate symport protein complement(1435503..1436786) Aliivibrio salmonicida LFI1238 6987003 YP_002262785.1 CDS VSAL_I1326 NC_011312.1 1437217 1438626 D Similar to Pseudomonas sp. Atrazine chlorohydrolase AtzA UniProt:P72156 (474 aa) blastp scores: E()=7e-45; amidohydrolase 1437217..1438626 Aliivibrio salmonicida LFI1238 6987004 YP_002262786.1 CDS VSAL_I1327 NC_011312.1 1438827 1440365 D hypothetical protein 1438827..1440365 Aliivibrio salmonicida LFI1238 6987005 YP_002262787.1 CDS VSAL_I1328 NC_011312.1 1440531 1441082 D membrane associated peptidase 1440531..1441082 Aliivibrio salmonicida LFI1238 6987006 YP_002262788.1 CDS asnC NC_011312.1 1441205 1442605 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1441205..1442605) Aliivibrio salmonicida LFI1238 6987007 YP_002262789.1 CDS VSAL_I1330 NC_011312.1 1442862 1443224 D 6-pyruvoyl tetrahydrobiopterin synthase 1442862..1443224 Aliivibrio salmonicida LFI1238 6988271 YP_002262790.1 CDS VSAL_I1331 NC_011312.1 1443279 1444295 R hypothetical protein complement(1443279..1444295) Aliivibrio salmonicida LFI1238 6987008 YP_002262791.1 CDS sbcD NC_011312.1 1444489 1445733 D with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 1444489..1445733 Aliivibrio salmonicida LFI1238 6987009 YP_002262792.1 CDS sbcC NC_011312.1 1445730 1449410 D nuclease sbcCD subunit C 1445730..1449410 Aliivibrio salmonicida LFI1238 6989223 YP_002262793.1 CDS VSAL_I1334 NC_011312.1 1449467 1449952 D thioesterase 1449467..1449952 Aliivibrio salmonicida LFI1238 6989222 YP_002262794.1 CDS VSAL_I1335 NC_011312.1 1450389 1451582 R transposase complement(1450389..1451582) Aliivibrio salmonicida LFI1238 6987010 YP_002262795.1 CDS VSAL_I1337 NC_011312.1 1452557 1453711 D tyrosine-specific transporter 1452557..1453711 Aliivibrio salmonicida LFI1238 6989404 YP_002262796.1 CDS VSAL_I1339 NC_011312.1 1455044 1455925 D transposase 1455044..1455925 Aliivibrio salmonicida LFI1238 6987013 YP_002262797.1 CDS VSAL_I1340 NC_011312.1 1456036 1456395 D lipoprotein 1456036..1456395 Aliivibrio salmonicida LFI1238 6987014 YP_002262798.1 CDS VSAL_I1341 NC_011312.1 1456444 1456803 D lipoprotein 1456444..1456803 Aliivibrio salmonicida LFI1238 6987015 YP_002262799.1 CDS VSAL_I1342 NC_011312.1 1456867 1457409 R hypothetical protein complement(1456867..1457409) Aliivibrio salmonicida LFI1238 6987016 YP_002262800.1 CDS sdaA NC_011312.1 1457621 1458982 R Expression may be regulated by Fur; L-serine dehydratase 1 complement(1457621..1458982) Aliivibrio salmonicida LFI1238 6987017 YP_002262801.1 CDS sdaC NC_011312.1 1459080 1460330 R serine transporter complement(1459080..1460330) Aliivibrio salmonicida LFI1238 6989224 YP_002262802.1 CDS VSAL_I1345 NC_011312.1 1460522 1461130 R NUDIX hydrolase complement(1460522..1461130) Aliivibrio salmonicida LFI1238 6989225 YP_002262803.1 CDS pabB NC_011312.1 1461130 1462500 R para-aminobenzoate synthase component I complement(1461130..1462500) Aliivibrio salmonicida LFI1238 6987018 YP_002262804.1 CDS VSAL_I1347 NC_011312.1 1462671 1464215 D fumarate hydratase class I 1462671..1464215 Aliivibrio salmonicida LFI1238 6988941 YP_002262805.1 CDS VSAL_I1348 NC_011312.1 1464260 1465141 R transposase complement(1464260..1465141) Aliivibrio salmonicida LFI1238 6987019 YP_002262806.1 CDS VSAL_I1349 NC_011312.1 1465291 1466616 R transposase complement(1465291..1466616) Aliivibrio salmonicida LFI1238 6987020 YP_002262807.1 CDS VSAL_I1350 NC_011312.1 1466801 1467163 D lipoprotein 1466801..1467163 Aliivibrio salmonicida LFI1238 6987021 YP_002262808.1 CDS VSAL_I1351 NC_011312.1 1467216 1468289 D Similar to Pseudomonas aeruginosa Multidrug resistance protein MexA precursor UniProt:P52477 (383 aa) blastp scores: E()=9e-17; multidrug resistance protein precursor 1467216..1468289 Aliivibrio salmonicida LFI1238 6987022 YP_002262809.1 CDS VSAL_I1352 NC_011312.1 1468292 1469371 D Similar to Pseudomonas putida Solvent efflux pump periplasmic linker SrpA precursor UniProt:O31099 (382 aa) fasta scores: E()=9.6e-13, 26.829% id in 369 aa; organic solvent efflux pump precursor (periplasmic linker protein component) 1468292..1469371 Aliivibrio salmonicida LFI1238 6987023 YP_002262810.1 CDS VSAL_I1353 NC_011312.1 1469371 1472448 D Similar to Ralstonia metallidurans Cobalt-zinc-cadmium resistance protein CzcA UniProt:P13511 (1063 aa) blastp scores: E()=2e-66; multi-drug efflux protein 1469371..1472448 Aliivibrio salmonicida LFI1238 6987024 YP_002262811.1 CDS VSAL_I1354 NC_011312.1 1472721 1473107 D hypothetical protein 1472721..1473107 Aliivibrio salmonicida LFI1238 6987025 YP_002262812.1 CDS metC NC_011312.1 1473236 1474426 R catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(1473236..1474426) Aliivibrio salmonicida LFI1238 6987026 YP_002262813.1 CDS VSAL_I1356 NC_011312.1 1474582 1474932 D hypothetical protein 1474582..1474932 Aliivibrio salmonicida LFI1238 6988789 YP_002262814.1 CDS hpc NC_011312.1 1475219 1475737 D secreted protein Hcp-2 (haemolysin co-regulated protein) 1475219..1475737 Aliivibrio salmonicida LFI1238 6987027 YP_002262815.1 CDS VSAL_I1358 NC_011312.1 1475814 1478078 D VgrG preotein, VgrG-2 1475814..1478078 Aliivibrio salmonicida LFI1238 6988677 YP_002262816.1 CDS VSAL_I1359 NC_011312.1 1478060 1478653 D hypothetical protein 1478060..1478653 Aliivibrio salmonicida LFI1238 6987028 YP_002262817.1 CDS VSAL_I1362 NC_011312.1 1482240 1482587 R transposase complement(1482240..1482587) Aliivibrio salmonicida LFI1238 6987031 YP_002262818.1 CDS VSAL_I1363 NC_011312.1 1482584 1482898 R transposase complement(1482584..1482898) Aliivibrio salmonicida LFI1238 6987032 YP_002262819.1 CDS VSAL_I1364 NC_011312.1 1482981 1485653 R CDS may be truncated by the insertion of the downstream IS element and subsequent recombination events; Similar to Aeromonas hydrophila Nuclease NucH UniProt:Q44070 (1070 aa) fasta scores: E()=1.7e-38,38.610% id in 878 aa. CDS is slightly extended at the N-terminus in comparison to orthologues. Probably due to the insertion of the downstream IS element; nuclease complement(1482981..1485653) Aliivibrio salmonicida LFI1238 6987033 YP_002262820.1 CDS VSAL_I1365 NC_011312.1 1485914 1486795 R transposase complement(1485914..1486795) Aliivibrio salmonicida LFI1238 6987034 YP_002262821.1 CDS VSAL_I1366 NC_011312.1 1487015 1487869 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1487015..1487869 Aliivibrio salmonicida LFI1238 6987035 YP_002262822.1 CDS rbsR NC_011312.1 1487925 1488926 R ribose operon repressor complement(1487925..1488926) Aliivibrio salmonicida LFI1238 6987036 YP_002262823.1 CDS rbsK NC_011312.1 1489002 1489919 R catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase complement(1489002..1489919) Aliivibrio salmonicida LFI1238 6989072 YP_002262824.1 CDS rbsB NC_011312.1 1490100 1490978 R periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB complement(1490100..1490978) Aliivibrio salmonicida LFI1238 6989071 YP_002262825.1 CDS rbsC NC_011312.1 1491115 1492086 R functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease complement(1491115..1492086) Aliivibrio salmonicida LFI1238 6989068 YP_002262826.1 CDS rbsA NC_011312.1 1492098 1493612 R with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding protein; D-ribose transporter ATP-binding protein complement(1492098..1493612) Aliivibrio salmonicida LFI1238 6989069 YP_002262827.1 CDS rbsD NC_011312.1 1493673 1494092 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(1493673..1494092) Aliivibrio salmonicida LFI1238 6989067 YP_002262828.1 CDS VSAL_I1373 NC_011312.1 1494476 1494637 D hypothetical protein 1494476..1494637 Aliivibrio salmonicida LFI1238 6989070 YP_002262829.1 CDS VSAL_I1374 NC_011312.1 1494709 1495161 D hypothetical protein 1494709..1495161 Aliivibrio salmonicida LFI1238 6987037 YP_002262830.1 CDS VSAL_I1375 NC_011312.1 1495390 1495632 D Expression may be regulated by Fur; membrane protein 1495390..1495632 Aliivibrio salmonicida LFI1238 6987038 YP_002262831.1 CDS VSAL_I1376 NC_011312.1 1495877 1496020 D Similar to C-terminal part of Vibrio fischeri Ferrichrome-binding protein. UniProt:Q5E573 (178 aa) blastp scores: E()=8e-04; hypothetical protein 1495877..1496020 Aliivibrio salmonicida LFI1238 6987039 YP_002262832.1 CDS VSAL_I1377 NC_011312.1 1496286 1496651 D lipoprotein 1496286..1496651 Aliivibrio salmonicida LFI1238 6987040 YP_002262833.1 CDS VSAL_I1378 NC_011312.1 1496780 1497346 R transposase complement(1496780..1497346) Aliivibrio salmonicida LFI1238 6987041 YP_002262834.1 CDS VSAL_I1379 NC_011312.1 1497364 1497786 R transposase complement(1497364..1497786) Aliivibrio salmonicida LFI1238 6987042 YP_002262835.1 CDS VSAL_I1381 NC_011312.1 1498417 1499034 D lipoprotein 1498417..1499034 Aliivibrio salmonicida LFI1238 6987044 YP_002262836.1 CDS norM NC_011312.1 1499112 1500494 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(1499112..1500494) Aliivibrio salmonicida LFI1238 6987045 YP_002262837.1 CDS ribE NC_011312.1 1500753 1501364 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1500753..1501364 Aliivibrio salmonicida LFI1238 6988901 YP_002262838.1 CDS VSAL_I1384 NC_011312.1 1501380 1501583 R hypothetical protein complement(1501380..1501583) Aliivibrio salmonicida LFI1238 6989099 YP_002262839.1 CDS VSAL_I1385 NC_011312.1 1501813 1502679 R hypothetical protein complement(1501813..1502679) Aliivibrio salmonicida LFI1238 6987046 YP_002262840.1 CDS VSAL_I1386 NC_011312.1 1502924 1503259 D hypothetical protein 1502924..1503259 Aliivibrio salmonicida LFI1238 6987047 YP_002262841.1 CDS VSAL_I1387 NC_011312.1 1503335 1503823 R Similar to Escherichia coli Lipoprotein Spr UniProt:P0AFV4 (188 aa) fasta scores: E()=4.6e-19, 50.000% id in 112 aa; lipoprotein complement(1503335..1503823) Aliivibrio salmonicida LFI1238 6987048 YP_002262842.1 CDS VSAL_I1388 NC_011312.1 1504126 1505718 D ion transporter 1504126..1505718 Aliivibrio salmonicida LFI1238 6987049 YP_002262843.1 CDS rsuA NC_011312.1 1505861 1506550 D ribosomal small subunit pseudouridine synthase A 1505861..1506550 Aliivibrio salmonicida LFI1238 6987050 YP_002262844.1 CDS VSAL_I1390 NC_011312.1 1506586 1507389 R membrane protein complement(1506586..1507389) Aliivibrio salmonicida LFI1238 6989213 YP_002262845.1 CDS VSAL_I1391 NC_011312.1 1507476 1508219 D hypothetical protein 1507476..1508219 Aliivibrio salmonicida LFI1238 6987051 YP_002262846.1 CDS VSAL_I1392 NC_011312.1 1508346 1509254 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1508346..1509254 Aliivibrio salmonicida LFI1238 6987052 YP_002262847.1 CDS VSAL_I1393 NC_011312.1 1509379 1509711 R hypothetical protein complement(1509379..1509711) Aliivibrio salmonicida LFI1238 6987053 YP_002262848.1 CDS VSAL_I1394 NC_011312.1 1510487 1512079 D hypothetical protein 1510487..1512079 Aliivibrio salmonicida LFI1238 6987054 YP_002262849.1 CDS VSAL_I1395 NC_011312.1 1512083 1512886 D membrane protein 1512083..1512886 Aliivibrio salmonicida LFI1238 6987055 YP_002262850.1 CDS VSAL_I1396 NC_011312.1 1513088 1513318 D DNA-damage-inducible protein I (DinI) 1513088..1513318 Aliivibrio salmonicida LFI1238 6987056 YP_002262851.1 CDS moeA NC_011312.1 1513835 1515616 R CDS is extended with approximately 180 aa residues at the N-terminus in comparison to the Escherichia coli orthologue; bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA complement(1513835..1515616) Aliivibrio salmonicida LFI1238 6987057 YP_002262852.1 CDS mobA NC_011312.1 1515613 1516197 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(1515613..1516197) Aliivibrio salmonicida LFI1238 6988818 YP_002262853.1 CDS VSAL_I1399 NC_011312.1 1516209 1516883 R Similar to Escherichia coli Glutamine transport ATP-binding protein GlnQ UniProt:P10346 (240 aa) blastp scores: E()=1e-18; ABC transporter ATP-binding protein complement(1516209..1516883) Aliivibrio salmonicida LFI1238 6988817 YP_002262855.1 CDS tupA NC_011312.1 1517596 1518417 R Similar to Eubacterium acidaminophilum Extracellular tungstate binding protein precursor TupA UniProt:Q93KD6 (286 aa) fasta scores: E()=1e-41, 49.796% id in 245 aa; extracellular tungstate binding protein precursor complement(1517596..1518417) Aliivibrio salmonicida LFI1238 6987058 YP_002262856.1 CDS VSAL_I1403 NC_011312.1 1520143 1522170 D Similar to Escherichia coli Signal transduction histidine-protein kinase AtoS UniProt:Q06067 (608 aa) fasta scores: E()=1e-20, 34.333% id in 300 aa; signal transduction protein, histidine kinase 1520143..1522170 Aliivibrio salmonicida LFI1238 6987059 YP_002262857.1 CDS VSAL_I1404 NC_011312.1 1522197 1522598 D hypothetical protein 1522197..1522598 Aliivibrio salmonicida LFI1238 6987060 YP_002262858.1 CDS VSAL_I1405 NC_011312.1 1522687 1522869 R hypothetical protein complement(1522687..1522869) Aliivibrio salmonicida LFI1238 6987061 YP_002262859.1 CDS VSAL_I1406 NC_011312.1 1523086 1523517 D membrane protein 1523086..1523517 Aliivibrio salmonicida LFI1238 6987062 YP_002262860.1 CDS VSAL_I1407 NC_011312.1 1523869 1524600 D glycosyl transferase family protein 1523869..1524600 Aliivibrio salmonicida LFI1238 6987063 YP_002262861.1 CDS VSAL_I1408 NC_011312.1 1524623 1525201 D membrane protein 1524623..1525201 Aliivibrio salmonicida LFI1238 6987064 YP_002262862.1 CDS VSAL_I1410 NC_011312.1 1526495 1527376 R transposase complement(1526495..1527376) Aliivibrio salmonicida LFI1238 6987066 YP_002262863.1 CDS VSAL_I1411 NC_011312.1 1528352 1528810 D hypothetical protein 1528352..1528810 Aliivibrio salmonicida LFI1238 6987067 YP_002262864.1 CDS VSAL_I1412 NC_011312.1 1528916 1529311 D hypothetical protein 1528916..1529311 Aliivibrio salmonicida LFI1238 6987068 YP_002262865.1 CDS VSAL_I1413 NC_011312.1 1529362 1529850 D hypothetical protein 1529362..1529850 Aliivibrio salmonicida LFI1238 6987069 YP_002262866.1 CDS VSAL_I1415 NC_011312.1 1530171 1530485 D transposase 1530171..1530485 Aliivibrio salmonicida LFI1238 6987070 YP_002262867.1 CDS VSAL_I1416 NC_011312.1 1530482 1530829 D transposase 1530482..1530829 Aliivibrio salmonicida LFI1238 6987071 YP_002262868.1 CDS VSAL_I1417 NC_011312.1 1530901 1532388 D transposase 1530901..1532388 Aliivibrio salmonicida LFI1238 6987072 YP_002262869.1 CDS VSAL_I1418 NC_011312.1 1534103 1534549 D acetyltransferase 1534103..1534549 Aliivibrio salmonicida LFI1238 6987073 YP_002262870.1 CDS VSAL_I1419 NC_011312.1 1534590 1535009 D acetyltransferase 1534590..1535009 Aliivibrio salmonicida LFI1238 6987074 YP_002262871.1 CDS VSAL_I1420 NC_011312.1 1535018 1535806 D hypothetical protein 1535018..1535806 Aliivibrio salmonicida LFI1238 6987075 YP_002262872.1 CDS VSAL_I1421 NC_011312.1 1535830 1536660 D Similar to Escherichia coli 3-mercaptopyruvate sulfurtransferase SseA UniProt:P31142 (280 aa) fasta scores: E()=5.9e-30, 35.507% id in 276 aa; sulfurtransferase (rhodanese-like protein) 1535830..1536660 Aliivibrio salmonicida LFI1238 6987076 YP_002262873.1 CDS VSAL_I1422 NC_011312.1 1536688 1536906 D hypothetical protein 1536688..1536906 Aliivibrio salmonicida LFI1238 6987077 YP_002262874.1 CDS VSAL_I1424 NC_011312.1 1537500 1537976 D acetyltransferase 1537500..1537976 Aliivibrio salmonicida LFI1238 6987079 YP_002262875.1 CDS VSAL_I1425 NC_011312.1 1538051 1538617 R transposase complement(1538051..1538617) Aliivibrio salmonicida LFI1238 6987080 YP_002262876.1 CDS VSAL_I1426 NC_011312.1 1538635 1539057 R transposase complement(1538635..1539057) Aliivibrio salmonicida LFI1238 6987081 YP_002262877.1 CDS VSAL_I1427 NC_011312.1 1539188 1539427 R No significant database matches. Expression may be regulated by Fur; hypothetical protein complement(1539188..1539427) Aliivibrio salmonicida LFI1238 6987082 YP_002262878.1 CDS VSAL_I1428 NC_011312.1 1540076 1540750 R hypothetical protein complement(1540076..1540750) Aliivibrio salmonicida LFI1238 6987083 YP_002262879.1 CDS VSAL_I1430 NC_011312.1 1541787 1542980 R transposase complement(1541787..1542980) Aliivibrio salmonicida LFI1238 6987085 YP_002262880.1 CDS VSAL_I1431 NC_011312.1 1544754 1545284 D acetyltransferase 1544754..1545284 Aliivibrio salmonicida LFI1238 6987086 YP_002262881.1 CDS VSAL_I1432 NC_011312.1 1545349 1545699 D hypothetical protein 1545349..1545699 Aliivibrio salmonicida LFI1238 6987087 YP_002262882.1 CDS VSAL_I1433 NC_011312.1 1546052 1548943 D hypothetical protein 1546052..1548943 Aliivibrio salmonicida LFI1238 6987088 YP_002262883.1 CDS VSAL_I1435 NC_011312.1 1550006 1550791 D hypothetical protein 1550006..1550791 Aliivibrio salmonicida LFI1238 6987090 YP_002262884.1 CDS VSAL_I1436 NC_011312.1 1550854 1551594 D LamB/YcsF family protein 1550854..1551594 Aliivibrio salmonicida LFI1238 6987091 YP_002262885.1 CDS VSAL_I1437 NC_011312.1 1551597 1552316 D Similar to Bacillus subtilis Kinase A inhibitor KipI UniProt:P60495 (240 aa) fasta scores: E()=2.1e-23,34.361% id in 227 aa; allophanate hydrolase subunit 1 1551597..1552316 Aliivibrio salmonicida LFI1238 6987092 YP_002262886.1 CDS VSAL_I1438 NC_011312.1 1552313 1553269 D allophanate hydrolase subunit 2 1552313..1553269 Aliivibrio salmonicida LFI1238 6987093 YP_002262887.1 CDS VSAL_I1439 NC_011312.1 1553364 1553678 D transposase 1553364..1553678 Aliivibrio salmonicida LFI1238 6987094 YP_002262888.1 CDS VSAL_I1441 NC_011312.1 1553950 1554831 R transposase complement(1553950..1554831) Aliivibrio salmonicida LFI1238 6987096 YP_002262889.1 CDS VSAL_I1442 NC_011312.1 1555101 1556588 D transposase 1555101..1556588 Aliivibrio salmonicida LFI1238 6987097 YP_002262890.1 CDS VSAL_I1443 NC_011312.1 1556716 1557957 D Similar to Escherichia coli Manganese transport protein MntH UniProt:P0A769 (412 aa) fasta scores: E()=1.8e-05, 21.792% id in 413 aa; transmembrane transport protein 1556716..1557957 Aliivibrio salmonicida LFI1238 6987098 YP_002262891.1 CDS VSAL_I1445 NC_011312.1 1558822 1560015 R transposase complement(1558822..1560015) Aliivibrio salmonicida LFI1238 6987100 YP_002262892.1 CDS mltC NC_011312.1 1562147 1563268 D membrane-bound lytic murein transglycosylase C 1562147..1563268 Aliivibrio salmonicida LFI1238 6987101 YP_002262893.1 CDS VSAL_I1447 NC_011312.1 1563304 1565457 D Possible alternative translational start site after codon 11; metal dependent phosphohydrolases 1563304..1565457 Aliivibrio salmonicida LFI1238 6988811 YP_002262894.1 CDS VSAL_I1448 NC_011312.1 1565543 1566394 R formate dehydrogenase accessory protein complement(1565543..1566394) Aliivibrio salmonicida LFI1238 6987102 YP_002262895.1 CDS VSAL_I1449 NC_011312.1 1566536 1567543 D hypothetical protein 1566536..1567543 Aliivibrio salmonicida LFI1238 6987103 YP_002262896.1 CDS VSAL_I1450 NC_011312.1 1567750 1569426 D Expression may be regulated by Fur; ferredoxin 1567750..1569426 Aliivibrio salmonicida LFI1238 6987104 YP_002262897.1 CDS VSAL_I1451 NC_011312.1 1569431 1570042 D cytoplasmic chaperone TorD 1569431..1570042 Aliivibrio salmonicida LFI1238 6987105 YP_002262898.1 CDS VSAL_I1452 NC_011312.1 1570121 1570318 D hypothetical protein 1570121..1570318 Aliivibrio salmonicida LFI1238 6987106 YP_002262899.1 CDS fdhA NC_011312.1 1570330 1573185 D formate dehydrogenase 1570330..1573185 Aliivibrio salmonicida LFI1238 6987107 YP_002262900.1 CDS fdhB NC_011312.1 1573197 1573805 D formate dehydrogenase iron-sulfur subunit 1573197..1573805 Aliivibrio salmonicida LFI1238 6988485 YP_002262901.1 CDS fdnI NC_011312.1 1573822 1574841 D Similar to Escherichia coli Formate dehydrogenase,nitrate-inducible, cytochrome b556(fdn) subunit FdnI UniProt:P0AEK7 (217 aa) fasta scores: E()=1.7e-14, 28.899% id in 218 aa; formate dehydrogenase 1573822..1574841 Aliivibrio salmonicida LFI1238 6988486 YP_002262902.1 CDS rimL NC_011312.1 1575087 1575620 D ribosomal-protein-serine acetyltransferase 1575087..1575620 Aliivibrio salmonicida LFI1238 6988487 YP_002262903.1 CDS VSAL_I1457 NC_011312.1 1575814 1576692 D hypothetical protein 1575814..1576692 Aliivibrio salmonicida LFI1238 6989105 YP_002262904.1 CDS VSAL_I1459 NC_011312.1 1578104 1578985 D transposase 1578104..1578985 Aliivibrio salmonicida LFI1238 6987109 YP_002262905.1 CDS VSAL_I1460 NC_011312.1 1579165 1579944 D AraC family transcriptional regulator 1579165..1579944 Aliivibrio salmonicida LFI1238 6987110 YP_002262906.1 CDS VSAL_I1463 NC_011312.1 1581620 1582186 R transposase complement(1581620..1582186) Aliivibrio salmonicida LFI1238 6987112 YP_002262907.1 CDS VSAL_I1464 NC_011312.1 1582204 1582626 R transposase complement(1582204..1582626) Aliivibrio salmonicida LFI1238 6987113 YP_002262908.1 CDS VSAL_I1465 NC_011312.1 1583625 1583840 D hypothetical protein 1583625..1583840 Aliivibrio salmonicida LFI1238 6987114 YP_002262909.1 CDS VSAL_I1466 NC_011312.1 1583876 1584832 R transposase complement(1583876..1584832) Aliivibrio salmonicida LFI1238 6987115 YP_002262910.1 CDS VSAL_I1467 NC_011312.1 1585157 1585579 D Similar to Vibrio cholerae Hypothetical protein UniProt:Q9KMD9 (97 aa) fasta scores: E()=8.2e-11, 79.310% id in 58 aa. CDS is extended at the N-terminus in comparison to orthologues; hypothetical protein 1585157..1585579 Aliivibrio salmonicida LFI1238 6987116 YP_002262911.1 CDS VSAL_I1469 NC_011312.1 1585901 1586185 R plasmid stabilisation system protein complement(1585901..1586185) Aliivibrio salmonicida LFI1238 6987118 YP_002262912.1 CDS VSAL_I1470 NC_011312.1 1586175 1586423 R hypothetical protein complement(1586175..1586423) Aliivibrio salmonicida LFI1238 6987119 YP_002262913.1 CDS VSAL_I1471 NC_011312.1 1586716 1587504 D Similar to Rhizobium leguminosarum bv. trifolii Trifolitoxin immunity protein TfxG UniProt:P42729 (261 aa) fasta scores: E()=1.9e-12, 35.961% id in 203 aa. Expression may be regulated by Fur; antibiotic resistance protein 1586716..1587504 Aliivibrio salmonicida LFI1238 6987120 YP_002262914.1 CDS VSAL_I1472 NC_011312.1 1587526 1587978 D NUDIX hydrolase 1587526..1587978 Aliivibrio salmonicida LFI1238 6987121 YP_002262915.1 CDS VSAL_I1473 NC_011312.1 1588003 1588503 D acetyltransferase 1588003..1588503 Aliivibrio salmonicida LFI1238 6987122 YP_002262916.1 CDS VSAL_I1475 NC_011312.1 1588718 1589356 D CDS contanins a rare Leucine start codon (TTA). No significant database matches; outer membrane protein 1588718..1589356 Aliivibrio salmonicida LFI1238 6987124 YP_002262917.1 CDS VSAL_I1476 NC_011312.1 1589483 1589914 D membrane protein 1589483..1589914 Aliivibrio salmonicida LFI1238 6987125 YP_002262918.1 CDS VSAL_I1477 NC_011312.1 1590020 1590442 D transposase 1590020..1590442 Aliivibrio salmonicida LFI1238 6987126 YP_002262919.1 CDS VSAL_I1478 NC_011312.1 1590460 1591026 D transposase 1590460..1591026 Aliivibrio salmonicida LFI1238 6987127 YP_002262920.1 CDS VSAL_I1481 NC_011312.1 1592512 1592919 D lipoprotein 1592512..1592919 Aliivibrio salmonicida LFI1238 6987130 YP_002262921.1 CDS VSAL_I1482 NC_011312.1 1592965 1593717 D glucose 1-dehydrogenase 1592965..1593717 Aliivibrio salmonicida LFI1238 6987131 YP_002262922.1 CDS VSAL_I1483 NC_011312.1 1593892 1594086 D hypothetical protein 1593892..1594086 Aliivibrio salmonicida LFI1238 6987132 YP_002262923.1 CDS VSAL_I1484 NC_011312.1 1594166 1594882 R Similar to Chlamydia trachomatis 3-oxoacyl-[acyl-carrier-protein] reductase FabG UniProt:P38004 (247 aa) fasta scores: E()=1.4e-15, 34.146% id in 205 aa; short chain dehydrogenase complement(1594166..1594882) Aliivibrio salmonicida LFI1238 6987133 YP_002262924.1 CDS VSAL_I1485 NC_011312.1 1595114 1595812 D hypothetical protein 1595114..1595812 Aliivibrio salmonicida LFI1238 6987134 YP_002262925.1 CDS VSAL_I1486 NC_011312.1 1596113 1596643 D cold-shock protein 1596113..1596643 Aliivibrio salmonicida LFI1238 6987135 YP_002262926.1 CDS VSAL_I1487 NC_011312.1 1596738 1597091 D hypothetical protein 1596738..1597091 Aliivibrio salmonicida LFI1238 6987136 YP_002262927.1 CDS VSAL_I1488 NC_011312.1 1597367 1598788 D hypothetical protein 1597367..1598788 Aliivibrio salmonicida LFI1238 6987137 YP_002262928.1 CDS VSAL_I1489 NC_011312.1 1599131 1599523 D hypothetical protein 1599131..1599523 Aliivibrio salmonicida LFI1238 6987138 YP_002262929.1 CDS VSAL_I1490 NC_011312.1 1599692 1599907 R hypothetical protein complement(1599692..1599907) Aliivibrio salmonicida LFI1238 6987139 YP_002262930.1 CDS VSAL_I1491 NC_011312.1 1600270 1600692 D transposase 1600270..1600692 Aliivibrio salmonicida LFI1238 6987140 YP_002262931.1 CDS VSAL_I1492 NC_011312.1 1600710 1601276 D transposase 1600710..1601276 Aliivibrio salmonicida LFI1238 6987141 YP_002262932.1 CDS VSAL_I1494 NC_011312.1 1604231 1604734 D acetyltransferase 1604231..1604734 Aliivibrio salmonicida LFI1238 6989017 YP_002262933.1 CDS VSAL_I1495 NC_011312.1 1604742 1605449 R Weakly similar to Myxococcus xanthus CsgA UniProt:P21158 blastp scores: E()=4e-09; hypothetical protein complement(1604742..1605449) Aliivibrio salmonicida LFI1238 6987143 YP_002262934.1 CDS VSAL_I1497 NC_011312.1 1606036 1606524 D lipoprotein 1606036..1606524 Aliivibrio salmonicida LFI1238 6987145 YP_002262935.1 CDS VSAL_I1498 NC_011312.1 1606663 1606860 D hypothetical protein 1606663..1606860 Aliivibrio salmonicida LFI1238 6987146 YP_002262936.1 CDS VSAL_I1499 NC_011312.1 1607000 1607149 D hypothetical protein 1607000..1607149 Aliivibrio salmonicida LFI1238 6987147 YP_002262937.1 CDS VSAL_I1500 NC_011312.1 1607153 1607434 D hypothetical protein 1607153..1607434 Aliivibrio salmonicida LFI1238 6987148 YP_002262938.1 CDS VSAL_I1501 NC_011312.1 1607512 1608273 R hypothetical protein complement(1607512..1608273) Aliivibrio salmonicida LFI1238 6987149 YP_002262939.1 CDS VSAL_I1502 NC_011312.1 1608471 1608926 D acyltransferase 1608471..1608926 Aliivibrio salmonicida LFI1238 6987150 YP_002262940.1 CDS VSAL_I1503 NC_011312.1 1608986 1609150 R hypothetical protein complement(1608986..1609150) Aliivibrio salmonicida LFI1238 6987151 YP_002262941.1 CDS maa NC_011312.1 1609303 1609851 D maltose O-acetyltransferase 1609303..1609851 Aliivibrio salmonicida LFI1238 6987152 YP_002262942.1 CDS VSAL_I1505 NC_011312.1 1609971 1610396 D hypothetical protein 1609971..1610396 Aliivibrio salmonicida LFI1238 6988773 YP_002262943.1 CDS VSAL_I1506 NC_011312.1 1610424 1611224 D phenazine biosynthesis-like protein 1610424..1611224 Aliivibrio salmonicida LFI1238 6987153 YP_002262944.1 CDS VSAL_I1507 NC_011312.1 1611272 1611775 D acetyltransferase 1611272..1611775 Aliivibrio salmonicida LFI1238 6987154 YP_002262945.1 CDS OMT5 NC_011312.1 1611858 1612607 R Similar to Mentha piperita (peppermint) Omt5 UniProt:Q6VMV7 (361 aa) blastp scores: E()=6e-05; methyltransferase complement(1611858..1612607) Aliivibrio salmonicida LFI1238 6987155 YP_002262946.1 CDS VSAL_I1509 NC_011312.1 1612856 1613518 D hypothetical protein 1612856..1613518 Aliivibrio salmonicida LFI1238 6988932 YP_002262947.1 CDS VSAL_I1510 NC_011312.1 1613721 1614158 D hypothetical protein 1613721..1614158 Aliivibrio salmonicida LFI1238 6987156 YP_002262948.1 CDS VSAL_I1511 NC_011312.1 1614222 1614635 D hypothetical protein 1614222..1614635 Aliivibrio salmonicida LFI1238 6987157 YP_002262949.1 CDS VSAL_I1512 NC_011312.1 1614657 1614923 D membrane protein 1614657..1614923 Aliivibrio salmonicida LFI1238 6987158 YP_002262950.1 CDS VSAL_I1513 NC_011312.1 1614978 1615610 D metal dependent phosphohydrolase 1614978..1615610 Aliivibrio salmonicida LFI1238 6987159 YP_002262951.1 CDS VSAL_I1514 NC_011312.1 1615691 1617301 R FAD dependent oxidoreductase complement(1615691..1617301) Aliivibrio salmonicida LFI1238 6987160 YP_002262952.1 CDS VSAL_I1515 NC_011312.1 1617403 1618347 R Similar to Pseudomonas aeruginosa HTH-type transcriptional regulator TrpI UniProt:P11720 (295 aa) fasta scores: E()=7.8e-16, 29.010% id in 293 aa; LysR family transcriptional regulator complement(1617403..1618347) Aliivibrio salmonicida LFI1238 6987161 YP_002262953.1 CDS VSAL_I1516 NC_011312.1 1618507 1619874 D Similar to Pseudomonas aeruginosa Multidrug resistance protein PmpM UniProt:Q9I3Y3 (477 aa) fasta scores: E()=1.3e-20, 27.887% id in 459 aa; multidrug resistance protein 1618507..1619874 Aliivibrio salmonicida LFI1238 6987162 YP_002262954.1 CDS VSAL_I1517 NC_011312.1 1619937 1620593 D hypothetical protein 1619937..1620593 Aliivibrio salmonicida LFI1238 6987163 YP_002262955.1 CDS VSAL_I1518 NC_011312.1 1620854 1620979 D hypothetical protein 1620854..1620979 Aliivibrio salmonicida LFI1238 6987164 YP_002262956.1 CDS VSAL_I1519 NC_011312.1 1621031 1621381 D hypothetical protein 1621031..1621381 Aliivibrio salmonicida LFI1238 6987165 YP_002262957.1 CDS VSAL_I1520 NC_011312.1 1621436 1621981 D hypothetical protein 1621436..1621981 Aliivibrio salmonicida LFI1238 6987166 YP_002262958.1 CDS VSAL_I1522 NC_011312.1 1622833 1623714 R transposase complement(1622833..1623714) Aliivibrio salmonicida LFI1238 6987168 YP_002262959.1 CDS VSAL_I1524 NC_011312.1 1625550 1626425 D Similar to Escherichia coli KefA UniProt:P77338 (1120 aa) blastp scores: E()=4e-12; mechanosensitive ion channel 1625550..1626425 Aliivibrio salmonicida LFI1238 6987170 YP_002262960.1 CDS VSAL_I1526 NC_011312.1 1628943 1629386 R membrane protein complement(1628943..1629386) Aliivibrio salmonicida LFI1238 6987172 YP_002262961.1 CDS VSAL_I1527 NC_011312.1 1629520 1630077 D TetR family transcriptional regulator 1629520..1630077 Aliivibrio salmonicida LFI1238 6987173 YP_002262962.1 CDS VSAL_I1528 NC_011312.1 1630109 1630489 D hypothetical protein 1630109..1630489 Aliivibrio salmonicida LFI1238 6987174 YP_002262963.1 CDS VSAL_I1529 NC_011312.1 1630666 1631229 D glutaredoxin 1630666..1631229 Aliivibrio salmonicida LFI1238 6987175 YP_002262964.1 CDS VSAL_I1530 NC_011312.1 1631245 1631928 D membrane protein 1631245..1631928 Aliivibrio salmonicida LFI1238 6987176 YP_002262965.1 CDS VSAL_I1531 NC_011312.1 1632037 1632198 D hypothetical protein 1632037..1632198 Aliivibrio salmonicida LFI1238 6987177 YP_002262966.1 CDS VSAL_I1532 NC_011312.1 1632486 1633874 D Similar to Pseudomonas sp. Atrazine chlorohydrolase AtzA UniProt:P72156 (474 aa) fasta scores: E()=2.8e-21,27.500% id in 440 aa; amidohydrolase 1632486..1633874 Aliivibrio salmonicida LFI1238 6987178 YP_002262967.1 CDS VSAL_I1533 NC_011312.1 1634028 1634342 D hypothetical protein 1634028..1634342 Aliivibrio salmonicida LFI1238 6987179 YP_002262968.1 CDS VSAL_I1534 NC_011312.1 1634685 1635446 R Similar to Pseudomonas aeruginosa Cyclohexadienyl dehydratase precursor PheC UniProt:Q01269 (268 aa) fasta scores: E()=3.7e-25, 39.910% id in 223 aa; extracellular solute-binding protein complement(1634685..1635446) Aliivibrio salmonicida LFI1238 6987180 YP_002262969.1 CDS VSAL_I1535 NC_011312.1 1635734 1636627 D membrane protein 1635734..1636627 Aliivibrio salmonicida LFI1238 6987181 YP_002262970.1 CDS yeiP NC_011312.1 1636724 1637290 D Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 1636724..1637290 Aliivibrio salmonicida LFI1238 6987182 YP_002262971.1 CDS VSAL_I1537 NC_011312.1 1637373 1638545 R membrane protein complement(1637373..1638545) Aliivibrio salmonicida LFI1238 6989428 YP_002262972.1 CDS yebU NC_011312.1 1638580 1640001 R in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF complement(1638580..1640001) Aliivibrio salmonicida LFI1238 6987183 YP_002262973.1 CDS VSAL_I1539 NC_011312.1 1640170 1642812 R hypothetical protein complement(1640170..1642812) Aliivibrio salmonicida LFI1238 6987184 YP_002262974.1 CDS VSAL_I1540 NC_011312.1 1642790 1644016 R paraquat-inducible membrane protein A complement(1642790..1644016) Aliivibrio salmonicida LFI1238 6987185 YP_002262975.1 CDS VSAL_I1541 NC_011312.1 1644034 1645827 R Similar to Escherichia coli Lipid A export ATP-binding/permease protein MsbA UniProt:P60752 (582 aa) blastp scores: E()=2e-61. Expression may be regulated by Fur; ABC transporter ATP-binding protein complement(1644034..1645827) Aliivibrio salmonicida LFI1238 6987186 YP_002262976.1 CDS VSAL_I1542 NC_011312.1 1645945 1646397 D Expression may be regulated by Fur; hypothetical protein 1645945..1646397 Aliivibrio salmonicida LFI1238 6987187 YP_002262977.1 CDS proQ NC_011312.1 1646621 1647253 D affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 1646621..1647253 Aliivibrio salmonicida LFI1238 6987188 YP_002262978.1 CDS prc NC_011312.1 1647271 1649289 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1647271..1649289 Aliivibrio salmonicida LFI1238 6989014 YP_002262979.1 CDS VSAL_I1545 NC_011312.1 1649358 1650140 D hypothetical protein 1649358..1650140 Aliivibrio salmonicida LFI1238 6989002 YP_002262980.1 CDS VSAL_I1547 NC_011312.1 1653013 1653237 D hypothetical protein 1653013..1653237 Aliivibrio salmonicida LFI1238 6988959 YP_002262981.1 CDS pyrD NC_011312.1 1658502 1659512 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1658502..1659512 Aliivibrio salmonicida LFI1238 6988588 YP_002262982.1 CDS VSAL_I1550 NC_011312.1 1659678 1660268 D Possible alternative translational start site after codon 17; hypothetical protein 1659678..1660268 Aliivibrio salmonicida LFI1238 6989049 YP_002262983.1 CDS rlmL NC_011312.1 1660800 1662956 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1660800..1662956 Aliivibrio salmonicida LFI1238 6987191 YP_002262984.1 CDS VSAL_I1552 NC_011312.1 1662962 1663204 D glutaredoxin 1662962..1663204 Aliivibrio salmonicida LFI1238 6987192 YP_002262985.1 CDS uup NC_011312.1 1663185 1665095 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1663185..1665095 Aliivibrio salmonicida LFI1238 6987193 YP_002262986.1 CDS VSAL_I1554 NC_011312.1 1665104 1666768 D hypothetical protein 1665104..1666768 Aliivibrio salmonicida LFI1238 6989364 YP_002262987.1 CDS rmf NC_011312.1 1666969 1667142 D ribosome modulation factor 1666969..1667142 Aliivibrio salmonicida LFI1238 6987194 YP_002262988.1 CDS fabA NC_011312.1 1667298 1667816 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1667298..1667816) Aliivibrio salmonicida LFI1238 6989114 YP_002262989.1 CDS VSAL_I1557 NC_011312.1 1667882 1669549 R Similar to Escherichia coli protease La homolog YcbZ UniProt:P75867 (586 aa) fasta scores: E()=6.7e-67, 41.525% id in 472 aa; protease La-like protein complement(1667882..1669549) Aliivibrio salmonicida LFI1238 6988463 YP_002262990.1 CDS VSAL_I1558 NC_011312.1 1669730 1670176 D hypothetical protein 1669730..1670176 Aliivibrio salmonicida LFI1238 6987195 YP_002262991.1 CDS VSAL_I1559 NC_011312.1 1670230 1670781 R lipoprotein complement(1670230..1670781) Aliivibrio salmonicida LFI1238 6987196 YP_002262992.1 CDS VSAL_I1560 NC_011312.1 1671140 1673233 R response regulator, histidine kinase complement(1671140..1673233) Aliivibrio salmonicida LFI1238 6987197 YP_002262993.1 CDS VSAL_I1561 NC_011312.1 1673234 1674418 R hypothetical protein complement(1673234..1674418) Aliivibrio salmonicida LFI1238 6987198 YP_002262994.1 CDS VSAL_I1562 NC_011312.1 1674517 1674972 R hypothetical protein complement(1674517..1674972) Aliivibrio salmonicida LFI1238 6987199 YP_002262995.1 CDS ctaD NC_011312.1 1675242 1676672 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1675242..1676672 Aliivibrio salmonicida LFI1238 6987200 YP_002262996.1 CDS fixO NC_011312.1 1676685 1677296 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1676685..1677296 Aliivibrio salmonicida LFI1238 6988361 YP_002262997.1 CDS VSAL_I1565 NC_011312.1 1677307 1677489 D cbb3-type cytochrome oxidase subunit 1677307..1677489 Aliivibrio salmonicida LFI1238 6988498 YP_002262998.1 CDS VSAL_I1566 NC_011312.1 1677486 1678460 D diheme cytochrome c 1677486..1678460 Aliivibrio salmonicida LFI1238 6987201 YP_002262999.1 CDS VSAL_I1567 NC_011312.1 1678533 1679018 D hypothetical protein 1678533..1679018 Aliivibrio salmonicida LFI1238 6987202 YP_002263000.1 CDS VSAL_I1568 NC_011312.1 1679025 1681400 D Similar to Bradyrhizobium japonicum Nitrogen fixation protein FixI UniProt:Q59207 (730 aa) fasta scores: E()=9.9e-70, 33.884% id in 726 aa; cation-transporting ATPase 1679025..1681400 Aliivibrio salmonicida LFI1238 6987203 YP_002263001.1 CDS VSAL_I1569 NC_011312.1 1681393 1681563 D Similar to Rhizobium meliloti Nitrogen fixation protein FixS UniProt:P18399 (55 aa) blastp scores: E()=6e-04; cytochrome oxidase maturation protein (cbb3-t) 1681393..1681563 Aliivibrio salmonicida LFI1238 6987204 YP_002263002.1 CDS VSAL_I1570 NC_011312.1 1681553 1682227 D membrane protein 1681553..1682227 Aliivibrio salmonicida LFI1238 6987205 YP_002263003.1 CDS fnr NC_011312.1 1682324 1683076 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1682324..1683076 Aliivibrio salmonicida LFI1238 6987206 YP_002263004.1 CDS uspE NC_011312.1 1683229 1684173 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1683229..1684173 Aliivibrio salmonicida LFI1238 6988551 YP_002263005.1 CDS VSAL_I1573 NC_011312.1 1684330 1685253 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1684330..1685253 Aliivibrio salmonicida LFI1238 6989362 YP_002263006.1 CDS VSAL_I1574 NC_011312.1 1685410 1685724 D transposase 1685410..1685724 Aliivibrio salmonicida LFI1238 6987207 YP_002263007.1 CDS VSAL_I1575 NC_011312.1 1685721 1686068 D transposase 1685721..1686068 Aliivibrio salmonicida LFI1238 6987208 YP_002263008.1 CDS VSAL_I1576 NC_011312.1 1686140 1687627 D transposase 1686140..1687627 Aliivibrio salmonicida LFI1238 6987209 YP_002263009.1 CDS VSAL_I1577 NC_011312.1 1687651 1688304 R hypothetical protein complement(1687651..1688304) Aliivibrio salmonicida LFI1238 6987210 YP_002263010.1 CDS VSAL_I1578 NC_011312.1 1688306 1689043 R lipoprotein complement(1688306..1689043) Aliivibrio salmonicida LFI1238 6987211 YP_002263011.1 CDS VSAL_I1579 NC_011312.1 1689051 1689860 R membrane protein complement(1689051..1689860) Aliivibrio salmonicida LFI1238 6987212 YP_002263012.1 CDS potA NC_011312.1 1690197 1691315 D functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 1690197..1691315 Aliivibrio salmonicida LFI1238 6987213 YP_002263013.1 CDS potB NC_011312.1 1691299 1692156 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter 1691299..1692156 Aliivibrio salmonicida LFI1238 6988994 YP_002263014.1 CDS potC NC_011312.1 1692156 1692926 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter 1692156..1692926 Aliivibrio salmonicida LFI1238 6988995 YP_002263015.1 CDS potD NC_011312.1 1692980 1694068 D Possible alternative translational start site after codon 13; spermidine/putrescine-binding periplasmic protein precursor (SPBP) 1692980..1694068 Aliivibrio salmonicida LFI1238 6988996 YP_002263016.1 CDS potD NC_011312.1 1694251 1695294 D Expression may be stress-induced; spermidine/putrescine-binding periplasmic protein precursor (SPBP) 1694251..1695294 Aliivibrio salmonicida LFI1238 6988997 YP_002263017.1 CDS npdA NC_011312.1 1695383 1696096 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(1695383..1696096) Aliivibrio salmonicida LFI1238 6988998 YP_002263018.1 CDS VSAL_I1586 NC_011312.1 1696300 1697211 D LysR family transcriptional regulator 1696300..1697211 Aliivibrio salmonicida LFI1238 6988905 YP_002263019.1 CDS VSAL_I1587 NC_011312.1 1697451 1698671 D Similar to Escherichia coli inner membrane transport protein YeiJ UniProt:P33021 (416 aa) fasta scores: E()=8.5e-59, 43.301% id in 418 aa; sodium-dependent nucleoside transporter 1697451..1698671 Aliivibrio salmonicida LFI1238 6987214 YP_002263020.1 CDS VSAL_I1588 NC_011312.1 1698752 1699042 R hypothetical protein complement(1698752..1699042) Aliivibrio salmonicida LFI1238 6987215 YP_002263021.1 CDS VSAL_I1589 NC_011312.1 1699160 1699471 R hypothetical protein complement(1699160..1699471) Aliivibrio salmonicida LFI1238 6987216 YP_002263022.1 CDS qnr NC_011312.1 1699484 1700140 R quinolone resistance determinant QnrC complement(1699484..1700140) Aliivibrio salmonicida LFI1238 6987217 YP_002263023.1 CDS VSAL_I1591 NC_011312.1 1700575 1700991 R hypothetical protein complement(1700575..1700991) Aliivibrio salmonicida LFI1238 6989056 YP_002263024.1 CDS VSAL_I1592 NC_011312.1 1701252 1701584 R hypothetical protein complement(1701252..1701584) Aliivibrio salmonicida LFI1238 6987218 YP_002263025.1 CDS VSAL_I1593 NC_011312.1 1701633 1701962 R hypothetical protein complement(1701633..1701962) Aliivibrio salmonicida LFI1238 6987219 YP_002263026.1 CDS VSAL_I1594 NC_011312.1 1701980 1702384 R NUDIX hydrolase complement(1701980..1702384) Aliivibrio salmonicida LFI1238 6987220 YP_002263027.1 CDS VSAL_I1595 NC_011312.1 1702528 1703538 D lipoprotein 1702528..1703538 Aliivibrio salmonicida LFI1238 6987221 YP_002263028.1 CDS VSAL_I1596 NC_011312.1 1703556 1704059 R membrane protein complement(1703556..1704059) Aliivibrio salmonicida LFI1238 6987222 YP_002263029.1 CDS VSAL_I1597 NC_011312.1 1704213 1706168 R Possible alternative translational start site after codon 10; soluble lytic murein transglycosylase precursor complement(1704213..1706168) Aliivibrio salmonicida LFI1238 6987223 YP_002263030.1 CDS VSAL_I1598 NC_011312.1 1706247 1706543 R membrane protein complement(1706247..1706543) Aliivibrio salmonicida LFI1238 6987224 YP_002263031.1 CDS VSAL_I1599 NC_011312.1 1706725 1708062 D polysaccharide deacetylase 1706725..1708062 Aliivibrio salmonicida LFI1238 6987225 YP_002263032.1 CDS VSAL_I1600 NC_011312.1 1708107 1708508 R hypothetical protein complement(1708107..1708508) Aliivibrio salmonicida LFI1238 6987226 YP_002263033.1 CDS VSAL_I1601 NC_011312.1 1708787 1709668 D transposase 1708787..1709668 Aliivibrio salmonicida LFI1238 6987227 YP_002263034.1 CDS VSAL_I1603 NC_011312.1 1710845 1711087 D hypothetical protein 1710845..1711087 Aliivibrio salmonicida LFI1238 6987229 YP_002263035.1 CDS VSAL_I1605 NC_011312.1 1711527 1712408 R transposase complement(1711527..1712408) Aliivibrio salmonicida LFI1238 6987231 YP_002263036.1 CDS VSAL_I1606 NC_011312.1 1712535 1712927 D hypothetical protein 1712535..1712927 Aliivibrio salmonicida LFI1238 6987232 YP_002263037.1 CDS VSAL_I1607 NC_011312.1 1713042 1714034 R 3',5'-cyclic-nucleotide phosphodiesterase complement(1713042..1714034) Aliivibrio salmonicida LFI1238 6987233 YP_002263038.1 CDS galR NC_011312.1 1714289 1715311 D Expression may be regulated by Fur; GalR family transcriptional regulator 1714289..1715311 Aliivibrio salmonicida LFI1238 6987234 YP_002263039.1 CDS VSAL_I1609 NC_011312.1 1715448 1716902 D Similar to Bacillus subtilis Malate-2H(+)/Na(+)-lactate antiporter MleN UniProt:P54571 (468 aa) fasta scores: E()=3.1e-28, 33.772% id in 456 aa; sodium/proton antiporter 1715448..1716902 Aliivibrio salmonicida LFI1238 6988581 YP_002263040.1 CDS VSAL_I1610 NC_011312.1 1716912 1718084 D class I and II aminotransferase 1716912..1718084 Aliivibrio salmonicida LFI1238 6987235 YP_002263041.1 CDS VSAL_I1611 NC_011312.1 1718165 1718992 R AraC family transcriptional regulator complement(1718165..1718992) Aliivibrio salmonicida LFI1238 6987236 YP_002263042.1 CDS VSAL_I1612 NC_011312.1 1719060 1719956 D integral membrane protein 1719060..1719956 Aliivibrio salmonicida LFI1238 6987237 YP_002263043.1 CDS manA NC_011312.1 1720037 1721143 R mannose-6-phosphate isomerase (phosphomannose isomerase) complement(1720037..1721143) Aliivibrio salmonicida LFI1238 6987238 YP_002263044.1 CDS malY NC_011312.1 1721143 1722312 R cystathionine beta-lyase complement(1721143..1722312) Aliivibrio salmonicida LFI1238 6988779 YP_002263045.1 CDS malX NC_011312.1 1722394 1723971 R phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; bifunctional PTS system maltose and glucose-specific transporter subunits IICB complement(1722394..1723971) Aliivibrio salmonicida LFI1238 6988778 YP_002263046.1 CDS VSAL_I1616 NC_011312.1 1724094 1724516 D transposase 1724094..1724516 Aliivibrio salmonicida LFI1238 6988777 YP_002263047.1 CDS VSAL_I1617 NC_011312.1 1724534 1725100 D transposase 1724534..1725100 Aliivibrio salmonicida LFI1238 6987239 YP_002263048.1 CDS malI NC_011312.1 1725340 1726362 D regulates malXY which are involved in maltose-glucose transport; DNA-binding transcriptional repressor MalI 1725340..1726362 Aliivibrio salmonicida LFI1238 6987240 YP_002263049.1 CDS VSAL_I1619 NC_011312.1 1726446 1727318 R integral membrane protein complement(1726446..1727318) Aliivibrio salmonicida LFI1238 6988775 YP_002263050.1 CDS VSAL_I1620 NC_011312.1 1727439 1727861 D transposase 1727439..1727861 Aliivibrio salmonicida LFI1238 6987241 YP_002263051.1 CDS VSAL_I1621 NC_011312.1 1727879 1728445 D transposase 1727879..1728445 Aliivibrio salmonicida LFI1238 6987242 YP_002263052.1 CDS VSAL_I1622 NC_011312.1 1728578 1728988 R cell wall lytic enzyme complement(1728578..1728988) Aliivibrio salmonicida LFI1238 6987243 YP_002263053.1 CDS VSAL_I1623 NC_011312.1 1729423 1730166 D sucrose-6F-phosphate phosphohydrolase 1729423..1730166 Aliivibrio salmonicida LFI1238 6987244 YP_002263054.1 CDS elbB NC_011312.1 1730343 1730993 R isoprenoid biosynthesis protein with amidotransferase-like domain complement(1730343..1730993) Aliivibrio salmonicida LFI1238 6987245 YP_002263055.1 CDS VSAL_I1625 NC_011312.1 1731257 1731661 D hypothetical protein 1731257..1731661 Aliivibrio salmonicida LFI1238 6988439 YP_002263056.1 CDS VSAL_I1626 NC_011312.1 1731713 1732441 D MltA-interacting protein MipA 1731713..1732441 Aliivibrio salmonicida LFI1238 6987246 YP_002263057.1 CDS VSAL_I1627 NC_011312.1 1732609 1733025 D membrane protein 1732609..1733025 Aliivibrio salmonicida LFI1238 6987247 YP_002263058.1 CDS VSAL_I1628 NC_011312.1 1733066 1734028 D radical SAM superfamily protein 1733066..1734028 Aliivibrio salmonicida LFI1238 6987248 YP_002263059.1 CDS VSAL_I1630 NC_011312.1 1734710 1735324 D hypothetical protein 1734710..1735324 Aliivibrio salmonicida LFI1238 6987250 YP_002263060.1 CDS VSAL_I1632 NC_011312.1 1736783 1737205 D transposase 1736783..1737205 Aliivibrio salmonicida LFI1238 6987252 YP_002263061.1 CDS VSAL_I1633 NC_011312.1 1737223 1737789 D transposase 1737223..1737789 Aliivibrio salmonicida LFI1238 6987253 YP_002263062.1 CDS VSAL_I1634 NC_011312.1 1737876 1738826 D hypothetical protein 1737876..1738826 Aliivibrio salmonicida LFI1238 6987254 YP_002263063.1 CDS mtnK NC_011312.1 1738833 1740002 D phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 1738833..1740002 Aliivibrio salmonicida LFI1238 6987255 YP_002263064.1 CDS VSAL_I1636 NC_011312.1 1740065 1741708 R Weakly similar to Vibrio cholerae TcpI UniProt:P29486 (620 aa) fasta scores: E()=1.1e-28, 33.588% id in 393 aa; methyl-accepting chemotaxis protein complement(1740065..1741708) Aliivibrio salmonicida LFI1238 6987256 YP_002263065.1 CDS VSAL_I1637 NC_011312.1 1741945 1742901 D transposase 1741945..1742901 Aliivibrio salmonicida LFI1238 6987257 YP_002263066.1 CDS VSAL_I1638 NC_011312.1 1743084 1743371 D phage protein 1743084..1743371 Aliivibrio salmonicida LFI1238 6987258 YP_002263067.1 CDS VSAL_I1639 NC_011312.1 1743368 1743871 D phage protein 1743368..1743871 Aliivibrio salmonicida LFI1238 6987259 YP_002263068.1 CDS VSAL_I1640 NC_011312.1 1744160 1744405 R phage protein complement(1744160..1744405) Aliivibrio salmonicida LFI1238 6987260 YP_002263069.1 CDS VSAL_I1641 NC_011312.1 1744395 1744658 R phage protein complement(1744395..1744658) Aliivibrio salmonicida LFI1238 6987261 YP_002263070.1 CDS VSAL_I1642 NC_011312.1 1744838 1745956 R phage protein complement(1744838..1745956) Aliivibrio salmonicida LFI1238 6987262 YP_002263071.1 CDS VSAL_I1643 NC_011312.1 1745949 1746257 R phage protein complement(1745949..1746257) Aliivibrio salmonicida LFI1238 6987263 YP_002263072.1 CDS VSAL_I1644 NC_011312.1 1746239 1746901 R phage protein complement(1746239..1746901) Aliivibrio salmonicida LFI1238 6987264 YP_002263073.1 CDS VSAL_I1645 NC_011312.1 1747082 1747396 R DNA-binding protein, phage gene complement(1747082..1747396) Aliivibrio salmonicida LFI1238 6987265 YP_002263074.1 CDS VSAL_I1646 NC_011312.1 1747383 1747739 R phage protein complement(1747383..1747739) Aliivibrio salmonicida LFI1238 6987266 YP_002263075.1 CDS VSAL_I1647 NC_011312.1 1747924 1748379 R membrane protein, phage gene complement(1747924..1748379) Aliivibrio salmonicida LFI1238 6987267 YP_002263076.1 CDS VSAL_I1648 NC_011312.1 1748538 1748993 R phage protein complement(1748538..1748993) Aliivibrio salmonicida LFI1238 6987268 YP_002263077.1 CDS VSAL_I1649 NC_011312.1 1749138 1749884 R membrane protein, phage gene complement(1749138..1749884) Aliivibrio salmonicida LFI1238 6987269 YP_002263078.1 CDS VSAL_I1650 NC_011312.1 1750329 1750532 R Doubtful CDS, poor translational start site; membrane protein, phage gene complement(1750329..1750532) Aliivibrio salmonicida LFI1238 6987270 YP_002263079.1 CDS VSAL_I1651 NC_011312.1 1750561 1751307 R phage protein complement(1750561..1751307) Aliivibrio salmonicida LFI1238 6987271 YP_002263080.1 CDS VSAL_I1652 NC_011312.1 1751427 1752308 R transposase complement(1751427..1752308) Aliivibrio salmonicida LFI1238 6987272 YP_002263081.1 CDS VSAL_I1654 NC_011312.1 1753065 1753376 D transposase 1753065..1753376 Aliivibrio salmonicida LFI1238 6987274 YP_002263082.1 CDS VSAL_I1655 NC_011312.1 1753373 1753720 D transposase 1753373..1753720 Aliivibrio salmonicida LFI1238 6987275 YP_002263083.1 CDS VSAL_I1656 NC_011312.1 1753792 1755279 D transposase 1753792..1755279 Aliivibrio salmonicida LFI1238 6987276 YP_002263084.1 CDS VSAL_I1658 NC_011312.1 1756764 1757726 D Similar to Elizabethkingia miricola n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase precursor UniProt:Q47898 (340 aa) fasta scores: E()=7.5e-31, 37.050% id in 278 aa; glycosylasparaginase 1756764..1757726 Aliivibrio salmonicida LFI1238 6987278 YP_002263085.1 CDS VSAL_I1659 NC_011312.1 1757741 1758046 D PTS system, Lactose/Cellobiose specific IIB subunit 1757741..1758046 Aliivibrio salmonicida LFI1238 6987279 YP_002263086.1 CDS chbA NC_011312.1 1758057 1758377 D PTS system lactose/cellobiose specific transporter subunit IIA 1758057..1758377 Aliivibrio salmonicida LFI1238 6987280 YP_002263087.1 CDS VSAL_I1662 NC_011312.1 1758749 1759063 D transposase 1758749..1759063 Aliivibrio salmonicida LFI1238 6987281 YP_002263088.1 CDS VSAL_I1663 NC_011312.1 1759060 1759407 D transposase 1759060..1759407 Aliivibrio salmonicida LFI1238 6987282 YP_002263089.1 CDS VSAL_I1664 NC_011312.1 1759479 1760966 D transposase 1759479..1760966 Aliivibrio salmonicida LFI1238 6987283 YP_002263090.1 CDS VSAL_I1665 NC_011312.1 1761156 1761431 D hypothetical protein 1761156..1761431 Aliivibrio salmonicida LFI1238 6987284 YP_002263091.1 CDS VSAL_I1666 NC_011312.1 1761434 1761961 D hypothetical protein 1761434..1761961 Aliivibrio salmonicida LFI1238 6987285 YP_002263092.1 CDS VSAL_I1667 NC_011312.1 1761998 1762663 R hypothetical protein complement(1761998..1762663) Aliivibrio salmonicida LFI1238 6987286 YP_002263093.1 CDS ibpA NC_011312.1 1763023 1763442 D small heat shock protein IbpA (16 kDa heat shock protein A) 1763023..1763442 Aliivibrio salmonicida LFI1238 6987287 YP_002263094.1 CDS dnaK NC_011312.1 1763657 1765555 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1763657..1765555 Aliivibrio salmonicida LFI1238 6988697 YP_002263095.1 CDS VSAL_I1670 NC_011312.1 1765750 1766061 D transposase 1765750..1766061 Aliivibrio salmonicida LFI1238 6988417 YP_002263096.1 CDS VSAL_I1671 NC_011312.1 1766058 1766405 D transposase 1766058..1766405 Aliivibrio salmonicida LFI1238 6987288 YP_002263097.1 CDS VSAL_I1672 NC_011312.1 1766477 1767964 D transposase 1766477..1767964 Aliivibrio salmonicida LFI1238 6987289 YP_002263098.1 CDS VSAL_I1673 NC_011312.1 1768022 1768630 R DNA repair protein complement(1768022..1768630) Aliivibrio salmonicida LFI1238 6987290 YP_002263099.1 CDS VSAL_I1674 NC_011312.1 1768823 1769839 D hypothetical protein 1768823..1769839 Aliivibrio salmonicida LFI1238 6987291 YP_002263100.1 CDS VSAL_I1675 NC_011312.1 1769971 1770141 D hypothetical protein 1769971..1770141 Aliivibrio salmonicida LFI1238 6987292 YP_002263101.1 CDS aqpZ NC_011312.1 1770234 1770923 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z complement(1770234..1770923) Aliivibrio salmonicida LFI1238 6987293 YP_002263102.1 CDS VSAL_I1677 NC_011312.1 1771566 1772036 D hypothetical protein 1771566..1772036 Aliivibrio salmonicida LFI1238 6988244 YP_002263103.1 CDS VSAL_I1678 NC_011312.1 1772086 1773774 D hypothetical protein 1772086..1773774 Aliivibrio salmonicida LFI1238 6987294 YP_002263104.1 CDS sbcB NC_011312.1 1775608 1777032 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1775608..1777032 Aliivibrio salmonicida LFI1238 6987296 YP_002263105.1 CDS VSAL_I1681 NC_011312.1 1777055 1777387 D Similar to Escherichia coli membrane protein YohJ UniProt:P60632 (132 aa) fasta scores: E()=3e-11, 44.211% id in 95 aa; hypothetical protein 1777055..1777387 Aliivibrio salmonicida LFI1238 6989221 YP_002263106.1 CDS VSAL_I1683 NC_011312.1 1777695 1778774 D transposase 1777695..1778774 Aliivibrio salmonicida LFI1238 6987298 YP_002263107.1 CDS cdd NC_011312.1 1779190 1780098 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1779190..1780098 Aliivibrio salmonicida LFI1238 6987299 YP_002263108.1 CDS VSAL_I1685 NC_011312.1 1780153 1781319 R amidase complement(1780153..1781319) Aliivibrio salmonicida LFI1238 6988313 YP_002263109.1 CDS purT NC_011312.1 1781538 1782713 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1781538..1782713 Aliivibrio salmonicida LFI1238 6987300 YP_002263110.1 CDS aspC NC_011312.1 1782903 1784102 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1782903..1784102 Aliivibrio salmonicida LFI1238 6989045 YP_002263111.1 CDS VSAL_I1688 NC_011312.1 1784225 1785415 R hypothetical protein complement(1784225..1785415) Aliivibrio salmonicida LFI1238 6988273 YP_002263112.1 CDS cysB NC_011312.1 1785450 1786424 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(1785450..1786424) Aliivibrio salmonicida LFI1238 6987301 YP_002263113.1 CDS VSAL_I1690 NC_011312.1 1786702 1787466 D hypothetical protein 1786702..1787466 Aliivibrio salmonicida LFI1238 6988371 YP_002263114.1 CDS VSAL_I1692 NC_011312.1 1787903 1788784 R transposase complement(1787903..1788784) Aliivibrio salmonicida LFI1238 6988804 YP_002263115.1 CDS VSAL_I1693 NC_011312.1 1789542 1789946 D hypothetical protein 1789542..1789946 Aliivibrio salmonicida LFI1238 6987303 YP_002263116.1 CDS VSAL_I1694 NC_011312.1 1789950 1790333 R Expression may be regulated by Fur; hypothetical protein complement(1789950..1790333) Aliivibrio salmonicida LFI1238 6987304 YP_002263117.1 CDS VSAL_I1695 NC_011312.1 1790585 1792273 R hypothetical protein complement(1790585..1792273) Aliivibrio salmonicida LFI1238 6987305 YP_002263118.1 CDS VSAL_I1696 NC_011312.1 1792347 1792634 R glutaredoxin-3 (grx3) complement(1792347..1792634) Aliivibrio salmonicida LFI1238 6987306 YP_002263119.1 CDS VSAL_I1697 NC_011312.1 1792702 1793448 R hypothetical protein complement(1792702..1793448) Aliivibrio salmonicida LFI1238 6987307 YP_002263120.1 CDS VSAL_I1698 NC_011312.1 1793641 1794744 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1793641..1794744 Aliivibrio salmonicida LFI1238 6987308 YP_002263121.1 CDS VSAL_I1699 NC_011312.1 1794854 1795387 R Possible alternative translational start site after codon 20; outer membrane protein, OmpA-like complement(1794854..1795387) Aliivibrio salmonicida LFI1238 6987309 YP_002263122.1 CDS hrpA NC_011312.1 1795434 1799330 R involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA complement(1795434..1799330) Aliivibrio salmonicida LFI1238 6987310 YP_002263123.1 CDS VSAL_I1701 NC_011312.1 1799568 1800635 D Similar to Vibrio cholerae outer membrane porin OmpA UniProt:O31154 (321 aa) fasta scores: E()=3e-19, 33.225% id in 307 aa; outer membrane protein, OmpA family 1799568..1800635 Aliivibrio salmonicida LFI1238 6988680 YP_002263124.1 CDS VSAL_I1703 NC_011312.1 1802253 1803134 R transposase complement(1802253..1803134) Aliivibrio salmonicida LFI1238 6987312 YP_002263125.1 CDS VSAL_I1705 NC_011312.1 1804059 1804385 D hypothetical protein 1804059..1804385 Aliivibrio salmonicida LFI1238 6987314 YP_002263126.1 CDS VSAL_I1706 NC_011312.1 1804404 1804676 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(1804404..1804676) Aliivibrio salmonicida LFI1238 6987315 YP_002263127.1 CDS VSAL_I1708 NC_011312.1 1805105 1806295 D transposase 1805105..1806295 Aliivibrio salmonicida LFI1238 6987317 YP_002263128.1 CDS VSAL_I1709 NC_011312.1 1806799 1807989 D hypothetical protein 1806799..1807989 Aliivibrio salmonicida LFI1238 6987318 YP_002263129.1 CDS VSAL_I1711 NC_011312.1 1821513 1821863 D hypothetical protein 1821513..1821863 Aliivibrio salmonicida LFI1238 6987320 YP_002263130.1 CDS glpQ NC_011312.1 1821978 1823036 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(1821978..1823036) Aliivibrio salmonicida LFI1238 6987321 YP_002263131.1 CDS glpT NC_011312.1 1823160 1824611 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter complement(1823160..1824611) Aliivibrio salmonicida LFI1238 6988601 YP_002263132.1 CDS VSAL_I1714 NC_011312.1 1824758 1825072 D transposase 1824758..1825072 Aliivibrio salmonicida LFI1238 6988602 YP_002263133.1 CDS VSAL_I1715 NC_011312.1 1825069 1825416 D transposase 1825069..1825416 Aliivibrio salmonicida LFI1238 6987322 YP_002263134.1 CDS VSAL_I1718 NC_011312.1 1827460 1828080 R hypothetical protein complement(1827460..1828080) Aliivibrio salmonicida LFI1238 6987325 YP_002263135.1 CDS VSAL_I1720 NC_011312.1 1829028 1830104 D transposase 1829028..1830104 Aliivibrio salmonicida LFI1238 6987327 YP_002263136.1 CDS int NC_011312.1 1830387 1831628 R phage integrase complement(1830387..1831628) Aliivibrio salmonicida LFI1238 6987328 YP_002263137.1 CDS VSAL_I1723 NC_011312.1 1832987 1833943 R transposase complement(1832987..1833943) Aliivibrio salmonicida LFI1238 6987329 YP_002263138.1 CDS VSAL_I1724 NC_011312.1 1834851 1835756 R hypothetical protein complement(1834851..1835756) Aliivibrio salmonicida LFI1238 6987330 YP_002263139.1 CDS VSAL_I1725 NC_011312.1 1835774 1837129 D hypothetical protein 1835774..1837129 Aliivibrio salmonicida LFI1238 6987331 YP_002263140.1 CDS VSAL_I1726 NC_011312.1 1837282 1838166 R Similar to Escherichia coli Phosphoenolpyruvate synthase PpsA UniProt:P23538 (791 aa) fasta scores: E()=3.5e-21, 33.898% id in 236 aa; PEP-utilizing enzyme complement(1837282..1838166) Aliivibrio salmonicida LFI1238 6987332 YP_002263141.1 CDS aroH NC_011312.1 1838388 1839440 D tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1838388..1839440 Aliivibrio salmonicida LFI1238 6987333 YP_002263142.1 CDS VSAL_I1728 NC_011312.1 1839456 1839938 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 1839456..1839938 Aliivibrio salmonicida LFI1238 6988263 YP_002263143.1 CDS VSAL_I1729 NC_011312.1 1840008 1841789 R oligopeptidase F complement(1840008..1841789) Aliivibrio salmonicida LFI1238 6987334 YP_002263144.1 CDS VSAL_I1730 NC_011312.1 1841899 1842912 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(1841899..1842912) Aliivibrio salmonicida LFI1238 6987335 YP_002263145.1 CDS ihfA NC_011312.1 1843115 1843411 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(1843115..1843411) Aliivibrio salmonicida LFI1238 6987336 YP_002263146.1 CDS pheT NC_011312.1 1843935 1846322 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1843935..1846322) Aliivibrio salmonicida LFI1238 6988702 YP_002263147.1 CDS pheS NC_011312.1 1846340 1847323 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1846340..1847323) Aliivibrio salmonicida LFI1238 6988971 YP_002263148.1 CDS VSAL_I1736 NC_011312.1 1850439 1850861 D transposase 1850439..1850861 Aliivibrio salmonicida LFI1238 6987338 YP_002263149.1 CDS VSAL_I1737 NC_011312.1 1850879 1851445 D transposase 1850879..1851445 Aliivibrio salmonicida LFI1238 6987339 YP_002263150.1 CDS VSAL_I1739 NC_011312.1 1852072 1852803 R hypothetical protein complement(1852072..1852803) Aliivibrio salmonicida LFI1238 6987341 YP_002263151.1 CDS VSAL_I1740 NC_011312.1 1852833 1853519 R hypothetical protein complement(1852833..1853519) Aliivibrio salmonicida LFI1238 6987342 YP_002263152.1 CDS VSAL_I1741 NC_011312.1 1853551 1854279 R membrane protein complement(1853551..1854279) Aliivibrio salmonicida LFI1238 6987343 YP_002263153.1 CDS VSAL_I1743 NC_011312.1 1857562 1858416 R hypothetical protein complement(1857562..1858416) Aliivibrio salmonicida LFI1238 6987345 YP_002263154.1 CDS VSAL_I1745 NC_011312.1 1860051 1860365 D transposase 1860051..1860365 Aliivibrio salmonicida LFI1238 6987346 YP_002263155.1 CDS VSAL_I1746 NC_011312.1 1860362 1860709 D transposase 1860362..1860709 Aliivibrio salmonicida LFI1238 6987347 YP_002263156.1 CDS VSAL_I1747 NC_011312.1 1860781 1862268 D transposase 1860781..1862268 Aliivibrio salmonicida LFI1238 6987348 YP_002263157.1 CDS huvZ NC_011312.1 1863104 1863634 R heme uptake and utilization protein HuvZ complement(1863104..1863634) Aliivibrio salmonicida LFI1238 6987349 YP_002263158.1 CDS huvX NC_011312.1 1863660 1864166 R heme uptake and utilization protein HuvX complement(1863660..1864166) Aliivibrio salmonicida LFI1238 6988696 YP_002263159.1 CDS phuW NC_011312.1 1864187 1865509 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1864187..1865509) Aliivibrio salmonicida LFI1238 6988695 YP_002263160.1 CDS exbB1 NC_011312.1 1866457 1867137 D TonB system transport protein ExbB1 1866457..1867137 Aliivibrio salmonicida LFI1238 6989308 YP_002263161.1 CDS exbD1 NC_011312.1 1867137 1867562 D TonB system transport protein ExbD1 1867137..1867562 Aliivibrio salmonicida LFI1238 6988457 YP_002263162.1 CDS huvB NC_011312.1 1867552 1868424 D heme transporter protein HuvB, periplasmic binding protein 1867552..1868424 Aliivibrio salmonicida LFI1238 6988458 YP_002263163.1 CDS huvC NC_011312.1 1868428 1869465 D heme transporter protein HuvC, transmembrane permease component 1868428..1869465 Aliivibrio salmonicida LFI1238 6988693 YP_002263164.1 CDS hmuV NC_011312.1 1869462 1870244 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 1869462..1870244 Aliivibrio salmonicida LFI1238 6988694 YP_002263165.1 CDS rplT NC_011312.1 1870335 1870688 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1870335..1870688) Aliivibrio salmonicida LFI1238 6988692 YP_002263166.1 CDS rpmI NC_011312.1 1870730 1870924 R 50S ribosomal protein L35 complement(1870730..1870924) Aliivibrio salmonicida LFI1238 6989163 YP_002263167.1 CDS infC NC_011312.1 1871032 1871583 R CDS contanins a rare Isoleucine start codon (ATT); translation initiation factor IF-3 complement(1871032..1871583) Aliivibrio salmonicida LFI1238 6989178 YP_002263168.1 CDS thrS NC_011312.1 1871587 1873515 R catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase complement(1871587..1873515) Aliivibrio salmonicida LFI1238 6988717 YP_002263169.1 CDS VSAL_I1761 NC_011312.1 1873744 1874490 R Similar to Bacillus subtilis Spo0M UniProt:O87735 (258 aa) fasta scores: E()=5.5e-16, 38.117% id in 223 aa; sporulation-control protein complement(1873744..1874490) Aliivibrio salmonicida LFI1238 6989295 YP_002263170.1 CDS VSAL_I1762 NC_011312.1 1874557 1875639 R peptidase complement(1874557..1875639) Aliivibrio salmonicida LFI1238 6987350 YP_002263171.1 CDS VSAL_I1763 NC_011312.1 1875664 1875981 R hypothetical protein complement(1875664..1875981) Aliivibrio salmonicida LFI1238 6987351 YP_002263172.1 CDS VSAL_I1764 NC_011312.1 1876072 1877424 R Similar to Escherichia coli YegD UniProt:P36928 (450 aa) fasta scores: E()=9.3e-90, 55.679% id in 449 aa; chaperone complement(1876072..1877424) Aliivibrio salmonicida LFI1238 6987352 YP_002263173.1 CDS VSAL_I1765 NC_011312.1 1877488 1878051 R membrane-associated phosphoesterase complement(1877488..1878051) Aliivibrio salmonicida LFI1238 6987353 YP_002263174.1 CDS VSAL_I1766 NC_011312.1 1878265 1878972 D hypothetical protein 1878265..1878972 Aliivibrio salmonicida LFI1238 6987354 YP_002263175.1 CDS gyrA NC_011312.1 1879456 1882113 R DNA gyrase subunit A complement(1879456..1882113) Aliivibrio salmonicida LFI1238 6987355 YP_002263176.1 CDS ubiG NC_011312.1 1882401 1883126 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1882401..1883126 Aliivibrio salmonicida LFI1238 6988636 YP_002263177.1 CDS nrdA NC_011312.1 1883610 1885886 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1883610..1885886 Aliivibrio salmonicida LFI1238 6989353 YP_002263178.1 CDS nrdB NC_011312.1 1886055 1887188 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 1886055..1887188 Aliivibrio salmonicida LFI1238 6988913 YP_002263179.1 CDS VSAL_I1772 NC_011312.1 1889511 1889786 D ferredoxin 1889511..1889786 Aliivibrio salmonicida LFI1238 6987356 YP_002263180.1 CDS VSAL_I1773 NC_011312.1 1889844 1891076 R molybdopterin binding protein complement(1889844..1891076) Aliivibrio salmonicida LFI1238 6987357 YP_002263181.1 CDS tyrP NC_011312.1 1891303 1892475 D tyrosine-specific transporter 1891303..1892475 Aliivibrio salmonicida LFI1238 6987358 YP_002263182.1 CDS VSAL_I1775 NC_011312.1 1892637 1893551 D hypothetical protein 1892637..1893551 Aliivibrio salmonicida LFI1238 6989345 YP_002263183.1 CDS VSAL_I1776 NC_011312.1 1893600 1894925 R transposase complement(1893600..1894925) Aliivibrio salmonicida LFI1238 6987359 YP_002263184.1 CDS VSAL_I1777 NC_011312.1 1895311 1896192 R transposase complement(1895311..1896192) Aliivibrio salmonicida LFI1238 6987360 YP_002263185.1 CDS VSAL_I1779 NC_011312.1 1896603 1896950 D transposase 1896603..1896950 Aliivibrio salmonicida LFI1238 6987362 YP_002263186.1 CDS VSAL_I1780 NC_011312.1 1897021 1898508 D transposase 1897021..1898508 Aliivibrio salmonicida LFI1238 6987363 YP_002263187.1 CDS VSAL_I1781 NC_011312.1 1898601 1898987 R hypothetical protein complement(1898601..1898987) Aliivibrio salmonicida LFI1238 6987364 YP_002263188.1 CDS VSAL_I1782 NC_011312.1 1899190 1899843 R Metallo-beta-lactamase complement(1899190..1899843) Aliivibrio salmonicida LFI1238 6987365 YP_002263189.1 CDS VSAL_I1783 NC_011312.1 1899903 1901024 R lipoprotein complement(1899903..1901024) Aliivibrio salmonicida LFI1238 6987366 YP_002263190.1 CDS VSAL_I1784 NC_011312.1 1901005 1902024 R lipoprotein complement(1901005..1902024) Aliivibrio salmonicida LFI1238 6987367 YP_002263191.1 CDS VSAL_I1785 NC_011312.1 1902035 1903423 R hypothetical protein complement(1902035..1903423) Aliivibrio salmonicida LFI1238 6987368 YP_002263192.1 CDS VSAL_I1786 NC_011312.1 1903553 1904806 R Expression may be regulated by Fur; iron-regulated protein complement(1903553..1904806) Aliivibrio salmonicida LFI1238 6987369 YP_002263193.1 CDS ribA NC_011312.1 1905014 1905613 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(1905014..1905613) Aliivibrio salmonicida LFI1238 6987370 YP_002263194.1 CDS adhB NC_011312.1 1905921 1907066 R alcohol dehydrogenase 2 complement(1905921..1907066) Aliivibrio salmonicida LFI1238 6989095 YP_002263195.1 CDS VSAL_I1789 NC_011312.1 1907270 1907986 R hypothetical protein complement(1907270..1907986) Aliivibrio salmonicida LFI1238 6988222 YP_002263196.1 CDS VSAL_I1790 NC_011312.1 1907988 1911206 R Similar to Pasteurella haemolytica (mannheimia haemolytica) HsdR UniProt:P95512 (1055 aa) fasta scores: E()=2.8e-27, 27.793% id in 1083 aa; restriction enzyme complement(1907988..1911206) Aliivibrio salmonicida LFI1238 6987371 YP_002263197.1 CDS VSAL_I1792 NC_011312.1 1912607 1914370 R Similar to Salmonella enterica HsdM UniProt:P72418 (539 aa) fasta scores: E()=2.4e-42, 33.469% id in 493 aa; N-6 adenine-specific DNA methylase complement(1912607..1914370) Aliivibrio salmonicida LFI1238 6987373 YP_002263198.1 CDS VSAL_I1793 NC_011312.1 1914702 1915766 D hypothetical protein 1914702..1915766 Aliivibrio salmonicida LFI1238 6987374 YP_002263199.1 CDS VSAL_I1795 NC_011312.1 1916221 1916967 R hypothetical protein complement(1916221..1916967) Aliivibrio salmonicida LFI1238 6987376 YP_002263200.1 CDS VSAL_I1796 NC_011312.1 1917737 1919119 D sodium/alanine symporter 1917737..1919119 Aliivibrio salmonicida LFI1238 6988149 YP_002263201.1 CDS VSAL_I1797 NC_011312.1 1919516 1921201 D Similar to Escherichia coli small-conductance mechanosensitive channel MscS UniProt:P0C0S1 (286 aa) fasta scores: E()=1.6e-27, 34.643% id in 280 aa; mechanosensitive ion channel 1919516..1921201 Aliivibrio salmonicida LFI1238 6987378 YP_002263202.1 CDS VSAL_I1798 NC_011312.1 1921280 1921921 R amino acid transport protein, LysE type complement(1921280..1921921) Aliivibrio salmonicida LFI1238 6987379 YP_002263203.1 CDS VSAL_I1799 NC_011312.1 1922143 1922274 D hypothetical protein 1922143..1922274 Aliivibrio salmonicida LFI1238 6987380 YP_002263204.1 CDS VSAL_I1800 NC_011312.1 1922402 1923886 D Similar to Thermus aquaticus thermostable carboxypeptidase 1 UniProt:P42663 (511 aa) fasta scores: E()=2.4e-53, 36.853% id in 502 aa; carboxypeptidase 1922402..1923886 Aliivibrio salmonicida LFI1238 6987381 YP_002263205.1 CDS hipB NC_011312.1 1924100 1924351 D DNA-binding transcriptional regulator HipB 1924100..1924351 Aliivibrio salmonicida LFI1238 6987382 YP_002263206.1 CDS hipA NC_011312.1 1924351 1925673 D HipA family transcriptional regulator 1924351..1925673 Aliivibrio salmonicida LFI1238 6988659 YP_002263207.1 CDS VSAL_I1803 NC_011312.1 1925836 1927200 R hypothetical protein complement(1925836..1927200) Aliivibrio salmonicida LFI1238 6988658 YP_002263208.1 CDS VSAL_I1804 NC_011312.1 1927204 1928316 R hypothetical protein complement(1927204..1928316) Aliivibrio salmonicida LFI1238 6987383 YP_002263209.1 CDS VSAL_I1805 NC_011312.1 1928432 1928653 R hypothetical protein complement(1928432..1928653) Aliivibrio salmonicida LFI1238 6987384 YP_002263210.1 CDS VSAL_I1806 NC_011312.1 1928797 1930368 R hypothetical protein complement(1928797..1930368) Aliivibrio salmonicida LFI1238 6987385 YP_002263211.1 CDS VSAL_I1807 NC_011312.1 1930948 1931625 D hypothetical protein 1930948..1931625 Aliivibrio salmonicida LFI1238 6987386 YP_002263212.1 CDS VSAL_I1808 NC_011312.1 1931745 1932872 D hypothetical protein 1931745..1932872 Aliivibrio salmonicida LFI1238 6987387 YP_002263213.1 CDS VSAL_I1809 NC_011312.1 1932956 1933270 D transposase 1932956..1933270 Aliivibrio salmonicida LFI1238 6987388 YP_002263214.1 CDS VSAL_I1810 NC_011312.1 1933267 1933614 D transposase 1933267..1933614 Aliivibrio salmonicida LFI1238 6987389 YP_002263215.1 CDS VSAL_I1813 NC_011312.1 1935733 1937103 R Similar to Escherichia coli Hypothetical symporter YdjN UniProt:P77529 (463 aa) fasta scores: E()=2.2e-84,59.161% id in 453 aa; sodium/dicarboxylate symporter complement(1935733..1937103) Aliivibrio salmonicida LFI1238 6987392 YP_002263216.1 CDS VSAL_I1814 NC_011312.1 1937360 1938001 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1937360..1938001 Aliivibrio salmonicida LFI1238 6987393 YP_002263217.1 CDS VSAL_I1815 NC_011312.1 1938151 1938876 R Similar to Streptococcus pneumoniae CTP:phosphocholine Cytidylytransferase (PDB 1JYK),evalue=3e-18; nucleotidyl transferase complement(1938151..1938876) Aliivibrio salmonicida LFI1238 6987394 YP_002263218.1 CDS VSAL_I1816 NC_011312.1 1938973 1939746 R membrane protein complement(1938973..1939746) Aliivibrio salmonicida LFI1238 6987395 YP_002263219.1 CDS VSAL_I1817 NC_011312.1 1939747 1940967 R Similar to Salmonella typhimurium 2-aminoethylphosphonate-pyruvate aminotransferase (PDB 1M32), evalue=5e-33, identity=(110, 360); aminotransferase complement(1939747..1940967) Aliivibrio salmonicida LFI1238 6987396 YP_002263220.1 CDS VSAL_I1819 NC_011312.1 1943870 1944973 D Similar to Enterobacter sakazakii OmpA UniProt:Q52JK5 (347 aa) fasta scores: E()=3.7e-32, 32.286% id in 350 aa; outer membrane protein A 1943870..1944973 Aliivibrio salmonicida LFI1238 6987398 YP_002263221.1 CDS VSAL_I1820 NC_011312.1 1944970 1947069 D lipoprotein 1944970..1947069 Aliivibrio salmonicida LFI1238 6987399 YP_002263222.1 CDS VSAL_I1823 NC_011312.1 1949064 1949618 R Possible alternative translational start site after codon 8; exonuclease complement(1949064..1949618) Aliivibrio salmonicida LFI1238 6987402 YP_002263223.1 CDS VSAL_I1824 NC_011312.1 1949687 1951135 R membrane associated receptor complement(1949687..1951135) Aliivibrio salmonicida LFI1238 6987403 YP_002263224.1 CDS VSAL_I1825 NC_011312.1 1951455 1952087 D hypothetical protein 1951455..1952087 Aliivibrio salmonicida LFI1238 6987404 YP_002263225.1 CDS VSAL_I1826 NC_011312.1 1952087 1953907 D Similar to Escherichia coli Chaperone protein DnaK UniProt:P0A6Y8 (637 aa) fasta scores: E()=6.8e-06, 23.077% id in 429 aa; heat-shock chaperone protein 1952087..1953907 Aliivibrio salmonicida LFI1238 6987405 YP_002263226.1 CDS VSAL_I1827 NC_011312.1 1954046 1956862 D Similar to Methylovorus sp. Chaperone protein DnaK UniProt:Q9ZFC6 (641 aa) fasta scores: E()=1.7e-06, 25.056% id in 443 aa; chaperone heat-shock protein 1954046..1956862 Aliivibrio salmonicida LFI1238 6987406 YP_002263227.1 CDS VSAL_I1828 NC_011312.1 1956982 1957284 D hypothetical protein 1956982..1957284 Aliivibrio salmonicida LFI1238 6987407 YP_002263228.1 CDS VSAL_I1829 NC_011312.1 1957348 1957821 R hypothetical protein complement(1957348..1957821) Aliivibrio salmonicida LFI1238 6987408 YP_002263229.1 CDS VSAL_I1830 NC_011312.1 1958017 1959168 D hypothetical protein 1958017..1959168 Aliivibrio salmonicida LFI1238 6987409 YP_002263230.1 CDS udp NC_011312.1 1959321 1960079 R catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase complement(1959321..1960079) Aliivibrio salmonicida LFI1238 6987410 YP_002263231.1 CDS VSAL_I1834 NC_011312.1 1966663 1967010 R transposase complement(1966663..1967010) Aliivibrio salmonicida LFI1238 6987412 YP_002263232.1 CDS cydC NC_011312.1 1967437 1969158 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(1967437..1969158) Aliivibrio salmonicida LFI1238 6987414 YP_002263233.1 CDS cydD NC_011312.1 1969151 1970923 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(1969151..1970923) Aliivibrio salmonicida LFI1238 6988369 YP_002263234.1 CDS trxB NC_011312.1 1971073 1972038 R thioredoxin reductase complement(1971073..1972038) Aliivibrio salmonicida LFI1238 6988370 YP_002263235.1 CDS aladh NC_011312.1 1972198 1973316 R alanine dehydrogenase complement(1972198..1973316) Aliivibrio salmonicida LFI1238 6989340 YP_002263236.1 CDS lrp NC_011312.1 1973473 1973964 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1973473..1973964 Aliivibrio salmonicida LFI1238 6988229 YP_002263237.1 CDS VSAL_I1841 NC_011312.1 1974174 1977449 D DNA translocase FtsK 1974174..1977449 Aliivibrio salmonicida LFI1238 6988762 YP_002263238.1 CDS lolA NC_011312.1 1977479 1978075 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1977479..1978075 Aliivibrio salmonicida LFI1238 6987415 YP_002263239.1 CDS VSAL_I1843 NC_011312.1 1978120 1979466 D recombination factor protein RarA 1978120..1979466 Aliivibrio salmonicida LFI1238 6987416 YP_002263240.1 CDS serS NC_011312.1 1979589 1980896 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1979589..1980896 Aliivibrio salmonicida LFI1238 6987417 YP_002263241.1 CDS trxC NC_011312.1 1981008 1981442 R thioredoxin 2 complement(1981008..1981442) Aliivibrio salmonicida LFI1238 6989243 YP_002263242.1 CDS VSAL_I1846 NC_011312.1 1981576 1981899 R highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein complement(1981576..1981899) Aliivibrio salmonicida LFI1238 6989341 YP_002263243.1 CDS gsk NC_011312.1 1982083 1983387 D inosine-guanosine kinase 1982083..1983387 Aliivibrio salmonicida LFI1238 6987418 YP_002263244.1 CDS VSAL_I1848 NC_011312.1 1983456 1984331 R aldose 1-epimerase complement(1983456..1984331) Aliivibrio salmonicida LFI1238 6988632 YP_002263245.1 CDS gap NC_011312.1 1984513 1985505 R Expression may be regulated by Fur; glyceraldehydes-3-phosphate dehydrogenase complement(1984513..1985505) Aliivibrio salmonicida LFI1238 6987419 YP_002263246.1 CDS VSAL_I1850 NC_011312.1 1985842 1986246 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1985842..1986246 Aliivibrio salmonicida LFI1238 6988583 YP_002263247.1 CDS VSAL_I1851 NC_011312.1 1986310 1987194 R hypothetical protein complement(1986310..1987194) Aliivibrio salmonicida LFI1238 6987420 YP_002263248.1 CDS VSAL_I1852 NC_011312.1 1987276 1987560 D Expression may be stress-induced; hypothetical protein 1987276..1987560 Aliivibrio salmonicida LFI1238 6987421 YP_002263249.1 CDS VSAL_I1853 NC_011312.1 1987705 1987854 D hypothetical protein 1987705..1987854 Aliivibrio salmonicida LFI1238 6987422 YP_002263250.1 CDS VSAL_I1854 NC_011312.1 1987870 1988718 R ion transport protein complement(1987870..1988718) Aliivibrio salmonicida LFI1238 6987423 YP_002263251.1 CDS adhE NC_011312.1 1989295 1991946 D bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1989295..1991946 Aliivibrio salmonicida LFI1238 6987424 YP_002263252.1 CDS VSAL_I1856 NC_011312.1 1992080 1992751 R short chain dehydrogenase complement(1992080..1992751) Aliivibrio salmonicida LFI1238 6988224 YP_002263253.1 CDS VSAL_I1857 NC_011312.1 1993015 1993521 R hypothetical protein complement(1993015..1993521) Aliivibrio salmonicida LFI1238 6987425 YP_002263254.1 CDS sodB NC_011312.1 1993731 1994315 R superoxide dismutase complement(1993731..1994315) Aliivibrio salmonicida LFI1238 6987426 YP_002263255.1 CDS VSAL_I1859 NC_011312.1 1994551 1994886 D Similar to Escherichia coli YdhD UniProt:P0AC69 (115 aa) fasta scores: E()=1.3e-31, 72.321% id in 112 aa; glutaredoxin 1994551..1994886 Aliivibrio salmonicida LFI1238 6989252 YP_002263256.1 CDS VSAL_I1860 NC_011312.1 1994990 1996288 R Similar to Vibrio cholerae VieB UniProt:O68319 (553 aa) fasta scores: E()=5.3e-07, 23.249% id in 357 aa; response regulator complement(1994990..1996288) Aliivibrio salmonicida LFI1238 6987427 YP_002263257.1 CDS VSAL_I1861 NC_011312.1 1996459 1997787 R sodium/proton antiporter complement(1996459..1997787) Aliivibrio salmonicida LFI1238 6987428 YP_002263258.1 CDS rnt NC_011312.1 1997835 1998500 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1997835..1998500) Aliivibrio salmonicida LFI1238 6987429 YP_002263259.1 CDS motY NC_011312.1 1998701 1999579 D sodium-type flagellar protein MotY precursor 1998701..1999579 Aliivibrio salmonicida LFI1238 6989141 YP_002263260.1 CDS VSAL_I1864 NC_011312.1 1999618 2000052 R Expression may be regulated by Fur; outer membrane protein complement(1999618..2000052) Aliivibrio salmonicida LFI1238 6988824 YP_002263261.1 CDS gloA NC_011312.1 2000172 2000588 R lactoylglutathione lyase complement(2000172..2000588) Aliivibrio salmonicida LFI1238 6987430 YP_002263262.1 CDS nth NC_011312.1 2000625 2001260 R endonuclease III complement(2000625..2001260) Aliivibrio salmonicida LFI1238 6988599 YP_002263263.1 CDS rnfE NC_011312.1 2001278 2001964 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(2001278..2001964) Aliivibrio salmonicida LFI1238 6988920 YP_002263264.1 CDS rnfG NC_011312.1 2001964 2002596 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(2001964..2002596) Aliivibrio salmonicida LFI1238 6989135 YP_002263265.1 CDS rnfD NC_011312.1 2002600 2003655 R electron transport complex protein RnfD complement(2002600..2003655) Aliivibrio salmonicida LFI1238 6989136 YP_002263266.1 CDS rnfC NC_011312.1 2003658 2005808 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(2003658..2005808) Aliivibrio salmonicida LFI1238 6989134 YP_002263267.1 CDS rnfB NC_011312.1 2005812 2006396 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(2005812..2006396) Aliivibrio salmonicida LFI1238 6989133 YP_002263268.1 CDS rnfA NC_011312.1 2006399 2006980 R Na(+)-translocating NADH-quinone reductase subunit E complement(2006399..2006980) Aliivibrio salmonicida LFI1238 6989132 YP_002263269.1 CDS uvrB NC_011312.1 2007661 2009691 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2007661..2009691 Aliivibrio salmonicida LFI1238 6988150 YP_002263270.1 CDS luxO NC_011312.1 2010023 2011432 D two component signal response regulator LuxO 2010023..2011432 Aliivibrio salmonicida LFI1238 6989057 YP_002263271.1 CDS luxU NC_011312.1 2011444 2011776 D phosphorelay protein LuxU 2011444..2011776 Aliivibrio salmonicida LFI1238 6988764 YP_002263272.1 CDS VSAL_I1876 NC_011312.1 2011826 2012704 R hypothetical protein complement(2011826..2012704) Aliivibrio salmonicida LFI1238 6988768 YP_002263273.1 CDS moaA NC_011312.1 2013073 2014062 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 2013073..2014062 Aliivibrio salmonicida LFI1238 6987431 YP_002263274.1 CDS moaC NC_011312.1 2014075 2014554 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 2014075..2014554 Aliivibrio salmonicida LFI1238 6988813 YP_002263275.1 CDS moaD NC_011312.1 2014551 2014796 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 2014551..2014796 Aliivibrio salmonicida LFI1238 6988814 YP_002263276.1 CDS moaE NC_011312.1 2014798 2015244 D molybdopterin-converting factor subunit 2 2014798..2015244 Aliivibrio salmonicida LFI1238 6988815 YP_002263277.1 CDS VSAL_I1881 NC_011312.1 2015333 2016298 R hypothetical protein complement(2015333..2016298) Aliivibrio salmonicida LFI1238 6988816 YP_002263278.1 CDS VSAL_I1882 NC_011312.1 2016302 2017810 R membrane protein complement(2016302..2017810) Aliivibrio salmonicida LFI1238 6987432 YP_002263279.1 CDS VSAL_I1883 NC_011312.1 2017913 2018683 R Expression may be stress-induced; lipoprotein complement(2017913..2018683) Aliivibrio salmonicida LFI1238 6987433 YP_002263280.1 CDS VSAL_I1884 NC_011312.1 2018763 2019737 R methyltransferase complement(2018763..2019737) Aliivibrio salmonicida LFI1238 6987434 YP_002263281.1 CDS VSAL_I1885 NC_011312.1 2019787 2020515 R methyltransferase complement(2019787..2020515) Aliivibrio salmonicida LFI1238 6987435 YP_002263282.1 CDS aspS NC_011312.1 2021027 2022802 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2021027..2022802 Aliivibrio salmonicida LFI1238 6987436 YP_002263283.1 CDS ruvC NC_011312.1 2022901 2023422 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2022901..2023422 Aliivibrio salmonicida LFI1238 6988274 YP_002263284.1 CDS ruvA NC_011312.1 2023519 2024139 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2023519..2024139 Aliivibrio salmonicida LFI1238 6989218 YP_002263285.1 CDS ruvB NC_011312.1 2024185 2025198 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2024185..2025198 Aliivibrio salmonicida LFI1238 6989216 YP_002263286.1 CDS cydA NC_011312.1 2025572 2027161 D cytochrome D ubiquinol oxidase subunit I 2025572..2027161 Aliivibrio salmonicida LFI1238 6989217 YP_002263287.1 CDS cydB NC_011312.1 2027179 2028315 D cytochrome D ubiquinol oxidase subunit II 2027179..2028315 Aliivibrio salmonicida LFI1238 6988367 YP_002263288.1 CDS VSAL_I1892 NC_011312.1 2028327 2028434 D hypothetical protein 2028327..2028434 Aliivibrio salmonicida LFI1238 6988368 YP_002263289.1 CDS VSAL_I1893 NC_011312.1 2028427 2028729 D membrane protein 2028427..2028729 Aliivibrio salmonicida LFI1238 6987437 YP_002263290.1 CDS ybgC NC_011312.1 2028919 2029323 D acyl-CoA thioester hydrolase 2028919..2029323 Aliivibrio salmonicida LFI1238 6987438 YP_002263291.1 CDS tolQ NC_011312.1 2029313 2029999 D TolQ protein, inner membrane component 2029313..2029999 Aliivibrio salmonicida LFI1238 6989424 YP_002263292.1 CDS tolR NC_011312.1 2029999 2030445 D TolR protein, membrane component 2029999..2030445 Aliivibrio salmonicida LFI1238 6989306 YP_002263293.1 CDS tolA NC_011312.1 2030462 2031469 D TolA protein, membrane component 2030462..2031469 Aliivibrio salmonicida LFI1238 6989307 YP_002263294.1 CDS tolB NC_011312.1 2031480 2032832 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2031480..2032832 Aliivibrio salmonicida LFI1238 6989303 YP_002263295.1 CDS pal NC_011312.1 2032865 2033422 D peptidoglycan-associated lipoprotein 2032865..2033422 Aliivibrio salmonicida LFI1238 6989304 YP_002263296.1 CDS VSAL_I1900 NC_011312.1 2033447 2034211 D hypothetical protein 2033447..2034211 Aliivibrio salmonicida LFI1238 6988942 YP_002263297.1 CDS nadA NC_011312.1 2034338 2035387 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2034338..2035387 Aliivibrio salmonicida LFI1238 6987439 YP_002263298.1 CDS VSAL_I1902 NC_011312.1 2035463 2035921 R hypothetical protein complement(2035463..2035921) Aliivibrio salmonicida LFI1238 6988874 YP_002263299.1 CDS VSAL_I1903 NC_011312.1 2036033 2037040 R AraC family transcriptional regulator complement(2036033..2037040) Aliivibrio salmonicida LFI1238 6987440 YP_002263300.1 CDS VSAL_I1904 NC_011312.1 2037316 2038437 D secretion protein, HlyD family 2037316..2038437 Aliivibrio salmonicida LFI1238 6987441 YP_002263301.1 CDS VSAL_I1905 NC_011312.1 2038427 2039446 D membrane protein 2038427..2039446 Aliivibrio salmonicida LFI1238 6987442 YP_002263302.1 CDS VSAL_I1906 NC_011312.1 2039473 2040534 D membrane protein 2039473..2040534 Aliivibrio salmonicida LFI1238 6987443 YP_002263303.1 CDS VSAL_I1907 NC_011312.1 2040537 2041199 D ion channel 2040537..2041199 Aliivibrio salmonicida LFI1238 6987444 YP_002263304.1 CDS VSAL_I1908 NC_011312.1 2041652 2042254 R hypothetical protein complement(2041652..2042254) Aliivibrio salmonicida LFI1238 6987445 YP_002263305.1 CDS VSAL_I1909 NC_011312.1 2042634 2043029 D membrane protein 2042634..2043029 Aliivibrio salmonicida LFI1238 6987446 YP_002263306.1 CDS VSAL_I1911 NC_011312.1 2045374 2045796 D transposase 2045374..2045796 Aliivibrio salmonicida LFI1238 6988151 YP_002263307.1 CDS VSAL_I1912 NC_011312.1 2045814 2046380 D transposase 2045814..2046380 Aliivibrio salmonicida LFI1238 6987448 YP_002263308.1 CDS VSAL_I1913 NC_011312.1 2047052 2047447 D hypothetical protein 2047052..2047447 Aliivibrio salmonicida LFI1238 6987449 YP_002263309.1 CDS VSAL_I1914 NC_011312.1 2047714 2049075 D Similar to Escherichia coli GTP-binding protein HflX UniProt:P25519 (426 aa) fasta scores: E()=7e-30,33.484% id in 442 aa; GTP-binding protein 2047714..2049075 Aliivibrio salmonicida LFI1238 6987450 YP_002263310.1 CDS VSAL_I1915 NC_011312.1 2049181 2049606 D acetyltransferase 2049181..2049606 Aliivibrio salmonicida LFI1238 6987451 YP_002263311.1 CDS VSAL_I1916 NC_011312.1 2049660 2050640 R alcohol dehydrogenase complement(2049660..2050640) Aliivibrio salmonicida LFI1238 6987452 YP_002263312.1 CDS VSAL_I1917 NC_011312.1 2050803 2051120 R hypothetical protein complement(2050803..2051120) Aliivibrio salmonicida LFI1238 6987453 YP_002263313.1 CDS VSAL_I1918 NC_011312.1 2051215 2052375 R Similar to Escherichia coli MFS-type transporter protein ycaD UniProt:P21503 (382 aa) fasta scores: E()=2e-27, 32.275% id in 378 aa; MFS transporter complement(2051215..2052375) Aliivibrio salmonicida LFI1238 6987454 YP_002263314.1 CDS VSAL_I1919 NC_011312.1 2052717 2053427 D membrane protein 2052717..2053427 Aliivibrio salmonicida LFI1238 6987455 YP_002263315.1 CDS VSAL_I1920 NC_011312.1 2053473 2054327 R Expression may be regulated by Fur; hypothetical protein complement(2053473..2054327) Aliivibrio salmonicida LFI1238 6987456 YP_002263316.1 CDS VSAL_I1921 NC_011312.1 2055011 2055976 R Expression may be regulated by Fur; membrane protein, phage gene complement(2055011..2055976) Aliivibrio salmonicida LFI1238 6987457 YP_002263317.1 CDS VSAL_I1922 NC_011312.1 2056403 2058628 R phage protein complement(2056403..2058628) Aliivibrio salmonicida LFI1238 6987458 YP_002263318.1 CDS VSAL_I1924 NC_011312.1 2059548 2060168 R Expression may be regulated by Fur; phage protein complement(2059548..2060168) Aliivibrio salmonicida LFI1238 6987460 YP_002263319.1 CDS ibrB NC_011312.1 2060173 2060799 R Similar to Escherichia coli Immunoglobulin-binding regulator IbrB UniProt:Q8KU23 (214 aa) fasta scores: E()=4.1e-17, 33.649% id in 211 aa; immunoglobulin-binding regulator complement(2060173..2060799) Aliivibrio salmonicida LFI1238 6987461 YP_002263320.1 CDS VSAL_I1928 NC_011312.1 2063208 2063522 D transposase 2063208..2063522 Aliivibrio salmonicida LFI1238 6987462 YP_002263321.1 CDS VSAL_I1929 NC_011312.1 2063519 2063866 D transposase 2063519..2063866 Aliivibrio salmonicida LFI1238 6987463 YP_002263322.1 CDS VSAL_I1930 NC_011312.1 2063938 2065425 D transposase 2063938..2065425 Aliivibrio salmonicida LFI1238 6987464 YP_002263323.1 CDS moeB NC_011312.1 2065558 2066307 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(2065558..2066307) Aliivibrio salmonicida LFI1238 6987465 YP_002263324.1 CDS moeA NC_011312.1 2066319 2067563 R molybdopterin biosynthesis protein MoeA complement(2066319..2067563) Aliivibrio salmonicida LFI1238 6988820 YP_002263325.1 CDS folE NC_011312.1 2067717 2068370 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2067717..2068370 Aliivibrio salmonicida LFI1238 6988819 YP_002263326.1 CDS cls NC_011312.1 2068438 2069892 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase complement(2068438..2069892) Aliivibrio salmonicida LFI1238 6988556 YP_002263327.1 CDS VSAL_I1935 NC_011312.1 2070168 2071514 D sodium-dependent transporter 2070168..2071514 Aliivibrio salmonicida LFI1238 6988335 YP_002263328.1 CDS VSAL_I1936 NC_011312.1 2071607 2072005 R hypothetical protein complement(2071607..2072005) Aliivibrio salmonicida LFI1238 6987466 YP_002263329.1 CDS VSAL_I1937 NC_011312.1 2072018 2073220 R signaling protein complement(2072018..2073220) Aliivibrio salmonicida LFI1238 6987467 YP_002263330.1 CDS lpxH NC_011312.1 2073336 2074061 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(2073336..2074061) Aliivibrio salmonicida LFI1238 6987468 YP_002263331.1 CDS ppiB NC_011312.1 2074118 2074615 R peptidyl-prolyl cis-trans isomerase B complement(2074118..2074615) Aliivibrio salmonicida LFI1238 6988761 YP_002263332.1 CDS cysS NC_011312.1 2074764 2076152 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2074764..2076152 Aliivibrio salmonicida LFI1238 6989001 YP_002263333.1 CDS tdk NC_011312.1 2076233 2076811 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 2076233..2076811 Aliivibrio salmonicida LFI1238 6988382 YP_002263334.1 CDS VSAL_I1943 NC_011312.1 2077364 2077678 D transposase 2077364..2077678 Aliivibrio salmonicida LFI1238 6989277 YP_002263335.1 CDS VSAL_I1944 NC_011312.1 2077675 2078022 D transposase 2077675..2078022 Aliivibrio salmonicida LFI1238 6987469 YP_002263336.1 CDS oppA NC_011312.1 2082386 2084050 D oligopeptide transport system permease protein B 2082386..2084050 Aliivibrio salmonicida LFI1238 6987471 YP_002263337.1 CDS oppC NC_011312.1 2085095 2085997 D oligopeptide transport system permease protein C 2085095..2085997 Aliivibrio salmonicida LFI1238 6988934 YP_002263338.1 CDS oppD NC_011312.1 2086048 2087013 D oligopeptide transporter ATP-binding protein 2086048..2087013 Aliivibrio salmonicida LFI1238 6988935 YP_002263339.1 CDS oppF NC_011312.1 2087013 2088005 D oligopeptide transport ATP-binding protein F 2087013..2088005 Aliivibrio salmonicida LFI1238 6988936 YP_002263340.1 CDS VSAL_I1951 NC_011312.1 2088186 2090348 D Possible alternative translational start site after codon 9; methyl-accepting chemotaxis protein 2088186..2090348 Aliivibrio salmonicida LFI1238 6988937 YP_002263341.1 CDS VSAL_I1952 NC_011312.1 2090451 2091623 R hypothetical protein complement(2090451..2091623) Aliivibrio salmonicida LFI1238 6987472 YP_002263342.1 CDS pflA NC_011312.1 2091688 2092425 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(2091688..2092425) Aliivibrio salmonicida LFI1238 6987473 YP_002263343.1 CDS VSAL_I1954 NC_011312.1 2092573 2093898 R transposase complement(2092573..2093898) Aliivibrio salmonicida LFI1238 6988962 YP_002263344.1 CDS pflB NC_011312.1 2094014 2096290 R formate acetyltransferase 1 complement(2094014..2096290) Aliivibrio salmonicida LFI1238 6987474 YP_002263345.1 CDS VSAL_I1956 NC_011312.1 2096688 2097548 R Similar to Escherichia coli formate transporter 1 FocA UniProt:P0AC23 (285 aa) fasta scores: E()=2.7e-69, 63.380% id in 284 aa; formate transporter 1 complement(2096688..2097548) Aliivibrio salmonicida LFI1238 6988963 YP_002263346.1 CDS aotP NC_011312.1 2098078 2098848 D arginine/ornithine periplasmic binding protein-dependent transporter ATP-binding protein 2098078..2098848 Aliivibrio salmonicida LFI1238 6987475 YP_002263347.1 CDS aotJ NC_011312.1 2098933 2099709 D arginine/ornithine periplasmic binding protein-dependent transporter 2098933..2099709 Aliivibrio salmonicida LFI1238 6988239 YP_002263348.1 CDS aotQ NC_011312.1 2099799 2100539 D arginine/ornithine periplasmic binding protein-dependent transporter inner membrane component 2099799..2100539 Aliivibrio salmonicida LFI1238 6988237 YP_002263349.1 CDS aotM NC_011312.1 2100542 2101219 D arginine/ornithine periplasmic binding protein-dependent transporter inner membrane component 2100542..2101219 Aliivibrio salmonicida LFI1238 6988240 YP_002263350.1 CDS grxB NC_011312.1 2101503 2102153 R cofactor involved in the reduction of disulfides; glutaredoxin complement(2101503..2102153) Aliivibrio salmonicida LFI1238 6988238 YP_002263351.1 CDS xthA NC_011312.1 2102307 2103113 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(2102307..2103113) Aliivibrio salmonicida LFI1238 6988629 YP_002263352.1 CDS VSAL_I1963 NC_011312.1 2104217 2105389 D secretion protein, HlyD family 2104217..2105389 Aliivibrio salmonicida LFI1238 6988154 YP_002263353.1 CDS VSAL_I1965 NC_011312.1 2108585 2109268 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC complement(2108585..2109268) Aliivibrio salmonicida LFI1238 6987477 YP_002263354.1 CDS VSAL_I1966 NC_011312.1 2109374 2110438 R pyridoxal-phosphate dependent protein complement(2109374..2110438) Aliivibrio salmonicida LFI1238 6987478 YP_002263355.1 CDS VSAL_I1967 NC_011312.1 2110558 2111025 D Similar to Zymomonas mobilis Glutamate uptake regulatory protein UniProt:P74996 (164 aa) fasta scores: E()=3.8e-21, 44.371% id in 151 aa; AsnC family transcriptional regulator 2110558..2111025 Aliivibrio salmonicida LFI1238 6987479 YP_002263356.1 CDS tesB NC_011312.1 2111094 2111957 R acyl-CoA thioesterase II complement(2111094..2111957) Aliivibrio salmonicida LFI1238 6987480 YP_002263357.1 CDS VSAL_I1969 NC_011312.1 2112219 2112707 D lipoprotein 2112219..2112707 Aliivibrio salmonicida LFI1238 6989278 YP_002263358.1 CDS VSAL_I1970 NC_011312.1 2112749 2113051 R methylated-DNA methyltransferase complement(2112749..2113051) Aliivibrio salmonicida LFI1238 6987481 YP_002263359.1 CDS VSAL_I1971 NC_011312.1 2113168 2113908 D membrane protein 2113168..2113908 Aliivibrio salmonicida LFI1238 6987482 YP_002263360.1 CDS VSAL_I1972 NC_011312.1 2113990 2114901 R Similar to Escherichia coli Iron transport protein, periplasmic binding protein SitA UniProt:Q2L3R1 (304 aa) fasta scores: E()=1.8e-29, 32.993% id in 294 aa; periplasmic solute binding protein complement(2113990..2114901) Aliivibrio salmonicida LFI1238 6987483 YP_002263361.1 CDS VSAL_I1973 NC_011312.1 2114894 2115775 R Similar to Yersinia pestis Chelated iron transport system membrane protein yfeD UniProt:Q56955 (297 aa) fasta scores: E()=1.2e-19, 28.625% id in 269 aa; ABC transporter complement(2114894..2115775) Aliivibrio salmonicida LFI1238 6987484 YP_002263362.1 CDS VSAL_I1974 NC_011312.1 2115775 2116482 R Similar to Escherichia coli Iron(III) dicitrate transport ATP-binding protein fecE UniProt:P15031 (255 aa) blastp scores: E()=3e-30; ABC transporter ATP-binding protein complement(2115775..2116482) Aliivibrio salmonicida LFI1238 6987485 YP_002263363.1 CDS VSAL_I1975 NC_011312.1 2116807 2117469 D lipoprotein 2116807..2117469 Aliivibrio salmonicida LFI1238 6987486 YP_002263364.1 CDS VSAL_I1976 NC_011312.1 2117471 2118430 D nickel transporter 2117471..2118430 Aliivibrio salmonicida LFI1238 6987487 YP_002263365.1 CDS VSAL_I1977 NC_011312.1 2118542 2120293 R membrane associated GGDEF protein complement(2118542..2120293) Aliivibrio salmonicida LFI1238 6987488 YP_002263366.1 CDS VSAL_I1978 NC_011312.1 2120425 2121759 R signal transduction protein, histidine kinase complement(2120425..2121759) Aliivibrio salmonicida LFI1238 6987489 YP_002263367.1 CDS VSAL_I1979 NC_011312.1 2121749 2122408 R transcriptional regulator complement(2121749..2122408) Aliivibrio salmonicida LFI1238 6987490 YP_002263368.1 CDS VSAL_I1980 NC_011312.1 2122413 2122799 R hypothetical protein complement(2122413..2122799) Aliivibrio salmonicida LFI1238 6987491 YP_002263369.1 CDS VSAL_I1981 NC_011312.1 2122929 2123606 R membrane protein complement(2122929..2123606) Aliivibrio salmonicida LFI1238 6987492 YP_002263370.1 CDS tfoX NC_011312.1 2123700 2124287 R Similar to Haemophilus influenzae DNA transformation protein TfoX UniProt:P43779 fasta scores: E()=2e-07, 28.718% id in 195 aa; DNA transformation protein TfoX complement(2123700..2124287) Aliivibrio salmonicida LFI1238 6987493 YP_002263371.1 CDS purR NC_011312.1 2124662 2125663 R HTH-type transcriptional repressor PurR (purine nucleotide synthesis repressor) complement(2124662..2125663) Aliivibrio salmonicida LFI1238 6989279 YP_002263372.1 CDS torD NC_011312.1 2125988 2126635 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD complement(2125988..2126635) Aliivibrio salmonicida LFI1238 6989044 YP_002263373.1 CDS torR NC_011312.1 2126867 2127565 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 2126867..2127565 Aliivibrio salmonicida LFI1238 6989311 YP_002263374.1 CDS VSAL_I1986 NC_011312.1 2127761 2129173 D lipoprotein 2127761..2129173 Aliivibrio salmonicida LFI1238 6989312 YP_002263375.1 CDS rluF NC_011312.1 2129295 2130239 D ribosomal large subunit pseudouridine synthase F 2129295..2130239 Aliivibrio salmonicida LFI1238 6987494 YP_002263376.1 CDS VSAL_I1988 NC_011312.1 2130818 2131369 D hypothetical protein 2130818..2131369 Aliivibrio salmonicida LFI1238 6988156 YP_002263377.1 CDS VSAL_I1989 NC_011312.1 2131373 2133082 D ABC transporter ATP-binding protein 2131373..2133082 Aliivibrio salmonicida LFI1238 6987495 YP_002263378.1 CDS VSAL_I1990 NC_011312.1 2133072 2133911 D cobalt transport protein 2133072..2133911 Aliivibrio salmonicida LFI1238 6987496 YP_002263379.1 CDS VSAL_I1991 NC_011312.1 2133986 2134339 R hypothetical protein complement(2133986..2134339) Aliivibrio salmonicida LFI1238 6987497 YP_002263380.1 CDS VSAL_I1993 NC_011312.1 2135106 2135987 D transposase 2135106..2135987 Aliivibrio salmonicida LFI1238 6987499 YP_002263381.1 CDS VSAL_I1995 NC_011312.1 2136897 2137670 D Similar to Proteus vulgaris Phospholipase A1 precursor PldA UniProt:P37447 (289 aa) fasta scores: E()=2.6e-30, 39.574% id in 235 aa; phospholipase A1 precursor 2136897..2137670 Aliivibrio salmonicida LFI1238 6987501 YP_002263382.1 CDS VSAL_I1996 NC_011312.1 2137808 2138452 D Similar to Escherichia coli Formate-dependent nitrite reductase complex NrfG subunit UniProt:P32712 (198 aa) fasta scores: E()=4.5e-12, 32.812% id in 192 aa; formate-dependent nitrite reductase complex NrfG subunit 2137808..2138452 Aliivibrio salmonicida LFI1238 6987502 YP_002263383.1 CDS nrfA NC_011312.1 2138553 2139989 R catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 complement(2138553..2139989) Aliivibrio salmonicida LFI1238 6987503 YP_002263384.1 CDS nrfB NC_011312.1 2140482 2141075 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 2140482..2141075 Aliivibrio salmonicida LFI1238 6988915 YP_002263385.1 CDS nrfC NC_011312.1 2141077 2141763 D cytochrome C biogenesis protein NrfC 2141077..2141763 Aliivibrio salmonicida LFI1238 6988916 YP_002263386.1 CDS nrfD NC_011312.1 2141765 2142721 D cytochrome C biogenesis protein NrfD 2141765..2142721 Aliivibrio salmonicida LFI1238 6988917 YP_002263387.1 CDS ccmF NC_011312.1 2142795 2144681 D cytochrome C biogenesis protein CcmF 2142795..2144681 Aliivibrio salmonicida LFI1238 6988918 YP_002263388.1 CDS VSAL_I2002 NC_011312.1 2144678 2145205 D Similar to Escherichia coli Thiol:disulfide interchange protein dsbE UniProt:P0AA86 (185 aa) fasta scores: E()=1.3e-20, 37.805% id in 164 aa; thiol/disulfide interchange protein 2144678..2145205 Aliivibrio salmonicida LFI1238 6988310 YP_002263389.1 CDS VSAL_I2003 NC_011312.1 2145205 2145660 D Similar to Escherichia coli Formate-dependent nitrite reductase complex nrfF subunit precursor UniProt:P32711 (127 aa) fasta scores: E()=1.4e-16, 50.505% id in 99 aa; cytochrome c biogenesis protein 2145205..2145660 Aliivibrio salmonicida LFI1238 6987504 YP_002263390.1 CDS VSAL_I2004 NC_011312.1 2145663 2146376 R aspartate racemase complement(2145663..2146376) Aliivibrio salmonicida LFI1238 6987505 YP_002263391.1 CDS dcuA NC_011312.1 2146411 2147712 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(2146411..2147712) Aliivibrio salmonicida LFI1238 6987506 YP_002263392.1 CDS VSAL_I2006 NC_011312.1 2148040 2148921 D Expression may be regulated by Fur; LysR family transcriptional regulator 2148040..2148921 Aliivibrio salmonicida LFI1238 6988393 YP_002263393.1 CDS VSAL_I2007 NC_011312.1 2148918 2149679 R Similar to Escherichia coli Phosphatidylglycerophosphatase B PgpB UniProt:P0A924 (254 aa) fasta scores: E()=1e-09, 30.270% id in 185 aa; phosphatidylglycerophosphatase B complement(2148918..2149679) Aliivibrio salmonicida LFI1238 6987507 YP_002263394.1 CDS VSAL_I2010 NC_011312.1 2152275 2152622 R transposase complement(2152275..2152622) Aliivibrio salmonicida LFI1238 6987510 YP_002263395.1 CDS VSAL_I2011 NC_011312.1 2152619 2152933 R transposase complement(2152619..2152933) Aliivibrio salmonicida LFI1238 6987511 YP_002263396.1 CDS VSAL_I2015 NC_011312.1 2157061 2157942 D transposase 2157061..2157942 Aliivibrio salmonicida LFI1238 6987515 YP_002263397.1 CDS VSAL_I2017 NC_011312.1 2158722 2160326 D MFS transporter 2158722..2160326 Aliivibrio salmonicida LFI1238 6987517 YP_002263398.1 CDS rsuA NC_011312.1 2160396 2161100 D ribosomal small subunit pseudouridine synthase A (16S pseudouridine 516 synthase) 2160396..2161100 Aliivibrio salmonicida LFI1238 6987518 YP_002263399.1 CDS bcr NC_011312.1 2161267 2162472 D Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein 2161267..2162472 Aliivibrio salmonicida LFI1238 6989214 YP_002263400.1 CDS VSAL_I2020 NC_011312.1 2162473 2163162 D hypothetical protein 2162473..2163162 Aliivibrio salmonicida LFI1238 6988288 YP_002263401.1 CDS vcmH NC_011312.1 2164796 2166175 D Expression may be regulated by Fur; multidrug efflux pump 2164796..2166175 Aliivibrio salmonicida LFI1238 6987520 YP_002263402.1 CDS VSAL_I2023 NC_011312.1 2166290 2166961 D Similar to Agrobacterium tumefaciens AttE UniProt:O32734 (264 aa) fasta scores: E()=2.7e-30, 48.387% id in 217 aa. May be required for virulence and attachment to host cells; ABC transporter ATP-binding protein 2166290..2166961 Aliivibrio salmonicida LFI1238 6989405 YP_002263403.1 CDS VSAL_I2024 NC_011312.1 2166942 2169395 D Similar to C-terminal part of Agrobacterium tumefaciens AttG UniProt:Q79C15 (415 aa) fasta scores: E()=1.3e-25, 27.654% id in 405 aa. May be required for virulence and attachment to host cells; permease 2166942..2169395 Aliivibrio salmonicida LFI1238 6987521 YP_002263404.1 CDS VSAL_I2025 NC_011312.1 2169395 2170516 D Similar to Agrobacterium tumefaciens AttH UniProt:O32737 (355 aa) fasta scores: E()=9.9e-42, 33.841% id in 328 aa. May be required for virulence and attachment to host cells; membrane protein 2169395..2170516 Aliivibrio salmonicida LFI1238 6987522 YP_002263405.1 CDS nhaA NC_011312.1 2170673 2171821 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 2170673..2171821 Aliivibrio salmonicida LFI1238 6987523 YP_002263406.1 CDS VSAL_I2027 NC_011312.1 2171879 2173204 R transposase complement(2171879..2173204) Aliivibrio salmonicida LFI1238 6988895 YP_002263407.1 CDS VSAL_I2028 NC_011312.1 2173803 2175005 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2173803..2175005 Aliivibrio salmonicida LFI1238 6987524 YP_002263408.1 CDS VSAL_I2029 NC_011312.1 2175149 2176831 R hypothetical protein complement(2175149..2176831) Aliivibrio salmonicida LFI1238 6987525 YP_002263409.1 CDS grxA NC_011312.1 2176977 2177240 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(2176977..2177240) Aliivibrio salmonicida LFI1238 6987526 YP_002263410.1 CDS hexR NC_011312.1 2177492 2178346 R Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR complement(2177492..2178346) Aliivibrio salmonicida LFI1238 6988628 YP_002263411.1 CDS VSAL_I2032 NC_011312.1 2178698 2180341 R Similar to Haemophilus influenzae L-2,4-diaminobutyrate decarboxylase ddc UniProt:P71362 (511 aa) fasta scores: E()=5e-24, 26.609% id in 466 aa; pyridoxal-dependent decarboxylase complement(2178698..2180341) Aliivibrio salmonicida LFI1238 6988652 YP_002263412.1 CDS VSAL_I2033 NC_011312.1 2180520 2181032 R hypothetical protein complement(2180520..2181032) Aliivibrio salmonicida LFI1238 6987527 YP_002263413.1 CDS VSAL_I2034 NC_011312.1 2181204 2182037 R Lack of similarity at the C-terminus in comparison to other proteins; membrane protein complement(2181204..2182037) Aliivibrio salmonicida LFI1238 6987528 YP_002263414.1 CDS VSAL_I2035 NC_011312.1 2182127 2183053 R hypothetical protein complement(2182127..2183053) Aliivibrio salmonicida LFI1238 6987529 YP_002263415.1 CDS VSAL_I2037 NC_011312.1 2183809 2184375 R transposase complement(2183809..2184375) Aliivibrio salmonicida LFI1238 6987531 YP_002263416.1 CDS VSAL_I2038 NC_011312.1 2184393 2184815 R transposase complement(2184393..2184815) Aliivibrio salmonicida LFI1238 6987532 YP_002263417.1 CDS VSAL_I2039 NC_011312.1 2185049 2185600 R hypothetical protein complement(2185049..2185600) Aliivibrio salmonicida LFI1238 6987533 YP_002263418.1 CDS VSAL_I2040 NC_011312.1 2185906 2187207 D lipoprotein 2185906..2187207 Aliivibrio salmonicida LFI1238 6987534 YP_002263419.1 CDS serC NC_011312.1 2187397 2188479 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2187397..2188479 Aliivibrio salmonicida LFI1238 6987535 YP_002263420.1 CDS VSAL_I2042 NC_011312.1 2188557 2190044 R transposase complement(2188557..2190044) Aliivibrio salmonicida LFI1238 6989241 YP_002263421.1 CDS VSAL_I2043 NC_011312.1 2190116 2190463 R transposase complement(2190116..2190463) Aliivibrio salmonicida LFI1238 6987536 YP_002263422.1 CDS VSAL_I2044 NC_011312.1 2190460 2190774 R transposase complement(2190460..2190774) Aliivibrio salmonicida LFI1238 6987537 YP_002263423.1 CDS VSAL_I2046 NC_011312.1 2191622 2192140 D acetyltransferase (GNAT) family protein 2191622..2192140 Aliivibrio salmonicida LFI1238 6987539 YP_002263424.1 CDS VSAL_I2047 NC_011312.1 2192149 2193606 D membrane protein 2192149..2193606 Aliivibrio salmonicida LFI1238 6987540 YP_002263425.1 CDS VSAL_I2048 NC_011312.1 2193662 2194351 R multiprotein complex assembly protein complement(2193662..2194351) Aliivibrio salmonicida LFI1238 6987541 YP_002263426.1 CDS VSAL_I2049 NC_011312.1 2194501 2195376 R mechanosensitive ion channel complement(2194501..2195376) Aliivibrio salmonicida LFI1238 6987542 YP_002263427.1 CDS VSAL_I2050 NC_011312.1 2195378 2197738 R membrane protein complement(2195378..2197738) Aliivibrio salmonicida LFI1238 6987543 YP_002263428.1 CDS VSAL_I2051 NC_011312.1 2197997 2198878 R transposase complement(2197997..2198878) Aliivibrio salmonicida LFI1238 6987544 YP_002263429.1 CDS VSAL_I2053 NC_011312.1 2200109 2200771 R Similar to Escherichia coli Inner membrane protein yccA UniProt:P0AAC6 (219 aa) fasta scores: E()=1.5e-36, 61.009% id in 218 aa; hypothetical protein complement(2200109..2200771) Aliivibrio salmonicida LFI1238 6987546 YP_002263430.1 CDS aapP NC_011312.1 2201012 2201761 R general L-amino acid transport ATP-binding subunit complement(2201012..2201761) Aliivibrio salmonicida LFI1238 6987547 YP_002263431.1 CDS aapM NC_011312.1 2201786 2202883 R general L-amino acid ABC transporter permease protein complement(2201786..2202883) Aliivibrio salmonicida LFI1238 6988206 YP_002263432.1 CDS aapQ NC_011312.1 2202886 2204007 R general L-amino acid ABC transporter permease protein complement(2202886..2204007) Aliivibrio salmonicida LFI1238 6988205 YP_002263433.1 CDS aapJ NC_011312.1 2204096 2205124 R general L-amino acid-binding periplasmic protein precursor complement(2204096..2205124) Aliivibrio salmonicida LFI1238 6988207 YP_002263434.1 CDS VSAL_I2058 NC_011312.1 2205516 2206457 D virulence protein VirC 2205516..2206457 Aliivibrio salmonicida LFI1238 6988204 YP_002263435.1 CDS VSAL_I2059 NC_011312.1 2206485 2207171 D transcription regulator, GntR family 2206485..2207171 Aliivibrio salmonicida LFI1238 6987548 YP_002263436.1 CDS VSAL_I2060 NC_011312.1 2207303 2207992 R hypothetical protein complement(2207303..2207992) Aliivibrio salmonicida LFI1238 6987549 YP_002263437.1 CDS VSAL_I2061 NC_011312.1 2208223 2208918 R hypothetical protein complement(2208223..2208918) Aliivibrio salmonicida LFI1238 6987550 YP_002263438.1 CDS VSAL_I2062 NC_011312.1 2209199 2212231 D FAD linked oxidase 2209199..2212231 Aliivibrio salmonicida LFI1238 6987551 YP_002263439.1 CDS VSAL_I2063 NC_011312.1 2212400 2213992 D hypothetical protein 2212400..2213992 Aliivibrio salmonicida LFI1238 6987552 YP_002263440.1 CDS VSAL_I2064 NC_011312.1 2214121 2214540 D hypothetical protein 2214121..2214540 Aliivibrio salmonicida LFI1238 6987553 YP_002263441.1 CDS VSAL_I2065 NC_011312.1 2214988 2215143 D hypothetical protein 2214988..2215143 Aliivibrio salmonicida LFI1238 6987554 YP_002263442.1 CDS VSAL_I2066 NC_011312.1 2215436 2216650 D Similar to Bacillus halodurans Reverse transcriptase-maturase-endonuclease UniProt:Q9JWR9 (418 aa) fasta scores: E()=1.9e-39, 34.314% id in 408 aa; group II intron reverse transcriptase/maturase 2215436..2216650 Aliivibrio salmonicida LFI1238 6987555 YP_002263443.1 CDS zntA NC_011312.1 2216849 2219170 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 2216849..2219170 Aliivibrio salmonicida LFI1238 6988157 YP_002263444.1 CDS VSAL_I2068 NC_011312.1 2219231 2221753 R membrane protein complement(2219231..2221753) Aliivibrio salmonicida LFI1238 6989440 YP_002263445.1 CDS VSAL_I2070 NC_011312.1 2222500 2223381 R transposase complement(2222500..2223381) Aliivibrio salmonicida LFI1238 6987558 YP_002263446.1 CDS VSAL_I2071 NC_011312.1 2223705 2224043 D hypothetical protein 2223705..2224043 Aliivibrio salmonicida LFI1238 6987559 YP_002263447.1 CDS VSAL_I2072 NC_011312.1 2224188 2224493 R hypothetical protein complement(2224188..2224493) Aliivibrio salmonicida LFI1238 6987560 YP_002263448.1 CDS VSAL_I2073 NC_011312.1 2224789 2225283 R hypothetical protein complement(2224789..2225283) Aliivibrio salmonicida LFI1238 6987561 YP_002263449.1 CDS VSAL_I2074 NC_011312.1 2225514 2226170 D Similar to Escherichia coli Chloramphenicol acetyltransferase 3 UniProt:P00484 (213 aa) fasta scores: E()=6.6e-13, 26.415% id in 212 aa; chloramphenicol acetyltransferase 2225514..2226170 Aliivibrio salmonicida LFI1238 6987562 YP_002263450.1 CDS VSAL_I2075 NC_011312.1 2226488 2227576 D methyl-accepting chemotaxis protein 2226488..2227576 Aliivibrio salmonicida LFI1238 6987563 YP_002263451.1 CDS VSAL_I2076 NC_011312.1 2227871 2228557 R hypothetical protein complement(2227871..2228557) Aliivibrio salmonicida LFI1238 6987564 YP_002263452.1 CDS VSAL_I2077a NC_011312.1 2228617 2228859 R hypothetical protein complement(2228617..2228859) Aliivibrio salmonicida LFI1238 6987565 YP_002263453.1 CDS serC NC_011312.1 2228872 2229957 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2228872..2229957) Aliivibrio salmonicida LFI1238 6987566 YP_002263454.1 CDS VSAL_I2079 NC_011312.1 2229962 2230702 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(2229962..2230702) Aliivibrio salmonicida LFI1238 6987567 YP_002263455.1 CDS VSAL_I2080 NC_011312.1 2230843 2231649 D AraC family transcriptional regulator 2230843..2231649 Aliivibrio salmonicida LFI1238 6987568 YP_002263456.1 CDS VSAL_I2081 NC_011312.1 2231708 2233240 R Similar to Neisseria gonorrhoeae Phospholipase D (Fragment) UniProt:Q6W764 (525 aa) fasta scores: E()=1.9e-53, 36.031% id in 519 aa; phospholipase D complement(2231708..2233240) Aliivibrio salmonicida LFI1238 6987569 YP_002263457.1 CDS VSAL_I2082 NC_011312.1 2233560 2235284 D helicase (DEAD/DEAH box helicase) 2233560..2235284 Aliivibrio salmonicida LFI1238 6987570 YP_002263458.1 CDS VSAL_I2083 NC_011312.1 2235303 2235740 R hypothetical protein complement(2235303..2235740) Aliivibrio salmonicida LFI1238 6987571 YP_002263459.1 CDS rplY NC_011312.1 2235954 2236232 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2235954..2236232 Aliivibrio salmonicida LFI1238 6987572 YP_002263460.1 CDS VSAL_I2085 NC_011312.1 2236539 2236982 D heat shock protein 2236539..2236982 Aliivibrio salmonicida LFI1238 6989168 YP_002263461.1 CDS VSAL_I2087 NC_011312.1 2238694 2239041 R transposase complement(2238694..2239041) Aliivibrio salmonicida LFI1238 6987574 YP_002263462.1 CDS VSAL_I2088 NC_011312.1 2239038 2239352 R transposase complement(2239038..2239352) Aliivibrio salmonicida LFI1238 6987575 YP_002263463.1 CDS fabG NC_011312.1 2240661 2241386 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2240661..2241386) Aliivibrio salmonicida LFI1238 6988466 YP_002263464.1 CDS VSAL_I2091 NC_011312.1 2241398 2241859 R beta-hydroxydecanoyl-ACP dehydrase complement(2241398..2241859) Aliivibrio salmonicida LFI1238 6988468 YP_002263465.1 CDS VSAL_I2092 NC_011312.1 2241856 2243061 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(2241856..2243061) Aliivibrio salmonicida LFI1238 6987577 YP_002263466.1 CDS VSAL_I2093 NC_011312.1 2243054 2243683 R lipoprotein complement(2243054..2243683) Aliivibrio salmonicida LFI1238 6987578 YP_002263467.1 CDS VSAL_I2094 NC_011312.1 2243694 2246030 R membrane protein complement(2243694..2246030) Aliivibrio salmonicida LFI1238 6987579 YP_002263468.1 CDS VSAL_I2095 NC_011312.1 2246035 2246655 R outer membrane protein complement(2246035..2246655) Aliivibrio salmonicida LFI1238 6987580 YP_002263469.1 CDS VSAL_I2096 NC_011312.1 2246648 2247106 R Similar to Pseudomonas sp. 4-hydroxybenzoyl CoA thioesterase (PDB 1LO8), evalue=2e-05 identity=(29, 104); thioesterase complement(2246648..2247106) Aliivibrio salmonicida LFI1238 6987581 YP_002263470.1 CDS VSAL_I2097 NC_011312.1 2247106 2248641 R Similar to Homo sapiens Histidine ammonia-lyase UniProt:P42357 (657 aa) fasta scores: E()=2.2e-52, 33.594% id in 512 aa; phenylalanine and histidine ammonia-lyase complement(2247106..2248641) Aliivibrio salmonicida LFI1238 6987582 YP_002263471.1 CDS VSAL_I2098 NC_011312.1 2248631 2250322 R glycosyl transferase family protein complement(2248631..2250322) Aliivibrio salmonicida LFI1238 6987583 YP_002263472.1 CDS VSAL_I2099 NC_011312.1 2250325 2250699 R hypothetical protein complement(2250325..2250699) Aliivibrio salmonicida LFI1238 6987584 YP_002263473.1 CDS VSAL_I2100 NC_011312.1 2250711 2252084 R Similar to Bacillus brevis Gramicidin synthease 1 (PDB 1AMU), evalue=1e-06 identity=(38, 136); hypothetical protein complement(2250711..2252084) Aliivibrio salmonicida LFI1238 6987585 YP_002263474.1 CDS VSAL_I2101 NC_011312.1 2252081 2252641 R membrane protein complement(2252081..2252641) Aliivibrio salmonicida LFI1238 6987586 YP_002263475.1 CDS VSAL_I2102 NC_011312.1 2252641 2252892 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2252641..2252892) Aliivibrio salmonicida LFI1238 6987587 YP_002263476.1 CDS VSAL_I2103 NC_011312.1 2252901 2253158 R acyl carrier protein complement(2252901..2253158) Aliivibrio salmonicida LFI1238 6987588 YP_002263477.1 CDS VSAL_I2104 NC_011312.1 2253166 2253963 R acyltransferase complement(2253166..2253963) Aliivibrio salmonicida LFI1238 6987589 YP_002263478.1 CDS VSAL_I2105 NC_011312.1 2253965 2254696 R hypothetical protein complement(2253965..2254696) Aliivibrio salmonicida LFI1238 6987590 YP_002263479.1 CDS VSAL_I2106 NC_011312.1 2254826 2255401 D lipoprotein 2254826..2255401 Aliivibrio salmonicida LFI1238 6987591 YP_002263480.1 CDS VSAL_I2107 NC_011312.1 2255434 2256573 D Similar to Streptomyces glaucescens Multifunctional cyclase-dehydratase-3-O-methyl transferase tcmN UniProt:P16559 (494 aa) fasta scores: E()=1.3e-05, 23.934% id in 305 aa; O-methyltransferase 2255434..2256573 Aliivibrio salmonicida LFI1238 6987592 YP_002263481.1 CDS VSAL_I2108 NC_011312.1 2256654 2257895 D FAD dependent oxidoreductase 2256654..2257895 Aliivibrio salmonicida LFI1238 6987593 YP_002263482.1 CDS VSAL_I2109 NC_011312.1 2257981 2258577 R hypothetical protein complement(2257981..2258577) Aliivibrio salmonicida LFI1238 6987594 YP_002263483.1 CDS argS NC_011312.1 2258762 2260495 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2258762..2260495 Aliivibrio salmonicida LFI1238 6987595 YP_002263484.1 CDS VSAL_I2111 NC_011312.1 2260574 2261023 R Expression may be stress-induced; hypothetical protein complement(2260574..2261023) Aliivibrio salmonicida LFI1238 6988257 YP_002263485.1 CDS ackA NC_011312.1 2261339 2262535 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2261339..2262535 Aliivibrio salmonicida LFI1238 6987596 YP_002263486.1 CDS pta NC_011312.1 2262635 2264806 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2262635..2264806 Aliivibrio salmonicida LFI1238 6988218 YP_002263487.1 CDS VSAL_I2114 NC_011312.1 2264949 2266436 R transposase complement(2264949..2266436) Aliivibrio salmonicida LFI1238 6989026 YP_002263488.1 CDS VSAL_I2115 NC_011312.1 2266508 2266855 R transposase complement(2266508..2266855) Aliivibrio salmonicida LFI1238 6987597 YP_002263489.1 CDS VSAL_I2116 NC_011312.1 2266852 2267166 R transposase complement(2266852..2267166) Aliivibrio salmonicida LFI1238 6987598 YP_002263490.1 CDS VSAL_I2118 NC_011312.1 2269187 2270008 D Expression may be regulated by Fur; phosphate ABC transporter extracellular solute-binding protein 2269187..2270008 Aliivibrio salmonicida LFI1238 6987600 YP_002263491.1 CDS pstC NC_011312.1 2270085 2271011 D Similar to Streptococcus pneumoniae Transmembrane protein PstC UniProt:Q9X4T1 (271 aa) fasta scores: E()=2.7e-34, 46.840% id in 269 aa; phosphate ABC transporter permease 2270085..2271011 Aliivibrio salmonicida LFI1238 6987601 YP_002263492.1 CDS pstA NC_011312.1 2271016 2271870 D Similar to Streptococcus pneumoniae Phosphate ABC transporter PstA UniProt:Q9X4T2 (271 aa) fasta scores: E()=5.8e-37, 47.566% id in 267 aa; phosphate ABC transporter permease 2271016..2271870 Aliivibrio salmonicida LFI1238 6989024 YP_002263493.1 CDS pstB NC_011312.1 2271945 2272694 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 2271945..2272694 Aliivibrio salmonicida LFI1238 6989020 YP_002263494.1 CDS VSAL_I2124 NC_011312.1 2273538 2273888 R hypothetical protein complement(2273538..2273888) Aliivibrio salmonicida LFI1238 6988714 YP_002263495.1 CDS VSAL_I2125 NC_011312.1 2274021 2274284 R hypothetical protein complement(2274021..2274284) Aliivibrio salmonicida LFI1238 6987603 YP_002263496.1 CDS VSAL_I2126 NC_011312.1 2274292 2274684 R hypothetical protein complement(2274292..2274684) Aliivibrio salmonicida LFI1238 6987604 YP_002263497.1 CDS VSAL_I2127 NC_011312.1 2274875 2275048 D hypothetical protein 2274875..2275048 Aliivibrio salmonicida LFI1238 6987605 YP_002263498.1 CDS VSAL_I2128 NC_011312.1 2275254 2275844 D hypothetical protein 2275254..2275844 Aliivibrio salmonicida LFI1238 6987606 YP_002263499.1 CDS VSAL_I2129 NC_011312.1 2275921 2276547 D hypothetical protein 2275921..2276547 Aliivibrio salmonicida LFI1238 6987607 YP_002263500.1 CDS VSAL_I2130 NC_011312.1 2276649 2278289 R Similar to Pseudomonas aeruginosa Chemotactic transducer PctB UniProt:O32443 (629 aa) fasta scores: E()=1e-36, 38.950% id in 362 aa; methyl-accepting chemotaxis protein complement(2276649..2278289) Aliivibrio salmonicida LFI1238 6987608 YP_002263501.1 CDS VSAL_I2131 NC_011312.1 2278417 2281293 R response regulator, histidine kinase complement(2278417..2281293) Aliivibrio salmonicida LFI1238 6987609 YP_002263502.1 CDS torT NC_011312.1 2281368 2282363 D periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 2281368..2282363 Aliivibrio salmonicida LFI1238 6987610 YP_002263503.1 CDS mgsA NC_011312.1 2282428 2282883 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 2282428..2282883 Aliivibrio salmonicida LFI1238 6989313 YP_002263504.1 CDS helD NC_011312.1 2282975 2285038 R catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV complement(2282975..2285038) Aliivibrio salmonicida LFI1238 6988802 YP_002263505.1 CDS VSAL_I2135 NC_011312.1 2285204 2287408 D Similar to Escherichia coli Inner membrane protein YccS UniProt:P75870 (717 aa) fasta scores: E()=8.4e-107, 43.115% id in 719 aa. Possible alternative translational start site after codon 10; hypothetical protein 2285204..2287408 Aliivibrio salmonicida LFI1238 6987611 YP_002263506.1 CDS nspC NC_011312.1 2287475 2288620 R Possible alternative translational start site after codon 4; carboxynorspermidine decarboxylase complement(2287475..2288620) Aliivibrio salmonicida LFI1238 6987612 YP_002263507.1 CDS VSAL_I2137 NC_011312.1 2288695 2289939 R saccharopine dehydrogenase complement(2288695..2289939) Aliivibrio salmonicida LFI1238 6988919 YP_002263508.1 CDS VSAL_I2138 NC_011312.1 2289942 2292845 R Similar to N-terminal part of Rhizobium meliloti Diaminobutyrate--2-oxoglutarate aminotransferase RhbA UniProt:Q9Z3R2 (470 aa) fasta scores: E()=3.9e-85, 51.306% id in 421 aa, which is involved in siderophore biosynthesis; diaminobutyrate--2-oxoglutarate aminotransferase complement(2289942..2292845) Aliivibrio salmonicida LFI1238 6987613 YP_002263509.1 CDS pgsA NC_011312.1 2294246 2294800 R CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2294246..2294800) Aliivibrio salmonicida LFI1238 6988161 YP_002263510.1 CDS uvrC NC_011312.1 2294845 2296671 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2294845..2296671) Aliivibrio salmonicida LFI1238 6988968 YP_002263511.1 CDS varA NC_011312.1 2296671 2297315 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(2296671..2297315) Aliivibrio salmonicida LFI1238 6989367 YP_002263512.1 CDS polB NC_011312.1 2297501 2299870 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(2297501..2299870) Aliivibrio salmonicida LFI1238 6989371 YP_002263513.1 CDS VSAL_I2143 NC_011312.1 2299874 2300650 R hypothetical protein complement(2299874..2300650) Aliivibrio salmonicida LFI1238 6988993 YP_002263514.1 CDS VSAL_I2144 NC_011312.1 2300762 2302348 R Similar to Bacillus subtilis Malate-2H(+)/Na(+)-lactate antiporter MleN UniProt:P54571 (468 aa) fasta scores: E()=2.6e-06, 31.034% id in 174 aa. Expression may be regulated by Fur; sodium/proton antiporter complement(2300762..2302348) Aliivibrio salmonicida LFI1238 6987615 YP_002263515.1 CDS VSAL_I2145 NC_011312.1 2302858 2303271 D DNA binding protein, global metabolism regulator 2302858..2303271 Aliivibrio salmonicida LFI1238 6987616 YP_002263516.1 CDS VSAL_I2146 NC_011312.1 2303350 2304102 R Similar to Escherichia coli MltA-interacting protein precursor MipA UniProt:P0A908 (248 aa) fasta scores: E()=4.3e-20, 29.876% id in 241 aa; MltA-interacting protein MipA complement(2303350..2304102) Aliivibrio salmonicida LFI1238 6987617 YP_002263517.1 CDS fadR NC_011312.1 2304376 2305218 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(2304376..2305218) Aliivibrio salmonicida LFI1238 6987618 YP_002263518.1 CDS nhaB NC_011312.1 2305666 2307261 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2305666..2307261 Aliivibrio salmonicida LFI1238 6988479 YP_002263519.1 CDS dsbB NC_011312.1 2307336 2307851 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2307336..2307851 Aliivibrio salmonicida LFI1238 6987619 YP_002263520.1 CDS VSAL_I2150 NC_011312.1 2307941 2308555 R hypothetical protein complement(2307941..2308555) Aliivibrio salmonicida LFI1238 6988424 YP_002263521.1 CDS VSAL_I2151 NC_011312.1 2308657 2309217 D Similar to Vibrio cholerae Immature fimbrillin precursor FimA UniProt:Q79F49 (175 aa) fasta scores: E()=9.3e-08, 31.548% id in 168 aa; membrane protein 2308657..2309217 Aliivibrio salmonicida LFI1238 6987620 YP_002263522.1 CDS dusC NC_011312.1 2309269 2310216 D tRNA-dihydrouridine synthase C 2309269..2310216 Aliivibrio salmonicida LFI1238 6987621 YP_002263523.1 CDS VSAL_I2153 NC_011312.1 2310236 2311708 R membrane associated GGDEF protein complement(2310236..2311708) Aliivibrio salmonicida LFI1238 6988433 YP_002263524.1 CDS VSAL_I2154 NC_011312.1 2311829 2312656 R Expression may be stress-induced; hypothetical protein complement(2311829..2312656) Aliivibrio salmonicida LFI1238 6987622 YP_002263525.1 CDS topB NC_011312.1 2312740 2314683 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2312740..2314683) Aliivibrio salmonicida LFI1238 6987623 YP_002263526.1 CDS fadH NC_011312.1 2314770 2316773 R 2,4-dienoyl-CoA reductase complement(2314770..2316773) Aliivibrio salmonicida LFI1238 6989310 YP_002263527.1 CDS sppA NC_011312.1 2317002 2318855 D protease IV (endopeptidase IV) 2317002..2318855 Aliivibrio salmonicida LFI1238 6988476 YP_002263528.1 CDS ansA NC_011312.1 2318948 2319961 D converts asparagine to aspartate and ammonia; asparaginase 2318948..2319961 Aliivibrio salmonicida LFI1238 6989256 YP_002263529.1 CDS VSAL_I2159 NC_011312.1 2320044 2321159 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(2320044..2321159) Aliivibrio salmonicida LFI1238 6988236 YP_002263530.1 CDS VSAL_I2161 NC_011312.1 2323253 2323567 D transposase 2323253..2323567 Aliivibrio salmonicida LFI1238 6987625 YP_002263531.1 CDS VSAL_I2162 NC_011312.1 2323564 2323911 D transposase 2323564..2323911 Aliivibrio salmonicida LFI1238 6987626 YP_002263532.1 CDS VSAL_I2163 NC_011312.1 2323983 2325470 D transposase 2323983..2325470 Aliivibrio salmonicida LFI1238 6987627 YP_002263533.1 CDS VSAL_I2165 NC_011312.1 2328370 2328840 D Expression may be stress-induced; phosphohistidine phosphatase SixA 2328370..2328840 Aliivibrio salmonicida LFI1238 6987629 YP_002263534.1 CDS VSAL_I2166 NC_011312.1 2328885 2329418 R hypothetical protein complement(2328885..2329418) Aliivibrio salmonicida LFI1238 6987630 YP_002263535.1 CDS VSAL_I2167 NC_011312.1 2329458 2330402 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2329458..2330402 Aliivibrio salmonicida LFI1238 6987631 YP_002263536.1 CDS aroC NC_011312.1 2330804 2331889 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2330804..2331889 Aliivibrio salmonicida LFI1238 6987632 YP_002263537.1 CDS VSAL_I2169 NC_011312.1 2332077 2332718 R Similar to Escherichia coli inner membrane protein YicG UniProt:P0AGM3 (205 aa) fasta scores: E()=6.1e-41, 58.794% id in 199 aa; hypothetical protein complement(2332077..2332718) Aliivibrio salmonicida LFI1238 6988260 YP_002263538.1 CDS VSAL_I2170 NC_011312.1 2332851 2333357 R Similar to Salmonella typhimurium Mg(2+) transport ATPase protein C MgtC UniProt:P22037 (231 aa) fasta scores: E()=2.4e-08, 34.921% id in 126 aa; MgtC/SapB transporter complement(2332851..2333357) Aliivibrio salmonicida LFI1238 6987633 YP_002263539.1 CDS VSAL_I2171 NC_011312.1 2333546 2334076 D hypothetical protein 2333546..2334076 Aliivibrio salmonicida LFI1238 6987634 YP_002263540.1 CDS VSAL_I2172 NC_011312.1 2334084 2334341 D hypothetical protein 2334084..2334341 Aliivibrio salmonicida LFI1238 6987635 YP_002263541.1 CDS VSAL_I2173 NC_011312.1 2334448 2335581 D diguanylate cyclase 2334448..2335581 Aliivibrio salmonicida LFI1238 6987636 YP_002263542.1 CDS VSAL_I2174 NC_011312.1 2335631 2336056 R hypothetical protein complement(2335631..2336056) Aliivibrio salmonicida LFI1238 6987637 YP_002263543.1 CDS VSAL_I2175 NC_011312.1 2336134 2337075 D Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2336134..2337075 Aliivibrio salmonicida LFI1238 6987638 YP_002263544.1 CDS clcA NC_011312.1 2337528 2338928 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 2337528..2338928 Aliivibrio salmonicida LFI1238 6987639 YP_002263545.1 CDS VSAL_I2178 NC_011312.1 2339267 2340754 R transposase complement(2339267..2340754) Aliivibrio salmonicida LFI1238 6988330 YP_002263546.1 CDS VSAL_I2179 NC_011312.1 2340826 2341173 R transposase complement(2340826..2341173) Aliivibrio salmonicida LFI1238 6987640 YP_002263547.1 CDS VSAL_I2180 NC_011312.1 2341170 2341484 R transposase complement(2341170..2341484) Aliivibrio salmonicida LFI1238 6987641 YP_002263548.1 CDS rrmA NC_011312.1 2342095 2342904 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A complement(2342095..2342904) Aliivibrio salmonicida LFI1238 6987642 YP_002263549.1 CDS VSAL_I2182 NC_011312.1 2343403 2344461 D Similar to Enterobacter cloacae Outer membrane pore protein E precursor PhoE UniProt:Q47490 (350 aa) fasta scores: E()=4.6e-11, 28.460% id in 383 aa; outer membrane protein, porin 2343403..2344461 Aliivibrio salmonicida LFI1238 6989209 YP_002263550.1 CDS VSAL_I2183 NC_011312.1 2344658 2345158 R hypothetical protein complement(2344658..2345158) Aliivibrio salmonicida LFI1238 6987643 YP_002263551.1 CDS fhs NC_011312.1 2345262 2346926 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(2345262..2346926) Aliivibrio salmonicida LFI1238 6987644 YP_002263552.1 CDS VSAL_I2186 NC_011312.1 2348783 2349457 D HTH-type transcriptional regulator, two-component response regulator 2348783..2349457 Aliivibrio salmonicida LFI1238 6987645 YP_002263553.1 CDS VSAL_I2187 NC_011312.1 2349468 2349938 D hypothetical protein 2349468..2349938 Aliivibrio salmonicida LFI1238 6987646 YP_002263554.1 CDS VSAL_I2188 NC_011312.1 2349981 2350862 D phospholipase 2349981..2350862 Aliivibrio salmonicida LFI1238 6987647 YP_002263555.1 CDS rhlE NC_011312.1 2350959 2352155 R Similar to Escherichia coli ATP-dependent RNA helicase RhlE UniProt:P25888 (454 aa) fasta scores: E()=3.9e-67, 53.665% id in 382 aa; ATP-dependent RNA helicase complement(2350959..2352155) Aliivibrio salmonicida LFI1238 6987648 YP_002263556.1 CDS VSAL_I2190 NC_011312.1 2352426 2353952 R integral membrane protein complement(2352426..2353952) Aliivibrio salmonicida LFI1238 6989093 YP_002263557.1 CDS VSAL_I2191 NC_011312.1 2353969 2354469 R membrane protein complement(2353969..2354469) Aliivibrio salmonicida LFI1238 6987649 YP_002263558.1 CDS VSAL_I2192 NC_011312.1 2354605 2355591 R hypothetical protein complement(2354605..2355591) Aliivibrio salmonicida LFI1238 6987650 YP_002263559.1 CDS VSAL_I2193 NC_011312.1 2355915 2358008 R methyl-accepting chemotaxis protein complement(2355915..2358008) Aliivibrio salmonicida LFI1238 6987651 YP_002263560.1 CDS VSAL_I2194 NC_011312.1 2358242 2358670 D lipoprotein 2358242..2358670 Aliivibrio salmonicida LFI1238 6987652 YP_002263561.1 CDS purB NC_011312.1 2358786 2360156 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2358786..2360156) Aliivibrio salmonicida LFI1238 6987653 YP_002263562.1 CDS VSAL_I2196 NC_011312.1 2360227 2360844 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(2360227..2360844) Aliivibrio salmonicida LFI1238 6989035 YP_002263563.1 CDS mnmA NC_011312.1 2360856 2361980 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2360856..2361980) Aliivibrio salmonicida LFI1238 6987654 YP_002263564.1 CDS norR NC_011312.1 2362097 2363635 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(2362097..2363635) Aliivibrio salmonicida LFI1238 6989325 YP_002263565.1 CDS norV NC_011312.1 2363823 2365322 D detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2363823..2365322 Aliivibrio salmonicida LFI1238 6988902 YP_002263566.1 CDS norW NC_011312.1 2365334 2366479 D catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2365334..2366479 Aliivibrio salmonicida LFI1238 6988903 YP_002263567.1 CDS fpr NC_011312.1 2366492 2367265 D ferredoxin--NADP reductase 2366492..2367265 Aliivibrio salmonicida LFI1238 6988904 YP_002263568.1 CDS VSAL_I2202 NC_011312.1 2367304 2367639 D hypothetical protein 2367304..2367639 Aliivibrio salmonicida LFI1238 6988559 YP_002263569.1 CDS VSAL_I2203 NC_011312.1 2367699 2367971 D hypothetical protein 2367699..2367971 Aliivibrio salmonicida LFI1238 6987655 YP_002263570.1 CDS rluE NC_011312.1 2368327 2368959 R ribosomal large subunit pseudouridine synthase E complement(2368327..2368959) Aliivibrio salmonicida LFI1238 6987656 YP_002263571.1 CDS icd NC_011312.1 2369130 2371358 D isocitrate dehydrogenase 2369130..2371358 Aliivibrio salmonicida LFI1238 6989112 YP_002263572.1 CDS VSAL_I2206 NC_011312.1 2371466 2372983 R Similar to Bacillus subtilis Stage V sporulation protein R SpoVR UniProt:P37875 (468 aa) fasta scores: E()=6.1e-33, 32.976% id in 467 aa; SpoVR family protein complement(2371466..2372983) Aliivibrio salmonicida LFI1238 6988701 YP_002263573.1 CDS VSAL_I2207 NC_011312.1 2372995 2374263 R hypothetical protein complement(2372995..2374263) Aliivibrio salmonicida LFI1238 6987657 YP_002263574.1 CDS prkA NC_011312.1 2374331 2376265 R Similar to Bacillus subtilis Protein PrkA UniProt:P39134 (631 aa) fasta scores: E()=2.1e-47, 33.390% id in 587 aa; PrkA serine protein kinase complement(2374331..2376265) Aliivibrio salmonicida LFI1238 6987658 YP_002263575.1 CDS folD NC_011312.1 2376454 2377311 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2376454..2377311) Aliivibrio salmonicida LFI1238 6989008 YP_002263576.1 CDS VSAL_I2210 NC_011312.1 2377762 2379219 D hypothetical protein 2377762..2379219 Aliivibrio salmonicida LFI1238 6988162 YP_002263577.1 CDS VSAL_I2211 NC_011312.1 2379264 2379809 R lipoprotein complement(2379264..2379809) Aliivibrio salmonicida LFI1238 6987659 YP_002263578.1 CDS cspD NC_011312.1 2379927 2380148 R cold shock-like protein CspD complement(2379927..2380148) Aliivibrio salmonicida LFI1238 6987660 YP_002263579.1 CDS clpS NC_011312.1 2380544 2380864 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2380544..2380864 Aliivibrio salmonicida LFI1238 6988355 YP_002263580.1 CDS clpA NC_011312.1 2380907 2383159 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 2380907..2383159 Aliivibrio salmonicida LFI1238 6988334 YP_002263581.1 CDS infA NC_011312.1 2383273 2383491 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2383273..2383491) Aliivibrio salmonicida LFI1238 6988331 YP_002263582.1 CDS VSAL_I2216 NC_011312.1 2383581 2384273 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(2383581..2384273) Aliivibrio salmonicida LFI1238 6988716 YP_002263583.1 CDS aat NC_011312.1 2384277 2384987 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2384277..2384987) Aliivibrio salmonicida LFI1238 6987661 YP_002263584.1 CDS aroA NC_011312.1 2385186 2386469 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2385186..2386469 Aliivibrio salmonicida LFI1238 6988208 YP_002263585.1 CDS cmk NC_011312.1 2386625 2387299 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2386625..2387299 Aliivibrio salmonicida LFI1238 6988258 YP_002263586.1 CDS rpsA NC_011312.1 2387396 2389069 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2387396..2389069 Aliivibrio salmonicida LFI1238 6988336 YP_002263587.1 CDS ihfB NC_011312.1 2389129 2389410 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2389129..2389410 Aliivibrio salmonicida LFI1238 6989188 YP_002263588.1 CDS yciS NC_011312.1 2389599 2389883 D Similar to Escherichia coli Inner membrane protein YciS UniProt:P0ACV4 (102 aa) fasta scores: E()=1.6e-10, 42.169% id in 83 aa; hypothetical protein 2389599..2389883 Aliivibrio salmonicida LFI1238 6988703 YP_002263589.1 CDS VSAL_I2224 NC_011312.1 2389891 2391060 D tetratricopeptide repeat protein 2389891..2391060 Aliivibrio salmonicida LFI1238 6989426 YP_002263590.1 CDS pyrF NC_011312.1 2391116 2391820 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2391116..2391820 Aliivibrio salmonicida LFI1238 6987662 YP_002263591.1 CDS metG NC_011312.1 2391897 2393957 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2391897..2393957) Aliivibrio salmonicida LFI1238 6989051 YP_002263592.1 CDS VSAL_I2227 NC_011312.1 2394090 2395157 D hypothetical protein 2394090..2395157 Aliivibrio salmonicida LFI1238 6988793 YP_002263593.1 CDS udk NC_011312.1 2395269 2395916 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2395269..2395916 Aliivibrio salmonicida LFI1238 6987663 YP_002263594.1 CDS VSAL_I2229 NC_011312.1 2396081 2398240 D Similar to Escherichia coli Protein asmA precursor UniProt:P28249 (617 aa) fasta scores: E()=6.8e-07, 20.642% id in 717 aa. Possible alternative translational start site after codon 4. Expression may be regulated by Fur; outer membrane assembly protein 2396081..2398240 Aliivibrio salmonicida LFI1238 6989355 YP_002263595.1 CDS btuR NC_011312.1 2398309 2398911 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(2398309..2398911) Aliivibrio salmonicida LFI1238 6987664 YP_002263596.1 CDS VSAL_I2231 NC_011312.1 2399172 2400494 D Similar to Vibrio vulnificus Hypothetical protein vv2095. UniProt:Q7MJR5 (509 aa) fasta scores: E()=1.7e-84, 55.000% id in 440 aa. No significant database matches to the full length CDS. Expression may be regulated by Fur; metal dependent phosphohydrolase 2399172..2400494 Aliivibrio salmonicida LFI1238 6988295 YP_002263597.1 CDS VSAL_I2232 NC_011312.1 2400552 2402099 R sulfate transporter complement(2400552..2402099) Aliivibrio salmonicida LFI1238 6987665 YP_002263598.1 CDS rne NC_011312.1 2402274 2405321 R ribonuclease E complement(2402274..2405321) Aliivibrio salmonicida LFI1238 6987666 YP_002263599.1 CDS rluC NC_011312.1 2405765 2406712 D ribosomal large subunit pseudouridine synthase C (rRNA uridine isomerase C) (rRNA pseudouridylate synthase C) 2405765..2406712 Aliivibrio salmonicida LFI1238 6989130 YP_002263600.1 CDS VSAL_I2235 NC_011312.1 2406791 2407372 R Similar to Escherichia coli Maf-like protein YceF UniProt:P0A729 (194 aa) fasta scores: E()=2.1e-41, 59.677% id in 186 aa; Maf-like protein complement(2406791..2407372) Aliivibrio salmonicida LFI1238 6989110 YP_002263601.1 CDS VSAL_I2236 NC_011312.1 2407506 2408027 D hypothetical protein 2407506..2408027 Aliivibrio salmonicida LFI1238 6987667 YP_002263602.1 CDS rpmF NC_011312.1 2408044 2408214 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2408044..2408214 Aliivibrio salmonicida LFI1238 6987668 YP_002263603.1 CDS plsX NC_011312.1 2408225 2409250 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2408225..2409250 Aliivibrio salmonicida LFI1238 6989175 YP_002263604.1 CDS fabH NC_011312.1 2409256 2410209 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2409256..2410209 Aliivibrio salmonicida LFI1238 6988989 YP_002263605.1 CDS fabD NC_011312.1 2410270 2411193 D malonyl CoA-acyl carrier protein transacylase 2410270..2411193 Aliivibrio salmonicida LFI1238 6988470 YP_002263606.1 CDS fabG NC_011312.1 2411210 2411947 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2411210..2411947 Aliivibrio salmonicida LFI1238 6988465 YP_002263607.1 CDS fabF NC_011312.1 2412442 2413683 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 2412442..2413683 Aliivibrio salmonicida LFI1238 6988469 YP_002263608.1 CDS VSAL_I2243 NC_011312.1 2413782 2414588 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 2413782..2414588 Aliivibrio salmonicida LFI1238 6988467 YP_002263609.1 CDS VSAL_I2244 NC_011312.1 2414582 2415592 D Possible alternative translational start site after codon 42; aminodeoxychorismate lyase 2414582..2415592 Aliivibrio salmonicida LFI1238 6987669 YP_002263610.1 CDS tmk NC_011312.1 2415595 2416227 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2415595..2416227 Aliivibrio salmonicida LFI1238 6987670 YP_002263611.1 CDS VSAL_I2246 NC_011312.1 2416217 2417188 D Similar to Escherichia coli DNA polymerase III delta' subunit UniProt:P28631 (334 aa) fasta scores: E()=5.8e-21, 29.467% id in 319 aa; DNA polymerase III subunit delta' 2416217..2417188 Aliivibrio salmonicida LFI1238 6989301 YP_002263612.1 CDS VSAL_I2247 NC_011312.1 2417190 2417960 D TatD-related deoxyribonuclease 2417190..2417960 Aliivibrio salmonicida LFI1238 6987671 YP_002263613.1 CDS VSAL_I2248 NC_011312.1 2418149 2418463 D transposase 2418149..2418463 Aliivibrio salmonicida LFI1238 6987672 YP_002263614.1 CDS VSAL_I2249 NC_011312.1 2418460 2418807 D transposase 2418460..2418807 Aliivibrio salmonicida LFI1238 6987673 YP_002263615.1 CDS VSAL_I2250 NC_011312.1 2418879 2420366 D transposase 2418879..2420366 Aliivibrio salmonicida LFI1238 6987674 YP_002263616.1 CDS VSAL_I2251 NC_011312.1 2420806 2421687 D transposase 2420806..2421687 Aliivibrio salmonicida LFI1238 6987675 YP_002263617.1 CDS ptsG NC_011312.1 2421738 2423168 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 2421738..2423168 Aliivibrio salmonicida LFI1238 6987676 YP_002263618.1 CDS VSAL_I2253 NC_011312.1 2423227 2423868 R hypothetical protein complement(2423227..2423868) Aliivibrio salmonicida LFI1238 6989028 YP_002263619.1 CDS VSAL_I2254 NC_011312.1 2424041 2425507 R sodium-dependent transporter complement(2424041..2425507) Aliivibrio salmonicida LFI1238 6987677 YP_002263620.1 CDS VSAL_I2255 NC_011312.1 2425889 2426470 R hypothetical protein complement(2425889..2426470) Aliivibrio salmonicida LFI1238 6987678 YP_002263621.1 CDS VSAL_I2257 NC_011312.1 2430852 2431079 D Expression may be regulated by Fur; ferrous iron transport protein FeoA 2430852..2431079 Aliivibrio salmonicida LFI1238 6987680 YP_002263622.1 CDS feoB NC_011312.1 2431081 2433357 D ferrous iron transport protein FeoB 2431081..2433357 Aliivibrio salmonicida LFI1238 6987681 YP_002263623.1 CDS VSAL_I2259 NC_011312.1 2433354 2433596 D hypothetical protein 2433354..2433596 Aliivibrio salmonicida LFI1238 6988491 YP_002263624.1 CDS VSAL_I2260 NC_011312.1 2433749 2434063 D transposase 2433749..2434063 Aliivibrio salmonicida LFI1238 6987682 YP_002263625.1 CDS VSAL_I2261 NC_011312.1 2434060 2434407 D transposase 2434060..2434407 Aliivibrio salmonicida LFI1238 6987683 YP_002263626.1 CDS VSAL_I2262 NC_011312.1 2434479 2435966 D transposase 2434479..2435966 Aliivibrio salmonicida LFI1238 6987684 YP_002263627.1 CDS VSAL_I2264 NC_011312.1 2436860 2438347 R transposase complement(2436860..2438347) Aliivibrio salmonicida LFI1238 6987686 YP_002263628.1 CDS VSAL_I2266b NC_011312.1 2438762 2439076 R transposase complement(2438762..2439076) Aliivibrio salmonicida LFI1238 6987688 YP_002263630.1 CDS fadI NC_011312.1 2441416 2442759 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(2441416..2442759) Aliivibrio salmonicida LFI1238 6987691 YP_002263631.1 CDS VSAL_I2269 NC_011312.1 2443564 2444811 D Similar to Escherichia coli Long-chain fatty acid transport protein precursor FadL UniProt:P10384 (448 aa) fasta scores: E()=4.5e-22, 34.273% id in 461 aa; outer membrane protein transport protein 2443564..2444811 Aliivibrio salmonicida LFI1238 6988478 YP_002263632.1 CDS VSAL_I2270 NC_011312.1 2445467 2446783 D Similar to Escherichia coli Long-chain fatty acid transport protein precursor FadL UniProt:P10384 (448 aa) fasta scores: E()=6.3e-15, 32.096% id in 458 aa; outer membrane protein transport protein 2445467..2446783 Aliivibrio salmonicida LFI1238 6987692 YP_002263633.1 CDS VSAL_I2271 NC_011312.1 2446974 2447582 D Similar to Escherichia coli Inner membrane protein yjdF UniProt:P39270 (209 aa) fasta scores: E()=8.4e-15, 29.381% id in 194 aa; hypothetical protein 2446974..2447582 Aliivibrio salmonicida LFI1238 6987693 YP_002263634.1 CDS vacJ NC_011312.1 2447622 2448407 R lipoprotein VacJ precursor complement(2447622..2448407) Aliivibrio salmonicida LFI1238 6987694 YP_002263635.1 CDS VSAL_I2273 NC_011312.1 2448561 2449775 R Similar to Escherichia coli cytochrome C biogenesis protein ccmH precursor UniProt:P0ABM9 (350 aa) fasta scores: E()=1.2e-21, 34.419% id in 215 aa; cytochrome C biogenesis protein precursor complement(2448561..2449775) Aliivibrio salmonicida LFI1238 6989369 YP_002263636.1 CDS ccmH NC_011312.1 2449772 2450278 R Similar to N-terminal part of Escherichia coli cytochrome C biogenesis protein CcmH precursor UniProt:P0ABM9 (350 aa) fasta scores: E()=4.6e-19, 49.612% id in 129 aa; cytochrome C biogenesis protein CcmH precursor complement(2449772..2450278) Aliivibrio salmonicida LFI1238 6987695 YP_002263637.1 CDS dsbE NC_011312.1 2450284 2450832 R thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG) complement(2450284..2450832) Aliivibrio salmonicida LFI1238 6988312 YP_002263638.1 CDS ccmF NC_011312.1 2450835 2452793 R cytochrome C biogenesis protein CcmF complement(2450835..2452793) Aliivibrio salmonicida LFI1238 6988427 YP_002263639.1 CDS ccmE NC_011312.1 2452835 2453275 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome C biogenesis protein CcmE complement(2452835..2453275) Aliivibrio salmonicida LFI1238 6988311 YP_002263640.1 CDS ccmD NC_011312.1 2453272 2453478 R cytochrome C biogenesis protein CcmD complement(2453272..2453478) Aliivibrio salmonicida LFI1238 6988309 YP_002263641.1 CDS ccmC NC_011312.1 2453502 2454254 R Expression may be regulated by Fur; cytochrome C biogenesis protein CcmC complement(2453502..2454254) Aliivibrio salmonicida LFI1238 6988308 YP_002263642.1 CDS ccmB NC_011312.1 2454304 2454972 R cytochrome C biogenesis protein CcmB complement(2454304..2454972) Aliivibrio salmonicida LFI1238 6988307 YP_002263643.1 CDS ccmA NC_011312.1 2454976 2455590 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(2454976..2455590) Aliivibrio salmonicida LFI1238 6988306 YP_002263644.1 CDS VSAL_I2282 NC_011312.1 2455861 2456322 R hypothetical protein complement(2455861..2456322) Aliivibrio salmonicida LFI1238 6988305 YP_002263645.1 CDS cheW NC_011312.1 2456322 2456816 R chemotaxis protein CheW complement(2456322..2456816) Aliivibrio salmonicida LFI1238 6987696 YP_002263646.1 CDS VSAL_I2284 NC_011312.1 2456845 2457936 R cheW-like protein complement(2456845..2457936) Aliivibrio salmonicida LFI1238 6988322 YP_002263647.1 CDS VSAL_I2285 NC_011312.1 2457936 2458703 R Similar to Bacillus subtilis Sporulation initiation inhibitor protein soj UniProt:P37522 (253 aa) fasta scores: E()=3.6e-25, 36.179% id in 246 aa; chromosome segregation protein complement(2457936..2458703) Aliivibrio salmonicida LFI1238 6987697 YP_002263648.1 CDS cheB NC_011312.1 2458713 2459855 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(2458713..2459855) Aliivibrio salmonicida LFI1238 6987698 YP_002263649.1 CDS cheA NC_011312.1 2459871 2462042 R chemotaxis protein CheA complement(2459871..2462042) Aliivibrio salmonicida LFI1238 6988319 YP_002263650.1 CDS cheZ NC_011312.1 2462052 2462771 R chemotaxis protein CheZ complement(2462052..2462771) Aliivibrio salmonicida LFI1238 6988318 YP_002263651.1 CDS cheY NC_011312.1 2462804 2463172 R chemotaxis protein CheY complement(2462804..2463172) Aliivibrio salmonicida LFI1238 6988324 YP_002263652.1 CDS fliA NC_011312.1 2463223 2463954 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(2463223..2463954) Aliivibrio salmonicida LFI1238 6988323 YP_002263653.1 CDS flhG NC_011312.1 2463947 2464837 R flagellar biosynthesis protein FlhG (flagellar number regulator) complement(2463947..2464837) Aliivibrio salmonicida LFI1238 6988534 YP_002263654.1 CDS flhF NC_011312.1 2464834 2466288 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(2464834..2466288) Aliivibrio salmonicida LFI1238 6988533 YP_002263655.1 CDS flhA NC_011312.1 2466352 2468445 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2466352..2468445) Aliivibrio salmonicida LFI1238 6988532 YP_002263656.1 CDS VSAL_I2294 NC_011312.1 2468734 2469408 D type IV pilus assembly (PilZ) protein 2468734..2469408 Aliivibrio salmonicida LFI1238 6988530 YP_002263657.1 CDS flhB NC_011312.1 2469423 2470553 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(2469423..2470553) Aliivibrio salmonicida LFI1238 6987699 YP_002263658.1 CDS fliR NC_011312.1 2470584 2471366 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(2470584..2471366) Aliivibrio salmonicida LFI1238 6988531 YP_002263659.1 CDS fliQ NC_011312.1 2471429 2471698 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ complement(2471429..2471698) Aliivibrio salmonicida LFI1238 6988549 YP_002263660.1 CDS fliP NC_011312.1 2471708 2472577 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(2471708..2472577) Aliivibrio salmonicida LFI1238 6988548 YP_002263661.1 CDS fliO NC_011312.1 2472564 2472953 R polar flagellar assembly protein FliO complement(2472564..2472953) Aliivibrio salmonicida LFI1238 6988547 YP_002263662.1 CDS fliN NC_011312.1 2472985 2473368 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(2472985..2473368) Aliivibrio salmonicida LFI1238 6988546 YP_002263663.1 CDS fliM NC_011312.1 2473391 2474422 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(2473391..2474422) Aliivibrio salmonicida LFI1238 6988545 YP_002263664.1 CDS fliL NC_011312.1 2474430 2474915 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(2474430..2474915) Aliivibrio salmonicida LFI1238 6988544 YP_002263665.1 CDS fliK NC_011312.1 2474973 2476196 R Similar to C-terminal part of Vibrio parahaemolyticus Polar flagellar hook-length control protein FliK UniProt:Q9Z6G3 (643 aa) fasta scores: E()=2.7e-22, 51.381% id in 181 aa; polar flagellar hook-length control protein FliK complement(2474973..2476196) Aliivibrio salmonicida LFI1238 6988543 YP_002263666.1 CDS fliJ NC_011312.1 2476388 2476825 R rod/hook and filament chaperone; flagellar biosynthesis chaperone complement(2476388..2476825) Aliivibrio salmonicida LFI1238 6988542 YP_002263667.1 CDS fliI NC_011312.1 2476882 2478201 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(2476882..2478201) Aliivibrio salmonicida LFI1238 6988541 YP_002263668.1 CDS fliH NC_011312.1 2478202 2478999 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(2478202..2478999) Aliivibrio salmonicida LFI1238 6988540 YP_002263669.1 CDS fliG NC_011312.1 2479133 2480185 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(2479133..2480185) Aliivibrio salmonicida LFI1238 6988539 YP_002263670.1 CDS fliE NC_011312.1 2481932 2482243 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(2481932..2482243) Aliivibrio salmonicida LFI1238 6988537 YP_002263671.1 CDS flaM NC_011312.1 2482344 2483780 R sigma-54 dependent response regulator complement(2482344..2483780) Aliivibrio salmonicida LFI1238 6988536 YP_002263672.1 CDS flaL NC_011312.1 2483783 2484826 R histidine kinase complement(2483783..2484826) Aliivibrio salmonicida LFI1238 6988513 YP_002263673.1 CDS flaK NC_011312.1 2484953 2486434 R sigma 54 dependent transcription regulator complement(2484953..2486434) Aliivibrio salmonicida LFI1238 6988512 YP_002263674.1 CDS fliS NC_011312.1 2486631 2487041 R flagellin specific chaperone; flagellar protein FliS complement(2486631..2487041) Aliivibrio salmonicida LFI1238 6988511 YP_002263675.1 CDS flaI NC_011312.1 2487057 2487347 R polar flagellar protein FlaI complement(2487057..2487347) Aliivibrio salmonicida LFI1238 6988510 YP_002263676.1 CDS fliD NC_011312.1 2487381 2489321 R involved in flagellin assembly; flagellar capping protein complement(2487381..2489321) Aliivibrio salmonicida LFI1238 6988509 YP_002263677.1 CDS flaE NC_011312.1 2489892 2491028 R structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin complement(2489892..2491028) Aliivibrio salmonicida LFI1238 6988508 YP_002263678.1 CDS flaD NC_011312.1 2491276 2492403 R structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin complement(2491276..2492403) Aliivibrio salmonicida LFI1238 6988506 YP_002263679.1 CDS flaC NC_011312.1 2492863 2494071 R structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin complement(2492863..2494071) Aliivibrio salmonicida LFI1238 6988505 YP_002263680.1 CDS VSAL_I2323 NC_011312.1 2496656 2497537 D transposase 2496656..2497537 Aliivibrio salmonicida LFI1238 6987702 YP_002263681.1 CDS VSAL_I2324 NC_011312.1 2498240 2498554 R transposase complement(2498240..2498554) Aliivibrio salmonicida LFI1238 6987703 YP_002263682.1 CDS flaB NC_011312.1 2498727 2499860 R structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin complement(2498727..2499860) Aliivibrio salmonicida LFI1238 6987704 YP_002263683.1 CDS VSAL_I2326 NC_011312.1 2499918 2500295 R hypothetical protein complement(2499918..2500295) Aliivibrio salmonicida LFI1238 6988503 YP_002263684.1 CDS flaA NC_011312.1 2500546 2501685 R structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin complement(2500546..2501685) Aliivibrio salmonicida LFI1238 6987705 YP_002263685.1 CDS flgL NC_011312.1 2502247 2503440 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL complement(2502247..2503440) Aliivibrio salmonicida LFI1238 6988502 YP_002263686.1 CDS flgK NC_011312.1 2503457 2505337 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(2503457..2505337) Aliivibrio salmonicida LFI1238 6988526 YP_002263687.1 CDS flgJ NC_011312.1 2505589 2506587 R Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ complement(2505589..2506587) Aliivibrio salmonicida LFI1238 6988527 YP_002263688.1 CDS flgI NC_011312.1 2506739 2507860 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(2506739..2507860) Aliivibrio salmonicida LFI1238 6988525 YP_002263689.1 CDS flgH NC_011312.1 2507863 2508648 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(2507863..2508648) Aliivibrio salmonicida LFI1238 6988524 YP_002263690.1 CDS flgG NC_011312.1 2508661 2509449 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(2508661..2509449) Aliivibrio salmonicida LFI1238 6988523 YP_002263691.1 CDS flgF NC_011312.1 2509504 2510229 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF complement(2509504..2510229) Aliivibrio salmonicida LFI1238 6988522 YP_002263692.1 CDS flgE NC_011312.1 2510467 2511765 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(2510467..2511765) Aliivibrio salmonicida LFI1238 6988521 YP_002263693.1 CDS flgD NC_011312.1 2511930 2512640 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein complement(2511930..2512640) Aliivibrio salmonicida LFI1238 6988520 YP_002263694.1 CDS flgC NC_011312.1 2512656 2513072 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(2512656..2513072) Aliivibrio salmonicida LFI1238 6988519 YP_002263695.1 CDS flgB NC_011312.1 2513075 2513470 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB complement(2513075..2513470) Aliivibrio salmonicida LFI1238 6988518 YP_002263696.1 CDS cheR NC_011312.1 2513665 2514492 R chemotaxis protein methyltransferase CheR complement(2513665..2514492) Aliivibrio salmonicida LFI1238 6988517 YP_002263697.1 CDS cheV NC_011312.1 2514564 2515484 R chemotaxis protein CheV complement(2514564..2515484) Aliivibrio salmonicida LFI1238 6988320 YP_002263698.1 CDS flgA NC_011312.1 2515559 2516305 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 2515559..2516305 Aliivibrio salmonicida LFI1238 6988321 YP_002263699.1 CDS flgM NC_011312.1 2516525 2516836 D negative regulator of flagellin synthesis FlgM, anti-sigma28 factor 2516525..2516836 Aliivibrio salmonicida LFI1238 6988516 YP_002263700.1 CDS flgN NC_011312.1 2516889 2517317 D polar flagellar FlgN, chaperone 2516889..2517317 Aliivibrio salmonicida LFI1238 6988528 YP_002263701.1 CDS VSAL_I2344 NC_011312.1 2517869 2518303 R lipoprotein complement(2517869..2518303) Aliivibrio salmonicida LFI1238 6988529 YP_002263702.1 CDS VSAL_I2345 NC_011312.1 2518312 2518947 R hypothetical protein complement(2518312..2518947) Aliivibrio salmonicida LFI1238 6987706 YP_002263703.1 CDS VSAL_I2346 NC_011312.1 2519120 2520256 D hypothetical protein 2519120..2520256 Aliivibrio salmonicida LFI1238 6987707 YP_002263704.1 CDS VSAL_I2347 NC_011312.1 2520393 2521541 D hypothetical protein 2520393..2521541 Aliivibrio salmonicida LFI1238 6987708 YP_002263705.1 CDS VSAL_I2348 NC_011312.1 2521547 2522329 D membrane associated GGDEF protein 2521547..2522329 Aliivibrio salmonicida LFI1238 6987709 YP_002263706.1 CDS VSAL_I2349 NC_011312.1 2522480 2522656 D hypothetical protein 2522480..2522656 Aliivibrio salmonicida LFI1238 6987710 YP_002263707.1 CDS gltX NC_011312.1 2522708 2524132 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2522708..2524132) Aliivibrio salmonicida LFI1238 6987711 YP_002263708.1 CDS VSAL_I2351 NC_011312.1 2524318 2525109 R lipoprotein complement(2524318..2525109) Aliivibrio salmonicida LFI1238 6988607 YP_002263709.1 CDS ligA NC_011312.1 2526803 2528812 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2526803..2528812) Aliivibrio salmonicida LFI1238 6987712 YP_002263710.1 CDS VSAL_I2354 NC_011312.1 2528903 2529829 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(2528903..2529829) Aliivibrio salmonicida LFI1238 6987713 YP_002263711.1 CDS cysZ NC_011312.1 2530101 2530853 D role in sulfur assimilation; sulfate transport protein CysZ 2530101..2530853 Aliivibrio salmonicida LFI1238 6987714 YP_002263712.1 CDS cysK NC_011312.1 2531018 2531986 D cysteine synthase A 2531018..2531986 Aliivibrio salmonicida LFI1238 6988383 YP_002263713.1 CDS ptsH NC_011312.1 2532306 2532563 D phosphocarrier protein HPr 2532306..2532563 Aliivibrio salmonicida LFI1238 6988379 YP_002263714.1 CDS ptsI NC_011312.1 2532621 2534345 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 2532621..2534345 Aliivibrio salmonicida LFI1238 6989029 YP_002263715.1 CDS crr NC_011312.1 2534422 2534931 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2534422..2534931 Aliivibrio salmonicida LFI1238 6989030 YP_002263716.1 CDS VSAL_I2360 NC_011312.1 2535025 2535930 R Dyp-type peroxidase complement(2535025..2535930) Aliivibrio salmonicida LFI1238 6988350 YP_002263717.1 CDS VSAL_I2361 NC_011312.1 2536014 2536403 R hypothetical protein complement(2536014..2536403) Aliivibrio salmonicida LFI1238 6987715 YP_002263718.1 CDS VSAL_I2362 NC_011312.1 2536415 2536870 R Similar to Escherichia coli Inner membrane protein YfeZ UniProt:P76538 (149 aa) fasta scores: E()=5.3e-09, 33.333% id in 141 aa; hypothetical protein complement(2536415..2536870) Aliivibrio salmonicida LFI1238 6987716 YP_002263719.1 CDS VSAL_I2363 NC_011312.1 2537072 2537428 D membrane protein 2537072..2537428 Aliivibrio salmonicida LFI1238 6987717 YP_002263720.1 CDS napC NC_011312.1 2537639 2538214 R cytochrome C protein NapC complement(2537639..2538214) Aliivibrio salmonicida LFI1238 6987718 YP_002263721.1 CDS napB NC_011312.1 2538247 2538720 R cytochrome C protein NapB precursor complement(2538247..2538720) Aliivibrio salmonicida LFI1238 6988883 YP_002263722.1 CDS VSAL_I2367 NC_011312.1 2541276 2541560 R NapD protein complement(2541276..2541560) Aliivibrio salmonicida LFI1238 6988881 YP_002263723.1 CDS VSAL_I2368 NC_011312.1 2541560 2542078 R ferredoxin-type protein NapF complement(2541560..2542078) Aliivibrio salmonicida LFI1238 6987719 YP_002263724.1 CDS narQ NC_011312.1 2542267 2543958 D nitrate/nitrite sensor protein NarQ 2542267..2543958 Aliivibrio salmonicida LFI1238 6987720 YP_002263725.1 CDS narP NC_011312.1 2543982 2544593 D nitrate/nitrite response regulator protein NarP 2543982..2544593 Aliivibrio salmonicida LFI1238 6988885 YP_002263726.1 CDS VSAL_I2371 NC_011312.1 2544595 2544930 D lipoprotein 2544595..2544930 Aliivibrio salmonicida LFI1238 6988884 YP_002263727.1 CDS VSAL_I2372 NC_011312.1 2545014 2545295 R Expression may be regulated by Fur; hypothetical protein complement(2545014..2545295) Aliivibrio salmonicida LFI1238 6987721 YP_002263728.1 CDS VSAL_I2373 NC_011312.1 2545461 2545745 R Expression may be stress-induced; hypothetical protein complement(2545461..2545745) Aliivibrio salmonicida LFI1238 6987722 YP_002263729.1 CDS VSAL_I2374 NC_011312.1 2545924 2546226 D arsenate reductase 2545924..2546226 Aliivibrio salmonicida LFI1238 6987723 YP_002263730.1 CDS dapE NC_011312.1 2546317 2547450 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2546317..2547450 Aliivibrio salmonicida LFI1238 6987724 YP_002263731.1 CDS VSAL_I2376 NC_011312.1 2547510 2548178 D D-alanyl-D-alanine carboxypeptidase 2547510..2548178 Aliivibrio salmonicida LFI1238 6988391 YP_002263732.1 CDS VSAL_I2377 NC_011312.1 2548181 2548351 D hypothetical protein 2548181..2548351 Aliivibrio salmonicida LFI1238 6987725 YP_002263733.1 CDS VSAL_I2378 NC_011312.1 2548424 2549476 R Similar to Escherichia coli Lipoprotein 34 precursor NlpB UniProt:P0A903 (344 aa) fasta scores: E()=1.6e-33, 33.832% id in 334 aa; lipoprotein complement(2548424..2549476) Aliivibrio salmonicida LFI1238 6987726 YP_002263734.1 CDS dapA NC_011312.1 2549488 2550369 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2549488..2550369) Aliivibrio salmonicida LFI1238 6987727 YP_002263735.1 CDS gcvR NC_011312.1 2550645 2551172 D glycine cleavage system transcriptional repressor (Gcv operon repressor) 2550645..2551172 Aliivibrio salmonicida LFI1238 6988388 YP_002263736.1 CDS bcp NC_011312.1 2551200 2551670 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2551200..2551670 Aliivibrio salmonicida LFI1238 6988587 YP_002263737.1 CDS VSAL_I2382 NC_011312.1 2551746 2552813 R membrane protein complement(2551746..2552813) Aliivibrio salmonicida LFI1238 6988287 YP_002263738.1 CDS VSAL_I2383 NC_011312.1 2552815 2553042 R hypothetical protein complement(2552815..2553042) Aliivibrio salmonicida LFI1238 6987728 YP_002263739.1 CDS VSAL_I2384 NC_011312.1 2553230 2554684 D peptidase 2553230..2554684 Aliivibrio salmonicida LFI1238 6987729 YP_002263740.1 CDS VSAL_I2385 NC_011312.1 2554711 2555061 D arsenate reductase 2554711..2555061 Aliivibrio salmonicida LFI1238 6987730 YP_002263741.1 CDS VSAL_I2386 NC_011312.1 2555082 2555522 D hypothetical protein 2555082..2555522 Aliivibrio salmonicida LFI1238 6987731 YP_002263742.1 CDS VSAL_I2387 NC_011312.1 2555609 2556805 R hypothetical protein complement(2555609..2556805) Aliivibrio salmonicida LFI1238 6987732 YP_002263743.1 CDS pyrP NC_011312.1 2557012 2558262 D uracil permease 2557012..2558262 Aliivibrio salmonicida LFI1238 6987733 YP_002263744.1 CDS upp NC_011312.1 2558416 2559042 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2558416..2559042) Aliivibrio salmonicida LFI1238 6989055 YP_002263745.1 CDS purM NC_011312.1 2559268 2560308 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2559268..2560308 Aliivibrio salmonicida LFI1238 6989358 YP_002263746.1 CDS purN NC_011312.1 2560436 2561080 D phosphoribosylglycinamide formyltransferase 2560436..2561080 Aliivibrio salmonicida LFI1238 6989042 YP_002263747.1 CDS VSAL_I2392 NC_011312.1 2561138 2561965 R amidotransferase complement(2561138..2561965) Aliivibrio salmonicida LFI1238 6989043 YP_002263748.1 CDS gmhA NC_011312.1 2562000 2562581 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(2562000..2562581) Aliivibrio salmonicida LFI1238 6987734 YP_002263749.1 CDS VSAL_I2394 NC_011312.1 2562847 2563728 D transposase 2562847..2563728 Aliivibrio salmonicida LFI1238 6988612 YP_002263750.1 CDS fadE NC_011312.1 2563944 2566391 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2563944..2566391 Aliivibrio salmonicida LFI1238 6987735 YP_002263751.1 CDS VSAL_I2396 NC_011312.1 2566470 2566646 R hypothetical protein complement(2566470..2566646) Aliivibrio salmonicida LFI1238 6988475 YP_002263752.1 CDS VSAL_I2397 NC_011312.1 2566806 2568068 R hypothetical protein complement(2566806..2568068) Aliivibrio salmonicida LFI1238 6987736 YP_002263753.1 CDS dnaQ NC_011312.1 2568079 2568810 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(2568079..2568810) Aliivibrio salmonicida LFI1238 6987737 YP_002263754.1 CDS rnhA NC_011312.1 2568848 2569321 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2568848..2569321 Aliivibrio salmonicida LFI1238 6988420 YP_002263755.1 CDS VSAL_I2400 NC_011312.1 2569318 2570061 R hypothetical protein complement(2569318..2570061) Aliivibrio salmonicida LFI1238 6989137 YP_002263756.1 CDS VSAL_I2401 NC_011312.1 2570113 2570871 D metallo-beta-lactamase 2570113..2570871 Aliivibrio salmonicida LFI1238 6987738 YP_002263757.1 CDS mltD NC_011312.1 2570958 2572511 D membrane-bound lytic murein transglycosylase D 2570958..2572511 Aliivibrio salmonicida LFI1238 6987739 YP_002263758.1 CDS VSAL_I2404 NC_011312.1 2572870 2574357 R transposase complement(2572870..2574357) Aliivibrio salmonicida LFI1238 6988812 YP_002263759.1 CDS VSAL_I2405 NC_011312.1 2574429 2574776 R transposase complement(2574429..2574776) Aliivibrio salmonicida LFI1238 6987740 YP_002263760.1 CDS VSAL_I2406 NC_011312.1 2574773 2575087 R transposase complement(2574773..2575087) Aliivibrio salmonicida LFI1238 6987741 YP_002263761.1 CDS VSAL_I2407 NC_011312.1 2575504 2576358 R hypothetical protein complement(2575504..2576358) Aliivibrio salmonicida LFI1238 6987742 YP_002263762.1 CDS glnB NC_011312.1 2576424 2576762 R nitrogen regulatory protein P-II complement(2576424..2576762) Aliivibrio salmonicida LFI1238 6987743 YP_002263763.1 CDS VSAL_I2409 NC_011312.1 2576855 2577166 R cytochrome c-552 complement(2576855..2577166) Aliivibrio salmonicida LFI1238 6988594 YP_002263764.1 CDS tilS NC_011312.1 2577219 2578550 R tRNA(Ile)-lysidine synthase complement(2577219..2578550) Aliivibrio salmonicida LFI1238 6987744 YP_002263765.1 CDS accA NC_011312.1 2578658 2579617 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(2578658..2579617) Aliivibrio salmonicida LFI1238 6989298 YP_002263766.1 CDS dnaE NC_011312.1 2579669 2583148 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(2579669..2583148) Aliivibrio salmonicida LFI1238 6988209 YP_002263767.1 CDS rnhB NC_011312.1 2583148 2583771 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(2583148..2583771) Aliivibrio salmonicida LFI1238 6988413 YP_002263768.1 CDS lpxB NC_011312.1 2583776 2584927 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(2583776..2584927) Aliivibrio salmonicida LFI1238 6989138 YP_002263769.1 CDS lpxA NC_011312.1 2585004 2585792 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(2585004..2585792) Aliivibrio salmonicida LFI1238 6988758 YP_002263770.1 CDS fabZ NC_011312.1 2585795 2586274 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2585795..2586274) Aliivibrio salmonicida LFI1238 6988757 YP_002263771.1 CDS lpxD NC_011312.1 2586375 2587394 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(2586375..2587394) Aliivibrio salmonicida LFI1238 6988471 YP_002263772.1 CDS VSAL_I2418 NC_011312.1 2587403 2587918 R Similar to Yersinia pestis Chaperone protein skp precursor UniProt:P58607 (165 aa) fasta scores: E()=2e-16, 39.053% id in 169 aa; outer membrane protein complement(2587403..2587918) Aliivibrio salmonicida LFI1238 6988760 YP_002263773.1 CDS yaeT NC_011312.1 2587994 2590414 R part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT complement(2587994..2590414) Aliivibrio salmonicida LFI1238 6987745 YP_002263774.1 CDS ecfE NC_011312.1 2590443 2591801 R protease EcfE complement(2590443..2591801) Aliivibrio salmonicida LFI1238 6989423 YP_002263775.1 CDS dxr NC_011312.1 2591804 2593006 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(2591804..2593006) Aliivibrio salmonicida LFI1238 6988436 YP_002263776.1 CDS cdsA NC_011312.1 2593115 2593954 R phosphatidate cytidylyltransferase complement(2593115..2593954) Aliivibrio salmonicida LFI1238 6988434 YP_002263777.1 CDS uppS NC_011312.1 2593958 2594731 R undecaprenyl pyrophosphate synthetase complement(2593958..2594731) Aliivibrio salmonicida LFI1238 6988314 YP_002263778.1 CDS frr NC_011312.1 2594855 2595412 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2594855..2595412) Aliivibrio salmonicida LFI1238 6989359 YP_002263779.1 CDS pyrH NC_011312.1 2595447 2596178 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2595447..2596178) Aliivibrio salmonicida LFI1238 6988564 YP_002263780.1 CDS tsf NC_011312.1 2596349 2597197 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2596349..2597197) Aliivibrio salmonicida LFI1238 6989053 YP_002263781.1 CDS rpsB NC_011312.1 2597330 2598061 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2597330..2598061) Aliivibrio salmonicida LFI1238 6987746 YP_002263782.1 CDS VSAL_I2428 NC_011312.1 2598427 2599254 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 2598427..2599254 Aliivibrio salmonicida LFI1238 6989189 YP_002263783.1 CDS glnD NC_011312.1 2599448 2602099 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 2599448..2602099 Aliivibrio salmonicida LFI1238 6987747 YP_002263784.1 CDS VSAL_I2430 NC_011312.1 2602193 2603074 D transposase 2602193..2603074 Aliivibrio salmonicida LFI1238 6988596 YP_002263785.1 CDS VSAL_I2431 NC_011312.1 2603230 2603610 D hypothetical protein 2603230..2603610 Aliivibrio salmonicida LFI1238 6987748 YP_002263786.1 CDS secF NC_011312.1 2603684 2604634 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(2603684..2604634) Aliivibrio salmonicida LFI1238 6987749 YP_002263787.1 CDS secD NC_011312.1 2604648 2606504 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(2604648..2606504) Aliivibrio salmonicida LFI1238 6989235 YP_002263788.1 CDS yajC NC_011312.1 2606558 2606890 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(2606558..2606890) Aliivibrio salmonicida LFI1238 6989231 YP_002263789.1 CDS tgt NC_011312.1 2606984 2608111 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(2606984..2608111) Aliivibrio salmonicida LFI1238 6987750 YP_002263790.1 CDS queA NC_011312.1 2608304 2609356 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(2608304..2609356) Aliivibrio salmonicida LFI1238 6989280 YP_002263791.1 CDS VSAL_I2437 NC_011312.1 2609599 2610042 D Similar to N-terminal part of Bacillus subtilis Acetoin utilization protein AcuB UniProt:P39066 (214 aa) fasta scores: E()=1.1e-08, 30.986% id in 142 aa; hypothetical protein 2609599..2610042 Aliivibrio salmonicida LFI1238 6989058 YP_002263792.1 CDS aceA NC_011312.1 2610139 2611467 R isocitrate lyase complement(2610139..2611467) Aliivibrio salmonicida LFI1238 6987751 YP_002263793.1 CDS aceB NC_011312.1 2611482 2613086 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(2611482..2613086) Aliivibrio salmonicida LFI1238 6988213 YP_002263794.1 CDS VSAL_I2440 NC_011312.1 2613672 2614571 R Similar to Escherichia coli Hydrogen peroxide-inducible genes activator OxyR UniProt:P0ACQ4 (EMBL:J04553 (305 aa) fasta scores: E()=8.4e-29, 35.959% id in 292 aa; transcriptional regulator, hydrogen peroxide-inducible regulon activator complement(2613672..2614571) Aliivibrio salmonicida LFI1238 6988214 YP_002263795.1 CDS VSAL_I2441 NC_011312.1 2614720 2615328 D peroxidase/antioxidant 2614720..2615328 Aliivibrio salmonicida LFI1238 6987752 YP_002263796.1 CDS VSAL_I2442 NC_011312.1 2615595 2616338 D copper homeostasis protein CutC 2615595..2616338 Aliivibrio salmonicida LFI1238 6987753 YP_002263797.1 CDS VSAL_I2443 NC_011312.1 2616405 2616770 R hypothetical protein complement(2616405..2616770) Aliivibrio salmonicida LFI1238 6987754 YP_002263798.1 CDS VSAL_I2444 NC_011312.1 2616815 2617444 R accessory colonization factor precursor AcfA complement(2616815..2617444) Aliivibrio salmonicida LFI1238 6987755 YP_002263799.1 CDS VSAL_I2445 NC_011312.1 2617733 2618659 D Similar to Pseudomonas putida HTH-type transcriptional activator NahR UniProt:P10183 (300 aa) fasta scores: E()=2.9e-13, 27.213% id in 305 aa; LysR family transcriptional regulator 2617733..2618659 Aliivibrio salmonicida LFI1238 6987756 YP_002263800.1 CDS VSAL_I2446 NC_011312.1 2618823 2619452 D hypothetical protein 2618823..2619452 Aliivibrio salmonicida LFI1238 6987757 YP_002263801.1 CDS VSAL_I2448 NC_011312.1 2620160 2620582 D transposase 2620160..2620582 Aliivibrio salmonicida LFI1238 6987758 YP_002263802.1 CDS VSAL_I2449 NC_011312.1 2620600 2621166 D transposase 2620600..2621166 Aliivibrio salmonicida LFI1238 6987759 YP_002263803.1 CDS VSAL_I2450 NC_011312.1 2621279 2621854 R hypothetical protein complement(2621279..2621854) Aliivibrio salmonicida LFI1238 6987760 YP_002263804.1 CDS phoU NC_011312.1 2622007 2622705 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(2622007..2622705) Aliivibrio salmonicida LFI1238 6987761 YP_002263805.1 CDS pstB NC_011312.1 2622741 2623559 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(2622741..2623559) Aliivibrio salmonicida LFI1238 6988974 YP_002263806.1 CDS pstA NC_011312.1 2623564 2625093 R phosphate import protein, transmembrane component PstA complement(2623564..2625093) Aliivibrio salmonicida LFI1238 6989023 YP_002263807.1 CDS pstC NC_011312.1 2625104 2627311 R phosphate import protein, transmembrane component PstC complement(2625104..2627311) Aliivibrio salmonicida LFI1238 6989021 YP_002263808.1 CDS VSAL_I2455 NC_011312.1 2627406 2628395 R hypothetical protein complement(2627406..2628395) Aliivibrio salmonicida LFI1238 6989025 YP_002263809.1 CDS phoR NC_011312.1 2628402 2629700 R membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein complement(2628402..2629700) Aliivibrio salmonicida LFI1238 6987762 YP_002263810.1 CDS phoB NC_011312.1 2629731 2630423 R phosphate regulon transcriptional regulator PhoB complement(2629731..2630423) Aliivibrio salmonicida LFI1238 6988973 YP_002263811.1 CDS rdgC NC_011312.1 2630634 2631548 D Required for efficient pilin antigenic variation; recombination associated protein 2630634..2631548 Aliivibrio salmonicida LFI1238 6988972 YP_002263812.1 CDS VSAL_I2460 NC_011312.1 2632016 2632330 D transposase 2632016..2632330 Aliivibrio salmonicida LFI1238 6989073 YP_002263813.1 CDS VSAL_I2461 NC_011312.1 2632327 2632674 D transposase 2632327..2632674 Aliivibrio salmonicida LFI1238 6987763 YP_002263814.1 CDS VSAL_I2463 NC_011312.1 2635822 2637117 D Similar to Acinetobacter sp. Cis,cis-muconate transport protein MucK UniProt:P94131 (413 aa) fasta scores: E()=2.7e-07, 23.636% id in 385 aa; MFS transporter 2635822..2637117 Aliivibrio salmonicida LFI1238 6987765 YP_002263815.1 CDS VSAL_I2464 NC_011312.1 2637189 2638205 D hypothetical protein 2637189..2638205 Aliivibrio salmonicida LFI1238 6987766 YP_002263816.1 CDS VSAL_I2465 NC_011312.1 2638373 2639383 D Similar to Bacillus subtilis Ribose operon repressor RbsR UniProt:P36944 (326 aa) fasta scores: E()=4.1e-23, 33.333% id in 333 aa; LacI family transcriptional regulator 2638373..2639383 Aliivibrio salmonicida LFI1238 6987767 YP_002263817.1 CDS VSAL_I2466 NC_011312.1 2639534 2640922 D peptidase 2639534..2640922 Aliivibrio salmonicida LFI1238 6987768 YP_002263818.1 CDS fdx NC_011312.1 2640926 2641180 D ferredoxin 2640926..2641180 Aliivibrio salmonicida LFI1238 6987769 YP_002263819.1 CDS VSAL_I2469 NC_011312.1 2642123 2643004 D transposase 2642123..2643004 Aliivibrio salmonicida LFI1238 6987770 YP_002263820.1 CDS dnaJ NC_011312.1 2643549 2644691 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(2643549..2644691) Aliivibrio salmonicida LFI1238 6987771 YP_002263821.1 CDS dnaK NC_011312.1 2645010 2646911 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(2645010..2646911) Aliivibrio salmonicida LFI1238 6988416 YP_002263822.1 CDS VSAL_I2472 NC_011312.1 2647163 2648110 R hypothetical protein complement(2647163..2648110) Aliivibrio salmonicida LFI1238 6988418 YP_002263823.1 CDS grpE NC_011312.1 2648330 2648914 R protein GrpE (heat shock protein) complement(2648330..2648914) Aliivibrio salmonicida LFI1238 6987772 YP_002263824.1 CDS ppnK NC_011312.1 2649080 2649973 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2649080..2649973 Aliivibrio salmonicida LFI1238 6988627 YP_002263825.1 CDS recN NC_011312.1 2650071 2651768 D recombination and repair protein 2650071..2651768 Aliivibrio salmonicida LFI1238 6987773 YP_002263826.1 CDS VSAL_I2476 NC_011312.1 2652019 2652375 D lipoprotein, small protein A 2652019..2652375 Aliivibrio salmonicida LFI1238 6989082 YP_002263827.1 CDS VSAL_I2477 NC_011312.1 2652463 2652756 R hypothetical protein complement(2652463..2652756) Aliivibrio salmonicida LFI1238 6987774 YP_002263828.1 CDS VSAL_I2478 NC_011312.1 2652761 2653198 R hypothetical protein complement(2652761..2653198) Aliivibrio salmonicida LFI1238 6987775 YP_002263829.1 CDS smpB NC_011312.1 2653300 2653785 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2653300..2653785 Aliivibrio salmonicida LFI1238 6987776 YP_002263830.1 CDS int NC_011312.1 2654415 2655656 D integrase, phage family 2654415..2655656 Aliivibrio salmonicida LFI1238 6988163 YP_002263831.1 CDS VSAL_I2481 NC_011312.1 2655827 2656576 R phage protein complement(2655827..2656576) Aliivibrio salmonicida LFI1238 6988720 YP_002263832.1 CDS VSAL_I2482 NC_011312.1 2656578 2659508 R ABC transporter ATP-binding protein complement(2656578..2659508) Aliivibrio salmonicida LFI1238 6987777 YP_002263833.1 CDS VSAL_I2484 NC_011312.1 2660814 2661128 D transposase 2660814..2661128 Aliivibrio salmonicida LFI1238 6987778 YP_002263834.1 CDS VSAL_I2485 NC_011312.1 2661125 2661472 D transposase 2661125..2661472 Aliivibrio salmonicida LFI1238 6987779 YP_002263835.1 CDS VSAL_I2486 NC_011312.1 2661544 2663031 D transposase 2661544..2663031 Aliivibrio salmonicida LFI1238 6987780 YP_002263836.1 CDS VSAL_I2488 NC_011312.1 2665710 2666057 R transposase complement(2665710..2666057) Aliivibrio salmonicida LFI1238 6987782 YP_002263837.1 CDS VSAL_I2489 NC_011312.1 2666054 2666365 R transposase complement(2666054..2666365) Aliivibrio salmonicida LFI1238 6987783 YP_002263838.1 CDS pdxY NC_011312.1 2666559 2667428 R pyridoxamine kinase complement(2666559..2667428) Aliivibrio salmonicida LFI1238 6987784 YP_002263839.1 CDS cadA NC_011312.1 2667505 2669643 R lysine decarboxylase complement(2667505..2669643) Aliivibrio salmonicida LFI1238 6988956 YP_002263840.1 CDS cadB NC_011312.1 2669762 2671096 R antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter complement(2669762..2671096) Aliivibrio salmonicida LFI1238 6988296 YP_002263841.1 CDS VSAL_I2493 NC_011312.1 2671757 2673226 D sodium/alanine symporter 2671757..2673226 Aliivibrio salmonicida LFI1238 6988297 YP_002263842.1 CDS VSAL_I2494 NC_011312.1 2673304 2674932 R regulates the cadBA operon; DNA-binding transcriptional activator CadC complement(2673304..2674932) Aliivibrio salmonicida LFI1238 6987785 YP_002263843.1 CDS VSAL_I2495 NC_011312.1 2675480 2675896 D hypothetical protein 2675480..2675896 Aliivibrio salmonicida LFI1238 6987786 YP_002263844.1 CDS VSAL_I2496 NC_011312.1 2675962 2676399 R integral membrane protein complement(2675962..2676399) Aliivibrio salmonicida LFI1238 6987787 YP_002263845.1 CDS VSAL_I2497 NC_011312.1 2676409 2676828 R integral membrane protein complement(2676409..2676828) Aliivibrio salmonicida LFI1238 6987788 YP_002263846.1 CDS VSAL_I2498 NC_011312.1 2677139 2678059 D Similar to Yersinia enterocolitica Plasmid pYVe8081 YomA UniProt:Q93KR5 (291 aa) fasta scores: E()=2.3e-35, 44.170% id in 283 aa; integral membrane protein 2677139..2678059 Aliivibrio salmonicida LFI1238 6987789 YP_002263847.1 CDS metA NC_011312.1 2678218 2679156 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 2678218..2679156 Aliivibrio salmonicida LFI1238 6987790 YP_002263848.1 CDS dcuB NC_011312.1 2679390 2680733 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 2679390..2680733 Aliivibrio salmonicida LFI1238 6988787 YP_002263849.1 CDS VSAL_I2501 NC_011312.1 2680823 2682037 R Similar to Escherichia coli Inner membrane transport protein yeiJ UniProt:P33021 (416 aa) fasta scores: E()=2.1e-48, 43.750% id in 416 aa; nucleoside transport protein (nucleoside permease NupC) complement(2680823..2682037) Aliivibrio salmonicida LFI1238 6988397 YP_002263850.1 CDS VSAL_I2502 NC_011312.1 2682466 2683026 D membrane protein 2682466..2683026 Aliivibrio salmonicida LFI1238 6987791 YP_002263851.1 CDS VSAL_I2503 NC_011312.1 2683155 2684855 D Similar to Serratia marcescens Iron(III)-transport system permease protein SfuB UniProt:P21409 (527 aa) fasta scores: E()=4.8e-05, 23.715% id in 506 aa; ABC transporter permease 2683155..2684855 Aliivibrio salmonicida LFI1238 6987792 YP_002263852.1 CDS VSAL_I2504 NC_011312.1 2684869 2685462 D ABC transporter ATP-binding protein 2684869..2685462 Aliivibrio salmonicida LFI1238 6987793 YP_002263853.1 CDS VSAL_I2505 NC_011312.1 2685455 2686081 D Similar to Escherichia coli Inner membrane protein YnjF UniProt:P76226 (206 aa) fasta scores: E()=1.5e-40, 58.049% id in 205 aa; phosphatidyltransferase 2685455..2686081 Aliivibrio salmonicida LFI1238 6987794 YP_002263854.1 CDS rpoS NC_011312.1 2686176 2687141 R RNA polymerase sigma subunit RpoS (sigma-38) complement(2686176..2687141) Aliivibrio salmonicida LFI1238 6987795 YP_002263855.1 CDS VSAL_I2507 NC_011312.1 2687197 2688189 R lipoprotein complement(2687197..2688189) Aliivibrio salmonicida LFI1238 6989186 YP_002263856.1 CDS pcm NC_011312.1 2688196 2688822 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(2688196..2688822) Aliivibrio salmonicida LFI1238 6987796 YP_002263857.1 CDS surE NC_011312.1 2688822 2689586 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2688822..2689586) Aliivibrio salmonicida LFI1238 6988950 YP_002263858.1 CDS truD NC_011312.1 2689617 2690663 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(2689617..2690663) Aliivibrio salmonicida LFI1238 6989270 YP_002263859.1 CDS ispF NC_011312.1 2690678 2691157 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2690678..2691157) Aliivibrio salmonicida LFI1238 6989338 YP_002263860.1 CDS ispD NC_011312.1 2691154 2691873 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2691154..2691873) Aliivibrio salmonicida LFI1238 6988727 YP_002263861.1 CDS ftsB NC_011312.1 2691877 2692161 R cell division protein FtsB complement(2691877..2692161) Aliivibrio salmonicida LFI1238 6988725 YP_002263862.1 CDS eno NC_011312.1 2692343 2693641 R enolase complement(2692343..2693641) Aliivibrio salmonicida LFI1238 6988567 YP_002263863.1 CDS pyrG NC_011312.1 2693718 2695358 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2693718..2695358) Aliivibrio salmonicida LFI1238 6988442 YP_002263864.1 CDS VSAL_I2516 NC_011312.1 2695489 2696313 R hypothetical protein complement(2695489..2696313) Aliivibrio salmonicida LFI1238 6989052 YP_002263865.1 CDS flaF NC_011312.1 2696413 2697570 R structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin complement(2696413..2697570) Aliivibrio salmonicida LFI1238 6987797 YP_002263866.1 CDS relA NC_011312.1 2697759 2699996 R GTP pyrophosphokinase complement(2697759..2699996) Aliivibrio salmonicida LFI1238 6988507 YP_002263867.1 CDS rumA NC_011312.1 2700070 2701386 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(2700070..2701386) Aliivibrio salmonicida LFI1238 6989086 YP_002263868.1 CDS varS NC_011312.1 2701550 2704339 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 2701550..2704339 Aliivibrio salmonicida LFI1238 6989215 YP_002263869.1 CDS acpS NC_011312.1 2704391 2704771 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(2704391..2704771) Aliivibrio salmonicida LFI1238 6988202 YP_002263870.1 CDS pdxJ NC_011312.1 2704771 2705502 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2704771..2705502) Aliivibrio salmonicida LFI1238 6988220 YP_002263871.1 CDS recO NC_011312.1 2705499 2706215 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2705499..2706215) Aliivibrio salmonicida LFI1238 6988955 YP_002263872.1 CDS era NC_011312.1 2706343 2707308 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2706343..2707308) Aliivibrio salmonicida LFI1238 6989083 YP_002263873.1 CDS rnc NC_011312.1 2707308 2707979 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(2707308..2707979) Aliivibrio salmonicida LFI1238 6988456 YP_002263874.1 CDS lepB NC_011312.1 2707990 2708892 R signal peptidase I (leader peptidase I) complement(2707990..2708892) Aliivibrio salmonicida LFI1238 6989128 YP_002263875.1 CDS lepA NC_011312.1 2709013 2710806 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2709013..2710806) Aliivibrio salmonicida LFI1238 6988742 YP_002263876.1 CDS VSAL_I2528 NC_011312.1 2710896 2711381 R Similar to Escherichia coli Sigma-E factor regulatory protein RseC UniProt:P46187 (159 aa) fasta scores: E()=2.8e-09, 32.877% id in 146 aa; sigma-E factor regulatory protein RseC complement(2710896..2711381) Aliivibrio salmonicida LFI1238 6988741 YP_002263877.1 CDS rseB NC_011312.1 2711386 2712363 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(2711386..2712363) Aliivibrio salmonicida LFI1238 6987798 YP_002263878.1 CDS VSAL_I2530 NC_011312.1 2712364 2712981 R sigma-E factor negative regulatory protein complement(2712364..2712981) Aliivibrio salmonicida LFI1238 6987799 YP_002263879.1 CDS rpoE NC_011312.1 2713011 2713589 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(2713011..2713589) Aliivibrio salmonicida LFI1238 6987800 YP_002263880.1 CDS nadB NC_011312.1 2713911 2715527 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2713911..2715527 Aliivibrio salmonicida LFI1238 6989183 YP_002263881.1 CDS VSAL_I2533 NC_011312.1 2715627 2715998 R CDS contanins a rare Valine start codon (GTT); hypothetical protein complement(2715627..2715998) Aliivibrio salmonicida LFI1238 6988875 YP_002263882.1 CDS VSAL_I2534 NC_011312.1 2715994 2716254 R hypothetical protein complement(2715994..2716254) Aliivibrio salmonicida LFI1238 6987801 YP_002263883.1 CDS VSAL_I2535 NC_011312.1 2716433 2717389 D hypothetical protein 2716433..2717389 Aliivibrio salmonicida LFI1238 6987802 YP_002263884.1 CDS VSAL_I2536 NC_011312.1 2717851 2718054 D hypothetical protein 2717851..2718054 Aliivibrio salmonicida LFI1238 6987803 YP_002263885.1 CDS VSAL_I2537 NC_011312.1 2718141 2719346 R catalyzes the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone from 2-octaprenyl-6-methoxyphenol; 2-octaprenyl-6-methoxyphenol hydroxylase complement(2718141..2719346) Aliivibrio salmonicida LFI1238 6987804 YP_002263886.1 CDS ubiH NC_011312.1 2719349 2720548 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(2719349..2720548) Aliivibrio salmonicida LFI1238 6987805 YP_002263887.1 CDS VSAL_I2539 NC_011312.1 2720548 2721117 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(2720548..2721117) Aliivibrio salmonicida LFI1238 6989354 YP_002263888.1 CDS VSAL_I2540 NC_011312.1 2721355 2721696 D cell division protein ZapA 2721355..2721696 Aliivibrio salmonicida LFI1238 6987806 YP_002263889.1 CDS VSAL_I2541 NC_011312.1 2721911 2722492 D 5-formyltetrahydrofolate cyclo-ligase 2721911..2722492 Aliivibrio salmonicida LFI1238 6988164 YP_002263890.1 CDS rpiA NC_011312.1 2722637 2723293 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2722637..2723293 Aliivibrio salmonicida LFI1238 6987808 YP_002263891.1 CDS VSAL_I2543 NC_011312.1 2723481 2724362 D transposase 2723481..2724362 Aliivibrio salmonicida LFI1238 6989145 YP_002263892.1 CDS serA NC_011312.1 2724503 2725732 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2724503..2725732 Aliivibrio salmonicida LFI1238 6987809 YP_002263893.1 CDS VSAL_I2545 NC_011312.1 2725835 2726530 R hypothetical protein complement(2725835..2726530) Aliivibrio salmonicida LFI1238 6989239 YP_002263894.1 CDS mscS NC_011312.1 2726695 2727555 R small-conductance mechanosensitive channel complement(2726695..2727555) Aliivibrio salmonicida LFI1238 6987810 YP_002263895.1 CDS VSAL_I2547 NC_011312.1 2727812 2728591 R hypothetical protein complement(2727812..2728591) Aliivibrio salmonicida LFI1238 6988835 YP_002263896.1 CDS VSAL_I2548 NC_011312.1 2728705 2730138 R Similar to Escherichia coli transporter YaaJ UniProt:P30143 (476 aa) fasta scores: E()=1.4e-85, 51.392% id in 467 aa; amino-acid transporter complement(2728705..2730138) Aliivibrio salmonicida LFI1238 6987811 YP_002263897.1 CDS VSAL_I2549 NC_011312.1 2730866 2731054 D hypothetical protein 2730866..2731054 Aliivibrio salmonicida LFI1238 6987812 YP_002263898.1 CDS VSAL_I2550 NC_011312.1 2731097 2731627 R hemerythrin complement(2731097..2731627) Aliivibrio salmonicida LFI1238 6987813 YP_002263899.1 CDS ung NC_011312.1 2731716 2732390 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(2731716..2732390) Aliivibrio salmonicida LFI1238 6987814 YP_002263900.1 CDS nfo NC_011312.1 2732391 2733239 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(2732391..2733239) Aliivibrio salmonicida LFI1238 6989357 YP_002263901.1 CDS grcA NC_011312.1 2733601 2733978 D stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 2733601..2733978 Aliivibrio salmonicida LFI1238 6988894 YP_002263902.1 CDS thrC NC_011312.1 2734134 2735417 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(2734134..2735417) Aliivibrio salmonicida LFI1238 6988622 YP_002263903.1 CDS thrB NC_011312.1 2735414 2736370 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(2735414..2736370) Aliivibrio salmonicida LFI1238 6989294 YP_002263904.1 CDS thrA NC_011312.1 2736372 2738831 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(2736372..2738831) Aliivibrio salmonicida LFI1238 6989293 YP_002263905.1 CDS VSAL_I2557 NC_011312.1 2739226 2739702 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(2739226..2739702) Aliivibrio salmonicida LFI1238 6988165 YP_002263906.1 CDS arcA NC_011312.1 2740146 2740865 D two-component response regulator 2740146..2740865 Aliivibrio salmonicida LFI1238 6987815 YP_002263907.1 CDS VSAL_I2559 NC_011312.1 2740940 2741386 R lipoprotein complement(2740940..2741386) Aliivibrio salmonicida LFI1238 6988246 YP_002263908.1 CDS arcB NC_011312.1 2741396 2743762 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB complement(2741396..2743762) Aliivibrio salmonicida LFI1238 6987816 YP_002263909.1 CDS gltB NC_011312.1 2745319 2749866 D Similar to Synechocystis sp. Ferredoxin-dependent glutamate synthase 1 GltB UniProt:P55037 (1550 aa) fasta scores: E()=0, 54.714% id in 1506 aa; glutamate synthase, large subunit 2745319..2749866 Aliivibrio salmonicida LFI1238 6987817 YP_002263910.1 CDS gltD NC_011312.1 2749866 2751338 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 2749866..2751338 Aliivibrio salmonicida LFI1238 6988606 YP_002263911.1 CDS VSAL_I2564 NC_011312.1 2751503 2751934 D lipoprotein 2751503..2751934 Aliivibrio salmonicida LFI1238 6987818 YP_002263912.1 CDS mtnN NC_011312.1 2757664 2758359 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2757664..2758359 Aliivibrio salmonicida LFI1238 6988169 YP_002263913.1 CDS VSAL_I2566 NC_011312.1 2758425 2759378 D catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid; adenosylcobinamide-phosphate synthase 2758425..2759378 Aliivibrio salmonicida LFI1238 6988857 YP_002263914.1 CDS VSAL_I2567 NC_011312.1 2759421 2760032 D Similar to Escherichia coli Inner membrane protein YadS UniProt:P0AFP0 (207 aa) fasta scores: E()=3e-47, 65.686% id in 204 aa; hypothetical protein 2759421..2760032 Aliivibrio salmonicida LFI1238 6987820 YP_002263915.1 CDS VSAL_I2568 NC_011312.1 2760222 2761532 D membrane associated peptidase 2760222..2761532 Aliivibrio salmonicida LFI1238 6987821 YP_002263916.1 CDS VSAL_I2569 NC_011312.1 2761549 2764677 R Similar to Escherichia coli multidrug resistance protein MdtB UniProt:P76398 (1040 aa) blastp scores: E()=3e-49; integral membrane protein, multidrug resistance protein complement(2761549..2764677) Aliivibrio salmonicida LFI1238 6987822 YP_002263917.1 CDS VSAL_I2570 NC_011312.1 2764687 2765799 R Similar to Pseudomonas aeruginosa Multidrug resistance protein MexA (PDB 1T5E), evalue=4e-09 identity=(69, 326); hypothetical protein complement(2764687..2765799) Aliivibrio salmonicida LFI1238 6987823 YP_002263918.1 CDS VSAL_I2571 NC_011312.1 2765930 2766271 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(2765930..2766271) Aliivibrio salmonicida LFI1238 6987824 YP_002263919.1 CDS hemL NC_011312.1 2766507 2767802 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 2766507..2767802 Aliivibrio salmonicida LFI1238 6987825 YP_002263920.1 CDS VSAL_I2573 NC_011312.1 2768062 2769147 D Expression may be stress-induced; membrane protein 2768062..2769147 Aliivibrio salmonicida LFI1238 6988648 YP_002263921.1 CDS rsmC NC_011312.1 2769232 2770293 D ribosomal RNA small subunit methyltransferase C (16S rRNA m2G120 methyltransferase) 2769232..2770293 Aliivibrio salmonicida LFI1238 6987826 YP_002263922.1 CDS chiS NC_011312.1 2770458 2773841 D Similar to Endosymbiont of Riftia pachyptila Sensor protein RssA UniProt:O33541 (773 aa) fasta scores: E()=4e-31, 31.076% id in 502 aa; chitin degradation sensor protein 2770458..2773841 Aliivibrio salmonicida LFI1238 6989212 YP_002263923.1 CDS VSAL_I2577 NC_011312.1 2776248 2777234 D Similar to Bacillus subtilis Oligopeptide transport system permease protein OppB UniProt:P24138 (311 aa) blastp scores: E()=2e-38; ABC transporter permease 2776248..2777234 Aliivibrio salmonicida LFI1238 6987827 YP_002263924.1 CDS VSAL_I2578 NC_011312.1 2777237 2778262 D Similar to Bacillus subtilis Oligopeptide transport system permease protein AppC UniProt:P42063 (303 aa) blastp scores: E()=1e-31; ABC transoprter permease 2777237..2778262 Aliivibrio salmonicida LFI1238 6987828 YP_002263925.1 CDS VSAL_I2579 NC_011312.1 2778264 2779247 D Similar to Bacillus subtilis Dipeptide transport ATP-binding protein DppD UniProt:P26905 (335 aa) fasta scores: E()=2e-41, 42.722% id in 316 aa; ABC transporter ATP-binding protein 2778264..2779247 Aliivibrio salmonicida LFI1238 6987829 YP_002263926.1 CDS VSAL_I2580 NC_011312.1 2779271 2780266 D Similar to Bacillus subtilis Oligopeptide transport ATP-binding protein appF UniProt:P42065 (329 aa) fasta scores: E()=1.1e-34, 38.138% id in 333 aa; ABC transporter ATP-binding protein 2779271..2780266 Aliivibrio salmonicida LFI1238 6987830 YP_002263927.1 CDS VSAL_I2581 NC_011312.1 2780318 2782045 D chitobiase (exoglucosidase) 2780318..2782045 Aliivibrio salmonicida LFI1238 6987831 YP_002263928.1 CDS VSAL_I2582 NC_011312.1 2782038 2782913 D glucosamine kinase 2782038..2782913 Aliivibrio salmonicida LFI1238 6987832 YP_002263929.1 CDS exoI NC_011312.1 2782932 2784740 D beta-hexosaminidase (beta-N-acetylglucosaminidase) 2782932..2784740 Aliivibrio salmonicida LFI1238 6987833 YP_002263930.1 CDS chbP NC_011312.1 2784878 2787166 D chitobiose phosphorylase (glycosyl transferase) 2784878..2787166 Aliivibrio salmonicida LFI1238 6988462 YP_002263931.1 CDS VSAL_I2585 NC_011312.1 2787270 2788682 D phosphoglucomutase/phosphomannomutase 2787270..2788682 Aliivibrio salmonicida LFI1238 6988317 YP_002263932.1 CDS fbpC NC_011312.1 2788775 2789815 R iron(III) ABC transporter ATP-binding protein complement(2788775..2789815) Aliivibrio salmonicida LFI1238 6987834 YP_002263933.1 CDS fbpB NC_011312.1 2789815 2791446 R Similar to Pasteurella haemolytica transmembrane permease FbpB UniProt:Q9ZHY1 (525 aa) fasta scores: E()=7.9e-94, 53.565% id in 519 aa; iron(III) ABC transporter permease complement(2789815..2791446) Aliivibrio salmonicida LFI1238 6988484 YP_002263934.1 CDS fbpA NC_011312.1 2791514 2792527 R Expression may be regulated by Fur; iron(III) ABC transporter periplasmic iron-compound-binding protein complement(2791514..2792527) Aliivibrio salmonicida LFI1238 6988483 YP_002263935.1 CDS amtB NC_011312.1 2792706 2793935 R Similar to Pseudomonas stutzeri ammonium transporter Amtb2 UniProt:Q8RPB0 (417 aa) fasta scores: E()=1.9e-74, 64.649% id in 413 aa; ammonium transporter complement(2792706..2793935) Aliivibrio salmonicida LFI1238 6988482 YP_002263936.1 CDS glnB NC_011312.1 2793956 2794294 R nitrogen regulatory protein P-II complement(2793956..2794294) Aliivibrio salmonicida LFI1238 6988235 YP_002263937.1 CDS VSAL_I2591 NC_011312.1 2794462 2794830 R hypothetical protein complement(2794462..2794830) Aliivibrio salmonicida LFI1238 6988595 YP_002263938.1 CDS VSAL_I2592 NC_011312.1 2794974 2796119 D carbohydrate diacid regulator (sugar diacid regulator) 2794974..2796119 Aliivibrio salmonicida LFI1238 6987835 YP_002263939.1 CDS VSAL_I2593 NC_011312.1 2796247 2797512 D Similar to Escherichia coli High-affinity gluconate transporter GntP UniProt:P0AC94 (447 aa) fasta scores: E()=5.5e-06, 24.146% id in 439 aa; gluconate permease 2796247..2797512 Aliivibrio salmonicida LFI1238 6987836 YP_002263940.1 CDS glxK NC_011312.1 2797525 2798664 D glycerate kinase 2797525..2798664 Aliivibrio salmonicida LFI1238 6987837 YP_002263941.1 CDS acnB NC_011312.1 2798754 2801342 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(2798754..2801342) Aliivibrio salmonicida LFI1238 6988608 YP_002263942.1 CDS VSAL_I2597 NC_011312.1 2801617 2802498 R transposase complement(2801617..2802498) Aliivibrio salmonicida LFI1238 6987838 YP_002263943.1 CDS VSAL_I2598 NC_011312.1 2804916 2806403 R transposase complement(2804916..2806403) Aliivibrio salmonicida LFI1238 6987839 YP_002263944.1 CDS VSAL_I2599 NC_011312.1 2806475 2806822 R transposase complement(2806475..2806822) Aliivibrio salmonicida LFI1238 6987840 YP_002263945.1 CDS VSAL_I2600 NC_011312.1 2806819 2807133 R transposase complement(2806819..2807133) Aliivibrio salmonicida LFI1238 6987841 YP_002263946.1 CDS mrcB NC_011312.1 2815769 2818144 R penicillin-binding protein transpeptidase complement(2815769..2818144) Aliivibrio salmonicida LFI1238 6988179 YP_002263947.1 CDS hrpB NC_011312.1 2818175 2820640 R similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB complement(2818175..2820640) Aliivibrio salmonicida LFI1238 6988829 YP_002263948.1 CDS sfsA NC_011312.1 2820700 2821407 D sugar fermentation stimulation protein A 2820700..2821407 Aliivibrio salmonicida LFI1238 6988681 YP_002263949.1 CDS dksA NC_011312.1 2821552 2822022 D DnaK suppressor protein 2821552..2822022 Aliivibrio salmonicida LFI1238 6989245 YP_002263950.1 CDS pcnB NC_011312.1 2823105 2824430 D Similar to Escherichia coli Poly(A) polymerase PcnB UniProt:P0ABF1 (472 aa) fasta scores: E()=6.1e-99, 57.798% id in 436 aa. The CDS appears to be truncated at the N-terminus; poly(A) polymerase (plasmid copy number protein) 2823105..2824430 Aliivibrio salmonicida LFI1238 6987844 YP_002263951.1 CDS folK NC_011312.1 2824427 2824912 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2824427..2824912 Aliivibrio salmonicida LFI1238 6988951 YP_002263952.1 CDS panB NC_011312.1 2824935 2825729 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2824935..2825729 Aliivibrio salmonicida LFI1238 6988557 YP_002263953.1 CDS panC NC_011312.1 2825739 2826635 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2825739..2826635 Aliivibrio salmonicida LFI1238 6988943 YP_002263954.1 CDS VSAL_I2611 NC_011312.1 2826738 2828225 R transposase complement(2826738..2828225) Aliivibrio salmonicida LFI1238 6988944 YP_002263955.1 CDS VSAL_I2613 NC_011312.1 2828634 2828948 R transposase complement(2828634..2828948) Aliivibrio salmonicida LFI1238 6987846 YP_002263956.1 CDS VSAL_I2614 NC_011312.1 2829036 2829806 R Similar to Escherichia coli Inner membrane transport permease YadH UniProt:P0AFN6 (256 aa) fasta scores: E()=2.4e-55, 69.141% id in 256 aa; ABC transporter complement(2829036..2829806) Aliivibrio salmonicida LFI1238 6987847 YP_002263957.1 CDS VSAL_I2615 NC_011312.1 2829806 2830723 R Similar to Thermotoga maritima msb8 ABC transporter ATP-binding protein (TM0544) (PDB 1VPL), evalue=4e-36 identity=(82, 233); ABC transporter ATP-binding protein complement(2829806..2830723) Aliivibrio salmonicida LFI1238 6987848 YP_002263958.1 CDS can NC_011312.1 2830820 2831479 D carbonic anhydrase 2 2830820..2831479 Aliivibrio salmonicida LFI1238 6987849 YP_002263959.1 CDS VSAL_I2617 NC_011312.1 2831570 2831821 R hypothetical protein complement(2831570..2831821) Aliivibrio salmonicida LFI1238 6988301 YP_002263960.1 CDS hpt NC_011312.1 2832308 2832838 R hypoxanthine phosphoribosyltransferase complement(2832308..2832838) Aliivibrio salmonicida LFI1238 6987850 YP_002263961.1 CDS litR NC_011312.1 2833164 2833769 D LitR family transcriptional regulator 2833164..2833769 Aliivibrio salmonicida LFI1238 6988679 YP_002263962.1 CDS VSAL_I2622 NC_011312.1 2835691 2836005 R transposase complement(2835691..2836005) Aliivibrio salmonicida LFI1238 6987852 YP_002263963.1 CDS lpdA NC_011312.1 2836169 2837596 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(2836169..2837596) Aliivibrio salmonicida LFI1238 6987853 YP_002263964.1 CDS aceE NC_011312.1 2839473 2842136 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(2839473..2842136) Aliivibrio salmonicida LFI1238 6988216 YP_002263965.1 CDS pdhR NC_011312.1 2842192 2842962 R activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR complement(2842192..2842962) Aliivibrio salmonicida LFI1238 6988215 YP_002263966.1 CDS ampD NC_011312.1 2843249 2843800 R N-acetyl-anhydromuranmyl-L-alanine amidase complement(2843249..2843800) Aliivibrio salmonicida LFI1238 6988952 YP_002263967.1 CDS nadC NC_011312.1 2843902 2844801 D catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 2843902..2844801 Aliivibrio salmonicida LFI1238 6988234 YP_002263968.1 CDS pilA NC_011312.1 2845150 2845566 D type IV pilus subunit PilA 2845150..2845566 Aliivibrio salmonicida LFI1238 6988876 YP_002263969.1 CDS pilB NC_011312.1 2845569 2847260 D type IV pilus assembly protein PilB 2845569..2847260 Aliivibrio salmonicida LFI1238 6988976 YP_002263970.1 CDS pilD NC_011312.1 2848634 2849521 D type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD) 2848634..2849521 Aliivibrio salmonicida LFI1238 6988978 YP_002263971.1 CDS coaE NC_011312.1 2849518 2850141 D dephospho-CoA kinase (dephosphocoenzyme a kinase) 2849518..2850141 Aliivibrio salmonicida LFI1238 6988979 YP_002263972.1 CDS VSAL_I2634 NC_011312.1 2850150 2850896 D hypothetical protein 2850150..2850896 Aliivibrio salmonicida LFI1238 6988342 YP_002263973.1 CDS VSAL_I2635 NC_011312.1 2850904 2851113 D zinc-binding protein 2850904..2851113 Aliivibrio salmonicida LFI1238 6987854 YP_002263974.1 CDS mutT NC_011312.1 2851181 2851582 R mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) complement(2851181..2851582) Aliivibrio salmonicida LFI1238 6987855 YP_002263975.1 CDS VSAL_I2637 NC_011312.1 2851682 2854405 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(2851682..2854405) Aliivibrio salmonicida LFI1238 6988871 YP_002263976.1 CDS VSAL_I2638 NC_011312.1 2854719 2855186 D hypothetical protein 2854719..2855186 Aliivibrio salmonicida LFI1238 6987856 YP_002263977.1 CDS lpxC NC_011312.1 2855249 2856166 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(2855249..2856166) Aliivibrio salmonicida LFI1238 6987857 YP_002263978.1 CDS ftsZ NC_011312.1 2856272 2857507 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(2856272..2857507) Aliivibrio salmonicida LFI1238 6988759 YP_002263979.1 CDS ftsA NC_011312.1 2857540 2858802 R ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA complement(2857540..2858802) Aliivibrio salmonicida LFI1238 6988575 YP_002263980.1 CDS ftsQ NC_011312.1 2858804 2859574 R cell division protein FtsQ complement(2858804..2859574) Aliivibrio salmonicida LFI1238 6988566 YP_002263981.1 CDS murC NC_011312.1 2859781 2861244 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(2859781..2861244) Aliivibrio salmonicida LFI1238 6988571 YP_002263982.1 CDS murG NC_011312.1 2861263 2862327 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(2861263..2862327) Aliivibrio salmonicida LFI1238 6988860 YP_002263983.1 CDS ftsW NC_011312.1 2862311 2863513 R cell division protein FtsW complement(2862311..2863513) Aliivibrio salmonicida LFI1238 6988864 YP_002263984.1 CDS murD NC_011312.1 2863516 2864844 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(2863516..2864844) Aliivibrio salmonicida LFI1238 6988572 YP_002263985.1 CDS mraY NC_011312.1 2864846 2865928 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2864846..2865928) Aliivibrio salmonicida LFI1238 6988861 YP_002263986.1 CDS murF NC_011312.1 2865928 2867286 R UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase complement(2865928..2867286) Aliivibrio salmonicida LFI1238 6988827 YP_002263987.1 CDS murE NC_011312.1 2867283 2868764 R UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase complement(2867283..2868764) Aliivibrio salmonicida LFI1238 6988863 YP_002263988.1 CDS ftsI NC_011312.1 2868772 2870511 R peptidoglycan synthetase FtsI precursor (peptidoglycan glycosyltransferase 3) (penicillin-binding protein 3) complement(2868772..2870511) Aliivibrio salmonicida LFI1238 6988862 YP_002263989.1 CDS ftsL NC_011312.1 2870508 2870834 R cell division protein FtsL complement(2870508..2870834) Aliivibrio salmonicida LFI1238 6988569 YP_002263990.1 CDS mraW NC_011312.1 2870831 2871781 R S-adenosyl-methyltransferase MraW complement(2870831..2871781) Aliivibrio salmonicida LFI1238 6988570 YP_002263991.1 CDS VSAL_I2653 NC_011312.1 2872413 2873276 R Similar to Bacteroides thetaiotaomicron VPI-5482 S-adenosylmethionine-dependent methytransferase (PDB 1WYZ), evalue=6e-15 identity=(52, 204); tetrapyrrole methyltransferase complement(2872413..2873276) Aliivibrio salmonicida LFI1238 6988826 YP_002263992.1 CDS VSAL_I2654 NC_011312.1 2873413 2875224 D lipoprotein LppC 2873413..2875224 Aliivibrio salmonicida LFI1238 6987858 YP_002263993.1 CDS VSAL_I2655 NC_011312.1 2875205 2875576 D hypothetical protein 2875205..2875576 Aliivibrio salmonicida LFI1238 6987859 YP_002263994.1 CDS diaA NC_011312.1 2875580 2876170 D DnaA initiator-associating protein DiaA 2875580..2876170 Aliivibrio salmonicida LFI1238 6987860 YP_002263995.1 CDS VSAL_I2657 NC_011312.1 2876176 2876763 D lipoprotein 2876176..2876763 Aliivibrio salmonicida LFI1238 6988406 YP_002263996.1 CDS sspB NC_011312.1 2876810 2877265 R ClpXP protease specificity-enhancing factor complement(2876810..2877265) Aliivibrio salmonicida LFI1238 6987861 YP_002263997.1 CDS sspA NC_011312.1 2877265 2877930 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(2877265..2877930) Aliivibrio salmonicida LFI1238 6989261 YP_002263998.1 CDS VSAL_I2660 NC_011312.1 2878087 2878824 R Similar to Bradyrhizobium japonicum Cytochrome b/c1 FbcH UniProt:P51131 (687 aa) blastp scores: E()=2e-11; ubiquinol--cytochrome c reductase, cytochrome C1 complement(2878087..2878824) Aliivibrio salmonicida LFI1238 6989260 YP_002263999.1 CDS petB NC_011312.1 2878821 2880089 R ubiquinol--cytochrome c reductase, cytochrome B complement(2878821..2880089) Aliivibrio salmonicida LFI1238 6987862 YP_002264000.1 CDS VSAL_I2662 NC_011312.1 2880089 2880697 R ubiquinol-cytochrome c reductase iron-sulfur subunit (rieske iron-sulfur protein) complement(2880089..2880697) Aliivibrio salmonicida LFI1238 6988960 YP_002264001.1 CDS rpsI NC_011312.1 2881079 2881471 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2881079..2881471) Aliivibrio salmonicida LFI1238 6987863 YP_002264002.1 CDS rplM NC_011312.1 2881487 2881915 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2881487..2881915) Aliivibrio salmonicida LFI1238 6989196 YP_002264003.1 CDS VSAL_I2665 NC_011312.1 2882194 2883300 R hypothetical protein complement(2882194..2883300) Aliivibrio salmonicida LFI1238 6989156 YP_002264004.1 CDS VSAL_I2666 NC_011312.1 2883425 2883880 D cytochrome D ubiquinol oxidase subunit III 2883425..2883880 Aliivibrio salmonicida LFI1238 6987864 YP_002264005.1 CDS VSAL_I2667 NC_011312.1 2883961 2885328 D serine protease 2883961..2885328 Aliivibrio salmonicida LFI1238 6987865 YP_002264006.1 CDS VSAL_I2668 NC_011312.1 2885461 2886525 D serine protease 2885461..2886525 Aliivibrio salmonicida LFI1238 6987866 YP_002264007.1 CDS parC NC_011312.1 2886649 2888919 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(2886649..2888919) Aliivibrio salmonicida LFI1238 6987867 YP_002264008.1 CDS parE NC_011312.1 2888923 2890803 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(2888923..2890803) Aliivibrio salmonicida LFI1238 6988946 YP_002264009.1 CDS VSAL_I2671 NC_011312.1 2890947 2891531 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA complement(2890947..2891531) Aliivibrio salmonicida LFI1238 6988947 YP_002264010.1 CDS VSAL_I2672 NC_011312.1 2891533 2892357 R Similar to Escherichia coli Protein icc UniProt:P0AEW4 (275 aa) fasta scores: E()=1.1e-56, 52.490% id in 261 aa; cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(2891533..2892357) Aliivibrio salmonicida LFI1238 6987868 YP_002264011.1 CDS VSAL_I2673 NC_011312.1 2892381 2892812 R hypothetical protein complement(2892381..2892812) Aliivibrio salmonicida LFI1238 6987869 YP_002264012.1 CDS nudF NC_011312.1 2892805 2893452 R ADP-ribose pyrophosphatase complement(2892805..2893452) Aliivibrio salmonicida LFI1238 6987870 YP_002264013.1 CDS tolC NC_011312.1 2893685 2895010 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 2893685..2895010 Aliivibrio salmonicida LFI1238 6988923 YP_002264014.1 CDS hldE NC_011312.1 2895086 2896516 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(2895086..2896516) Aliivibrio salmonicida LFI1238 6989305 YP_002264015.1 CDS glnE NC_011312.1 2896686 2899526 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(2896686..2899526) Aliivibrio salmonicida LFI1238 6988671 YP_002264016.1 CDS VSAL_I2678 NC_011312.1 2899652 2901253 R methyl-accepting chemotaxis protein complement(2899652..2901253) Aliivibrio salmonicida LFI1238 6988597 YP_002264017.1 CDS VSAL_I2679 NC_011312.1 2901363 2902124 D ion transport protein 2901363..2902124 Aliivibrio salmonicida LFI1238 6987871 YP_002264018.1 CDS VSAL_I2680 NC_011312.1 2902179 2903696 R hypothetical protein complement(2902179..2903696) Aliivibrio salmonicida LFI1238 6987872 YP_002264019.1 CDS VSAL_I2681 NC_011312.1 2903883 2904563 D hypothetical protein 2903883..2904563 Aliivibrio salmonicida LFI1238 6987873 YP_002264020.1 CDS VSAL_I2682 NC_011312.1 2904591 2905877 D phosphate transporter 2904591..2905877 Aliivibrio salmonicida LFI1238 6987874 YP_002264021.1 CDS VSAL_I2683 NC_011312.1 2906052 2906663 D hypothetical protein 2906052..2906663 Aliivibrio salmonicida LFI1238 6987875 YP_002264022.1 CDS VSAL_I2684 NC_011312.1 2906687 2908174 R transposase complement(2906687..2908174) Aliivibrio salmonicida LFI1238 6987876 YP_002264023.1 CDS VSAL_I2685 NC_011312.1 2908246 2908593 R transposase complement(2908246..2908593) Aliivibrio salmonicida LFI1238 6987877 YP_002264024.1 CDS VSAL_I2686 NC_011312.1 2908590 2908901 R transposase complement(2908590..2908901) Aliivibrio salmonicida LFI1238 6987878 YP_002264025.1 CDS VSAL_I2687 NC_011312.1 2909078 2909779 R hypothetical protein complement(2909078..2909779) Aliivibrio salmonicida LFI1238 6987879 YP_002264026.1 CDS exeA NC_011312.1 2909780 2911339 R general secretion pathway protein A complement(2909780..2911339) Aliivibrio salmonicida LFI1238 6987880 YP_002264027.1 CDS cca NC_011312.1 2911481 2912704 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 2911481..2912704 Aliivibrio salmonicida LFI1238 6988459 YP_002264028.1 CDS VSAL_I2690 NC_011312.1 2912770 2913573 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(2912770..2913573) Aliivibrio salmonicida LFI1238 6988304 YP_002264029.1 CDS VSAL_I2691 NC_011312.1 2913582 2914070 R Similar to Haemophilus influenzae 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK UniProt:P43777 (160 aa) fasta scores: E()=8.2e-09, 35.948% id in 153 aa; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(2913582..2914070) Aliivibrio salmonicida LFI1238 6987881 YP_002264030.1 CDS folB NC_011312.1 2914067 2914420 R dihydroneopterin aldolase complement(2914067..2914420) Aliivibrio salmonicida LFI1238 6987882 YP_002264031.1 CDS VSAL_I2693 NC_011312.1 2914566 2915147 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 2914566..2915147 Aliivibrio salmonicida LFI1238 6988553 YP_002264032.1 CDS gcp NC_011312.1 2915221 2916237 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(2915221..2916237) Aliivibrio salmonicida LFI1238 6987883 YP_002264033.1 CDS VSAL_I2695 NC_011312.1 2916710 2917153 D hypothetical protein 2916710..2917153 Aliivibrio salmonicida LFI1238 6988585 YP_002264034.1 CDS dnaG NC_011312.1 2917267 2919027 D synthesizes RNA primers at the replication forks; DNA primase 2917267..2919027 Aliivibrio salmonicida LFI1238 6987884 YP_002264035.1 CDS rpoD NC_011312.1 2919125 2920957 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 2919125..2920957 Aliivibrio salmonicida LFI1238 6988414 YP_002264036.1 CDS VSAL_I2699 NC_011312.1 2922389 2923933 D Similar to Bacillus subtilis Long-chain-fatty-acid--CoA ligase LcfA UniProt:P94547 (560 aa) fasta scores: E()=1.9e-47, 34.594% id in 529 aa; AMP-binding enzyme, long chain fatty acid Co-A ligase, acetyl-CoA synthetase 2922389..2923933 Aliivibrio salmonicida LFI1238 6987885 YP_002264037.1 CDS VSAL_I2700 NC_011312.1 2924023 2924424 D membrane protein 2924023..2924424 Aliivibrio salmonicida LFI1238 6987886 YP_002264038.1 CDS pykF NC_011312.1 2924806 2926218 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2924806..2926218 Aliivibrio salmonicida LFI1238 6987887 YP_002264039.1 CDS VSAL_I2702 NC_011312.1 2926447 2927106 D GntR family transcriptional regulator 2926447..2927106 Aliivibrio salmonicida LFI1238 6989047 YP_002264040.1 CDS VSAL_I2703 NC_011312.1 2927161 2927322 R hypothetical protein complement(2927161..2927322) Aliivibrio salmonicida LFI1238 6987888 YP_002264041.1 CDS VSAL_I2704 NC_011312.1 2927417 2929306 R membrane associated GGDEF protein complement(2927417..2929306) Aliivibrio salmonicida LFI1238 6987889 YP_002264042.1 CDS ilvH NC_011312.1 2929412 2929906 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(2929412..2929906) Aliivibrio salmonicida LFI1238 6987890 YP_002264043.1 CDS ilvI NC_011312.1 2929906 2931627 R acetolactate synthase 3 catalytic subunit complement(2929906..2931627) Aliivibrio salmonicida LFI1238 6988710 YP_002264044.1 CDS VSAL_I2707 NC_011312.1 2931788 2933275 R transposase complement(2931788..2933275) Aliivibrio salmonicida LFI1238 6988711 YP_002264045.1 CDS VSAL_I2708 NC_011312.1 2933347 2933694 R transposase complement(2933347..2933694) Aliivibrio salmonicida LFI1238 6987891 YP_002264046.1 CDS VSAL_I2709 NC_011312.1 2933691 2934005 R transposase complement(2933691..2934005) Aliivibrio salmonicida LFI1238 6987892 YP_002264047.1 CDS argHA NC_011312.1 2934250 2936124 D catalyzes the formation of arginine from (N-L-arginino)succinate and the formation of N-acetylglutamate from glutamate and acetyl-CoA; bifunctional argininosuccinate lyase/N-acetylglutamate synthase 2934250..2936124 Aliivibrio salmonicida LFI1238 6987893 YP_002264048.1 CDS VSAL_I2711 NC_011312.1 2936277 2936540 R hypothetical protein complement(2936277..2936540) Aliivibrio salmonicida LFI1238 6988254 YP_002264049.1 CDS VSAL_I2712 NC_011312.1 2936668 2938134 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(2936668..2938134) Aliivibrio salmonicida LFI1238 6987894 YP_002264050.1 CDS VSAL_I2713 NC_011312.1 2938224 2938952 R hybrid peroxiredoxin (thioredoxin reductase) complement(2938224..2938952) Aliivibrio salmonicida LFI1238 6987895 YP_002264051.1 CDS oxyR NC_011312.1 2939132 2940040 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 2939132..2940040 Aliivibrio salmonicida LFI1238 6987896 YP_002264052.1 CDS mrcA NC_011312.1 2940107 2942605 R penicillin-binding protein 1A complement(2940107..2942605) Aliivibrio salmonicida LFI1238 6988940 YP_002264053.1 CDS pilM NC_011312.1 2942744 2943742 D Similar to Myxococcus xanthus dk 1622 PilM UniProt:Q306N6 (366 aa) fasta scores: E()=1.3e-10, 24.085% id in 328 aa; fimbrial assembly protein PilM 2942744..2943742 Aliivibrio salmonicida LFI1238 6988828 YP_002264054.1 CDS pilN NC_011312.1 2943727 2944296 D Similar to Pseudomonas aeruginosa Type 4 fimbrial biogenesis protein PilN UniProt:Q51352 (198 aa) fasta scores: E()=1e-09, 26.452% id in 155 aa; fimbrial assembly protein PilN 2943727..2944296 Aliivibrio salmonicida LFI1238 6988980 YP_002264055.1 CDS pilO NC_011312.1 2944289 2944870 D Similar to Pseudomonas fluorescens Type IV pilus biogenesis protein PilO UniProt:Q4KJJ2 (207 aa) fasta scores: E()=6.3e-17, 35.106% id in 188 aa; fimbrial assembly protein PilO 2944289..2944870 Aliivibrio salmonicida LFI1238 6988981 YP_002264056.1 CDS pilP NC_011312.1 2944863 2945381 D Similar to Pseudomonas syringae Pilus expression protein PilP UniProt:Q52542 (175 aa) fasta scores: E()=7.2e-08, 28.481% id in 158 aa; fimbrial assembly protein PilP 2944863..2945381 Aliivibrio salmonicida LFI1238 6988982 YP_002264057.1 CDS VSAL_I2721 NC_011312.1 2946774 2947655 R transposase complement(2946774..2947655) Aliivibrio salmonicida LFI1238 6988984 YP_002264058.1 CDS aroK NC_011312.1 2948361 2948879 D type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 2948361..2948879 Aliivibrio salmonicida LFI1238 6987897 YP_002264059.1 CDS aroB NC_011312.1 2948918 2950006 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 2948918..2950006 Aliivibrio salmonicida LFI1238 6988264 YP_002264060.1 CDS VSAL_I2724 NC_011312.1 2950010 2951527 D Similar to Escherichia coli Protein DamX UniProt:P11557 (428 aa) fasta scores: E()=0.004, 23.109% id in 238 aa; cell division protein 2950010..2951527 Aliivibrio salmonicida LFI1238 6988259 YP_002264061.1 CDS dam NC_011312.1 2951599 2952429 D DNA adenine methylase 2951599..2952429 Aliivibrio salmonicida LFI1238 6987898 YP_002264062.1 CDS rpe NC_011312.1 2952552 2953229 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 2952552..2953229 Aliivibrio salmonicida LFI1238 6988387 YP_002264063.1 CDS gph NC_011312.1 2953235 2953918 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 2953235..2953918 Aliivibrio salmonicida LFI1238 6989143 YP_002264064.1 CDS trpS NC_011312.1 2954038 2955054 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2954038..2955054 Aliivibrio salmonicida LFI1238 6988617 YP_002264065.1 CDS trpG NC_011312.1 2955151 2955729 D aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 2955151..2955729 Aliivibrio salmonicida LFI1238 6989334 YP_002264066.1 CDS VSAL_I2730 NC_011312.1 2955955 2956269 D transposase 2955955..2956269 Aliivibrio salmonicida LFI1238 6989332 YP_002264067.1 CDS VSAL_I2731 NC_011312.1 2956266 2956613 D transposase 2956266..2956613 Aliivibrio salmonicida LFI1238 6987899 YP_002264068.1 CDS VSAL_I2732 NC_011312.1 2956685 2958172 D transposase 2956685..2958172 Aliivibrio salmonicida LFI1238 6987900 YP_002264069.1 CDS argD NC_011312.1 2958360 2959574 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 2958360..2959574 Aliivibrio salmonicida LFI1238 6987901 YP_002264070.1 CDS astA NC_011312.1 2959736 2960755 D arginine N-succinyltransferase 2959736..2960755 Aliivibrio salmonicida LFI1238 6988267 YP_002264071.1 CDS astD NC_011312.1 2960768 2962225 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 2960768..2962225 Aliivibrio salmonicida LFI1238 6988275 YP_002264072.1 CDS VSAL_I2736 NC_011312.1 2962238 2963032 D hypothetical protein 2962238..2963032 Aliivibrio salmonicida LFI1238 6988276 YP_002264073.1 CDS crp NC_011312.1 2963117 2963749 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(2963117..2963749) Aliivibrio salmonicida LFI1238 6987902 YP_002264074.1 CDS VSAL_I2738 NC_011312.1 2963995 2964396 D OsmC-like protein 2963995..2964396 Aliivibrio salmonicida LFI1238 6988349 YP_002264075.1 CDS hslU NC_011312.1 2964469 2965803 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(2964469..2965803) Aliivibrio salmonicida LFI1238 6987903 YP_002264076.1 CDS hslV NC_011312.1 2965816 2966346 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(2965816..2966346) Aliivibrio salmonicida LFI1238 6988686 YP_002264077.1 CDS VSAL_I2741 NC_011312.1 2966525 2967094 R Similar to Escherichia coli Divisome protein FtsN (PDB 1UTA), evalue=2e-06 identity=(22, 67); cell division protein FtsN complement(2966525..2967094) Aliivibrio salmonicida LFI1238 6988687 YP_002264078.1 CDS cytR NC_011312.1 2967266 2968273 R negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR complement(2967266..2968273) Aliivibrio salmonicida LFI1238 6987904 YP_002264079.1 CDS priA NC_011312.1 2968477 2970678 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(2968477..2970678) Aliivibrio salmonicida LFI1238 6988384 YP_002264080.1 CDS rpmE NC_011312.1 2970934 2971152 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2970934..2971152 Aliivibrio salmonicida LFI1238 6989006 YP_002264081.1 CDS maeB NC_011312.1 2971385 2972632 D NADP-dependent malic enzyme 2971385..2972632 Aliivibrio salmonicida LFI1238 6989173 YP_002264082.1 CDS metJ NC_011312.1 2972973 2973293 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(2972973..2973293) Aliivibrio salmonicida LFI1238 6988774 YP_002264083.1 CDS metB NC_011312.1 2973481 2974647 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 2973481..2974647 Aliivibrio salmonicida LFI1238 6988796 YP_002264084.1 CDS metL NC_011312.1 2974647 2977067 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 2974647..2977067 Aliivibrio salmonicida LFI1238 6988788 YP_002264085.1 CDS leuO NC_011312.1 2977409 2978383 D activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 2977409..2978383 Aliivibrio salmonicida LFI1238 6988798 YP_002264086.1 CDS VSAL_I2750 NC_011312.1 2978631 2980466 D AMP-binding protein 2978631..2980466 Aliivibrio salmonicida LFI1238 6988747 YP_002264087.1 CDS VSAL_I2751 NC_011312.1 2980853 2981167 D transposase 2980853..2981167 Aliivibrio salmonicida LFI1238 6987905 YP_002264088.1 CDS VSAL_I2752 NC_011312.1 2981164 2981511 D transposase 2981164..2981511 Aliivibrio salmonicida LFI1238 6987906 YP_002264089.1 CDS VSAL_I2753 NC_011312.1 2981583 2983070 D transposase 2981583..2983070 Aliivibrio salmonicida LFI1238 6987907 YP_002264090.1 CDS ppc NC_011312.1 2983188 2985818 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(2983188..2985818) Aliivibrio salmonicida LFI1238 6987908 YP_002264091.1 CDS argE NC_011312.1 2985996 2987132 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(2985996..2987132) Aliivibrio salmonicida LFI1238 6988999 YP_002264092.1 CDS argC NC_011312.1 2987339 2988343 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 2987339..2988343 Aliivibrio salmonicida LFI1238 6988251 YP_002264093.1 CDS argB NC_011312.1 2988347 2989138 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 2988347..2989138 Aliivibrio salmonicida LFI1238 6988250 YP_002264094.1 CDS argG NC_011312.1 2989206 2990417 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 2989206..2990417 Aliivibrio salmonicida LFI1238 6988249 YP_002264095.1 CDS VSAL_I2759 NC_011312.1 2990544 2992031 R transposase complement(2990544..2992031) Aliivibrio salmonicida LFI1238 6988252 YP_002264096.1 CDS VSAL_I2760 NC_011312.1 2992103 2992450 R transposase complement(2992103..2992450) Aliivibrio salmonicida LFI1238 6987909 YP_002264097.1 CDS VSAL_I2761 NC_011312.1 2992447 2992761 R transposase complement(2992447..2992761) Aliivibrio salmonicida LFI1238 6987910 YP_002264098.1 CDS metF NC_011312.1 2992910 2993806 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(2992910..2993806) Aliivibrio salmonicida LFI1238 6987911 YP_002264099.1 CDS rplI NC_011312.1 2994101 2994550 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2994101..2994550) Aliivibrio salmonicida LFI1238 6988792 YP_002264100.1 CDS rpsR NC_011312.1 2994591 2994818 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(2994591..2994818) Aliivibrio salmonicida LFI1238 6989152 YP_002264101.1 CDS priB NC_011312.1 2994834 2995136 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(2994834..2995136) Aliivibrio salmonicida LFI1238 6989205 YP_002264102.1 CDS rpsF NC_011312.1 2995145 2995525 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2995145..2995525) Aliivibrio salmonicida LFI1238 6989007 YP_002264103.1 CDS rlmB NC_011312.1 2995758 2996501 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(2995758..2996501) Aliivibrio salmonicida LFI1238 6989193 YP_002264104.1 CDS rnr NC_011312.1 2996572 2999073 R ribonuclease R complement(2996572..2999073) Aliivibrio salmonicida LFI1238 6989107 YP_002264105.1 CDS VSAL_I2769 NC_011312.1 2999153 2999578 R negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR complement(2999153..2999578) Aliivibrio salmonicida LFI1238 6989140 YP_002264106.1 CDS hmp NC_011312.1 2999713 3000897 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2999713..3000897 Aliivibrio salmonicida LFI1238 6987912 YP_002264107.1 CDS motX NC_011312.1 3000998 3001630 R sodium-type polar flagellar protein MotX complement(3000998..3001630) Aliivibrio salmonicida LFI1238 6988674 YP_002264108.1 CDS purA NC_011312.1 3001857 3003173 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3001857..3003173) Aliivibrio salmonicida LFI1238 6988823 YP_002264109.1 CDS VSAL_I2773 NC_011312.1 3003352 3003537 R hypothetical protein complement(3003352..3003537) Aliivibrio salmonicida LFI1238 6989034 YP_002264110.1 CDS hflC NC_011312.1 3003625 3004509 R HflC protein complement(3003625..3004509) Aliivibrio salmonicida LFI1238 6987913 YP_002264111.1 CDS hflK NC_011312.1 3004512 3005735 R HflK protein complement(3004512..3005735) Aliivibrio salmonicida LFI1238 6988654 YP_002264112.1 CDS hflX NC_011312.1 3005754 3007073 R involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX complement(3005754..3007073) Aliivibrio salmonicida LFI1238 6988655 YP_002264113.1 CDS hfq NC_011312.1 3007118 3007384 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(3007118..3007384) Aliivibrio salmonicida LFI1238 6988656 YP_002264114.1 CDS miaA NC_011312.1 3007479 3008420 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(3007479..3008420) Aliivibrio salmonicida LFI1238 6988657 YP_002264115.1 CDS mutL NC_011312.1 3008413 3010371 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(3008413..3010371) Aliivibrio salmonicida LFI1238 6988803 YP_002264116.1 CDS amiB NC_011312.1 3010386 3012125 R N-acetylmuramoyl-L-alanine amidase complement(3010386..3012125) Aliivibrio salmonicida LFI1238 6988867 YP_002264117.1 CDS VSAL_I2781 NC_011312.1 3012119 3012583 R hypothetical protein complement(3012119..3012583) Aliivibrio salmonicida LFI1238 6988232 YP_002264118.1 CDS VSAL_I2782 NC_011312.1 3012804 3013922 D ferredoxin, 4Fe-4S binding protein 3012804..3013922 Aliivibrio salmonicida LFI1238 6987914 YP_002264119.1 CDS orn NC_011312.1 3015920 3016465 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(3015920..3016465) Aliivibrio salmonicida LFI1238 6988190 YP_002264120.1 CDS VSAL_I2784 NC_011312.1 3016564 3017619 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3016564..3017619 Aliivibrio salmonicida LFI1238 6988938 YP_002264121.1 CDS psd NC_011312.1 3017678 3018541 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3017678..3018541 Aliivibrio salmonicida LFI1238 6987916 YP_002264122.1 CDS VSAL_I2786 NC_011312.1 3018652 3019614 D Possible alternative translational start site after codon 23; integral membrane protein 3018652..3019614 Aliivibrio salmonicida LFI1238 6989018 YP_002264123.1 CDS VSAL_I2787 NC_011312.1 3019655 3020641 R lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase complement(3019655..3020641) Aliivibrio salmonicida LFI1238 6987917 YP_002264124.1 CDS VSAL_I2788 NC_011312.1 3020995 3022848 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 3020995..3022848 Aliivibrio salmonicida LFI1238 6987918 YP_002264125.1 CDS frdB NC_011312.1 3022848 3023591 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 3022848..3023591 Aliivibrio salmonicida LFI1238 6987919 YP_002264126.1 CDS frdC NC_011312.1 3023594 3023977 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 3023594..3023977 Aliivibrio salmonicida LFI1238 6988560 YP_002264127.1 CDS frdD NC_011312.1 3023989 3024351 D in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 3023989..3024351 Aliivibrio salmonicida LFI1238 6988561 YP_002264128.1 CDS efp NC_011312.1 3024543 3025109 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(3024543..3025109) Aliivibrio salmonicida LFI1238 6988562 YP_002264129.1 CDS VSAL_I2793 NC_011312.1 3025142 3026164 D Similar to Clostridium subterminale L-lysine 2,3-aminomutase KamA UniProt:Q9XBQ8 (416 aa) fasta scores: E()=3.9e-30, 33.746% id in 323 aa; hypothetical protein 3025142..3026164 Aliivibrio salmonicida LFI1238 6988438 YP_002264130.1 CDS pfkA NC_011312.1 3026252 3027214 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(3026252..3027214) Aliivibrio salmonicida LFI1238 6987920 YP_002264131.1 CDS fieF NC_011312.1 3027433 3028338 R member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F complement(3027433..3028338) Aliivibrio salmonicida LFI1238 6988961 YP_002264132.1 CDS VSAL_I2796 NC_011312.1 3028498 3029004 R Similar to Escherichia coli Periplasmic protein CpxP UniProt:P0AE85 (166 aa) fasta scores: E()=5.9e-05, 36.842% id in 114 aa; periplasmic protein CpxP complement(3028498..3029004) Aliivibrio salmonicida LFI1238 6988496 YP_002264133.1 CDS cpxR NC_011312.1 3029199 3029882 D CpxR family transcriptional regulator 3029199..3029882 Aliivibrio salmonicida LFI1238 6987921 YP_002264134.1 CDS cpxA NC_011312.1 3029888 3031276 D part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 3029888..3031276 Aliivibrio salmonicida LFI1238 6988348 YP_002264135.1 CDS yibK NC_011312.1 3031372 3031851 D Similar to Escherichia coli Hypothetical tRNA/rRNA methyltransferase YibK UniProt:P0AGJ7 (157 aa) fasta scores: E()=2.7e-36, 60.377% id in 159 aa; tRNA/rRNA methyltransferase 3031372..3031851 Aliivibrio salmonicida LFI1238 6988347 YP_002264136.1 CDS cysE NC_011312.1 3031953 3032774 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(3031953..3032774) Aliivibrio salmonicida LFI1238 6989437 YP_002264137.1 CDS gpsA NC_011312.1 3032793 3033824 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3032793..3033824) Aliivibrio salmonicida LFI1238 6988374 YP_002264138.1 CDS secB NC_011312.1 3033990 3034472 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be to SecA; preprotein translocase subunit SecB complement(3033990..3034472) Aliivibrio salmonicida LFI1238 6988620 YP_002264139.1 CDS VSAL_I2803 NC_011312.1 3034600 3035037 R hypothetical protein complement(3034600..3035037) Aliivibrio salmonicida LFI1238 6989230 YP_002264140.1 CDS VSAL_I2804 NC_011312.1 3035259 3036404 D peptidase 3035259..3036404 Aliivibrio salmonicida LFI1238 6987922 YP_002264141.1 CDS fxsA NC_011312.1 3036485 3036988 R F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein complement(3036485..3036988) Aliivibrio salmonicida LFI1238 6987923 YP_002264142.1 CDS aspA NC_011312.1 3037403 3038851 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 3037403..3038851 Aliivibrio salmonicida LFI1238 6988579 YP_002264143.1 CDS VSAL_I2807 NC_011312.1 3039055 3039369 D transposase 3039055..3039369 Aliivibrio salmonicida LFI1238 6988272 YP_002264144.1 CDS VSAL_I2808 NC_011312.1 3039366 3039713 D transposase 3039366..3039713 Aliivibrio salmonicida LFI1238 6987924 YP_002264145.1 CDS dipZ NC_011312.1 3042841 3044715 D two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 3042841..3044715 Aliivibrio salmonicida LFI1238 6988394 YP_002264146.1 CDS nagB NC_011312.1 3044823 3045623 D catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 3044823..3045623 Aliivibrio salmonicida LFI1238 6988426 YP_002264147.1 CDS mtlA NC_011312.1 3046322 3048274 D PTS system mannitol-specific transporter subunit EIICBA 3046322..3048274 Aliivibrio salmonicida LFI1238 6988878 YP_002264148.1 CDS mtlD NC_011312.1 3048353 3049501 D mannitol-1-phosphate 5-dehydrogenase 3048353..3049501 Aliivibrio salmonicida LFI1238 6988854 YP_002264149.1 CDS mtlR NC_011312.1 3049551 3050081 D Acts as a repressor of the mtlAD operon; mannitol repressor protein 3049551..3050081 Aliivibrio salmonicida LFI1238 6988855 YP_002264150.1 CDS VSAL_I2816 NC_011312.1 3050102 3051352 R MFS transporter complement(3050102..3051352) Aliivibrio salmonicida LFI1238 6988856 YP_002264151.1 CDS VSAL_I2817 NC_011312.1 3051377 3051874 R hypothetical protein complement(3051377..3051874) Aliivibrio salmonicida LFI1238 6987927 YP_002264152.1 CDS gap NC_011312.1 3051892 3052893 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(3051892..3052893) Aliivibrio salmonicida LFI1238 6987928 YP_002264153.1 CDS arsR NC_011312.1 3052910 3053239 R Expression may be regulated by Fur; ArsR family transcriptional regulator complement(3052910..3053239) Aliivibrio salmonicida LFI1238 6988584 YP_002264154.1 CDS VSAL_I2820 NC_011312.1 3053485 3054483 D hypothetical protein 3053485..3054483 Aliivibrio salmonicida LFI1238 6988266 YP_002264155.1 CDS ndh NC_011312.1 3054683 3055912 D NADH dehydrogenase 3054683..3055912 Aliivibrio salmonicida LFI1238 6987929 YP_002264156.1 CDS glmS NC_011312.1 3055981 3057813 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(3055981..3057813) Aliivibrio salmonicida LFI1238 6988887 YP_002264157.1 CDS VSAL_I2823 NC_011312.1 3057933 3058697 R Similar to Escherichia coli Glucitol operon repressor SrlR UniProt:P15082 (257 aa) fasta scores: E()=4.4e-28, 44.130% id in 247 aa; glucitol operon repressor complement(3057933..3058697) Aliivibrio salmonicida LFI1238 6988591 YP_002264158.1 CDS VSAL_I2824 NC_011312.1 3058924 3059553 D LuxR family transcriptional regulator 3058924..3059553 Aliivibrio salmonicida LFI1238 6987930 YP_002264159.1 CDS VSAL_I2825 NC_011312.1 3059641 3060264 D integral membrane protein, MarC family 3059641..3060264 Aliivibrio salmonicida LFI1238 6987931 YP_002264160.1 CDS VSAL_I2826 NC_011312.1 3060371 3061696 R transposase complement(3060371..3061696) Aliivibrio salmonicida LFI1238 6987932 YP_002264161.1 CDS VSAL_I2827 NC_011312.1 3061810 3062151 D Similar to Vibrio fischeri Hypothetical protein UniProt:Q5E275 (88 aa) fasta scores: E()=2.9e-27, 86.364% id in 88 aa. Possible alternative translational start site after codon 25; hypothetical protein 3061810..3062151 Aliivibrio salmonicida LFI1238 6987933 YP_002264162.1 CDS VSAL_I2828 NC_011312.1 3062162 3063865 D sodium/solute symporter 3062162..3063865 Aliivibrio salmonicida LFI1238 6987934 YP_002264163.1 CDS VSAL_I2829 NC_011312.1 3063960 3067406 R membrane associated response regulator, histidine kinase complement(3063960..3067406) Aliivibrio salmonicida LFI1238 6987935 YP_002264164.1 CDS VSAL_I2830 NC_011312.1 3067539 3068720 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter complement(3067539..3068720) Aliivibrio salmonicida LFI1238 6987936 YP_002264165.1 CDS VSAL_I2831 NC_011312.1 3068890 3070722 D nucleotidyltransferases 3068890..3070722 Aliivibrio salmonicida LFI1238 6987937 YP_002264166.1 CDS VSAL_I2832 NC_011312.1 3070724 3071356 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 3070724..3071356 Aliivibrio salmonicida LFI1238 6987938 YP_002264167.1 CDS acs NC_011312.1 3071562 3073511 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 3071562..3073511 Aliivibrio salmonicida LFI1238 6987939 YP_002264168.1 CDS aroQ NC_011312.1 3073970 3074419 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3073970..3074419 Aliivibrio salmonicida LFI1238 6988221 YP_002264169.1 CDS accB NC_011312.1 3074450 3074905 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3074450..3074905 Aliivibrio salmonicida LFI1238 6988265 YP_002264170.1 CDS accC NC_011312.1 3074918 3076261 D biotin carboxylase (acetyl-CoA carboxylase subunit A) 3074918..3076261 Aliivibrio salmonicida LFI1238 6988210 YP_002264171.1 CDS prmA NC_011312.1 3076378 3077262 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3076378..3077262 Aliivibrio salmonicida LFI1238 6988211 YP_002264172.1 CDS dusB NC_011312.1 3077458 3078426 D tRNA-dihydrouridine synthase B 3077458..3078426 Aliivibrio salmonicida LFI1238 6989010 YP_002264173.1 CDS fis NC_011312.1 3078449 3078745 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3078449..3078745 Aliivibrio salmonicida LFI1238 6988432 YP_002264174.1 CDS VSAL_I2840 NC_011312.1 3078885 3079229 R hypothetical protein complement(3078885..3079229) Aliivibrio salmonicida LFI1238 6988497 YP_002264175.1 CDS zntR NC_011312.1 3079278 3079697 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; transcriptional regulator complement(3079278..3079697) Aliivibrio salmonicida LFI1238 6987940 YP_002264176.1 CDS purH NC_011312.1 3079982 3081574 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3079982..3081574 Aliivibrio salmonicida LFI1238 6987941 YP_002264177.1 CDS purD NC_011312.1 3081756 3083048 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 3081756..3083048 Aliivibrio salmonicida LFI1238 6989039 YP_002264178.1 CDS VSAL_I2844 NC_011312.1 3083164 3084489 D transposase 3083164..3084489 Aliivibrio salmonicida LFI1238 6989036 YP_002264179.1 CDS VSAL_I2845 NC_011312.1 3084535 3085239 R lipoprotein complement(3084535..3085239) Aliivibrio salmonicida LFI1238 6987942 YP_002264180.1 CDS hupA NC_011312.1 3085279 3085551 R DNA-binding protein HU-alpha complement(3085279..3085551) Aliivibrio salmonicida LFI1238 6987943 YP_002264181.1 CDS VSAL_I2847 NC_011312.1 3085774 3086835 D Expression may be regulated by Fur; modulator of ion transport 3085774..3086835 Aliivibrio salmonicida LFI1238 6988690 YP_002264182.1 CDS VSAL_I2848 NC_011312.1 3086932 3087525 R hypothetical protein complement(3086932..3087525) Aliivibrio salmonicida LFI1238 6987944 YP_002264183.1 CDS VSAL_I2849 NC_011312.1 3087597 3088511 D D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3087597..3088511 Aliivibrio salmonicida LFI1238 6987945 YP_002264184.1 CDS VSAL_I2850 NC_011312.1 3088552 3089007 R hypothetical protein complement(3088552..3089007) Aliivibrio salmonicida LFI1238 6987946 YP_002264185.1 CDS hemE NC_011312.1 3089204 3090271 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(3089204..3090271) Aliivibrio salmonicida LFI1238 6987947 YP_002264186.1 CDS VSAL_I2853 NC_011312.1 3091004 3092197 D transposase 3091004..3092197 Aliivibrio salmonicida LFI1238 6988921 YP_002264187.1 CDS VSAL_I2854 NC_011312.1 3092825 3093334 D binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 3092825..3093334 Aliivibrio salmonicida LFI1238 6987948 YP_002264188.1 CDS csgF NC_011312.1 3094233 3094634 R Similar to Escherichia coli Curli production assembly/transport component CsgF precursor UniProt:P0AE98 (138 aa) fasta scores: E()=1.4e-13, 39.516% id in 124 aa; assembly/transport component in curli production, CsgF precursor complement(3094233..3094634) Aliivibrio salmonicida LFI1238 6987949 YP_002264189.1 CDS csgE NC_011312.1 3094644 3095105 R Similar to Salmonella typhimurium Curli production assembly/transport component CsgE precursor UniProt:P0A200 (131 aa) fasta scores: E()=0.00033, 34.862% id in 109 aa; assembly/transport component in curli production, CsgE precursor complement(3094644..3095105) Aliivibrio salmonicida LFI1238 6988354 YP_002264190.1 CDS csgD NC_011312.1 3095102 3095749 R Similar to Escherichia coli CsgAB operon transcriptional regulatory protein UniProt:P52106 (216 aa) fasta scores: E()=8.1e-12, 38.217% id in 157 aa; CsgAB operon transcriptional regulatory protein complement(3095102..3095749) Aliivibrio salmonicida LFI1238 6988353 YP_002264191.1 CDS VSAL_I2860 NC_011312.1 3096149 3096715 R transposase complement(3096149..3096715) Aliivibrio salmonicida LFI1238 6988352 YP_002264192.1 CDS VSAL_I2861 NC_011312.1 3096733 3097155 R transposase complement(3096733..3097155) Aliivibrio salmonicida LFI1238 6987950 YP_002264193.1 CDS VSAL_I2863 NC_011312.1 3097957 3098838 R transposase complement(3097957..3098838) Aliivibrio salmonicida LFI1238 6987952 YP_002264194.1 CDS csgA NC_011312.1 3099392 3100336 D curlin associated precursor, CsgA like 3099392..3100336 Aliivibrio salmonicida LFI1238 6987953 YP_002264195.1 CDS rpoC NC_011312.1 3100411 3104616 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(3100411..3104616) Aliivibrio salmonicida LFI1238 6988351 YP_002264196.1 CDS rpoB NC_011312.1 3104688 3108716 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(3104688..3108716) Aliivibrio salmonicida LFI1238 6989181 YP_002264197.1 CDS rplL NC_011312.1 3108948 3109313 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(3108948..3109313) Aliivibrio salmonicida LFI1238 6989180 YP_002264198.1 CDS rplJ NC_011312.1 3109369 3109863 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(3109369..3109863) Aliivibrio salmonicida LFI1238 6989155 YP_002264199.1 CDS rplA NC_011312.1 3110109 3110813 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(3110109..3110813) Aliivibrio salmonicida LFI1238 6989153 YP_002264200.1 CDS rplK NC_011312.1 3110818 3111246 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(3110818..3111246) Aliivibrio salmonicida LFI1238 6989146 YP_002264201.1 CDS nusG NC_011312.1 3111366 3111911 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(3111366..3111911) Aliivibrio salmonicida LFI1238 6989154 YP_002264202.1 CDS secE NC_011312.1 3111924 3112301 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(3111924..3112301) Aliivibrio salmonicida LFI1238 6988927 YP_002264204.1 CDS VSAL_I2874 NC_011312.1 3114297 3115178 D transposase 3114297..3115178 Aliivibrio salmonicida LFI1238 6988193 YP_002264205.1 CDS coaA NC_011312.1 3115312 3116235 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 3115312..3116235 Aliivibrio salmonicida LFI1238 6987954 YP_002264206.1 CDS birA NC_011312.1 3116236 3117195 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(3116236..3117195) Aliivibrio salmonicida LFI1238 6988337 YP_002264207.1 CDS murB NC_011312.1 3117192 3118232 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(3117192..3118232) Aliivibrio salmonicida LFI1238 6988292 YP_002264208.1 CDS VSAL_I2878 NC_011312.1 3118304 3118732 D hypothetical protein 3118304..3118732 Aliivibrio salmonicida LFI1238 6988859 YP_002264209.1 CDS pssA NC_011312.1 3118812 3120164 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 3118812..3120164 Aliivibrio salmonicida LFI1238 6987955 YP_002264210.1 CDS VSAL_I2880 NC_011312.1 3120327 3120641 D transposase 3120327..3120641 Aliivibrio salmonicida LFI1238 6989019 YP_002264211.1 CDS VSAL_I2881 NC_011312.1 3120638 3120985 D transposase 3120638..3120985 Aliivibrio salmonicida LFI1238 6987956 YP_002264212.1 CDS VSAL_I2882 NC_011312.1 3121057 3122544 D transposase 3121057..3122544 Aliivibrio salmonicida LFI1238 6987957 YP_002264213.1 CDS VSAL_I2883 NC_011312.1 3128367 3128852 D RNA binding protein 3128367..3128852 Aliivibrio salmonicida LFI1238 6988197 YP_002264214.1 CDS murI NC_011312.1 3128806 3129603 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(3128806..3129603) Aliivibrio salmonicida LFI1238 6987959 YP_002264215.1 CDS VSAL_I2885 NC_011312.1 3129664 3130335 R hypothetical protein complement(3129664..3130335) Aliivibrio salmonicida LFI1238 6988865 YP_002264216.1 CDS VSAL_I2886 NC_011312.1 3130386 3132242 R Similar to Salmonella typhimurium Vitamin B12 transporter BtuB precursor UniProt:P37409 (614 aa) fasta scores: E()=3.2e-56, 34.615% id in 624 aa; outer membrane associated TonB dependent receptor complement(3130386..3132242) Aliivibrio salmonicida LFI1238 6987960 YP_002264217.1 CDS trmA NC_011312.1 3132667 3133773 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 3132667..3133773 Aliivibrio salmonicida LFI1238 6988198 YP_002264218.1 CDS VSAL_I2888 NC_011312.1 3133846 3134220 R Similar to Escherichia coli Inner membrane protein YijD UniProt:P0AF40 (119 aa) fasta scores: E()=4.7e-11, 35.897% id in 117 aa; hypothetical protein complement(3133846..3134220) Aliivibrio salmonicida LFI1238 6989320 YP_002264219.1 CDS VSAL_I2889 NC_011312.1 3134265 3134963 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(3134265..3134963) Aliivibrio salmonicida LFI1238 6987962 YP_002264220.1 CDS sthA NC_011312.1 3135177 3136592 D catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 3135177..3136592 Aliivibrio salmonicida LFI1238 6987963 YP_002264221.1 CDS vcmD NC_011312.1 3136681 3138012 R multidrug efflux pump complement(3136681..3138012) Aliivibrio salmonicida LFI1238 6989262 YP_002264222.1 CDS VSAL_I2892 NC_011312.1 3138095 3138907 R Expression may be regulated by Fur; hypothetical protein complement(3138095..3138907) Aliivibrio salmonicida LFI1238 6989403 YP_002264223.1 CDS lexA NC_011312.1 3138998 3139621 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(3138998..3139621) Aliivibrio salmonicida LFI1238 6987964 YP_002264224.1 CDS plsB NC_011312.1 3139863 3142286 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 3139863..3142286 Aliivibrio salmonicida LFI1238 6988749 YP_002264225.1 CDS ubiA NC_011312.1 3142377 3143234 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(3142377..3143234) Aliivibrio salmonicida LFI1238 6988987 YP_002264226.1 CDS ubiC NC_011312.1 3143231 3143803 R Similar to Escherichia coli Chorismate--pyruvate lyase UbiC UniProt:P26602 (164 aa) fasta scores: E()=4.3e-12, 33.803% id in 142 aa; chorismate--pyruvate lyase complement(3143231..3143803) Aliivibrio salmonicida LFI1238 6989347 YP_002264227.1 CDS VSAL_I2897 NC_011312.1 3143925 3144335 D flagellar basal body-associated protein FliL-like protein 3143925..3144335 Aliivibrio salmonicida LFI1238 6989349 YP_002264228.1 CDS VSAL_I2898 NC_011312.1 3144389 3145228 R integral membrane protein complement(3144389..3145228) Aliivibrio salmonicida LFI1238 6987965 YP_002264229.1 CDS glpE NC_011312.1 3145236 3145559 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase complement(3145236..3145559) Aliivibrio salmonicida LFI1238 6987966 YP_002264230.1 CDS rpoH NC_011312.1 3145988 3146848 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(3145988..3146848) Aliivibrio salmonicida LFI1238 6988600 YP_002264231.1 CDS ftsX NC_011312.1 3147076 3148029 R cell division protein FtsX complement(3147076..3148029) Aliivibrio salmonicida LFI1238 6989184 YP_002264232.1 CDS ftsE NC_011312.1 3148022 3148690 R cell division ATP-binding protein FtsE complement(3148022..3148690) Aliivibrio salmonicida LFI1238 6988573 YP_002264233.1 CDS ftsY NC_011312.1 3148694 3149926 R cell division protein FtsY complement(3148694..3149926) Aliivibrio salmonicida LFI1238 6988568 YP_002264234.1 CDS VSAL_I2904 NC_011312.1 3149997 3150605 D hypothetical protein 3149997..3150605 Aliivibrio salmonicida LFI1238 6988574 YP_002264235.1 CDS VSAL_I2905 NC_011312.1 3150606 3150878 D hypothetical protein 3150606..3150878 Aliivibrio salmonicida LFI1238 6987967 YP_002264236.1 CDS VSAL_I2907 NC_011312.1 3151679 3151921 R hypothetical protein complement(3151679..3151921) Aliivibrio salmonicida LFI1238 6987969 YP_002264237.1 CDS VSAL_I2908 NC_011312.1 3152793 3153158 R hypothetical protein complement(3152793..3153158) Aliivibrio salmonicida LFI1238 6987970 YP_002264238.1 CDS VSAL_I2909 NC_011312.1 3153432 3153764 D hypothetical protein 3153432..3153764 Aliivibrio salmonicida LFI1238 6987971 YP_002264239.1 CDS recG NC_011312.1 3153779 3155860 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3153779..3155860 Aliivibrio salmonicida LFI1238 6987972 YP_002264240.1 CDS VSAL_I2911 NC_011312.1 3155939 3156523 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein complement(3155939..3156523) Aliivibrio salmonicida LFI1238 6989080 YP_002264241.1 CDS cysQ NC_011312.1 3156642 3157460 R protein CysQ complement(3156642..3157460) Aliivibrio salmonicida LFI1238 6987973 YP_002264242.1 CDS nudE NC_011312.1 3157466 3158017 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(3157466..3158017) Aliivibrio salmonicida LFI1238 6988381 YP_002264243.1 CDS exeN NC_011312.1 3158027 3158788 R general secretion pathway protein N complement(3158027..3158788) Aliivibrio salmonicida LFI1238 6988922 YP_002264244.1 CDS epsM NC_011312.1 3158785 3159276 R general secretion pathway protein M complement(3158785..3159276) Aliivibrio salmonicida LFI1238 6988460 YP_002264245.1 CDS epsL NC_011312.1 3159276 3160511 R CDS contanins a rare Leucine start codon (CTG); general secretion pathway protein L complement(3159276..3160511) Aliivibrio salmonicida LFI1238 6988455 YP_002264246.1 CDS epsK NC_011312.1 3160504 3161523 R general secretion pathway protein K complement(3160504..3161523) Aliivibrio salmonicida LFI1238 6988454 YP_002264247.1 CDS epsJ NC_011312.1 3161538 3162185 R general secretion pathway protein J complement(3161538..3162185) Aliivibrio salmonicida LFI1238 6988453 YP_002264248.1 CDS epsI NC_011312.1 3162190 3162567 R general secretion pathway protein I complement(3162190..3162567) Aliivibrio salmonicida LFI1238 6988452 YP_002264249.1 CDS epsH NC_011312.1 3162557 3163153 R general secretion pathway protein H complement(3162557..3163153) Aliivibrio salmonicida LFI1238 6988451 YP_002264250.1 CDS epsG NC_011312.1 3163185 3163634 R general secretion pathway protein G complement(3163185..3163634) Aliivibrio salmonicida LFI1238 6988450 YP_002264251.1 CDS epsF NC_011312.1 3163698 3164915 R general secretion pathway protein F complement(3163698..3164915) Aliivibrio salmonicida LFI1238 6988449 YP_002264252.1 CDS epsE NC_011312.1 3164916 3166415 R general secretion pathway protein E complement(3164916..3166415) Aliivibrio salmonicida LFI1238 6988448 YP_002264253.1 CDS epsD NC_011312.1 3166415 3168442 R general secretion pathway protein D complement(3166415..3168442) Aliivibrio salmonicida LFI1238 6988447 YP_002264254.1 CDS epsC NC_011312.1 3168486 3169397 R general secretion pathway protein C complement(3168486..3169397) Aliivibrio salmonicida LFI1238 6988446 YP_002264255.1 CDS hslR NC_011312.1 3169675 3170076 D heat shock protein 15 3169675..3170076 Aliivibrio salmonicida LFI1238 6988445 YP_002264256.1 CDS hslO NC_011312.1 3170167 3171042 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 3170167..3171042 Aliivibrio salmonicida LFI1238 6988685 YP_002264257.1 CDS pckA NC_011312.1 3171402 3173027 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3171402..3173027 Aliivibrio salmonicida LFI1238 6988684 YP_002264258.1 CDS VSAL_I2929 NC_011312.1 3173232 3175214 D hypothetical protein 3173232..3175214 Aliivibrio salmonicida LFI1238 6988949 YP_002264259.1 CDS VSAL_I2930 NC_011312.1 3175273 3176493 R signaling protein complement(3175273..3176493) Aliivibrio salmonicida LFI1238 6987974 YP_002264260.1 CDS VSAL_I2931 NC_011312.1 3176743 3177711 D lysophospholipase L2 LypA 3176743..3177711 Aliivibrio salmonicida LFI1238 6987975 YP_002264261.1 CDS VSAL_I2932 NC_011312.1 3177835 3178632 D hypothetical protein 3177835..3178632 Aliivibrio salmonicida LFI1238 6987976 YP_002264262.1 CDS VSAL_I2934 NC_011312.1 3180276 3180623 R transposase complement(3180276..3180623) Aliivibrio salmonicida LFI1238 6987978 YP_002264263.1 CDS VSAL_I2935 NC_011312.1 3180620 3180934 R transposase complement(3180620..3180934) Aliivibrio salmonicida LFI1238 6987979 YP_002264264.1 CDS VSAL_I2936 NC_011312.1 3181638 3182537 R acyltransferase complement(3181638..3182537) Aliivibrio salmonicida LFI1238 6987980 YP_002264265.1 CDS dtd NC_011312.1 3182875 3183309 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(3182875..3183309) Aliivibrio salmonicida LFI1238 6987981 YP_002264266.1 CDS rbn NC_011312.1 3183281 3184213 R RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN complement(3183281..3184213) Aliivibrio salmonicida LFI1238 6988430 YP_002264267.1 CDS VSAL_I2939 NC_011312.1 3184346 3186175 R Similar to Escherichia coli GTP-binding protein TypA/BipA (Tyrosine phosphorylated protein A) UniProt:P32132 (607 aa) fasta scores: E()=1.6e-162, 74.503% id in 604 aa. Expression may be stress-induced; elongation factor Tu, GTP binding domain complement(3184346..3186175) Aliivibrio salmonicida LFI1238 6989066 YP_002264268.1 CDS glnA NC_011312.1 3186733 3188142 D forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 3186733..3188142 Aliivibrio salmonicida LFI1238 6987982 YP_002264269.1 CDS VSAL_I2941 NC_011312.1 3188568 3188882 D transposase 3188568..3188882 Aliivibrio salmonicida LFI1238 6988593 YP_002264270.1 CDS VSAL_I2942 NC_011312.1 3188879 3189226 D transposase 3188879..3189226 Aliivibrio salmonicida LFI1238 6987983 YP_002264271.1 CDS VSAL_I2943 NC_011312.1 3189298 3190785 D transposase 3189298..3190785 Aliivibrio salmonicida LFI1238 6987984 YP_002264272.1 CDS asnC NC_011312.1 3190919 3191380 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(3190919..3191380) Aliivibrio salmonicida LFI1238 6987985 YP_002264273.1 CDS VSAL_I2945 NC_011312.1 3191536 3192318 D hypothetical protein 3191536..3192318 Aliivibrio salmonicida LFI1238 6988270 YP_002264274.1 CDS uspA NC_011312.1 3192315 3192740 R universal stress protein A complement(3192315..3192740) Aliivibrio salmonicida LFI1238 6987986 YP_002264275.1 CDS ftnA NC_011312.1 3192947 3193474 D ferritin-1 3192947..3193474 Aliivibrio salmonicida LFI1238 6989360 YP_002264276.1 CDS uspB NC_011312.1 3193585 3193923 D ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 3193585..3193923 Aliivibrio salmonicida LFI1238 6988565 YP_002264277.1 CDS VSAL_I2949 NC_011312.1 3193951 3195156 D FAD dependent oxidoreductase 3193951..3195156 Aliivibrio salmonicida LFI1238 6989361 YP_002264278.1 CDS VSAL_I2951 NC_011312.1 3197135 3197449 D transposase 3197135..3197449 Aliivibrio salmonicida LFI1238 6987987 YP_002264279.1 CDS VSAL_I2952 NC_011312.1 3197446 3197793 D transposase 3197446..3197793 Aliivibrio salmonicida LFI1238 6987988 YP_002264280.1 CDS VSAL_I2953 NC_011312.1 3197865 3199352 D transposase 3197865..3199352 Aliivibrio salmonicida LFI1238 6987989 YP_002264281.1 CDS VSAL_I2954 NC_011312.1 3200094 3200681 R hypothetical protein complement(3200094..3200681) Aliivibrio salmonicida LFI1238 6987990 YP_002264282.1 CDS VSAL_I2955 NC_011312.1 3200681 3201700 R lipoprotein complement(3200681..3201700) Aliivibrio salmonicida LFI1238 6987991 YP_002264283.1 CDS eda NC_011312.1 3201855 3202490 D KHG/KDPG aldolase 3201855..3202490 Aliivibrio salmonicida LFI1238 6987992 YP_002264284.1 CDS VSAL_I2959 NC_011312.1 3204396 3204743 R transposase complement(3204396..3204743) Aliivibrio salmonicida LFI1238 6987994 YP_002264285.1 CDS VSAL_I2960 NC_011312.1 3204740 3205054 R transposase complement(3204740..3205054) Aliivibrio salmonicida LFI1238 6987995 YP_002264286.1 CDS ibpA NC_011312.1 3205351 3205785 D small heat shock protein 3205351..3205785 Aliivibrio salmonicida LFI1238 6987996 YP_002264287.1 CDS VSAL_I2962 NC_011312.1 3205841 3207166 R transposase complement(3205841..3207166) Aliivibrio salmonicida LFI1238 6988698 YP_002264288.1 CDS avtA NC_011312.1 3207539 3208786 R transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase complement(3207539..3208786) Aliivibrio salmonicida LFI1238 6987997 YP_002264289.1 CDS glyQ NC_011312.1 3209005 3209937 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 3209005..3209937 Aliivibrio salmonicida LFI1238 6988286 YP_002264290.1 CDS glyS NC_011312.1 3209940 3212006 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 3209940..3212006 Aliivibrio salmonicida LFI1238 6988610 YP_002264291.1 CDS malS NC_011312.1 3212151 3213815 D periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase 3212151..3213815 Aliivibrio salmonicida LFI1238 6988611 YP_002264292.1 CDS VSAL_I2967 NC_011312.1 3213954 3214214 D hypothetical protein 3213954..3214214 Aliivibrio salmonicida LFI1238 6988776 YP_002264293.1 CDS VSAL_I2968 NC_011312.1 3214247 3214498 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(3214247..3214498) Aliivibrio salmonicida LFI1238 6987998 YP_002264294.1 CDS VSAL_I2969 NC_011312.1 3214660 3215853 D transposase 3214660..3215853 Aliivibrio salmonicida LFI1238 6987999 YP_002264295.1 CDS VSAL_I2970 NC_011312.1 3216114 3216305 D hypothetical protein 3216114..3216305 Aliivibrio salmonicida LFI1238 6988000 YP_002264296.1 CDS VSAL_I2971 NC_011312.1 3216466 3217407 D LysR family transcriptional regulator 3216466..3217407 Aliivibrio salmonicida LFI1238 6988001 YP_002264297.1 CDS VSAL_I2972 NC_011312.1 3217530 3218510 R zinc-binding alcohol dehydrogenase complement(3217530..3218510) Aliivibrio salmonicida LFI1238 6988002 YP_002264298.1 CDS fadA NC_011312.1 3219285 3220448 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(3219285..3220448) Aliivibrio salmonicida LFI1238 6988003 YP_002264299.1 CDS fadB NC_011312.1 3220462 3222642 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(3220462..3222642) Aliivibrio salmonicida LFI1238 6988472 YP_002264300.1 CDS VSAL_I2975 NC_011312.1 3222885 3223499 D hypothetical protein 3222885..3223499 Aliivibrio salmonicida LFI1238 6988473 YP_002264301.1 CDS trkH NC_011312.1 3223557 3225014 D Trk system potassium uptake protein TrkH 3223557..3225014 Aliivibrio salmonicida LFI1238 6988004 YP_002264302.1 CDS hemG NC_011312.1 3225042 3225566 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 3225042..3225566 Aliivibrio salmonicida LFI1238 6989319 YP_002264303.1 CDS VSAL_I2978 NC_011312.1 3225765 3226106 R No significant database matches. Expression may be regulated by Fur; hypothetical protein complement(3225765..3226106) Aliivibrio salmonicida LFI1238 6988199 YP_002264304.1 CDS VSAL_I2979 NC_011312.1 3226206 3228962 D Zn-dependent peptidase 3226206..3228962 Aliivibrio salmonicida LFI1238 6988005 YP_002264305.1 CDS VSAL_I2980 NC_011312.1 3229064 3229258 D hypothetical protein 3229064..3229258 Aliivibrio salmonicida LFI1238 6988006 YP_002264306.1 CDS VSAL_I2981 NC_011312.1 3229350 3229730 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(3229350..3229730) Aliivibrio salmonicida LFI1238 6988007 YP_002264307.1 CDS VSAL_I2982 NC_011312.1 3229912 3230334 D hypothetical protein 3229912..3230334 Aliivibrio salmonicida LFI1238 6988008 YP_002264308.1 CDS thiC NC_011312.1 3230776 3232722 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 3230776..3232722 Aliivibrio salmonicida LFI1238 6988200 YP_002264309.1 CDS thiE NC_011312.1 3232795 3233475 D thiamine-phosphate pyrophosphorylase 3232795..3233475 Aliivibrio salmonicida LFI1238 6989281 YP_002264310.1 CDS thiF NC_011312.1 3233468 3234316 D Possible alternative translational start site after codon 5; thiamine biosynthesis adenylyltransferase ThiF 3233468..3234316 Aliivibrio salmonicida LFI1238 6989282 YP_002264311.1 CDS thiS NC_011312.1 3234309 3234521 D thiamine biosynthesis protein ThiS 3234309..3234521 Aliivibrio salmonicida LFI1238 6989283 YP_002264312.1 CDS thiG NC_011312.1 3234523 3235293 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 3234523..3235293 Aliivibrio salmonicida LFI1238 6989291 YP_002264313.1 CDS thiH NC_011312.1 3235316 3236428 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 3235316..3236428 Aliivibrio salmonicida LFI1238 6989284 YP_002264314.1 CDS VSAL_I2989 NC_011312.1 3236553 3238976 R beta-N-acetylhexosaminidase complement(3236553..3238976) Aliivibrio salmonicida LFI1238 6989285 YP_002264315.1 CDS VSAL_I2990 NC_011312.1 3239242 3241035 R metallopeptidase complement(3239242..3241035) Aliivibrio salmonicida LFI1238 6988010 YP_002264316.1 CDS VSAL_I2991 NC_011312.1 3241116 3242081 R Similar to Escherichia coli HTH-type transcriptional regulator YidZ UniProt:P31463 (319 aa) fasta scores: E()=6.7e-30, 32.595% id in 316 aa; LysR family transcriptional regulator complement(3241116..3242081) Aliivibrio salmonicida LFI1238 6988011 YP_002264317.1 CDS VSAL_I2992 NC_011312.1 3242186 3243391 D Similar to Escherichia coli Multidrug resistance protein MdtL UniProt:P31462 (391 aa) fasta scores: E()=9.7e-26, 29.919% id in 371 aa; MFS transporter 3242186..3243391 Aliivibrio salmonicida LFI1238 6988012 YP_002264318.1 CDS VSAL_I2993 NC_011312.1 3243512 3243796 D hypothetical protein 3243512..3243796 Aliivibrio salmonicida LFI1238 6988013 YP_002264319.1 CDS VSAL_I2994 NC_011312.1 3243867 3244778 R integral membrane protein complement(3243867..3244778) Aliivibrio salmonicida LFI1238 6988014 YP_002264320.1 CDS rmuC NC_011312.1 3244906 3246426 D Similar to Escherichia coli DNA recombination protein RmuC UniProt:P0AG71 (475 aa) fasta scores: E()=2.3e-78, 55.305% id in 443 aa. Lack of similarity at the N-terminus in comparison to other proteins; DNA recombination protein RumC 3244906..3246426 Aliivibrio salmonicida LFI1238 6988015 YP_002264321.1 CDS ubiE NC_011312.1 3246486 3247250 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 3246486..3247250 Aliivibrio salmonicida LFI1238 6989127 YP_002264322.1 CDS VSAL_I2997 NC_011312.1 3247263 3247886 D hypothetical protein 3247263..3247886 Aliivibrio salmonicida LFI1238 6989351 YP_002264323.1 CDS ubiB NC_011312.1 3247883 3249514 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 3247883..3249514 Aliivibrio salmonicida LFI1238 6988016 YP_002264324.1 CDS tatA NC_011312.1 3249570 3249818 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 3249570..3249818 Aliivibrio salmonicida LFI1238 6989348 YP_002264325.1 CDS tatB NC_011312.1 3249822 3250199 D mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 3249822..3250199 Aliivibrio salmonicida LFI1238 6989273 YP_002264326.1 CDS tatC NC_011312.1 3250202 3250957 D sec-independent protein translocase protein TatC 3250202..3250957 Aliivibrio salmonicida LFI1238 6989274 YP_002264327.1 CDS VSAL_I3002 NC_011312.1 3251158 3252039 D transposase 3251158..3252039 Aliivibrio salmonicida LFI1238 6989275 YP_002264328.1 CDS VSAL_I3003 NC_011312.1 3253913 3254710 R TatD related DNase complement(3253913..3254710) Aliivibrio salmonicida LFI1238 6988359 YP_002264329.1 CDS hemB NC_011312.1 3254843 3255859 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3254843..3255859 Aliivibrio salmonicida LFI1238 6988018 YP_002264330.1 CDS VSAL_I3005 NC_011312.1 3256157 3256426 D transposase 3256157..3256426 Aliivibrio salmonicida LFI1238 6988641 YP_002264331.1 CDS VSAL_I3006 NC_011312.1 3256423 3256770 D transposase 3256423..3256770 Aliivibrio salmonicida LFI1238 6988019 YP_002264332.1 CDS VSAL_I3008 NC_011312.1 3258780 3259088 D hypothetical protein 3258780..3259088 Aliivibrio salmonicida LFI1238 6988021 YP_002264333.1 CDS VSAL_I3009 NC_011312.1 3259572 3260684 D transposase 3259572..3260684 Aliivibrio salmonicida LFI1238 6988022 YP_002264334.1 CDS neuD NC_011312.1 3260889 3261512 D capsular polysaccharide biosynthesis protein NeuD 3260889..3261512 Aliivibrio salmonicida LFI1238 6988023 YP_002264335.1 CDS neuB NC_011312.1 3261537 3262577 D sialic acid synthase 3261537..3262577 Aliivibrio salmonicida LFI1238 6988893 YP_002264336.1 CDS neuA NC_011312.1 3262582 3263835 D N-acylneuraminate cytidylyltransferase 3262582..3263835 Aliivibrio salmonicida LFI1238 6988891 YP_002264337.1 CDS neuC NC_011312.1 3263835 3265001 D polysialic acid biosynthesis protein P7 3263835..3265001 Aliivibrio salmonicida LFI1238 6988890 YP_002264338.1 CDS VSAL_I3014 NC_011312.1 3265006 3266274 D exopolysaccharide biosynthesis protein 3265006..3266274 Aliivibrio salmonicida LFI1238 6988892 YP_002264339.1 CDS VSAL_I3015 NC_011312.1 3266267 3267163 D hypothetical protein 3266267..3267163 Aliivibrio salmonicida LFI1238 6988024 YP_002264340.1 CDS VSAL_I3016 NC_011312.1 3267304 3268269 D Similar to Escherichia coli NeuNAc transferase WbwA UniProt:Q93NP9 (316 aa) fasta scores: E()=5.9e-14, 29.283% id in 321 aa; lipooligosaccharide sialyltransferase 3267304..3268269 Aliivibrio salmonicida LFI1238 6988025 YP_002264341.1 CDS rmlB NC_011312.1 3269745 3270860 D NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 3269745..3270860 Aliivibrio salmonicida LFI1238 6988027 YP_002264342.1 CDS rmlA NC_011312.1 3270860 3271747 D glucose-1-phosphate thymidylyltransferase 3270860..3271747 Aliivibrio salmonicida LFI1238 6989120 YP_002264343.1 CDS rmlD NC_011312.1 3271747 3272628 D dTDP-6-deoxy-l-mannose-dehydrogenase 3271747..3272628 Aliivibrio salmonicida LFI1238 6989117 YP_002264344.1 CDS rmlC NC_011312.1 3272633 3273187 D dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase 3272633..3273187 Aliivibrio salmonicida LFI1238 6989126 YP_002264345.1 CDS VSAL_I3024 NC_011312.1 3274828 3275706 D Similar to Escherichia coli glycosyltransferase WcaN UniProt:Q9X4C3 (287 aa) fasta scores: E()=1.5e-10, 32.489% id in 237 aa; glycosyl transferase family protein 3274828..3275706 Aliivibrio salmonicida LFI1238 6988029 YP_002264346.1 CDS VSAL_I3025 NC_011312.1 3275710 3276993 D membrane protein 3275710..3276993 Aliivibrio salmonicida LFI1238 6988030 YP_002264347.1 CDS VSAL_I3026 NC_011312.1 3277004 3277846 D Similar to Shigella boydii glycosyltransferase WbsW UniProt:Q6QQW8 (280 aa) fasta scores: E()=2.9e-07, 29.515% id in 227 aa; glycosyltransferase 3277004..3277846 Aliivibrio salmonicida LFI1238 6988031 YP_002264348.1 CDS VSAL_I3027 NC_011312.1 3277843 3278556 D glycosyltransferase 3277843..3278556 Aliivibrio salmonicida LFI1238 6988032 YP_002264349.1 CDS wbbJ NC_011312.1 3278556 3279128 D Similar to Escherichia coli lipopolysaccharide biosynthesis O-acetyl transferase WbbJ UniProt:P37750 (196 aa) fasta scores: E()=2e-08, 35.000% id in 140 aa; lipopolysaccharide biosynthesis O-acetyl transferase 3278556..3279128 Aliivibrio salmonicida LFI1238 6988033 YP_002264350.1 CDS VSAL_I3029 NC_011312.1 3279138 3280274 D NAD dependent epimerase/dehydratase 3279138..3280274 Aliivibrio salmonicida LFI1238 6989415 YP_002264351.1 CDS VSAL_I3030 NC_011312.1 3280302 3281303 D Similar to Aeromonas hydrophila lipopolysaccharide biosynthesis protein UniProt:Q8KXE8 (332 aa) fasta scores: E()=1.8e-14, 28.763% id in 299 aa; lipopolysaccharide biosynthesis protein 3280302..3281303 Aliivibrio salmonicida LFI1238 6988034 YP_002264352.1 CDS VSAL_I3031 NC_011312.1 3281316 3282278 D Similar to Pseudomonas aeruginosa O-antigen biosynthetic gene WbjF UniProt:P95426 (314 aa) fasta scores: E()=2.4e-35, 42.321% id in 293 aa; O-antigen biosynthetic gene WbjF 3281316..3282278 Aliivibrio salmonicida LFI1238 6988035 YP_002264353.1 CDS VSAL_I3032 NC_011312.1 3282275 3282823 D galactosyl transferase, capsular polysaccharide synthesis enzyme 3282275..3282823 Aliivibrio salmonicida LFI1238 6988036 YP_002264354.1 CDS VSAL_I3033 NC_011312.1 3282949 3284883 D Similar to Vibrio cholerae o139 epimerase/dehydratase UniProt:Q56627 (646 aa) fasta scores: E()=6.8e-152, 70.671% id in 641 aa; polysaccharide biosynthesis protein, epimerase/dehydratase 3282949..3284883 Aliivibrio salmonicida LFI1238 6988037 YP_002264355.1 CDS VSAL_I3035 NC_011312.1 3285847 3287040 D transposase 3285847..3287040 Aliivibrio salmonicida LFI1238 6988039 YP_002264356.1 CDS VSAL_I3038 NC_011312.1 3289804 3290346 D outer membrane protein 3289804..3290346 Aliivibrio salmonicida LFI1238 6988042 YP_002264357.1 CDS VSAL_I3039 NC_011312.1 3290498 3291688 D transposase 3290498..3291688 Aliivibrio salmonicida LFI1238 6988043 YP_002264358.1 CDS VSAL_I3040 NC_011312.1 3291945 3292262 D hypothetical protein 3291945..3292262 Aliivibrio salmonicida LFI1238 6988044 YP_002264359.1 CDS VSAL_I3041 NC_011312.1 3292255 3292950 D Similar to Edwardsiella ictaluri glycosyltransferase WbeiB UniProt:Q937Y0 (261 aa) fasta scores: E()=1.8e-11, 32.099% id in 243 aa; glycosyltransferase 3292255..3292950 Aliivibrio salmonicida LFI1238 6988045 YP_002264360.1 CDS VSAL_I3043 NC_011312.1 3294823 3295386 D hypothetical protein 3294823..3295386 Aliivibrio salmonicida LFI1238 6988047 YP_002264361.1 CDS VSAL_I3044 NC_011312.1 3295673 3296062 D hypothetical protein 3295673..3296062 Aliivibrio salmonicida LFI1238 6988048 YP_002264362.1 CDS VSAL_I3045 NC_011312.1 3296055 3296483 D hypothetical protein 3296055..3296483 Aliivibrio salmonicida LFI1238 6988049 YP_002264363.1 CDS VSAL_I3046 NC_011312.1 3296797 3297645 R transposase complement(3296797..3297645) Aliivibrio salmonicida LFI1238 6988050 YP_002264364.1 CDS VSAL_I3047 NC_011312.1 3298213 3302067 D helicase 3298213..3302067 Aliivibrio salmonicida LFI1238 6988051 YP_002264365.1 CDS VSAL_I3048 NC_011312.1 3302199 3303152 D hypothetical protein 3302199..3303152 Aliivibrio salmonicida LFI1238 6988052 YP_002264366.1 CDS gne NC_011312.1 3303337 3304344 D uridine diphosphate N-acetylgalactosamine 4-epimerase 3303337..3304344 Aliivibrio salmonicida LFI1238 6988053 YP_002264367.1 CDS gpmI NC_011312.1 3304661 3306211 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(3304661..3306211) Aliivibrio salmonicida LFI1238 6988615 YP_002264368.1 CDS VSAL_I3051 NC_011312.1 3306387 3306716 D hypothetical protein 3306387..3306716 Aliivibrio salmonicida LFI1238 6988618 YP_002264369.1 CDS VSAL_I3054 NC_011312.1 3308727 3309074 R transposase complement(3308727..3309074) Aliivibrio salmonicida LFI1238 6988055 YP_002264370.1 CDS VSAL_I3055 NC_011312.1 3309071 3309385 R transposase complement(3309071..3309385) Aliivibrio salmonicida LFI1238 6988056 YP_002264371.1 CDS VSAL_I3056 NC_011312.1 3310696 3311889 D transposase 3310696..3311889 Aliivibrio salmonicida LFI1238 6988057 YP_002264372.1 CDS glmU NC_011312.1 3312114 3313472 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(3312114..3313472) Aliivibrio salmonicida LFI1238 6988058 YP_002264373.1 CDS atpC NC_011312.1 3313708 3314130 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(3313708..3314130) Aliivibrio salmonicida LFI1238 6988592 YP_002264374.1 CDS atpD NC_011312.1 3314149 3315552 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(3314149..3315552) Aliivibrio salmonicida LFI1238 6988279 YP_002264375.1 CDS atpG NC_011312.1 3315586 3316452 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(3315586..3316452) Aliivibrio salmonicida LFI1238 6988280 YP_002264376.1 CDS atpA NC_011312.1 3316498 3318039 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(3316498..3318039) Aliivibrio salmonicida LFI1238 6988283 YP_002264377.1 CDS atpH NC_011312.1 3318053 3318586 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(3318053..3318586) Aliivibrio salmonicida LFI1238 6988277 YP_002264378.1 CDS atpF NC_011312.1 3318604 3319074 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(3318604..3319074) Aliivibrio salmonicida LFI1238 6988284 YP_002264379.1 CDS atpE NC_011312.1 3319128 3319385 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(3319128..3319385) Aliivibrio salmonicida LFI1238 6988282 YP_002264380.1 CDS atpB NC_011312.1 3319447 3320259 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(3319447..3320259) Aliivibrio salmonicida LFI1238 6988281 YP_002264381.1 CDS atpI NC_011312.1 3320268 3320657 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(3320268..3320657) Aliivibrio salmonicida LFI1238 6988278 YP_002264382.1 CDS VSAL_I3067 NC_011312.1 3320846 3321730 R Similar to Bacillus subtilis Stage 0 sporulation protein J UniProt:P26497 (282 aa) blastp scores: E()=3e-41; chromosome partitioning protein ParB complement(3320846..3321730) Aliivibrio salmonicida LFI1238 6988285 YP_002264383.1 CDS VSAL_I3068 NC_011312.1 3321723 3322520 R chromosome partitioning protein, sporulation initiation inhibitor protein Soj complement(3321723..3322520) Aliivibrio salmonicida LFI1238 6988059 YP_002264384.1 CDS gidB NC_011312.1 3322536 3323165 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(3322536..3323165) Aliivibrio salmonicida LFI1238 6988060 YP_002264385.1 CDS gidA NC_011312.1 3323167 3325056 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(3323167..3325056) Aliivibrio salmonicida LFI1238 6988589 YP_002264386.1 CDS rctB NC_011313.1 1084 3069 D Similar to Vibrio harveyi RctB UniProt:Q6W6R5 (662 aa) fasta scores: E()=6e-178, 69.970% id in 656 aa; oriCII binding protein RctB 1084..3069 Aliivibrio salmonicida LFI1238 6962620 YP_002264387.1 CDS VSAL_II0002 NC_011313.1 3426 3773 D putative endoribonuclease L-PSP 3426..3773 Aliivibrio salmonicida LFI1238 6962568 YP_002264388.1 CDS VSAL_II0006 NC_011313.1 7378 7692 D transposase 7378..7692 Aliivibrio salmonicida LFI1238 6961500 YP_002264389.1 CDS VSAL_II0008 NC_011313.1 7796 8677 D transposase 7796..8677 Aliivibrio salmonicida LFI1238 6961502 YP_002264390.1 CDS VSAL_II0010 NC_011313.1 10763 12406 R hypothetical protein complement(10763..12406) Aliivibrio salmonicida LFI1238 6961504 YP_002264391.1 CDS recQ NC_011313.1 12519 14438 R Similar to Escherichia coli ATP-dependent DNA helicase RecQ UniProt:P15043 (608 aa) fasta scores: E()=2.7e-51, 45.201% id in 323 aa; putative ATP-dependent DNA helicase complement(12519..14438) Aliivibrio salmonicida LFI1238 6961505 YP_002264392.1 CDS VSAL_II0012 NC_011313.1 14438 14851 R peptidyl-tRNA hydrolase domain-containing protein complement(14438..14851) Aliivibrio salmonicida LFI1238 6962569 YP_002264393.1 CDS VSAL_II0013 NC_011313.1 14938 15294 D hypothetical protein 14938..15294 Aliivibrio salmonicida LFI1238 6961506 YP_002264394.1 CDS VSAL_II0014 NC_011313.1 15463 16461 D putative SAM-dependent methyltransferase 15463..16461 Aliivibrio salmonicida LFI1238 6961507 YP_002264395.1 CDS VSAL_II0015 NC_011313.1 16639 17757 D Similar to Enterobacter aerogenes AcrA protein precursor UniProt:Q9AEG2 (399 aa) fasta scores: E()=2.3e-33, 34.973% id in 366 aa; secretion protein, HlyD family 16639..17757 Aliivibrio salmonicida LFI1238 6961508 YP_002264396.1 CDS VSAL_II0017 NC_011313.1 18608 19798 R transposase complement(18608..19798) Aliivibrio salmonicida LFI1238 6961510 YP_002264397.1 CDS VSAL_II0018 NC_011313.1 19931 20536 R Similar to Pseudomonas aeruginosa Outer membrane porin F precursor OprF UniProt:P13794 (350 aa) fasta scores: E()=3.2e-14, 37.179% id in 156 aa; outer membrane protein OmpA family complement(19931..20536) Aliivibrio salmonicida LFI1238 6961511 YP_002264398.1 CDS VSAL_II0019 NC_011313.1 20539 21861 R outer membrane efflux protein complement(20539..21861) Aliivibrio salmonicida LFI1238 6961512 YP_002264399.1 CDS VSAL_II0020 NC_011313.1 22375 31047 D Similar to Staphylococcus hyicus Biofilm-associated protein Bap UniProt:Q4ZHU0 (3278 aa) fasta scores: E()=2.4e-25, 24.872% id in 2738 aa. Expression may be regulated by Fur; hemolysin-type calcium-binding protein 22375..31047 Aliivibrio salmonicida LFI1238 6961513 YP_002264400.1 CDS pdxH NC_011313.1 31164 31799 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 31164..31799 Aliivibrio salmonicida LFI1238 6961514 YP_002264401.1 CDS VSAL_II0023 NC_011313.1 32123 33610 R transposase complement(32123..33610) Aliivibrio salmonicida LFI1238 6961515 YP_002264402.1 CDS VSAL_II0024 NC_011313.1 33682 34029 R transposase complement(33682..34029) Aliivibrio salmonicida LFI1238 6961516 YP_002264403.1 CDS VSAL_II0026 NC_011313.1 34583 35080 R hypothetical protein complement(34583..35080) Aliivibrio salmonicida LFI1238 6962413 YP_002264404.1 CDS VSAL_II0027 NC_011313.1 35194 36138 R protein alx complement(35194..36138) Aliivibrio salmonicida LFI1238 6961519 YP_002264405.1 CDS VSAL_II0028 NC_011313.1 36529 37692 D hypothetical protein 36529..37692 Aliivibrio salmonicida LFI1238 6961520 YP_002264406.1 CDS VSAL_II0031 NC_011313.1 41155 42642 R transposase complement(41155..42642) Aliivibrio salmonicida LFI1238 6961523 YP_002264407.1 CDS VSAL_II0032 NC_011313.1 42714 43061 R transposase complement(42714..43061) Aliivibrio salmonicida LFI1238 6961524 YP_002264408.1 CDS VSAL_II0033 NC_011313.1 43058 43372 R transposase complement(43058..43372) Aliivibrio salmonicida LFI1238 6961525 YP_002264409.1 CDS VSAL_II0034 NC_011313.1 44608 45717 R secretion protein, HlyD family complement(44608..45717) Aliivibrio salmonicida LFI1238 6961526 YP_002264410.1 CDS VSAL_II0035 NC_011313.1 45894 46502 D putative transcriptional regulator, TetR family 45894..46502 Aliivibrio salmonicida LFI1238 6961527 YP_002264411.1 CDS VSAL_II0036 NC_011313.1 46584 47504 R membrane protein complement(46584..47504) Aliivibrio salmonicida LFI1238 6961528 YP_002264412.1 CDS malT NC_011313.1 47611 50316 R Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT complement(47611..50316) Aliivibrio salmonicida LFI1238 6961529 YP_002264413.1 CDS malP NC_011313.1 50713 53166 D maltodextrin phosphorylase 50713..53166 Aliivibrio salmonicida LFI1238 6962527 YP_002264414.1 CDS malQ NC_011313.1 53224 55404 D amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 53224..55404 Aliivibrio salmonicida LFI1238 6962525 YP_002264415.1 CDS VSAL_II0041 NC_011313.1 57716 58597 R transposase complement(57716..58597) Aliivibrio salmonicida LFI1238 6962470 YP_002264416.1 CDS VSAL_II0042 NC_011313.1 58697 59011 D transposase 58697..59011 Aliivibrio salmonicida LFI1238 6961530 YP_002264417.1 CDS VSAL_II0043 NC_011313.1 59008 59355 D transposase 59008..59355 Aliivibrio salmonicida LFI1238 6961531 YP_002264418.1 CDS VSAL_II0046 NC_011313.1 60913 62400 R transposase complement(60913..62400) Aliivibrio salmonicida LFI1238 6961534 YP_002264419.1 CDS VSAL_II0047 NC_011313.1 62472 62819 R transposase complement(62472..62819) Aliivibrio salmonicida LFI1238 6961535 YP_002264420.1 CDS VSAL_II0048 NC_011313.1 62816 63130 R transposase complement(62816..63130) Aliivibrio salmonicida LFI1238 6961536 YP_002264421.1 CDS chb NC_011313.1 63564 66209 R N,N'-diacetylchitobiase (chitobiase) complement(63564..66209) Aliivibrio salmonicida LFI1238 6961538 YP_002264422.1 CDS VSAL_II0051 NC_011313.1 66735 67235 D Similar to Escherichia coli Inner membrane protein YcdZ UniProt:P75916 (163 aa) fasta scores: E()=9.8e-34,68.243% id in 148 aa; inner membrane protein 66735..67235 Aliivibrio salmonicida LFI1238 6962442 YP_002264423.1 CDS VSAL_II0052 NC_011313.1 67915 68814 R response regulator protein complement(67915..68814) Aliivibrio salmonicida LFI1238 6962416 YP_002264424.1 CDS VSAL_II0053 NC_011313.1 68853 71309 R membrane associated response regulator,histidine kinase complement(68853..71309) Aliivibrio salmonicida LFI1238 6961540 YP_002264425.1 CDS VSAL_II0054 NC_011313.1 71442 78503 R hypothetical protein complement(71442..78503) Aliivibrio salmonicida LFI1238 6961541 YP_002264426.1 CDS VSAL_II0055 NC_011313.1 78698 79012 D hypothetical protein 78698..79012 Aliivibrio salmonicida LFI1238 6961542 YP_002264427.1 CDS VSAL_II0056 NC_011313.1 79067 80395 D putative type I secretion protein, HlyD family 79067..80395 Aliivibrio salmonicida LFI1238 6961543 YP_002264428.1 CDS VSAL_II0057 NC_011313.1 80402 82627 D putative membrane associated response regulator 80402..82627 Aliivibrio salmonicida LFI1238 6961544 YP_002264429.1 CDS VSAL_II0058 NC_011313.1 82627 83997 D Similar to Pseudomonas aeruginosa Alkaline protease secretion protein AprF UniProt:Q03027 (481 aa) fasta scores: E()=1.8e-12, 20.588% id in 408 aa; putative type I toxin secretion system, outer membrane efflux protein 82627..83997 Aliivibrio salmonicida LFI1238 6961545 YP_002264430.1 CDS VSAL_II0059 NC_011313.1 83994 85577 D Similar to Pseudomonas fluorescens Zinc-protease transporter AprD UniProt:O67993 (579 aa) fasta scores: E()=5.1e-09, 22.770% id in 527 aa; putative type I toxin secretion system, membrane transport protein 83994..85577 Aliivibrio salmonicida LFI1238 6961546 YP_002264431.1 CDS VSAL_II0060 NC_011313.1 85578 87731 D Similar to Serratia marcescens Secretion protein LipB UniProt:Q54456 (588 aa) fasta scores: E()=5.4e-21,24.291% id in 564 aa; putative type I toxin secretion system,ATP-binding protein 85578..87731 Aliivibrio salmonicida LFI1238 6961547 YP_002264432.1 CDS VSAL_II0061 NC_011313.1 87782 88576 R Similar to Bacillus sp Lichenase precursor Bga1 UniProt:Q45648 (276 aa) fasta scores: E()=9.2e-22, 36.538% id in 260 aa; exported glycosyl hydrolase, family 16 complement(87782..88576) Aliivibrio salmonicida LFI1238 6961548 YP_002264433.1 CDS VSAL_II0062 NC_011313.1 88569 90053 R membrane protein complement(88569..90053) Aliivibrio salmonicida LFI1238 6961549 YP_002264434.1 CDS VSAL_II0063 NC_011313.1 90232 91932 D Similar to Yersinia ruckeri Putative ATP-binding metalloprotease secretion protein UniProt:Q8VLR8 (580 aa) fasta scores: E()=1.2e-60, 38.283% id in 559 aa; putative type I secretion system, ATP-binding protein 90232..91932 Aliivibrio salmonicida LFI1238 6961550 YP_002264435.1 CDS VSAL_II0064 NC_011313.1 91947 93236 D Similar to Rhizobium meliloti Membrane fusion protein Expd2 UniProt:O05198 (473 aa) fasta scores: E()=1.1e-33, 28.538% id in 424 aa; putative type I secretion protein, HlyD family 91947..93236 Aliivibrio salmonicida LFI1238 6961551 YP_002264436.1 CDS VSAL_II0065 NC_011313.1 93246 93488 D membrane protein 93246..93488 Aliivibrio salmonicida LFI1238 6961552 YP_002264437.1 CDS VSAL_II0066 NC_011313.1 93524 94282 D membrane protein 93524..94282 Aliivibrio salmonicida LFI1238 6961553 YP_002264438.1 CDS VSAL_II0067 NC_011313.1 94418 94579 R hypothetical protein complement(94418..94579) Aliivibrio salmonicida LFI1238 6961554 YP_002264439.1 CDS VSAL_II0068 NC_011313.1 94576 94767 R hypothetical protein complement(94576..94767) Aliivibrio salmonicida LFI1238 6961555 YP_002264440.1 CDS VSAL_II0069 NC_011313.1 94820 96307 R transposase complement(94820..96307) Aliivibrio salmonicida LFI1238 6961556 YP_002264441.1 CDS VSAL_II0070 NC_011313.1 96379 96726 R transposase complement(96379..96726) Aliivibrio salmonicida LFI1238 6961557 YP_002264442.1 CDS astB NC_011313.1 97685 99019 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase complement(97685..99019) Aliivibrio salmonicida LFI1238 6961560 YP_002264443.1 CDS VSAL_II0074 NC_011313.1 99366 100550 D Expression may be regulated by Fur; membrane protein 99366..100550 Aliivibrio salmonicida LFI1238 6962433 YP_002264444.1 CDS VSAL_II0075 NC_011313.1 100746 101366 R hypothetical protein complement(100746..101366) Aliivibrio salmonicida LFI1238 6961561 YP_002264445.1 CDS VSAL_II0076 NC_011313.1 101509 102360 D integral membrane protein 101509..102360 Aliivibrio salmonicida LFI1238 6961562 YP_002264446.1 CDS VSAL_II0077 NC_011313.1 102347 103216 R AraC family transcriptional regulator complement(102347..103216) Aliivibrio salmonicida LFI1238 6961563 YP_002264447.1 CDS VSAL_II0078 NC_011313.1 103330 104484 D putative aminotransferase 103330..104484 Aliivibrio salmonicida LFI1238 6961564 YP_002264448.1 CDS VSAL_II0079 NC_011313.1 104527 105651 D Expression may be stress-induced; zinc carboxypeptidase 104527..105651 Aliivibrio salmonicida LFI1238 6961565 YP_002264449.1 CDS VSAL_II0080 NC_011313.1 105883 107370 R transposase complement(105883..107370) Aliivibrio salmonicida LFI1238 6961566 YP_002264450.1 CDS VSAL_II0081 NC_011313.1 107442 107789 R transposase complement(107442..107789) Aliivibrio salmonicida LFI1238 6961567 YP_002264451.1 CDS VSAL_II0083 NC_011313.1 108268 109188 R putative permease complement(108268..109188) Aliivibrio salmonicida LFI1238 6961569 YP_002264452.1 CDS VSAL_II0084 NC_011313.1 109326 110519 D transposase 109326..110519 Aliivibrio salmonicida LFI1238 6961570 YP_002264453.1 CDS VSAL_II0085 NC_011313.1 110722 110889 D hypothetical protein 110722..110889 Aliivibrio salmonicida LFI1238 6961571 YP_002264454.1 CDS VSAL_II0086 NC_011313.1 110942 111295 D hypothetical protein 110942..111295 Aliivibrio salmonicida LFI1238 6961572 YP_002264455.1 CDS VSAL_II0087 NC_011313.1 111425 111577 D hypothetical protein 111425..111577 Aliivibrio salmonicida LFI1238 6961573 YP_002264456.1 CDS VSAL_II0088 NC_011313.1 111582 111908 D hypothetical protein 111582..111908 Aliivibrio salmonicida LFI1238 6961574 YP_002264457.1 CDS fruR NC_011313.1 112006 112983 R binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR complement(112006..112983) Aliivibrio salmonicida LFI1238 6961575 YP_002264458.1 CDS fruB NC_011313.1 113254 114390 D phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 113254..114390 Aliivibrio salmonicida LFI1238 6962466 YP_002264459.1 CDS fruK NC_011313.1 114394 115371 D 1-phosphofructokinase 114394..115371 Aliivibrio salmonicida LFI1238 6962464 YP_002264460.1 CDS fruA NC_011313.1 115402 117141 D PTS system fructose-specific transporter subunit IIBC 115402..117141 Aliivibrio salmonicida LFI1238 6962465 YP_002264461.1 CDS VSAL_II0093 NC_011313.1 117309 117767 R hypothetical protein complement(117309..117767) Aliivibrio salmonicida LFI1238 6962463 YP_002264462.1 CDS VSAL_II0095 NC_011313.1 118500 118814 D transposase 118500..118814 Aliivibrio salmonicida LFI1238 6961577 YP_002264463.1 CDS VSAL_II0096 NC_011313.1 118811 119158 D transposase 118811..119158 Aliivibrio salmonicida LFI1238 6961578 YP_002264464.1 CDS VSAL_II0097 NC_011313.1 119315 120196 D transposase 119315..120196 Aliivibrio salmonicida LFI1238 6961579 YP_002264465.1 CDS VSAL_II0098 NC_011313.1 120237 121724 D transposase 120237..121724 Aliivibrio salmonicida LFI1238 6961580 YP_002264466.1 CDS VSAL_II0099 NC_011313.1 122303 123475 R Expression may be stress-induced; putative lipoprotein complement(122303..123475) Aliivibrio salmonicida LFI1238 6961581 YP_002264467.1 CDS VSAL_II0100 NC_011313.1 123595 123861 R hypothetical protein complement(123595..123861) Aliivibrio salmonicida LFI1238 6961582 YP_002264468.1 CDS VSAL_II0101 NC_011313.1 124530 125705 R Similar to Pseudomonas sp Carboxypeptidase G2 precursor Cpg2 UniProt:P06621 (415 aa) fasta scores: E()=1.6e-11, 25.849% id in 383 aa; peptidase complement(124530..125705) Aliivibrio salmonicida LFI1238 6961583 YP_002264469.1 CDS VSAL_II0102 NC_011313.1 125864 127009 D peptide methionine sulfoxide reductase 125864..127009 Aliivibrio salmonicida LFI1238 6961584 YP_002264470.1 CDS VSAL_II0103 NC_011313.1 127079 127834 R DeoR-family transcriptional regulator complement(127079..127834) Aliivibrio salmonicida LFI1238 6961585 YP_002264471.1 CDS VSAL_II0104 NC_011313.1 128086 129027 D Expression may be regulated by Fur; putative 6-phosphogluconate dehydrogenase 128086..129027 Aliivibrio salmonicida LFI1238 6961586 YP_002264472.1 CDS VSAL_II0106 NC_011313.1 129529 130719 R transposase complement(129529..130719) Aliivibrio salmonicida LFI1238 6961588 YP_002264473.1 CDS VSAL_II0107 NC_011313.1 130965 132158 R transposase complement(130965..132158) Aliivibrio salmonicida LFI1238 6961589 YP_002264474.1 CDS VSAL_II0110 NC_011313.1 135157 137238 D Similar to Salmonella typhimurium Ferrioxamine B receptor precursor FoxA UniProt:Q56145 (702 aa) fasta scores: E()=8.7e-31, 26.752% id in 628 aa. Expression may be regulated by Fur; TonB dependent receptor 135157..137238 Aliivibrio salmonicida LFI1238 6961592 YP_002264475.1 CDS VSAL_II0111 NC_011313.1 137339 138106 D hypothetical protein 137339..138106 Aliivibrio salmonicida LFI1238 6961593 YP_002264476.1 CDS tolR2 NC_011313.1 138108 139463 D biopolymer transport protein TolR 138108..139463 Aliivibrio salmonicida LFI1238 6961594 YP_002264477.1 CDS exbB2 NC_011313.1 139463 139972 D TonB system transport protein ExbB2 139463..139972 Aliivibrio salmonicida LFI1238 6962606 YP_002264478.1 CDS exbD2 NC_011313.1 139969 140373 D TonB system transport protein ExbD2 139969..140373 Aliivibrio salmonicida LFI1238 6962457 YP_002264479.1 CDS tonB2 NC_011313.1 140373 140993 D TonB protein 140373..140993 Aliivibrio salmonicida LFI1238 6962459 YP_002264480.1 CDS VSAL_II0116 NC_011313.1 140990 142192 D hypothetical protein 140990..142192 Aliivibrio salmonicida LFI1238 6962608 YP_002264481.1 CDS VSAL_II0117 NC_011313.1 142368 143561 R transposase complement(142368..143561) Aliivibrio salmonicida LFI1238 6961595 YP_002264482.1 CDS VSAL_II0118 NC_011313.1 143791 144435 D Similar to Pasteurella piscicida Putative iron-regulated protein (fragment) UniProt:Q6ZXD3 (106 aa) fasta scores: E()=1.7e-17, 54.054% id in 111 aa. Expression may be regulated by Fur; membrane protein 143791..144435 Aliivibrio salmonicida LFI1238 6961596 YP_002264483.1 CDS VSAL_II0119 NC_011313.1 144469 144993 D hypothetical protein 144469..144993 Aliivibrio salmonicida LFI1238 6961597 YP_002264484.1 CDS VSAL_II0120 NC_011313.1 144999 145874 D Possible alternative translational start site after codon 10; hypothetical protein 144999..145874 Aliivibrio salmonicida LFI1238 6961598 YP_002264485.1 CDS VSAL_II0121 NC_011313.1 145932 146249 D hypothetical protein 145932..146249 Aliivibrio salmonicida LFI1238 6961599 YP_002264486.1 CDS VSAL_II0122 NC_011313.1 146246 146809 D hypothetical protein 146246..146809 Aliivibrio salmonicida LFI1238 6961600 YP_002264487.1 CDS VSAL_II0123 NC_011313.1 146832 147755 D Similar to Streptococcus sanguis Manganese ABC transporter substrate-binding lipoprotein precursor SsaB UniProt:P31304 (309 aa) fasta scores: E()=8.1e-14, 26.774% id in 310 aa; periplasmic solute binding protein 146832..147755 Aliivibrio salmonicida LFI1238 6961601 YP_002264488.1 CDS VSAL_II0124 NC_011313.1 147755 148519 D Similar to Bacillus subtilis Manganese transport system ATP-binding protein MntB UniProt:O34338 (250 aa) fasta scores: E()=5.7e-17, 33.047% id in 233 aa; ABC transporter ATP-binding protein 147755..148519 Aliivibrio salmonicida LFI1238 6961602 YP_002264489.1 CDS VSAL_II0125 NC_011313.1 148519 149394 D ABC-3 transporter protein, membrane component 148519..149394 Aliivibrio salmonicida LFI1238 6961603 YP_002264490.1 CDS VSAL_II0126 NC_011313.1 149437 150321 D membrane protein 149437..150321 Aliivibrio salmonicida LFI1238 6961604 YP_002264491.1 CDS VSAL_II0127 NC_011313.1 150664 151485 D Weakly similar Streptococcus pyogenes Putative recombinase-phage-associated UniProt:Q8K7P3 (191 aa) fasta scores: E()=3.9e-05, 32.174% id in 115 aa; hypothetical protein 150664..151485 Aliivibrio salmonicida LFI1238 6961605 YP_002264492.1 CDS VSAL_II0128 NC_011313.1 151885 152211 D hypothetical protein 151885..152211 Aliivibrio salmonicida LFI1238 6961606 YP_002264493.1 CDS VSAL_II0130 NC_011313.1 153112 154305 R transposase complement(153112..154305) Aliivibrio salmonicida LFI1238 6961608 YP_002264494.1 CDS VSAL_II0131 NC_011313.1 155315 155662 R transposase complement(155315..155662) Aliivibrio salmonicida LFI1238 6961609 YP_002264495.1 CDS VSAL_II0132 NC_011313.1 155659 155973 R transposase complement(155659..155973) Aliivibrio salmonicida LFI1238 6961610 YP_002264496.1 CDS VSAL_II0134 NC_011313.1 157455 158930 D GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells; N-acetylglucosamine-binding protein A 157455..158930 Aliivibrio salmonicida LFI1238 6961612 YP_002264497.1 CDS VSAL_II0135 NC_011313.1 158992 159531 D Similar to Escherichia coli Cytochrome b561 homolog 2 UniProt:P75925 (188 aa) fasta scores: E()=6.9e-05,26.966% id in 178 aa; putative cytochrome b561 158992..159531 Aliivibrio salmonicida LFI1238 6961613 YP_002264498.1 CDS VSAL_II0136 NC_011313.1 160057 160548 D hypothetical protein 160057..160548 Aliivibrio salmonicida LFI1238 6961614 YP_002264499.1 CDS VSAL_II0137 NC_011313.1 160552 160908 R hypothetical protein complement(160552..160908) Aliivibrio salmonicida LFI1238 6961615 YP_002264500.1 CDS VSAL_II0138 NC_011313.1 161245 161445 D hypothetical protein 161245..161445 Aliivibrio salmonicida LFI1238 6961616 YP_002264501.1 CDS VSAL_II0139 NC_011313.1 161531 162022 R Similar to Vibrio fischeri PilA UniProt:Q8KTJ5 (128 aa) fasta scores: E()=1e-05, 35.583% id in 163 aa. CDS contains additional internal amino acids, residues 63 to 100, in comparison to Vibrio fischeri orthologue; PilA-like type-IV pilus protein complement(161531..162022) Aliivibrio salmonicida LFI1238 6961617 YP_002264502.1 CDS VSAL_II0140 NC_011313.1 162314 162520 D hypothetical protein 162314..162520 Aliivibrio salmonicida LFI1238 6961618 YP_002264503.1 CDS VSAL_II0141 NC_011313.1 162613 163335 D hypothetical protein 162613..163335 Aliivibrio salmonicida LFI1238 6961619 YP_002264504.1 CDS rhlE NC_011313.1 163541 165028 D Similar to Escherichia coli Putative ATP-dependent RNA helicase RhlE UniProt:P25888 (454 aa) fasta scores: E()=2.9e-84, 58.590% id in 454 aa; putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) 163541..165028 Aliivibrio salmonicida LFI1238 6961620 YP_002264505.1 CDS VSAL_II0143 NC_011313.1 165330 166778 D Expression may be regulated by Fur; membrane associated GGDEF protein 165330..166778 Aliivibrio salmonicida LFI1238 6962570 YP_002264506.1 CDS VSAL_II0144 NC_011313.1 166914 168359 D membrane associated GGDEF protein 166914..168359 Aliivibrio salmonicida LFI1238 6961621 YP_002264507.1 CDS emrD NC_011313.1 168657 169859 D multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 168657..169859 Aliivibrio salmonicida LFI1238 6961622 YP_002264508.1 CDS dbpA NC_011313.1 169989 171377 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(169989..171377) Aliivibrio salmonicida LFI1238 6961623 YP_002264509.1 CDS VSAL_II0147 NC_011313.1 171614 173077 D membrane associated GGDEF protein 171614..173077 Aliivibrio salmonicida LFI1238 6962452 YP_002264510.1 CDS VSAL_II0148 NC_011313.1 173152 173880 D Similar to Bordetella bronchiseptica AlcD UniProt:O52832 (267 aa) fasta scores: E()=2.3e-12, 25.630% id in 238 aa. Expression may be regulated by Fur; hypothetical protein 173152..173880 Aliivibrio salmonicida LFI1238 6961624 YP_002264511.1 CDS VSAL_II0149 NC_011313.1 173877 175025 R Similar to Bacillus subtilis Multidrug resistance protein 1 Bmr UniProt:P33449 (389 aa) fasta scores: E()=0.00092, 20.588% id in 374 aa. Expression may be regulated by Fur; MFS transporter complement(173877..175025) Aliivibrio salmonicida LFI1238 6961625 YP_002264512.1 CDS VSAL_II0150 NC_011313.1 175230 175997 D Expression may be regulated by Fur; ferrichrome transport ATP-binding protein FhuC 175230..175997 Aliivibrio salmonicida LFI1238 6961626 YP_002264513.1 CDS VSAL_II0151 NC_011313.1 176035 176925 D ferrichrome-binding periplasmic protein 176035..176925 Aliivibrio salmonicida LFI1238 6961627 YP_002264514.1 CDS VSAL_II0152 NC_011313.1 176925 178913 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 176925..178913 Aliivibrio salmonicida LFI1238 6961628 YP_002264515.1 CDS VSAL_II0153 NC_011313.1 179753 180379 R hypothetical protein complement(179753..180379) Aliivibrio salmonicida LFI1238 6961629 YP_002264516.1 CDS VSAL_II0154 NC_011313.1 180443 181057 R putative nitroreductase complement(180443..181057) Aliivibrio salmonicida LFI1238 6961630 YP_002264517.1 CDS VSAL_II0155 NC_011313.1 181124 182107 R zinc-binding dehydrogenase complement(181124..182107) Aliivibrio salmonicida LFI1238 6961631 YP_002264518.1 CDS VSAL_II0156 NC_011313.1 182270 183169 D LysR family transcriptional regulator 182270..183169 Aliivibrio salmonicida LFI1238 6961632 YP_002264519.1 CDS VSAL_II0158 NC_011313.1 184826 185707 D transposase 184826..185707 Aliivibrio salmonicida LFI1238 6961634 YP_002264520.1 CDS cyoE NC_011313.1 186185 187057 R protoheme IX farnesyltransferase (cytochrome o ubiquinol oxidase C subunit IV) complement(186185..187057) Aliivibrio salmonicida LFI1238 6961635 YP_002264521.1 CDS cyoD NC_011313.1 187066 187395 R cytochrome o ubiquinol oxidase subunit CyoD complement(187066..187395) Aliivibrio salmonicida LFI1238 6962451 YP_002264522.1 CDS cyoC NC_011313.1 187395 188003 R Similar to Pseudomonas putida CyoC UniProt:Q6S4M5 (208 aa) fasta scores: E()=1.5e-48, 65.128% id in 195 aa; cytochrome o ubiquinol oxidase subunit III complement(187395..188003) Aliivibrio salmonicida LFI1238 6962450 YP_002264523.1 CDS cyoA NC_011313.1 190046 190969 R Expression may be regulated by Fur; cytochrome o ubiquinol oxidase subunit II (ubiquinol oxidase subunit 2 ) complement(190046..190969) Aliivibrio salmonicida LFI1238 6962448 YP_002264524.1 CDS VSAL_II0164 NC_011313.1 191627 192361 D membrane protein 191627..192361 Aliivibrio salmonicida LFI1238 6962447 YP_002264525.1 CDS VSAL_II0165 NC_011313.1 192358 193143 D membrane protein 192358..193143 Aliivibrio salmonicida LFI1238 6961636 YP_002264526.1 CDS VSAL_II0166 NC_011313.1 193158 193508 D hypothetical protein 193158..193508 Aliivibrio salmonicida LFI1238 6961637 YP_002264527.1 CDS VSAL_II0167 NC_011313.1 193505 193903 D hypothetical protein 193505..193903 Aliivibrio salmonicida LFI1238 6961638 YP_002264528.1 CDS VSAL_II0168 NC_011313.1 193964 195088 R hypothetical protein complement(193964..195088) Aliivibrio salmonicida LFI1238 6961639 YP_002264529.1 CDS VSAL_II0169 NC_011313.1 195408 195875 D hypothetical protein 195408..195875 Aliivibrio salmonicida LFI1238 6961640 YP_002264530.1 CDS VSAL_II0170 NC_011313.1 195935 197566 R Similar to Vibrio cholerae Toxin coregulated pilus biosynthesis protein I TcpI UniProt:P29486 (620 aa) fasta scores: E()=1.3e-31, 37.203% id in 379 aa; methyl-accepting chemotaxis protein complement(195935..197566) Aliivibrio salmonicida LFI1238 6961641 YP_002264531.1 CDS VSAL_II0171 NC_011313.1 197679 197969 R hypothetical protein complement(197679..197969) Aliivibrio salmonicida LFI1238 6961642 YP_002264532.1 CDS VSAL_II0172 NC_011313.1 197990 198322 R hypothetical protein complement(197990..198322) Aliivibrio salmonicida LFI1238 6961643 YP_002264533.1 CDS VSAL_II0173 NC_011313.1 198406 198720 D transposase 198406..198720 Aliivibrio salmonicida LFI1238 6961644 YP_002264534.1 CDS VSAL_II0174 NC_011313.1 198717 199064 D transposase 198717..199064 Aliivibrio salmonicida LFI1238 6961645 YP_002264535.1 CDS VSAL_II0175 NC_011313.1 199136 200623 D transposase 199136..200623 Aliivibrio salmonicida LFI1238 6961646 YP_002264536.1 CDS VSAL_II0176 NC_011313.1 200732 202702 R hypothetical protein complement(200732..202702) Aliivibrio salmonicida LFI1238 6961647 YP_002264537.1 CDS VSAL_II0177 NC_011313.1 202973 203296 R hypothetical protein complement(202973..203296) Aliivibrio salmonicida LFI1238 6961648 YP_002264538.1 CDS VSAL_II0178 NC_011313.1 203420 204292 D Similar to Escherichia coli HTH-type transcriptional regulator HdfR UniProt:P0A8R9 (279 aa) fasta scores: E()=2.5e-34, 41.429% id in 280 aa; LysR family transcriptional regulator 203420..204292 Aliivibrio salmonicida LFI1238 6961649 YP_002264539.1 CDS VSAL_II0179 NC_011313.1 204363 205406 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(204363..205406) Aliivibrio salmonicida LFI1238 6961650 YP_002264540.1 CDS VSAL_II0180 NC_011313.1 205699 207045 D divalent cation transporter magnesium transporter 205699..207045 Aliivibrio salmonicida LFI1238 6961651 YP_002264541.1 CDS VSAL_II0181 NC_011313.1 207607 208383 D ABC-type glycine betaine transport system,substrate binding domain 207607..208383 Aliivibrio salmonicida LFI1238 6961652 YP_002264542.1 CDS VSAL_II0182 NC_011313.1 208504 209349 R universal stress protein complement(208504..209349) Aliivibrio salmonicida LFI1238 6961653 YP_002264543.1 CDS VSAL_II0183 NC_011313.1 209361 210848 R putative sulfate transporter complement(209361..210848) Aliivibrio salmonicida LFI1238 6961654 YP_002264544.1 CDS VSAL_II0184 NC_011313.1 211360 212235 R integral membrane protein complement(211360..212235) Aliivibrio salmonicida LFI1238 6961655 YP_002264545.1 CDS VSAL_II0185 NC_011313.1 212316 212690 R hypothetical protein complement(212316..212690) Aliivibrio salmonicida LFI1238 6961656 YP_002264546.1 CDS VSAL_II0188 NC_011313.1 214523 215716 R transposase complement(214523..215716) Aliivibrio salmonicida LFI1238 6961659 YP_002264547.1 CDS VSAL_II0190 NC_011313.1 216726 217073 R transposase complement(216726..217073) Aliivibrio salmonicida LFI1238 6961661 YP_002264548.1 CDS VSAL_II0191 NC_011313.1 217070 217384 R transposase complement(217070..217384) Aliivibrio salmonicida LFI1238 6961662 YP_002264549.1 CDS VSAL_II0192 NC_011313.1 217484 218365 D transposase 217484..218365 Aliivibrio salmonicida LFI1238 6961663 YP_002264550.1 CDS VSAL_II0194 NC_011313.1 219030 220415 R Similar to Acinetobacter baumannii BfmS UniProt:Q2VSW5 (549 aa) fasta scores: E()=5.5e-21, 33.234% id in 334 aa; two-component system sensor protein, histidine kinase complement(219030..220415) Aliivibrio salmonicida LFI1238 6961665 YP_002264551.1 CDS VSAL_II0196 NC_011313.1 221325 221684 D hypothetical protein 221325..221684 Aliivibrio salmonicida LFI1238 6961667 YP_002264552.1 CDS VSAL_II0197 NC_011313.1 221796 222479 D transcriptional activator protein, response regulator 221796..222479 Aliivibrio salmonicida LFI1238 6961668 YP_002264553.1 CDS VSAL_II0198 NC_011313.1 222484 223824 D Similar to Escherichia coli Sensor kinase CusS UniProt:P77485 (480 aa) fasta scores: E()=1.2e-33, 29.787% id in 470 aa; two-component system sensor protein, histidine kinase 222484..223824 Aliivibrio salmonicida LFI1238 6961669 YP_002264554.1 CDS ogt NC_011313.1 224956 225429 R methylguanine-DNA--protein-cysteine methyltransferase complement(224956..225429) Aliivibrio salmonicida LFI1238 6961671 YP_002264555.1 CDS VSAL_II0201 NC_011313.1 225434 225739 R hypothetical protein complement(225434..225739) Aliivibrio salmonicida LFI1238 6962546 YP_002264556.1 CDS VSAL_II0202 NC_011313.1 225928 227121 R transposase complement(225928..227121) Aliivibrio salmonicida LFI1238 6961672 YP_002264557.1 CDS VSAL_II0203 NC_011313.1 227749 227946 D hypothetical protein 227749..227946 Aliivibrio salmonicida LFI1238 6961673 YP_002264558.1 CDS VSAL_II0204 NC_011313.1 228254 228511 D hypothetical protein 228254..228511 Aliivibrio salmonicida LFI1238 6961674 YP_002264559.1 CDS VSAL_II0205 NC_011313.1 228601 229203 D hypothetical protein 228601..229203 Aliivibrio salmonicida LFI1238 6961675 YP_002264560.1 CDS VSAL_II0206 NC_011313.1 229267 229827 D putative O-acetyltransferase 229267..229827 Aliivibrio salmonicida LFI1238 6961676 YP_002264561.1 CDS VSAL_II0208 NC_011313.1 231014 232093 R transposase complement(231014..232093) Aliivibrio salmonicida LFI1238 6961678 YP_002264562.1 CDS VSAL_II0210 NC_011313.1 233207 233839 D putative aldolase 233207..233839 Aliivibrio salmonicida LFI1238 6961680 YP_002264563.1 CDS hyi NC_011313.1 233839 234615 D hydroxypyruvate isomerase 233839..234615 Aliivibrio salmonicida LFI1238 6961681 YP_002264564.1 CDS VSAL_II0212 NC_011313.1 234721 236184 D Similar to Pseudomonas aeruginosa Gluconate permease GnuT UniProt:Q9ZIJ1 (450 aa) fasta scores: E()=1e-34, 29.306% id in 447 aa; gluconate permease 234721..236184 Aliivibrio salmonicida LFI1238 6962493 YP_002264565.1 CDS gfa NC_011313.1 236279 236842 R catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein complement(236279..236842) Aliivibrio salmonicida LFI1238 6961682 YP_002264566.1 CDS VSAL_II0214 NC_011313.1 237488 238360 D patatin-like phospholipase 237488..238360 Aliivibrio salmonicida LFI1238 6962469 YP_002264567.1 CDS catA NC_011313.1 238419 239870 D catalase 238419..239870 Aliivibrio salmonicida LFI1238 6961683 YP_002264568.1 CDS VSAL_II0216 NC_011313.1 240090 241070 D hypothetical protein 240090..241070 Aliivibrio salmonicida LFI1238 6962441 YP_002264569.1 CDS VSAL_II0217 NC_011313.1 241306 242493 D chitinase B 241306..242493 Aliivibrio salmonicida LFI1238 6961684 YP_002264570.1 CDS VSAL_II0218 NC_011313.1 242732 244309 D ABC transporter ATP-binding protein 242732..244309 Aliivibrio salmonicida LFI1238 6961685 YP_002264571.1 CDS VSAL_II0219 NC_011313.1 244432 245919 R transposase complement(244432..245919) Aliivibrio salmonicida LFI1238 6961686 YP_002264572.1 CDS VSAL_II0220 NC_011313.1 245991 246338 R transposase complement(245991..246338) Aliivibrio salmonicida LFI1238 7072198 YP_002264573.1 CDS VSAL_II0221 NC_011313.1 246335 246604 R transposase complement(246335..246604) Aliivibrio salmonicida LFI1238 6961688 YP_002264574.1 CDS VSAL_II0222 NC_011313.1 246909 247592 D exonuclease 246909..247592 Aliivibrio salmonicida LFI1238 6961689 YP_002264575.1 CDS VSAL_II0223 NC_011313.1 247649 247861 R Expression may be regulated by Fur; hypothetical protein complement(247649..247861) Aliivibrio salmonicida LFI1238 6961690 YP_002264576.1 CDS VSAL_II0224 NC_011313.1 248032 248610 D TetR family transcriptional regulator 248032..248610 Aliivibrio salmonicida LFI1238 6961691 YP_002264577.1 CDS soxR NC_011313.1 248666 249112 D redox-sensitive transcriptional activator SoxR 248666..249112 Aliivibrio salmonicida LFI1238 6961692 YP_002264578.1 CDS VSAL_II0226 NC_011313.1 249754 250005 D hypothetical protein 249754..250005 Aliivibrio salmonicida LFI1238 6962585 YP_002264579.1 CDS VSAL_II0228 NC_011313.1 250510 250857 D transposase 250510..250857 Aliivibrio salmonicida LFI1238 6961694 YP_002264580.1 CDS VSAL_II0229 NC_011313.1 250929 252416 D transposase 250929..252416 Aliivibrio salmonicida LFI1238 6961695 YP_002264581.1 CDS VSAL_II0230 NC_011313.1 252511 253752 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(252511..253752) Aliivibrio salmonicida LFI1238 6961696 YP_002264582.1 CDS cheV NC_011313.1 253944 254885 D chemotaxis protein CheV 253944..254885 Aliivibrio salmonicida LFI1238 6961697 YP_002264583.1 CDS VSAL_II0232 NC_011313.1 255229 257208 R Similar to Sulfolobus acidocaldarius Glycogen debranching enzyme (Amylase) TreX UniProt:O05152 (713 aa) fasta scores: E()=3.7e-85, 38.576% id in 674 aa; putative alpha amylase complement(255229..257208) Aliivibrio salmonicida LFI1238 6962443 YP_002264584.1 CDS VSAL_II0234 NC_011313.1 257774 258088 D transposase 257774..258088 Aliivibrio salmonicida LFI1238 6962524 YP_002264585.1 CDS VSAL_II0235 NC_011313.1 258085 258432 D transposase 258085..258432 Aliivibrio salmonicida LFI1238 6961699 YP_002264586.1 CDS VSAL_II0236 NC_011313.1 258504 259991 D transposase 258504..259991 Aliivibrio salmonicida LFI1238 6961700 YP_002264587.1 CDS VSAL_II0237 NC_011313.1 260103 260735 R Similar to Vibrio fischeri Hypothetical protein UniProt:Q5DZB9 (217 aa) fasta scores: E()=2.2e-72, 86.190% id in 210 aa. CDS may be truncated by the insertion of the downstream IS element and subsequent recombination events; hypothetical protein complement(260103..260735) Aliivibrio salmonicida LFI1238 6961701 YP_002264588.1 CDS glgC NC_011313.1 260997 262253 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 260997..262253 Aliivibrio salmonicida LFI1238 6961702 YP_002264589.1 CDS glgA NC_011313.1 262243 263691 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 262243..263691 Aliivibrio salmonicida LFI1238 6961703 YP_002264590.1 CDS VSAL_II0240 NC_011313.1 263816 264478 D membrane protein 263816..264478 Aliivibrio salmonicida LFI1238 6961704 YP_002264591.1 CDS VSAL_II0241 NC_011313.1 264608 264922 D transposase 264608..264922 Aliivibrio salmonicida LFI1238 6961705 YP_002264592.1 CDS VSAL_II0242 NC_011313.1 264919 265266 D transposase 264919..265266 Aliivibrio salmonicida LFI1238 6961706 YP_002264593.1 CDS VSAL_II0243 NC_011313.1 265338 266825 D transposase 265338..266825 Aliivibrio salmonicida LFI1238 6961707 YP_002264594.1 CDS VSAL_II0245 NC_011313.1 268428 271004 D nitrite reductase large subunit 268428..271004 Aliivibrio salmonicida LFI1238 6961709 YP_002264595.1 CDS VSAL_II0246 NC_011313.1 271060 271356 D nitrite reductase [NAD(P)H] small subunit 271060..271356 Aliivibrio salmonicida LFI1238 6961710 YP_002264596.1 CDS VSAL_II0247 NC_011313.1 271366 272835 D nitrate transporter 271366..272835 Aliivibrio salmonicida LFI1238 6961711 YP_002264597.1 CDS VSAL_II0248 NC_011313.1 272873 274645 D putative membrane associated protein kinase 272873..274645 Aliivibrio salmonicida LFI1238 6961712 YP_002264598.1 CDS VSAL_II0249 NC_011313.1 274816 276681 D Expression may be stress-induced and may be regulated by Fur; hypothetical protein 274816..276681 Aliivibrio salmonicida LFI1238 6961713 YP_002264599.1 CDS VSAL_II0250 NC_011313.1 276693 277187 D putative lipoprotein 276693..277187 Aliivibrio salmonicida LFI1238 6961714 YP_002264600.1 CDS VSAL_II0251 NC_011313.1 277234 278424 R hypothetical protein complement(277234..278424) Aliivibrio salmonicida LFI1238 6961715 YP_002264601.1 CDS VSAL_II0252 NC_011313.1 278788 280092 R putative extracellular protein complement(278788..280092) Aliivibrio salmonicida LFI1238 6961716 YP_002264602.1 CDS VSAL_II0253 NC_011313.1 280345 281604 R Similar to Vibrio sp. 14a09 Putative 3-hydroxy-3-methylglutaryl coenzyme A reductase UniProt:Q2UXT1 (218 aa) fasta scores: E()=1.2e-72, 91.743% id in 218 aa; putative 3-hydroxy-3-methylglutaryl coenzyme a reductase complement(280345..281604) Aliivibrio salmonicida LFI1238 6961717 YP_002264603.1 CDS speA NC_011313.1 281869 283794 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 281869..283794 Aliivibrio salmonicida LFI1238 6961718 YP_002264604.1 CDS VSAL_II0256 NC_011313.1 284385 285578 D transposase 284385..285578 Aliivibrio salmonicida LFI1238 6962587 YP_002264605.1 CDS VSAL_II0258 NC_011313.1 287880 288227 R transposase complement(287880..288227) Aliivibrio salmonicida LFI1238 6961720 YP_002264606.1 CDS VSAL_II0259 NC_011313.1 288224 288538 R transposase complement(288224..288538) Aliivibrio salmonicida LFI1238 6961721 YP_002264607.1 CDS VSAL_II0260 NC_011313.1 288638 289519 D transposase 288638..289519 Aliivibrio salmonicida LFI1238 6961722 YP_002264608.1 CDS VSAL_II0261 NC_011313.1 289664 290092 D CDS contains a rare Leucine start codon (TTA), or may be truncated by the insertion of the upstream IS element; hypothetical protein 289664..290092 Aliivibrio salmonicida LFI1238 6961723 YP_002264609.1 CDS VSAL_II0262 NC_011313.1 290085 291440 D membrane protein 290085..291440 Aliivibrio salmonicida LFI1238 6961724 YP_002264610.1 CDS VSAL_II0263 NC_011313.1 291527 292363 R putative short chain dehydrogenase complement(291527..292363) Aliivibrio salmonicida LFI1238 6961725 YP_002264611.1 CDS VSAL_II0264 NC_011313.1 292388 292888 R hypothetical protein complement(292388..292888) Aliivibrio salmonicida LFI1238 6961726 YP_002264612.1 CDS VSAL_II0265 NC_011313.1 292992 293657 R hypothetical protein complement(292992..293657) Aliivibrio salmonicida LFI1238 6961727 YP_002264613.1 CDS VSAL_II0266 NC_011313.1 293742 294731 R hypothetical protein complement(293742..294731) Aliivibrio salmonicida LFI1238 6961728 YP_002264614.1 CDS VSAL_II0267 NC_011313.1 294891 295898 D Similar to Mycobacterium tuberculosis Putative virulence-regulating 38 kDa protein VirS UniProt:Q06861 (340 aa) fasta scores: E()=6e-17, 23.724% id in 333 aa; AraC family transcriptional regulator 294891..295898 Aliivibrio salmonicida LFI1238 6961729 YP_002264615.1 CDS VSAL_II0268 NC_011313.1 295927 296832 R hypothetical protein complement(295927..296832) Aliivibrio salmonicida LFI1238 6961730 YP_002264616.1 CDS VSAL_II0269 NC_011313.1 297158 300256 D hypothetical protein 297158..300256 Aliivibrio salmonicida LFI1238 6961731 YP_002264617.1 CDS VSAL_II0270 NC_011313.1 300387 301874 R transposase complement(300387..301874) Aliivibrio salmonicida LFI1238 6961732 YP_002264618.1 CDS VSAL_II0271 NC_011313.1 301946 302293 R transposase complement(301946..302293) Aliivibrio salmonicida LFI1238 6961733 YP_002264619.1 CDS iucB NC_011313.1 304225 305136 D siderophore biosynthesis protein IucB (N6-hydroxylysine acetyl transferase) 304225..305136 Aliivibrio salmonicida LFI1238 6962496 YP_002264620.1 CDS VSAL_II0276 NC_011313.1 306843 307265 D transposase 306843..307265 Aliivibrio salmonicida LFI1238 6962498 YP_002264621.1 CDS VSAL_II0277 NC_011313.1 307283 307849 D transposase 307283..307849 Aliivibrio salmonicida LFI1238 6961736 YP_002264622.1 CDS iucD NC_011313.1 308032 309345 D siderophore biosynthesis protein IucD 308032..309345 Aliivibrio salmonicida LFI1238 6961737 YP_002264623.1 CDS iutA NC_011313.1 309454 311625 D Expression may be regulated by Fur; ferric aerobactin receptor 309454..311625 Aliivibrio salmonicida LFI1238 6962499 YP_002264624.1 CDS VSAL_II0280 NC_011313.1 311818 312741 D integral membrane protein 311818..312741 Aliivibrio salmonicida LFI1238 6962500 YP_002264625.1 CDS VSAL_II0281 NC_011313.1 312751 313203 D membrane protein 312751..313203 Aliivibrio salmonicida LFI1238 6961738 YP_002264626.1 CDS VSAL_II0283 NC_011313.1 315229 316554 D transposase 315229..316554 Aliivibrio salmonicida LFI1238 6961740 YP_002264627.1 CDS VSAL_II0284 NC_011313.1 316629 317507 R 6-phosphogluconate dehydrogenase complement(316629..317507) Aliivibrio salmonicida LFI1238 6961741 YP_002264628.1 CDS VSAL_II0285 NC_011313.1 317556 318176 R arylesterase precursor complement(317556..318176) Aliivibrio salmonicida LFI1238 6961742 YP_002264629.1 CDS VSAL_II0286 NC_011313.1 318380 319054 D ABC transporter ATP-binding protein 318380..319054 Aliivibrio salmonicida LFI1238 6961743 YP_002264630.1 CDS VSAL_II0287 NC_011313.1 319054 321501 D permease 319054..321501 Aliivibrio salmonicida LFI1238 6961744 YP_002264631.1 CDS VSAL_II0288 NC_011313.1 322311 322691 D hypothetical protein 322311..322691 Aliivibrio salmonicida LFI1238 6961745 YP_002264632.1 CDS VSAL_II0289 NC_011313.1 322776 323213 D cytochrome b562 322776..323213 Aliivibrio salmonicida LFI1238 6961746 YP_002264633.1 CDS VSAL_II0290 NC_011313.1 323450 324160 D hypothetical protein 323450..324160 Aliivibrio salmonicida LFI1238 6961747 YP_002264634.1 CDS VSAL_II0291 NC_011313.1 324173 325054 D LysR family transcriptional regulator 324173..325054 Aliivibrio salmonicida LFI1238 6961748 YP_002264635.1 CDS VSAL_II0292 NC_011313.1 325122 325349 R glutaredoxin complement(325122..325349) Aliivibrio salmonicida LFI1238 6961749 YP_002264636.1 CDS VSAL_II0293 NC_011313.1 325392 325940 R hypothetical protein complement(325392..325940) Aliivibrio salmonicida LFI1238 6961750 YP_002264637.1 CDS VSAL_II0294 NC_011313.1 326103 327995 R putative signaling protein complement(326103..327995) Aliivibrio salmonicida LFI1238 6961751 YP_002264638.1 CDS VSAL_II0295 NC_011313.1 328146 328790 R sugar transferase complement(328146..328790) Aliivibrio salmonicida LFI1238 6961752 YP_002264639.1 CDS VSAL_II0296 NC_011313.1 328808 329992 R putative transmembrane glycosyl transferase complement(328808..329992) Aliivibrio salmonicida LFI1238 6961753 YP_002264640.1 CDS VSAL_II0297 NC_011313.1 329989 331077 R putative glycosyl transferase complement(329989..331077) Aliivibrio salmonicida LFI1238 6961754 YP_002264641.1 CDS VSAL_II0298 NC_011313.1 331205 332704 R hypothetical protein complement(331205..332704) Aliivibrio salmonicida LFI1238 6961755 YP_002264642.1 CDS VSAL_II0299 NC_011313.1 332701 333858 R putative glycosyl transferases complement(332701..333858) Aliivibrio salmonicida LFI1238 6961756 YP_002264643.1 CDS VSAL_II0300 NC_011313.1 333848 334603 R hypothetical protein complement(333848..334603) Aliivibrio salmonicida LFI1238 6961757 YP_002264644.1 CDS VSAL_II0301 NC_011313.1 334750 336144 R O-antigen polymerase complement(334750..336144) Aliivibrio salmonicida LFI1238 6961758 YP_002264645.1 CDS VSAL_II0302 NC_011313.1 336141 337583 R putative polysaccharide biosynthesis protein complement(336141..337583) Aliivibrio salmonicida LFI1238 6961759 YP_002264646.1 CDS VSAL_II0303 NC_011313.1 337580 338743 R putative glycosyl transferase complement(337580..338743) Aliivibrio salmonicida LFI1238 6961760 YP_002264647.1 CDS VSAL_II0304 NC_011313.1 338736 340016 R putative glycosyl transferase complement(338736..340016) Aliivibrio salmonicida LFI1238 6961761 YP_002264648.1 CDS VSAL_II0305 NC_011313.1 340176 341165 R putative glycosyl transferase complement(340176..341165) Aliivibrio salmonicida LFI1238 6961762 YP_002264649.1 CDS luxO NC_011313.1 341212 342717 R two-component response regulator,transcriptional regulatory protein LuxO complement(341212..342717) Aliivibrio salmonicida LFI1238 6961763 YP_002264650.1 CDS VSAL_II0307 NC_011313.1 342757 345024 R response regulator, histidine kinase complement(342757..345024) Aliivibrio salmonicida LFI1238 6962516 YP_002264651.1 CDS VSAL_II0308 NC_011313.1 345063 346583 R putative response regulator complement(345063..346583) Aliivibrio salmonicida LFI1238 6961764 YP_002264652.1 CDS VSAL_II0309 NC_011313.1 346586 347293 R Similar to Streptococcus pneumoniae Capsular polysaccharide synthesis protein cps14D UniProt:P72512 (227 aa) fasta scores: E()=7.4e-05, 26.738% id in 187 aa; putative capsular polysaccharide synthesis protein complement(346586..347293) Aliivibrio salmonicida LFI1238 6961765 YP_002264653.1 CDS VSAL_II0310 NC_011313.1 347293 349404 R Similar to Vibrio fischeri Transporter UniProt:Q5DYQ4 (703 aa) fasta scores: E()=0, 90.612% id in 703 aa; polysaccharide biosynthesis/export protein complement(347293..349404) Aliivibrio salmonicida LFI1238 6961766 YP_002264654.1 CDS VSAL_II0311 NC_011313.1 349419 350246 R outer membrane protein, OmpA family complement(349419..350246) Aliivibrio salmonicida LFI1238 6961767 YP_002264655.1 CDS VSAL_II0312 NC_011313.1 350282 350599 R hypothetical protein complement(350282..350599) Aliivibrio salmonicida LFI1238 6961768 YP_002264656.1 CDS VSAL_II0313 NC_011313.1 351006 353117 D Expression may be regulated by Fur; hypothetical protein 351006..353117 Aliivibrio salmonicida LFI1238 6961769 YP_002264657.1 CDS VSAL_II0314 NC_011313.1 353132 353623 D putative lipoprotein 353132..353623 Aliivibrio salmonicida LFI1238 6961770 YP_002264658.1 CDS VSAL_II0315 NC_011313.1 353726 355456 R putative response regulator complement(353726..355456) Aliivibrio salmonicida LFI1238 6961771 YP_002264659.1 CDS VSAL_II0316 NC_011313.1 355466 358141 R response regulator, histidine kinase complement(355466..358141) Aliivibrio salmonicida LFI1238 6961772 YP_002264660.1 CDS VSAL_II0317 NC_011313.1 358216 358698 D hypothetical protein 358216..358698 Aliivibrio salmonicida LFI1238 6961773 YP_002264661.1 CDS VSAL_II0318 NC_011313.1 358702 359760 D hypothetical protein 358702..359760 Aliivibrio salmonicida LFI1238 6961774 YP_002264662.1 CDS rpoS NC_011313.1 359989 360870 D RNA polymerase sigma factor 359989..360870 Aliivibrio salmonicida LFI1238 6961775 YP_002264663.1 CDS VSAL_II0320 NC_011313.1 360933 362528 D putative membrane associated signaling protein 360933..362528 Aliivibrio salmonicida LFI1238 6962575 YP_002264664.1 CDS VSAL_II0321 NC_011313.1 362701 364563 D Similar to Escherichia coli Cellulose synthase catalytic subunit BcsA UniProt:P37653 (872 aa) fasta scores: E()=1.9e-14, 26.644% id in 578 aa; putative glycosyl transferase 362701..364563 Aliivibrio salmonicida LFI1238 6961776 YP_002264665.1 CDS VSAL_II0322 NC_011313.1 364553 365872 D hypothetical protein 364553..365872 Aliivibrio salmonicida LFI1238 6961777 YP_002264666.1 CDS VSAL_II0323 NC_011313.1 365899 367302 D putative lipoprotein 365899..367302 Aliivibrio salmonicida LFI1238 6961778 YP_002264667.1 CDS VSAL_II0324 NC_011313.1 367305 368705 D putative lipoprotein 367305..368705 Aliivibrio salmonicida LFI1238 6961779 YP_002264668.1 CDS VSAL_II0325 NC_011313.1 368705 369676 D hypothetical protein 368705..369676 Aliivibrio salmonicida LFI1238 6961780 YP_002264669.1 CDS VSAL_II0326 NC_011313.1 369702 370142 R hypothetical protein complement(369702..370142) Aliivibrio salmonicida LFI1238 6961781 YP_002264670.1 CDS VSAL_II0327 NC_011313.1 370162 371307 R putative nucleotidyl transferase complement(370162..371307) Aliivibrio salmonicida LFI1238 6961782 YP_002264671.1 CDS VSAL_II0328 NC_011313.1 371321 371614 R CDS contains a rare Leucine start codon (CTT), or may have an alternative translational start; putative anti-sigma F factor antagonist complement(371321..371614) Aliivibrio salmonicida LFI1238 6961783 YP_002264672.1 CDS VSAL_II0329 NC_011313.1 371605 372852 R putative response regulator complement(371605..372852) Aliivibrio salmonicida LFI1238 6961784 YP_002264673.1 CDS VSAL_II0330 NC_011313.1 373048 374316 D hypothetical protein 373048..374316 Aliivibrio salmonicida LFI1238 6961785 YP_002264674.1 CDS VSAL_II0331 NC_011313.1 374479 375486 D hypothetical protein 374479..375486 Aliivibrio salmonicida LFI1238 6961786 YP_002264675.1 CDS VSAL_II0333 NC_011313.1 376245 376559 D transposase 376245..376559 Aliivibrio salmonicida LFI1238 6961788 YP_002264676.1 CDS VSAL_II0334 NC_011313.1 376556 376903 D transposase 376556..376903 Aliivibrio salmonicida LFI1238 6961789 YP_002264677.1 CDS VSAL_II0335 NC_011313.1 376975 378462 D transposase 376975..378462 Aliivibrio salmonicida LFI1238 6961790 YP_002264678.1 CDS VSAL_II0337 NC_011313.1 379444 380181 D glycerophosphoryl diester phosphodiesterase 379444..380181 Aliivibrio salmonicida LFI1238 6961792 YP_002264679.1 CDS VSAL_II0338 NC_011313.1 380222 381505 D MFS transporter 380222..381505 Aliivibrio salmonicida LFI1238 6961793 YP_002264680.1 CDS yidA NC_011313.1 381591 382400 R phosphatase complement(381591..382400) Aliivibrio salmonicida LFI1238 6961794 YP_002264681.1 CDS VSAL_II0340 NC_011313.1 382504 383157 D hypothetical protein 382504..383157 Aliivibrio salmonicida LFI1238 6962617 YP_002264682.1 CDS VSAL_II0341 NC_011313.1 383889 384830 R membrane protein complement(383889..384830) Aliivibrio salmonicida LFI1238 6961795 YP_002264683.1 CDS VSAL_II0342 NC_011313.1 384949 385278 R No significant database matches. Expression may be regulated by Fur; hypothetical protein complement(384949..385278) Aliivibrio salmonicida LFI1238 6961796 YP_002264684.1 CDS VSAL_II0343 NC_011313.1 385655 385912 R putative HTH-type transcriptional regulator complement(385655..385912) Aliivibrio salmonicida LFI1238 6961797 YP_002264685.1 CDS VSAL_II0344 NC_011313.1 385987 386943 R putative HTH-type transcriptional regulator complement(385987..386943) Aliivibrio salmonicida LFI1238 6961798 YP_002264686.1 CDS VSAL_II0345 NC_011313.1 387052 387327 D membrane protein 387052..387327 Aliivibrio salmonicida LFI1238 6961799 YP_002264687.1 CDS VSAL_II0346 NC_011313.1 387592 388551 R putative nuclease complement(387592..388551) Aliivibrio salmonicida LFI1238 6961800 YP_002264688.1 CDS VSAL_II0348 NC_011313.1 389899 390465 R transposase complement(389899..390465) Aliivibrio salmonicida LFI1238 6961802 YP_002264689.1 CDS VSAL_II0349 NC_011313.1 390483 390905 R transposase complement(390483..390905) Aliivibrio salmonicida LFI1238 6961803 YP_002264690.1 CDS VSAL_II0350 NC_011313.1 391094 392491 D hypothetical protein 391094..392491 Aliivibrio salmonicida LFI1238 6961804 YP_002264691.1 CDS VSAL_II0351 NC_011313.1 392565 393788 D outer membrane protein transport protein 392565..393788 Aliivibrio salmonicida LFI1238 6961805 YP_002264692.1 CDS VSAL_II0352 NC_011313.1 393906 395561 D membrane associated sultatease 393906..395561 Aliivibrio salmonicida LFI1238 6961806 YP_002264693.1 CDS VSAL_II0353 NC_011313.1 395890 396615 D No significant database matches. Expression may be regulated by Fur; hypothetical protein 395890..396615 Aliivibrio salmonicida LFI1238 6961807 YP_002264694.1 CDS VSAL_II0354 NC_011313.1 396633 397319 D putative two-component response regulator 396633..397319 Aliivibrio salmonicida LFI1238 6961808 YP_002264695.1 CDS VSAL_II0355 NC_011313.1 397307 398746 D membrane associated sensor histidine kinase 397307..398746 Aliivibrio salmonicida LFI1238 6961809 YP_002264696.1 CDS VSAL_II0356 NC_011313.1 398805 399461 R hypothetical protein complement(398805..399461) Aliivibrio salmonicida LFI1238 6961810 YP_002264697.1 CDS VSAL_II0357 NC_011313.1 399534 401072 R arylsulfatase complement(399534..401072) Aliivibrio salmonicida LFI1238 6961811 YP_002264698.1 CDS VSAL_II0359 NC_011313.1 402199 403392 D transposase 402199..403392 Aliivibrio salmonicida LFI1238 6961813 YP_002264699.1 CDS VSAL_II0360 NC_011313.1 404127 405032 R LysR family transcriptional regulator complement(404127..405032) Aliivibrio salmonicida LFI1238 6961814 YP_002264700.1 CDS VSAL_II0361 NC_011313.1 405171 406313 D putative ABC transporter solute-binding protein 405171..406313 Aliivibrio salmonicida LFI1238 6961815 YP_002264701.1 CDS VSAL_II0362 NC_011313.1 406755 407645 D hypothetical protein 406755..407645 Aliivibrio salmonicida LFI1238 6961816 YP_002264702.1 CDS VSAL_II0363 NC_011313.1 407635 408783 D putative response regulator 407635..408783 Aliivibrio salmonicida LFI1238 6961817 YP_002264703.1 CDS VSAL_II0364 NC_011313.1 408851 409078 D hypothetical protein 408851..409078 Aliivibrio salmonicida LFI1238 6961818 YP_002264704.1 CDS VSAL_II0365 NC_011313.1 409246 409353 D hypothetical protein 409246..409353 Aliivibrio salmonicida LFI1238 6961819 YP_002264705.1 CDS VSAL_II0366 NC_011313.1 409512 409721 D Similar to Actinomycetemcomitans Fimbrial protein Flp precursor UniProt:O66149 (75 aa) fasta scores: E()=0.004, 31.429% id in 70 aa; fimbrial protein, Flp/Fap pilin component 409512..409721 Aliivibrio salmonicida LFI1238 6961820 YP_002264706.1 CDS tadV NC_011313.1 409732 410166 D Similar to Actinomycetemcomitans TadV UniProt:Q7X0M3 (142 aa) fasta scores: E()=5.7e-07, 33.103% id in 145 aa; type IV leader peptidase 409732..410166 Aliivibrio salmonicida LFI1238 6961821 YP_002264707.1 CDS rcpC NC_011313.1 410175 410957 D putative Flp pilus assembly protein 410175..410957 Aliivibrio salmonicida LFI1238 6962597 YP_002264708.1 CDS VSAL_II0369 NC_011313.1 410959 412296 D type II/III secretion system protein 410959..412296 Aliivibrio salmonicida LFI1238 6962567 YP_002264709.1 CDS VSAL_II0370 NC_011313.1 412293 412802 D putative lipoprotein 412293..412802 Aliivibrio salmonicida LFI1238 6961822 YP_002264710.1 CDS tadZ NC_011313.1 412804 414021 D Similar to Actinobacillus actinomycetemcomitans pilus assembly protein tadZ UniProt:Q8GCZ9 fasta scores: E()=0.002; type II secretion system protein Z 412804..414021 Aliivibrio salmonicida LFI1238 6961823 YP_002264711.1 CDS tadA NC_011313.1 414021 415307 D Similar to Actinomycetemcomitans TadA UniProt:Q9XC06 (426 aa) fasta scores: E()=1.3e-77, 53.318% id in 422 aa; type II/IV secretion system protein, ATP binding domain 414021..415307 Aliivibrio salmonicida LFI1238 6962598 YP_002264712.1 CDS tadB NC_011313.1 415304 416215 D Similar to Actinomycetemcomitans TadB UniProt:Q9XC05 (295 aa) fasta scores: E()=5.3e-28, 37.000% id in 300 aa; type II secretion system protein F 415304..416215 Aliivibrio salmonicida LFI1238 6962590 YP_002264713.1 CDS tadC NC_011313.1 416212 417090 D Similar to Actinomycetemcomitans TadC UniProt:Q9S4A8 (288 aa) fasta scores: E()=7e-23, 32.667% id in 300 aa; type II secretion system protein F 416212..417090 Aliivibrio salmonicida LFI1238 6962591 YP_002264714.1 CDS tadD NC_011313.1 417098 417841 D Similar to Actinomycetemcomitans TadD UniProt:Q9S4A7 (253 aa) fasta scores: E()=7.1e-13, 30.252% id in 238 aa; putative secretion system protein 417098..417841 Aliivibrio salmonicida LFI1238 6962592 YP_002264715.1 CDS tadE NC_011313.1 417828 418316 D Similar to Actinomycetemcomitans TadE UniProt:Q7X0L4 (191 aa) fasta scores: E()=0.75, 24.176% id in 182 aa; membrane associated secretion system protein 417828..418316 Aliivibrio salmonicida LFI1238 6962593 YP_002264716.1 CDS tadF NC_011313.1 418300 418839 D Similar to Actinomycetemcomitans TadF UniProt:Q9S4A5 (200 aa) fasta scores: E()=7.2e-08, 31.148% id in 183 aa; membrane associated secretion system protein 418300..418839 Aliivibrio salmonicida LFI1238 6962594 YP_002264717.1 CDS tadG NC_011313.1 418842 420110 D Similar to Actinomycetemcomitans TadG UniProt:Q9S4A4 (538 aa) fasta scores: E()=0.00046, 21.012% id in 514 aa; membrane associated secretion system protein 418842..420110 Aliivibrio salmonicida LFI1238 6962595 YP_002264718.1 CDS VSAL_II0380 NC_011313.1 420786 421877 D membrane protein 420786..421877 Aliivibrio salmonicida LFI1238 6961824 YP_002264719.1 CDS VSAL_II0381 NC_011313.1 421913 424120 R response regulator, histidine kinase complement(421913..424120) Aliivibrio salmonicida LFI1238 6961825 YP_002264720.1 CDS VSAL_II0382 NC_011313.1 424141 424536 R hypothetical protein complement(424141..424536) Aliivibrio salmonicida LFI1238 6961826 YP_002264721.1 CDS VSAL_II0383 NC_011313.1 424775 425635 D hypothetical protein 424775..425635 Aliivibrio salmonicida LFI1238 6961827 YP_002264722.1 CDS glpF NC_011313.1 426108 426962 D glycerol uptake facilitator protein 426108..426962 Aliivibrio salmonicida LFI1238 6961828 YP_002264723.1 CDS glpK NC_011313.1 427043 428557 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 427043..428557 Aliivibrio salmonicida LFI1238 6962475 YP_002264724.1 CDS glpR NC_011313.1 428748 429515 D glycerol-3-phosphate repressor protein 428748..429515 Aliivibrio salmonicida LFI1238 6962476 YP_002264725.1 CDS glpD NC_011313.1 429697 431244 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 429697..431244 Aliivibrio salmonicida LFI1238 6962477 YP_002264726.1 CDS VSAL_II0389 NC_011313.1 432258 433745 R transposase complement(432258..433745) Aliivibrio salmonicida LFI1238 6961829 YP_002264727.1 CDS VSAL_II0390 NC_011313.1 433817 434164 R transposase complement(433817..434164) Aliivibrio salmonicida LFI1238 6961830 YP_002264728.1 CDS VSAL_II0391 NC_011313.1 434161 434475 R transposase complement(434161..434475) Aliivibrio salmonicida LFI1238 6961831 YP_002264729.1 CDS VSAL_II0392 NC_011313.1 434825 436501 R putative signaling protein complement(434825..436501) Aliivibrio salmonicida LFI1238 6961832 YP_002264730.1 CDS VSAL_II0393x NC_011313.1 436664 439495 R response regulator, histidine kinase complement(436664..439495) Aliivibrio salmonicida LFI1238 7072199 YP_002264731.1 CDS VSAL_II0394 NC_011313.1 439492 440547 R Similar to Nitrosomonas europaea Cytochrome c551 peroxidase precursor Ccp UniProt:P55929 (334 aa) fasta scores: E()=7.6e-42, 42.907% id in 289 aa; cytochrome c551 peroxidase complement(439492..440547) Aliivibrio salmonicida LFI1238 6961834 YP_002264732.1 CDS glpC NC_011313.1 440699 441973 R anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C complement(440699..441973) Aliivibrio salmonicida LFI1238 6961835 YP_002264733.1 CDS glpB NC_011313.1 441970 443328 R sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B complement(441970..443328) Aliivibrio salmonicida LFI1238 6962473 YP_002264734.1 CDS glpA NC_011313.1 443325 445007 R anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A complement(443325..445007) Aliivibrio salmonicida LFI1238 6962472 YP_002264735.1 CDS VSAL_II0398 NC_011313.1 445302 449459 D Similar to Eubacterium acidaminophilum FdhA-I protein UniProt:Q93V06 (893 aa) fasta scores: E()=1.3e-116, 46.485% id in 882 aa; NAD-dependent formate dehydrogenase subunit alpha 445302..449459 Aliivibrio salmonicida LFI1238 6962471 YP_002264736.1 CDS pepT NC_011313.1 449548 450777 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(449548..450777) Aliivibrio salmonicida LFI1238 6961836 YP_002264737.1 CDS VSAL_II0400 NC_011313.1 451057 451440 R putative HTH-type transcriptional regulator complement(451057..451440) Aliivibrio salmonicida LFI1238 6962549 YP_002264738.1 CDS VSAL_II0401 NC_011313.1 451940 452734 D AraC family transcriptional regulator 451940..452734 Aliivibrio salmonicida LFI1238 6961837 YP_002264739.1 CDS VSAL_II0402 NC_011313.1 452998 453357 D hypothetical protein 452998..453357 Aliivibrio salmonicida LFI1238 6961838 YP_002264740.1 CDS VSAL_II0403 NC_011313.1 453450 454661 D Possible alternative translational start site after codon 13; putative membrane associated signaling protein 453450..454661 Aliivibrio salmonicida LFI1238 6961839 YP_002264741.1 CDS VSAL_II0404 NC_011313.1 454879 455442 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(454879..455442) Aliivibrio salmonicida LFI1238 6961840 YP_002264742.1 CDS VSAL_II0405 NC_011313.1 455580 457094 D putative HTH-type transcriptional regulator 455580..457094 Aliivibrio salmonicida LFI1238 6961841 YP_002264743.1 CDS VSAL_II0406 NC_011313.1 457152 459068 R glutathione-regulated potassium-efflux system protein complement(457152..459068) Aliivibrio salmonicida LFI1238 6961842 YP_002264744.1 CDS VSAL_II0407 NC_011313.1 459068 459691 R putative glutathione-regulated potassium-efflux system ancillary protein complement(459068..459691) Aliivibrio salmonicida LFI1238 6961843 YP_002264745.1 CDS qac NC_011313.1 459764 460093 R quaternary ammonium compound-resistance protein complement(459764..460093) Aliivibrio salmonicida LFI1238 6961844 YP_002264746.1 CDS VSAL_II0409 NC_011313.1 460285 460692 R hypothetical protein complement(460285..460692) Aliivibrio salmonicida LFI1238 6962566 YP_002264747.1 CDS VSAL_II0411 NC_011313.1 461778 463691 D hypothetical protein 461778..463691 Aliivibrio salmonicida LFI1238 6961846 YP_002264748.1 CDS VSAL_II0413 NC_011313.1 464477 466996 D hypothetical protein 464477..466996 Aliivibrio salmonicida LFI1238 6961848 YP_002264749.1 CDS VSAL_II0414 NC_011313.1 466989 467393 D hypothetical protein 466989..467393 Aliivibrio salmonicida LFI1238 6961849 YP_002264750.1 CDS VSAL_II0415 NC_011313.1 467531 467908 D hypothetical protein 467531..467908 Aliivibrio salmonicida LFI1238 6961850 YP_002264751.1 CDS VSAL_II0416 NC_011313.1 468079 469251 R Expression may be regulated by Fur; putative ferredoxin complement(468079..469251) Aliivibrio salmonicida LFI1238 6961851 YP_002264752.1 CDS VSAL_II0417 NC_011313.1 469318 470493 R Similar to Pseudomonas fluorescens ColS protein UniProt:P95472 (425 aa) fasta scores: E()=7.6e-09, 27.469% id in 324 aa; putative sensor kinase protein complement(469318..470493) Aliivibrio salmonicida LFI1238 6961852 YP_002264753.1 CDS VSAL_II0418 NC_011313.1 470558 471223 R Similar to Pseudomonas fluorescens ColR protein UniProt:P95471 (227 aa) fasta scores: E()=2.9e-33, 42.273% id in 220 aa; two-component system response regulator complement(470558..471223) Aliivibrio salmonicida LFI1238 6961853 YP_002264754.1 CDS VSAL_II0419 NC_011313.1 471381 472262 D transposase 471381..472262 Aliivibrio salmonicida LFI1238 6961854 YP_002264755.1 CDS VSAL_II0420 NC_011313.1 472312 473238 D putative lipoprotein 472312..473238 Aliivibrio salmonicida LFI1238 6961855 YP_002264756.1 CDS VSAL_II0421 NC_011313.1 473387 474292 D membrane protein 473387..474292 Aliivibrio salmonicida LFI1238 6961856 YP_002264757.1 CDS VSAL_II0422 NC_011313.1 474385 475398 R membrane protein complement(474385..475398) Aliivibrio salmonicida LFI1238 6961857 YP_002264758.1 CDS VSAL_II0423 NC_011313.1 475618 476589 D exported serine protease, trypsin elastase 475618..476589 Aliivibrio salmonicida LFI1238 6961858 YP_002264759.1 CDS VSAL_II0424 NC_011313.1 476655 477782 R Similar to Cryptococcus curvatus Delta-9 fatty acid desaturase UniProt:P79078 (555 aa) fasta scores: E()=2.6e-45, 44.371% id in 302 aa; putative fatty acid desaturase complement(476655..477782) Aliivibrio salmonicida LFI1238 6961859 YP_002264760.1 CDS VSAL_II0425 NC_011313.1 477968 478204 D hypothetical protein 477968..478204 Aliivibrio salmonicida LFI1238 6961860 YP_002264761.1 CDS VSAL_II0426 NC_011313.1 478201 479442 R putative GGDEF protein complement(478201..479442) Aliivibrio salmonicida LFI1238 6961861 YP_002264762.1 CDS VSAL_II0427 NC_011313.1 480174 481196 D Similar to Salmonella typhimurium Outer membrane pore protein E precursor PhoE UniProt:P30705 (350 aa) fasta scores: E()=6.7e-10, 24.148% id in 352 aa; putative outer membrane pore protein 480174..481196 Aliivibrio salmonicida LFI1238 6962418 YP_002264763.1 CDS VSAL_II0428 NC_011313.1 481328 484492 D integral membrane protein two-component signal transducer 481328..484492 Aliivibrio salmonicida LFI1238 6961863 YP_002264764.1 CDS rhlE NC_011313.1 484569 485825 D Similar to Escherichia coli Putative ATP-dependent RNA helicase RhlE UniProt:P25888 (454 aa) fasta scores: E()=1.6e-73, 55.303% id in 396 aa; putative ATP-dependent RNA helicase 1 484569..485825 Aliivibrio salmonicida LFI1238 6961864 YP_002264765.1 CDS VSAL_II0431 NC_011313.1 487021 488145 D hypothetical protein 487021..488145 Aliivibrio salmonicida LFI1238 6961865 YP_002264766.1 CDS VSAL_II0432 NC_011313.1 488157 489209 D membrane protein 488157..489209 Aliivibrio salmonicida LFI1238 6961866 YP_002264767.1 CDS VSAL_II0433 NC_011313.1 489281 490876 R Similar to Escherichia coli Secondary glycine betaine transporter BetU UniProt:Q71CH5 (667 aa) fasta scores: E()=8.2e-70, 41.667% id in 504 aa; transporter, BCCT family complement(489281..490876) Aliivibrio salmonicida LFI1238 6961867 YP_002264768.1 CDS VSAL_II0434 NC_011313.1 491077 492207 R Similar to Escherichia coli Inner membrane protein YibH UniProt:P0AFV0 (378 aa) fasta scores: E()=2.8e-58,45.000% id in 380 aa; secretion protein, HlyD family complement(491077..492207) Aliivibrio salmonicida LFI1238 6961868 YP_002264769.1 CDS VSAL_II0435 NC_011313.1 492207 492587 R hypothetical protein complement(492207..492587) Aliivibrio salmonicida LFI1238 6961869 YP_002264770.1 CDS VSAL_II0436 NC_011313.1 492788 494020 R membrane associated GGDEF protein complement(492788..494020) Aliivibrio salmonicida LFI1238 6961870 YP_002264771.1 CDS VSAL_II0437 NC_011313.1 494166 494525 D hypothetical protein 494166..494525 Aliivibrio salmonicida LFI1238 6961871 YP_002264772.1 CDS rnb NC_011313.1 494598 496613 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II complement(494598..496613) Aliivibrio salmonicida LFI1238 6961872 YP_002264773.1 CDS deaD NC_011313.1 496944 498869 D cold-shock DEAD box protein A (ATP-independent RNA helicase) 496944..498869 Aliivibrio salmonicida LFI1238 6962574 YP_002264774.1 CDS speG NC_011313.1 499152 499688 D spermidine N1-acetyltransferase 499152..499688 Aliivibrio salmonicida LFI1238 6962453 YP_002264775.1 CDS VSAL_II0441 NC_011313.1 500090 500770 D membrane protein 500090..500770 Aliivibrio salmonicida LFI1238 6962589 YP_002264776.1 CDS VSAL_II0442 NC_011313.1 501098 502291 R transposase complement(501098..502291) Aliivibrio salmonicida LFI1238 6961873 YP_002264777.1 CDS VSAL_II0444 NC_011313.1 504288 505172 R binding-protein-dependent transport system inner membrane protein complement(504288..505172) Aliivibrio salmonicida LFI1238 6961875 YP_002264778.1 CDS VSAL_II0445 NC_011313.1 505172 505972 R Similar to Escherichia coli Cystine-binding periplasmic protein precursor FliY UniProt:P0AEM9 (266 aa) fasta scores: E()=8.2e-18, 31.765% id in 255 aa; extracellular solute-binding protein complement(505172..505972) Aliivibrio salmonicida LFI1238 6961876 YP_002264779.1 CDS VSAL_II0446 NC_011313.1 505988 506782 R binding-protein-dependent transport system inner membrane protein complement(505988..506782) Aliivibrio salmonicida LFI1238 6961877 YP_002264780.1 CDS VSAL_II0447 NC_011313.1 506784 507530 R amino acid transporter ATP-binding protein complement(506784..507530) Aliivibrio salmonicida LFI1238 6961878 YP_002264781.1 CDS aroG NC_011313.1 507783 508835 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 507783..508835 Aliivibrio salmonicida LFI1238 6961879 YP_002264782.1 CDS VSAL_II0449 NC_011313.1 508913 510577 R hypothetical protein complement(508913..510577) Aliivibrio salmonicida LFI1238 6962432 YP_002264783.1 CDS VSAL_II0450 NC_011313.1 510699 512438 D 5'-nucleotidase 510699..512438 Aliivibrio salmonicida LFI1238 6961880 YP_002264784.1 CDS VSAL_II0451 NC_011313.1 512916 513107 D hypothetical protein 512916..513107 Aliivibrio salmonicida LFI1238 6961881 YP_002264785.1 CDS VSAL_II0452 NC_011313.1 513187 514773 R putative GGDEF protein complement(513187..514773) Aliivibrio salmonicida LFI1238 6961882 YP_002264786.1 CDS VSAL_II0454 NC_011313.1 515047 516003 D transposase 515047..516003 Aliivibrio salmonicida LFI1238 6961884 YP_002264787.1 CDS VSAL_II0455 NC_011313.1 517426 518406 R HTH-type transcriptional regulator complement(517426..518406) Aliivibrio salmonicida LFI1238 6961885 YP_002264788.1 CDS VSAL_II0456 NC_011313.1 518415 519884 R hypothetical protein complement(518415..519884) Aliivibrio salmonicida LFI1238 6961886 YP_002264789.1 CDS deoD NC_011313.1 519939 520649 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(519939..520649) Aliivibrio salmonicida LFI1238 6961887 YP_002264790.1 CDS ktrA NC_011313.1 520977 521639 D potassium uptake protein KtrA 520977..521639 Aliivibrio salmonicida LFI1238 6962454 YP_002264791.1 CDS ktrB NC_011313.1 521636 523000 D potassium uptake protein KtrB 521636..523000 Aliivibrio salmonicida LFI1238 6962503 YP_002264792.1 CDS VSAL_II0460 NC_011313.1 523092 524165 R putative mechanosensitive ion channel complement(523092..524165) Aliivibrio salmonicida LFI1238 6962504 YP_002264793.1 CDS VSAL_II0461 NC_011313.1 524184 524825 R cytochrome b561 complement(524184..524825) Aliivibrio salmonicida LFI1238 6961888 YP_002264794.1 CDS VSAL_II0462 NC_011313.1 524839 525306 R Similar to Alcaligenes xylosoxydans Cytochrome c' UniProt:P00138 (127 aa) fasta scores: E()=1.1e-10, 32.031% id in 128 aa; cytochrome c' complement(524839..525306) Aliivibrio salmonicida LFI1238 6961889 YP_002264795.1 CDS VSAL_II0463 NC_011313.1 525511 526029 D NUDIX hydrolase 525511..526029 Aliivibrio salmonicida LFI1238 6961890 YP_002264796.1 CDS VSAL_II0464 NC_011313.1 526030 526251 D hypothetical protein 526030..526251 Aliivibrio salmonicida LFI1238 6961891 YP_002264797.1 CDS VSAL_II0465 NC_011313.1 526426 527307 R transposase complement(526426..527307) Aliivibrio salmonicida LFI1238 6961892 YP_002264798.1 CDS VSAL_II0467 NC_011313.1 527865 528770 D putative aldo/keto reductase 527865..528770 Aliivibrio salmonicida LFI1238 6961894 YP_002264799.1 CDS pyrC NC_011313.1 528863 529891 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(528863..529891) Aliivibrio salmonicida LFI1238 6961895 YP_002264800.1 CDS VSAL_II0469 NC_011313.1 530094 530288 D Expression may be stress-induced; hypothetical protein 530094..530288 Aliivibrio salmonicida LFI1238 6962565 YP_002264801.1 CDS VSAL_II0470 NC_011313.1 530686 532173 R transposase complement(530686..532173) Aliivibrio salmonicida LFI1238 6962419 YP_002264802.1 CDS VSAL_II0471 NC_011313.1 532245 532592 R transposase complement(532245..532592) Aliivibrio salmonicida LFI1238 6961897 YP_002264803.1 CDS VSAL_II0472 NC_011313.1 532589 532903 R transposase complement(532589..532903) Aliivibrio salmonicida LFI1238 6961898 YP_002264804.1 CDS VSAL_II0473 NC_011313.1 533104 533262 D hypothetical protein 533104..533262 Aliivibrio salmonicida LFI1238 6961899 YP_002264805.1 CDS VSAL_II0474 NC_011313.1 533275 534396 R hypothetical protein complement(533275..534396) Aliivibrio salmonicida LFI1238 6961900 YP_002264806.1 CDS sapF NC_011313.1 534405 535172 R peptide transport system ATP-binding protein SapF complement(534405..535172) Aliivibrio salmonicida LFI1238 6961901 YP_002264807.1 CDS sapD NC_011313.1 535213 536226 R peptide transport system ATP-binding protein SapD complement(535213..536226) Aliivibrio salmonicida LFI1238 6962582 YP_002264808.1 CDS sapC NC_011313.1 536226 537113 R peptide transport system permease SapC complement(536226..537113) Aliivibrio salmonicida LFI1238 6962581 YP_002264809.1 CDS sapB NC_011313.1 537100 538062 R peptide transport system permease SapB complement(537100..538062) Aliivibrio salmonicida LFI1238 6962580 YP_002264810.1 CDS sapA NC_011313.1 538062 539687 R peptide transport periplasmic protein SapA complement(538062..539687) Aliivibrio salmonicida LFI1238 6962579 YP_002264811.1 CDS pspF NC_011313.1 539767 540789 R psp operon transcriptional activator PspF complement(539767..540789) Aliivibrio salmonicida LFI1238 6962578 YP_002264812.1 CDS pspA NC_011313.1 540997 541662 D phage shock protein A 540997..541662 Aliivibrio salmonicida LFI1238 6962561 YP_002264813.1 CDS pspB NC_011313.1 541696 541920 D acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 541696..541920 Aliivibrio salmonicida LFI1238 6962558 YP_002264814.1 CDS pspC NC_011313.1 541920 542306 D phage shock protein C 541920..542306 Aliivibrio salmonicida LFI1238 6962559 YP_002264815.1 CDS VSAL_II0484 NC_011313.1 542442 543839 D Expression may be stress-induced; hypothetical protein 542442..543839 Aliivibrio salmonicida LFI1238 6962560 YP_002264816.1 CDS VSAL_II0485 NC_011313.1 543836 544861 D hypothetical protein 543836..544861 Aliivibrio salmonicida LFI1238 6961902 YP_002264817.1 CDS thiD NC_011313.1 545136 545990 D catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 545136..545990 Aliivibrio salmonicida LFI1238 6962420 YP_002264818.1 CDS VSAL_II0487 NC_011313.1 545990 546763 D ABC transporter ATP-binding protein 545990..546763 Aliivibrio salmonicida LFI1238 6962602 YP_002264819.1 CDS VSAL_II0488 NC_011313.1 546756 547574 D putative binding protein-dependent transport system, membrane component 546756..547574 Aliivibrio salmonicida LFI1238 6961904 YP_002264820.1 CDS VSAL_II0489 NC_011313.1 547602 548549 D hypothetical protein 547602..548549 Aliivibrio salmonicida LFI1238 6961905 YP_002264821.1 CDS VSAL_II0490 NC_011313.1 548583 549245 D Similar to Bacillus subtilis Thiaminase-2 TenA UniProt:P25052 (236 aa) fasta scores: E()=5.4e-10, 28.241% id in 216 aa; putative thiaminase (transcriptional activator TenA) 548583..549245 Aliivibrio salmonicida LFI1238 6961906 YP_002264822.1 CDS thiM NC_011313.1 549309 550103 D catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 549309..550103 Aliivibrio salmonicida LFI1238 6961907 YP_002264823.1 CDS thiE NC_011313.1 550113 550733 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 550113..550733 Aliivibrio salmonicida LFI1238 6962604 YP_002264824.1 CDS VSAL_II0493 NC_011313.1 550775 551557 R membrane associated GGDEF protein complement(550775..551557) Aliivibrio salmonicida LFI1238 6962603 YP_002264825.1 CDS VSAL_II0495 NC_011313.1 553071 553952 R transposase complement(553071..553952) Aliivibrio salmonicida LFI1238 6961909 YP_002264826.1 CDS VSAL_II0496 NC_011313.1 554101 555219 D glycine cleavage system T protein 554101..555219 Aliivibrio salmonicida LFI1238 6961910 YP_002264827.1 CDS VSAL_II0497 NC_011313.1 555892 556572 D hypothetical protein 555892..556572 Aliivibrio salmonicida LFI1238 6961911 YP_002264828.1 CDS VSAL_II0498 NC_011313.1 556696 557604 R putative chemotaxis protein, CheW-like complement(556696..557604) Aliivibrio salmonicida LFI1238 6961912 YP_002264829.1 CDS ppiC NC_011313.1 557756 558034 D peptidyl-prolyl cis-trans isomerase C 557756..558034 Aliivibrio salmonicida LFI1238 6961913 YP_002264830.1 CDS gsk NC_011313.1 558125 559429 R inosine-guanosine kinase complement(558125..559429) Aliivibrio salmonicida LFI1238 6962557 YP_002264831.1 CDS guaC NC_011313.1 559881 560924 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 559881..560924 Aliivibrio salmonicida LFI1238 6962483 YP_002264832.1 CDS VSAL_II0503 NC_011313.1 561922 563085 D Similar to Acetobacter pasteurianus ApaLI methylase UniProt:P70750 (429 aa) fasta scores: E()=2.6e-20, 29.815% id in 379 aa; putative C-5 cytosine-specific DNA methylase 561922..563085 Aliivibrio salmonicida LFI1238 6961914 YP_002264833.1 CDS VSAL_II0504 NC_011313.1 563172 566165 D Similar to Bradyrhizobium sp. btai1 ATP-binding region, ATPase-like (Fragment) UniProt:Q35DF7 (804 aa) fasta scores: E()=6.9e-52, 33.213% id in 828 aa; signal transduction protein, histidine kinase 563172..566165 Aliivibrio salmonicida LFI1238 6961915 YP_002264834.1 CDS VSAL_II0505 NC_011313.1 566162 567949 D hypothetical protein 566162..567949 Aliivibrio salmonicida LFI1238 6961916 YP_002264835.1 CDS VSAL_II0506 NC_011313.1 568020 568463 R Similar to Vibrio phage k139 CI UniProt:Q9XJF9 (215 aa) fasta scores: E()=2.5e-10, 48.113% id in 106 aa; hypothetical protein complement(568020..568463) Aliivibrio salmonicida LFI1238 6961917 YP_002264836.1 CDS VSAL_II0507 NC_011313.1 568679 568921 D hypothetical protein 568679..568921 Aliivibrio salmonicida LFI1238 6961918 YP_002264837.1 CDS VSAL_II0508 NC_011313.1 568940 569344 D hypothetical protein 568940..569344 Aliivibrio salmonicida LFI1238 6961919 YP_002264838.1 CDS VSAL_II0509 NC_011313.1 569488 569733 R hypothetical protein complement(569488..569733) Aliivibrio salmonicida LFI1238 6961920 YP_002264839.1 CDS VSAL_II0510 NC_011313.1 570060 570356 D hypothetical protein 570060..570356 Aliivibrio salmonicida LFI1238 6961921 YP_002264840.1 CDS sodC NC_011313.1 570635 571147 D [Cu-Zn]; superoxide dismutase 570635..571147 Aliivibrio salmonicida LFI1238 6961922 YP_002264841.1 CDS VSAL_II0512 NC_011313.1 571202 571660 D hypothetical protein 571202..571660 Aliivibrio salmonicida LFI1238 6962584 YP_002264842.1 CDS VSAL_II0513 NC_011313.1 571862 573202 D membrane associated GGDEF protein 571862..573202 Aliivibrio salmonicida LFI1238 6961923 YP_002264843.1 CDS VSAL_II0515 NC_011313.1 573451 574938 R transposase complement(573451..574938) Aliivibrio salmonicida LFI1238 6961925 YP_002264844.1 CDS VSAL_II0516 NC_011313.1 575010 575357 R transposase complement(575010..575357) Aliivibrio salmonicida LFI1238 6961926 YP_002264845.1 CDS VSAL_II0517 NC_011313.1 575354 575668 R transposase complement(575354..575668) Aliivibrio salmonicida LFI1238 6961927 YP_002264846.1 CDS htrB NC_011313.1 576580 577536 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 576580..577536 Aliivibrio salmonicida LFI1238 6961928 YP_002264847.1 CDS VSAL_II0519 NC_011313.1 577788 578744 D transposase 577788..578744 Aliivibrio salmonicida LFI1238 6962488 YP_002264848.1 CDS tktA NC_011313.1 578747 580738 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(578747..580738) Aliivibrio salmonicida LFI1238 6961929 YP_002264849.1 CDS talB NC_011313.1 580922 581872 R transaldolase B complement(580922..581872) Aliivibrio salmonicida LFI1238 6962605 YP_002264850.1 CDS VSAL_II0522 NC_011313.1 582242 583948 R hypothetical protein complement(582242..583948) Aliivibrio salmonicida LFI1238 6962600 YP_002264851.1 CDS VSAL_II0523 NC_011313.1 583942 585801 R hypothetical protein complement(583942..585801) Aliivibrio salmonicida LFI1238 6961930 YP_002264852.1 CDS VSAL_II0524 NC_011313.1 585794 586756 R hypothetical protein complement(585794..586756) Aliivibrio salmonicida LFI1238 6961931 YP_002264853.1 CDS VSAL_II0525 NC_011313.1 586749 587300 R hypothetical protein complement(586749..587300) Aliivibrio salmonicida LFI1238 6961932 YP_002264854.1 CDS VSAL_II0526 NC_011313.1 587300 588259 R hypothetical protein complement(587300..588259) Aliivibrio salmonicida LFI1238 6961933 YP_002264855.1 CDS VSAL_II0527 NC_011313.1 588309 589265 R ATPase complement(588309..589265) Aliivibrio salmonicida LFI1238 6961934 YP_002264856.1 CDS VSAL_II0529 NC_011313.1 590879 591079 D hypothetical protein 590879..591079 Aliivibrio salmonicida LFI1238 6962487 YP_002264857.1 CDS VSAL_II0530 NC_011313.1 591174 591878 R hypothetical protein complement(591174..591878) Aliivibrio salmonicida LFI1238 6961936 YP_002264858.1 CDS VSAL_II0531 NC_011313.1 591956 592453 D Similar to Escherichia coli Esterase YdiI UniProt:P77781 (136 aa) fasta scores: E()=5.3e-23, 48.148% id in 135 aa. The CDS appears to be truncated at the N-terminus; putative thioesterase 591956..592453 Aliivibrio salmonicida LFI1238 6961937 YP_002264859.1 CDS VSAL_II0532 NC_011313.1 592475 593299 D hypothetical protein 592475..593299 Aliivibrio salmonicida LFI1238 6961938 YP_002264860.1 CDS VSAL_II0533 NC_011313.1 593313 593474 D hypothetical protein 593313..593474 Aliivibrio salmonicida LFI1238 6961939 YP_002264861.1 CDS intIA NC_011313.1 593499 594482 R site-specific recombinase IntIA complement(593499..594482) Aliivibrio salmonicida LFI1238 6961940 YP_002264862.1 CDS VSAL_II0536 NC_011313.1 598055 598810 D Similar to Vibrio fischeri orfc668-5 (superintegron p668 insert) UniProt:Q84B85 (251 aa) fasta scores: E()=4.5e-83, 99.203% id in 251 aa; membrane protein phage gene 598055..598810 Aliivibrio salmonicida LFI1238 6961941 YP_002264863.1 CDS VSAL_II0537 NC_011313.1 599012 599725 D Weakly similar to Streptococcus suis seps16C UniProt:Q5H807 (362 aa) fasta scores: E()=2.6e-06, 27.711% id in 166 aa; hypothetical protein 599012..599725 Aliivibrio salmonicida LFI1238 6961942 YP_002264864.1 CDS VSAL_II0538 NC_011313.1 599862 600317 D putative acetyltransferase phage gene 599862..600317 Aliivibrio salmonicida LFI1238 6961943 YP_002264865.1 CDS VSAL_II0539 NC_011313.1 600422 600817 D hypothetical protein 600422..600817 Aliivibrio salmonicida LFI1238 6961944 YP_002264866.1 CDS VSAL_II0540 NC_011313.1 600814 601344 D hypothetical protein 600814..601344 Aliivibrio salmonicida LFI1238 6961945 YP_002264867.1 CDS VSAL_II0541 NC_011313.1 601353 602048 D hypothetical protein 601353..602048 Aliivibrio salmonicida LFI1238 6961946 YP_002264868.1 CDS VSAL_II0542 NC_011313.1 602236 602490 D hypothetical phage-related protein 602236..602490 Aliivibrio salmonicida LFI1238 6961947 YP_002264869.1 CDS VSAL_II0543 NC_011313.1 602481 602795 D putative plasmid stabilisation system protein 602481..602795 Aliivibrio salmonicida LFI1238 6961948 YP_002264870.1 CDS VSAL_II0544 NC_011313.1 603039 603389 D hypothetical protein 603039..603389 Aliivibrio salmonicida LFI1238 6961949 YP_002264871.1 CDS VSAL_II0545 NC_011313.1 603629 604099 D hypothetical protein 603629..604099 Aliivibrio salmonicida LFI1238 6961950 YP_002264872.1 CDS VSAL_II0546 NC_011313.1 604092 604694 D Similar to Escherichia coli Cell filamentation protein fic UniProt:P20605 (200 aa) fasta scores: E()=2.5e-30, 43.878% id in 196 aa; putative Fic-related phage protein 604092..604694 Aliivibrio salmonicida LFI1238 6961951 YP_002264873.1 CDS VSAL_II0547 NC_011313.1 605386 605655 R putative plasmid stabilisation system protein complement(605386..605655) Aliivibrio salmonicida LFI1238 6961952 YP_002264874.1 CDS VSAL_II0548 NC_011313.1 605648 605926 R putative RelB antitoxin complement(605648..605926) Aliivibrio salmonicida LFI1238 6961953 YP_002264875.1 CDS VSAL_II0549 NC_011313.1 606153 607745 R hypothetical protein complement(606153..607745) Aliivibrio salmonicida LFI1238 6961954 YP_002264876.1 CDS VSAL_II0550 NC_011313.1 607773 608144 R hypothetical protein complement(607773..608144) Aliivibrio salmonicida LFI1238 6961955 YP_002264877.1 CDS VSAL_II0551 NC_011313.1 608314 608508 R hypothetical protein complement(608314..608508) Aliivibrio salmonicida LFI1238 6961956 YP_002264878.1 CDS VSAL_II0552 NC_011313.1 608674 608847 D No significant database matches. Expression may be regulated by Fur; hypothetical protein 608674..608847 Aliivibrio salmonicida LFI1238 6961957 YP_002264879.1 CDS VSAL_II0553 NC_011313.1 609002 609886 D hypothetical protein 609002..609886 Aliivibrio salmonicida LFI1238 6961958 YP_002264880.1 CDS yefM NC_011313.1 610662 610913 D antitoxin 610662..610913 Aliivibrio salmonicida LFI1238 6961959 YP_002264881.1 CDS yoeB NC_011313.1 610910 611170 D toxin 610910..611170 Aliivibrio salmonicida LFI1238 6962616 YP_002264882.1 CDS VSAL_II0556 NC_011313.1 611499 611681 D hypothetical protein 611499..611681 Aliivibrio salmonicida LFI1238 6962618 YP_002264883.1 CDS VSAL_II0557 NC_011313.1 611947 613092 D transposase 611947..613092 Aliivibrio salmonicida LFI1238 6961960 YP_002264884.1 CDS VSAL_II0558 NC_011313.1 613475 613732 D hypothetical protein 613475..613732 Aliivibrio salmonicida LFI1238 6961961 YP_002264885.1 CDS VSAL_II0559 NC_011313.1 613740 614264 D hypothetical protein 613740..614264 Aliivibrio salmonicida LFI1238 6961962 YP_002264886.1 CDS VSAL_II0560 NC_011313.1 614957 615361 D hypothetical protein 614957..615361 Aliivibrio salmonicida LFI1238 6961963 YP_002264887.1 CDS VSAL_II0561 NC_011313.1 615528 615839 D transposase 615528..615839 Aliivibrio salmonicida LFI1238 6961964 YP_002264888.1 CDS VSAL_II0562 NC_011313.1 615836 616672 D CDS contains a rare Leucine start codon (TTA); transposase 615836..616672 Aliivibrio salmonicida LFI1238 6961965 YP_002264889.1 CDS VSAL_II0564 NC_011313.1 617151 617399 D hypothetical protein 617151..617399 Aliivibrio salmonicida LFI1238 6961967 YP_002264890.1 CDS rhlE NC_011313.1 617633 618961 D putative ATP-dependent RNA helicase RhlE 617633..618961 Aliivibrio salmonicida LFI1238 6961968 YP_002264891.1 CDS VSAL_II0566 NC_011313.1 619300 619827 D hypothetical protein 619300..619827 Aliivibrio salmonicida LFI1238 6962572 YP_002264892.1 CDS mrdB NC_011313.1 619894 620976 R rod shape-determining protein roda complement(619894..620976) Aliivibrio salmonicida LFI1238 6961969 YP_002264893.1 CDS VSAL_II0568 NC_011313.1 621060 621635 R hypothetical protein complement(621060..621635) Aliivibrio salmonicida LFI1238 6962535 YP_002264894.1 CDS VSAL_II0569 NC_011313.1 621662 623347 R C-terminal part is similar to Escherichia coli Ribosomal large subunit pseudouridine synthase A RluA UniProt:P0AA37 (218 aa) fasta scores: E()=3e-25, 43.396% id in 212 aa. CDS is extended at the N-terminus in comparison to the Escherichia coli orthologue; putative RNA pseudouridylate synthase complement(621662..623347) Aliivibrio salmonicida LFI1238 6961970 YP_002264895.1 CDS VSAL_II0570 NC_011313.1 623349 625034 R C-terminal part is similar to Escherichia coli Ribosomal large subunit pseudouridine synthase A RluA UniProt:P0AA37 (218 aa) fasta scores: E()=3.1e-26, 44.292% id in 219 aa. CDS is extended at the N-terminus in comparison to the Escherichia coli orthologue; putative RNA pseudouridylate synthase complement(623349..625034) Aliivibrio salmonicida LFI1238 6961971 YP_002264896.1 CDS VSAL_II0571 NC_011313.1 625154 625390 R putative RNA binding protein complement(625154..625390) Aliivibrio salmonicida LFI1238 6961972 YP_002264897.1 CDS VSAL_II0572 NC_011313.1 625543 626481 R outer membrane protein porin complement(625543..626481) Aliivibrio salmonicida LFI1238 6961973 YP_002264898.1 CDS VSAL_II0573 NC_011313.1 626650 627519 R Expression may be regulated by Fur; hypothetical protein complement(626650..627519) Aliivibrio salmonicida LFI1238 6961974 YP_002264899.1 CDS anmK NC_011313.1 627554 628657 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(627554..628657) Aliivibrio salmonicida LFI1238 6961975 YP_002264900.1 CDS nagZ NC_011313.1 628857 629852 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 628857..629852 Aliivibrio salmonicida LFI1238 6961976 YP_002264901.1 CDS treR NC_011313.1 630004 630948 D regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 630004..630948 Aliivibrio salmonicida LFI1238 6962542 YP_002264902.1 CDS treB NC_011313.1 631097 632521 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunit IIBC 631097..632521 Aliivibrio salmonicida LFI1238 6962613 YP_002264903.1 CDS treA NC_011313.1 632600 634270 D trehalose-6-phosphate hydrolase 632600..634270 Aliivibrio salmonicida LFI1238 6962612 YP_002264904.1 CDS pykA NC_011313.1 634373 635818 R pyruvate kinase II complement(634373..635818) Aliivibrio salmonicida LFI1238 6962611 YP_002264905.1 CDS VSAL_II0580 NC_011313.1 635923 636603 R hypothetical protein complement(635923..636603) Aliivibrio salmonicida LFI1238 6962564 YP_002264906.1 CDS mlc NC_011313.1 636751 638001 D protein mlc (making large colonies protein) 636751..638001 Aliivibrio salmonicida LFI1238 6961977 YP_002264907.1 CDS gly NC_011313.1 638108 639208 R L-allo-threonine aldolase complement(638108..639208) Aliivibrio salmonicida LFI1238 6962530 YP_002264908.1 CDS VSAL_II0583 NC_011313.1 639479 641119 D hypothetical protein 639479..641119 Aliivibrio salmonicida LFI1238 6962480 YP_002264909.1 CDS yieM NC_011313.1 641147 642595 D contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 641147..642595 Aliivibrio salmonicida LFI1238 6961978 YP_002264910.1 CDS VSAL_II0585 NC_011313.1 642604 642849 R hypothetical protein complement(642604..642849) Aliivibrio salmonicida LFI1238 6961979 YP_002264911.1 CDS VSAL_II0586 NC_011313.1 642897 643334 R hypothetical protein complement(642897..643334) Aliivibrio salmonicida LFI1238 6961980 YP_002264912.1 CDS VSAL_II0587 NC_011313.1 643554 644192 D outer membrane protein, OmpA family 643554..644192 Aliivibrio salmonicida LFI1238 6961981 YP_002264913.1 CDS VSAL_II0588 NC_011313.1 644241 644717 R putative lipoprotein complement(644241..644717) Aliivibrio salmonicida LFI1238 6961982 YP_002264914.1 CDS VSAL_II0589 NC_011313.1 645096 645518 D Expression may be stress-induced; hypothetical protein 645096..645518 Aliivibrio salmonicida LFI1238 6961983 YP_002264915.1 CDS VSAL_II0590 NC_011313.1 645567 646055 D hypothetical protein 645567..646055 Aliivibrio salmonicida LFI1238 6961984 YP_002264916.1 CDS VSAL_II0591 NC_011313.1 646065 647855 D putative membrane associated signaling protein 646065..647855 Aliivibrio salmonicida LFI1238 6961985 YP_002264917.1 CDS VSAL_II0592 NC_011313.1 647972 649339 R membrane protein nucleoside transporter complement(647972..649339) Aliivibrio salmonicida LFI1238 6961986 YP_002264918.1 CDS VSAL_II0593 NC_011313.1 649611 651257 R hypothetical protein complement(649611..651257) Aliivibrio salmonicida LFI1238 6961987 YP_002264919.1 CDS VSAL_II0594 NC_011313.1 651448 651681 D hypothetical protein 651448..651681 Aliivibrio salmonicida LFI1238 6961988 YP_002264920.1 CDS VSAL_II0595 NC_011313.1 651860 653260 D putative exported oxidoreductase 651860..653260 Aliivibrio salmonicida LFI1238 6961989 YP_002264921.1 CDS VSAL_II0596 NC_011313.1 653535 653906 D hypothetical protein 653535..653906 Aliivibrio salmonicida LFI1238 6961990 YP_002264922.1 CDS VSAL_II0597 NC_011313.1 653915 654613 R hypothetical protein complement(653915..654613) Aliivibrio salmonicida LFI1238 6961991 YP_002264923.1 CDS VSAL_II0598 NC_011313.1 654831 656069 R MFS transporter complement(654831..656069) Aliivibrio salmonicida LFI1238 6961992 YP_002264924.1 CDS VSAL_II0599 NC_011313.1 656379 656930 D membrane protein 656379..656930 Aliivibrio salmonicida LFI1238 6961993 YP_002264925.1 CDS VSAL_II0600 NC_011313.1 657267 657638 D membrane protein 657267..657638 Aliivibrio salmonicida LFI1238 6961994 YP_002264926.1 CDS VSAL_II0601 NC_011313.1 657737 658771 D putative response regulator 657737..658771 Aliivibrio salmonicida LFI1238 6961995 YP_002264927.1 CDS VSAL_II0602 NC_011313.1 658772 659209 D hypothetical protein 658772..659209 Aliivibrio salmonicida LFI1238 6961996 YP_002264928.1 CDS VSAL_II0603 NC_011313.1 659254 659562 R hypothetical protein complement(659254..659562) Aliivibrio salmonicida LFI1238 6961997 YP_002264929.1 CDS VSAL_II0604 NC_011313.1 659663 660076 R hypothetical protein complement(659663..660076) Aliivibrio salmonicida LFI1238 6961998 YP_002264930.1 CDS VSAL_II0605 NC_011313.1 660232 660897 D hypothetical protein 660232..660897 Aliivibrio salmonicida LFI1238 6961999 YP_002264931.1 CDS VSAL_II0606 NC_011313.1 660897 661181 D hypothetical protein 660897..661181 Aliivibrio salmonicida LFI1238 6962000 YP_002264932.1 CDS nadE NC_011313.1 661178 662008 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(661178..662008) Aliivibrio salmonicida LFI1238 6962001 YP_002264933.1 CDS VSAL_II0608 NC_011313.1 662172 662681 D catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP; nicotinic acid mononucleotide adenylyltransferase 662172..662681 Aliivibrio salmonicida LFI1238 6962540 YP_002264934.1 CDS VSAL_II0609 NC_011313.1 662688 663200 D hypothetical protein 662688..663200 Aliivibrio salmonicida LFI1238 6962002 YP_002264935.1 CDS VSAL_II0610 NC_011313.1 663231 663851 R hypothetical protein complement(663231..663851) Aliivibrio salmonicida LFI1238 6962003 YP_002264936.1 CDS VSAL_II0611 NC_011313.1 664035 665138 D Expression may be stress-induced; hypothetical protein 664035..665138 Aliivibrio salmonicida LFI1238 6962004 YP_002264937.1 CDS VSAL_II0613 NC_011313.1 666095 666865 R hypothetical protein complement(666095..666865) Aliivibrio salmonicida LFI1238 6962006 YP_002264938.1 CDS VSAL_II0614 NC_011313.1 666910 667119 D cold shock-like protein 666910..667119 Aliivibrio salmonicida LFI1238 6962007 YP_002264939.1 CDS VSAL_II0615 NC_011313.1 667189 667485 R hypothetical protein complement(667189..667485) Aliivibrio salmonicida LFI1238 6962008 YP_002264940.1 CDS luxT NC_011313.1 667949 668410 D HTH-type transcriptional regulator LuxT 667949..668410 Aliivibrio salmonicida LFI1238 6962009 YP_002264941.1 CDS VSAL_II0618 NC_011313.1 669896 670876 D putative secretion protein, HlyD family 669896..670876 Aliivibrio salmonicida LFI1238 6962010 YP_002264942.1 CDS VSAL_II0619 NC_011313.1 670889 672025 D membrane protein 670889..672025 Aliivibrio salmonicida LFI1238 6962011 YP_002264943.1 CDS VSAL_II0620 NC_011313.1 672018 673154 D ABC-2 type transporter 672018..673154 Aliivibrio salmonicida LFI1238 6962012 YP_002264944.1 CDS VSAL_II0621 NC_011313.1 673264 673821 D putative outer membrane protein, OmpA family 673264..673821 Aliivibrio salmonicida LFI1238 6962013 YP_002264945.1 CDS VSAL_II0622 NC_011313.1 673933 674211 D hypothetical protein 673933..674211 Aliivibrio salmonicida LFI1238 6962014 YP_002264946.1 CDS pntA NC_011313.1 674471 676027 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 674471..676027 Aliivibrio salmonicida LFI1238 6962015 YP_002264947.1 CDS pntB NC_011313.1 676039 677415 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 676039..677415 Aliivibrio salmonicida LFI1238 6962553 YP_002264948.1 CDS VSAL_II0625 NC_011313.1 677663 678259 D hypothetical protein 677663..678259 Aliivibrio salmonicida LFI1238 6962554 YP_002264949.1 CDS VSAL_II0626 NC_011313.1 678341 678907 R PhnA protein complement(678341..678907) Aliivibrio salmonicida LFI1238 6962016 YP_002264950.1 CDS VSAL_II0627 NC_011313.1 679323 680186 D hypothetical protein 679323..680186 Aliivibrio salmonicida LFI1238 6962017 YP_002264951.1 CDS VSAL_II0628 NC_011313.1 680242 680706 R hypothetical protein complement(680242..680706) Aliivibrio salmonicida LFI1238 6962018 YP_002264952.1 CDS rstR NC_011313.1 681509 681685 R phage replication repressor RstR complement(681509..681685) Aliivibrio salmonicida LFI1238 6962020 YP_002264953.1 CDS VSAL_II0631 NC_011313.1 681997 683244 D phage replication and integration protein 681997..683244 Aliivibrio salmonicida LFI1238 6962576 YP_002264954.1 CDS rstR NC_011313.1 683521 683697 R phage replication repressor RstR complement(683521..683697) Aliivibrio salmonicida LFI1238 6962022 YP_002264955.1 CDS VSAL_II0634 NC_011313.1 684009 685256 D phage replication protein 684009..685256 Aliivibrio salmonicida LFI1238 6962577 YP_002264956.1 CDS VSAL_II0636 NC_011313.1 686043 686354 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(686043..686354) Aliivibrio salmonicida LFI1238 6962024 YP_002264957.1 CDS VSAL_II0637 NC_011313.1 686398 686748 R hypothetical protein complement(686398..686748) Aliivibrio salmonicida LFI1238 6962025 YP_002264958.1 CDS VSAL_II0638 NC_011313.1 686913 687830 D Similar to Selenomonas ruminantium Recombinase XerD UniProt:Q845Z5 (328 aa) fasta scores: E()=1.1e-08, 28.571% id in 287 aa; putative phage recombinase 686913..687830 Aliivibrio salmonicida LFI1238 6962026 YP_002264959.1 CDS ddl NC_011313.1 687846 688877 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(687846..688877) Aliivibrio salmonicida LFI1238 6962027 YP_002264960.1 CDS VSAL_II0640 NC_011313.1 688888 689445 R putative lipoprotein, may be involved in cell division complement(688888..689445) Aliivibrio salmonicida LFI1238 6962028 YP_002264961.1 CDS VSAL_II0641 NC_011313.1 689689 692373 D putative acetyltransferase 689689..692373 Aliivibrio salmonicida LFI1238 6962029 YP_002264962.1 CDS VSAL_II0643 NC_011313.1 694196 695077 R transposase complement(694196..695077) Aliivibrio salmonicida LFI1238 6962031 YP_002264963.1 CDS VSAL_II0644 NC_011313.1 695586 695864 R hypothetical protein complement(695586..695864) Aliivibrio salmonicida LFI1238 6962032 YP_002264964.1 CDS VSAL_II0645 NC_011313.1 696082 696309 D hypothetical protein 696082..696309 Aliivibrio salmonicida LFI1238 6962033 YP_002264965.1 CDS mogA NC_011313.1 696339 696875 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(696339..696875) Aliivibrio salmonicida LFI1238 6962034 YP_002264966.1 CDS VSAL_II0648 NC_011313.1 698336 698488 R hypothetical protein complement(698336..698488) Aliivibrio salmonicida LFI1238 6962035 YP_002264967.1 CDS VSAL_II0649 NC_011313.1 698488 699390 R hypothetical protein complement(698488..699390) Aliivibrio salmonicida LFI1238 6962036 YP_002264968.1 CDS VSAL_II0650 NC_011313.1 699392 699997 R Possible alternative translational start site; response regulator complement(699392..699997) Aliivibrio salmonicida LFI1238 6962037 YP_002264969.1 CDS VSAL_II0651 NC_011313.1 700026 701501 R membrane associated signal transduction protein,histidine kinase complement(700026..701501) Aliivibrio salmonicida LFI1238 6962038 YP_002264970.1 CDS VSAL_II0652 NC_011313.1 701942 702931 D hypothetical protein 701942..702931 Aliivibrio salmonicida LFI1238 6962039 YP_002264971.1 CDS VSAL_II0653 NC_011313.1 702984 704693 R putative extracellular solute-binding protein complement(702984..704693) Aliivibrio salmonicida LFI1238 6962040 YP_002264972.1 CDS VSAL_II0654 NC_011313.1 704823 705620 D HTH-type regulatory protein, AraC family 704823..705620 Aliivibrio salmonicida LFI1238 6962041 YP_002264973.1 CDS VSAL_II0656 NC_011313.1 706576 706857 D hypothetical protein 706576..706857 Aliivibrio salmonicida LFI1238 6962043 YP_002264974.1 CDS VSAL_II0657 NC_011313.1 706964 708316 R Similar to Escherichia coli ATP-dependent RNA helicase SrmB UniProt:P21507 (444 aa) fasta scores: E()=5.9e-47, 37.055% id in 421 aa; ATP-dependent RNA helicase complement(706964..708316) Aliivibrio salmonicida LFI1238 6962044 YP_002264975.1 CDS VSAL_II0658 NC_011313.1 708479 709306 D hypothetical protein 708479..709306 Aliivibrio salmonicida LFI1238 6962045 YP_002264976.1 CDS VSAL_II0659 NC_011313.1 709368 710291 R outer membrane protein, OmpA family complement(709368..710291) Aliivibrio salmonicida LFI1238 6962046 YP_002264977.1 CDS VSAL_II0660 NC_011313.1 710294 713809 R hypothetical protein complement(710294..713809) Aliivibrio salmonicida LFI1238 6962047 YP_002264978.1 CDS VSAL_II0661 NC_011313.1 713852 723934 R hypothetical protein complement(713852..723934) Aliivibrio salmonicida LFI1238 6962048 YP_002264979.1 CDS VSAL_II0662 NC_011313.1 724246 725046 D Expression may be stress-induced; putative signaling protein 724246..725046 Aliivibrio salmonicida LFI1238 6962049 YP_002264980.1 CDS VSAL_II0663 NC_011313.1 725049 725915 R integral membrane protein transmembrane transporter complement(725049..725915) Aliivibrio salmonicida LFI1238 6962050 YP_002264981.1 CDS VSAL_II0664 NC_011313.1 726082 726690 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(726082..726690) Aliivibrio salmonicida LFI1238 6962051 YP_002264982.1 CDS VSAL_II0665 NC_011313.1 726700 728076 R gluconate permease complement(726700..728076) Aliivibrio salmonicida LFI1238 6962052 YP_002264983.1 CDS idnK NC_011313.1 728236 728760 D thermosensitive gluconokinase 728236..728760 Aliivibrio salmonicida LFI1238 6962053 YP_002264984.1 CDS edd NC_011313.1 728771 730570 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 728771..730570 Aliivibrio salmonicida LFI1238 6962494 YP_002264985.1 CDS gntR NC_011313.1 730665 731678 R HTH-type transcriptional regulator GntR complement(730665..731678) Aliivibrio salmonicida LFI1238 6962456 YP_002264986.1 CDS rbgA NC_011313.1 731955 732890 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 731955..732890 Aliivibrio salmonicida LFI1238 6962482 YP_002264987.1 CDS VSAL_II0670 NC_011313.1 732967 733959 R putative cobalamin synthesis protein complement(732967..733959) Aliivibrio salmonicida LFI1238 6962054 YP_002264988.1 CDS vcaM NC_011313.1 734170 735993 D Expression may be regulated by Fur; ABC-type multidrug efflux pump, ATP-binding component 734170..735993 Aliivibrio salmonicida LFI1238 6962055 YP_002264989.1 CDS VSAL_II0672 NC_011313.1 736246 737157 D hypothetical protein 736246..737157 Aliivibrio salmonicida LFI1238 6962614 YP_002264990.1 CDS gltS NC_011313.1 737377 738600 D sodium/glutamate symport carrier protein (glutamate permease) 737377..738600 Aliivibrio salmonicida LFI1238 6962056 YP_002264991.1 CDS gltS NC_011313.1 738870 740093 D sodium/glutamate symport carrier protein (glutamate permease) 738870..740093 Aliivibrio salmonicida LFI1238 6962478 YP_002264992.1 CDS VSAL_II0675 NC_011313.1 740171 741799 R Expression may be regulated by Fur; methyl-accepting chemotaxis protein complement(740171..741799) Aliivibrio salmonicida LFI1238 6962479 YP_002264993.1 CDS VSAL_II0676 NC_011313.1 742420 743463 R hypothetical protein complement(742420..743463) Aliivibrio salmonicida LFI1238 6962057 YP_002264994.1 CDS VSAL_II0677 NC_011313.1 743469 744746 R Similar to Escherichia coli Biofilm PGA synthesis N-glycosyltransferase PgaC UniProt:P75905 (441 aa) fasta scores: E()=9.6e-16, 25.234% id in 428 aa. Expression may be regulated by Fur; putative glycosyl transferase complement(743469..744746) Aliivibrio salmonicida LFI1238 6962058 YP_002264995.1 CDS VSAL_II0678 NC_011313.1 744934 745314 R hypothetical protein complement(744934..745314) Aliivibrio salmonicida LFI1238 6962059 YP_002264996.1 CDS VSAL_II0680 NC_011313.1 746329 746619 R hypothetical protein complement(746329..746619) Aliivibrio salmonicida LFI1238 6962061 YP_002264997.1 CDS VSAL_II0681 NC_011313.1 746766 746990 R hypothetical protein complement(746766..746990) Aliivibrio salmonicida LFI1238 6962062 YP_002264998.1 CDS VSAL_II0682 NC_011313.1 747165 747587 D transposase 747165..747587 Aliivibrio salmonicida LFI1238 6962063 YP_002264999.1 CDS VSAL_II0683 NC_011313.1 747605 748171 D transposase 747605..748171 Aliivibrio salmonicida LFI1238 6962064 YP_002265000.1 CDS VSAL_II0684 NC_011313.1 748667 749335 D Similar to Escherichia coli Inner membrane protein YqjA UniProt:P0AA63 (EMBL:D13328 (220 aa) fasta scores: E()=8.8e-25, 38.967% id in 213 aa. Expression may be regulated by Fur; inner membrane protein 748667..749335 Aliivibrio salmonicida LFI1238 6962065 YP_002265001.1 CDS gnd NC_011313.1 749393 750841 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(749393..750841) Aliivibrio salmonicida LFI1238 6962066 YP_002265002.1 CDS pgl NC_011313.1 750877 751599 R 6-phosphogluconolactonase complement(750877..751599) Aliivibrio salmonicida LFI1238 6962481 YP_002265003.1 CDS zwf NC_011313.1 751596 753098 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(751596..753098) Aliivibrio salmonicida LFI1238 6962550 YP_002265004.1 CDS VSAL_II0688 NC_011313.1 753249 754295 R hypothetical protein complement(753249..754295) Aliivibrio salmonicida LFI1238 6962619 YP_002265005.1 CDS VSAL_II0689 NC_011313.1 754329 755210 R transposase complement(754329..755210) Aliivibrio salmonicida LFI1238 6962067 YP_002265006.1 CDS VSAL_II0690 NC_011313.1 755308 756621 R Similar to Escherichia coli Biofilm PGA synthesis N-glycosyltransferase PgaC UniProt:P75905 (441 aa) fasta scores: E()=4.6e-16, 25.455% id in 440 aa; putative glucosyl transferase complement(755308..756621) Aliivibrio salmonicida LFI1238 6962068 YP_002265007.1 CDS VSAL_II0691 NC_011313.1 756614 757972 R hypothetical protein complement(756614..757972) Aliivibrio salmonicida LFI1238 6962069 YP_002265008.1 CDS lolE NC_011313.1 758106 759350 R part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE complement(758106..759350) Aliivibrio salmonicida LFI1238 6962070 YP_002265009.1 CDS lolD NC_011313.1 759350 760066 R lipoprotein-releasing system ATP-binding protein complement(759350..760066) Aliivibrio salmonicida LFI1238 6962507 YP_002265010.1 CDS lolC NC_011313.1 760059 761267 R lipoprotein releasing system, transmembrane protein complement(760059..761267) Aliivibrio salmonicida LFI1238 6962506 YP_002265011.1 CDS VSAL_II0695 NC_011313.1 761451 762020 D hypothetical protein 761451..762020 Aliivibrio salmonicida LFI1238 6962505 YP_002265012.1 CDS mfd NC_011313.1 762036 765491 D transcription-repair coupling factor 762036..765491 Aliivibrio salmonicida LFI1238 6962071 YP_002265013.1 CDS VSAL_II0697 NC_011313.1 765578 766468 D hypothetical protein 765578..766468 Aliivibrio salmonicida LFI1238 6962529 YP_002265014.1 CDS VSAL_II0699 NC_011313.1 766877 767224 D transposase 766877..767224 Aliivibrio salmonicida LFI1238 6962073 YP_002265015.1 CDS VSAL_II0701 NC_011313.1 768809 769432 D putative lipoprotein 768809..769432 Aliivibrio salmonicida LFI1238 6962075 YP_002265016.1 CDS fkpA NC_011313.1 769457 769930 D Similar to C-terminal part of Aeromonas hydrophila FKBP-type peptidyl-prolyl cis-trans isomerase fkpA precursor UniProt:O08437 (268 aa) fasta scores: E()=8.3e-25, 63.158% id in 133 aa; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 769457..769930 Aliivibrio salmonicida LFI1238 6962076 YP_002265017.1 CDS VSAL_II0703 NC_011313.1 770002 770667 R hypothetical protein complement(770002..770667) Aliivibrio salmonicida LFI1238 6962461 YP_002265018.1 CDS hutC NC_011313.1 770776 771480 D histidine utilization repressor 770776..771480 Aliivibrio salmonicida LFI1238 6962077 YP_002265019.1 CDS hutI NC_011313.1 771653 772876 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 771653..772876 Aliivibrio salmonicida LFI1238 6962489 YP_002265020.1 CDS VSAL_II0706 NC_011313.1 772885 773919 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 772885..773919 Aliivibrio salmonicida LFI1238 6962491 YP_002265021.1 CDS hutU NC_011313.1 773953 775647 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 773953..775647 Aliivibrio salmonicida LFI1238 6962078 YP_002265022.1 CDS hutH NC_011313.1 775737 777269 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 775737..777269 Aliivibrio salmonicida LFI1238 6962492 YP_002265023.1 CDS VSAL_II0710 NC_011313.1 778754 779005 D hypothetical protein 778754..779005 Aliivibrio salmonicida LFI1238 6962615 YP_002265024.1 CDS VSAL_II0711 NC_011313.1 779111 780142 R hypothetical protein complement(779111..780142) Aliivibrio salmonicida LFI1238 6962079 YP_002265025.1 CDS VSAL_II0712 NC_011313.1 780900 782540 D Expression may be regulated by Fur; methyl-accepting chemotaxis citrate transducer 780900..782540 Aliivibrio salmonicida LFI1238 6962080 YP_002265026.1 CDS VSAL_II0713 NC_011313.1 782610 783182 R hypothetical protein complement(782610..783182) Aliivibrio salmonicida LFI1238 6962081 YP_002265027.1 CDS cusA NC_011313.1 783284 786409 R cation efflux system protein complement(783284..786409) Aliivibrio salmonicida LFI1238 6962082 YP_002265028.1 CDS VSAL_II0715 NC_011313.1 786406 787875 R Similar to Escherichia coli Cation efflux system protein cusB precursor UniProt:P77239 (407 aa) fasta scores: E()=1.5e-33, 32.927% id in 410 aa; putative cation efflux system protein complement(786406..787875) Aliivibrio salmonicida LFI1238 6962446 YP_002265029.1 CDS VSAL_II0716 NC_011313.1 787886 789220 R hypothetical protein complement(787886..789220) Aliivibrio salmonicida LFI1238 6962083 YP_002265030.1 CDS VSAL_II0717 NC_011313.1 789325 789747 R hypothetical protein complement(789325..789747) Aliivibrio salmonicida LFI1238 6962084 YP_002265031.1 CDS VSAL_II0718 NC_011313.1 790009 791034 D membrane protein 790009..791034 Aliivibrio salmonicida LFI1238 6962085 YP_002265032.1 CDS VSAL_II0719 NC_011313.1 791084 791935 R hypothetical protein complement(791084..791935) Aliivibrio salmonicida LFI1238 6962086 YP_002265033.1 CDS VSAL_II0720 NC_011313.1 792147 793328 D putative heme-Cu membrane protein (NnrS) 792147..793328 Aliivibrio salmonicida LFI1238 6962087 YP_002265034.1 CDS nagE NC_011313.1 793484 794944 D PTS system permease for N-acetylglucosamine and glucose 793484..794944 Aliivibrio salmonicida LFI1238 6962088 YP_002265035.1 CDS VSAL_II0722 NC_011313.1 795062 795355 R hypothetical protein complement(795062..795355) Aliivibrio salmonicida LFI1238 6962541 YP_002265036.1 CDS VSAL_II0723 NC_011313.1 795578 796255 D response regulator 795578..796255 Aliivibrio salmonicida LFI1238 6962089 YP_002265037.1 CDS VSAL_II0725 NC_011313.1 797577 798194 R molecuar chaperone DnaJ complement(797577..798194) Aliivibrio salmonicida LFI1238 6962091 YP_002265038.1 CDS VSAL_II0726 NC_011313.1 798269 798601 R membrane protein complement(798269..798601) Aliivibrio salmonicida LFI1238 6962092 YP_002265039.1 CDS mukB NC_011313.1 798746 803218 R SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB complement(798746..803218) Aliivibrio salmonicida LFI1238 6962093 YP_002265040.1 CDS mukE NC_011313.1 803215 803931 R acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E complement(803215..803931) Aliivibrio salmonicida LFI1238 6962537 YP_002265041.1 CDS mukF NC_011313.1 803939 805276 R acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F complement(803939..805276) Aliivibrio salmonicida LFI1238 6962538 YP_002265042.1 CDS VSAL_II0730 NC_011313.1 805302 806081 R involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA complement(805302..806081) Aliivibrio salmonicida LFI1238 6962539 YP_002265043.1 CDS VSAL_II0731 NC_011313.1 806216 807079 D hypothetical protein 806216..807079 Aliivibrio salmonicida LFI1238 6962094 YP_002265044.1 CDS kdsB NC_011313.1 807159 807908 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(807159..807908) Aliivibrio salmonicida LFI1238 6962095 YP_002265045.1 CDS VSAL_II0733 NC_011313.1 807890 808051 R Possible alternative translational start; hypothetical protein complement(807890..808051) Aliivibrio salmonicida LFI1238 6962502 YP_002265046.1 CDS lpxK NC_011313.1 808068 809075 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(808068..809075) Aliivibrio salmonicida LFI1238 6962096 YP_002265047.1 CDS msbA NC_011313.1 809075 810823 R involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding protein/permease complement(809075..810823) Aliivibrio salmonicida LFI1238 6962508 YP_002265048.1 CDS VSAL_II0736 NC_011313.1 810858 813164 R putative competence-related protein complement(810858..813164) Aliivibrio salmonicida LFI1238 6962536 YP_002265049.1 CDS VSAL_II0737 NC_011313.1 813171 813695 D membrane protein 813171..813695 Aliivibrio salmonicida LFI1238 6962097 YP_002265050.1 CDS ppaC NC_011313.1 814198 815118 R catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase complement(814198..815118) Aliivibrio salmonicida LFI1238 6962098 YP_002265051.1 CDS VSAL_II0739 NC_011313.1 815375 815851 D Similar to Bacteriophage P2 Replication gene A protein (GpA) UniProt:Q06419 (761 aa) fasta scores: E()=1.7e-05, 32.948% id in 173 aa; putative phage replication protein 815375..815851 Aliivibrio salmonicida LFI1238 6962556 YP_002265052.1 CDS VSAL_II0740 NC_011313.1 815848 816135 D hypothetical protein 815848..816135 Aliivibrio salmonicida LFI1238 6962099 YP_002265053.1 CDS VSAL_II0741 NC_011313.1 816178 816411 D Similar to Bacteriophage L-413C Ogr UniProt:Q858U4 (99 aa) fasta scores: E()=6.8e-06, 41.429% id in 70 aa; putative phage zinc-binding transcriptional activator 816178..816411 Aliivibrio salmonicida LFI1238 6962100 YP_002265054.1 CDS VSAL_II0742 NC_011313.1 816531 817196 R putative HNH endonuclease complement(816531..817196) Aliivibrio salmonicida LFI1238 6962101 YP_002265055.1 CDS VSAL_II0743 NC_011313.1 817201 818445 R hypothetical protein complement(817201..818445) Aliivibrio salmonicida LFI1238 6962102 YP_002265056.1 CDS VSAL_II0744 NC_011313.1 818982 819254 D Weakly similar to Pseudomonas phage PsP3 Late gene activator Pag UniProt:Q37973 (72 aa) fasta scores: E()=0.27, 34.783% id in 69 aa; putative phage zinc-binding transcriptional activator 818982..819254 Aliivibrio salmonicida LFI1238 6962103 YP_002265057.1 CDS VSAL_II0745 NC_011313.1 819321 820337 D Weakly similar to Bacteriophage HP1 Major capsid protein UniProt:P51720 (336 aa) fasta scores: E()=2e-20,28.025% id in 314 aa; major capsid protein 819321..820337 Aliivibrio salmonicida LFI1238 6962104 YP_002265058.1 CDS VSAL_II0747 NC_011313.1 821414 821836 D transposase 821414..821836 Aliivibrio salmonicida LFI1238 6962106 YP_002265059.1 CDS VSAL_II0748 NC_011313.1 821854 822420 D transposase 821854..822420 Aliivibrio salmonicida LFI1238 6962107 YP_002265060.1 CDS VSAL_II0749 NC_011313.1 823511 823825 D transposase 823511..823825 Aliivibrio salmonicida LFI1238 6962108 YP_002265061.1 CDS VSAL_II0750 NC_011313.1 823822 824169 D transposase 823822..824169 Aliivibrio salmonicida LFI1238 6962109 YP_002265062.1 CDS VSAL_II0751 NC_011313.1 824241 825728 D transposase 824241..825728 Aliivibrio salmonicida LFI1238 6962110 YP_002265063.1 CDS VSAL_II0752 NC_011313.1 825849 826406 D hypothetical protein 825849..826406 Aliivibrio salmonicida LFI1238 6962111 YP_002265064.1 CDS VSAL_II0753 NC_011313.1 826564 827232 D outer membrane protein, OmpA family 826564..827232 Aliivibrio salmonicida LFI1238 6962112 YP_002265065.1 CDS VSAL_II0754 NC_011313.1 827377 827547 R hypothetical protein complement(827377..827547) Aliivibrio salmonicida LFI1238 6962113 YP_002265066.1 CDS VSAL_II0755 NC_011313.1 827604 828302 D membrane protein 827604..828302 Aliivibrio salmonicida LFI1238 6962114 YP_002265067.1 CDS VSAL_II0756 NC_011313.1 828380 830056 R methyl-accepting chemotaxis protein complement(828380..830056) Aliivibrio salmonicida LFI1238 6962115 YP_002265068.1 CDS VSAL_II0757 NC_011313.1 830288 830674 D hypothetical protein 830288..830674 Aliivibrio salmonicida LFI1238 6962116 YP_002265069.1 CDS VSAL_II0758 NC_011313.1 830728 832836 D Similar to Salmonella typhimurium Suppressor for copper-sensitivity B precursor ScsB UniProt:O33918 (627 aa) fasta scores: E()=6.7e-55, 38.657% id in 670 aa; putative suppressor for copper-sensitivity B 830728..832836 Aliivibrio salmonicida LFI1238 6962117 YP_002265070.1 CDS VSAL_II0759 NC_011313.1 832836 833372 D Similar to Salmonella typhimurium Suppressor for copper-sensitivity D ScsD UniProt:O33920 (168 aa) fasta scores: E()=3.3e-20, 36.145% id in 166 aa; putative suppressor for copper-sensitivity D 832836..833372 Aliivibrio salmonicida LFI1238 6962118 YP_002265071.1 CDS VSAL_II0760 NC_011313.1 833383 834033 D Similar to Salmonella typhimurium Suppressor for copper-sensitivity C precursor ScsC UniProt:O33919 (207 aa) fasta scores: E()=2.8e-10, 38.136% id in 118 aa; putative suppressor for copper-sensitivity C 833383..834033 Aliivibrio salmonicida LFI1238 6962119 YP_002265072.1 CDS VSAL_II0762 NC_011313.1 835911 836792 D transposase 835911..836792 Aliivibrio salmonicida LFI1238 6962121 YP_002265073.1 CDS VSAL_II0763 NC_011313.1 836847 837494 R putative DNA-binding protein complement(836847..837494) Aliivibrio salmonicida LFI1238 6962122 YP_002265074.1 CDS gcvH NC_011313.1 837752 838132 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 837752..838132 Aliivibrio salmonicida LFI1238 6962123 YP_002265075.1 CDS gcvP NC_011313.1 838156 841023 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 838156..841023 Aliivibrio salmonicida LFI1238 6962467 YP_002265076.1 CDS VSAL_II0766 NC_011313.1 841210 841524 D transposase 841210..841524 Aliivibrio salmonicida LFI1238 6962468 YP_002265077.1 CDS VSAL_II0767 NC_011313.1 841521 841868 D transposase 841521..841868 Aliivibrio salmonicida LFI1238 6962124 YP_002265079.1 CDS VSAL_II0771 NC_011313.1 847404 849389 R methyl-accepting chemotaxis protein complement(847404..849389) Aliivibrio salmonicida LFI1238 6962128 YP_002265080.1 CDS torA NC_011313.1 849629 852091 R trimethylamine-N-oxide reductase precursor complement(849629..852091) Aliivibrio salmonicida LFI1238 6962129 YP_002265081.1 CDS VSAL_II0773 NC_011313.1 852115 853293 R cytochrome c-type protein complement(852115..853293) Aliivibrio salmonicida LFI1238 6962610 YP_002265082.1 CDS VSAL_II0774 NC_011313.1 853357 853533 R putative periplasmic nitrate reductase protein NapE complement(853357..853533) Aliivibrio salmonicida LFI1238 6962130 YP_002265083.1 CDS VSAL_II0775 NC_011313.1 853865 854173 R hypothetical protein complement(853865..854173) Aliivibrio salmonicida LFI1238 6962131 YP_002265084.1 CDS VSAL_II0776 NC_011313.1 854291 854809 D Expression may be regulated by Fur; hypothetical protein 854291..854809 Aliivibrio salmonicida LFI1238 6962132 YP_002265085.1 CDS VSAL_II0777 NC_011313.1 854814 855002 D hypothetical protein 854814..855002 Aliivibrio salmonicida LFI1238 6962133 YP_002265086.1 CDS VSAL_II0778 NC_011313.1 855160 856041 D transposase 855160..856041 Aliivibrio salmonicida LFI1238 6962134 YP_002265087.1 CDS VSAL_II0779 NC_011313.1 856075 856761 R manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase complement(856075..856761) Aliivibrio salmonicida LFI1238 6962135 YP_002265088.1 CDS modC NC_011313.1 856793 857884 R Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein complement(856793..857884) Aliivibrio salmonicida LFI1238 6962136 YP_002265089.1 CDS modB NC_011313.1 857886 858575 R part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease complement(857886..858575) Aliivibrio salmonicida LFI1238 6962533 YP_002265090.1 CDS modA NC_011313.1 858575 859309 R molybdate-binding periplasmic protein ModA complement(858575..859309) Aliivibrio salmonicida LFI1238 6962532 YP_002265091.1 CDS cobQ NC_011313.1 859322 860809 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(859322..860809) Aliivibrio salmonicida LFI1238 6962531 YP_002265092.1 CDS VSAL_II0784 NC_011313.1 861045 861422 D hypothetical protein 861045..861422 Aliivibrio salmonicida LFI1238 6962444 YP_002265093.1 CDS VSAL_II0785 NC_011313.1 861505 862044 D hypothetical protein 861505..862044 Aliivibrio salmonicida LFI1238 6962137 YP_002265094.1 CDS VSAL_II0786 NC_011313.1 862397 863698 D CDS contains a rare Leucine start codon (TTA); transglycosylase 862397..863698 Aliivibrio salmonicida LFI1238 6962138 YP_002265095.1 CDS VSAL_II0787 NC_011313.1 863816 865234 D Similar to Escherichia coli Lytic transglycosylase Slt70 (PDB 1QSA), evalue=4e-09 identity=(49, 166); putative transglycosylase protein 863816..865234 Aliivibrio salmonicida LFI1238 6962139 YP_002265096.1 CDS VSAL_II0788 NC_011313.1 865346 866014 R putative lipoprotein complement(865346..866014) Aliivibrio salmonicida LFI1238 6962140 YP_002265097.1 CDS VSAL_II0789 NC_011313.1 866085 867272 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(866085..867272) Aliivibrio salmonicida LFI1238 6962141 YP_002265098.1 CDS nrdG NC_011313.1 867363 867833 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(867363..867833) Aliivibrio salmonicida LFI1238 6962142 YP_002265099.1 CDS nrdD NC_011313.1 867833 869953 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(867833..869953) Aliivibrio salmonicida LFI1238 6962545 YP_002265100.1 CDS VSAL_II0792 NC_011313.1 870116 871081 D membrane protein 870116..871081 Aliivibrio salmonicida LFI1238 6962544 YP_002265101.1 CDS VSAL_II0793 NC_011313.1 871164 871349 R hypothetical protein complement(871164..871349) Aliivibrio salmonicida LFI1238 6962143 YP_002265102.1 CDS tag NC_011313.1 871445 872005 R DNA-3-methyladenine glycosylase I complement(871445..872005) Aliivibrio salmonicida LFI1238 6962144 YP_002265103.1 CDS VSAL_II0795 NC_011313.1 872126 872566 D membrane protein 872126..872566 Aliivibrio salmonicida LFI1238 6962599 YP_002265104.1 CDS VSAL_II0796 NC_011313.1 872563 873129 D hypothetical protein 872563..873129 Aliivibrio salmonicida LFI1238 6962145 YP_002265105.1 CDS VSAL_II0797 NC_011313.1 873183 873629 D hypothetical protein 873183..873629 Aliivibrio salmonicida LFI1238 6962146 YP_002265106.1 CDS VSAL_II0798 NC_011313.1 873731 874627 D Possible alternative translational start site after codon 21; integral membrane protein 873731..874627 Aliivibrio salmonicida LFI1238 6962147 YP_002265107.1 CDS VSAL_II0799 NC_011313.1 874663 874842 R hypothetical protein complement(874663..874842) Aliivibrio salmonicida LFI1238 6962148 YP_002265108.1 CDS VSAL_II0800 NC_011313.1 874885 875265 R hypothetical protein complement(874885..875265) Aliivibrio salmonicida LFI1238 6962149 YP_002265109.1 CDS VSAL_II0802 NC_011313.1 878938 879504 R transposase complement(878938..879504) Aliivibrio salmonicida LFI1238 6962151 YP_002265110.1 CDS VSAL_II0803 NC_011313.1 879522 879944 R transposase complement(879522..879944) Aliivibrio salmonicida LFI1238 6962152 YP_002265111.1 CDS VSAL_II0805 NC_011313.1 880910 881518 R hypothetical protein complement(880910..881518) Aliivibrio salmonicida LFI1238 6962154 YP_002265112.1 CDS VSAL_II0806 NC_011313.1 881561 884884 R hypothetical protein complement(881561..884884) Aliivibrio salmonicida LFI1238 6962155 YP_002265113.1 CDS VSAL_II0807 NC_011313.1 885024 885446 D transposase 885024..885446 Aliivibrio salmonicida LFI1238 6962156 YP_002265114.1 CDS VSAL_II0808 NC_011313.1 885464 886030 D transposase 885464..886030 Aliivibrio salmonicida LFI1238 6962157 YP_002265115.1 CDS VSAL_II0809 NC_011313.1 886357 887238 R transposase complement(886357..887238) Aliivibrio salmonicida LFI1238 6962158 YP_002265116.1 CDS VSAL_II0810 NC_011313.1 887405 888517 R ABC transporter ATP-binding protein complement(887405..888517) Aliivibrio salmonicida LFI1238 6962159 YP_002265117.1 CDS VSAL_II0811 NC_011313.1 888686 889741 R Possible alternative translational start site after codon 13; extracellular solute-binding protein complement(888686..889741) Aliivibrio salmonicida LFI1238 6962160 YP_002265118.1 CDS VSAL_II0812 NC_011313.1 889912 891042 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 889912..891042 Aliivibrio salmonicida LFI1238 6962161 YP_002265119.1 CDS VSAL_II0813 NC_011313.1 891039 892418 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 891039..892418 Aliivibrio salmonicida LFI1238 6962162 YP_002265120.1 CDS VSAL_II0814 NC_011313.1 892456 893271 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 892456..893271 Aliivibrio salmonicida LFI1238 6962163 YP_002265121.1 CDS VSAL_II0815 NC_011313.1 893345 893587 R hypothetical protein complement(893345..893587) Aliivibrio salmonicida LFI1238 6962164 YP_002265122.1 CDS VSAL_II0816 NC_011313.1 893856 894215 R putative glutaredoxin complement(893856..894215) Aliivibrio salmonicida LFI1238 6962165 YP_002265123.1 CDS putP NC_011313.1 894423 895919 R proline permease complement(894423..895919) Aliivibrio salmonicida LFI1238 6962166 YP_002265124.1 CDS VSAL_II0818 NC_011313.1 896039 896746 R hypothetical protein complement(896039..896746) Aliivibrio salmonicida LFI1238 6962563 YP_002265125.1 CDS putA NC_011313.1 896761 899919 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(896761..899919) Aliivibrio salmonicida LFI1238 6962167 YP_002265126.1 CDS VSAL_II0820 NC_011313.1 900099 900878 R AraC family transcriptional regulator complement(900099..900878) Aliivibrio salmonicida LFI1238 6962562 YP_002265127.1 CDS VSAL_II0821 NC_011313.1 901393 903267 D hypothetical protein 901393..903267 Aliivibrio salmonicida LFI1238 6962168 YP_002265128.1 CDS VSAL_II0822 NC_011313.1 903548 904039 D hypothetical protein 903548..904039 Aliivibrio salmonicida LFI1238 6962169 YP_002265129.1 CDS VSAL_II0823 NC_011313.1 904326 904595 D PTS system lactose/cellobiose specific transporter subunit IIB 904326..904595 Aliivibrio salmonicida LFI1238 6962170 YP_002265130.1 CDS ulaA NC_011313.1 904607 905863 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 904607..905863 Aliivibrio salmonicida LFI1238 6962171 YP_002265131.1 CDS VSAL_II0825 NC_011313.1 905860 906309 D Similar to Escherichia coli Mannitol-specific cryptic phosphotransferase enzyme IIA component UniProt:P69824 (147 aa) fasta scores: E()=9.9e-12, 36.913% id in 149 aa; putative phosphotransferase enzyme II, A component 905860..906309 Aliivibrio salmonicida LFI1238 6962172 YP_002265132.1 CDS VSAL_II0826 NC_011313.1 906482 907273 D membrane protein 906482..907273 Aliivibrio salmonicida LFI1238 6962173 YP_002265133.1 CDS VSAL_II0827 NC_011313.1 907304 908284 R membrane protein complement(907304..908284) Aliivibrio salmonicida LFI1238 6962174 YP_002265134.1 CDS VSAL_II0829 NC_011313.1 909118 910311 R transposase complement(909118..910311) Aliivibrio salmonicida LFI1238 6962176 YP_002265135.1 CDS VSAL_II0832 NC_011313.1 912344 912691 D transposase 912344..912691 Aliivibrio salmonicida LFI1238 6962179 YP_002265136.1 CDS VSAL_II0833 NC_011313.1 912763 914250 D transposase 912763..914250 Aliivibrio salmonicida LFI1238 6962180 YP_002265137.1 CDS VSAL_II0834 NC_011313.1 920490 920867 R hypothetical protein complement(920490..920867) Aliivibrio salmonicida LFI1238 6962427 YP_002265138.1 CDS VSAL_II0835 NC_011313.1 920870 921763 R CDS contains a rare Leucine start codon (TTA); LysR family transcriptional regulator complement(920870..921763) Aliivibrio salmonicida LFI1238 6962182 YP_002265139.1 CDS kbl NC_011313.1 921903 923099 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 921903..923099 Aliivibrio salmonicida LFI1238 6962183 YP_002265140.1 CDS tdh NC_011313.1 923099 924130 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 923099..924130 Aliivibrio salmonicida LFI1238 6962501 YP_002265141.1 CDS VSAL_II0838 NC_011313.1 924320 924682 D hypothetical protein 924320..924682 Aliivibrio salmonicida LFI1238 6962601 YP_002265142.1 CDS VSAL_II0839 NC_011313.1 924710 925948 R hypothetical protein complement(924710..925948) Aliivibrio salmonicida LFI1238 6962184 YP_002265143.1 CDS VSAL_II0840 NC_011313.1 926138 928471 R Expression may be regulated by Fur; Similar to Vibrio fischeri (strain ATCC 700601/ES114) atp-dependent protease la (ec 3.4.21.53). UniProt:Q5E0G2 (EMBL:CP000021) (776 aa) fasta scores: E()=0, 85.8% id in 776 aa; putative Lon protease complement(926138..928471) Aliivibrio salmonicida LFI1238 6962185 YP_002265144.1 CDS VSAL_II0842 NC_011313.1 930236 931213 R putative NADP or NAD utilizing oxidoreductase complement(930236..931213) Aliivibrio salmonicida LFI1238 6962187 YP_002265145.1 CDS VSAL_II0843 NC_011313.1 931240 931584 R hypothetical protein complement(931240..931584) Aliivibrio salmonicida LFI1238 6962188 YP_002265146.1 CDS VSAL_II0844 NC_011313.1 931674 931952 R hypothetical protein complement(931674..931952) Aliivibrio salmonicida LFI1238 6962189 YP_002265147.1 CDS VSAL_II0845 NC_011313.1 931959 933137 R MFS transporter complement(931959..933137) Aliivibrio salmonicida LFI1238 6962190 YP_002265148.1 CDS VSAL_II0846 NC_011313.1 933434 933943 D putative acetyltransferase 933434..933943 Aliivibrio salmonicida LFI1238 6962191 YP_002265149.1 CDS VSAL_II0847 NC_011313.1 934011 934280 R hypothetical protein complement(934011..934280) Aliivibrio salmonicida LFI1238 6962192 YP_002265150.1 CDS VSAL_II0848 NC_011313.1 934427 935431 R hypothetical protein complement(934427..935431) Aliivibrio salmonicida LFI1238 6962193 YP_002265151.1 CDS VSAL_II0849 NC_011313.1 935585 935998 R hypothetical protein complement(935585..935998) Aliivibrio salmonicida LFI1238 6962194 YP_002265152.1 CDS VSAL_II0850 NC_011313.1 935995 936333 R hypothetical protein complement(935995..936333) Aliivibrio salmonicida LFI1238 6962195 YP_002265153.1 CDS VSAL_II0851 NC_011313.1 936714 937358 D putative transcriptional regulator 936714..937358 Aliivibrio salmonicida LFI1238 6962196 YP_002265154.1 CDS VSAL_II0852 NC_011313.1 937351 937824 D membrane protein 937351..937824 Aliivibrio salmonicida LFI1238 6962197 YP_002265155.1 CDS VSAL_II0853 NC_011313.1 937892 938911 R membrane protein complement(937892..938911) Aliivibrio salmonicida LFI1238 6962198 YP_002265156.1 CDS VSAL_II0854 NC_011313.1 938924 939991 R secretion protein, HlyD family complement(938924..939991) Aliivibrio salmonicida LFI1238 6962199 YP_002265157.1 CDS VSAL_II0855 NC_011313.1 940093 940971 D LysR family transcriptional regulator 940093..940971 Aliivibrio salmonicida LFI1238 6962200 YP_002265158.1 CDS VSAL_II0856 NC_011313.1 941131 941367 D hypothetical protein 941131..941367 Aliivibrio salmonicida LFI1238 6962201 YP_002265159.1 CDS bioD NC_011313.1 941439 942122 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(941439..942122) Aliivibrio salmonicida LFI1238 6962202 YP_002265160.1 CDS bioC NC_011313.1 942115 942942 R biotin synthesis protein BioC complement(942115..942942) Aliivibrio salmonicida LFI1238 6962438 YP_002265161.1 CDS bioF NC_011313.1 942950 944101 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(942950..944101) Aliivibrio salmonicida LFI1238 6962437 YP_002265162.1 CDS bioB NC_011313.1 944085 945137 R biotin synthase complement(944085..945137) Aliivibrio salmonicida LFI1238 6962439 YP_002265163.1 CDS bioA NC_011313.1 945244 946524 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 945244..946524 Aliivibrio salmonicida LFI1238 6962436 YP_002265164.1 CDS VSAL_II0862 NC_011313.1 946596 946802 R membrane protein complement(946596..946802) Aliivibrio salmonicida LFI1238 6962435 YP_002265165.1 CDS rimJ NC_011313.1 946934 947500 R ribosomal-protein-alanine acetyltransferase complement(946934..947500) Aliivibrio salmonicida LFI1238 6962203 YP_002265166.1 CDS VSAL_II0864 NC_011313.1 947503 949050 R Similar to Enterobacter agglomerans Transcriptional regulatory protein TyrR UniProt:Q9ZIB7 (521 aa) fasta scores: E()=3.7e-92, 49.516% id in 517 aa; sigma-54 interaction protein complement(947503..949050) Aliivibrio salmonicida LFI1238 6962573 YP_002265167.1 CDS VSAL_II0865 NC_011313.1 949199 950143 D hypothetical protein 949199..950143 Aliivibrio salmonicida LFI1238 6962204 YP_002265168.1 CDS phrA NC_011313.1 950133 951572 D Similar to Vibrio cholerae Deoxyribodipyrimidine photo-lyase PhrA UniProt:Q9KNA8 (469 aa) fasta scores: E()=1.5e-94, 49.364% id in 472 aa; deoxyribodipyrimidine photo-lyase 950133..951572 Aliivibrio salmonicida LFI1238 6962205 YP_002265169.1 CDS VSAL_II0867 NC_011313.1 951624 953492 D hypothetical protein 951624..953492 Aliivibrio salmonicida LFI1238 6962551 YP_002265170.1 CDS VSAL_II0868 NC_011313.1 953830 954768 D Expression may be regulated by Fur; putative lipoprotein 953830..954768 Aliivibrio salmonicida LFI1238 6962206 YP_002265171.1 CDS VSAL_II0869 NC_011313.1 954818 955321 R hypothetical protein complement(954818..955321) Aliivibrio salmonicida LFI1238 6962207 YP_002265172.1 CDS VSAL_II0870 NC_011313.1 955318 955800 R hypothetical protein complement(955318..955800) Aliivibrio salmonicida LFI1238 6962208 YP_002265173.1 CDS VSAL_II0871 NC_011313.1 955808 956341 R membrane protein complement(955808..956341) Aliivibrio salmonicida LFI1238 6962209 YP_002265174.1 CDS VSAL_II0873 NC_011313.1 957677 958408 R hypothetical protein complement(957677..958408) Aliivibrio salmonicida LFI1238 6962211 YP_002265175.1 CDS VSAL_II0875 NC_011313.1 959426 960619 D transposase 959426..960619 Aliivibrio salmonicida LFI1238 6962213 YP_002265176.1 CDS VSAL_II0876 NC_011313.1 960911 962398 D transposase 960911..962398 Aliivibrio salmonicida LFI1238 6962214 YP_002265177.1 CDS VSAL_II0878 NC_011313.1 963451 963768 D putative cytochrome c-554 963451..963768 Aliivibrio salmonicida LFI1238 6962216 YP_002265178.1 CDS VSAL_II0879 NC_011313.1 963735 964898 R NifS-related protein aminotransferase complement(963735..964898) Aliivibrio salmonicida LFI1238 6962217 YP_002265179.1 CDS bsmA NC_011313.1 964951 965607 R Similar to Serratia liquefaciens BsmA UniProt:Q71BC1 (214 aa) fasta scores: E()=3.4e-46, 59.048% id in 210 aa; cell aggregate formation protein, biofilm development BsmA complement(964951..965607) Aliivibrio salmonicida LFI1238 6962218 YP_002265180.1 CDS VSAL_II0881 NC_011313.1 965846 967030 R Similar to Escherichia coli Multidrug resistance protein D EmrD UniProt:P31442 (394 aa) fasta scores: E()=3.4e-24, 30.709% id in 381 aa; drug resistance translocator protein complement(965846..967030) Aliivibrio salmonicida LFI1238 6962440 YP_002265181.1 CDS VSAL_II0882 NC_011313.1 967109 967981 D Similar to Escherichia coli HTH-type transcriptional activator AaeR UniProt:P67662 (309 aa) fasta scores: E()=1.9e-22, 34.899% id in 298 aa; LysR family transcriptional regulator 967109..967981 Aliivibrio salmonicida LFI1238 6962219 YP_002265182.1 CDS VSAL_II0883 NC_011313.1 968097 968717 D amino acid transport protein, LysE type 968097..968717 Aliivibrio salmonicida LFI1238 6962220 YP_002265183.1 CDS VSAL_II0884 NC_011313.1 968890 969447 D glutaredoxin 968890..969447 Aliivibrio salmonicida LFI1238 6962221 YP_002265184.1 CDS VSAL_II0885 NC_011313.1 969713 971851 D membrane associated GGDEF protein 969713..971851 Aliivibrio salmonicida LFI1238 6962222 YP_002265185.1 CDS VSAL_II0886 NC_011313.1 971854 972033 R hypothetical protein complement(971854..972033) Aliivibrio salmonicida LFI1238 6962223 YP_002265186.1 CDS VSAL_II0887 NC_011313.1 972176 972919 D putative hydrolase 972176..972919 Aliivibrio salmonicida LFI1238 6962224 YP_002265187.1 CDS VSAL_II0888 NC_011313.1 973015 973890 R membrane protein complement(973015..973890) Aliivibrio salmonicida LFI1238 6962225 YP_002265188.1 CDS VSAL_II0889 NC_011313.1 973944 974546 R hypothetical protein complement(973944..974546) Aliivibrio salmonicida LFI1238 6962226 YP_002265189.1 CDS VSAL_II0890 NC_011313.1 974815 975030 D hypothetical protein 974815..975030 Aliivibrio salmonicida LFI1238 6962227 YP_002265190.1 CDS VSAL_II0891 NC_011313.1 975030 975254 D hypothetical protein 975030..975254 Aliivibrio salmonicida LFI1238 6962228 YP_002265191.1 CDS VSAL_II0892 NC_011313.1 975254 975652 D hypothetical protein 975254..975652 Aliivibrio salmonicida LFI1238 6962229 YP_002265192.1 CDS VSAL_II0893 NC_011313.1 975667 976521 R putative HTH-type regulatory protein, AraC family complement(975667..976521) Aliivibrio salmonicida LFI1238 6962230 YP_002265193.1 CDS VSAL_II0894 NC_011313.1 976824 978725 D Similar to Xanthomonas campestris pv. campestris PTS system fructose-specific EIIBC component FruA UniProt:P23355 (580 aa) fasta scores: E()=6.5e-53, 41.807% id in 476 aa; PTS system transporter subunit IIBC 976824..978725 Aliivibrio salmonicida LFI1238 6962231 YP_002265194.1 CDS manA NC_011313.1 978784 980001 D mannose-6-phosphate isomerase 978784..980001 Aliivibrio salmonicida LFI1238 6962232 YP_002265195.1 CDS VSAL_II0896 NC_011313.1 980066 980857 R hypothetical protein complement(980066..980857) Aliivibrio salmonicida LFI1238 6962528 YP_002265196.1 CDS VSAL_II0897 NC_011313.1 980854 981198 R Similar to Escherichia coli Fructose-like phosphotransferase enzyme IIB component 2 FrwB UniProt:P69816 (106 aa) fasta scores: E()=8.7e-11, 46.316% id in 95 aa; PTS system transporter subunit IIB complement(980854..981198) Aliivibrio salmonicida LFI1238 6962233 YP_002265197.1 CDS VSAL_II0900 NC_011313.1 983459 984652 D transposase 983459..984652 Aliivibrio salmonicida LFI1238 6962236 YP_002265198.1 CDS tonB3 NC_011313.1 985955 986578 R TonB3 protein complement(985955..986578) Aliivibrio salmonicida LFI1238 6962237 YP_002265199.1 CDS exbD3 NC_011313.1 986578 986982 R TonB system transport protein ExbD3 complement(986578..986982) Aliivibrio salmonicida LFI1238 6962609 YP_002265200.1 CDS exbB3 NC_011313.1 986979 987512 R TonB system transport protein ExbB3 complement(986979..987512) Aliivibrio salmonicida LFI1238 6962460 YP_002265201.1 CDS tolR3 NC_011313.1 987512 988873 R Biopolymer transport protein TolR complement(987512..988873) Aliivibrio salmonicida LFI1238 6962458 YP_002265202.1 CDS VSAL_II0905 NC_011313.1 988875 989642 R hypothetical protein complement(988875..989642) Aliivibrio salmonicida LFI1238 6962607 YP_002265203.1 CDS hatB NC_011313.1 989719 991734 R part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit complement(989719..991734) Aliivibrio salmonicida LFI1238 6962238 YP_002265204.1 CDS hatC NC_011313.1 992664 993431 R iron(III) ABC transporter ATP-binding protein complement(992664..993431) Aliivibrio salmonicida LFI1238 6962239 YP_002265205.1 CDS desA NC_011313.1 993561 995711 R Expression may be regulated by Fur; ferrioxamine B receptor complement(993561..995711) Aliivibrio salmonicida LFI1238 6962486 YP_002265206.1 CDS VSAL_II0910 NC_011313.1 995856 996752 R AraC family transcriptional regulator complement(995856..996752) Aliivibrio salmonicida LFI1238 6962455 YP_002265207.1 CDS VSAL_II0911 NC_011313.1 996958 998529 R ABC transporter ATP-binding protein complement(996958..998529) Aliivibrio salmonicida LFI1238 6962240 YP_002265208.1 CDS VSAL_II0912 NC_011313.1 998797 999330 R hypothetical protein complement(998797..999330) Aliivibrio salmonicida LFI1238 6962241 YP_002265209.1 CDS nemA NC_011313.1 999320 1000417 R N-ethylmaleimide reductase complement(999320..1000417) Aliivibrio salmonicida LFI1238 6962242 YP_002265210.1 CDS VSAL_II0914 NC_011313.1 1000496 1001683 R MFS transporter complement(1000496..1001683) Aliivibrio salmonicida LFI1238 6962543 YP_002265211.1 CDS VSAL_II0915 NC_011313.1 1001920 1002855 D LysR family transcriptional regulator 1001920..1002855 Aliivibrio salmonicida LFI1238 6962243 YP_002265212.1 CDS VSAL_II0916 NC_011313.1 1003077 1003808 R membrane protein complement(1003077..1003808) Aliivibrio salmonicida LFI1238 6962244 YP_002265213.1 CDS VSAL_II0917 NC_011313.1 1003831 1004397 R transposase complement(1003831..1004397) Aliivibrio salmonicida LFI1238 6962245 YP_002265214.1 CDS VSAL_II0918 NC_011313.1 1004415 1004837 R transposase complement(1004415..1004837) Aliivibrio salmonicida LFI1238 6962246 YP_002265215.1 CDS malG NC_011313.1 1005562 1006452 D with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 1005562..1006452 Aliivibrio salmonicida LFI1238 6962521 YP_002265216.1 CDS VSAL_II0921 NC_011313.1 1006668 1007636 R putative GGDEF protein complement(1006668..1007636) Aliivibrio salmonicida LFI1238 6962523 YP_002265217.1 CDS VSAL_II0922 NC_011313.1 1007633 1008616 R Expression may be regulated by Fur; response regulator protein complement(1007633..1008616) Aliivibrio salmonicida LFI1238 6962248 YP_002265218.1 CDS ackA NC_011313.1 1008856 1010121 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1008856..1010121 Aliivibrio salmonicida LFI1238 6962249 YP_002265219.1 CDS VSAL_II0925 NC_011313.1 1013852 1014274 D transposase 1013852..1014274 Aliivibrio salmonicida LFI1238 6962250 YP_002265220.1 CDS VSAL_II0926 NC_011313.1 1014292 1014858 D transposase 1014292..1014858 Aliivibrio salmonicida LFI1238 6962251 YP_002265221.1 CDS VSAL_II0928 NC_011313.1 1015834 1017321 R transposase complement(1015834..1017321) Aliivibrio salmonicida LFI1238 6962522 YP_002265222.1 CDS VSAL_II0929 NC_011313.1 1017393 1017740 R transposase complement(1017393..1017740) Aliivibrio salmonicida LFI1238 6962253 YP_002265223.1 CDS VSAL_II0930 NC_011313.1 1017737 1018051 R transposase complement(1017737..1018051) Aliivibrio salmonicida LFI1238 6962254 YP_002265224.1 CDS bcsA NC_011313.1 1018599 1021217 R polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit complement(1018599..1021217) Aliivibrio salmonicida LFI1238 6962256 YP_002265225.1 CDS VSAL_II0933 NC_011313.1 1021222 1021992 R hypothetical protein complement(1021222..1021992) Aliivibrio salmonicida LFI1238 6962434 YP_002265226.1 CDS VSAL_II0934 NC_011313.1 1021992 1022228 R hypothetical protein complement(1021992..1022228) Aliivibrio salmonicida LFI1238 6962257 YP_002265227.1 CDS VSAL_II0935 NC_011313.1 1022509 1024056 D hypothetical protein 1022509..1024056 Aliivibrio salmonicida LFI1238 6962258 YP_002265228.1 CDS VSAL_II0936 NC_011313.1 1024061 1024237 D membrane protein 1024061..1024237 Aliivibrio salmonicida LFI1238 6962259 YP_002265229.1 CDS VSAL_II0937 NC_011313.1 1024234 1025859 D membrane protein 1024234..1025859 Aliivibrio salmonicida LFI1238 6962260 YP_002265230.1 CDS VSAL_II0938 NC_011313.1 1025940 1026410 R hypothetical protein complement(1025940..1026410) Aliivibrio salmonicida LFI1238 6962261 YP_002265231.1 CDS VSAL_II0939 NC_011313.1 1026685 1026975 D hypothetical protein 1026685..1026975 Aliivibrio salmonicida LFI1238 6962262 YP_002265232.1 CDS VSAL_II0940 NC_011313.1 1027211 1028221 D AraC family transcriptional regulator 1027211..1028221 Aliivibrio salmonicida LFI1238 6962263 YP_002265233.1 CDS VSAL_II0941 NC_011313.1 1028352 1028705 D hypothetical protein 1028352..1028705 Aliivibrio salmonicida LFI1238 6962264 YP_002265234.1 CDS VSAL_II0942 NC_011313.1 1028698 1029921 D putative secretion protein, HlyD family 1028698..1029921 Aliivibrio salmonicida LFI1238 6962265 YP_002265235.1 CDS VSAL_II0944 NC_011313.1 1033094 1033891 R hypothetical protein complement(1033094..1033891) Aliivibrio salmonicida LFI1238 6962515 YP_002265236.1 CDS VSAL_II0946 NC_011313.1 1035539 1036426 D integral membrane protein 1035539..1036426 Aliivibrio salmonicida LFI1238 6962268 YP_002265237.1 CDS VSAL_II0947 NC_011313.1 1036419 1036727 R No significant database matches. Expression may be stress-induced; hypothetical protein complement(1036419..1036727) Aliivibrio salmonicida LFI1238 6962269 YP_002265238.1 CDS VSAL_II0948 NC_011313.1 1036919 1037629 D ABC transporter ATP-binding protein 1036919..1037629 Aliivibrio salmonicida LFI1238 6962270 YP_002265239.1 CDS VSAL_II0949 NC_011313.1 1037629 1038501 D membrane protein 1037629..1038501 Aliivibrio salmonicida LFI1238 6962271 YP_002265240.1 CDS VSAL_II0950 NC_011313.1 1038577 1040007 R putative membrane associated signaling protein complement(1038577..1040007) Aliivibrio salmonicida LFI1238 6962272 YP_002265241.1 CDS VSAL_II0951 NC_011313.1 1040008 1041324 R membrane associated GGDEF protein complement(1040008..1041324) Aliivibrio salmonicida LFI1238 6962273 YP_002265242.1 CDS VSAL_II0952 NC_011313.1 1041346 1042596 R membrane associated GGDEF protein complement(1041346..1042596) Aliivibrio salmonicida LFI1238 6962274 YP_002265243.1 CDS VSAL_II0953 NC_011313.1 1042850 1044130 R membrane protein complement(1042850..1044130) Aliivibrio salmonicida LFI1238 6962275 YP_002265244.1 CDS maa NC_011313.1 1044323 1044874 R maltose O-acetyltransferase complement(1044323..1044874) Aliivibrio salmonicida LFI1238 6962276 YP_002265245.1 CDS VSAL_II0956 NC_011313.1 1046582 1047025 D putative cytidine and deoxycytidylate deaminase 1046582..1047025 Aliivibrio salmonicida LFI1238 6962277 YP_002265246.1 CDS luxI NC_011313.1 1047262 1047843 R autoinducer synthesis protein LuxI complement(1047262..1047843) Aliivibrio salmonicida LFI1238 6962278 YP_002265247.1 CDS luxR NC_011313.1 1048076 1048819 D transcriptional activator protein LuxR 1048076..1048819 Aliivibrio salmonicida LFI1238 6962514 YP_002265248.1 CDS fre NC_011313.1 1048883 1049590 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(1048883..1049590) Aliivibrio salmonicida LFI1238 6962517 YP_002265249.1 CDS VSAL_II0960 NC_011313.1 1049612 1050733 R long-chain-fatty-acid ligase LuxE complement(1049612..1050733) Aliivibrio salmonicida LFI1238 6962513 YP_002265250.1 CDS luxB NC_011313.1 1050812 1051792 R alkanal monooxygenase subunit beta complement(1050812..1051792) Aliivibrio salmonicida LFI1238 6962279 YP_002265251.1 CDS luxA NC_011313.1 1051831 1052895 R alkanal monooxygenase subunit alpha complement(1051831..1052895) Aliivibrio salmonicida LFI1238 6962510 YP_002265252.1 CDS luxD NC_011313.1 1052942 1053829 R part of the fatty acid reductase system required for aldehyde biosynthesis; produces fatty acids for the luminescent reaction; acyl transferase complement(1052942..1053829) Aliivibrio salmonicida LFI1238 6962509 YP_002265253.1 CDS luxC NC_011313.1 1053865 1055295 R acyl-CoA reductase LuxC complement(1053865..1055295) Aliivibrio salmonicida LFI1238 6962512 YP_002265254.1 CDS luxR NC_011313.1 1055927 1056673 D transcriptional activator protein LuxR 1055927..1056673 Aliivibrio salmonicida LFI1238 6962511 YP_002265255.1 CDS VSAL_II0966 NC_011313.1 1056777 1057577 R mechanosensitive ion channel complement(1056777..1057577) Aliivibrio salmonicida LFI1238 6962518 YP_002265256.1 CDS VSAL_II0967 NC_011313.1 1057788 1057970 R membrane protein complement(1057788..1057970) Aliivibrio salmonicida LFI1238 6962280 YP_002265257.1 CDS VSAL_II0968 NC_011313.1 1058433 1058957 D hypothetical protein 1058433..1058957 Aliivibrio salmonicida LFI1238 6962281 YP_002265258.1 CDS VSAL_II0969 NC_011313.1 1059098 1060063 D hypothetical protein 1059098..1060063 Aliivibrio salmonicida LFI1238 6962282 YP_002265259.1 CDS VSAL_II0970 NC_011313.1 1060538 1061728 D transposase 1060538..1061728 Aliivibrio salmonicida LFI1238 6962283 YP_002265260.1 CDS VSAL_II0973 NC_011313.1 1065188 1066675 R transposase complement(1065188..1066675) Aliivibrio salmonicida LFI1238 6962286 YP_002265261.1 CDS VSAL_II0974 NC_011313.1 1066747 1067094 R transposase complement(1066747..1067094) Aliivibrio salmonicida LFI1238 6962287 YP_002265262.1 CDS VSAL_II0975 NC_011313.1 1067091 1067405 R transposase complement(1067091..1067405) Aliivibrio salmonicida LFI1238 6962288 YP_002265263.1 CDS VSAL_II0977 NC_011313.1 1068013 1068870 R hypothetical protein complement(1068013..1068870) Aliivibrio salmonicida LFI1238 6962290 YP_002265264.1 CDS pepE NC_011313.1 1069349 1070086 D alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 1069349..1070086 Aliivibrio salmonicida LFI1238 6962291 YP_002265265.1 CDS VSAL_II0979 NC_011313.1 1070186 1071073 R LysR family transcriptional regulator complement(1070186..1071073) Aliivibrio salmonicida LFI1238 6962548 YP_002265266.1 CDS VSAL_II0980 NC_011313.1 1071202 1071921 D putative exported oxidoreductase 1071202..1071921 Aliivibrio salmonicida LFI1238 6962292 YP_002265267.1 CDS VSAL_II0981 NC_011313.1 1071973 1073079 R putative flavin containing amine oxidoreductase complement(1071973..1073079) Aliivibrio salmonicida LFI1238 6962293 YP_002265268.1 CDS VSAL_II0982 NC_011313.1 1073092 1073763 R hypothetical protein complement(1073092..1073763) Aliivibrio salmonicida LFI1238 6962294 YP_002265269.1 CDS VSAL_II0983 NC_011313.1 1073892 1074794 D LysR family transcriptional regulator 1073892..1074794 Aliivibrio salmonicida LFI1238 6962295 YP_002265270.1 CDS VSAL_II0984 NC_011313.1 1075047 1076009 D Expression may be regulated by Fur; hypothetical protein 1075047..1076009 Aliivibrio salmonicida LFI1238 6962296 YP_002265271.1 CDS VSAL_II0985 NC_011313.1 1076165 1077121 R membrane transport protein auxin efflux carrier complement(1076165..1077121) Aliivibrio salmonicida LFI1238 6962297 YP_002265272.1 CDS VSAL_II0986 NC_011313.1 1078170 1080347 D hypothetical protein 1078170..1080347 Aliivibrio salmonicida LFI1238 6962298 YP_002265273.1 CDS VSAL_II0987 NC_011313.1 1080433 1081953 D hypothetical protein 1080433..1081953 Aliivibrio salmonicida LFI1238 6962299 YP_002265274.1 CDS VSAL_II0988 NC_011313.1 1082009 1082686 D hypothetical protein 1082009..1082686 Aliivibrio salmonicida LFI1238 6962300 YP_002265275.1 CDS VSAL_II0990 NC_011313.1 1083820 1085013 D transposase 1083820..1085013 Aliivibrio salmonicida LFI1238 6962302 YP_002265276.1 CDS VSAL_II0991 NC_011313.1 1085305 1086792 D transposase 1085305..1086792 Aliivibrio salmonicida LFI1238 6962303 YP_002265277.1 CDS VSAL_II0993 NC_011313.1 1087960 1088307 R transposase complement(1087960..1088307) Aliivibrio salmonicida LFI1238 6962305 YP_002265278.1 CDS VSAL_II0994 NC_011313.1 1088304 1088618 R transposase complement(1088304..1088618) Aliivibrio salmonicida LFI1238 6962306 YP_002265279.1 CDS VSAL_II0995 NC_011313.1 1088783 1090186 R PTS system, fructose-like permease IIC component complement(1088783..1090186) Aliivibrio salmonicida LFI1238 6962307 YP_002265280.1 CDS VSAL_II0996 NC_011313.1 1090210 1090641 R Similar to Bacillus subtilis Phosphotransferase system (PTS) fructose-specific enzyme IIAB component FruA UniProt:P71012 (635 aa) fasta scores: E()=6.7e-11, 37.500% id in 144 aa; PTS system, permease-specific phosphorylation site EIIA component complement(1090210..1090641) Aliivibrio salmonicida LFI1238 6962308 YP_002265281.1 CDS VSAL_II0997 NC_011313.1 1091151 1092890 R Possible alternative translational start site after codon 12; membrane associated GGDEF protein complement(1091151..1092890) Aliivibrio salmonicida LFI1238 6962309 YP_002265282.1 CDS VSAL_II0998 NC_011313.1 1093126 1094028 R hypothetical protein complement(1093126..1094028) Aliivibrio salmonicida LFI1238 6962310 YP_002265283.1 CDS VSAL_II0999 NC_011313.1 1094104 1095420 R branched-chain amino acid transport system II carrier protein complement(1094104..1095420) Aliivibrio salmonicida LFI1238 6962311 YP_002265284.1 CDS VSAL_II1001 NC_011313.1 1098380 1098850 D putative lipoprotein 1098380..1098850 Aliivibrio salmonicida LFI1238 6962313 YP_002265285.1 CDS VSAL_II1002 NC_011313.1 1098951 1100453 R Similar to Bacillus ps3 Sodium/proton-dependent alanine carrier protein Acp UniProt:P30145 (445 aa) fasta scores: E()=1.6e-52, 50.759% id in 461 aa; sodium/proton-dependent alanine carrier protein complement(1098951..1100453) Aliivibrio salmonicida LFI1238 6962314 YP_002265286.1 CDS VSAL_II1003 NC_011313.1 1100751 1101083 R hypothetical protein complement(1100751..1101083) Aliivibrio salmonicida LFI1238 6962315 YP_002265287.1 CDS VSAL_II1006 NC_011313.1 1102436 1102783 D transposase 1102436..1102783 Aliivibrio salmonicida LFI1238 6962318 YP_002265288.1 CDS VSAL_II1007 NC_011313.1 1102855 1104342 D transposase 1102855..1104342 Aliivibrio salmonicida LFI1238 6962319 YP_002265289.1 CDS VSAL_II1009 NC_011313.1 1106799 1107146 D Expression may be stress-induced; hypothetical protein 1106799..1107146 Aliivibrio salmonicida LFI1238 6962321 YP_002265290.1 CDS VSAL_II1010 NC_011313.1 1107154 1107726 D hypothetical protein 1107154..1107726 Aliivibrio salmonicida LFI1238 6962322 YP_002265291.1 CDS VSAL_II1011 NC_011313.1 1107989 1109461 D Similar to Salmonella choleraesuis Putative POT family, peptide transport protein YdgR UniProt:Q57PI5 (501 aa) fasta scores: E()=1.2e-18, 20.896% id in 469 aa; peptide transporter 1107989..1109461 Aliivibrio salmonicida LFI1238 6962323 YP_002265292.1 CDS VSAL_II1012 NC_011313.1 1109534 1111270 R response regulator, histidine kinase complement(1109534..1111270) Aliivibrio salmonicida LFI1238 6962324 YP_002265293.1 CDS VSAL_II1013 NC_011313.1 1111287 1111820 R putative heme binding protein complement(1111287..1111820) Aliivibrio salmonicida LFI1238 6962325 YP_002265294.1 CDS VSAL_II1014 NC_011313.1 1112027 1112563 D hypothetical protein 1112027..1112563 Aliivibrio salmonicida LFI1238 6962326 YP_002265295.1 CDS VSAL_II1016 NC_011313.1 1113734 1114048 D transposase 1113734..1114048 Aliivibrio salmonicida LFI1238 6962328 YP_002265296.1 CDS VSAL_II1017 NC_011313.1 1114045 1114392 D transposase 1114045..1114392 Aliivibrio salmonicida LFI1238 6962329 YP_002265297.1 CDS VSAL_II1018 NC_011313.1 1114464 1115951 D transposase 1114464..1115951 Aliivibrio salmonicida LFI1238 6962330 YP_002265298.1 CDS VSAL_II1019 NC_011313.1 1116160 1116774 R hypothetical protein complement(1116160..1116774) Aliivibrio salmonicida LFI1238 6962331 YP_002265299.1 CDS VSAL_II1020 NC_011313.1 1116879 1117946 R membrane protein complement(1116879..1117946) Aliivibrio salmonicida LFI1238 6962332 YP_002265300.1 CDS VSAL_II1021 NC_011313.1 1118089 1118922 R Similar to Escherichia coli Inner membrane protein YddG UniProt:P46136 (274 aa) fasta scores: E()=2.9e-47,48.897% id in 272 aa; hypothetical protein complement(1118089..1118922) Aliivibrio salmonicida LFI1238 6962333 YP_002265301.1 CDS VSAL_II1022 NC_011313.1 1119247 1121133 D Expression may be regulated by Fur; methyl-accepting chemotaxis protein 1119247..1121133 Aliivibrio salmonicida LFI1238 6962334 YP_002265302.1 CDS VSAL_II1023 NC_011313.1 1121163 1121333 R hypothetical protein complement(1121163..1121333) Aliivibrio salmonicida LFI1238 6962335 YP_002265303.1 CDS VSAL_II1024 NC_011313.1 1121857 1123179 R Similar to Bacillus subtilis Probable 6-phospho-beta-glucosidase LicH UniProt:P46320 (442 aa) fasta scores: E()=1.1e-82, 48.526% id in 441 aa; putative 6-phospho-beta-glucosidase complement(1121857..1123179) Aliivibrio salmonicida LFI1238 6962336 YP_002265304.1 CDS VSAL_II1025 NC_011313.1 1123301 1124218 D Similar to Escherichia coli HTH-type transcriptional regulator DsdC UniProt:P46068 (311 aa) fasta scores: E()=5.7e-32, 36.877% id in 301 aa; LysR family transcriptional regulator 1123301..1124218 Aliivibrio salmonicida LFI1238 6962337 YP_002265305.1 CDS VSAL_II1026 NC_011313.1 1124238 1125275 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II complement(1124238..1125275) Aliivibrio salmonicida LFI1238 6962338 YP_002265306.1 CDS VSAL_II1027 NC_011313.1 1125648 1126715 D hypothetical protein 1125648..1126715 Aliivibrio salmonicida LFI1238 6962339 YP_002265307.1 CDS VSAL_II1028 NC_011313.1 1126724 1127530 D hypothetical protein 1126724..1127530 Aliivibrio salmonicida LFI1238 6962340 YP_002265308.1 CDS VSAL_II1029 NC_011313.1 1127527 1128414 D binding-protein-dependent transport system,inner membrane component 1127527..1128414 Aliivibrio salmonicida LFI1238 6962341 YP_002265309.1 CDS VSAL_II1030 NC_011313.1 1128401 1129189 D binding-protein-dependent transport system,inner membrane component 1128401..1129189 Aliivibrio salmonicida LFI1238 6962342 YP_002265310.1 CDS VSAL_II1031 NC_011313.1 1129186 1130205 D ABC transporter ATP-binding protein 1129186..1130205 Aliivibrio salmonicida LFI1238 6962343 YP_002265311.1 CDS VSAL_II1032 NC_011313.1 1130207 1130872 D hypothetical protein 1130207..1130872 Aliivibrio salmonicida LFI1238 6962344 YP_002265312.1 CDS VSAL_II1033 NC_011313.1 1130903 1131112 R hypothetical protein complement(1130903..1131112) Aliivibrio salmonicida LFI1238 6962345 YP_002265313.1 CDS cspG NC_011313.1 1131404 1131613 R Expression may be regulated by Fur; cold shock-like protein CspG complement(1131404..1131613) Aliivibrio salmonicida LFI1238 6962346 YP_002265314.1 CDS VSAL_II1035 NC_011313.1 1132091 1132297 D Expression may be regulated by Fur; membrane protein 1132091..1132297 Aliivibrio salmonicida LFI1238 6962445 YP_002265315.1 CDS VSAL_II1036 NC_011313.1 1132374 1133978 R Similar to Escherichia coli Small-conductance mechanosensitive channel MscS UniProt:Q2M9R8 (286 aa) fasta scores: E()=5.4e-26, 33.457% id in 269 aa; putative mechanosensitive ion channel protein complement(1132374..1133978) Aliivibrio salmonicida LFI1238 6962347 YP_002265316.1 CDS VSAL_II1037 NC_011313.1 1134318 1134716 R Similar to Vibrio fischeri Hypothetical protein. UniProt:Q5DYG8 (173 aa) fasta scores: E()=2.3e-39, 83.333% id in 132 aa. The CDS appears to be truncated at the N-terminus; hypothetical protein complement(1134318..1134716) Aliivibrio salmonicida LFI1238 6962348 YP_002265317.1 CDS VSAL_II1038 NC_011313.1 1134865 1135275 R putative glyoxalase I complement(1134865..1135275) Aliivibrio salmonicida LFI1238 6962349 YP_002265318.1 CDS VSAL_II1040 NC_011313.1 1136308 1137156 R membrane protein complement(1136308..1137156) Aliivibrio salmonicida LFI1238 6962351 YP_002265319.1 CDS VSAL_II1041 NC_011313.1 1137283 1137870 R transmembrane transporter protein, LysE type translocator complement(1137283..1137870) Aliivibrio salmonicida LFI1238 6962352 YP_002265320.1 CDS VSAL_II1042 NC_011313.1 1137980 1138423 D Similar to Klebsiella aerogenes Leucine-responsive regulatory protein Lrp UniProt:P0A2S1 (163 aa) fasta scores: E()=9.4e-15, 38.462% id in 143 aa; AsnC family transcriptional regulator 1137980..1138423 Aliivibrio salmonicida LFI1238 6962353 YP_002265321.1 CDS VSAL_II1043 NC_011313.1 1138420 1139103 R putative cation efflux pump complement(1138420..1139103) Aliivibrio salmonicida LFI1238 6962354 YP_002265322.1 CDS VSAL_II1044 NC_011313.1 1139254 1140138 D LysR family transcriptional regulator 1139254..1140138 Aliivibrio salmonicida LFI1238 6962355 YP_002265323.1 CDS VSAL_II1045 NC_011313.1 1140274 1141248 R hypothetical protein complement(1140274..1141248) Aliivibrio salmonicida LFI1238 6962356 YP_002265324.1 CDS VSAL_II1046 NC_011313.1 1141263 1141955 R hypothetical protein complement(1141263..1141955) Aliivibrio salmonicida LFI1238 6962357 YP_002265325.1 CDS VSAL_II1048 NC_011313.1 1143436 1144629 D transposase 1143436..1144629 Aliivibrio salmonicida LFI1238 6962359 YP_002265326.1 CDS VSAL_II1050 NC_011313.1 1145241 1146728 D transposase 1145241..1146728 Aliivibrio salmonicida LFI1238 6962361 YP_002265327.1 CDS VSAL_II1052 NC_011313.1 1147458 1148420 R Expression may be regulated by Fur; hypothetical protein complement(1147458..1148420) Aliivibrio salmonicida LFI1238 6962363 YP_002265328.1 CDS VSAL_II1053 NC_011313.1 1149059 1149637 D hypothetical protein 1149059..1149637 Aliivibrio salmonicida LFI1238 6962364 YP_002265329.1 CDS VSAL_II1054 NC_011313.1 1149643 1150770 R hypothetical protein complement(1149643..1150770) Aliivibrio salmonicida LFI1238 6962365 YP_002265330.1 CDS VSAL_II1055 NC_011313.1 1151000 1151827 R putative membrane associated protease complement(1151000..1151827) Aliivibrio salmonicida LFI1238 6962366 YP_002265331.1 CDS VSAL_II1056 NC_011313.1 1152006 1152356 R putative rhodanese-related sulfurtransferase complement(1152006..1152356) Aliivibrio salmonicida LFI1238 6962367 YP_002265332.1 CDS VSAL_II1057 NC_011313.1 1152567 1153679 D Similar to Thermoanaerobacter brockii NADH oxidase UniProt:P32382 (651 aa) fasta scores: E()=1.8e-34, 36.103% id in 349 aa; NADH oxidase 1152567..1153679 Aliivibrio salmonicida LFI1238 6962368 YP_002265333.1 CDS VSAL_II1059 NC_011313.1 1153874 1154440 R transposase complement(1153874..1154440) Aliivibrio salmonicida LFI1238 6962370 YP_002265334.1 CDS VSAL_II1060 NC_011313.1 1154458 1154880 R transposase complement(1154458..1154880) Aliivibrio salmonicida LFI1238 6962371 YP_002265335.1 CDS VSAL_II1061 NC_011313.1 1155040 1156281 D membrane associated GGDEF protein 1155040..1156281 Aliivibrio salmonicida LFI1238 6962372 YP_002265336.1 CDS VSAL_II1062 NC_011313.1 1156460 1157008 R Expression may be regulated by Fur; membrane protein complement(1156460..1157008) Aliivibrio salmonicida LFI1238 6962373 YP_002265337.1 CDS VSAL_II1064 NC_011313.1 1158280 1158846 R transposase complement(1158280..1158846) Aliivibrio salmonicida LFI1238 6962375 YP_002265338.1 CDS VSAL_II1065 NC_011313.1 1158864 1159286 R transposase complement(1158864..1159286) Aliivibrio salmonicida LFI1238 6962376 YP_002265339.1 CDS speF NC_011313.1 1159759 1161951 D ornithine decarboxylase 1159759..1161951 Aliivibrio salmonicida LFI1238 6962377 YP_002265340.1 CDS potE NC_011313.1 1162002 1163321 D catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 1162002..1163321 Aliivibrio salmonicida LFI1238 6962588 YP_002265341.1 CDS VSAL_II1068 NC_011313.1 1163634 1164245 R hypothetical protein complement(1163634..1164245) Aliivibrio salmonicida LFI1238 6962555 YP_002265342.1 CDS VSAL_II1070 NC_011313.1 1165426 1166634 D MFS transporter 1165426..1166634 Aliivibrio salmonicida LFI1238 6962379 YP_002265343.1 CDS VSAL_II1071 NC_011313.1 1166647 1168224 R membrane associated GGDEF protein complement(1166647..1168224) Aliivibrio salmonicida LFI1238 6962380 YP_002265344.1 CDS VSAL_II1072 NC_011313.1 1168581 1169120 R putative cobalamin adenosyltransferase complement(1168581..1169120) Aliivibrio salmonicida LFI1238 6962381 YP_002265345.1 CDS VSAL_II1073 NC_011313.1 1169174 1169761 R membrane protein complement(1169174..1169761) Aliivibrio salmonicida LFI1238 6962382 YP_002265346.1 CDS VSAL_II1074 NC_011313.1 1170040 1170957 D putative iron transporterer, plasmic binding protein 1170040..1170957 Aliivibrio salmonicida LFI1238 6962383 YP_002265347.1 CDS VSAL_II1075 NC_011313.1 1170954 1171997 D Similar to Yersinia enterocolitica Hemin permease HemU UniProt:P74980 (334 aa) fasta scores: E()=4.5e-34,42.160% id in 287 aa; putative iron transporter, membrane component 1170954..1171997 Aliivibrio salmonicida LFI1238 6962384 YP_002265348.1 CDS VSAL_II1076 NC_011313.1 1171994 1172773 D Similar to Pseudomonas aeruginosa ATPase component (Probable ATP-binding component of ABC transporter) PhuV UniProt:O68877 (255 aa) fasta scores: E()=2.1e-23, 37.209% id in 258 aa; putative iron transporter ATP-binding protein 1171994..1172773 Aliivibrio salmonicida LFI1238 6962385 YP_002265349.1 CDS sdaA NC_011313.1 1172856 1174232 R L-serine dehydratase complement(1172856..1174232) Aliivibrio salmonicida LFI1238 6962386 YP_002265350.1 CDS frp NC_011313.1 1175573 1176295 R NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A complement(1175573..1176295) Aliivibrio salmonicida LFI1238 6962387 YP_002265351.1 CDS VSAL_II1080 NC_011313.1 1176491 1177060 R membrane protein complement(1176491..1177060) Aliivibrio salmonicida LFI1238 6962462 YP_002265352.1 CDS VSAL_II1081 NC_011313.1 1177432 1178340 D LysR family transcriptional regulator 1177432..1178340 Aliivibrio salmonicida LFI1238 6962429 YP_002265353.1 CDS VSAL_II1082 NC_011313.1 1178465 1179421 D transposase 1178465..1179421 Aliivibrio salmonicida LFI1238 6962389 YP_002265354.1 CDS VSAL_II1083 NC_011313.1 1179485 1180249 D hypothetical protein 1179485..1180249 Aliivibrio salmonicida LFI1238 6962390 YP_002265355.1 CDS VSAL_II1084 NC_011313.1 1180293 1181204 R putative 4Fe-4S ferredoxin, iron-sulfur binding complement(1180293..1181204) Aliivibrio salmonicida LFI1238 6962391 YP_002265356.1 CDS VSAL_II1086 NC_011313.1 1181852 1183045 D transposase 1181852..1183045 Aliivibrio salmonicida LFI1238 6962393 YP_002265357.1 CDS VSAL_II1088 NC_011313.1 1184192 1184797 R hypothetical protein complement(1184192..1184797) Aliivibrio salmonicida LFI1238 6962395 YP_002265358.1 CDS VSAL_II1090 NC_011313.1 1185580 1187067 R transposase complement(1185580..1187067) Aliivibrio salmonicida LFI1238 6962397 YP_002265359.1 CDS VSAL_II1091 NC_011313.1 1187139 1187486 R transposase complement(1187139..1187486) Aliivibrio salmonicida LFI1238 6962398 YP_002265360.1 CDS VSAL_II1093 NC_011313.1 1188040 1188537 R hypothetical protein complement(1188040..1188537) Aliivibrio salmonicida LFI1238 6962430 YP_002265361.1 CDS VSAL_II1094 NC_011313.1 1188651 1189595 R protein alx complement(1188651..1189595) Aliivibrio salmonicida LFI1238 6962401 YP_002265362.1 CDS VSAL_II1095 NC_011313.1 1189986 1191149 D hypothetical protein 1189986..1191149 Aliivibrio salmonicida LFI1238 6962402 YP_002265363.1 CDS VSAL_II1097 NC_011313.1 1193610 1194803 D transposase 1193610..1194803 Aliivibrio salmonicida LFI1238 6962404 YP_002265364.1 CDS VSAL_II1098 NC_011313.1 1194983 1197106 R Similar to Bordetella pertussis CyaB UniProt:P18770 (712 aa) fasta scores: E()=5.1e-51, 30.273% id in 697 aa; ABC transporter ATP-binding protein complement(1194983..1197106) Aliivibrio salmonicida LFI1238 6962405 YP_002265365.1 CDS VSAL_II1099 NC_011313.1 1197099 1199024 R membrane signal transduction protein complement(1197099..1199024) Aliivibrio salmonicida LFI1238 6962406 YP_002265366.1 CDS VSAL_II1101 NC_011313.1 1199722 1201113 R Expression may be regulated by Fur; secretion protein, HlyD family complement(1199722..1201113) Aliivibrio salmonicida LFI1238 6962408 YP_002265367.1 CDS VSAL_II1102 NC_011313.1 1201326 1203479 R putative exported ATPase protein complement(1201326..1203479) Aliivibrio salmonicida LFI1238 6962409 YP_002265368.1 CDS VSAL_II1103 NC_011313.1 1203582 1204154 D hypothetical protein 1203582..1204154 Aliivibrio salmonicida LFI1238 6962410 YP_002265369.1 CDS VSAL_II1104 NC_011313.1 1204240 1205214 R Similar to Yersinia pestis Plasmid partitioning control protein SopB UniProt:O68706 (320 aa) fasta scores: E()=3.4e-14, 32.273% id in 220 aa; putative plasmid partition protein complement(1204240..1205214) Aliivibrio salmonicida LFI1238 6962411 YP_002265370.1 CDS parA NC_011313.1 1205218 1206441 R Similar to Proteus vulgaris ParA UniProt:Q8L255 (401 aa) fasta scores: E()=2.4e-25, 29.412% id in 391 aa; putative plasmid partition protein complement(1205218..1206441) Aliivibrio salmonicida LFI1238 6962412 YP_002265371.1 CDS VSAL_p320_01 NC_011314.1 127 336 R hypothetical protein complement(127..336) Aliivibrio salmonicida LFI1238 6962653 YP_002265372.1 CDS VSAL_p320_02 NC_011314.1 417 1130 R hypothetical protein complement(417..1130) Aliivibrio salmonicida LFI1238 6962622 YP_002265373.1 CDS VSAL_p320_03 NC_011314.1 1404 2033 D Similar to Escherichia coli Resolvase parA UniProt:P22996 (219 aa) fasta scores: E()=1.6e-17, 38.308% id in 201 aa; resolvase 1404..2033 Aliivibrio salmonicida LFI1238 6962623 YP_002265374.1 CDS VSAL_p320_04 NC_011314.1 2052 2363 R hypothetical protein complement(2052..2363) Aliivibrio salmonicida LFI1238 6962624 YP_002265375.1 CDS VSAL_p320_05 NC_011314.1 2356 2643 R Similar to Vibrio fischeri Hypothetical protein UniProt:Q5DYK6 (80 aa) fasta scores: E()=1.7e-22, 76.923% id in 78 aa. Orthologues are identified on chromosomal DNA in other vibrios; hypothetical protein complement(2356..2643) Aliivibrio salmonicida LFI1238 6962625 YP_002265376.1 CDS VSAL_p320_06 NC_011314.1 2975 3964 R membrane protein complement(2975..3964) Aliivibrio salmonicida LFI1238 6962626 YP_002265377.1 CDS VSAL_p320_07 NC_011314.1 4063 4302 R hypothetical protein complement(4063..4302) Aliivibrio salmonicida LFI1238 6962627 YP_002265378.1 CDS VSAL_p320_08 NC_011314.1 4334 4969 R DNA-binding protein, putative plasmid partition protein complement(4334..4969) Aliivibrio salmonicida LFI1238 6962628 YP_002265379.1 CDS VSAL_p320_09 NC_011314.1 5190 5381 D hypothetical protein 5190..5381 Aliivibrio salmonicida LFI1238 6962629 YP_002265380.1 CDS VSAL_p320_10 NC_011314.1 5398 5991 R hypothetical protein complement(5398..5991) Aliivibrio salmonicida LFI1238 6962630 YP_002265381.1 CDS VSAL_p320_11 NC_011314.1 6403 6702 R putative DNA-damage-inducible protein complement(6403..6702) Aliivibrio salmonicida LFI1238 6962631 YP_002265382.1 CDS VSAL_p320_12 NC_011314.1 7493 8353 R hypothetical protein complement(7493..8353) Aliivibrio salmonicida LFI1238 6962632 YP_002265383.1 CDS VSAL_p320_13 NC_011314.1 8744 9361 R Similar to Bacteriophage phi-80 Repressor protein CI UniProt:P14819 (235 aa) fasta scores: E()=1.5e-07,29.060% id in 234 aa; putative peptidase, S24-like complement(8744..9361) Aliivibrio salmonicida LFI1238 6962633 YP_002265384.1 CDS VSAL_p320_14 NC_011314.1 9539 9706 D hypothetical protein 9539..9706 Aliivibrio salmonicida LFI1238 6962634 YP_002265385.1 CDS VSAL_p320_15 NC_011314.1 10109 10279 D hypothetical protein 10109..10279 Aliivibrio salmonicida LFI1238 6962635 YP_002265386.1 CDS VSAL_p320_16 NC_011314.1 10515 11087 D hypothetical protein 10515..11087 Aliivibrio salmonicida LFI1238 6962636 YP_002265387.1 CDS VSAL_p320_18 NC_011314.1 11555 12634 D Identical to Aliivibrio salmonicida Plasmid pVS43 Putative transposase UniProt:Q5EJX2 (359 aa) fasta scores: E()=2.3e-156, 99.721% id in 359 aa; putative transposase 11555..12634 Aliivibrio salmonicida LFI1238 6962638 YP_002265388.1 CDS VSAL_p320_19 NC_011314.1 13144 14130 R putative antirestriction protein complement(13144..14130) Aliivibrio salmonicida LFI1238 6962639 YP_002265389.1 CDS VSAL_p320_20 NC_011314.1 14093 14638 R CDS contains a rare Valine start codon (GTA); hypothetical protein complement(14093..14638) Aliivibrio salmonicida LFI1238 6962640 YP_002265390.1 CDS VSAL_p320_21 NC_011314.1 15125 15391 R hypothetical protein complement(15125..15391) Aliivibrio salmonicida LFI1238 6962641 YP_002265391.1 CDS VSAL_p320_22 NC_011314.1 15528 16211 D hypothetical protein 15528..16211 Aliivibrio salmonicida LFI1238 6962642 YP_002265392.1 CDS VSAL_p320_23 NC_011314.1 16310 16576 R hypothetical protein complement(16310..16576) Aliivibrio salmonicida LFI1238 6962643 YP_002265393.1 CDS VSAL_p320_24 NC_011314.1 16858 19917 D Weakly similar to Enterococcus faecium Transposase for transposon Tn1546 UniProt:Q06238 (988 aa) fasta scores: E()=5.5e-41, 25.488% id in 1024 aa; transposase 16858..19917 Aliivibrio salmonicida LFI1238 6962644 YP_002265394.1 CDS VSAL_p320_26 NC_011314.1 21116 22195 R Identical to Aliivibrio salmonicida Plasmid pVS43 Putative transposase UniProt:Q5EJX2 (359 aa) fasta scores: E()=2.3e-156, 99.721% id in 359 aa; putative transposase complement(21116..22195) Aliivibrio salmonicida LFI1238 6962652 YP_002265395.1 CDS VSAL_p320_27 NC_011314.1 22851 23915 D Experimentally shown to be regulated by iron. Predicted Fur boxes indicate direct Fur regulation; iron ion ABC transporter, periplasmic component 22851..23915 Aliivibrio salmonicida LFI1238 6962646 YP_002265396.1 CDS VSAL_p320_28 NC_011314.1 23912 24955 D Similar to Gluconacetobacter diazotrophicus ABC-type Fe3+ transport system permease component FeuB UniProt:Q288C8 (342 aa) fasta scores: E()=1.8e-30, 37.771% id in 323 aa; iron ion transport system, inner membrane component 23912..24955 Aliivibrio salmonicida LFI1238 6962647 YP_002265397.1 CDS VSAL_p320_29 NC_011314.1 24948 25694 D iron ion ABC transporter ATP-binding protein 24948..25694 Aliivibrio salmonicida LFI1238 6962648 YP_002265398.1 CDS VSAL_p320_30 NC_011314.1 25691 26980 D hypothetical protein 25691..26980 Aliivibrio salmonicida LFI1238 6962649 YP_002265399.1 CDS VSAL_p320_31 NC_011314.1 27160 28497 R putative phage intergrase complement(27160..28497) Aliivibrio salmonicida LFI1238 6962650 YP_002265400.1 CDS repZ NC_011315.1 346 1212 D Weakly similar to Plasmid ColIb-P9 Replication initiation protein RepZ UniProt:Q7DJZ7 (343 aa) fasta scores: E()=0.06, 24.111% id in 253 aa; putative replication initiation protein 346..1212 Aliivibrio salmonicida LFI1238 6989608 YP_002265401.1 CDS VSAL_p54_02 NC_011315.1 1648 2388 R Similar to Escherichia coli MobC-like protein UniProt:Q6XGE7 (248 aa) fasta scores: E()=0.0018, 25.692% id in 253 aa; putative mobilization protein complement(1648..2388) Aliivibrio salmonicida LFI1238 6989604 YP_002265402.1 CDS VSAL_p54_03 NC_011315.1 3432 5360 D Weakly similar to Salmonella typhimurium O-antigen acetylase OafA UniProt:P74874 (609 aa) fasta scores: E()=6.3e-54, 33.591% id in 646 aa; acyltransferase 3432..5360 Aliivibrio salmonicida LFI1238 6989606 YP_002265403.1 CDS repA NC_011316.1 281 940 D putative replication initiation protein 281..940 Aliivibrio salmonicida LFI1238 6962657 YP_002265404.1 CDS VSAL_p43_02 NC_011316.1 1028 1993 R Weakly similar to Bacteriophage Sf6 O-acetyl transferase UniProt:P23214 (333 aa) fasta scores: E()=4.2e-11, 28.614% id in 339 aa; acetyltransferase complement(1028..1993) Aliivibrio salmonicida LFI1238 6962656 YP_002265405.1 CDS VSAL_p43_03 NC_011316.1 2287 3366 D transposase, IS91 family 2287..3366 Aliivibrio salmonicida LFI1238 6962655 VSAL_I3075t tRNA VSAL_I3075t NC_011312.1 94110 94183 D tRNA-Ile 94110..94183 Aliivibrio salmonicida LFI1238 6988064 VSAL_I3076t tRNA VSAL_I3076t NC_011312.1 94226 94298 D tRNA-Ala 94226..94298 Aliivibrio salmonicida LFI1238 6988065 VSAL_I3080t tRNA VSAL_I3080t NC_011312.1 99711 99783 D tRNA-Glu 99711..99783 Aliivibrio salmonicida LFI1238 6988069 VSAL_I3081t tRNA VSAL_I3081t NC_011312.1 99789 99861 D tRNA-Lys 99789..99861 Aliivibrio salmonicida LFI1238 6988070 VSAL_I3082t tRNA VSAL_I3082t NC_011312.1 99896 99968 D tRNA-Val 99896..99968 Aliivibrio salmonicida LFI1238 6988071 VSAL_I3086t tRNA VSAL_I3086t NC_011312.1 105384 105456 D tRNA-Glu 105384..105456 Aliivibrio salmonicida LFI1238 6988075 VSAL_I3087t tRNA VSAL_I3087t NC_011312.1 105462 105534 D tRNA-Lys 105462..105534 Aliivibrio salmonicida LFI1238 6988076 VSAL_I3088t tRNA VSAL_I3088t NC_011312.1 105562 105634 D tRNA-Ala 105562..105634 Aliivibrio salmonicida LFI1238 6988077 VSAL_I3089t tRNA VSAL_I3089t NC_011312.1 105669 105741 D tRNA-Val 105669..105741 Aliivibrio salmonicida LFI1238 6988078 VSAL_I3095t tRNA VSAL_I3095t NC_011312.1 114553 114626 D tRNA-Thr 114553..114626 Aliivibrio salmonicida LFI1238 6988084 VSAL_I3097t tRNA VSAL_I3097t NC_011312.1 125523 125596 D tRNA-Arg 125523..125596 Aliivibrio salmonicida LFI1238 6986307 VSAL_I3098t tRNA VSAL_I3098t NC_011312.1 125644 125716 D tRNA-His 125644..125716 Aliivibrio salmonicida LFI1238 6988087 VSAL_I3099t tRNA VSAL_I3099t NC_011312.1 125805 125878 D tRNA-Pro 125805..125878 Aliivibrio salmonicida LFI1238 6988088 VSAL_I3100t tRNA VSAL_I3100t NC_011312.1 125924 125996 D tRNA-His 125924..125996 Aliivibrio salmonicida LFI1238 6988089 VSAL_I3101t tRNA VSAL_I3101t NC_011312.1 126084 126157 D tRNA-Pro 126084..126157 Aliivibrio salmonicida LFI1238 6988090 VSAL_I3111t tRNA VSAL_I3111t NC_011312.1 480806 480879 D tRNA-Ile 480806..480879 Aliivibrio salmonicida LFI1238 6988097 VSAL_I3112t tRNA VSAL_I3112t NC_011312.1 480922 480994 D tRNA-Ala 480922..480994 Aliivibrio salmonicida LFI1238 6988098 VSAL_I3115t tRNA VSAL_I3115t NC_011312.1 484466 484539 D tRNA-Asp 484466..484539 Aliivibrio salmonicida LFI1238 6988101 VSAL_I3117t tRNA VSAL_I3117t NC_011312.1 586390 586471 D tRNA-Leu 586390..586471 Aliivibrio salmonicida LFI1238 6986541 VSAL_I3118t tRNA VSAL_I3118t NC_011312.1 587496 587568 R tRNA-Asn complement(587496..587568) Aliivibrio salmonicida LFI1238 6988405 VSAL_I3119t tRNA VSAL_I3119t NC_011312.1 587579 587651 R tRNA-Phe complement(587579..587651) Aliivibrio salmonicida LFI1238 6988105 VSAL_I3120t tRNA VSAL_I3120t NC_011312.1 587662 587734 R tRNA-Thr complement(587662..587734) Aliivibrio salmonicida LFI1238 6988106 VSAL_I3121t tRNA VSAL_I3121t NC_011312.1 587814 587886 R tRNA-Asn complement(587814..587886) Aliivibrio salmonicida LFI1238 6988107 VSAL_I3122t tRNA VSAL_I3122t NC_011312.1 587896 587968 R tRNA-Phe complement(587896..587968) Aliivibrio salmonicida LFI1238 6988108 VSAL_I3123t tRNA VSAL_I3123t NC_011312.1 587979 588051 R tRNA-Thr complement(587979..588051) Aliivibrio salmonicida LFI1238 6988109 VSAL_I3124t tRNA VSAL_I3124t NC_011312.1 588131 588203 R tRNA-Phe complement(588131..588203) Aliivibrio salmonicida LFI1238 6988110 VSAL_I3125t tRNA VSAL_I3125t NC_011312.1 657564 657645 D tRNA-Leu 657564..657645 Aliivibrio salmonicida LFI1238 6989236 VSAL_I3126t tRNA VSAL_I3126t NC_011312.1 657719 657792 D tRNA-Met 657719..657792 Aliivibrio salmonicida LFI1238 6988112 VSAL_I3128t tRNA VSAL_I3128t NC_011312.1 707891 707980 D tRNA-Ser 707891..707980 Aliivibrio salmonicida LFI1238 6988357 VSAL_I3129t tRNA VSAL_I3129t NC_011312.1 708037 708110 D tRNA-Arg 708037..708110 Aliivibrio salmonicida LFI1238 6988115 VSAL_I3130t tRNA VSAL_I3130t NC_011312.1 708186 708275 D tRNA-Ser 708186..708275 Aliivibrio salmonicida LFI1238 6988116 VSAL_I3131t tRNA VSAL_I3131t NC_011312.1 708331 708404 D tRNA-Arg 708331..708404 Aliivibrio salmonicida LFI1238 6988117 VSAL_I3132t tRNA VSAL_I3132t NC_011312.1 708474 708547 D tRNA-Arg 708474..708547 Aliivibrio salmonicida LFI1238 6988118 VSAL_I3133t tRNA VSAL_I3133t NC_011312.1 708617 708690 D tRNA-Arg 708617..708690 Aliivibrio salmonicida LFI1238 6988119 VSAL_I3134t tRNA VSAL_I3134t NC_011312.1 708760 708833 D tRNA-Arg 708760..708833 Aliivibrio salmonicida LFI1238 6988120 VSAL_I3135t tRNA VSAL_I3135t NC_011312.1 708902 708975 D tRNA-Arg 708902..708975 Aliivibrio salmonicida LFI1238 6988121 VSAL_I3137t tRNA VSAL_I3137t NC_011312.1 742871 742943 D tRNA-Ala 742871..742943 Aliivibrio salmonicida LFI1238 6988123 VSAL_I3140t tRNA VSAL_I3140t NC_011312.1 746419 746492 D tRNA-Asp 746419..746492 Aliivibrio salmonicida LFI1238 6988126 VSAL_I3141t tRNA VSAL_I3141t NC_011312.1 746534 746607 D tRNA-Trp 746534..746607 Aliivibrio salmonicida LFI1238 6988127 VSAL_I3143t tRNA VSAL_I3143t NC_011312.1 868719 868790 R tRNA-Gln complement(868719..868790) Aliivibrio salmonicida LFI1238 6986665 VSAL_I3144t tRNA VSAL_I3144t NC_011312.1 868844 868925 R tRNA-Leu complement(868844..868925) Aliivibrio salmonicida LFI1238 6988129 VSAL_I3145t tRNA VSAL_I3145t NC_011312.1 869045 869116 R tRNA-Gln complement(869045..869116) Aliivibrio salmonicida LFI1238 6988130 VSAL_I3146t tRNA VSAL_I3146t NC_011312.1 869170 869251 R tRNA-Leu complement(869170..869251) Aliivibrio salmonicida LFI1238 6988131 VSAL_I3147t tRNA VSAL_I3147t NC_011312.1 869371 869442 R tRNA-Gln complement(869371..869442) Aliivibrio salmonicida LFI1238 6988132 VSAL_I3148t tRNA VSAL_I3148t NC_011312.1 869496 869577 R tRNA-Leu complement(869496..869577) Aliivibrio salmonicida LFI1238 6988133 VSAL_I3149t tRNA VSAL_I3149t NC_011312.1 869657 869730 R tRNA-Met complement(869657..869730) Aliivibrio salmonicida LFI1238 6988134 VSAL_I3150t tRNA VSAL_I3150t NC_011312.1 869766 869847 R tRNA-Leu complement(869766..869847) Aliivibrio salmonicida LFI1238 6988135 VSAL_I3151t tRNA VSAL_I3151t NC_011312.1 869910 869967 R tRNA-Gln complement(869910..869967) Aliivibrio salmonicida LFI1238 6988136 VSAL_I3152t tRNA VSAL_I3152t NC_011312.1 869967 870038 R tRNA-Gln complement(869967..870038) Aliivibrio salmonicida LFI1238 6988137 VSAL_I3153t tRNA VSAL_I3153t NC_011312.1 870092 870173 R tRNA-Leu complement(870092..870173) Aliivibrio salmonicida LFI1238 6988138 VSAL_I3154t tRNA VSAL_I3154t NC_011312.1 870276 870349 R tRNA-Met complement(870276..870349) Aliivibrio salmonicida LFI1238 6988139 VSAL_I3155t tRNA VSAL_I3155t NC_011312.1 889776 889849 D tRNA-Pro 889776..889849 Aliivibrio salmonicida LFI1238 6988928 VSAL_I3157t tRNA VSAL_I3157t NC_011312.1 1147580 1147667 R tRNA-Ser complement(1147580..1147667) Aliivibrio salmonicida LFI1238 6986825 VSAL_I3158t tRNA VSAL_I3158t NC_011312.1 1148968 1149041 R tRNA-Asp complement(1148968..1149041) Aliivibrio salmonicida LFI1238 6988299 VSAL_I3159t tRNA VSAL_I3159t NC_011312.1 1149083 1149170 R tRNA-Ser complement(1149083..1149170) Aliivibrio salmonicida LFI1238 6988144 VSAL_I3161t tRNA VSAL_I3161t NC_011312.1 1831817 1831889 R tRNA-Val complement(1831817..1831889) Aliivibrio salmonicida LFI1238 6988719 VSAL_I3164t tRNA VSAL_I3164t NC_011312.1 2007115 2007187 R tRNA-Asn complement(2007115..2007187) Aliivibrio salmonicida LFI1238 6989131 VSAL_I3166t tRNA VSAL_I3166t NC_011312.1 2043422 2043506 D tRNA-Ser 2043422..2043506 Aliivibrio salmonicida LFI1238 6987447 VSAL_I3167t tRNA VSAL_I3167t NC_011312.1 2103604 2103684 R tRNA-Tyr complement(2103604..2103684) Aliivibrio salmonicida LFI1238 6989422 VSAL_I3168t tRNA VSAL_I3168t NC_011312.1 2103776 2103856 R tRNA-Tyr complement(2103776..2103856) Aliivibrio salmonicida LFI1238 6988152 VSAL_I3169t tRNA VSAL_I3169t NC_011312.1 2103947 2104027 R tRNA-Tyr complement(2103947..2104027) Aliivibrio salmonicida LFI1238 6988153 VSAL_I3170t tRNA VSAL_I3170t NC_011312.1 2130367 2130437 D tRNA-Cys 2130367..2130437 Aliivibrio salmonicida LFI1238 6989113 VSAL_I3171t tRNA VSAL_I3171t NC_011312.1 2130546 2130629 D tRNA-Leu 2130546..2130629 Aliivibrio salmonicida LFI1238 6988155 VSAL_I3173t tRNA VSAL_I3173t NC_011312.1 2293474 2293546 R tRNA-Gly complement(2293474..2293546) Aliivibrio salmonicida LFI1238 6987614 VSAL_I3174t tRNA VSAL_I3174t NC_011312.1 2293584 2293667 R tRNA-Leu complement(2293584..2293667) Aliivibrio salmonicida LFI1238 6988158 VSAL_I3175t tRNA VSAL_I3175t NC_011312.1 2293779 2293851 R tRNA-Gly complement(2293779..2293851) Aliivibrio salmonicida LFI1238 6988159 VSAL_I3176t tRNA VSAL_I3176t NC_011312.1 2293858 2293928 R tRNA-Cys complement(2293858..2293928) Aliivibrio salmonicida LFI1238 6988160 VSAL_I3177t tRNA VSAL_I3177t NC_011312.1 2377576 2377649 D tRNA-Arg 2377576..2377649 Aliivibrio salmonicida LFI1238 6988555 VSAL_I3181t tRNA VSAL_I3181t NC_011312.1 2752020 2752093 R tRNA-Asp complement(2752020..2752093) Aliivibrio salmonicida LFI1238 6987819 VSAL_I3185t tRNA VSAL_I3185t NC_011312.1 2807345 2807419 R tRNA-Asp complement(2807345..2807419) Aliivibrio salmonicida LFI1238 6987842 VSAL_I3188t tRNA VSAL_I3188t NC_011312.1 2810890 2810962 R tRNA-Val complement(2810890..2810962) Aliivibrio salmonicida LFI1238 6988172 VSAL_I3189t tRNA VSAL_I3189t NC_011312.1 2810997 2811069 R tRNA-Lys complement(2810997..2811069) Aliivibrio salmonicida LFI1238 6988173 VSAL_I3190t tRNA VSAL_I3190t NC_011312.1 2811075 2811147 R tRNA-Glu complement(2811075..2811147) Aliivibrio salmonicida LFI1238 6988174 VSAL_I3192t tRNA VSAL_I3192t NC_011312.1 2815256 2815328 R tRNA-Asn complement(2815256..2815328) Aliivibrio salmonicida LFI1238 6987843 VSAL_I3193t tRNA VSAL_I3193t NC_011312.1 2815362 2815434 R tRNA-Thr complement(2815362..2815434) Aliivibrio salmonicida LFI1238 6988177 VSAL_I3194t tRNA VSAL_I3194t NC_011312.1 2815494 2815566 R tRNA-Phe complement(2815494..2815566) Aliivibrio salmonicida LFI1238 6988178 VSAL_I3195t tRNA VSAL_I3195t NC_011312.1 2921109 2921181 D tRNA-Met 2921109..2921181 Aliivibrio salmonicida LFI1238 6989182 VSAL_I3196t tRNA VSAL_I3196t NC_011312.1 3014465 3014537 R tRNA-Gly complement(3014465..3014537) Aliivibrio salmonicida LFI1238 6987915 VSAL_I3197t tRNA VSAL_I3197t NC_011312.1 3014575 3014648 R tRNA-Met complement(3014575..3014648) Aliivibrio salmonicida LFI1238 6988181 VSAL_I3198t tRNA VSAL_I3198t NC_011312.1 3014710 3014782 R tRNA-Gly complement(3014710..3014782) Aliivibrio salmonicida LFI1238 6988182 VSAL_I3199t tRNA VSAL_I3199t NC_011312.1 3014821 3014894 R tRNA-Met complement(3014821..3014894) Aliivibrio salmonicida LFI1238 6988183 VSAL_I3200t tRNA VSAL_I3200t NC_011312.1 3014956 3015028 R tRNA-Gly complement(3014956..3015028) Aliivibrio salmonicida LFI1238 6988184 VSAL_I3201t tRNA VSAL_I3201t NC_011312.1 3015066 3015139 R tRNA-Met complement(3015066..3015139) Aliivibrio salmonicida LFI1238 6988185 VSAL_I3202t tRNA VSAL_I3202t NC_011312.1 3015229 3015301 R tRNA-Gly complement(3015229..3015301) Aliivibrio salmonicida LFI1238 6988186 VSAL_I3203t tRNA VSAL_I3203t NC_011312.1 3015339 3015412 R tRNA-Met complement(3015339..3015412) Aliivibrio salmonicida LFI1238 6988187 VSAL_I3204t tRNA VSAL_I3204t NC_011312.1 3015573 3015646 R tRNA-Met complement(3015573..3015646) Aliivibrio salmonicida LFI1238 6988188 VSAL_I3205t tRNA VSAL_I3205t NC_011312.1 3015703 3015775 R tRNA-Gly complement(3015703..3015775) Aliivibrio salmonicida LFI1238 6988189 VSAL_I3206t tRNA VSAL_I3206t NC_011312.1 3113812 3113883 R tRNA-OTHER complement(3113812..3113883) Aliivibrio salmonicida LFI1238 6989234 VSAL_I3207t tRNA VSAL_I3207t NC_011312.1 3113920 3114000 R tRNA-Tyr complement(3113920..3114000) Aliivibrio salmonicida LFI1238 6988191 VSAL_I3208t tRNA VSAL_I3208t NC_011312.1 3114040 3114112 R tRNA-Thr complement(3114040..3114112) Aliivibrio salmonicida LFI1238 6988192 VSAL_I3209t tRNA VSAL_I3209t NC_011312.1 3122645 3122718 R tRNA-Asp complement(3122645..3122718) Aliivibrio salmonicida LFI1238 6987958 VSAL_I3214t tRNA VSAL_I3214t NC_011312.1 3225685 3225758 D tRNA-Trp 3225685..3225758 Aliivibrio salmonicida LFI1238 6988645 VSAL_II1106t tRNA VSAL_II1106t NC_011313.1 34413 34500 R tRNA-Ser complement(34413..34500) Aliivibrio salmonicida LFI1238 6961518 VSAL_II1107t tRNA VSAL_II1107t NC_011313.1 67436 67508 R tRNA-Asn complement(67436..67508) Aliivibrio salmonicida LFI1238 6961539 VSAL_II1108t tRNA VSAL_II1108t NC_011313.1 67543 67615 R tRNA-Thr complement(67543..67615) Aliivibrio salmonicida LFI1238 6962414 VSAL_II1109t tRNA VSAL_II1109t NC_011313.1 67667 67754 R tRNA-Ser complement(67667..67754) Aliivibrio salmonicida LFI1238 6962415 VSAL_II1110t tRNA VSAL_II1110t NC_011313.1 479617 479690 R tRNA-Asp complement(479617..479690) Aliivibrio salmonicida LFI1238 6961862 VSAL_II1111t tRNA VSAL_II1111t NC_011313.1 479733 479820 R tRNA-Ser complement(479733..479820) Aliivibrio salmonicida LFI1238 6962417 VSAL_II1112t tRNA VSAL_II1112t NC_011313.1 530440 530511 D tRNA-Gly 530440..530511 Aliivibrio salmonicida LFI1238 6961896 VSAL_II1114t tRNA VSAL_II1114t NC_011313.1 914392 914465 R tRNA-Trp complement(914392..914465) Aliivibrio salmonicida LFI1238 6962181 VSAL_II1117t tRNA VSAL_II1117t NC_011313.1 918087 918159 R tRNA-Val complement(918087..918159) Aliivibrio salmonicida LFI1238 6962423 VSAL_II1118t tRNA VSAL_II1118t NC_011313.1 918224 918296 R tRNA-Lys complement(918224..918296) Aliivibrio salmonicida LFI1238 6962424 VSAL_II1119t tRNA VSAL_II1119t NC_011313.1 918319 918391 R tRNA-Glu complement(918319..918391) Aliivibrio salmonicida LFI1238 6962425 VSAL_II1121t tRNA VSAL_II1121t NC_011313.1 928858 928926 R tRNA-OTHER complement(928858..928926) Aliivibrio salmonicida LFI1238 6962186 VSAL_II1123t tRNA VSAL_II1123t NC_011313.1 1187870 1187957 R tRNA-Ser complement(1187870..1187957) Aliivibrio salmonicida LFI1238 6962400 VSAL_I3071r rRNA VSAL_I3071r NC_011312.1 87125 88661 D 16S ribosomal RNA 87125..88661 Aliivibrio salmonicida LFI1238 6986302 VSAL_I3072r rRNA VSAL_I3072r NC_011312.1 88992 91882 D 23S ribosomal RNA 88992..91882 Aliivibrio salmonicida LFI1238 6988061 VSAL_I3073r rRNA VSAL_I3073r NC_011312.1 91976 92095 D 5S ribosomal RNA 91976..92095 Aliivibrio salmonicida LFI1238 6988062 VSAL_I3074r rRNA VSAL_I3074r NC_011312.1 92502 94038 D 16S ribosomal RNA 92502..94038 Aliivibrio salmonicida LFI1238 6988063 VSAL_I3077r rRNA VSAL_I3077r NC_011312.1 94571 97458 D 23S ribosomal RNA 94571..97458 Aliivibrio salmonicida LFI1238 6988066 VSAL_I3078r rRNA VSAL_I3078r NC_011312.1 97552 97671 D 5S ribosomal RNA 97552..97671 Aliivibrio salmonicida LFI1238 6988067 VSAL_I3079r rRNA VSAL_I3079r NC_011312.1 98079 99614 D 16S ribosomal RNA 98079..99614 Aliivibrio salmonicida LFI1238 6988068 VSAL_I3083r rRNA VSAL_I3083r NC_011312.1 100241 103131 D 23S ribosomal RNA 100241..103131 Aliivibrio salmonicida LFI1238 6988072 VSAL_I3084r rRNA VSAL_I3084r NC_011312.1 103225 103344 D 5S ribosomal RNA 103225..103344 Aliivibrio salmonicida LFI1238 6988073 VSAL_I3085r rRNA VSAL_I3085r NC_011312.1 103751 105287 D 16S ribosomal RNA 103751..105287 Aliivibrio salmonicida LFI1238 6988074 VSAL_I3090r rRNA VSAL_I3090r NC_011312.1 106014 108904 D 23S ribosomal RNA 106014..108904 Aliivibrio salmonicida LFI1238 6988079 VSAL_I3091r rRNA VSAL_I3091r NC_011312.1 108998 109117 D 5S ribosomal RNA 108998..109117 Aliivibrio salmonicida LFI1238 6988080 VSAL_I3092r rRNA VSAL_I3092r NC_011312.1 109524 111060 D 16S ribosomal RNA 109524..111060 Aliivibrio salmonicida LFI1238 6988081 VSAL_I3093r rRNA VSAL_I3093r NC_011312.1 111391 114281 D 23S ribosomal RNA 111391..114281 Aliivibrio salmonicida LFI1238 6988082 VSAL_I3094r rRNA VSAL_I3094r NC_011312.1 114375 114494 D 5S ribosomal RNA 114375..114494 Aliivibrio salmonicida LFI1238 6988083 VSAL_I3096r rRNA VSAL_I3096r NC_011312.1 114645 114765 D 5S ribosomal RNA 114645..114765 Aliivibrio salmonicida LFI1238 6988085 VSAL_I3107r rRNA VSAL_I3107r NC_011312.1 473821 475357 D 16S ribosomal RNA 473821..475357 Aliivibrio salmonicida LFI1238 6986492 VSAL_I3108r rRNA VSAL_I3108r NC_011312.1 475688 478578 D 23S ribosomal RNA 475688..478578 Aliivibrio salmonicida LFI1238 6988094 VSAL_I3109r rRNA VSAL_I3109r NC_011312.1 478672 478791 D 5S ribosomal RNA 478672..478791 Aliivibrio salmonicida LFI1238 6988095 VSAL_I3110r rRNA VSAL_I3110r NC_011312.1 479198 480734 D 16S ribosomal RNA 479198..480734 Aliivibrio salmonicida LFI1238 6988096 VSAL_I3113r rRNA VSAL_I3113r NC_011312.1 481267 484157 D 23S ribosomal RNA 481267..484157 Aliivibrio salmonicida LFI1238 6988099 VSAL_I3114r rRNA VSAL_I3114r NC_011312.1 484251 484370 D 5S ribosomal RNA 484251..484370 Aliivibrio salmonicida LFI1238 6988100 VSAL_I3136r rRNA VSAL_I3136r NC_011312.1 741262 742798 D 16S ribosomal RNA 741262..742798 Aliivibrio salmonicida LFI1238 6988332 VSAL_I3138r rRNA VSAL_I3138r NC_011312.1 743221 746110 D 23S ribosomal RNA 743221..746110 Aliivibrio salmonicida LFI1238 6988124 VSAL_I3139r rRNA VSAL_I3139r NC_011312.1 746204 746323 D 5S ribosomal RNA 746204..746323 Aliivibrio salmonicida LFI1238 6988125 VSAL_I3182r rRNA VSAL_I3182r NC_011312.1 2752189 2752308 R 5S ribosomal RNA complement(2752189..2752308) Aliivibrio salmonicida LFI1238 6988166 VSAL_I3183r rRNA VSAL_I3183r NC_011312.1 2752431 2755321 R 23S ribosomal RNA complement(2752431..2755321) Aliivibrio salmonicida LFI1238 6988167 VSAL_I3184r rRNA VSAL_I3184r NC_011312.1 2755652 2757188 R 16S ribosomal RNA complement(2755652..2757188) Aliivibrio salmonicida LFI1238 6988168 VSAL_I3186r rRNA VSAL_I3186r NC_011312.1 2807514 2807633 R 5S ribosomal RNA complement(2807514..2807633) Aliivibrio salmonicida LFI1238 6988170 VSAL_I3187r rRNA VSAL_I3187r NC_011312.1 2807726 2810617 R 23S ribosomal RNA complement(2807726..2810617) Aliivibrio salmonicida LFI1238 6988171 VSAL_I3191r rRNA VSAL_I3191r NC_011312.1 2811244 2812780 R 16S ribosomal RNA complement(2811244..2812780) Aliivibrio salmonicida LFI1238 6988175 VSAL_I3210r rRNA VSAL_I3210r NC_011312.1 3122814 3122934 R 5S ribosomal RNA complement(3122814..3122934) Aliivibrio salmonicida LFI1238 6988194 VSAL_I3211r rRNA VSAL_I3211r NC_011312.1 3123027 3125917 R 23S ribosomal RNA complement(3123027..3125917) Aliivibrio salmonicida LFI1238 6988195 VSAL_I3212r rRNA VSAL_I3212r NC_011312.1 3126248 3127784 R 16S ribosomal RNA complement(3126248..3127784) Aliivibrio salmonicida LFI1238 6988196 VSAL_II1115r rRNA VSAL_II1115r NC_011313.1 914526 914645 R 5S ribosomal RNA complement(914526..914645) Aliivibrio salmonicida LFI1238 6962421 VSAL_II1116r rRNA VSAL_II1116r NC_011313.1 914768 917658 R 23S ribosomal RNA complement(914768..917658) Aliivibrio salmonicida LFI1238 6962422 VSAL_II1120r rRNA VSAL_II1120r NC_011313.1 918479 920015 R 16S ribosomal RNA complement(918479..920015) Aliivibrio salmonicida LFI1238 6962426