-- dump date 20140618_194024 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002261491.1 215778351 6961434 111..281 1 NC_011311.1 Similar to Escherichia coli Protein traY UniProt:P05835 (75 aa) fasta scores: E()=0.0012, 53.846% id in 39 aa; conjugative transfer protein TraY 281 traY 6961434 traY Aliivibrio salmonicida LFI1238 conjugative transfer protein TraY YP_002261491.1 111 D 316275 CDS YP_002261492.1 215778352 6961431 423..704 1 NC_011311.1 Similar to Escherichia coli Fimbrial protein precursor (Pilin) TraA UniProt:P14496 (119 aa) fasta scores: E()=0.11, 35.955% id in 89 aa; conjugative transfer protein TraA, putative fimbrial protein precursor 704 traA 6961431 traA Aliivibrio salmonicida LFI1238 conjugative transfer protein TraA, putative fimbrial protein precursor YP_002261492.1 423 D 316275 CDS YP_002261493.1 215778353 6961489 733..1035 1 NC_011311.1 Similar to Salmonella pullorum Protein TraL UniProt:Q7BCG6 (103 aa) fasta scores: E()=0.0075, 27.174% id in 92 aa; conjugative transfer protein TraL 1035 traL 6961489 traL Aliivibrio salmonicida LFI1238 conjugative transfer protein TraL YP_002261493.1 733 D 316275 CDS YP_002261494.1 215778354 6961427 1035..1595 1 NC_011311.1 Similar to Escherichia coli Protein TraE UniProt:Q46998 (188 aa) fasta scores: E()=4.6e-07, 29.487% id in 156 aa; conjugative transfer protein TraE 1595 traE 6961427 traE Aliivibrio salmonicida LFI1238 conjugative transfer protein TraE YP_002261494.1 1035 D 316275 CDS YP_002261495.1 215778355 6961493 1592..2347 1 NC_011311.1 Similar to Escherichia coli Protein TraK UniProt:Q47003 (242 aa) fasta scores: E()=0.00028, 23.137% id in 255 aa; conjugative transfer protein TraK 2347 traK 6961493 traK Aliivibrio salmonicida LFI1238 conjugative transfer protein TraK YP_002261495.1 1592 D 316275 CDS YP_002261496.1 215778356 6961426 2337..3767 1 NC_011311.1 Similar to Salmonella typhi Protein TraB UniProt:Q8KNL7 (453 aa) fasta scores: E()=3.7e-28, 29.399% id in 466 aa; conjugative transfer protein TraB 3767 traB 6961426 traB Aliivibrio salmonicida LFI1238 conjugative transfer protein TraB YP_002261496.1 2337 D 316275 CDS YP_002261497.1 215778357 6961490 3780..4181 1 NC_011311.1 putative lipoprotein, putative TraV protein 4181 6961490 VSAL_p840_07 Aliivibrio salmonicida LFI1238 putative lipoprotein, putative TraV protein YP_002261497.1 3780 D 316275 CDS YP_002261498.1 215778358 6961435 4191..6722 1 NC_011311.1 Similar to Escherichia coli Protein TraC UniProt:P18004 (875 aa) fasta scores: E()=3.4e-62, 29.870% id in 847 aa; conjugative transfer protein TraC 6722 traC 6961435 traC Aliivibrio salmonicida LFI1238 conjugative transfer protein TraC YP_002261498.1 4191 D 316275 CDS YP_002261499.1 215778359 6961491 6719..7066 1 NC_011311.1 Similar to Salmonella typhi Protein TrbI UniProt:Q8KNL0 (154 aa) fasta scores: E()=3.1e-07, 34.579% id in 107 aa; trbi; conjugative transfer protein TrbI 7066 trbI 6961491 trbI Aliivibrio salmonicida LFI1238 conjugative transfer protein TrbI YP_002261499.1 6719 D 316275 CDS YP_002261500.1 215778360 6961433 7063..7719 1 NC_011311.1 conjugative transfer protein TraW 7719 traW 6961433 traW Aliivibrio salmonicida LFI1238 conjugative transfer protein TraW YP_002261500.1 7063 D 316275 CDS YP_002261501.1 215778361 6961430 7732..8736 1 NC_011311.1 conjugative transfer protein TraU 8736 traU 6961430 traU Aliivibrio salmonicida LFI1238 conjugative transfer protein TraU YP_002261501.1 7732 D 316275 CDS YP_002261502.1 215778362 6961429 9050..9817 1 NC_011311.1 hypothetical protein, putative conjugative transfer protein TrbC 9817 6961429 VSAL_p840_12 Aliivibrio salmonicida LFI1238 hypothetical protein, putative conjugative transfer protein TrbC YP_002261502.1 9050 D 316275 CDS YP_002261503.1 215778363 6961436 9821..11539 1 NC_011311.1 TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 11539 traN 6961436 traN Aliivibrio salmonicida LFI1238 conjugal transfer mating pair stabilization protein TraN YP_002261503.1 9821 D 316275 CDS YP_002261504.1 215778364 6961428 11549..12292 1 NC_011311.1 Similar to Escherichia coli Protein TraF UniProt:P14497 (247 aa) fasta scores: E()=1.4e-17, 30.078% id in 256 aa; conjugative transfer protein TraF 12292 traF 6961428 traF Aliivibrio salmonicida LFI1238 conjugative transfer protein TraF YP_002261504.1 11549 D 316275 CDS YP_002261505.1 215778365 6961494 12282..13049 1 NC_011311.1 membrane protein 13049 6961494 VSAL_p840_15 Aliivibrio salmonicida LFI1238 membrane protein YP_002261505.1 12282 D 316275 CDS YP_002261506.1 215778366 6961437 13119..13544 1 NC_011311.1 conjugative transfer protein TrbB 13544 trbB 6961437 trbB Aliivibrio salmonicida LFI1238 conjugative transfer protein TrbB YP_002261506.1 13119 D 316275 CDS YP_002261507.1 215778367 6961432 13541..14926 1 NC_011311.1 conjugative transfer protein TraH 14926 traH 6961432 traH Aliivibrio salmonicida LFI1238 conjugative transfer protein TraH YP_002261507.1 13541 D 316275 CDS YP_002261508.1 215778368 6961496 14923..17718 1 NC_011311.1 conjugative transfer protein TraG 17718 traG 6961496 traG Aliivibrio salmonicida LFI1238 conjugative transfer protein TraG YP_002261508.1 14923 D 316275 CDS YP_002261509.1 215778369 6961495 17817..18314 1 NC_011311.1 hypothetical protein 18314 6961495 VSAL_p840_19 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261509.1 17817 D 316275 CDS YP_002261510.1 215778370 6961438 18326..20404 1 NC_011311.1 conjugative transfer protein TraD 20404 traD 6961438 traD Aliivibrio salmonicida LFI1238 conjugative transfer protein TraD YP_002261510.1 18326 D 316275 CDS YP_002261511.1 215778371 6961492 20545..26355 1 NC_011311.1 protein TraI (DNA helicase I) 26355 traI 6961492 traI Aliivibrio salmonicida LFI1238 protein TraI (DNA helicase I) YP_002261511.1 20545 D 316275 CDS YP_002261512.1 215778372 6961425 complement(26399..26752) 1 NC_011311.1 hypothetical protein 26752 6961425 VSAL_p840_22 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261512.1 26399 R 316275 CDS YP_002261513.1 215778373 6961439 complement(27390..27827) 1 NC_011311.1 transglycosylase PilT 27827 pilT 6961439 pilT Aliivibrio salmonicida LFI1238 transglycosylase PilT YP_002261513.1 27390 R 316275 CDS YP_002261514.1 215778374 6961487 complement(27861..28256) 1 NC_011311.1 hypothetical protein 28256 6961487 VSAL_p840_24 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261514.1 27861 R 316275 CDS YP_002261515.1 215778375 6961440 complement(28293..29294) 1 NC_011311.1 antirestriction protein ArdC 29294 ardC 6961440 ardC Aliivibrio salmonicida LFI1238 antirestriction protein ArdC YP_002261515.1 28293 R 316275 CDS YP_002261516.1 215778376 6961483 complement(30133..30489) 1 NC_011311.1 hypothetical protein 30489 6961483 VSAL_p840_26 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261516.1 30133 R 316275 CDS YP_002261517.1 215778377 6961441 complement(30649..31068) 1 NC_011311.1 hypothetical protein 31068 6961441 VSAL_p840_27 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261517.1 30649 R 316275 CDS YP_002261518.1 215778378 6961442 31361..31636 1 NC_011311.1 DNA-binding protein HU-alpha 31636 hupA 6961442 hupA Aliivibrio salmonicida LFI1238 DNA-binding protein HU-alpha YP_002261518.1 31361 D 316275 CDS YP_002261519.1 215778379 6961485 complement(31792..32052) 1 NC_011311.1 hypothetical protein 32052 6961485 VSAL_p840_29 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261519.1 31792 R 316275 CDS YP_002261520.1 215778380 6961443 complement(32178..32468) 1 NC_011311.1 hypothetical protein 32468 6961443 VSAL_p840_30 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261520.1 32178 R 316275 CDS YP_002261521.1 215778381 6961444 complement(32491..32940) 1 NC_011311.1 hypothetical protein 32940 6961444 VSAL_p840_31 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261521.1 32491 R 316275 CDS YP_002261522.1 215778382 6961445 complement(32930..33313) 1 NC_011311.1 hypothetical protein 33313 6961445 VSAL_p840_32 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261522.1 32930 R 316275 CDS YP_002261523.1 215778383 6961446 complement(33384..33848) 1 NC_011311.1 DNA repair protein RadC 33848 radC 6961446 radC Aliivibrio salmonicida LFI1238 DNA repair protein RadC YP_002261523.1 33384 R 316275 CDS YP_002261524.1 215778384 6961488 complement(33897..34496) 1 NC_011311.1 hypothetical protein 34496 6961488 VSAL_p840_34 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261524.1 33897 R 316275 CDS YP_002261525.1 215778385 6961447 35695..36213 1 NC_011311.1 secreted protein Hcp-2 (haemolysin co-regulated protein) 36213 hcp 6961447 hcp Aliivibrio salmonicida LFI1238 secreted protein Hcp-2 (haemolysin co-regulated protein) YP_002261525.1 35695 D 316275 CDS YP_002261526.1 215778386 6961484 36284..38548 1 NC_011311.1 VgrG protein, VgrG-2 38548 6961484 VSAL_p840_36 Aliivibrio salmonicida LFI1238 VgrG protein, VgrG-2 YP_002261526.1 36284 D 316275 CDS YP_002261527.1 215778387 6961448 38530..39123 1 NC_011311.1 hypothetical protein 39123 6961448 VSAL_p840_37 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261527.1 38530 D 316275 CDS YP_002261528.1 215778388 6961449 39139..41583 1 NC_011311.1 putative cell wall degradation protein 41583 6961449 VSAL_p840_38 Aliivibrio salmonicida LFI1238 putative cell wall degradation protein YP_002261528.1 39139 D 316275 CDS YP_002261529.1 215778389 6961450 complement(41661..42728) 1 NC_011311.1 putative lipoprotein 42728 6961450 VSAL_p840_39 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002261529.1 41661 R 316275 CDS YP_002261530.1 215778390 6961451 43036..44232 1 NC_011311.1 Weakly similar to Escherichia coli Plasmid partition protein A UniProt:P07620 (398 aa) fasta scores: E()=4.6e-09, 27.155% id in 232 aa; putative plasmid partition protein A 44232 6961451 VSAL_p840_40 Aliivibrio salmonicida LFI1238 putative plasmid partition protein A YP_002261530.1 43036 D 316275 CDS YP_002261531.1 215778391 6961452 44232..45239 1 NC_011311.1 Weakly similar to Escherichia coli Protein sopB (Plasmid partition protein B) UniProt:P62558 (EMBL:X04619 (323 aa) fasta scores: E()=1.1e-09, 29.392% id in 296 aa; putative plasmid partition protein B 45239 6961452 VSAL_p840_41 Aliivibrio salmonicida LFI1238 putative plasmid partition protein B YP_002261531.1 44232 D 316275 CDS YP_002261532.1 215778392 6961453 complement(45731..46276) 1 NC_011311.1 putative resolvase 46276 6961453 VSAL_p840_42 Aliivibrio salmonicida LFI1238 putative resolvase YP_002261532.1 45731 R 316275 CDS YP_002261533.1 215778393 6961454 complement(46692..46922) 1 NC_011311.1 hypothetical protein 46922 6961454 VSAL_p840_43 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261533.1 46692 R 316275 CDS YP_002261534.1 215778394 6961455 complement(46932..47567) 1 NC_011311.1 putative resolvase 47567 6961455 VSAL_p840_44 Aliivibrio salmonicida LFI1238 putative resolvase YP_002261534.1 46932 R 316275 CDS YP_002261535.1 215778395 6961456 complement(47865..49046) 1 NC_011311.1 transposase 49046 6961456 VSAL_p840_45 Aliivibrio salmonicida LFI1238 transposase YP_002261535.1 47865 R 316275 CDS YP_002261536.1 215778396 6961457 49322..51541 1 NC_011311.1 putative cell wall degradation protein 51541 6961457 VSAL_p840_46 Aliivibrio salmonicida LFI1238 putative cell wall degradation protein YP_002261536.1 49322 D 316275 CDS YP_002261537.1 215778397 6961458 51541..51930 1 NC_011311.1 hypothetical protein 51930 6961458 VSAL_p840_47 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261537.1 51541 D 316275 CDS YP_002261538.1 215778398 6961459 complement(52192..52560) 1 NC_011311.1 hypothetical protein 52560 6961459 VSAL_p840_48 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261538.1 52192 R 316275 CDS YP_002261539.1 215778399 6961460 53193..54152 1 NC_011311.1 hypothetical protein 54152 6961460 VSAL_p840_49 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261539.1 53193 D 316275 CDS YP_002261540.1 215778400 6961461 54700..55974 1 NC_011311.1 hypothetical protein 55974 6961461 VSAL_p840_50 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261540.1 54700 D 316275 CDS YP_002261541.1 215778401 6961462 56054..56626 1 NC_011311.1 hypothetical protein 56626 6961462 VSAL_p840_51 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261541.1 56054 D 316275 CDS YP_002261542.1 215778402 6961463 complement(57061..57801) 1 NC_011311.1 transposase 57801 6961463 VSAL_p840_52 Aliivibrio salmonicida LFI1238 transposase YP_002261542.1 57061 R 316275 CDS YP_002261543.1 215778403 6961464 complement(58377..58655) 1 NC_011311.1 putative plasmid stabilization system protein 58655 6961464 VSAL_p840_53 Aliivibrio salmonicida LFI1238 putative plasmid stabilization system protein YP_002261543.1 58377 R 316275 CDS YP_002261544.1 215778404 6961465 complement(58652..58936) 1 NC_011311.1 hypothetical protein 58936 6961465 VSAL_p840_54 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261544.1 58652 R 316275 CDS YP_002261545.1 215778405 6961466 59510..61699 1 NC_011311.1 Similar to Streptomyces thermoviolaceus Beta-N-Acetylglucosaminidase precursor UniProt:O82840 (632 aa) fasta scores: E()=3.2e-09, 24.260% id in 507 aa; putative beta-N-acetylhexosaminidase precursor 61699 6961466 VSAL_p840_55 Aliivibrio salmonicida LFI1238 putative beta-N-acetylhexosaminidase precursor YP_002261545.1 59510 D 316275 CDS YP_002261546.1 215778406 6961467 62129..64735 1 NC_011311.1 hypothetical protein 64735 6961467 VSAL_p840_56 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261546.1 62129 D 316275 CDS YP_002261547.1 215778407 6961468 64735..67281 1 NC_011311.1 hypothetical protein 67281 6961468 VSAL_p840_57 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261547.1 64735 D 316275 CDS YP_002261548.1 215778408 6961469 complement(67397..69208) 1 NC_011311.1 hypothetical protein 69208 6961469 VSAL_p840_58 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261548.1 67397 R 316275 CDS YP_002261549.1 215778409 6961470 complement(69201..70049) 1 NC_011311.1 hypothetical protein 70049 6961470 VSAL_p840_59 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261549.1 69201 R 316275 CDS YP_002261550.1 215778410 6961471 complement(70039..71070) 1 NC_011311.1 hypothetical protein 71070 6961471 VSAL_p840_60 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261550.1 70039 R 316275 CDS YP_002261551.1 215778411 6961472 complement(71071..71682) 1 NC_011311.1 hypothetical protein 71682 6961472 VSAL_p840_61 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261551.1 71071 R 316275 CDS YP_002261552.1 215778412 6961473 complement(71703..72668) 1 NC_011311.1 putative integrase 72668 6961473 VSAL_p840_62 Aliivibrio salmonicida LFI1238 putative integrase YP_002261552.1 71703 R 316275 CDS YP_002261553.1 215778413 6961474 complement(72757..73302) 1 NC_011311.1 hypothetical protein 73302 6961474 VSAL_p840_63 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261553.1 72757 R 316275 CDS YP_002261554.1 215778414 6961475 complement(73303..74616) 1 NC_011311.1 calcineurin-like phosphoesterase 74616 6961475 VSAL_p840_64 Aliivibrio salmonicida LFI1238 calcineurin-like phosphoesterase YP_002261554.1 73303 R 316275 CDS YP_002261555.1 215778415 6961476 complement(74928..76940) 1 NC_011311.1 hypothetical protein 76940 6961476 VSAL_p840_65 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261555.1 74928 R 316275 CDS YP_002261556.1 215778416 6961477 complement(77075..77350) 1 NC_011311.1 DNA-binding protein HU-alpha 77350 hupA 6961477 hupA Aliivibrio salmonicida LFI1238 DNA-binding protein HU-alpha YP_002261556.1 77075 R 316275 CDS YP_002261557.1 215778417 6961486 complement(77364..77960) 1 NC_011311.1 hypothetical protein 77960 6961486 VSAL_p840_67 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261557.1 77364 R 316275 CDS YP_002261558.1 215778418 6961478 complement(78757..79617) 1 NC_011311.1 hypothetical protein 79617 6961478 VSAL_p840_68 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261558.1 78757 R 316275 CDS YP_002261559.1 215778419 6961479 80289..80525 1 NC_011311.1 hypothetical protein 80525 6961479 VSAL_p840_69 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261559.1 80289 D 316275 CDS YP_002261560.1 215778420 6961480 complement(80554..81303) 1 NC_011311.1 hypothetical protein 81303 6961480 VSAL_p840_70 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261560.1 80554 R 316275 CDS YP_002261561.1 215778421 6961481 complement(81300..82244) 1 NC_011311.1 membrane protein 82244 6961481 VSAL_p840_71 Aliivibrio salmonicida LFI1238 membrane protein YP_002261561.1 81300 R 316275 CDS YP_002261562.1 215778422 6961482 complement(82244..83374) 1 NC_011311.1 membrane protein 83374 6961482 VSAL_p840_72 Aliivibrio salmonicida LFI1238 membrane protein YP_002261562.1 82244 R 316275 CDS YP_002261563.1 209693635 6989445 complement(312..746) 1 NC_011312.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 746 mioC 6989445 mioC Aliivibrio salmonicida LFI1238 flavodoxin YP_002261563.1 312 R 316275 CDS YP_002261564.1 209693636 6988808 complement(811..2178) 1 NC_011312.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2178 trmE 6988808 trmE Aliivibrio salmonicida LFI1238 tRNA modification GTPase TrmE YP_002261564.1 811 R 316275 CDS YP_002261565.1 209693637 6989323 complement(2277..3902) 1 NC_011312.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; protein translocase component YidC 3902 oxaA 6989323 oxaA Aliivibrio salmonicida LFI1238 protein translocase component YidC YP_002261565.1 2277 R 316275 CDS YP_002261566.1 209693638 6988939 complement(4129..4482) 1 NC_011312.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4482 rnpA 6988939 rnpA Aliivibrio salmonicida LFI1238 ribonuclease P YP_002261566.1 4129 R 316275 CDS YP_002261567.1 209693639 6989139 complement(4499..4633) 1 NC_011312.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4633 rpmH 6989139 rpmH Aliivibrio salmonicida LFI1238 50S ribosomal protein L34 YP_002261567.1 4499 R 316275 CDS YP_002261568.1 209693640 6989177 complement(4820..5557) 1 NC_011312.1 amino-acid ABC transporter ATP-binding protein 5557 6989177 VSAL_I0006 Aliivibrio salmonicida LFI1238 amino-acid ABC transporter ATP-binding protein YP_002261568.1 4820 R 316275 CDS YP_002261569.1 209693641 6986249 complement(5554..6225) 1 NC_011312.1 amino-acid ABC transporter permease protein 6225 6986249 VSAL_I0007 Aliivibrio salmonicida LFI1238 amino-acid ABC transporter permease protein YP_002261569.1 5554 R 316275 CDS YP_002261570.1 209693642 6986250 complement(6380..7132) 1 NC_011312.1 Similar to Escherichia coli Cystine-binding periplasmic protein precursor FliY UniProt:P0AEM9 (266 aa) fasta scores: E()=6.8e-24, 40.969% id in 227 aa; amino acid ABC transportersubstrate-binding protein 7132 6986250 VSAL_I0008 Aliivibrio salmonicida LFI1238 amino acid ABC transportersubstrate-binding protein YP_002261570.1 6380 R 316275 CDS YP_002261571.1 209693643 6986251 7427..8833 1 NC_011312.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 8833 dnaA 6986251 dnaA Aliivibrio salmonicida LFI1238 chromosomal replication initiation protein YP_002261571.1 7427 D 316275 CDS YP_002261572.1 209693644 6988411 8866..9975 1 NC_011312.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 9975 dnaN 6988411 dnaN Aliivibrio salmonicida LFI1238 DNA polymerase III subunit beta YP_002261572.1 8866 D 316275 CDS YP_002261573.1 209693645 6988419 9989..11068 1 NC_011312.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 11068 recF 6988419 recF Aliivibrio salmonicida LFI1238 recombination protein F YP_002261573.1 9989 D 316275 CDS YP_002261574.1 209693646 6989079 11086..13503 1 NC_011312.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 13503 gyrB 6989079 gyrB Aliivibrio salmonicida LFI1238 DNA gyrase subunit B YP_002261574.1 11086 D 316275 CDS YP_002261575.1 209693647 6986252 complement(14049..15239) 1 NC_011312.1 transposase 15239 6986252 VSAL_I0014 Aliivibrio salmonicida LFI1238 transposase YP_002261575.1 14049 R 316275 CDS YP_002261576.1 209693648 6986253 complement(16295..16642) 1 NC_011312.1 transposase 16642 6986253 VSAL_I0015 Aliivibrio salmonicida LFI1238 transposase YP_002261576.1 16295 R 316275 CDS YP_002261577.1 209693649 6986254 complement(16639..16953) 1 NC_011312.1 transposase 16953 6986254 VSAL_I0016 Aliivibrio salmonicida LFI1238 transposase YP_002261577.1 16639 R 316275 CDS YP_002261578.1 209693650 6986255 complement(17172..18809) 1 NC_011312.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 18809 groEL 6986255 groEL Aliivibrio salmonicida LFI1238 chaperonin GroEL YP_002261578.1 17172 R 316275 CDS YP_002261579.1 209693651 6988625 complement(18902..19189) 1 NC_011312.1 molecular chaperone GroES 19189 groS1 6988625 groS1 Aliivibrio salmonicida LFI1238 molecular chaperone GroES YP_002261579.1 18902 R 316275 CDS YP_002261580.1 209693652 6988626 complement(19716..20909) 1 NC_011312.1 transposase 20909 6988626 VSAL_I0019 Aliivibrio salmonicida LFI1238 transposase YP_002261580.1 19716 R 316275 CDS YP_002261581.1 209693653 6986256 21269..21523 1 NC_011312.1 hypothetical protein 21523 6986256 VSAL_I0020 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261581.1 21269 D 316275 CDS YP_002261582.1 209693654 6986257 22530..23489 1 NC_011312.1 antirestriction protein 23489 6986257 VSAL_I0021 Aliivibrio salmonicida LFI1238 antirestriction protein YP_002261582.1 22530 D 316275 CDS YP_002261583.1 209693655 6986258 complement(23916..25109) 1 NC_011312.1 transposase 25109 6986258 VSAL_I0022 Aliivibrio salmonicida LFI1238 transposase YP_002261583.1 23916 R 316275 CDS YP_002261584.1 209693656 6986259 25189..26034 1 NC_011312.1 metallo-beta-lactamase superfamily protein 26034 6986259 VSAL_I0023 Aliivibrio salmonicida LFI1238 metallo-beta-lactamase superfamily protein YP_002261584.1 25189 D 316275 CDS YP_002261585.1 209693657 6986260 26437..26988 1 NC_011312.1 adenylate cyclase 26988 cyaB 6986260 cyaB Aliivibrio salmonicida LFI1238 adenylate cyclase YP_002261585.1 26437 D 316275 CDS YP_002261586.1 209693658 6988365 27382..27747 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 27747 6988365 VSAL_I0025 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261586.1 27382 D 316275 CDS YP_002261587.1 209693659 6986261 27776..28180 1 NC_011312.1 hypothetical protein 28180 6986261 VSAL_I0026 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261587.1 27776 D 316275 CDS YP_002261588.1 209693660 6986262 28436..29215 1 NC_011312.1 Similar to Escherichia coli o157:h- Plasmid pSFO157 Wb0013. UniProt:Q8VU43 (262 aa) fasta scores: E()=2.3e-08,24.254% id in 268 aa; hypothetical protein 29215 6986262 VSAL_I0027 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261588.1 28436 D 316275 CDS YP_002261589.1 209693661 6986263 29602..30555 1 NC_011312.1 hypothetical protein 30555 6986263 VSAL_I0028 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261589.1 29602 D 316275 CDS YP_002261590.1 209693662 6986264 complement(30807..31769) 1 NC_011312.1 transposase 31769 6986264 VSAL_I0029 Aliivibrio salmonicida LFI1238 transposase YP_002261590.1 30807 R 316275 CDS YP_002261591.1 209693663 6986265 32166..32456 1 NC_011312.1 hypothetical protein 32456 6986265 VSAL_I0030 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261591.1 32166 D 316275 CDS YP_002261592.1 209693664 6986266 33193..35412 1 NC_011312.1 cell wall degradation enzyme 35412 6986266 VSAL_I0031 Aliivibrio salmonicida LFI1238 cell wall degradation enzyme YP_002261592.1 33193 D 316275 CDS YP_002261593.1 209693665 6986267 35412..35801 1 NC_011312.1 hypothetical protein 35801 6986267 VSAL_I0032 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261593.1 35412 D 316275 CDS YP_002261594.1 209693666 6986268 complement(35944..36303) 1 NC_011312.1 hypothetical protein 36303 6986268 VSAL_I0033 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261594.1 35944 R 316275 CDS YP_002261595.1 209693667 6986269 complement(36382..37035) 1 NC_011312.1 hypothetical protein 37035 6986269 VSAL_I0034 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261595.1 36382 R 316275 CDS YP_002261596.1 209693668 6986270 complement(37276..38466) 1 NC_011312.1 transposase 38466 6986270 VSAL_I0035 Aliivibrio salmonicida LFI1238 transposase YP_002261596.1 37276 R 316275 CDS YP_002261597.1 209693669 6986273 40119..41000 1 NC_011312.1 transposase 41000 6986273 VSAL_I0038 Aliivibrio salmonicida LFI1238 transposase YP_002261597.1 40119 D 316275 CDS YP_002261598.1 209693670 6986274 41289..42239 1 NC_011312.1 transposase 42239 6986274 VSAL_I0039 Aliivibrio salmonicida LFI1238 transposase YP_002261598.1 41289 D 316275 CDS YP_002261599.1 209693671 6986275 42740..43933 1 NC_011312.1 transposase 43933 6986275 VSAL_I0040 Aliivibrio salmonicida LFI1238 transposase YP_002261599.1 42740 D 316275 CDS YP_002261600.1 209693672 6988708 44867..46393 1 NC_011312.1 competence protein 46393 6988708 VSAL_I0042 Aliivibrio salmonicida LFI1238 competence protein YP_002261600.1 44867 D 316275 CDS YP_002261601.1 209693673 6986277 46481..47350 1 NC_011312.1 Similar to Escherichia coli acyltransferase YihG UniProt:P32129 (310 aa) fasta scores: E()=5.3e-48, 42.612% id in 291 aa; acyltransferase 47350 6986277 VSAL_I0043 Aliivibrio salmonicida LFI1238 acyltransferase YP_002261601.1 46481 D 316275 CDS YP_002261602.1 209693674 6986278 complement(47417..48040) 1 NC_011312.1 thiol/disulfide interchange protein DsbA precursor 48040 dsbA 6986278 dsbA Aliivibrio salmonicida LFI1238 thiol/disulfide interchange protein DsbA precursor YP_002261602.1 47417 R 316275 CDS YP_002261603.1 209693675 6988423 complement(48066..49049) 1 NC_011312.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 49049 rdoA 6988423 rdoA Aliivibrio salmonicida LFI1238 serine/threonine protein kinase YP_002261603.1 48066 R 316275 CDS YP_002261604.1 209693676 6989074 complement(49108..50526) 1 NC_011312.1 Expression may be regulated by Fur; ferredoxin 50526 6989074 VSAL_I0046 Aliivibrio salmonicida LFI1238 ferredoxin YP_002261604.1 49108 R 316275 CDS YP_002261605.1 209693677 6986279 complement(50752..51015) 1 NC_011312.1 hypothetical protein 51015 6986279 VSAL_I0047 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261605.1 50752 R 316275 CDS YP_002261606.1 209693678 6986280 51533..52318 1 NC_011312.1 sporulation-control protein 52318 6986280 VSAL_I0048 Aliivibrio salmonicida LFI1238 sporulation-control protein YP_002261606.1 51533 D 316275 CDS YP_002261607.1 209693679 6986281 52420..53067 1 NC_011312.1 hemolysin III 53067 hlyIII 6986281 hlyIII Aliivibrio salmonicida LFI1238 hemolysin III YP_002261607.1 52420 D 316275 CDS YP_002261608.1 209693680 6988672 complement(53364..54557) 1 NC_011312.1 transposase 54557 6988672 VSAL_I0050 Aliivibrio salmonicida LFI1238 transposase YP_002261608.1 53364 R 316275 CDS YP_002261609.1 209693681 6986282 complement(54711..54920) 1 NC_011312.1 cold shock protein 54920 cspV 6986282 cspV Aliivibrio salmonicida LFI1238 cold shock protein YP_002261609.1 54711 R 316275 CDS YP_002261610.1 209693682 6988356 complement(55198..56730) 1 NC_011312.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 56730 ilvA 6988356 ilvA Aliivibrio salmonicida LFI1238 threonine dehydratase YP_002261610.1 55198 R 316275 CDS YP_002261611.1 209693683 6988705 complement(56735..58207) 1 NC_011312.1 The CDS appears to have a deletion of 130 amino acid residues after codon 297 in comparison to orthologues; dihydroxy-acid dehydratase 58207 ilvD 6988705 ilvD Aliivibrio salmonicida LFI1238 dihydroxy-acid dehydratase YP_002261611.1 56735 R 316275 CDS YP_002261612.1 209693684 6988707 complement(58234..58482) 1 NC_011312.1 acetolactate synthase 2 regulatory subunit 58482 ilvM 6988707 ilvM Aliivibrio salmonicida LFI1238 acetolactate synthase 2 regulatory subunit YP_002261612.1 58234 R 316275 CDS YP_002261613.1 209693685 6988709 59847..61040 1 NC_011312.1 transposase 61040 6988709 VSAL_I0056 Aliivibrio salmonicida LFI1238 transposase YP_002261613.1 59847 D 316275 CDS YP_002261614.1 209693686 6986283 61632..62159 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 62159 6986283 VSAL_I0057 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261614.1 61632 D 316275 CDS YP_002261615.1 209693687 6986284 62442..63239 1 NC_011312.1 Similar to Bacillus subtilis Sporulation initiation inhibitor protein Soj UniProt:P37522 (253 aa) fasta scores: E()=1.6e-13, 32.389% id in 247 aa; ParA chromosome partitioning protein 63239 6986284 VSAL_I0058 Aliivibrio salmonicida LFI1238 ParA chromosome partitioning protein YP_002261615.1 62442 D 316275 CDS YP_002261616.1 209693688 6986285 63236..64210 1 NC_011312.1 chromosome partitioning protein ParB 64210 6986285 VSAL_I0059 Aliivibrio salmonicida LFI1238 chromosome partitioning protein ParB YP_002261616.1 63236 D 316275 CDS YP_002261617.1 209693689 6986286 64200..64604 1 NC_011312.1 hypothetical protein 64604 6986286 VSAL_I0060 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261617.1 64200 D 316275 CDS YP_002261618.1 209693690 6986287 64789..65160 1 NC_011312.1 hypothetical protein 65160 6986287 VSAL_I0061 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261618.1 64789 D 316275 CDS YP_002261619.1 209693691 6986288 complement(65851..66444) 1 NC_011312.1 hypothetical protein 66444 6986288 VSAL_I0062 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261619.1 65851 R 316275 CDS YP_002261620.1 209693692 6986291 69062..69418 1 NC_011312.1 transposase 69418 6986291 VSAL_I0065 Aliivibrio salmonicida LFI1238 transposase YP_002261620.1 69062 D 316275 CDS YP_002261621.1 209693693 6986292 69494..69790 1 NC_011312.1 transposase 69790 6986292 VSAL_I0066 Aliivibrio salmonicida LFI1238 transposase YP_002261621.1 69494 D 316275 CDS YP_002261622.1 209693694 6986295 complement(72716..73063) 1 NC_011312.1 transposase 73063 6986295 VSAL_I0069 Aliivibrio salmonicida LFI1238 transposase YP_002261622.1 72716 R 316275 CDS YP_002261623.1 209693695 6986296 complement(73060..73374) 1 NC_011312.1 transposase 73374 6986296 VSAL_I0070 Aliivibrio salmonicida LFI1238 transposase YP_002261623.1 73060 R 316275 CDS YP_002261624.1 209693696 6989318 complement(74902..76278) 1 NC_011312.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 76278 trkA 6989318 trkA Aliivibrio salmonicida LFI1238 potassium transporter peripheral membrane protein YP_002261624.1 74902 R 316275 CDS YP_002261625.1 209693697 6989317 complement(76303..77637) 1 NC_011312.1 Possible alternative translational start site after codon 18; ribosomal RNA small subunit methyltransferase B 77637 rsmB 6989317 rsmB Aliivibrio salmonicida LFI1238 ribosomal RNA small subunit methyltransferase B YP_002261625.1 76303 R 316275 CDS YP_002261626.1 209693698 6989211 complement(77686..78651) 1 NC_011312.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 78651 fmt 6989211 fmt Aliivibrio salmonicida LFI1238 methionyl-tRNA formyltransferase YP_002261626.1 77686 R 316275 CDS YP_002261627.1 209693699 6988550 complement(78654..79163) 1 NC_011312.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 79163 def 6988550 def Aliivibrio salmonicida LFI1238 peptide deformylase YP_002261627.1 78654 R 316275 CDS YP_002261628.1 209693700 6988400 79281..80342 1 NC_011312.1 cell wall degradation enzyme 80342 6988400 VSAL_I0076 Aliivibrio salmonicida LFI1238 cell wall degradation enzyme YP_002261628.1 79281 D 316275 CDS YP_002261629.1 209693701 6986298 80351..81460 1 NC_011312.1 Smf protein 81460 smf 6986298 smf Aliivibrio salmonicida LFI1238 Smf protein YP_002261629.1 80351 D 316275 CDS YP_002261630.1 209693702 6989249 81463..81936 1 NC_011312.1 hypothetical protein 81936 6989249 VSAL_I0078 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261630.1 81463 D 316275 CDS YP_002261631.1 209693703 6986299 81946..82515 1 NC_011312.1 Similar to Bacillus subtilis DNA topoisomerase 1 TopA UniProt:P39814 (691 aa) fasta scores: E()=2e-10,32.258% id in 124 aa; DNA topoisomerase 82515 yrdD 6986299 yrdD Aliivibrio salmonicida LFI1238 DNA topoisomerase YP_002261631.1 81946 D 316275 CDS YP_002261632.1 209693704 6989439 complement(82555..83673) 1 NC_011312.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 83673 purK 6989439 purK Aliivibrio salmonicida LFI1238 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_002261632.1 82555 R 316275 CDS YP_002261633.1 209693705 6989040 complement(83673..84209) 1 NC_011312.1 phosphoribosylaminoimidazole carboxylase catalytic subunit 84209 purE 6989040 purE Aliivibrio salmonicida LFI1238 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_002261633.1 83673 R 316275 CDS YP_002261634.1 209693706 6989037 84360..84917 1 NC_011312.1 hypothetical protein 84917 6989037 VSAL_I0082 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261634.1 84360 D 316275 CDS YP_002261635.1 209693707 6986300 84984..85805 1 NC_011312.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 85805 aroE 6986300 aroE Aliivibrio salmonicida LFI1238 shikimate 5-dehydrogenase YP_002261635.1 84984 D 316275 CDS YP_002261636.1 209693708 6988261 85879..86064 1 NC_011312.1 Similar to Vibrio fischeri Hypothetical protein UniProt:Q5E1R7 (87 aa) fasta scores: E()=7e-11, 65.000% id in 60 aa; hypothetical protein 86064 6988261 VSAL_I0084 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261636.1 85879 D 316275 CDS YP_002261637.1 209693709 6986301 complement(86057..86602) 1 NC_011312.1 transferase 86602 6986301 VSAL_I0085 Aliivibrio salmonicida LFI1238 transferase YP_002261637.1 86057 R 316275 CDS YP_002261638.1 209693710 6988086 complement(114812..115696) 1 NC_011312.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 115696 ilvY 6988086 ilvY Aliivibrio salmonicida LFI1238 DNA-binding transcriptional regulator IlvY YP_002261638.1 114812 R 316275 CDS YP_002261639.1 209693711 6988713 115825..117309 1 NC_011312.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 117309 ilvC 6988713 ilvC Aliivibrio salmonicida LFI1238 ketol-acid reductoisomerase YP_002261639.1 115825 D 316275 CDS YP_002261640.1 209693712 6988706 complement(117397..117648) 1 NC_011312.1 hypothetical protein 117648 6988706 VSAL_I0088 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261640.1 117397 R 316275 CDS YP_002261641.1 209693713 6986303 complement(117758..120826) 1 NC_011312.1 Similar to Escherichia coli Acriflavine resistance protein F AcrF UniProt:P24181 (1034 aa) blastp scores: E()=0e-130; integral membrane component of multidrug efflux system 120826 6986303 VSAL_I0089 Aliivibrio salmonicida LFI1238 integral membrane component of multidrug efflux system YP_002261641.1 117758 R 316275 CDS YP_002261642.1 209693714 6986304 complement(120838..121944) 1 NC_011312.1 Similar to Pseudomonas aeruginosa Multidrug transporter membrane fusion protein MexA (PDB 1VF7),evalue=3e-21, identity=(80, 326); multidrug transporter HlyD family 121944 6986304 VSAL_I0090 Aliivibrio salmonicida LFI1238 multidrug transporter HlyD family YP_002261642.1 120838 R 316275 CDS YP_002261643.1 209693715 6986305 complement(121963..122562) 1 NC_011312.1 TetR family transcriptional regulator 122562 6986305 VSAL_I0091 Aliivibrio salmonicida LFI1238 TetR family transcriptional regulator YP_002261643.1 121963 R 316275 CDS YP_002261644.1 209693716 6986306 122717..124732 1 NC_011312.1 ATP-dependent DNA helicase rep 124732 rep 6986306 rep Aliivibrio salmonicida LFI1238 ATP-dependent DNA helicase rep YP_002261644.1 122717 D 316275 CDS YP_002261645.1 209693717 6989087 complement(124833..125240) 1 NC_011312.1 cytochrome c 125240 6989087 VSAL_I0093 Aliivibrio salmonicida LFI1238 cytochrome c YP_002261645.1 124833 R 316275 CDS YP_002261646.1 209693718 6986308 128498..130051 1 NC_011312.1 transport protein, extracellular solute-binding protein 130051 6986308 VSAL_I0095 Aliivibrio salmonicida LFI1238 transport protein, extracellular solute-binding protein YP_002261646.1 128498 D 316275 CDS YP_002261647.1 209693719 6986309 130188..131165 1 NC_011312.1 Similar to Bacillus subtilis Oligopeptide transport system permease protein AppB UniProt:P42062 (317 aa) fasta scores: E()=1e-32, 34.161% id in 322 aa; binding-protein-dependent transport system,inner membrane component 131165 6986309 VSAL_I0096 Aliivibrio salmonicida LFI1238 binding-protein-dependent transport system,inner membrane component YP_002261647.1 130188 D 316275 CDS YP_002261648.1 209693720 6986310 131168..132109 1 NC_011312.1 binding-protein-dependent transport system,inner membrane component 132109 6986310 VSAL_I0097 Aliivibrio salmonicida LFI1238 binding-protein-dependent transport system,inner membrane component YP_002261648.1 131168 D 316275 CDS YP_002261649.1 209693721 6986311 132347..133927 1 NC_011312.1 Similar to Bacillus subtilis Glycine betaine transporter OpuD UniProt:P54417 (512 aa) fasta scores: E()=4.2e-65, 41.968% id in 498 aa; transporter BCCT family 133927 6986311 VSAL_I0098 Aliivibrio salmonicida LFI1238 transporter BCCT family YP_002261649.1 132347 D 316275 CDS YP_002261650.1 209693722 6986312 complement(134012..134728) 1 NC_011312.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 134728 6986312 VSAL_I0099 Aliivibrio salmonicida LFI1238 DNA polymerase III subunit epsilon YP_002261650.1 134012 R 316275 CDS YP_002261651.1 209693723 6986313 complement(134738..136618) 1 NC_011312.1 cyclic nucleotide binding protein 136618 6986313 VSAL_I0100 Aliivibrio salmonicida LFI1238 cyclic nucleotide binding protein YP_002261651.1 134738 R 316275 CDS YP_002261652.1 209693724 6986314 136794..137672 1 NC_011312.1 hypothetical protein 137672 6986314 VSAL_I0101 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261652.1 136794 D 316275 CDS YP_002261653.1 209693725 6986315 137656..137919 1 NC_011312.1 hypothetical protein 137919 6986315 VSAL_I0102 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261653.1 137656 D 316275 CDS YP_002261654.1 209693726 6986316 complement(137970..139940) 1 NC_011312.1 HTH-type transcriptional regulator 139940 6986316 VSAL_I0103 Aliivibrio salmonicida LFI1238 HTH-type transcriptional regulator YP_002261654.1 137970 R 316275 CDS YP_002261655.1 209693727 6986317 complement(140087..140827) 1 NC_011312.1 hypothetical protein 140827 6986317 VSAL_I0104 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261655.1 140087 R 316275 CDS YP_002261656.1 209693728 6986318 complement(140840..141886) 1 NC_011312.1 hypothetical protein 141886 6986318 VSAL_I0105 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261656.1 140840 R 316275 CDS YP_002261657.1 209693729 6986319 complement(141927..143063) 1 NC_011312.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 143063 6986319 VSAL_I0106 Aliivibrio salmonicida LFI1238 dihydroorotase YP_002261657.1 141927 R 316275 CDS YP_002261658.1 209693730 6986320 complement(143122..143772) 1 NC_011312.1 membrane protein 143772 6986320 VSAL_I0107 Aliivibrio salmonicida LFI1238 membrane protein YP_002261658.1 143122 R 316275 CDS YP_002261659.1 209693731 6986321 complement(143787..144566) 1 NC_011312.1 membrane protein 144566 6986321 VSAL_I0108 Aliivibrio salmonicida LFI1238 membrane protein YP_002261659.1 143787 R 316275 CDS YP_002261660.1 209693732 6986322 complement(144627..144923) 1 NC_011312.1 hypothetical protein 144923 6986322 VSAL_I0109 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261660.1 144627 R 316275 CDS YP_002261661.1 209693733 6986323 complement(144926..145288) 1 NC_011312.1 hypothetical protein 145288 6986323 VSAL_I0110 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261661.1 144926 R 316275 CDS YP_002261662.1 209693734 6986324 complement(145290..145637) 1 NC_011312.1 hypothetical protein 145637 6986324 VSAL_I0111 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261662.1 145290 R 316275 CDS YP_002261663.1 209693735 6986325 145902..146783 1 NC_011312.1 transposase 146783 6986325 VSAL_I0112 Aliivibrio salmonicida LFI1238 transposase YP_002261663.1 145902 D 316275 CDS YP_002261664.1 209693736 6986326 146904..147218 1 NC_011312.1 transposase 147218 6986326 VSAL_I0113 Aliivibrio salmonicida LFI1238 transposase YP_002261664.1 146904 D 316275 CDS YP_002261665.1 209693737 6986327 147215..147562 1 NC_011312.1 transposase 147562 6986327 VSAL_I0114 Aliivibrio salmonicida LFI1238 transposase YP_002261665.1 147215 D 316275 CDS YP_002261666.1 209693738 6986328 147634..149121 1 NC_011312.1 transposase 149121 6986328 VSAL_I0115 Aliivibrio salmonicida LFI1238 transposase YP_002261666.1 147634 D 316275 CDS YP_002261667.1 209693739 6986329 complement(149312..151027) 1 NC_011312.1 hypothetical protein 151027 6986329 VSAL_I0116 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261667.1 149312 R 316275 CDS YP_002261668.1 209693740 6986330 complement(151287..151856) 1 NC_011312.1 RNA polymerase sigma factor 151856 6986330 VSAL_I0117 Aliivibrio salmonicida LFI1238 RNA polymerase sigma factor YP_002261668.1 151287 R 316275 CDS YP_002261669.1 209693741 6986331 complement(151960..153300) 1 NC_011312.1 protein kinase 153300 6986331 VSAL_I0118 Aliivibrio salmonicida LFI1238 protein kinase YP_002261669.1 151960 R 316275 CDS YP_002261670.1 209693742 6986332 153609..154199 1 NC_011312.1 hypothetical protein 154199 6986332 VSAL_I0119 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261670.1 153609 D 316275 CDS YP_002261671.1 209693743 6986333 complement(154286..155641) 1 NC_011312.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 155641 gor 6986333 gor Aliivibrio salmonicida LFI1238 glutathione reductase YP_002261671.1 154286 R 316275 CDS YP_002261672.1 209693744 6988616 complement(155854..156693) 1 NC_011312.1 hypothetical protein 156693 6988616 VSAL_I0121 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261672.1 155854 R 316275 CDS YP_002261673.1 209693745 6986334 156846..158888 1 NC_011312.1 oligopeptidase A 158888 prlC 6986334 prlC Aliivibrio salmonicida LFI1238 oligopeptidase A YP_002261673.1 156846 D 316275 CDS YP_002261674.1 209693746 6989009 complement(158962..160401) 1 NC_011312.1 peptidase 160401 6989009 VSAL_I0123 Aliivibrio salmonicida LFI1238 peptidase YP_002261674.1 158962 R 316275 CDS YP_002261675.1 209693747 6986335 complement(160523..160837) 1 NC_011312.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 160837 cyaY 6986335 cyaY Aliivibrio salmonicida LFI1238 frataxin-like protein YP_002261675.1 160523 R 316275 CDS YP_002261676.1 209693748 6988366 161114..162367 1 NC_011312.1 diaminopimelate decarboxylase 162367 lysA 6988366 lysA Aliivibrio salmonicida LFI1238 diaminopimelate decarboxylase YP_002261676.1 161114 D 316275 CDS YP_002261677.1 209693749 6988769 162449..163279 1 NC_011312.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 163279 dapF 6988769 dapF Aliivibrio salmonicida LFI1238 diaminopimelate epimerase YP_002261677.1 162449 D 316275 CDS YP_002261678.1 209693750 6988392 163276..163977 1 NC_011312.1 hypothetical protein 163977 6988392 VSAL_I0127 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261678.1 163276 D 316275 CDS YP_002261679.1 209693751 6986336 163970..164881 1 NC_011312.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 164881 xerC 6986336 xerC Aliivibrio salmonicida LFI1238 site-specific tyrosine recombinase XerC YP_002261679.1 163970 D 316275 CDS YP_002261680.1 209693752 6989418 165050..165364 1 NC_011312.1 transposase 165364 6989418 VSAL_I0129 Aliivibrio salmonicida LFI1238 transposase YP_002261680.1 165050 D 316275 CDS YP_002261681.1 209693753 6986338 complement(165725..166915) 1 NC_011312.1 transposase 166915 6986338 VSAL_I0131 Aliivibrio salmonicida LFI1238 transposase YP_002261681.1 165725 R 316275 CDS YP_002261682.1 209693754 6986339 167270..167860 1 NC_011312.1 lipoprotein 167860 6986339 VSAL_I0132 Aliivibrio salmonicida LFI1238 lipoprotein YP_002261682.1 167270 D 316275 CDS YP_002261683.1 209693755 6986340 167877..169328 1 NC_011312.1 hypothetical protein 169328 6986340 VSAL_I0133 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261683.1 167877 D 316275 CDS YP_002261684.1 209693756 6986341 169900..171447 1 NC_011312.1 Similar to Rhizobium meliloti L-2,4-diaminobutyrate decarboxylase, UniProt:Q9Z3R1 (495 aa) fasta scores: E()=3e-36, 36.034% id in 469 aa. Expression may be regulated by Fur; L-2,4-diaminobutyrate decarboxylase 171447 6986341 VSAL_I0134 Aliivibrio salmonicida LFI1238 L-2,4-diaminobutyrate decarboxylase YP_002261684.1 169900 D 316275 CDS YP_002261685.1 209693757 6986342 171464..172792 1 NC_011312.1 Similar to Escherichia coli L-lysine 6-monooxygenase IucD UniProt:P11295 (425 aa) fasta scores: E()=7.3e-46, 33.021% id in 427 aa; siderophore biosynthetis protein 172792 iucD 6986342 iucD Aliivibrio salmonicida LFI1238 siderophore biosynthetis protein YP_002261685.1 171464 D 316275 CDS YP_002261686.1 209693758 6988732 172803..175262 1 NC_011312.1 Similar to Vibrio hollisae Aerobactin synthetase IucC UniProt:Q4H460 (586 aa) fasta scores: E()=3.9e-49,30.100% id in 598 aa. Possible alternative translational start site after codon 56; siderophore biosynthesis protein 175262 iucC 6988732 iucC Aliivibrio salmonicida LFI1238 siderophore biosynthesis protein YP_002261686.1 172803 D 316275 CDS YP_002261687.1 209693759 6988731 175286..177451 1 NC_011312.1 Similar to Pseudomonas aeruginosa Ferripyoverdine receptor precursor FpvA UniProt:P48632 (815 aa) fasta scores: E()=4.5e-83, 36.483% id in 688 aa; TonB-dependent iron-siderophore receptor precursor 177451 6988731 VSAL_I0137 Aliivibrio salmonicida LFI1238 TonB-dependent iron-siderophore receptor precursor YP_002261687.1 175286 D 316275 CDS YP_002261688.1 209693760 6986343 177570..178520 1 NC_011312.1 Similar to Escherichia coli Ferrienterobactin-binding periplasmic protein precursor FepB UniProt:P0AEL6 (318 aa) fasta scores: E()=4.8e-05,21.908% id in 283 aa; iron-siderophore ABC transporter periplasmic binding protein 178520 6986343 VSAL_I0138 Aliivibrio salmonicida LFI1238 iron-siderophore ABC transporter periplasmic binding protein YP_002261688.1 177570 D 316275 CDS YP_002261689.1 209693761 6986344 178517..179617 1 NC_011312.1 iron-siderophore ABC transporter membrane permease component 179617 fepD 6986344 fepD Aliivibrio salmonicida LFI1238 iron-siderophore ABC transporter membrane permease component YP_002261689.1 178517 D 316275 CDS YP_002261690.1 209693762 6988493 179607..180632 1 NC_011312.1 Similar to Vibrio cholerae Cytoplasmic membrane permease (viuG); id 34.328%; ungapped id 35.276%; E()=5.4e-27; 335 aa overlap; iron-siderophore ABC transporter membrane permease component 180632 fecD 6988493 fecD Aliivibrio salmonicida LFI1238 iron-siderophore ABC transporter membrane permease component YP_002261690.1 179607 D 316275 CDS YP_002261691.1 209693763 6988490 180647..181453 1 NC_011312.1 Similar to Vibrio cholerae ATPase (viuC); length=279; id 49.802%; ungapped id 50.000%; E()=7.2e-40; 253 aa overlap; iron-siderophore ABC transporter ATP-binding protein 181453 fepC 6988490 fepC Aliivibrio salmonicida LFI1238 iron-siderophore ABC transporter ATP-binding protein YP_002261691.1 180647 D 316275 CDS YP_002261692.1 209693764 6988492 181578..181892 1 NC_011312.1 transposase 181892 6988492 VSAL_I0142 Aliivibrio salmonicida LFI1238 transposase YP_002261692.1 181578 D 316275 CDS YP_002261693.1 209693765 6986345 181889..182236 1 NC_011312.1 transposase 182236 6986345 VSAL_I0143 Aliivibrio salmonicida LFI1238 transposase YP_002261693.1 181889 D 316275 CDS YP_002261694.1 209693766 6986346 182308..183795 1 NC_011312.1 transposase 183795 6986346 VSAL_I0144 Aliivibrio salmonicida LFI1238 transposase YP_002261694.1 182308 D 316275 CDS YP_002261695.1 209693767 6988619 complement(185316..186620) 1 NC_011312.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 186620 rhlB 6988619 rhlB Aliivibrio salmonicida LFI1238 ATP-dependent RNA helicase RhlB YP_002261695.1 185316 R 316275 CDS YP_002261696.1 209693768 6989092 186733..187059 1 NC_011312.1 thioredoxin 1 187059 trxA 6989092 trxA Aliivibrio salmonicida LFI1238 thioredoxin 1 YP_002261696.1 186733 D 316275 CDS YP_002261697.1 209693769 6989339 187298..188557 1 NC_011312.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 188557 rho 6989339 rho Aliivibrio salmonicida LFI1238 transcription termination factor Rho YP_002261697.1 187298 D 316275 CDS YP_002261698.1 209693770 6989094 188701..189723 1 NC_011312.1 hypothetical protein 189723 6989094 VSAL_I0149 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261698.1 188701 D 316275 CDS YP_002261699.1 209693771 6986348 189820..191661 1 NC_011312.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 191661 ubiD 6986348 ubiD Aliivibrio salmonicida LFI1238 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002261699.1 189820 D 316275 CDS YP_002261700.1 209693772 6989350 191658..191921 1 NC_011312.1 Similar to Equisetum telmateia (Giant horsetail) Ferredoxin-1 UniProt:P00234 (95 aa) fasta scores: E()=2.5e-08, 42.857% id in 84 aa; ferredoxin 191921 6989350 VSAL_I0151 Aliivibrio salmonicida LFI1238 ferredoxin YP_002261700.1 191658 D 316275 CDS YP_002261701.1 209693773 6986349 192020..192730 1 NC_011312.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 192730 fre 6986349 fre Aliivibrio salmonicida LFI1238 FMN reductase YP_002261701.1 192020 D 316275 CDS YP_002261702.1 209693774 6986351 complement(194735..195049) 1 NC_011312.1 transposase 195049 6986351 VSAL_I0155 Aliivibrio salmonicida LFI1238 transposase YP_002261702.1 194735 R 316275 CDS YP_002261703.1 209693775 6988339 complement(195363..197342) 1 NC_011312.1 membrane associated sulfatase 197342 6988339 VSAL_I0157 Aliivibrio salmonicida LFI1238 membrane associated sulfatase YP_002261703.1 195363 R 316275 CDS YP_002261704.1 209693776 6986353 complement(197379..198197) 1 NC_011312.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 198197 mutM 6986353 mutM Aliivibrio salmonicida LFI1238 formamidopyrimidine-DNA glycosylase YP_002261704.1 197379 R 316275 CDS YP_002261705.1 209693777 6988868 198490..199431 1 NC_011312.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 199431 rfaD 6988868 rfaD Aliivibrio salmonicida LFI1238 ADP-L-glycero-D-manno-heptose-6-epimerase YP_002261705.1 198490 D 316275 CDS YP_002261706.1 209693778 6988669 199602..200828 1 NC_011312.1 O-antigen ligase WaaL 200828 waaL 6988669 waaL Aliivibrio salmonicida LFI1238 O-antigen ligase WaaL YP_002261706.1 199602 D 316275 CDS YP_002261707.1 209693779 6989408 200825..201895 1 NC_011312.1 ADP-heptose-LPS heptosyltransferase II 201895 rfaF 6989408 rfaF Aliivibrio salmonicida LFI1238 ADP-heptose-LPS heptosyltransferase II YP_002261707.1 200825 D 316275 CDS YP_002261708.1 209693780 6989088 201889..203151 1 NC_011312.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 203151 kdtA 6989088 kdtA Aliivibrio salmonicida LFI1238 3-deoxy-D-manno-octulosonic-acid transferase YP_002261708.1 201889 D 316275 CDS YP_002261709.1 209693781 6988736 203198..204199 1 NC_011312.1 hypothetical protein 204199 6988736 VSAL_I0163 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261709.1 203198 D 316275 CDS YP_002261710.1 209693782 6986354 complement(204352..205308) 1 NC_011312.1 transposase 205308 6986354 VSAL_I0164 Aliivibrio salmonicida LFI1238 transposase YP_002261710.1 204352 R 316275 CDS YP_002261711.1 209693783 6986355 complement(205561..206664) 1 NC_011312.1 Similar to Campylobacter jejuni PseA UniProt:Q939J7 (378 aa) fasta scores: E()=6.6e-39, 36.216% id in 370 aa; pseudaminic acid biosynthesis protein 206664 6986355 VSAL_I0165 Aliivibrio salmonicida LFI1238 pseudaminic acid biosynthesis protein YP_002261711.1 205561 R 316275 CDS YP_002261712.1 209693784 6988900 complement(207356..208414) 1 NC_011312.1 Similar to Campylobacter coli PtmE UniProt:Q7X521 (220 aa) fasta scores: E()=5.9e-31, 43.439% id in 221 aa; nucleotidyl transferase 208414 6988900 VSAL_I0167 Aliivibrio salmonicida LFI1238 nucleotidyl transferase YP_002261712.1 207356 R 316275 CDS YP_002261713.1 209693785 6986357 complement(208430..209074) 1 NC_011312.1 acetyltransferase 209074 6986357 VSAL_I0168 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002261713.1 208430 R 316275 CDS YP_002261714.1 209693786 6986358 complement(209067..210140) 1 NC_011312.1 Similar to Campylobacter coli PtmC UniProt:Q7X523 (334 aa) fasta scores: E()=4.5e-31, 52.113% id in 355 aa; N-acetylneuraminic acid synthase 210140 6986358 VSAL_I0169 Aliivibrio salmonicida LFI1238 N-acetylneuraminic acid synthase YP_002261714.1 209067 R 316275 CDS YP_002261715.1 209693787 6986359 complement(210148..211332) 1 NC_011312.1 Similar to Campylobacter coli PtmD UniProt:Q7X522 (391 aa) fasta scores: E()=1.7e-50, 42.010% id in 388 aa; UDP-N-acetylglucosamine 2-epimerase 211332 6986359 VSAL_I0170 Aliivibrio salmonicida LFI1238 UDP-N-acetylglucosamine 2-epimerase YP_002261715.1 210148 R 316275 CDS YP_002261716.1 209693788 6986360 complement(211370..212515) 1 NC_011312.1 DegT/DnrJ/EryC1/StrS aminotransferase 212515 6986360 VSAL_I0171 Aliivibrio salmonicida LFI1238 DegT/DnrJ/EryC1/StrS aminotransferase YP_002261716.1 211370 R 316275 CDS YP_002261717.1 209693789 6986361 complement(212539..213729) 1 NC_011312.1 polysaccharide biosynthesis protein 213729 6986361 VSAL_I0172 Aliivibrio salmonicida LFI1238 polysaccharide biosynthesis protein YP_002261717.1 212539 R 316275 CDS YP_002261718.1 209693790 6986362 complement(213847..214968) 1 NC_011312.1 hypothetical protein 214968 6986362 VSAL_I0173 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261718.1 213847 R 316275 CDS YP_002261719.1 209693791 6986363 complement(214965..216107) 1 NC_011312.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 216107 rffA 6986363 rffA Aliivibrio salmonicida LFI1238 TDP-4-oxo-6-deoxy-D-glucose transaminase YP_002261719.1 214965 R 316275 CDS YP_002261720.1 209693792 6989411 complement(216890..217729) 1 NC_011312.1 glycosyl transferase family protein 217729 wavT 6989411 wavT Aliivibrio salmonicida LFI1238 glycosyl transferase family protein YP_002261720.1 216890 R 316275 CDS YP_002261721.1 209693793 6989413 complement(217730..218287) 1 NC_011312.1 dTDP-4-dehydrorhamnose 3,5-epimerase 218287 rmlC 6989413 rmlC Aliivibrio salmonicida LFI1238 dTDP-4-dehydrorhamnose 3,5-epimerase YP_002261721.1 217730 R 316275 CDS YP_002261722.1 209693794 6989124 complement(219197..220081) 1 NC_011312.1 glucose-1-phosphate thymidylyltransferase 220081 rmlA 6989124 rmlA Aliivibrio salmonicida LFI1238 glucose-1-phosphate thymidylyltransferase YP_002261722.1 219197 R 316275 CDS YP_002261723.1 209693795 6989115 complement(220081..221172) 1 NC_011312.1 dTDP-D-glucose-4,6-dehydratase 221172 rmlB 6989115 rmlB Aliivibrio salmonicida LFI1238 dTDP-D-glucose-4,6-dehydratase YP_002261723.1 220081 R 316275 CDS YP_002261724.1 209693796 6989118 complement(221194..223047) 1 NC_011312.1 membrane associated sulfatase 223047 6989118 VSAL_I0181 Aliivibrio salmonicida LFI1238 membrane associated sulfatase YP_002261724.1 221194 R 316275 CDS YP_002261725.1 209693797 6986364 complement(223080..223784) 1 NC_011312.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 223784 wavC 6986364 wavC Aliivibrio salmonicida LFI1238 3-deoxy-D-manno-octulosonic-acid kinase YP_002261725.1 223080 R 316275 CDS YP_002261726.1 209693798 6989409 224160..225230 1 NC_011312.1 glycosyl transferase family protein 225230 6989409 VSAL_I0183 Aliivibrio salmonicida LFI1238 glycosyl transferase family protein YP_002261726.1 224160 D 316275 CDS YP_002261727.1 209693799 6986365 225230..226012 1 NC_011312.1 glycosyl transferase family protein 226012 waaE 6986365 waaE Aliivibrio salmonicida LFI1238 glycosyl transferase family protein YP_002261727.1 225230 D 316275 CDS YP_002261728.1 209693800 6989406 226012..227043 1 NC_011312.1 Similar to Rhizobium meliloti lipopolysaccharide core biosynthesis glycosyl transferase LpsD UniProt:Q9R9N0 (343 aa) fasta scores: E()=1e-10, 25.852% id in 352 aa; glycosyl transferase 227043 6989406 VSAL_I0185 Aliivibrio salmonicida LFI1238 glycosyl transferase YP_002261728.1 226012 D 316275 CDS YP_002261729.1 209693801 6986366 227036..227524 1 NC_011312.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 227524 coaD 6986366 coaD Aliivibrio salmonicida LFI1238 phosphopantetheine adenylyltransferase YP_002261729.1 227036 D 316275 CDS YP_002261730.1 209693802 6988340 complement(227568..229547) 1 NC_011312.1 membrane protein 229547 6988340 VSAL_I0187 Aliivibrio salmonicida LFI1238 membrane protein YP_002261730.1 227568 R 316275 CDS YP_002261731.1 209693803 6986367 complement(229584..230402) 1 NC_011312.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 230402 mutM 6986367 mutM Aliivibrio salmonicida LFI1238 formamidopyrimidine-DNA glycosylase YP_002261731.1 229584 R 316275 CDS YP_002261732.1 209693804 6988869 complement(230590..231048) 1 NC_011312.1 hypothetical protein 231048 6988869 VSAL_I0189 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261732.1 230590 R 316275 CDS YP_002261733.1 209693805 6986368 complement(231313..231480) 1 NC_011312.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 231480 rpmG 6986368 rpmG Aliivibrio salmonicida LFI1238 50S ribosomal protein L33 YP_002261733.1 231313 R 316275 CDS YP_002261734.1 209693806 6989176 complement(231494..231730) 1 NC_011312.1 required for 70S ribosome assembly; 50S ribosomal protein L28 231730 rpmB 6989176 rpmB Aliivibrio salmonicida LFI1238 50S ribosomal protein L28 YP_002261734.1 231494 R 316275 CDS YP_002261735.1 209693807 6989170 complement(231926..232600) 1 NC_011312.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 232600 radC 6989170 radC Aliivibrio salmonicida LFI1238 DNA repair protein RadC YP_002261735.1 231926 R 316275 CDS YP_002261736.1 209693808 6989061 232816..234036 1 NC_011312.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 234036 coaBC 6989061 coaBC Aliivibrio salmonicida LFI1238 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_002261736.1 232816 D 316275 CDS YP_002261737.1 209693809 6988338 234260..234850 1 NC_011312.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 234850 slmA 6988338 slmA Aliivibrio salmonicida LFI1238 nucleoid occlusion protein YP_002261737.1 234260 D 316275 CDS YP_002261738.1 209693810 6989246 234906..235847 1 NC_011312.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 235847 htrB 6989246 htrB Aliivibrio salmonicida LFI1238 lipid A biosynthesis lauroyl acyltransferase YP_002261738.1 234906 D 316275 CDS YP_002261739.1 209693811 6988689 235883..236350 1 NC_011312.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 236350 greB 6988689 greB Aliivibrio salmonicida LFI1238 transcription elongation factor GreB YP_002261739.1 235883 D 316275 CDS YP_002261740.1 209693812 6988624 236541..238877 1 NC_011312.1 Similar to Escherichia coli S1 RNA binding domain (PDB 1SRO), evalue=5e-09 identity=(31, 75). Expression may be regulated by Fur; RNA binding protein 238877 6988624 VSAL_I0197 Aliivibrio salmonicida LFI1238 RNA binding protein YP_002261740.1 236541 D 316275 CDS YP_002261741.1 209693813 6986369 complement(239187..239666) 1 NC_011312.1 hypothetical protein 239666 6986369 VSAL_I0198 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261741.1 239187 R 316275 CDS YP_002261742.1 209693814 6986370 complement(239701..240486) 1 NC_011312.1 carboxylesterase BioH 240486 bioH 6986370 bioH Aliivibrio salmonicida LFI1238 carboxylesterase BioH YP_002261742.1 239701 R 316275 CDS YP_002261743.1 209693815 6986371 240896..241777 1 NC_011312.1 transposase 241777 6986371 VSAL_I0201 Aliivibrio salmonicida LFI1238 transposase YP_002261743.1 240896 D 316275 CDS YP_002261744.1 209693816 6986373 complement(244329..245636) 1 NC_011312.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 245636 envZ 6986373 envZ Aliivibrio salmonicida LFI1238 osmolarity sensor protein YP_002261744.1 244329 R 316275 CDS YP_002261745.1 209693817 6988443 complement(245950..246669) 1 NC_011312.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 246669 ompR 6988443 ompR Aliivibrio salmonicida LFI1238 osmolarity response regulator YP_002261745.1 245950 R 316275 CDS YP_002261746.1 209693818 6988930 246879..247619 1 NC_011312.1 Similar to Pseudomonas aeruginosa Partitioning protein ParA UniProt:Q4W1V5 (212 aa) fasta scores: E()=3.2e-05, 28.571% id in 168 aa; partitioning protein ParA 247619 6988930 VSAL_I0205 Aliivibrio salmonicida LFI1238 partitioning protein ParA YP_002261746.1 246879 D 316275 CDS YP_002261747.1 209693819 6986374 complement(247781..248290) 1 NC_011312.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 248290 pyrE 6986374 pyrE Aliivibrio salmonicida LFI1238 orotate phosphoribosyltransferase YP_002261747.1 247781 R 316275 CDS YP_002261748.1 209693820 6989050 complement(248525..249241) 1 NC_011312.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 249241 rph 6989050 rph Aliivibrio salmonicida LFI1238 ribonuclease PH YP_002261748.1 248525 R 316275 CDS YP_002261749.1 209693821 6989144 249413..250276 1 NC_011312.1 hypothetical protein 250276 6989144 VSAL_I0208 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261749.1 249413 D 316275 CDS YP_002261750.1 209693822 6986375 complement(250359..250787) 1 NC_011312.1 phosphate-starvation-inducible E 250787 6986375 VSAL_I0209 Aliivibrio salmonicida LFI1238 phosphate-starvation-inducible E YP_002261750.1 250359 R 316275 CDS YP_002261751.1 209693823 6986376 250943..251566 1 NC_011312.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 251566 gmk 6986376 gmk Aliivibrio salmonicida LFI1238 guanylate kinase YP_002261751.1 250943 D 316275 CDS YP_002261752.1 209693824 6988614 251679..251951 1 NC_011312.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 251951 rpoZ 6988614 rpoZ Aliivibrio salmonicida LFI1238 DNA-directed RNA polymerase subunit omega YP_002261752.1 251679 D 316275 CDS YP_002261753.1 209693825 6989187 252018..254147 1 NC_011312.1 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 254147 spoT 6989187 spoT Aliivibrio salmonicida LFI1238 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_002261753.1 252018 D 316275 CDS YP_002261754.1 209693826 6989324 complement(254992..256479) 1 NC_011312.1 transposase 256479 6989324 VSAL_I0214 Aliivibrio salmonicida LFI1238 transposase YP_002261754.1 254992 R 316275 CDS YP_002261755.1 209693827 6986377 complement(256551..256898) 1 NC_011312.1 transposase 256898 6986377 VSAL_I0215 Aliivibrio salmonicida LFI1238 transposase YP_002261755.1 256551 R 316275 CDS YP_002261756.1 209693828 6986378 complement(256895..257209) 1 NC_011312.1 transposase 257209 6986378 VSAL_I0216 Aliivibrio salmonicida LFI1238 transposase YP_002261756.1 256895 R 316275 CDS YP_002261757.1 209693829 6986379 complement(257294..258475) 1 NC_011312.1 protein HemY 258475 hemY 6986379 hemY Aliivibrio salmonicida LFI1238 protein HemY YP_002261757.1 257294 R 316275 CDS YP_002261758.1 209693830 6988651 complement(258472..259686) 1 NC_011312.1 Similar to Escherichia coli uroporphyrin-III C-methyltransferase HemX UniProt:P09127 (393 aa) fasta scores: E()=1.5e-36, 32.718% id in 379 aa. Possible alternative translational start site after codon 25; uroporphyrin-III C-methyltransferase HemX 259686 hemX 6988651 hemX Aliivibrio salmonicida LFI1238 uroporphyrin-III C-methyltransferase HemX YP_002261758.1 258472 R 316275 CDS YP_002261759.1 209693831 6988650 complement(259699..260445) 1 NC_011312.1 uroporphyrinogen III synthase HemD 260445 hemD 6988650 hemD Aliivibrio salmonicida LFI1238 uroporphyrinogen III synthase HemD YP_002261759.1 259699 R 316275 CDS YP_002261760.1 209693832 6988643 complement(260447..261382) 1 NC_011312.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 261382 hemC 6988643 hemC Aliivibrio salmonicida LFI1238 porphobilinogen deaminase YP_002261760.1 260447 R 316275 CDS YP_002261761.1 209693833 6988642 261640..264150 1 NC_011312.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 264150 cyaA 6988642 cyaA Aliivibrio salmonicida LFI1238 adenylate cyclase YP_002261761.1 261640 D 316275 CDS YP_002261762.1 209693834 6988364 264252..266456 1 NC_011312.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 266456 uvrD 6988364 uvrD Aliivibrio salmonicida LFI1238 DNA-dependent helicase II YP_002261762.1 264252 D 316275 CDS YP_002261763.1 209693835 6989368 complement(267419..268336) 1 NC_011312.1 chloramphenicol-sensitive protein RarD 268336 rarD 6989368 rarD Aliivibrio salmonicida LFI1238 chloramphenicol-sensitive protein RarD YP_002261763.1 267419 R 316275 CDS YP_002261764.1 209693836 6989064 268514..270349 1 NC_011312.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 270349 recQ 6989064 recQ Aliivibrio salmonicida LFI1238 ATP-dependent DNA helicase RecQ YP_002261764.1 268514 D 316275 CDS YP_002261765.1 209693837 6989084 270353..270643 1 NC_011312.1 hypothetical protein 270643 6989084 VSAL_I0225 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261765.1 270353 D 316275 CDS YP_002261766.1 209693838 6986380 270782..271447 1 NC_011312.1 hypothetical protein 271447 6986380 VSAL_I0226 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261766.1 270782 D 316275 CDS YP_002261767.1 209693839 6989219 272158..274962 1 NC_011312.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 274962 polA 6989219 polA Aliivibrio salmonicida LFI1238 DNA polymerase I YP_002261767.1 272158 D 316275 CDS YP_002261768.1 209693840 6989258 complement(275687..276361) 1 NC_011312.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 276361 engB 6989258 engB Aliivibrio salmonicida LFI1238 ribosome biogenesis GTP-binding protein YsxC YP_002261768.1 275687 R 316275 CDS YP_002261769.1 209693841 6988440 276622..277239 1 NC_011312.1 cytochrome c 277239 6988440 VSAL_I0229 Aliivibrio salmonicida LFI1238 cytochrome c YP_002261769.1 276622 D 316275 CDS YP_002261770.1 209693842 6986382 277381..278025 1 NC_011312.1 hypothetical protein 278025 6986382 VSAL_I0230 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261770.1 277381 D 316275 CDS YP_002261771.1 209693843 6986383 278025..278573 1 NC_011312.1 hypothetical protein 278573 6986383 VSAL_I0231 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261771.1 278025 D 316275 CDS YP_002261772.1 209693844 6986384 278576..279067 1 NC_011312.1 hypothetical protein 279067 6986384 VSAL_I0232 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261772.1 278576 D 316275 CDS YP_002261773.1 209693845 6986385 279179..280552 1 NC_011312.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 280552 hemN 6986385 hemN Aliivibrio salmonicida LFI1238 coproporphyrinogen III oxidase YP_002261773.1 279179 D 316275 CDS YP_002261774.1 209693846 6988649 280769..281083 1 NC_011312.1 transposase 281083 6988649 VSAL_I0234 Aliivibrio salmonicida LFI1238 transposase YP_002261774.1 280769 D 316275 CDS YP_002261775.1 209693847 6986386 281080..281427 1 NC_011312.1 transposase 281427 6986386 VSAL_I0235 Aliivibrio salmonicida LFI1238 transposase YP_002261775.1 281080 D 316275 CDS YP_002261776.1 209693848 6986387 281499..282986 1 NC_011312.1 transposase 282986 6986387 VSAL_I0236 Aliivibrio salmonicida LFI1238 transposase YP_002261776.1 281499 D 316275 CDS YP_002261777.1 209693849 6988341 complement(283303..284334) 1 NC_011312.1 Similar to Rhizobium meliloti lipopolysaccharide core biosynthesis glycosyl transferase LpsD UniProt:Q9R9N0 (EMBL:AF193023) (343 aa) fasta scores: E()=1e-10, 25.852% id in 352 aa; glycosyl transferase 284334 6988341 VSAL_I0238 Aliivibrio salmonicida LFI1238 glycosyl transferase YP_002261777.1 283303 R 316275 CDS YP_002261778.1 209693850 6986389 complement(284334..285116) 1 NC_011312.1 glucosyl transferase 285116 waaE 6986389 waaE Aliivibrio salmonicida LFI1238 glucosyl transferase YP_002261778.1 284334 R 316275 CDS YP_002261779.1 209693851 6989407 complement(285116..286237) 1 NC_011312.1 lipopolysaccharide core biosynthesis glycosyl transferase protein 286237 6989407 VSAL_I0240 Aliivibrio salmonicida LFI1238 lipopolysaccharide core biosynthesis glycosyl transferase protein YP_002261779.1 285116 R 316275 CDS YP_002261780.1 209693852 6986390 286562..287266 1 NC_011312.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 287266 wavC 6986390 wavC Aliivibrio salmonicida LFI1238 3-deoxy-D-manno-octulosonic-acid kinase YP_002261780.1 286562 D 316275 CDS YP_002261781.1 209693853 6989410 287299..289152 1 NC_011312.1 membrane associated sulfatase 289152 6989410 VSAL_I0242 Aliivibrio salmonicida LFI1238 membrane associated sulfatase YP_002261781.1 287299 D 316275 CDS YP_002261782.1 209693854 6986391 289174..290265 1 NC_011312.1 dTDP-D-glucose-4,6-dehydratase 290265 rmlB 6986391 rmlB Aliivibrio salmonicida LFI1238 dTDP-D-glucose-4,6-dehydratase YP_002261782.1 289174 D 316275 CDS YP_002261783.1 209693855 6989119 290265..291149 1 NC_011312.1 glucose-1-phosphate thymidylyltransferase 291149 rmlA 6989119 rmlA Aliivibrio salmonicida LFI1238 glucose-1-phosphate thymidylyltransferase YP_002261783.1 290265 D 316275 CDS YP_002261784.1 209693856 6989125 292059..292616 1 NC_011312.1 dTDP-4-dehydrorhamnose 3,5-epimerase 292616 rmlC 6989125 rmlC Aliivibrio salmonicida LFI1238 dTDP-4-dehydrorhamnose 3,5-epimerase YP_002261784.1 292059 D 316275 CDS YP_002261785.1 209693857 6989122 292617..293456 1 NC_011312.1 glycosyl transferase family protein 293456 wavT 6989122 wavT Aliivibrio salmonicida LFI1238 glycosyl transferase family protein YP_002261785.1 292617 D 316275 CDS YP_002261786.1 209693858 6989412 294239..295381 1 NC_011312.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 295381 rffA 6989412 rffA Aliivibrio salmonicida LFI1238 TDP-4-oxo-6-deoxy-D-glucose transaminase YP_002261786.1 294239 D 316275 CDS YP_002261787.1 209693859 6989091 295378..296499 1 NC_011312.1 hypothetical protein 296499 6989091 VSAL_I0250 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261787.1 295378 D 316275 CDS YP_002261788.1 209693860 6986392 296617..297807 1 NC_011312.1 capsular polysaccharide biosynthesis protein 297807 6986392 VSAL_I0251 Aliivibrio salmonicida LFI1238 capsular polysaccharide biosynthesis protein YP_002261788.1 296617 D 316275 CDS YP_002261789.1 209693861 6986393 297831..298976 1 NC_011312.1 DegT/DnrJ/EryC1/StrS aminotransferase 298976 6986393 VSAL_I0252 Aliivibrio salmonicida LFI1238 DegT/DnrJ/EryC1/StrS aminotransferase YP_002261789.1 297831 D 316275 CDS YP_002261790.1 209693862 6986394 299014..300198 1 NC_011312.1 Similar to Campylobacter coli PtmD UniProt:Q7X522 (391 aa) fasta scores: E()=1.7e-50, 42.010% id in 388 aa; UDP-N-acetylglucosamine 2-epimerase 300198 6986394 VSAL_I0253 Aliivibrio salmonicida LFI1238 UDP-N-acetylglucosamine 2-epimerase YP_002261790.1 299014 D 316275 CDS YP_002261791.1 209693863 6986395 300206..301279 1 NC_011312.1 Similar to Campylobacter coli PtmC UniProt:Q7X523 (334 aa) fasta scores: E()=4.5e-31, 52.113% id in 355 aa; N-acetylneuraminic acid synthase 301279 6986395 VSAL_I0254 Aliivibrio salmonicida LFI1238 N-acetylneuraminic acid synthase YP_002261791.1 300206 D 316275 CDS YP_002261792.1 209693864 6986396 301272..301916 1 NC_011312.1 acetyltransferase 301916 6986396 VSAL_I0255 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002261792.1 301272 D 316275 CDS YP_002261793.1 209693865 6986397 301932..302990 1 NC_011312.1 Similar to Campylobacter coli PtmE UniProt:Q7X521 (220 aa) fasta scores: E()=5.9e-31, 43.439% id in 221 aa; nucleotidyl transferase 302990 6986397 VSAL_I0256 Aliivibrio salmonicida LFI1238 nucleotidyl transferase YP_002261793.1 301932 D 316275 CDS YP_002261794.1 209693866 6986399 303682..304785 1 NC_011312.1 Similar to Campylobacter jejuni PseA UniProt:Q939J7 (378 aa) fasta scores: E()=3.7e-39, 36.216% id in 370 aa; outer membrane protein 304785 6986399 VSAL_I0258 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002261794.1 303682 D 316275 CDS YP_002261795.1 209693867 6986400 305038..305994 1 NC_011312.1 transposase 305994 6986400 VSAL_I0259 Aliivibrio salmonicida LFI1238 transposase YP_002261795.1 305038 D 316275 CDS YP_002261796.1 209693868 6986401 complement(306147..307148) 1 NC_011312.1 hypothetical protein 307148 6986401 VSAL_I0260 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261796.1 306147 R 316275 CDS YP_002261797.1 209693869 6986402 complement(307195..308457) 1 NC_011312.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 308457 6986402 VSAL_I0261 Aliivibrio salmonicida LFI1238 3-deoxy-D-manno-octulosonic-acid transferase YP_002261797.1 307195 R 316275 CDS YP_002261798.1 209693870 6986403 complement(308451..309521) 1 NC_011312.1 ADP-heptose-LPS heptosyltransferase II 309521 6986403 VSAL_I0262 Aliivibrio salmonicida LFI1238 ADP-heptose-LPS heptosyltransferase II YP_002261798.1 308451 R 316275 CDS YP_002261799.1 209693871 6986404 complement(309518..310744) 1 NC_011312.1 Similar to Vibrio cholerae O-antigen ligase WaaL UniProt:Q8RJ54 (399 aa) fasta scores: E()=7e-14, 27.094% id in 406 aa; O-antigen ligase WaaL 310744 6986404 VSAL_I0263 Aliivibrio salmonicida LFI1238 O-antigen ligase WaaL YP_002261799.1 309518 R 316275 CDS YP_002261800.1 209693872 6986405 complement(310915..311856) 1 NC_011312.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 311856 rfaD 6986405 rfaD Aliivibrio salmonicida LFI1238 ADP-L-glycero-D-manno-heptose-6-epimerase YP_002261800.1 310915 R 316275 CDS YP_002261801.1 209693873 6988670 312237..313691 1 NC_011312.1 metallo-beta-lactamase 313691 6988670 VSAL_I0265 Aliivibrio salmonicida LFI1238 metallo-beta-lactamase YP_002261801.1 312237 D 316275 CDS YP_002261802.1 209693874 6986406 313868..314215 1 NC_011312.1 hypothetical protein 314215 6986406 VSAL_I0266 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261802.1 313868 D 316275 CDS YP_002261803.1 209693875 6986407 314332..314976 1 NC_011312.1 TetR family transcriptional regulator 314976 6986407 VSAL_I0267 Aliivibrio salmonicida LFI1238 TetR family transcriptional regulator YP_002261803.1 314332 D 316275 CDS YP_002261804.1 209693876 6986408 315135..316286 1 NC_011312.1 hypothetical protein 316286 6986408 VSAL_I0268 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261804.1 315135 D 316275 CDS YP_002261805.1 209693877 6986409 316286..317005 1 NC_011312.1 hypothetical protein 317005 6986409 VSAL_I0269 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261805.1 316286 D 316275 CDS YP_002261806.1 209693878 6986410 317174..317698 1 NC_011312.1 lipoprotein 317698 6986410 VSAL_I0270 Aliivibrio salmonicida LFI1238 lipoprotein YP_002261806.1 317174 D 316275 CDS YP_002261807.1 209693879 6986411 317676..318617 1 NC_011312.1 hypothetical protein 318617 6986411 VSAL_I0271 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261807.1 317676 D 316275 CDS YP_002261808.1 209693880 6986412 complement(318954..321161) 1 NC_011312.1 outer membrane protein 321161 6986412 VSAL_I0272 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002261808.1 318954 R 316275 CDS YP_002261809.1 209693881 6986413 complement(321164..321928) 1 NC_011312.1 hypothetical protein 321928 6986413 VSAL_I0273 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261809.1 321164 R 316275 CDS YP_002261810.1 209693882 6986414 complement(321935..322600) 1 NC_011312.1 lipoprotein 322600 6986414 VSAL_I0274 Aliivibrio salmonicida LFI1238 lipoprotein YP_002261810.1 321935 R 316275 CDS YP_002261811.1 209693883 6986415 complement(322685..322942) 1 NC_011312.1 membrane protein 322942 6986415 VSAL_I0275 Aliivibrio salmonicida LFI1238 membrane protein YP_002261811.1 322685 R 316275 CDS YP_002261812.1 209693884 6986416 323139..324506 1 NC_011312.1 hypothetical protein 324506 6986416 VSAL_I0276 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261812.1 323139 D 316275 CDS YP_002261813.1 209693885 6986417 324575..327184 1 NC_011312.1 polysaccharide export periplasmic protein 327184 6986417 VSAL_I0277 Aliivibrio salmonicida LFI1238 polysaccharide export periplasmic protein YP_002261813.1 324575 D 316275 CDS YP_002261814.1 209693886 6986418 327417..328394 1 NC_011312.1 O-antigen length determinant protein 328394 wzz 6986418 wzz Aliivibrio salmonicida LFI1238 O-antigen length determinant protein YP_002261814.1 327417 D 316275 CDS YP_002261815.1 209693887 6989417 328784..329098 1 NC_011312.1 transposase 329098 6989417 VSAL_I0279 Aliivibrio salmonicida LFI1238 transposase YP_002261815.1 328784 D 316275 CDS YP_002261816.1 209693888 6986419 329095..329442 1 NC_011312.1 transposase 329442 6986419 VSAL_I0280 Aliivibrio salmonicida LFI1238 transposase YP_002261816.1 329095 D 316275 CDS YP_002261817.1 209693889 6986421 complement(331420..331788) 1 NC_011312.1 hypothetical protein 331788 6986421 VSAL_I0282 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261817.1 331420 R 316275 CDS YP_002261818.1 209693890 6986422 complement(332081..332851) 1 NC_011312.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 332851 tpiA 6986422 tpiA Aliivibrio salmonicida LFI1238 triosephosphate isomerase YP_002261818.1 332081 R 316275 CDS YP_002261819.1 209693891 6989316 333134..333484 1 NC_011312.1 5-carboxymethyl-2-hydroxymuconate isomerase 333484 hpcD 6989316 hpcD Aliivibrio salmonicida LFI1238 5-carboxymethyl-2-hydroxymuconate isomerase YP_002261819.1 333134 D 316275 CDS YP_002261820.1 209693892 6986423 333689..334570 1 NC_011312.1 transposase 334570 6986423 VSAL_I0286 Aliivibrio salmonicida LFI1238 transposase YP_002261820.1 333689 D 316275 CDS YP_002261821.1 209693893 6986424 complement(335317..336324) 1 NC_011312.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 336324 glpX 6986424 glpX Aliivibrio salmonicida LFI1238 fructose 1,6-bisphosphatase II YP_002261821.1 335317 R 316275 CDS YP_002261822.1 209693894 6988603 336692..336934 1 NC_011312.1 hypothetical protein 336934 6988603 VSAL_I0288 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261822.1 336692 D 316275 CDS YP_002261823.1 209693895 6986425 337220..337534 1 NC_011312.1 transposase 337534 6986425 VSAL_I0289 Aliivibrio salmonicida LFI1238 transposase YP_002261823.1 337220 D 316275 CDS YP_002261824.1 209693896 6986426 337531..337878 1 NC_011312.1 transposase 337878 6986426 VSAL_I0290 Aliivibrio salmonicida LFI1238 transposase YP_002261824.1 337531 D 316275 CDS YP_002261825.1 209693897 6986427 337950..339437 1 NC_011312.1 transposase 339437 6986427 VSAL_I0291 Aliivibrio salmonicida LFI1238 transposase YP_002261825.1 337950 D 316275 CDS YP_002261826.1 209693898 6986428 complement(339695..340192) 1 NC_011312.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 340192 rraA 6986428 rraA Aliivibrio salmonicida LFI1238 ribonuclease activity regulator protein RraA YP_002261826.1 339695 R 316275 CDS YP_002261827.1 209693899 6989208 complement(340286..341194) 1 NC_011312.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 341194 menA 6989208 menA Aliivibrio salmonicida LFI1238 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_002261827.1 340286 R 316275 CDS YP_002261828.1 209693900 6988781 complement(341282..342151) 1 NC_011312.1 phosphoribulokinase 342151 cfxP 6988781 cfxP Aliivibrio salmonicida LFI1238 phosphoribulokinase YP_002261828.1 341282 R 316275 CDS YP_002261829.1 209693901 6988315 complement(342253..342495) 1 NC_011312.1 hypothetical protein 342495 6988315 VSAL_I0295 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261829.1 342253 R 316275 CDS YP_002261830.1 209693902 6986429 complement(342530..343498) 1 NC_011312.1 hydrolase 343498 6986429 VSAL_I0296 Aliivibrio salmonicida LFI1238 hydrolase YP_002261830.1 342530 R 316275 CDS YP_002261831.1 209693903 6986430 complement(343518..344000) 1 NC_011312.1 hypothetical protein 344000 6986430 VSAL_I0297 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261831.1 343518 R 316275 CDS YP_002261832.1 209693904 6986431 complement(343984..345915) 1 NC_011312.1 ABC transporter ATP-binding protein 345915 6986431 VSAL_I0298 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002261832.1 343984 R 316275 CDS YP_002261833.1 209693905 6986432 346064..346636 1 NC_011312.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 346636 kefG 6986432 kefG Aliivibrio salmonicida LFI1238 glutathione-regulated potassium-efflux system ancillary protein KefG YP_002261833.1 346064 D 316275 CDS YP_002261834.1 209693906 6988738 346636..348426 1 NC_011312.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 348426 kefB 6988738 kefB Aliivibrio salmonicida LFI1238 glutathione-regulated potassium-efflux system protein KefB YP_002261834.1 346636 D 316275 CDS YP_002261835.1 209693907 6988737 348447..348641 1 NC_011312.1 hypothetical protein 348641 6988737 VSAL_I0301 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261835.1 348447 D 316275 CDS YP_002261836.1 209693908 6986433 348699..349289 1 NC_011312.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 349289 slyD 6986433 slyD Aliivibrio salmonicida LFI1238 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD YP_002261836.1 348699 D 316275 CDS YP_002261837.1 209693909 6989248 complement(349477..349701) 1 NC_011312.1 Similar to Escherichia coli Protein SlyX UniProt:P0A8R4 (72 aa) fasta scores: E()=1.4e-06, 37.313% id in 67 aa; hypothetical protein 349701 6989248 VSAL_I0303 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261837.1 349477 R 316275 CDS YP_002261838.1 209693910 6986434 complement(349698..350714) 1 NC_011312.1 lipoprotein 350714 6986434 VSAL_I0304 Aliivibrio salmonicida LFI1238 lipoprotein YP_002261838.1 349698 R 316275 CDS YP_002261839.1 209693911 6986435 350844..351638 1 NC_011312.1 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 351638 fkpA 6986435 fkpA Aliivibrio salmonicida LFI1238 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA YP_002261839.1 350844 D 316275 CDS YP_002261840.1 209693912 6988500 351827..352540 1 NC_011312.1 DNA-binding protein 352540 6988500 VSAL_I0306 Aliivibrio salmonicida LFI1238 DNA-binding protein YP_002261840.1 351827 D 316275 CDS YP_002261841.1 209693913 6986436 352537..352929 1 NC_011312.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 352929 dsrE 6986436 dsrE Aliivibrio salmonicida LFI1238 sulfur transfer complex subunit TusD YP_002261841.1 352537 D 316275 CDS YP_002261842.1 209693914 6988428 352959..353315 1 NC_011312.1 intracellular sulfur oxidation protein DsrF 353315 dsrF 6988428 dsrF Aliivibrio salmonicida LFI1238 intracellular sulfur oxidation protein DsrF YP_002261842.1 352959 D 316275 CDS YP_002261843.1 209693915 6988429 353325..353612 1 NC_011312.1 hypothetical protein 353612 6988429 VSAL_I0309 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261843.1 353325 D 316275 CDS YP_002261844.1 209693916 6986437 353778..354152 1 NC_011312.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 354152 rpsL 6986437 rpsL Aliivibrio salmonicida LFI1238 30S ribosomal protein S12 YP_002261844.1 353778 D 316275 CDS YP_002261845.1 209693917 6989199 354263..354733 1 NC_011312.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 354733 rpsG 6989199 rpsG Aliivibrio salmonicida LFI1238 30S ribosomal protein S7 YP_002261845.1 354263 D 316275 CDS YP_002261846.1 209693918 6989194 354867..356954 1 NC_011312.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 356954 fusA 6989194 fusA Aliivibrio salmonicida LFI1238 elongation factor G YP_002261846.1 354867 D 316275 CDS YP_002261847.1 209693919 6988577 357073..358257 1 NC_011312.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 358257 tuf 6988577 tuf Aliivibrio salmonicida LFI1238 elongation factor Tu YP_002261847.1 357073 D 316275 CDS YP_002261848.1 209693920 6989342 359387..359698 1 NC_011312.1 transposase 359698 6989342 VSAL_I0315 Aliivibrio salmonicida LFI1238 transposase YP_002261848.1 359387 D 316275 CDS YP_002261849.1 209693921 6986438 359695..360042 1 NC_011312.1 transposase 360042 6986438 VSAL_I0316 Aliivibrio salmonicida LFI1238 transposase YP_002261849.1 359695 D 316275 CDS YP_002261850.1 209693922 6986439 complement(360130..361011) 1 NC_011312.1 transposase 361011 6986439 VSAL_I0317 Aliivibrio salmonicida LFI1238 transposase YP_002261850.1 360130 R 316275 CDS YP_002261851.1 209693923 6986441 363557..363868 1 NC_011312.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 363868 rpsJ 6986441 rpsJ Aliivibrio salmonicida LFI1238 30S ribosomal protein S10 YP_002261851.1 363557 D 316275 CDS YP_002261852.1 209693924 6989197 363881..364510 1 NC_011312.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 364510 rplC 6989197 rplC Aliivibrio salmonicida LFI1238 50S ribosomal protein L3 YP_002261852.1 363881 D 316275 CDS YP_002261853.1 209693925 6989148 364528..365130 1 NC_011312.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 365130 rplD 6989148 rplD Aliivibrio salmonicida LFI1238 50S ribosomal protein L4 YP_002261853.1 364528 D 316275 CDS YP_002261854.1 209693926 6989149 365127..365429 1 NC_011312.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 365429 rplW 6989149 rplW Aliivibrio salmonicida LFI1238 50S ribosomal protein L23 YP_002261854.1 365127 D 316275 CDS YP_002261855.1 209693927 6989166 365445..366269 1 NC_011312.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 366269 rplB 6989166 rplB Aliivibrio salmonicida LFI1238 50S ribosomal protein L2 YP_002261855.1 365445 D 316275 CDS YP_002261856.1 209693928 6989147 366289..366567 1 NC_011312.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 366567 rpsS 6989147 rpsS Aliivibrio salmonicida LFI1238 30S ribosomal protein S19 YP_002261856.1 366289 D 316275 CDS YP_002261857.1 209693929 6989206 366578..366910 1 NC_011312.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 366910 rplV 6989206 rplV Aliivibrio salmonicida LFI1238 50S ribosomal protein L22 YP_002261857.1 366578 D 316275 CDS YP_002261858.1 209693930 6989165 366930..367628 1 NC_011312.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 367628 rpsC 6989165 rpsC Aliivibrio salmonicida LFI1238 30S ribosomal protein S3 YP_002261858.1 366930 D 316275 CDS YP_002261859.1 209693931 6989190 367640..368050 1 NC_011312.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 368050 rplP 6989190 rplP Aliivibrio salmonicida LFI1238 50S ribosomal protein L16 YP_002261859.1 367640 D 316275 CDS YP_002261860.1 209693932 6989159 368050..368241 1 NC_011312.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 368241 rpmC 6989159 rpmC Aliivibrio salmonicida LFI1238 50S ribosomal protein L29 YP_002261860.1 368050 D 316275 CDS YP_002261861.1 209693933 6989171 368241..368495 1 NC_011312.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 368495 rpsQ 6989171 rpsQ Aliivibrio salmonicida LFI1238 30S ribosomal protein S17 YP_002261861.1 368241 D 316275 CDS YP_002261862.1 209693934 6989204 368658..369029 1 NC_011312.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 369029 rplN 6989204 rplN Aliivibrio salmonicida LFI1238 50S ribosomal protein L14 YP_002261862.1 368658 D 316275 CDS YP_002261863.1 209693935 6989157 369040..369357 1 NC_011312.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 369357 rplX 6989157 rplX Aliivibrio salmonicida LFI1238 50S ribosomal protein L24 YP_002261863.1 369040 D 316275 CDS YP_002261864.1 209693936 6989167 369385..369924 1 NC_011312.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 369924 rplE 6989167 rplE Aliivibrio salmonicida LFI1238 50S ribosomal protein L5 YP_002261864.1 369385 D 316275 CDS YP_002261865.1 209693937 6989150 369942..370247 1 NC_011312.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 370247 rpsN 6989150 rpsN Aliivibrio salmonicida LFI1238 30S ribosomal protein S14 YP_002261865.1 369942 D 316275 CDS YP_002261866.1 209693938 6989201 370277..370669 1 NC_011312.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 370669 rpsH 6989201 rpsH Aliivibrio salmonicida LFI1238 30S ribosomal protein S8 YP_002261866.1 370277 D 316275 CDS YP_002261867.1 209693939 6989195 370682..371215 1 NC_011312.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 371215 rplF 6989195 rplF Aliivibrio salmonicida LFI1238 50S ribosomal protein L6 YP_002261867.1 370682 D 316275 CDS YP_002261868.1 209693940 6989151 371225..371578 1 NC_011312.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 371578 rplR 6989151 rplR Aliivibrio salmonicida LFI1238 50S ribosomal protein L18 YP_002261868.1 371225 D 316275 CDS YP_002261869.1 209693941 6989161 371593..372093 1 NC_011312.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 372093 rpsE 6989161 rpsE Aliivibrio salmonicida LFI1238 30S ribosomal protein S5 YP_002261869.1 371593 D 316275 CDS YP_002261870.1 209693942 6989192 372099..372278 1 NC_011312.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 372278 rpmD 6989192 rpmD Aliivibrio salmonicida LFI1238 50S ribosomal protein L30 YP_002261870.1 372099 D 316275 CDS YP_002261871.1 209693943 6989172 372285..372719 1 NC_011312.1 late assembly protein; 50S ribosomal protein L15 372719 rplO 6989172 rplO Aliivibrio salmonicida LFI1238 50S ribosomal protein L15 YP_002261871.1 372285 D 316275 CDS YP_002261872.1 209693944 6989158 372740..374071 1 NC_011312.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 374071 secY 6989158 secY Aliivibrio salmonicida LFI1238 preprotein translocase subunit SecY YP_002261872.1 372740 D 316275 CDS YP_002261873.1 209693945 6988092 374362..374718 1 NC_011312.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 374718 rpsM 6988092 rpsM Aliivibrio salmonicida LFI1238 30S ribosomal protein S13 YP_002261873.1 374362 D 316275 CDS YP_002261874.1 209693946 6989200 374740..375129 1 NC_011312.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 375129 rpsK 6989200 rpsK Aliivibrio salmonicida LFI1238 30S ribosomal protein S11 YP_002261874.1 374740 D 316275 CDS YP_002261875.1 209693947 6989198 375161..375781 1 NC_011312.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 375781 rpsD 6989198 rpsD Aliivibrio salmonicida LFI1238 30S ribosomal protein S4 YP_002261875.1 375161 D 316275 CDS YP_002261876.1 209693948 6989191 375805..376794 1 NC_011312.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 376794 rpoA 6989191 rpoA Aliivibrio salmonicida LFI1238 DNA-directed RNA polymerase subunit alpha YP_002261876.1 375805 D 316275 CDS YP_002261877.1 209693949 6989179 376831..377211 1 NC_011312.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 377211 rplQ 6989179 rplQ Aliivibrio salmonicida LFI1238 50S ribosomal protein L17 YP_002261877.1 376831 D 316275 CDS YP_002261878.1 209693950 6989160 complement(377275..378285) 1 NC_011312.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 378285 fbp 6989160 fbp Aliivibrio salmonicida LFI1238 fructose-1,6-bisphosphatase YP_002261878.1 377275 R 316275 CDS YP_002261879.1 209693951 6988481 378499..379860 1 NC_011312.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelat ligase 379860 mpl 6988481 mpl Aliivibrio salmonicida LFI1238 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelat ligase YP_002261879.1 378499 D 316275 CDS YP_002261880.1 209693952 6988825 379862..380491 1 NC_011312.1 aromatic acid decarboxylase 380491 6988825 VSAL_I0348 Aliivibrio salmonicida LFI1238 aromatic acid decarboxylase YP_002261880.1 379862 D 316275 CDS YP_002261881.1 209693953 6988093 380696..381712 1 NC_011312.1 part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 381712 tbpA 6988093 tbpA Aliivibrio salmonicida LFI1238 thiamine transporter substrate binding subunit YP_002261881.1 380696 D 316275 CDS YP_002261882.1 209693954 6989276 381775..383397 1 NC_011312.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 383397 thiP 6989276 thiP Aliivibrio salmonicida LFI1238 thiamine transporter membrane protein YP_002261882.1 381775 D 316275 CDS YP_002261883.1 209693955 6989289 383397..384071 1 NC_011312.1 thiamine transport ATP-binding protein ThiQ 384071 thiQ 6989289 thiQ Aliivibrio salmonicida LFI1238 thiamine transport ATP-binding protein ThiQ YP_002261883.1 383397 D 316275 CDS YP_002261884.1 209693956 6989290 384295..387204 1 NC_011312.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 387204 rapA 6989290 rapA Aliivibrio salmonicida LFI1238 ATP-dependent helicase HepA YP_002261884.1 384295 D 316275 CDS YP_002261885.1 209693957 6989063 387207..387941 1 NC_011312.1 ribosomal large subunit pseudouridine synthase A 387941 rluA 6989063 rluA Aliivibrio salmonicida LFI1238 ribosomal large subunit pseudouridine synthase A YP_002261885.1 387207 D 316275 CDS YP_002261886.1 209693958 6989108 complement(388002..388439) 1 NC_011312.1 universal stress protein F 388439 uspF 6989108 uspF Aliivibrio salmonicida LFI1238 universal stress protein F YP_002261886.1 388002 R 316275 CDS YP_002261887.1 209693959 6989363 complement(388495..391074) 1 NC_011312.1 integral membrane transport protein 391074 6989363 VSAL_I0355 Aliivibrio salmonicida LFI1238 integral membrane transport protein YP_002261887.1 388495 R 316275 CDS YP_002261888.1 209693960 6986443 complement(391308..392282) 1 NC_011312.1 hypothetical protein 392282 6986443 VSAL_I0356 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261888.1 391308 R 316275 CDS YP_002261889.1 209693961 6986445 complement(394047..394517) 1 NC_011312.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 394517 argR 6986445 argR Aliivibrio salmonicida LFI1238 arginine repressor YP_002261889.1 394047 R 316275 CDS YP_002261890.1 209693962 6988256 394789..395724 1 NC_011312.1 oxidizes malate to oxaloacetate; malate dehydrogenase 395724 mdh 6988256 mdh Aliivibrio salmonicida LFI1238 malate dehydrogenase YP_002261890.1 394789 D 316275 CDS YP_002261891.1 209693963 6988780 complement(395817..396788) 1 NC_011312.1 octaprenyl-diphosphate synthase 396788 ispB 6988780 ispB Aliivibrio salmonicida LFI1238 octaprenyl-diphosphate synthase YP_002261891.1 395817 R 316275 CDS YP_002261892.1 209693964 6988724 397065..397376 1 NC_011312.1 50S ribosomal protein L21 397376 rplU 6988724 rplU Aliivibrio salmonicida LFI1238 50S ribosomal protein L21 YP_002261892.1 397065 D 316275 CDS YP_002261893.1 209693965 6989164 397394..397651 1 NC_011312.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 397651 rpmA 6989164 rpmA Aliivibrio salmonicida LFI1238 50S ribosomal protein L27 YP_002261893.1 397394 D 316275 CDS YP_002261894.1 209693966 6989169 397929..399107 1 NC_011312.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 399107 obgE 6989169 obgE Aliivibrio salmonicida LFI1238 GTPase ObgE YP_002261894.1 397929 D 316275 CDS YP_002261895.1 209693967 6986446 399220..399999 1 NC_011312.1 membrane protein 399999 6986446 VSAL_I0364 Aliivibrio salmonicida LFI1238 membrane protein YP_002261895.1 399220 D 316275 CDS YP_002261896.1 209693968 6986447 399999..400490 1 NC_011312.1 membrane protein 400490 6986447 VSAL_I0365 Aliivibrio salmonicida LFI1238 membrane protein YP_002261896.1 399999 D 316275 CDS YP_002261897.1 209693969 6986448 400556..401077 1 NC_011312.1 Expression may be regulated by Fur; dihydrofolate reductase type 3 401077 folA 6986448 folA Aliivibrio salmonicida LFI1238 dihydrofolate reductase type 3 YP_002261897.1 400556 D 316275 CDS YP_002261898.1 209693970 6988552 complement(401288..402109) 1 NC_011312.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 402109 apaH 6988552 apaH Aliivibrio salmonicida LFI1238 diadenosine tetraphosphatase YP_002261898.1 401288 R 316275 CDS YP_002261899.1 209693971 6988241 complement(402206..403039) 1 NC_011312.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 403039 ksgA 6988241 ksgA Aliivibrio salmonicida LFI1238 dimethyladenosine transferase YP_002261899.1 402206 R 316275 CDS YP_002261900.1 209693972 6988739 complement(403036..404025) 1 NC_011312.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 404025 pdxA 6988739 pdxA Aliivibrio salmonicida LFI1238 4-hydroxythreonine-4-phosphate dehydrogenase YP_002261900.1 403036 R 316275 CDS YP_002261901.1 209693973 6988953 complement(404018..405328) 1 NC_011312.1 chaperone SurA precursor 405328 surA 6988953 surA Aliivibrio salmonicida LFI1238 chaperone SurA precursor YP_002261901.1 404018 R 316275 CDS YP_002261902.1 209693974 6989269 complement(405399..407753) 1 NC_011312.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 407753 imp 6989269 imp Aliivibrio salmonicida LFI1238 organic solvent tolerance protein YP_002261902.1 405399 R 316275 CDS YP_002261903.1 209693975 6988715 407960..408811 1 NC_011312.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 408811 djlA 6988715 djlA Aliivibrio salmonicida LFI1238 Dna-J like membrane chaperone protein YP_002261903.1 407960 D 316275 CDS YP_002261904.1 209693976 6988409 complement(408841..409680) 1 NC_011312.1 hypothetical protein 409680 6988409 VSAL_I0373 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261904.1 408841 R 316275 CDS YP_002261905.1 209693977 6986449 complement(409804..410406) 1 NC_011312.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 410406 leuD 6986449 leuD Aliivibrio salmonicida LFI1238 isopropylmalate isomerase small subunit YP_002261905.1 409804 R 316275 CDS YP_002261906.1 209693978 6988746 complement(410418..411833) 1 NC_011312.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 411833 leuC 6988746 leuC Aliivibrio salmonicida LFI1238 isopropylmalate isomerase large subunit YP_002261906.1 410418 R 316275 CDS YP_002261907.1 209693979 6988745 complement(411849..412940) 1 NC_011312.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 412940 leuB 6988745 leuB Aliivibrio salmonicida LFI1238 3-isopropylmalate dehydrogenase YP_002261907.1 411849 R 316275 CDS YP_002261908.1 209693980 6988744 complement(413018..414565) 1 NC_011312.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 414565 leuA 6988744 leuA Aliivibrio salmonicida LFI1238 2-isopropylmalate synthase YP_002261908.1 413018 R 316275 CDS YP_002261909.1 209693981 6986450 415681..417000 1 NC_011312.1 hypothetical protein 417000 6986450 VSAL_I0379 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261909.1 415681 D 316275 CDS YP_002261910.1 209693982 6986451 416997..420101 1 NC_011312.1 integral membrane protein, AcrB/AcrD/AcrF family 420101 6986451 VSAL_I0380 Aliivibrio salmonicida LFI1238 integral membrane protein, AcrB/AcrD/AcrF family YP_002261910.1 416997 D 316275 CDS YP_002261911.1 209693983 6986452 complement(420124..421125) 1 NC_011312.1 130 amino acid residues longer than the V.fischeri homologue; hypothetical protein 421125 6986452 VSAL_I0381 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261911.1 420124 R 316275 CDS YP_002261912.1 209693984 6986453 421307..422704 1 NC_011312.1 unwinds double stranded DNA; replicative DNA helicase 422704 dnaB 6986453 dnaB Aliivibrio salmonicida LFI1238 replicative DNA helicase YP_002261912.1 421307 D 316275 CDS YP_002261913.1 209693985 6988412 422726..423802 1 NC_011312.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 423802 alr 6988412 alr Aliivibrio salmonicida LFI1238 alanine racemase YP_002261913.1 422726 D 316275 CDS YP_002261914.1 209693986 6988231 423817..425037 1 NC_011312.1 hypothetical protein 425037 6988231 VSAL_I0384 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261914.1 423817 D 316275 CDS YP_002261915.1 209693987 6986454 425233..426885 1 NC_011312.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 426885 pgi 6986454 pgi Aliivibrio salmonicida LFI1238 glucose-6-phosphate isomerase YP_002261915.1 425233 D 316275 CDS YP_002261916.1 209693988 6988964 complement(426981..427475) 1 NC_011312.1 chemotaxis protein 427475 6988964 VSAL_I0386 Aliivibrio salmonicida LFI1238 chemotaxis protein YP_002261916.1 426981 R 316275 CDS YP_002261917.1 209693989 6986455 complement(427496..427945) 1 NC_011312.1 zinc uptake regulation protein 427945 zur 6986455 zur Aliivibrio salmonicida LFI1238 zinc uptake regulation protein YP_002261917.1 427496 R 316275 CDS YP_002261918.1 209693990 6989444 428519..428800 1 NC_011312.1 phage protein 428800 6989444 VSAL_I0388 Aliivibrio salmonicida LFI1238 phage protein YP_002261918.1 428519 D 316275 CDS YP_002261919.1 209693991 6986456 complement(428844..429683) 1 NC_011312.1 Similar to central part of Vibrio parahaemolyticus (Q8L0W3) Hypothetical protein (Fragment); phage protein 429683 6986456 VSAL_I0389 Aliivibrio salmonicida LFI1238 phage protein YP_002261919.1 428844 R 316275 CDS YP_002261920.1 209693992 6986457 429880..430272 1 NC_011312.1 phage protein 430272 6986457 VSAL_I0390 Aliivibrio salmonicida LFI1238 phage protein YP_002261920.1 429880 D 316275 CDS YP_002261921.1 209693993 6986458 430429..431454 1 NC_011312.1 ADP-ribose binding protein 431454 6986458 VSAL_I0391 Aliivibrio salmonicida LFI1238 ADP-ribose binding protein YP_002261921.1 430429 D 316275 CDS YP_002261922.1 209693994 6986459 complement(431463..431678) 1 NC_011312.1 phage protein 431678 6986459 VSAL_I0392 Aliivibrio salmonicida LFI1238 phage protein YP_002261922.1 431463 R 316275 CDS YP_002261923.1 209693995 6986460 431804..432226 1 NC_011312.1 transposase 432226 6986460 VSAL_I0393 Aliivibrio salmonicida LFI1238 transposase YP_002261923.1 431804 D 316275 CDS YP_002261924.1 209693996 6986461 432244..432810 1 NC_011312.1 transposase 432810 6986461 VSAL_I0394 Aliivibrio salmonicida LFI1238 transposase YP_002261924.1 432244 D 316275 CDS YP_002261925.1 209693997 6986463 complement(433433..434509) 1 NC_011312.1 Weakly similar to Bacteriophage BFK20 ORF43 UniProt:Q3V5F2 (982 aa) fasta scores: E()=1.5e-11, 33.803% id in 213 aa; phage protein 434509 6986463 VSAL_I0396 Aliivibrio salmonicida LFI1238 phage protein YP_002261925.1 433433 R 316275 CDS YP_002261926.1 209693998 6986464 complement(434540..435601) 1 NC_011312.1 Similar to Escherichia coli Shufflon-specific DNA recombinase rci UniProt:P16470 (384 aa) fasta scores: E()=1e-14, 33.065% id in 248 aa; shufflon-specific DNA recombinase 435601 6986464 VSAL_I0397 Aliivibrio salmonicida LFI1238 shufflon-specific DNA recombinase YP_002261926.1 434540 R 316275 CDS YP_002261927.1 209693999 6986465 complement(435736..436806) 1 NC_011312.1 Similar to Escherichia coli Shufflon-specific DNA recombinase rci UniProt:P10487 (384 aa) fasta scores: E()=1.3e-11, 27.211% id in 294 aa; shufflon-specific DNA recombinase 436806 6986465 VSAL_I0398 Aliivibrio salmonicida LFI1238 shufflon-specific DNA recombinase YP_002261927.1 435736 R 316275 CDS YP_002261928.1 209694000 6986466 437014..438030 1 NC_011312.1 tRNA-dihydrouridine synthase A 438030 dusA 6986466 dusA Aliivibrio salmonicida LFI1238 tRNA-dihydrouridine synthase A YP_002261928.1 437014 D 316275 CDS YP_002261929.1 209694001 6988431 438149..438847 1 NC_011312.1 hypothetical protein 438847 6988431 VSAL_I0400 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261929.1 438149 D 316275 CDS YP_002261930.1 209694002 6986467 438951..439223 1 NC_011312.1 Alternative start at codon 15; hypothetical protein 439223 6986467 VSAL_I0401 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261930.1 438951 D 316275 CDS YP_002261931.1 209694003 6986468 439340..441181 1 NC_011312.1 sulfite reductase [NADPH] flavoprotein alpha-component 441181 cysJ 6986468 cysJ Aliivibrio salmonicida LFI1238 sulfite reductase [NADPH] flavoprotein alpha-component YP_002261931.1 439340 D 316275 CDS YP_002261932.1 209694004 6988378 441181..442911 1 NC_011312.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 442911 cysI 6988378 cysI Aliivibrio salmonicida LFI1238 sulfite reductase subunit beta YP_002261932.1 441181 D 316275 CDS YP_002261933.1 209694005 6988377 442904..443665 1 NC_011312.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 443665 cysH 6988377 cysH Aliivibrio salmonicida LFI1238 phosphoadenosine phosphosulfate reductase YP_002261933.1 442904 D 316275 CDS YP_002261934.1 209694006 6988376 complement(443742..444215) 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 444215 6988376 VSAL_I0405 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261934.1 443742 R 316275 CDS YP_002261935.1 209694007 6986469 complement(444332..444952) 1 NC_011312.1 FKBP-type peptidyl-prolyl cis-trans isomerase 444952 fklB 6986469 fklB Aliivibrio salmonicida LFI1238 FKBP-type peptidyl-prolyl cis-trans isomerase YP_002261935.1 444332 R 316275 CDS YP_002261936.1 209694008 6988499 445092..445754 1 NC_011312.1 opacity-associated protein A 445754 6988499 VSAL_I0407 Aliivibrio salmonicida LFI1238 opacity-associated protein A YP_002261936.1 445092 D 316275 CDS YP_002261937.1 209694009 6986470 complement(445766..446635) 1 NC_011312.1 integral membrane protein 446635 6986470 VSAL_I0408 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002261937.1 445766 R 316275 CDS YP_002261938.1 209694010 6986471 complement(446635..447087) 1 NC_011312.1 acetyltransferase 447087 6986471 VSAL_I0409 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002261938.1 446635 R 316275 CDS YP_002261939.1 209694011 6986472 complement(447153..447725) 1 NC_011312.1 DNA-binding protein 447725 6986472 VSAL_I0410 Aliivibrio salmonicida LFI1238 DNA-binding protein YP_002261939.1 447153 R 316275 CDS YP_002261940.1 209694012 6986473 complement(447735..449507) 1 NC_011312.1 hemolysin 449507 6986473 VSAL_I0411 Aliivibrio salmonicida LFI1238 hemolysin YP_002261940.1 447735 R 316275 CDS YP_002261941.1 209694013 6986474 complement(449511..449969) 1 NC_011312.1 membrane protein 449969 6986474 VSAL_I0412 Aliivibrio salmonicida LFI1238 membrane protein YP_002261941.1 449511 R 316275 CDS YP_002261942.1 209694014 6986475 complement(450040..450465) 1 NC_011312.1 hypothetical protein 450465 6986475 VSAL_I0413 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261942.1 450040 R 316275 CDS YP_002261943.1 209694015 6986476 complement(450478..451224) 1 NC_011312.1 hypothetical protein 451224 6986476 VSAL_I0414 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261943.1 450478 R 316275 CDS YP_002261944.1 209694016 6986477 complement(451224..451832) 1 NC_011312.1 hypothetical protein 451832 6986477 VSAL_I0415 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261944.1 451224 R 316275 CDS YP_002261945.1 209694017 6986478 complement(451784..452914) 1 NC_011312.1 hypothetical protein 452914 6986478 VSAL_I0416 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261945.1 451784 R 316275 CDS YP_002261946.1 209694018 6986479 complement(452914..453504) 1 NC_011312.1 membrane protein 453504 6986479 VSAL_I0417 Aliivibrio salmonicida LFI1238 membrane protein YP_002261946.1 452914 R 316275 CDS YP_002261947.1 209694019 6986480 453631..454044 1 NC_011312.1 membrane protein 454044 6986480 VSAL_I0418 Aliivibrio salmonicida LFI1238 membrane protein YP_002261947.1 453631 D 316275 CDS YP_002261948.1 209694020 6986481 complement(454084..456066) 1 NC_011312.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 456066 cpdB 6986481 cpdB Aliivibrio salmonicida LFI1238 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein YP_002261948.1 454084 R 316275 CDS YP_002261949.1 209694021 6988346 456434..457342 1 NC_011312.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 457342 cysD 6988346 cysD Aliivibrio salmonicida LFI1238 sulfate adenylyltransferase subunit 2 YP_002261949.1 456434 D 316275 CDS YP_002261950.1 209694022 6988373 457371..458807 1 NC_011312.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 458807 cysN 6988373 cysN Aliivibrio salmonicida LFI1238 sulfate adenylyltransferase subunit 1 YP_002261950.1 457371 D 316275 CDS YP_002261951.1 209694023 6988380 458830..460557 1 NC_011312.1 ion transporter superfamily protein 460557 6988380 VSAL_I0422 Aliivibrio salmonicida LFI1238 ion transporter superfamily protein YP_002261951.1 458830 D 316275 CDS YP_002261952.1 209694024 6986482 460572..461204 1 NC_011312.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 461204 cysC 6986482 cysC Aliivibrio salmonicida LFI1238 adenylylsulfate kinase YP_002261952.1 460572 D 316275 CDS YP_002261953.1 209694025 6988372 complement(461248..462144) 1 NC_011312.1 hypothetical protein 462144 6988372 VSAL_I0424 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261953.1 461248 R 316275 CDS YP_002261954.1 209694026 6986483 complement(462468..462953) 1 NC_011312.1 hypothetical protein 462953 6986483 VSAL_I0425 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261954.1 462468 R 316275 CDS YP_002261955.1 209694027 6986484 complement(462963..464222) 1 NC_011312.1 permease 464222 6986484 VSAL_I0426 Aliivibrio salmonicida LFI1238 permease YP_002261955.1 462963 R 316275 CDS YP_002261956.1 209694028 6986485 complement(464216..464905) 1 NC_011312.1 ABC transporter ATP-binding protein 464905 6986485 VSAL_I0427 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002261956.1 464216 R 316275 CDS YP_002261957.1 209694029 6986486 complement(464942..465583) 1 NC_011312.1 hypothetical protein 465583 6986486 VSAL_I0428 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261957.1 464942 R 316275 CDS YP_002261958.1 209694030 6986487 complement(465635..465925) 1 NC_011312.1 membrane protein 465925 6986487 VSAL_I0429 Aliivibrio salmonicida LFI1238 membrane protein YP_002261958.1 465635 R 316275 CDS YP_002261959.1 209694031 6986488 complement(465991..466542) 1 NC_011312.1 hypothetical protein 466542 6986488 VSAL_I0430 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261959.1 465991 R 316275 CDS YP_002261960.1 209694032 6986489 466791..467000 1 NC_011312.1 Expression may be stress-induced; hypothetical protein 467000 6986489 VSAL_I0431 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261960.1 466791 D 316275 CDS YP_002261961.1 209694033 6986490 complement(467069..467719) 1 NC_011312.1 peptide methionine sulfoxide reductase MSRA 467719 msrA 6986490 msrA Aliivibrio salmonicida LFI1238 peptide methionine sulfoxide reductase MSRA YP_002261961.1 467069 R 316275 CDS YP_002261962.1 209694034 6988852 467761..469482 1 NC_011312.1 surface antigen protein 469482 6988852 VSAL_I0433 Aliivibrio salmonicida LFI1238 surface antigen protein YP_002261962.1 467761 D 316275 CDS YP_002261963.1 209694035 6986491 469479..473276 1 NC_011312.1 Similar to Vibrio fischeri Hypothetical outer membrane protein UniProt:Q5E818 (1266 aa) fasta scores: E()=0, 72.874% id in 1176 aa; hypothetical protein 473276 6986491 VSAL_I0434 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261963.1 469479 D 316275 CDS YP_002261964.1 209694036 6988102 484735..485046 1 NC_011312.1 transposase 485046 6988102 VSAL_I0435 Aliivibrio salmonicida LFI1238 transposase YP_002261964.1 484735 D 316275 CDS YP_002261965.1 209694037 6986493 485043..485390 1 NC_011312.1 transposase 485390 6986493 VSAL_I0436 Aliivibrio salmonicida LFI1238 transposase YP_002261965.1 485043 D 316275 CDS YP_002261966.1 209694038 6986494 485462..486949 1 NC_011312.1 transposase 486949 6986494 VSAL_I0437 Aliivibrio salmonicida LFI1238 transposase YP_002261966.1 485462 D 316275 CDS YP_002261967.1 209694039 6986496 488216..488527 1 NC_011312.1 transposase 488527 6986496 VSAL_I0439 Aliivibrio salmonicida LFI1238 transposase YP_002261967.1 488216 D 316275 CDS YP_002261968.1 209694040 6986497 488524..489393 1 NC_011312.1 CDS contanins a rare Leucine start codon (TTA); transposase 489393 6986497 VSAL_I0440 Aliivibrio salmonicida LFI1238 transposase YP_002261968.1 488524 D 316275 CDS YP_002261969.1 209694041 6986498 complement(489668..490945) 1 NC_011312.1 sodium/proton antiporter 490945 6986498 VSAL_I0441 Aliivibrio salmonicida LFI1238 sodium/proton antiporter YP_002261969.1 489668 R 316275 CDS YP_002261970.1 209694042 6986499 491126..494806 1 NC_011312.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 494806 metH 6986499 metH Aliivibrio salmonicida LFI1238 B12-dependent methionine synthase YP_002261970.1 491126 D 316275 CDS YP_002261971.1 209694043 6988770 complement(495249..496130) 1 NC_011312.1 transposase 496130 6988770 VSAL_I0444 Aliivibrio salmonicida LFI1238 transposase YP_002261971.1 495249 R 316275 CDS YP_002261972.1 209694044 6988103 497687..498796 1 NC_011312.1 aminotransferase class-V 498796 6988103 VSAL_I0445 Aliivibrio salmonicida LFI1238 aminotransferase class-V YP_002261972.1 497687 D 316275 CDS YP_002261973.1 209694045 6986501 complement(498845..500602) 1 NC_011312.1 O-antigen polymerase 500602 6986501 VSAL_I0446 Aliivibrio salmonicida LFI1238 O-antigen polymerase YP_002261973.1 498845 R 316275 CDS YP_002261974.1 209694046 6986502 complement(500682..503510) 1 NC_011312.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 503510 uvrA 6986502 uvrA Aliivibrio salmonicida LFI1238 excinuclease ABC subunit A YP_002261974.1 500682 R 316275 CDS YP_002261975.1 209694047 6989365 complement(503682..504551) 1 NC_011312.1 UTP-glucose-1-phosphate uridylyltransferase 504551 galU 6989365 galU Aliivibrio salmonicida LFI1238 UTP-glucose-1-phosphate uridylyltransferase YP_002261975.1 503682 R 316275 CDS YP_002261976.1 209694048 6988582 complement(504688..505092) 1 NC_011312.1 hypothetical protein 505092 6988582 VSAL_I0449 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261976.1 504688 R 316275 CDS YP_002261977.1 209694049 6986503 complement(505085..506215) 1 NC_011312.1 glycosyl transferase family protein 506215 6986503 VSAL_I0450 Aliivibrio salmonicida LFI1238 glycosyl transferase family protein YP_002261977.1 505085 R 316275 CDS YP_002261978.1 209694050 6986504 complement(506219..507424) 1 NC_011312.1 glycosyl transferase family protein 507424 6986504 VSAL_I0451 Aliivibrio salmonicida LFI1238 glycosyl transferase family protein YP_002261978.1 506219 R 316275 CDS YP_002261979.1 209694051 6986505 complement(507421..508419) 1 NC_011312.1 glycosyl transferase family protein 508419 6986505 VSAL_I0452 Aliivibrio salmonicida LFI1238 glycosyl transferase family protein YP_002261979.1 507421 R 316275 CDS YP_002261980.1 209694052 6986506 complement(508412..509794) 1 NC_011312.1 membrane protein 509794 6986506 VSAL_I0453 Aliivibrio salmonicida LFI1238 membrane protein YP_002261980.1 508412 R 316275 CDS YP_002261981.1 209694053 6986507 complement(509794..510999) 1 NC_011312.1 membrane protein 510999 6986507 VSAL_I0454 Aliivibrio salmonicida LFI1238 membrane protein YP_002261981.1 509794 R 316275 CDS YP_002261982.1 209694054 6986508 complement(512441..513007) 1 NC_011312.1 transposase 513007 6986508 VSAL_I0456 Aliivibrio salmonicida LFI1238 transposase YP_002261982.1 512441 R 316275 CDS YP_002261983.1 209694055 6986509 complement(513025..513447) 1 NC_011312.1 transposase 513447 6986509 VSAL_I0457 Aliivibrio salmonicida LFI1238 transposase YP_002261983.1 513025 R 316275 CDS YP_002261984.1 209694056 6986510 complement(514317..514898) 1 NC_011312.1 polysaccharide biosynthesis/export protein 514898 6986510 VSAL_I0458 Aliivibrio salmonicida LFI1238 polysaccharide biosynthesis/export protein YP_002261984.1 514317 R 316275 CDS YP_002261985.1 209694057 6986511 complement(514899..516215) 1 NC_011312.1 Weakly similar to Vibrio parahaemolyticus CPS biosynthesis protein CpsB UniProt:Q847V4 (402 aa) fasta scores: E()=2e-14, 24.936% id in 393 aa; hypothetical protein 516215 6986511 VSAL_I0459 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002261985.1 514899 R 316275 CDS YP_002261986.1 209694058 6989416 517928..518479 1 NC_011312.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 518479 ssb 6989416 ssb Aliivibrio salmonicida LFI1238 single-stranded DNA-binding protein YP_002261986.1 517928 D 316275 CDS YP_002261987.1 209694059 6989259 complement(518552..519181) 1 NC_011312.1 membrane protein 519181 6989259 VSAL_I0462 Aliivibrio salmonicida LFI1238 membrane protein YP_002261987.1 518552 R 316275 CDS YP_002261988.1 209694060 6986513 complement(519233..519799) 1 NC_011312.1 transposase 519799 6986513 VSAL_I0463 Aliivibrio salmonicida LFI1238 transposase YP_002261988.1 519233 R 316275 CDS YP_002261989.1 209694061 6986514 complement(519817..520239) 1 NC_011312.1 transposase 520239 6986514 VSAL_I0464 Aliivibrio salmonicida LFI1238 transposase YP_002261989.1 519817 R 316275 CDS YP_002261990.1 209694062 6986515 520546..522531 1 NC_011312.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 522531 6986515 VSAL_I0465 Aliivibrio salmonicida LFI1238 regulatory protein CsrD YP_002261990.1 520546 D 316275 CDS YP_002261991.1 209694063 6986516 522657..524120 1 NC_011312.1 type IV pilus, mannose-sensitive hemagglutinin D (MSHI) 524120 mshI 6986516 mshI Aliivibrio salmonicida LFI1238 type IV pilus, mannose-sensitive hemagglutinin D (MSHI) YP_002261991.1 522657 D 316275 CDS YP_002261992.1 209694064 6988845 524113..524751 1 NC_011312.1 type IV pilus, mannose-sensitive hemagglutinin D (MSHJ) 524751 mshJ 6988845 mshJ Aliivibrio salmonicida LFI1238 type IV pilus, mannose-sensitive hemagglutinin D (MSHJ) YP_002261992.1 524113 D 316275 CDS YP_002261993.1 209694065 6988846 524753..525094 1 NC_011312.1 type IV pilus, mannose-sensitive hemagglutinin D (MSHK) 525094 mshK 6988846 mshK Aliivibrio salmonicida LFI1238 type IV pilus, mannose-sensitive hemagglutinin D (MSHK) YP_002261993.1 524753 D 316275 CDS YP_002261994.1 209694066 6988847 525107..526747 1 NC_011312.1 type IV pilus, mannose-sensitive hemagglutinin D (MSHD) 526747 mshD 6988847 mshD Aliivibrio salmonicida LFI1238 type IV pilus, mannose-sensitive hemagglutinin D (MSHD) YP_002261994.1 525107 D 316275 CDS YP_002261995.1 209694067 6988840 526758..527606 1 NC_011312.1 type IV pilus, mannose-sensitive hemagglutinin D (MSHM) 527606 mshM 6988840 mshM Aliivibrio salmonicida LFI1238 type IV pilus, mannose-sensitive hemagglutinin D (MSHM) YP_002261995.1 526758 D 316275 CDS YP_002261996.1 209694068 6988848 527603..528676 1 NC_011312.1 type IV pilus, mannose-sensitive hemagglutinin D (MSHN) 528676 mshN 6988848 mshN Aliivibrio salmonicida LFI1238 type IV pilus, mannose-sensitive hemagglutinin D (MSHN) YP_002261996.1 527603 D 316275 CDS YP_002261997.1 209694069 6988842 530410..531636 1 NC_011312.1 type IV pilus, mannose-sensitive hemagglutinin protein 531636 mshG 6988842 mshG Aliivibrio salmonicida LFI1238 type IV pilus, mannose-sensitive hemagglutinin protein YP_002261997.1 530410 D 316275 CDS YP_002261998.1 209694070 6988844 531636..532088 1 NC_011312.1 type IV pilus, mannose-sensitive hemagglutinin protein MshF 532088 mshF 6988844 mshF Aliivibrio salmonicida LFI1238 type IV pilus, mannose-sensitive hemagglutinin protein MshF YP_002261998.1 531636 D 316275 CDS YP_002261999.1 209694071 6988843 532170..532739 1 NC_011312.1 type IV pilus, prepilin-like protein (MSHB) 532739 mshB 6988843 mshB Aliivibrio salmonicida LFI1238 type IV pilus, prepilin-like protein (MSHB) YP_002261999.1 532170 D 316275 CDS YP_002262000.1 209694072 6988838 532892..533365 1 NC_011312.1 Expression may be regulated by Fur; type IV pilus, mannose-sensitive hemagglutinin A 533365 mshA 6988838 mshA Aliivibrio salmonicida LFI1238 type IV pilus, mannose-sensitive hemagglutinin A YP_002262000.1 532892 D 316275 CDS YP_002262001.1 209694073 6988836 533617..534087 1 NC_011312.1 duplicate of TVS0304; type IV pilus, mannose-sensitive hemagglutinin A 534087 mshA 6988836 mshA Aliivibrio salmonicida LFI1238 type IV pilus, mannose-sensitive hemagglutinin A YP_002262001.1 533617 D 316275 CDS YP_002262002.1 209694074 6988837 534214..534828 1 NC_011312.1 type IV pilus, prepilin-like protein (MSHC) 534828 mshC 6988837 mshC Aliivibrio salmonicida LFI1238 type IV pilus, prepilin-like protein (MSHC) YP_002262002.1 534214 D 316275 CDS YP_002262003.1 209694075 6988839 534825..535418 1 NC_011312.1 type IV pilus, prepilin-like protein (MSHD) 535418 mshD 6988839 mshD Aliivibrio salmonicida LFI1238 type IV pilus, prepilin-like protein (MSHD) YP_002262003.1 534825 D 316275 CDS YP_002262004.1 209694076 6988841 535418..536173 1 NC_011312.1 Weakly similar to Vibrio cholerae Hypothetical protein MshO UniProt:Q9ZA95 (256 aa) fasta scores: E()=2e-14, 28.846% id in 260 aa; protein MshO 536173 mshO 6988841 mshO Aliivibrio salmonicida LFI1238 protein MshO YP_002262004.1 535418 D 316275 CDS YP_002262005.1 209694077 6988850 536163..536597 1 NC_011312.1 Weakly similar to Vibrio cholerae MshP UniProt:Q9ZA94 (141 aa) fasta scores: E()=0.017, 28.676% id in 136 aa; protein MshP 536597 mshP 6988850 mshP Aliivibrio salmonicida LFI1238 protein MshP YP_002262005.1 536163 D 316275 CDS YP_002262006.1 209694078 6988851 541014..542057 1 NC_011312.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 542057 mreB 6988851 mreB Aliivibrio salmonicida LFI1238 rod shape-determining protein MreB YP_002262006.1 541014 D 316275 CDS YP_002262007.1 209694079 6988832 542080..542937 1 NC_011312.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 542937 mreC 6988832 mreC Aliivibrio salmonicida LFI1238 rod shape-determining protein MreC YP_002262007.1 542080 D 316275 CDS YP_002262008.1 209694080 6988833 542927..543418 1 NC_011312.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 543418 mreD 6988833 mreD Aliivibrio salmonicida LFI1238 rod shape-determining protein MreD YP_002262008.1 542927 D 316275 CDS YP_002262009.1 209694081 6988834 543428..544003 1 NC_011312.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 544003 6988834 VSAL_I0486 Aliivibrio salmonicida LFI1238 Maf-like protein YP_002262009.1 543428 D 316275 CDS YP_002262010.1 209694082 6986517 544023..545492 1 NC_011312.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 545492 cafA 6986517 cafA Aliivibrio salmonicida LFI1238 ribonuclease G YP_002262010.1 544023 D 316275 CDS YP_002262011.1 209694083 6988298 545504..549367 1 NC_011312.1 hypothetical protein 549367 6988298 VSAL_I0488 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262011.1 545504 D 316275 CDS YP_002262012.1 209694084 6986518 549469..550233 1 NC_011312.1 carbon-nitrogen hydrolase 550233 6986518 VSAL_I0489 Aliivibrio salmonicida LFI1238 carbon-nitrogen hydrolase YP_002262012.1 549469 D 316275 CDS YP_002262013.1 209694085 6986519 550344..551789 1 NC_011312.1 protein TldD 551789 tldD 6986519 tldD Aliivibrio salmonicida LFI1238 protein TldD YP_002262013.1 550344 D 316275 CDS YP_002262014.1 209694086 6989300 complement(551887..552426) 1 NC_011312.1 hypothetical protein 552426 6989300 VSAL_I0491 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262014.1 551887 R 316275 CDS YP_002262015.1 209694087 6986520 552536..553879 1 NC_011312.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 553879 pmbA 6986520 pmbA Aliivibrio salmonicida LFI1238 peptidase PmbA YP_002262015.1 552536 D 316275 CDS YP_002262016.1 209694088 6988990 complement(553963..555318) 1 NC_011312.1 magnesium transporter 555318 6988990 VSAL_I0493 Aliivibrio salmonicida LFI1238 magnesium transporter YP_002262016.1 553963 R 316275 CDS YP_002262017.1 209694089 6986521 complement(555630..555908) 1 NC_011312.1 phosphocarrier protein NPr 555908 ptsO 6986521 ptsO Aliivibrio salmonicida LFI1238 phosphocarrier protein NPr YP_002262017.1 555630 R 316275 CDS YP_002262018.1 209694090 6989032 complement(555911..556765) 1 NC_011312.1 hypothetical protein 556765 6989032 VSAL_I0495 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262018.1 555911 R 316275 CDS YP_002262019.1 209694091 6986522 complement(556789..557235) 1 NC_011312.1 nitrogen regulatory IIA protein, PTS system 557235 ptsN 6986522 ptsN Aliivibrio salmonicida LFI1238 nitrogen regulatory IIA protein, PTS system YP_002262019.1 556789 R 316275 CDS YP_002262020.1 209694092 6989031 complement(557237..557524) 1 NC_011312.1 sigma-54 modulation protein 557524 6989031 VSAL_I0497 Aliivibrio salmonicida LFI1238 sigma-54 modulation protein YP_002262020.1 557237 R 316275 CDS YP_002262021.1 209694093 6986523 complement(557544..559013) 1 NC_011312.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 559013 rpoN 6986523 rpoN Aliivibrio salmonicida LFI1238 RNA polymerase factor sigma-54 YP_002262021.1 557544 R 316275 CDS YP_002262022.1 209694094 6989185 complement(559040..559765) 1 NC_011312.1 ABC transporter ATP-binding protein 559765 6989185 VSAL_I0499 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002262022.1 559040 R 316275 CDS YP_002262023.1 209694095 6986524 complement(559768..560268) 1 NC_011312.1 hypothetical protein 560268 6986524 VSAL_I0500 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262023.1 559768 R 316275 CDS YP_002262024.1 209694096 6986525 complement(560249..560812) 1 NC_011312.1 hypothetical protein 560812 6986525 VSAL_I0501 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262024.1 560249 R 316275 CDS YP_002262025.1 209694097 6986526 complement(560809..561366) 1 NC_011312.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 561366 kdsC 6986526 kdsC Aliivibrio salmonicida LFI1238 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_002262025.1 560809 R 316275 CDS YP_002262026.1 209694098 6988734 complement(561366..562340) 1 NC_011312.1 arabinose 5-phosphate isomerase 562340 kdsD 6988734 kdsD Aliivibrio salmonicida LFI1238 arabinose 5-phosphate isomerase YP_002262026.1 561366 R 316275 CDS YP_002262027.1 209694099 6988735 complement(562544..563512) 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein YrbG UniProt:P45394 (325 aa) fasta scores: E()=9e-44,44.688% id in 320 aa; sodium/calcium exchanger protein 563512 6988735 VSAL_I0504 Aliivibrio salmonicida LFI1238 sodium/calcium exchanger protein YP_002262027.1 562544 R 316275 CDS YP_002262028.1 209694100 6986527 563711..564517 1 NC_011312.1 toluene tolerance protein Ttg2A 564517 6986527 VSAL_I0505 Aliivibrio salmonicida LFI1238 toluene tolerance protein Ttg2A YP_002262028.1 563711 D 316275 CDS YP_002262029.1 209694101 6986528 564510..565304 1 NC_011312.1 toluene tolerance protein Ttg2B 565304 6986528 VSAL_I0506 Aliivibrio salmonicida LFI1238 toluene tolerance protein Ttg2B YP_002262029.1 564510 D 316275 CDS YP_002262030.1 209694102 6986529 565307..565801 1 NC_011312.1 toluene tolerance protein Ttg2C 565801 6986529 VSAL_I0507 Aliivibrio salmonicida LFI1238 toluene tolerance protein Ttg2C YP_002262030.1 565307 D 316275 CDS YP_002262031.1 209694103 6986530 565801..566442 1 NC_011312.1 toluene tolerance protein Ttg2 566442 6986530 VSAL_I0508 Aliivibrio salmonicida LFI1238 toluene tolerance protein Ttg2 YP_002262031.1 565801 D 316275 CDS YP_002262032.1 209694104 6986531 566442..566762 1 NC_011312.1 hypothetical protein 566762 6986531 VSAL_I0509 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262032.1 566442 D 316275 CDS YP_002262033.1 209694105 6986532 566762..567019 1 NC_011312.1 hypothetical protein 567019 6986532 VSAL_I0510 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262033.1 566762 D 316275 CDS YP_002262034.1 209694106 6986533 567032..568300 1 NC_011312.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 568300 murA 6986533 murA Aliivibrio salmonicida LFI1238 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002262034.1 567032 D 316275 CDS YP_002262035.1 209694107 6988858 568435..569160 1 NC_011312.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 569160 plsC 6988858 plsC Aliivibrio salmonicida LFI1238 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002262035.1 568435 D 316275 CDS YP_002262036.1 209694108 6986534 complement(571115..571462) 1 NC_011312.1 transposase 571462 6986534 VSAL_I0515 Aliivibrio salmonicida LFI1238 transposase YP_002262036.1 571115 R 316275 CDS YP_002262037.1 209694109 6988201 complement(571459..571728) 1 NC_011312.1 transposase 571728 6988201 VSAL_I0516 Aliivibrio salmonicida LFI1238 transposase YP_002262037.1 571459 R 316275 CDS YP_002262038.1 209694110 6986535 complement(572099..572488) 1 NC_011312.1 endoribonuclease L-PSP 572488 6986535 VSAL_I0517 Aliivibrio salmonicida LFI1238 endoribonuclease L-PSP YP_002262038.1 572099 R 316275 CDS YP_002262039.1 209694111 6986536 complement(572628..573092) 1 NC_011312.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 573092 pyrI 6986536 pyrI Aliivibrio salmonicida LFI1238 aspartate carbamoyltransferase regulatory subunit YP_002262039.1 572628 R 316275 CDS YP_002262040.1 209694112 6989054 complement(573106..574035) 1 NC_011312.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 574035 pyrB 6989054 pyrB Aliivibrio salmonicida LFI1238 aspartate carbamoyltransferase catalytic subunit YP_002262040.1 573106 R 316275 CDS YP_002262041.1 209694113 6989048 complement(574311..575315) 1 NC_011312.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 575315 argI 6989048 argI Aliivibrio salmonicida LFI1238 ornithine carbamoyltransferase YP_002262041.1 574311 R 316275 CDS YP_002262042.1 209694114 6988255 complement(575411..576631) 1 NC_011312.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 576631 arcA 6988255 arcA Aliivibrio salmonicida LFI1238 arginine deiminase YP_002262042.1 575411 R 316275 CDS YP_002262043.1 209694115 6988245 576784..577200 1 NC_011312.1 hypothetical protein 577200 6988245 VSAL_I0522 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262043.1 576784 D 316275 CDS YP_002262044.1 209694116 6986537 577288..578124 1 NC_011312.1 hypothetical protein 578124 6986537 VSAL_I0523 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262044.1 577288 D 316275 CDS YP_002262045.1 209694117 6986538 complement(578281..581142) 1 NC_011312.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 581142 valS 6986538 valS Aliivibrio salmonicida LFI1238 valyl-tRNA synthetase YP_002262045.1 578281 R 316275 CDS YP_002262046.1 209694118 6989370 complement(581253..581696) 1 NC_011312.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 581696 holC 6989370 holC Aliivibrio salmonicida LFI1238 DNA polymerase III subunit chi YP_002262046.1 581253 R 316275 CDS YP_002262047.1 209694119 6988676 complement(581790..583298) 1 NC_011312.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 583298 pepA 6988676 pepA Aliivibrio salmonicida LFI1238 leucyl aminopeptidase YP_002262047.1 581790 R 316275 CDS YP_002262048.1 209694120 6988957 583488..584600 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein YjgP UniProt:P0AF98 (366 aa) fasta scores: E()=2.7e-54,43.443% id in 366 aa; permease 584600 6988957 VSAL_I0527 Aliivibrio salmonicida LFI1238 permease YP_002262048.1 583488 D 316275 CDS YP_002262049.1 209694121 6986539 584593..585669 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein YjgQ UniProt:P0ADC6 (360 aa) fasta scores: E()=2.6e-66,51.685% id in 356 aa; permease 585669 6986539 VSAL_I0528 Aliivibrio salmonicida LFI1238 permease YP_002262049.1 584593 D 316275 CDS YP_002262050.1 209694122 6986540 complement(585746..586222) 1 NC_011312.1 membrane protein 586222 6986540 VSAL_I0529 Aliivibrio salmonicida LFI1238 membrane protein YP_002262050.1 585746 R 316275 CDS YP_002262051.1 209694123 6988104 complement(586622..586879) 1 NC_011312.1 hypothetical protein 586879 6988104 VSAL_I0530 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262051.1 586622 R 316275 CDS YP_002262052.1 209694124 6986542 complement(586955..587341) 1 NC_011312.1 diacylglycerol kinase 587341 dgkA 6986542 dgkA Aliivibrio salmonicida LFI1238 diacylglycerol kinase YP_002262052.1 586955 R 316275 CDS YP_002262053.1 209694125 6988111 complement(588313..589449) 1 NC_011312.1 membrane-bound lytic murein transglycosylase C 589449 mltC 6988111 mltC Aliivibrio salmonicida LFI1238 membrane-bound lytic murein transglycosylase C YP_002262053.1 588313 R 316275 CDS YP_002262054.1 209694126 6988810 complement(589560..589832) 1 NC_011312.1 hypothetical protein 589832 yggX 6988810 yggX Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262054.1 589560 R 316275 CDS YP_002262055.1 209694127 6989435 complement(589835..590887) 1 NC_011312.1 A/G-specific adenine glycosylase 590887 mutY 6989435 mutY Aliivibrio salmonicida LFI1238 A/G-specific adenine glycosylase YP_002262055.1 589835 R 316275 CDS YP_002262056.1 209694128 6988872 591105..591821 1 NC_011312.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 591821 trmB 6988872 trmB Aliivibrio salmonicida LFI1238 tRNA (guanine-N(7)-)-methyltransferase YP_002262056.1 591105 D 316275 CDS YP_002262057.1 209694129 6989321 591928..592848 1 NC_011312.1 catalyzes the formation of glutamate from glutamine; glutaminase 592848 glsA 6989321 glsA Aliivibrio salmonicida LFI1238 glutaminase YP_002262057.1 591928 D 316275 CDS YP_002262058.1 209694130 6988604 complement(592953..594113) 1 NC_011312.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 594113 yggW 6988604 yggW Aliivibrio salmonicida LFI1238 coproporphyrinogen III oxidase YP_002262058.1 592953 R 316275 CDS YP_002262059.1 209694131 6989434 complement(594117..594713) 1 NC_011312.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 594713 6989434 VSAL_I0538 Aliivibrio salmonicida LFI1238 deoxyribonucleotide triphosphate pyrophosphatase YP_002262059.1 594117 R 316275 CDS YP_002262060.1 209694132 6986543 complement(594724..595155) 1 NC_011312.1 hypothetical protein 595155 6986543 VSAL_I0539 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262060.1 594724 R 316275 CDS YP_002262061.1 209694133 6986544 complement(595227..595478) 1 NC_011312.1 hypothetical protein 595478 6986544 VSAL_I0540 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262061.1 595227 R 316275 CDS YP_002262062.1 209694134 6986545 complement(595507..596061) 1 NC_011312.1 membrane protein, related to K+ transport 596061 6986545 VSAL_I0541 Aliivibrio salmonicida LFI1238 membrane protein, related to K+ transport YP_002262062.1 595507 R 316275 CDS YP_002262063.1 209694135 6986546 complement(596137..596955) 1 NC_011312.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 596955 proC 6986546 proC Aliivibrio salmonicida LFI1238 pyrroline-5-carboxylate reductase YP_002262063.1 596137 R 316275 CDS YP_002262064.1 209694136 6989013 complement(596942..597709) 1 NC_011312.1 membrane protein, related to K+ transport 597709 6989013 VSAL_I0543 Aliivibrio salmonicida LFI1238 membrane protein, related to K+ transport YP_002262064.1 596942 R 316275 CDS YP_002262065.1 209694137 6986547 597733..598770 1 NC_011312.1 twitching mobility protein PilT, type II/IV secretion system protein 598770 pilT 6986547 pilT Aliivibrio salmonicida LFI1238 twitching mobility protein PilT, type II/IV secretion system protein YP_002262065.1 597733 D 316275 CDS YP_002262066.1 209694138 6988985 598773..599879 1 NC_011312.1 twitching motility protein PilU, type II/IV secretion system protein 599879 pilU 6988985 pilU Aliivibrio salmonicida LFI1238 twitching motility protein PilU, type II/IV secretion system protein YP_002262066.1 598773 D 316275 CDS YP_002262067.1 209694139 6988986 complement(599983..600408) 1 NC_011312.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 600408 yqgF 6988986 yqgF Aliivibrio salmonicida LFI1238 Holliday junction resolvase-like protein YP_002262067.1 599983 R 316275 CDS YP_002262068.1 209694140 6989438 complement(600405..600968) 1 NC_011312.1 hypothetical protein 600968 6989438 VSAL_I0547 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262068.1 600405 R 316275 CDS YP_002262069.1 209694141 6986548 complement(601042..602028) 1 NC_011312.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 602028 gshB 6986548 gshB Aliivibrio salmonicida LFI1238 glutathione synthetase YP_002262069.1 601042 R 316275 CDS YP_002262070.1 209694142 6988631 complement(602012..602743) 1 NC_011312.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 602743 6988631 VSAL_I0549 Aliivibrio salmonicida LFI1238 16S ribosomal RNA methyltransferase RsmE YP_002262070.1 602012 R 316275 CDS YP_002262071.1 209694143 6986549 complement(602822..603535) 1 NC_011312.1 endonuclease I 603535 6986549 VSAL_I0550 Aliivibrio salmonicida LFI1238 endonuclease I YP_002262071.1 602822 R 316275 CDS YP_002262072.1 209694144 6986550 complement(603626..604111) 1 NC_011312.1 Similar to Escherichia coli Protein SprT UniProt:P39902 (165 aa) fasta scores: E()=5.2e-31, 51.634% id in 153 aa; hypothetical protein 604111 6986550 VSAL_I0551 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262072.1 603626 R 316275 CDS YP_002262073.1 209694145 6986551 complement(604227..605381) 1 NC_011312.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 605381 metK 6986551 metK Aliivibrio salmonicida LFI1238 S-adenosylmethionine synthetase YP_002262073.1 604227 R 316275 CDS YP_002262074.1 209694146 6988797 complement(605512..605667) 1 NC_011312.1 hypothetical protein 605667 6988797 VSAL_I0553 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262074.1 605512 R 316275 CDS YP_002262075.1 209694147 6986552 605768..607765 1 NC_011312.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 607765 tktA 6986552 tktA Aliivibrio salmonicida LFI1238 transketolase YP_002262075.1 605768 D 316275 CDS YP_002262076.1 209694148 6989299 607905..608924 1 NC_011312.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 608924 epd 6989299 epd Aliivibrio salmonicida LFI1238 erythrose 4-phosphate dehydrogenase YP_002262076.1 607905 D 316275 CDS YP_002262077.1 209694149 6988444 609091..610254 1 NC_011312.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 610254 pgk 6988444 pgk Aliivibrio salmonicida LFI1238 phosphoglycerate kinase YP_002262077.1 609091 D 316275 CDS YP_002262078.1 209694150 6988965 610409..611485 1 NC_011312.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 611485 fbaA 6988965 fbaA Aliivibrio salmonicida LFI1238 fructose-bisphosphate aldolase YP_002262078.1 610409 D 316275 CDS YP_002262079.1 209694151 6988480 complement(611726..612976) 1 NC_011312.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 612976 srmB 6988480 srmB Aliivibrio salmonicida LFI1238 ATP-dependent RNA helicase SrmB YP_002262079.1 611726 R 316275 CDS YP_002262080.1 209694152 6989257 complement(613065..613769) 1 NC_011312.1 hypothetical protein 613769 6989257 VSAL_I0559 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262080.1 613065 R 316275 CDS YP_002262081.1 209694153 6986553 614058..615371 1 NC_011312.1 branched chain amino acid transport system II carrier protein 615371 6986553 VSAL_I0560 Aliivibrio salmonicida LFI1238 branched chain amino acid transport system II carrier protein YP_002262081.1 614058 D 316275 CDS YP_002262082.1 209694154 6986554 complement(615500..616018) 1 NC_011312.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 616018 fldB 6986554 fldB Aliivibrio salmonicida LFI1238 flavodoxin FldB YP_002262082.1 615500 R 316275 CDS YP_002262083.1 209694155 6988515 616155..617057 1 NC_011312.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 617057 xerD 6988515 xerD Aliivibrio salmonicida LFI1238 site-specific tyrosine recombinase XerD YP_002262083.1 616155 D 316275 CDS YP_002262084.1 209694156 6989419 617137..617913 1 NC_011312.1 thiol/disulfide interchange protein DsbC precursor 617913 dsbC 6989419 dsbC Aliivibrio salmonicida LFI1238 thiol/disulfide interchange protein DsbC precursor YP_002262084.1 617137 D 316275 CDS YP_002262085.1 209694157 6988425 617993..619732 1 NC_011312.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 619732 recJ 6988425 recJ Aliivibrio salmonicida LFI1238 ssDNA exonuclease RecJ YP_002262085.1 617993 D 316275 CDS YP_002262086.1 209694158 6989004 621111..622616 1 NC_011312.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 622616 lysS 6989004 lysS Aliivibrio salmonicida LFI1238 lysyl-tRNA synthetase YP_002262086.1 621111 D 316275 CDS YP_002262087.1 209694159 6988772 623013..624350 1 NC_011312.1 Similar to Escherichia coli Transcriptional regulatory protein ZraR UniProt:P14375 (441 aa) fasta scores: E()=2.5e-36, 34.197% id in 386 aa; sigma-54 interacting regulatory protein 624350 6988772 VSAL_I0567 Aliivibrio salmonicida LFI1238 sigma-54 interacting regulatory protein YP_002262087.1 623013 D 316275 CDS YP_002262088.1 209694160 6986555 complement(624417..625085) 1 NC_011312.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 625085 mutH 6986555 mutH Aliivibrio salmonicida LFI1238 DNA mismatch repair protein YP_002262088.1 624417 R 316275 CDS YP_002262089.1 209694161 6988866 625679..626191 1 NC_011312.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 626191 nudH 6988866 nudH Aliivibrio salmonicida LFI1238 dinucleoside polyphosphate hydrolase YP_002262089.1 625679 D 316275 CDS YP_002262090.1 209694162 6988924 626228..628489 1 NC_011312.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 628489 ptsP 6988924 ptsP Aliivibrio salmonicida LFI1238 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain YP_002262090.1 626228 D 316275 CDS YP_002262091.1 209694163 6989033 628490..629293 1 NC_011312.1 integral membrane protein 629293 6989033 VSAL_I0571 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002262091.1 628490 D 316275 CDS YP_002262092.1 209694164 6986556 629304..630155 1 NC_011312.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 630155 lgt 6986556 lgt Aliivibrio salmonicida LFI1238 prolipoprotein diacylglyceryl transferase YP_002262092.1 629304 D 316275 CDS YP_002262093.1 209694165 6988750 630234..631091 1 NC_011312.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 631091 thyA 6988750 thyA Aliivibrio salmonicida LFI1238 thymidylate synthase YP_002262093.1 630234 D 316275 CDS YP_002262094.1 209694166 6989296 complement(631160..632305) 1 NC_011312.1 sodium-dependent phosphate pump 632305 nptA 6989296 nptA Aliivibrio salmonicida LFI1238 sodium-dependent phosphate pump YP_002262094.1 631160 R 316275 CDS YP_002262095.1 209694167 6988906 632642..633583 1 NC_011312.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 633583 nhaR 6988906 nhaR Aliivibrio salmonicida LFI1238 transcriptional activator NhaR YP_002262095.1 632642 D 316275 CDS YP_002262096.1 209694168 6988896 633619..633930 1 NC_011312.1 transcriptional activator HlyU 633930 hlyU 6988896 hlyU Aliivibrio salmonicida LFI1238 transcriptional activator HlyU YP_002262096.1 633619 D 316275 CDS YP_002262097.1 209694169 6988673 complement(634052..634312) 1 NC_011312.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 634312 rpsT 6988673 rpsT Aliivibrio salmonicida LFI1238 30S ribosomal protein S20 YP_002262097.1 634052 R 316275 CDS YP_002262098.1 209694170 6989207 634534..636093 1 NC_011312.1 virulence factor MviN-like protein 636093 mviN 6989207 mviN Aliivibrio salmonicida LFI1238 virulence factor MviN-like protein YP_002262098.1 634534 D 316275 CDS YP_002262099.1 209694171 6988873 636184..637116 1 NC_011312.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 637116 ribF 6988873 ribF Aliivibrio salmonicida LFI1238 bifunctional riboflavin kinase/FMN adenylyltransferase YP_002262099.1 636184 D 316275 CDS YP_002262100.1 209694172 6989100 637153..640011 1 NC_011312.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 640011 ileS 6989100 ileS Aliivibrio salmonicida LFI1238 isoleucyl-tRNA synthetase YP_002262100.1 637153 D 316275 CDS YP_002262101.1 209694173 6988704 640011..640526 1 NC_011312.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 640526 lspA 6988704 lspA Aliivibrio salmonicida LFI1238 lipoprotein signal peptidase YP_002262101.1 640011 D 316275 CDS YP_002262102.1 209694174 6988763 640621..641052 1 NC_011312.1 FkbP-type 16 kDa peptidyl-prolyl cis-trans isomerase 641052 fkpB 6988763 fkpB Aliivibrio salmonicida LFI1238 FkbP-type 16 kDa peptidyl-prolyl cis-trans isomerase YP_002262102.1 640621 D 316275 CDS YP_002262103.1 209694175 6988501 641077..642021 1 NC_011312.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 642021 ispH 6988501 ispH Aliivibrio salmonicida LFI1238 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_002262103.1 641077 D 316275 CDS YP_002262104.1 209694176 6988729 642091..642900 1 NC_011312.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 642900 dapB 6988729 dapB Aliivibrio salmonicida LFI1238 dihydrodipicolinate reductase YP_002262104.1 642091 D 316275 CDS YP_002262105.1 209694177 6988389 643459..644613 1 NC_011312.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 644613 carA 6988389 carA Aliivibrio salmonicida LFI1238 carbamoyl phosphate synthase small subunit YP_002262105.1 643459 D 316275 CDS YP_002262106.1 209694178 6988302 644631..647861 1 NC_011312.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 647861 carB 6988302 carB Aliivibrio salmonicida LFI1238 carbamoyl phosphate synthase large subunit YP_002262106.1 644631 D 316275 CDS YP_002262107.1 209694179 6988303 complement(647963..649372) 1 NC_011312.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 649372 dacB 6988303 dacB Aliivibrio salmonicida LFI1238 D-alanyl-D-alanine carboxypeptidase YP_002262107.1 647963 R 316275 CDS YP_002262108.1 209694180 6988386 complement(649514..650515) 1 NC_011312.1 In Vibrio anguillarum OmpU limits the progression of biofilm formation outside of the fish host.; major outer membrane protein OmpU 650515 ompU 6988386 ompU Aliivibrio salmonicida LFI1238 major outer membrane protein OmpU YP_002262108.1 649514 R 316275 CDS YP_002262109.1 209694181 6988931 651098..651571 1 NC_011312.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 651571 greA 6988931 greA Aliivibrio salmonicida LFI1238 transcription elongation factor GreA YP_002262109.1 651098 D 316275 CDS YP_002262110.1 209694182 6988623 complement(651666..651962) 1 NC_011312.1 RNA-binding protein 651962 6988623 VSAL_I0590 Aliivibrio salmonicida LFI1238 RNA-binding protein YP_002262110.1 651666 R 316275 CDS YP_002262111.1 209694183 6986557 652081..652710 1 NC_011312.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 652710 rrmJ 6986557 rrmJ Aliivibrio salmonicida LFI1238 23S rRNA methyltransferase J YP_002262111.1 652081 D 316275 CDS YP_002262112.1 209694184 6989210 652796..654778 1 NC_011312.1 cell division protein FtsH 654778 hflB 6989210 hflB Aliivibrio salmonicida LFI1238 cell division protein FtsH YP_002262112.1 652796 D 316275 CDS YP_002262113.1 209694185 6988653 654843..655676 1 NC_011312.1 dihydropteroate synthase 655676 folP 6988653 folP Aliivibrio salmonicida LFI1238 dihydropteroate synthase YP_002262113.1 654843 D 316275 CDS YP_002262114.1 209694186 6988558 655733..657070 1 NC_011312.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 657070 glmM 6988558 glmM Aliivibrio salmonicida LFI1238 phosphoglucosamine mutase YP_002262114.1 655733 D 316275 CDS YP_002262115.1 209694187 6988590 657222..657554 1 NC_011312.1 preprotein translocase subunit SecG 657554 secG 6988590 secG Aliivibrio salmonicida LFI1238 preprotein translocase subunit SecG YP_002262115.1 657222 D 316275 CDS YP_002262116.1 209694188 6988113 657962..658417 1 NC_011312.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 658417 6988113 VSAL_I0596 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262116.1 657962 D 316275 CDS YP_002262117.1 209694189 6986558 658434..659921 1 NC_011312.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 659921 nusA 6986558 nusA Aliivibrio salmonicida LFI1238 transcription elongation factor NusA YP_002262117.1 658434 D 316275 CDS YP_002262118.1 209694190 6988925 659945..662620 1 NC_011312.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 662620 infB 6988925 infB Aliivibrio salmonicida LFI1238 translation initiation factor IF-2 YP_002262118.1 659945 D 316275 CDS YP_002262119.1 209694191 6986559 662734..663141 1 NC_011312.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 663141 rbfA 6986559 rbfA Aliivibrio salmonicida LFI1238 ribosome-binding factor A YP_002262119.1 662734 D 316275 CDS YP_002262120.1 209694192 6989065 663141..664097 1 NC_011312.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 664097 truB 6989065 truB Aliivibrio salmonicida LFI1238 tRNA pseudouridine synthase B YP_002262120.1 663141 D 316275 CDS YP_002262121.1 209694193 6988114 664260..664529 1 NC_011312.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 664529 rpsO 6988114 rpsO Aliivibrio salmonicida LFI1238 30S ribosomal protein S15 YP_002262121.1 664260 D 316275 CDS YP_002262122.1 209694194 6989202 664832..666988 1 NC_011312.1 polynucleotide phosphorylase/polyadenylase 666988 pnp 6989202 pnp Aliivibrio salmonicida LFI1238 polynucleotide phosphorylase/polyadenylase YP_002262122.1 664832 D 316275 CDS YP_002262123.1 209694195 6988991 667099..668082 1 NC_011312.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 668082 nlpI 6988991 nlpI Aliivibrio salmonicida LFI1238 lipoprotein NlpI YP_002262123.1 667099 D 316275 CDS YP_002262124.1 209694196 6988899 complement(668165..669043) 1 NC_011312.1 peptidase 669043 6988899 VSAL_I0604 Aliivibrio salmonicida LFI1238 peptidase YP_002262124.1 668165 R 316275 CDS YP_002262125.1 209694197 6986560 complement(669053..670054) 1 NC_011312.1 peptidase 670054 6986560 VSAL_I0605 Aliivibrio salmonicida LFI1238 peptidase YP_002262125.1 669053 R 316275 CDS YP_002262126.1 209694198 6986561 complement(670270..672309) 1 NC_011312.1 signaling protein 672309 6986561 VSAL_I0606 Aliivibrio salmonicida LFI1238 signaling protein YP_002262126.1 670270 R 316275 CDS YP_002262127.1 209694199 6986562 672524..673042 1 NC_011312.1 hypothetical protein 673042 6986562 VSAL_I0607 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262127.1 672524 D 316275 CDS YP_002262128.1 209694200 6986563 673032..673535 1 NC_011312.1 acetyltransferase 673535 6986563 VSAL_I0608 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002262128.1 673032 D 316275 CDS YP_002262129.1 209694201 6986564 673678..673836 1 NC_011312.1 hypothetical protein 673836 6986564 VSAL_I0609 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262129.1 673678 D 316275 CDS YP_002262130.1 209694202 6986565 complement(673857..674105) 1 NC_011312.1 Doubtful CDS, poor translational start site. No significant database matches to the full length CDS; hypothetical protein 674105 6986565 VSAL_I0610 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262130.1 673857 R 316275 CDS YP_002262131.1 209694203 6986566 674232..674633 1 NC_011312.1 DNA polymerase III subunit psi 674633 6986566 VSAL_I0611 Aliivibrio salmonicida LFI1238 DNA polymerase III subunit psi YP_002262131.1 674232 D 316275 CDS YP_002262132.1 209694204 6986567 674623..675069 1 NC_011312.1 ribosomal-protein-alanine acetyltransferase 675069 rimI 6986567 rimI Aliivibrio salmonicida LFI1238 ribosomal-protein-alanine acetyltransferase YP_002262132.1 674623 D 316275 CDS YP_002262133.1 209694205 6989103 675187..676767 1 NC_011312.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 676767 prfC 6989103 prfC Aliivibrio salmonicida LFI1238 peptide chain release factor 3 YP_002262133.1 675187 D 316275 CDS YP_002262134.1 209694206 6989005 676846..676992 1 NC_011312.1 hypothetical protein 676992 6989005 VSAL_I0614 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262134.1 676846 D 316275 CDS YP_002262135.1 209694207 6986568 676973..677749 1 NC_011312.1 DNase 677749 6986568 VSAL_I0615 Aliivibrio salmonicida LFI1238 DNase YP_002262135.1 676973 D 316275 CDS YP_002262136.1 209694208 6986569 677973..679256 1 NC_011312.1 sodium-dependent nucleoside transporter protein 679256 6986569 VSAL_I0616 Aliivibrio salmonicida LFI1238 sodium-dependent nucleoside transporter protein YP_002262136.1 677973 D 316275 CDS YP_002262137.1 209694209 6986570 679393..680700 1 NC_011312.1 transposase 680700 6986570 VSAL_I0617 Aliivibrio salmonicida LFI1238 transposase YP_002262137.1 679393 D 316275 CDS YP_002262138.1 209694210 6986571 681014..681223 1 NC_011312.1 Expression may be stress-induced; hypothetical protein 681223 6986571 VSAL_I0618 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262138.1 681014 D 316275 CDS YP_002262139.1 209694211 6986572 681508..682284 1 NC_011312.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 682284 deoC 6986572 deoC Aliivibrio salmonicida LFI1238 deoxyribose-phosphate aldolase YP_002262139.1 681508 D 316275 CDS YP_002262140.1 209694212 6988403 682400..683731 1 NC_011312.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 683731 deoA 6988403 deoA Aliivibrio salmonicida LFI1238 thymidine phosphorylase YP_002262140.1 682400 D 316275 CDS YP_002262141.1 209694213 6988401 683742..684962 1 NC_011312.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 684962 deoB 6988401 deoB Aliivibrio salmonicida LFI1238 phosphopentomutase YP_002262141.1 683742 D 316275 CDS YP_002262142.1 209694214 6988404 complement(685836..686435) 1 NC_011312.1 peripheral membrane protein 686435 smp 6988404 smp Aliivibrio salmonicida LFI1238 peripheral membrane protein YP_002262142.1 685836 R 316275 CDS YP_002262143.1 209694215 6989250 686566..687534 1 NC_011312.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 687534 serB 6989250 serB Aliivibrio salmonicida LFI1238 phosphoserine phosphatase YP_002262143.1 686566 D 316275 CDS YP_002262144.1 209694216 6989240 complement(687588..689933) 1 NC_011312.1 May be involved in signalling; hypothetical protein 689933 6989240 VSAL_I0625 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262144.1 687588 R 316275 CDS YP_002262145.1 209694217 6986573 690051..691430 1 NC_011312.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 691430 radA 6986573 radA Aliivibrio salmonicida LFI1238 DNA repair protein RadA YP_002262145.1 690051 D 316275 CDS YP_002262146.1 209694218 6989060 691624..693708 1 NC_011312.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 693708 fusA 6989060 fusA Aliivibrio salmonicida LFI1238 elongation factor G YP_002262146.1 691624 D 316275 CDS YP_002262147.1 209694219 6988578 complement(693819..694052) 1 NC_011312.1 hypothetical protein 694052 6988578 VSAL_I0628 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262147.1 693819 R 316275 CDS YP_002262148.1 209694220 6986574 complement(694165..695442) 1 NC_011312.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 695442 codA 6986574 codA Aliivibrio salmonicida LFI1238 cytosine deaminase YP_002262148.1 694165 R 316275 CDS YP_002262149.1 209694221 6988343 complement(695453..696706) 1 NC_011312.1 cytosine permease 696706 codB 6988343 codB Aliivibrio salmonicida LFI1238 cytosine permease YP_002262149.1 695453 R 316275 CDS YP_002262150.1 209694222 6988344 complement(697136..698812) 1 NC_011312.1 AMP-binding acetyl-CoA synthetase 698812 6988344 VSAL_I0631 Aliivibrio salmonicida LFI1238 AMP-binding acetyl-CoA synthetase YP_002262150.1 697136 R 316275 CDS YP_002262151.1 209694223 6986575 complement(699029..701596) 1 NC_011312.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 701596 mutS 6986575 mutS Aliivibrio salmonicida LFI1238 DNA mismatch repair protein MutS YP_002262151.1 699029 R 316275 CDS YP_002262152.1 209694224 6988870 701705..702202 1 NC_011312.1 competence-damaged protein 702202 6988870 VSAL_I0633 Aliivibrio salmonicida LFI1238 competence-damaged protein YP_002262152.1 701705 D 316275 CDS YP_002262153.1 209694225 6986576 702343..703386 1 NC_011312.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 703386 recA 6986576 recA Aliivibrio salmonicida LFI1238 recombinase A YP_002262153.1 702343 D 316275 CDS YP_002262154.1 209694226 6989075 703629..706211 1 NC_011312.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 706211 alaS 6989075 alaS Aliivibrio salmonicida LFI1238 alanyl-tRNA synthetase YP_002262154.1 703629 D 316275 CDS YP_002262155.1 209694227 6988230 706221..707390 1 NC_011312.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 707390 lysC 6988230 lysC Aliivibrio salmonicida LFI1238 aspartate kinase YP_002262155.1 706221 D 316275 CDS YP_002262156.1 209694228 6988771 707472..707672 1 NC_011312.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 707672 csrA 6988771 csrA Aliivibrio salmonicida LFI1238 carbon storage regulator YP_002262156.1 707472 D 316275 CDS YP_002262157.1 209694229 6988122 709310..709561 1 NC_011312.1 oxaloacetate decarboxylase subunit gamma 709561 6988122 VSAL_I0638 Aliivibrio salmonicida LFI1238 oxaloacetate decarboxylase subunit gamma YP_002262157.1 709310 D 316275 CDS YP_002262158.1 209694230 6986577 709599..711386 1 NC_011312.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 711386 6986577 VSAL_I0639 Aliivibrio salmonicida LFI1238 oxaloacetate decarboxylase YP_002262158.1 709599 D 316275 CDS YP_002262159.1 209694231 6986578 711398..712528 1 NC_011312.1 oxaloacetate decarboxylase subunit beta 712528 6986578 VSAL_I0640 Aliivibrio salmonicida LFI1238 oxaloacetate decarboxylase subunit beta YP_002262159.1 711398 D 316275 CDS YP_002262160.1 209694232 6986579 712625..713056 1 NC_011312.1 hypothetical protein 713056 6986579 VSAL_I0641 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262160.1 712625 D 316275 CDS YP_002262161.1 209694233 6986580 713065..715917 1 NC_011312.1 pepdidase, zinc protease 715917 6986580 VSAL_I0642 Aliivibrio salmonicida LFI1238 pepdidase, zinc protease YP_002262161.1 713065 D 316275 CDS YP_002262162.1 209694234 6986581 716044..717609 1 NC_011312.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 717609 gshA 6986581 gshA Aliivibrio salmonicida LFI1238 glutamate--cysteine ligase YP_002262162.1 716044 D 316275 CDS YP_002262163.1 209694235 6988630 717676..718275 1 NC_011312.1 lipoprotein 718275 6988630 VSAL_I0644 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262163.1 717676 D 316275 CDS YP_002262164.1 209694236 6986582 718309..718827 1 NC_011312.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 718827 luxS 6986582 luxS Aliivibrio salmonicida LFI1238 S-ribosylhomocysteinase YP_002262164.1 718309 D 316275 CDS YP_002262165.1 209694237 6988767 complement(718895..720166) 1 NC_011312.1 transporter 720166 6988767 VSAL_I0646 Aliivibrio salmonicida LFI1238 transporter YP_002262165.1 718895 R 316275 CDS YP_002262166.1 209694238 6986583 complement(720268..721062) 1 NC_011312.1 hypothetical protein 721062 6986583 VSAL_I0647 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262166.1 720268 R 316275 CDS YP_002262167.1 209694239 6986584 721225..722610 1 NC_011312.1 signal recognition particle protein 722610 ffh 6986584 ffh Aliivibrio salmonicida LFI1238 signal recognition particle protein YP_002262167.1 721225 D 316275 CDS YP_002262168.1 209694240 6988494 722830..723120 1 NC_011312.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 723120 rpsP 6988494 rpsP Aliivibrio salmonicida LFI1238 30S ribosomal protein S16 YP_002262168.1 722830 D 316275 CDS YP_002262169.1 209694241 6989203 723147..723674 1 NC_011312.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 723674 rimM 6989203 rimM Aliivibrio salmonicida LFI1238 16S rRNA-processing protein RimM YP_002262169.1 723147 D 316275 CDS YP_002262170.1 209694242 6989106 723697..724446 1 NC_011312.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 724446 trmD 6989106 trmD Aliivibrio salmonicida LFI1238 tRNA (guanine-N(1)-)-methyltransferase YP_002262170.1 723697 D 316275 CDS YP_002262171.1 209694243 6989322 724487..724840 1 NC_011312.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 724840 rplS 6989322 rplS Aliivibrio salmonicida LFI1238 50S ribosomal protein L19 YP_002262171.1 724487 D 316275 CDS YP_002262172.1 209694244 6989162 725054..726127 1 NC_011312.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 726127 aroF 6989162 aroF Aliivibrio salmonicida LFI1238 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002262172.1 725054 D 316275 CDS YP_002262173.1 209694245 6988262 726134..727267 1 NC_011312.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 727267 tyrA 6988262 tyrA Aliivibrio salmonicida LFI1238 bifunctional chorismate mutase/prephenate dehydrogenase YP_002262173.1 726134 D 316275 CDS YP_002262174.1 209694246 6989344 complement(727315..728328) 1 NC_011312.1 membrane associated metallopeptidases 728328 6989344 VSAL_I0655 Aliivibrio salmonicida LFI1238 membrane associated metallopeptidases YP_002262174.1 727315 R 316275 CDS YP_002262175.1 209694247 6986585 complement(728351..728716) 1 NC_011312.1 signaling protein 728716 6986585 VSAL_I0656 Aliivibrio salmonicida LFI1238 signaling protein YP_002262175.1 728351 R 316275 CDS YP_002262176.1 209694248 6986587 730675..732609 1 NC_011312.1 soluble lytic murein transglycosylase precursor 732609 slt 6986587 slt Aliivibrio salmonicida LFI1238 soluble lytic murein transglycosylase precursor YP_002262176.1 730675 D 316275 CDS YP_002262177.1 209694249 6989247 732680..733006 1 NC_011312.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 733006 trpR 6989247 trpR Aliivibrio salmonicida LFI1238 Trp operon repressor YP_002262177.1 732680 D 316275 CDS YP_002262178.1 209694250 6989333 complement(732975..733496) 1 NC_011312.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 733496 6989333 VSAL_I0660 Aliivibrio salmonicida LFI1238 NTPase YP_002262178.1 732975 R 316275 CDS YP_002262179.1 209694251 6986588 complement(733504..734679) 1 NC_011312.1 P-protein (includes: chorismate mutase and prephenate dehydratase) 734679 pheA 6986588 pheA Aliivibrio salmonicida LFI1238 P-protein (includes: chorismate mutase and prephenate dehydratase) YP_002262179.1 733504 R 316275 CDS YP_002262180.1 209694252 6988969 complement(734792..735154) 1 NC_011312.1 ribosome-associated inhibitor A 735154 raiA 6988969 raiA Aliivibrio salmonicida LFI1238 ribosome-associated inhibitor A YP_002262180.1 734792 R 316275 CDS YP_002262181.1 209694253 6989062 complement(735514..736281) 1 NC_011312.1 outer membrane protein 736281 6989062 VSAL_I0663 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002262181.1 735514 R 316275 CDS YP_002262182.1 209694254 6986589 736402..737376 1 NC_011312.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 737376 rluD 6986589 rluD Aliivibrio salmonicida LFI1238 23S rRNA pseudouridine synthase D YP_002262182.1 736402 D 316275 CDS YP_002262183.1 209694255 6989111 737376..738110 1 NC_011312.1 hypothetical protein 738110 6989111 VSAL_I0665 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262183.1 737376 D 316275 CDS YP_002262184.1 209694256 6986590 738205..740790 1 NC_011312.1 chaperone ClpB (heat-shock protein) 740790 clpB 6986590 clpB Aliivibrio salmonicida LFI1238 chaperone ClpB (heat-shock protein) YP_002262184.1 738205 D 316275 CDS YP_002262185.1 209694257 6988128 complement(746868..747275) 1 NC_011312.1 hypothetical protein 747275 6988128 VSAL_I0667 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262185.1 746868 R 316275 CDS YP_002262186.1 209694258 6986591 complement(747265..748509) 1 NC_011312.1 hypothetical protein 748509 6986591 VSAL_I0668 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262186.1 747265 R 316275 CDS YP_002262187.1 209694259 6986592 complement(748509..749141) 1 NC_011312.1 hypothetical protein 749141 6986592 VSAL_I0669 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262187.1 748509 R 316275 CDS YP_002262188.1 209694260 6986593 complement(749107..749622) 1 NC_011312.1 Similar to Pseudomonas aeruginosa Type 4 fimbrial biogenesis protein FimU UniProt:Q59652 (168 aa) fasta scores: E()=5.2e-05, 31.447% id in 159 aa; hypothetical protein 749622 6986593 VSAL_I0670 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262188.1 749107 R 316275 CDS YP_002262189.1 209694261 6986594 749726..750157 1 NC_011312.1 Similar to Pseudomonas aeruginosa Type 4 fimbrial biogenesis protein PilE UniProt:Q60148 (141 aa) fasta scores: E()=4.6e-08, 32.168% id in 143 aa; hypothetical protein 750157 6986594 VSAL_I0671 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262189.1 749726 D 316275 CDS YP_002262190.1 209694262 6986595 complement(750194..751345) 1 NC_011312.1 chromate transporter 751345 6986595 VSAL_I0672 Aliivibrio salmonicida LFI1238 chromate transporter YP_002262190.1 750194 R 316275 CDS YP_002262191.1 209694263 6986597 complement(752403..752591) 1 NC_011312.1 hypothetical protein 752591 6986597 VSAL_I0674 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262191.1 752403 R 316275 CDS YP_002262192.1 209694264 6986598 complement(752758..753810) 1 NC_011312.1 Large N-terminal truncation of around 110 amino acid residues compared with the Corynebacterium glutamicum orthologue; tetrahydrodipicolinate succinylase 753810 dapD 6986598 dapD Aliivibrio salmonicida LFI1238 tetrahydrodipicolinate succinylase YP_002262192.1 752758 R 316275 CDS YP_002262193.1 209694265 6988390 complement(754187..754477) 1 NC_011312.1 hypothetical protein 754477 6988390 VSAL_I0676 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262193.1 754187 R 316275 CDS YP_002262194.1 209694266 6986599 754689..755327 1 NC_011312.1 hypothetical protein 755327 6986599 VSAL_I0677 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262194.1 754689 D 316275 CDS YP_002262195.1 209694267 6986600 complement(755360..756235) 1 NC_011312.1 LysR family transcriptional regulator 756235 6986600 VSAL_I0678 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262195.1 755360 R 316275 CDS YP_002262196.1 209694268 6986601 756371..757360 1 NC_011312.1 C4-dicarboxylate/malic acid transport protein 757360 6986601 VSAL_I0679 Aliivibrio salmonicida LFI1238 C4-dicarboxylate/malic acid transport protein YP_002262196.1 756371 D 316275 CDS YP_002262197.1 209694269 6986602 757441..760824 1 NC_011312.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 760824 recC 6986602 recC Aliivibrio salmonicida LFI1238 exonuclease V subunit gamma YP_002262197.1 757441 D 316275 CDS YP_002262198.1 209694270 6989077 761158..764784 1 NC_011312.1 exodeoxyribonuclease V subunit beta 764784 recB 6989077 recB Aliivibrio salmonicida LFI1238 exodeoxyribonuclease V subunit beta YP_002262198.1 761158 D 316275 CDS YP_002262199.1 209694271 6989076 764777..766801 1 NC_011312.1 CDS contains additional 60 internal amino acid residues in comparison to the E.coli orthologue; exodeoxyribonuclease V subunit alpha 766801 recD 6989076 recD Aliivibrio salmonicida LFI1238 exodeoxyribonuclease V subunit alpha YP_002262199.1 764777 D 316275 CDS YP_002262200.1 209694272 6989078 complement(767012..768346) 1 NC_011312.1 anaerobic c4-dicarboxylate transporter DcuB 768346 dcuB 6989078 dcuB Aliivibrio salmonicida LFI1238 anaerobic c4-dicarboxylate transporter DcuB YP_002262200.1 767012 R 316275 CDS YP_002262201.1 209694273 6988395 complement(768445..769827) 1 NC_011312.1 argininosuccinate lyase 769827 argH 6988395 argH Aliivibrio salmonicida LFI1238 argininosuccinate lyase YP_002262201.1 768445 R 316275 CDS YP_002262202.1 209694274 6988253 complement(770708..772057) 1 NC_011312.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 772057 argA 6988253 argA Aliivibrio salmonicida LFI1238 N-acetylglutamate synthase YP_002262202.1 770708 R 316275 CDS YP_002262203.1 209694275 6988248 772199..772585 1 NC_011312.1 Possible alternative translational start site after codon 1; hypothetical protein 772585 6988248 VSAL_I0686 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262203.1 772199 D 316275 CDS YP_002262204.1 209694276 6986603 772764..773864 1 NC_011312.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 773864 mltA 6986603 mltA Aliivibrio salmonicida LFI1238 murein transglycosylase A YP_002262204.1 772764 D 316275 CDS YP_002262205.1 209694277 6988809 773959..774774 1 NC_011312.1 hypothetical protein 774774 6988809 VSAL_I0688 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262205.1 773959 D 316275 CDS YP_002262206.1 209694278 6986604 complement(774899..775336) 1 NC_011312.1 Similar to Escherichia coli ygdk SufE-like protein YgdK. Members of the YgdK/SufE protein family are enhancers of cysteine desulfurases; conserved hypothetical protein, SufE-related protein 775336 6986604 VSAL_I0689 Aliivibrio salmonicida LFI1238 conserved hypothetical protein, SufE-related protein YP_002262206.1 774899 R 316275 CDS YP_002262207.1 209694279 6986605 complement(775361..776578) 1 NC_011312.1 cysteine desulfurase 776578 sufS 6986605 sufS Aliivibrio salmonicida LFI1238 cysteine desulfurase YP_002262207.1 775361 R 316275 CDS YP_002262208.1 209694280 6989267 776939..777847 1 NC_011312.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 777847 gcvA 6989267 gcvA Aliivibrio salmonicida LFI1238 DNA-binding transcriptional activator GcvA YP_002262208.1 776939 D 316275 CDS YP_002262209.1 209694281 6988586 777840..778226 1 NC_011312.1 membrane protein 778226 6988586 VSAL_I0692 Aliivibrio salmonicida LFI1238 membrane protein YP_002262209.1 777840 D 316275 CDS YP_002262210.1 209694282 6986606 778223..779314 1 NC_011312.1 RNA 2'-O-ribose methyltransferase 779314 mtfA 6986606 mtfA Aliivibrio salmonicida LFI1238 RNA 2'-O-ribose methyltransferase YP_002262210.1 778223 D 316275 CDS YP_002262211.1 209694283 6988853 complement(779521..780294) 1 NC_011312.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 780294 xni 6988853 xni Aliivibrio salmonicida LFI1238 exonuclease IX YP_002262211.1 779521 R 316275 CDS YP_002262212.1 209694284 6988461 complement(780377..781735) 1 NC_011312.1 hypothetical protein 781735 6988461 VSAL_I0695 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262212.1 780377 R 316275 CDS YP_002262213.1 209694285 6986607 complement(781864..783426) 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 783426 6986607 VSAL_I0696 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262213.1 781864 R 316275 CDS YP_002262214.1 209694286 6986608 complement(783603..785834) 1 NC_011312.1 hypothetical protein 785834 6986608 VSAL_I0697 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262214.1 783603 R 316275 CDS YP_002262215.1 209694287 6986609 complement(785945..786790) 1 NC_011312.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 786790 queF 6986609 queF Aliivibrio salmonicida LFI1238 7-cyano-7-deazaguanine reductase YP_002262215.1 785945 R 316275 CDS YP_002262216.1 209694288 6989059 786899..787447 1 NC_011312.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 787447 syd 6989059 syd Aliivibrio salmonicida LFI1238 SecY interacting protein Syd YP_002262216.1 786899 D 316275 CDS YP_002262217.1 209694289 6989271 787551..788324 1 NC_011312.1 hypothetical protein 788324 6989271 VSAL_I0700 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262217.1 787551 D 316275 CDS YP_002262218.1 209694290 6986610 complement(788386..788841) 1 NC_011312.1 hypothetical protein 788841 6986610 VSAL_I0701 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262218.1 788386 R 316275 CDS YP_002262219.1 209694291 6986611 complement(788841..789110) 1 NC_011312.1 hypothetical protein 789110 6986611 VSAL_I0702 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262219.1 788841 R 316275 CDS YP_002262220.1 209694292 6988358 790040..791326 1 NC_011312.1 Possible alternative translational start site after codon 7; PTS system, cellobiose permease IIC component 791326 6988358 VSAL_I0703 Aliivibrio salmonicida LFI1238 PTS system, cellobiose permease IIC component YP_002262220.1 790040 D 316275 CDS YP_002262221.1 209694293 6986613 791444..791749 1 NC_011312.1 PTS system, cellobiose-specific component IIB 791749 bglE 6986613 bglE Aliivibrio salmonicida LFI1238 PTS system, cellobiose-specific component IIB YP_002262221.1 791444 D 316275 CDS YP_002262222.1 209694294 6988289 791836..793245 1 NC_011312.1 6-phospho-beta-glucosidase 793245 pbgA 6988289 pbgA Aliivibrio salmonicida LFI1238 6-phospho-beta-glucosidase YP_002262222.1 791836 D 316275 CDS YP_002262223.1 209694295 6988948 793275..794210 1 NC_011312.1 glucokinase 794210 6988948 VSAL_I0706 Aliivibrio salmonicida LFI1238 glucokinase YP_002262223.1 793275 D 316275 CDS YP_002262224.1 209694296 6986614 794221..794544 1 NC_011312.1 phosphotransferase system (PTS) component IIA 794544 bglI 6986614 bglI Aliivibrio salmonicida LFI1238 phosphotransferase system (PTS) component IIA YP_002262224.1 794221 D 316275 CDS YP_002262225.1 209694297 6988290 794614..795624 1 NC_011312.1 LacI family transcriptional regulator 795624 6988290 VSAL_I0708 Aliivibrio salmonicida LFI1238 LacI family transcriptional regulator YP_002262225.1 794614 D 316275 CDS YP_002262226.1 209694298 6986615 795907..797184 1 NC_011312.1 maltoporin precursor (outer membrane protein S) 797184 lamB 6986615 lamB Aliivibrio salmonicida LFI1238 maltoporin precursor (outer membrane protein S) YP_002262226.1 795907 D 316275 CDS YP_002262227.1 209694299 6988740 complement(797251..797559) 1 NC_011312.1 hypothetical protein 797559 6988740 VSAL_I0710 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262227.1 797251 R 316275 CDS YP_002262228.1 209694300 6986616 complement(797562..798602) 1 NC_011312.1 hypothetical protein 798602 6986616 VSAL_I0711 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262228.1 797562 R 316275 CDS YP_002262229.1 209694301 6986617 798705..799025 1 NC_011312.1 hypothetical protein 799025 6986617 VSAL_I0712 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262229.1 798705 D 316275 CDS YP_002262230.1 209694302 6986618 799022..799813 1 NC_011312.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 799813 truC 6986618 truC Aliivibrio salmonicida LFI1238 tRNA pseudouridine synthase C YP_002262230.1 799022 D 316275 CDS YP_002262231.1 209694303 6989337 complement(799918..800772) 1 NC_011312.1 inositol-1-monophosphatase 800772 suhB 6989337 suhB Aliivibrio salmonicida LFI1238 inositol-1-monophosphatase YP_002262231.1 799918 R 316275 CDS YP_002262232.1 209694304 6989268 800930..801658 1 NC_011312.1 Similar to Escherichia coli Hypothetical tRNA/rRNA methyltransferase YfhQ UniProt:P0AE01 (246 aa) fasta scores: E()=6e-57, 63.934% id in 244 aa; tRNA/rRNA methyltransferase 801658 yfhQ 6989268 yfhQ Aliivibrio salmonicida LFI1238 tRNA/rRNA methyltransferase YP_002262232.1 800930 D 316275 CDS YP_002262233.1 209694305 6989433 801764..802270 1 NC_011312.1 Expression may be stress-induced; HTH-type transcriptional regulator 802270 6989433 VSAL_I0716 Aliivibrio salmonicida LFI1238 HTH-type transcriptional regulator YP_002262233.1 801764 D 316275 CDS YP_002262234.1 209694306 6986619 802296..803516 1 NC_011312.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 803516 iscS 6986619 iscS Aliivibrio salmonicida LFI1238 cysteine desulfurase YP_002262234.1 802296 D 316275 CDS YP_002262235.1 209694307 6988722 803550..803927 1 NC_011312.1 Weakly similar to chain A, solution structure of iron-sulfur cluster assembly protein SufU From Bacillus subtilis (pdb 2AZ) identity=(33, 86); scaffold protein 803927 6988722 VSAL_I0718 Aliivibrio salmonicida LFI1238 scaffold protein YP_002262235.1 803550 D 316275 CDS YP_002262236.1 209694308 6986620 804048..804371 1 NC_011312.1 iron-binding protein IscA (iron-sulfur cluster assembly protein) 804371 iscA 6986620 iscA Aliivibrio salmonicida LFI1238 iron-binding protein IscA (iron-sulfur cluster assembly protein) YP_002262236.1 804048 D 316275 CDS YP_002262237.1 209694309 6988721 804387..804902 1 NC_011312.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 804902 hscB 6988721 hscB Aliivibrio salmonicida LFI1238 co-chaperone HscB YP_002262237.1 804387 D 316275 CDS YP_002262238.1 209694310 6988683 804938..806791 1 NC_011312.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 806791 hscA 6988683 hscA Aliivibrio salmonicida LFI1238 chaperone protein HscA YP_002262238.1 804938 D 316275 CDS YP_002262239.1 209694311 6988682 806794..807132 1 NC_011312.1 2Fe-2S ferredoxin 807132 fdx 6988682 fdx Aliivibrio salmonicida LFI1238 2Fe-2S ferredoxin YP_002262239.1 806794 D 316275 CDS YP_002262240.1 209694312 6988488 807261..807461 1 NC_011312.1 Similar to hypothetical protein yfhJ (PDB 1UJ8). Evalue=6e-20, identity=(38, 62). Member of the ISC machinery of E.coli involved in assembly of iron-sulfur clusters; iron-sulfur cluster assembly protein 807461 6988488 VSAL_I0723 Aliivibrio salmonicida LFI1238 iron-sulfur cluster assembly protein YP_002262240.1 807261 D 316275 CDS YP_002262241.1 209694313 6986621 807699..808985 1 NC_011312.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 808985 pepB 6986621 pepB Aliivibrio salmonicida LFI1238 aminopeptidase B YP_002262241.1 807699 D 316275 CDS YP_002262242.1 209694314 6988958 809074..809508 1 NC_011312.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 809508 ndk 6988958 ndk Aliivibrio salmonicida LFI1238 nucleoside diphosphate kinase YP_002262242.1 809074 D 316275 CDS YP_002262243.1 209694315 6988888 809739..810890 1 NC_011312.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 810890 6988888 VSAL_I0726 Aliivibrio salmonicida LFI1238 ribosomal RNA large subunit methyltransferase N YP_002262243.1 809739 D 316275 CDS YP_002262244.1 209694316 6986622 810887..811648 1 NC_011312.1 type 4 fimbrial biogenesis protein PilF 811648 6986622 VSAL_I0727 Aliivibrio salmonicida LFI1238 type 4 fimbrial biogenesis protein PilF YP_002262244.1 810887 D 316275 CDS YP_002262245.1 209694317 6986623 811638..812528 1 NC_011312.1 hypothetical protein 812528 6986623 VSAL_I0728 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262245.1 811638 D 316275 CDS YP_002262246.1 209694318 6986624 812541..813659 1 NC_011312.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 813659 ispG 6986624 ispG Aliivibrio salmonicida LFI1238 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_002262246.1 812541 D 316275 CDS YP_002262247.1 209694319 6988728 813694..814968 1 NC_011312.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 814968 hisS 6988728 hisS Aliivibrio salmonicida LFI1238 histidyl-tRNA synthetase YP_002262247.1 813694 D 316275 CDS YP_002262248.1 209694320 6988668 814980..815591 1 NC_011312.1 outer membrane protein 815591 6988668 VSAL_I0731 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002262248.1 814980 D 316275 CDS YP_002262249.1 209694321 6986625 815602..816759 1 NC_011312.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 816759 yfgL 6986625 yfgL Aliivibrio salmonicida LFI1238 outer membrane protein assembly complex subunit YfgL YP_002262249.1 815602 D 316275 CDS YP_002262250.1 209694322 6989432 816940..818442 1 NC_011312.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 818442 engA 6989432 engA Aliivibrio salmonicida LFI1238 GTP-binding protein EngA YP_002262250.1 816940 D 316275 CDS YP_002262251.1 209694323 6986626 818497..819372 1 NC_011312.1 hypothetical protein 819372 6986626 VSAL_I0734 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262251.1 818497 D 316275 CDS YP_002262252.1 209694324 6986627 819669..819905 1 NC_011312.1 hypothetical protein 819905 6986627 VSAL_I0735 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262252.1 819669 D 316275 CDS YP_002262253.1 209694325 6986628 complement(819907..821241) 1 NC_011312.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 821241 xseA 6986628 xseA Aliivibrio salmonicida LFI1238 exodeoxyribonuclease VII large subunit YP_002262253.1 819907 R 316275 CDS YP_002262254.1 209694326 6989420 821451..822914 1 NC_011312.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 822914 guaB 6989420 guaB Aliivibrio salmonicida LFI1238 inosine 5'-monophosphate dehydrogenase YP_002262254.1 821451 D 316275 CDS YP_002262255.1 209694327 6988634 823131..824684 1 NC_011312.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 824684 guaA 6988634 guaA Aliivibrio salmonicida LFI1238 GMP synthase YP_002262255.1 823131 D 316275 CDS YP_002262256.1 209694328 6988635 824963..826522 1 NC_011312.1 Expression may be regulated by Fur; ion transporter 826522 6988635 VSAL_I0739 Aliivibrio salmonicida LFI1238 ion transporter YP_002262256.1 824963 D 316275 CDS YP_002262257.1 209694329 6986629 complement(826619..827254) 1 NC_011312.1 DNA-binding protein 827254 6986629 VSAL_I0740 Aliivibrio salmonicida LFI1238 DNA-binding protein YP_002262257.1 826619 R 316275 CDS YP_002262258.1 209694330 6986630 complement(827315..828592) 1 NC_011312.1 hypothetical protein 828592 6986630 VSAL_I0741 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262258.1 827315 R 316275 CDS YP_002262259.1 209694331 6986631 complement(828610..828999) 1 NC_011312.1 endoribonuclease L-PSP 828999 6986631 VSAL_I0742 Aliivibrio salmonicida LFI1238 endoribonuclease L-PSP YP_002262259.1 828610 R 316275 CDS YP_002262260.1 209694332 6989436 complement(830386..831267) 1 NC_011312.1 transposase 831267 6989436 VSAL_I0744 Aliivibrio salmonicida LFI1238 transposase YP_002262260.1 830386 R 316275 CDS YP_002262261.1 209694333 6986633 complement(831701..832543) 1 NC_011312.1 esterase 832543 yeiG 6986633 yeiG Aliivibrio salmonicida LFI1238 esterase YP_002262261.1 831701 R 316275 CDS YP_002262262.1 209694334 6989427 complement(832820..833968) 1 NC_011312.1 Expression may be stress-induced; alcohol dehydrogenase class 3 833968 adhC 6989427 adhC Aliivibrio salmonicida LFI1238 alcohol dehydrogenase class 3 YP_002262262.1 832820 R 316275 CDS YP_002262263.1 209694335 6988223 834157..835029 1 NC_011312.1 Similar to Alcaligenes eutrophus LysR-type Transcriptional Regulator CbnR (PDB 1IXC). Evalue=1e-06,identity=(26, 65); LysR family transcriptional regulator 835029 6988223 VSAL_I0747 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262263.1 834157 D 316275 CDS YP_002262264.1 209694336 6986634 835031..835564 1 NC_011312.1 tRNA-specific adenosine deaminase 835564 tadA 6986634 tadA Aliivibrio salmonicida LFI1238 tRNA-specific adenosine deaminase YP_002262264.1 835031 D 316275 CDS YP_002262265.1 209694337 6989272 complement(835973..837457) 1 NC_011312.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 837457 6989272 VSAL_I0749 Aliivibrio salmonicida LFI1238 transglycosylase YP_002262265.1 835973 R 316275 CDS YP_002262266.1 209694338 6986635 837821..841750 1 NC_011312.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 841750 purL 6986635 purL Aliivibrio salmonicida LFI1238 phosphoribosylformylglycinamidine synthase YP_002262266.1 837821 D 316275 CDS YP_002262267.1 209694339 6989041 841969..842460 1 NC_011312.1 Possible alternative translational start site after codon 7; hypothetical protein 842460 6989041 VSAL_I0751 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262267.1 841969 D 316275 CDS YP_002262268.1 209694340 6986636 842457..842660 1 NC_011312.1 hypothetical protein 842660 6986636 VSAL_I0752 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262268.1 842457 D 316275 CDS YP_002262269.1 209694341 6986637 complement(842678..842953) 1 NC_011312.1 hypothetical protein 842953 6986637 VSAL_I0753 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262269.1 842678 R 316275 CDS YP_002262270.1 209694342 6986638 843130..843645 1 NC_011312.1 rRNA methylase (SpoU_methylase) 843645 6986638 VSAL_I0754 Aliivibrio salmonicida LFI1238 rRNA methylase (SpoU_methylase) YP_002262270.1 843130 D 316275 CDS YP_002262271.1 209694343 6986639 843716..844252 1 NC_011312.1 membrane protein 844252 6986639 VSAL_I0755 Aliivibrio salmonicida LFI1238 membrane protein YP_002262271.1 843716 D 316275 CDS YP_002262272.1 209694344 6986640 844660..844986 1 NC_011312.1 hypothetical protein 844986 6986640 VSAL_I0756 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262272.1 844660 D 316275 CDS YP_002262273.1 209694345 6986641 complement(845055..847595) 1 NC_011312.1 Expression may be regulated by Fur; endochitinase ChiA 847595 chiA 6986641 chiA Aliivibrio salmonicida LFI1238 endochitinase ChiA YP_002262273.1 845055 R 316275 CDS YP_002262274.1 209694346 6988325 847796..848317 1 NC_011312.1 hypothetical protein 848317 6988325 VSAL_I0758 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262274.1 847796 D 316275 CDS YP_002262275.1 209694347 6986642 complement(848387..849481) 1 NC_011312.1 hypothetical protein 849481 6986642 VSAL_I0759 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262275.1 848387 R 316275 CDS YP_002262276.1 209694348 6986643 complement(849441..850346) 1 NC_011312.1 ribosomal protein S6 modification protein 850346 rimK 6986643 rimK Aliivibrio salmonicida LFI1238 ribosomal protein S6 modification protein YP_002262276.1 849441 R 316275 CDS YP_002262277.1 209694349 6989104 complement(850346..850786) 1 NC_011312.1 hypothetical protein 850786 6989104 VSAL_I0761 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262277.1 850346 R 316275 CDS YP_002262278.1 209694350 6986644 851281..852645 1 NC_011312.1 sodium-dependent transporter 852645 6986644 VSAL_I0762 Aliivibrio salmonicida LFI1238 sodium-dependent transporter YP_002262278.1 851281 D 316275 CDS YP_002262279.1 209694351 6986647 complement(855265..855579) 1 NC_011312.1 transposase 855579 6986647 VSAL_I0766 Aliivibrio salmonicida LFI1238 transposase YP_002262279.1 855265 R 316275 CDS YP_002262280.1 209694352 6986649 complement(855807..856337) 1 NC_011312.1 phage protein 856337 6986649 VSAL_I0768 Aliivibrio salmonicida LFI1238 phage protein YP_002262280.1 855807 R 316275 CDS YP_002262281.1 209694353 6986650 complement(856328..856801) 1 NC_011312.1 phage protein 856801 6986650 VSAL_I0769 Aliivibrio salmonicida LFI1238 phage protein YP_002262281.1 856328 R 316275 CDS YP_002262282.1 209694354 6986651 complement(856805..857263) 1 NC_011312.1 phage protein 857263 6986651 VSAL_I0770 Aliivibrio salmonicida LFI1238 phage protein YP_002262282.1 856805 R 316275 CDS YP_002262283.1 209694355 6986652 complement(857360..858394) 1 NC_011312.1 phage major capsid protein 858394 6986652 VSAL_I0771 Aliivibrio salmonicida LFI1238 phage major capsid protein YP_002262283.1 857360 R 316275 CDS YP_002262284.1 209694356 6986653 complement(858446..859318) 1 NC_011312.1 Similar to Bacteriophage HP1 capsid scaffolding protein UniProt:P51719 (298 aa) fasta scores: E()=1e-15, 32.740% id in 281 aa; capsid scaffolding protein 859318 6986653 VSAL_I0772 Aliivibrio salmonicida LFI1238 capsid scaffolding protein YP_002262284.1 858446 R 316275 CDS YP_002262285.1 209694357 6986654 859448..861244 1 NC_011312.1 bacteriophage terminase 861244 6986654 VSAL_I0773 Aliivibrio salmonicida LFI1238 bacteriophage terminase YP_002262285.1 859448 D 316275 CDS YP_002262286.1 209694358 6986656 complement(862454..863467) 1 NC_011312.1 phage protein 863467 6986656 VSAL_I0775 Aliivibrio salmonicida LFI1238 phage protein YP_002262286.1 862454 R 316275 CDS YP_002262287.1 209694359 6986658 complement(864223..864978) 1 NC_011312.1 N-acetylmuramoyl-L-alanine amidase 864978 6986658 VSAL_I0777 Aliivibrio salmonicida LFI1238 N-acetylmuramoyl-L-alanine amidase YP_002262287.1 864223 R 316275 CDS YP_002262288.1 209694360 6986659 complement(865267..865629) 1 NC_011312.1 phage protein 865629 6986659 VSAL_I0778 Aliivibrio salmonicida LFI1238 phage protein YP_002262288.1 865267 R 316275 CDS YP_002262289.1 209694361 6986660 complement(865634..865804) 1 NC_011312.1 membrane protein, phage gene 865804 6986660 VSAL_I0779 Aliivibrio salmonicida LFI1238 membrane protein, phage gene YP_002262289.1 865634 R 316275 CDS YP_002262290.1 209694362 6986661 complement(865839..866237) 1 NC_011312.1 membrane protein, phage gene 866237 6986661 VSAL_I0780 Aliivibrio salmonicida LFI1238 membrane protein, phage gene YP_002262290.1 865839 R 316275 CDS YP_002262291.1 209694363 6986662 866373..866687 1 NC_011312.1 transposase 866687 6986662 VSAL_I0781 Aliivibrio salmonicida LFI1238 transposase YP_002262291.1 866373 D 316275 CDS YP_002262292.1 209694364 6986663 866684..867031 1 NC_011312.1 transposase 867031 6986663 VSAL_I0782 Aliivibrio salmonicida LFI1238 transposase YP_002262292.1 866684 D 316275 CDS YP_002262293.1 209694365 6986664 867103..868590 1 NC_011312.1 transposase 868590 6986664 VSAL_I0783 Aliivibrio salmonicida LFI1238 transposase YP_002262293.1 867103 D 316275 CDS YP_002262294.1 209694366 6988140 complement(870657..871748) 1 NC_011312.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 871748 engD 6988140 engD Aliivibrio salmonicida LFI1238 GTP-dependent nucleic acid-binding protein EngD YP_002262294.1 870657 R 316275 CDS YP_002262295.1 209694367 6988441 complement(871768..872358) 1 NC_011312.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 872358 pth 6988441 pth Aliivibrio salmonicida LFI1238 peptidyl-tRNA hydrolase YP_002262295.1 871768 R 316275 CDS YP_002262296.1 209694368 6989027 complement(872539..873537) 1 NC_011312.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 873537 prs 6989027 prs Aliivibrio salmonicida LFI1238 ribose-phosphate pyrophosphokinase YP_002262296.1 872539 R 316275 CDS YP_002262297.1 209694369 6989016 complement(873525..874391) 1 NC_011312.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 874391 ipk 6989016 ipk Aliivibrio salmonicida LFI1238 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_002262297.1 873525 R 316275 CDS YP_002262298.1 209694370 6988726 complement(874388..874999) 1 NC_011312.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 874999 lolB 6988726 lolB Aliivibrio salmonicida LFI1238 outer membrane lipoprotein LolB YP_002262298.1 874388 R 316275 CDS YP_002262299.1 209694371 6986666 875199..876455 1 NC_011312.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 876455 hemA 6986666 hemA Aliivibrio salmonicida LFI1238 glutamyl-tRNA reductase YP_002262299.1 875199 D 316275 CDS YP_002262300.1 209694372 6988640 876495..877583 1 NC_011312.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 877583 prfA 6988640 prfA Aliivibrio salmonicida LFI1238 peptide chain release factor 1 YP_002262300.1 876495 D 316275 CDS YP_002262301.1 209694373 6989003 877583..878449 1 NC_011312.1 protein methyltransferase HemK 878449 hemK 6989003 hemK Aliivibrio salmonicida LFI1238 protein methyltransferase HemK YP_002262301.1 877583 D 316275 CDS YP_002262302.1 209694374 6988647 878453..878833 1 NC_011312.1 protein SirB, invasion gene expression up-regulator 878833 6988647 VSAL_I0792 Aliivibrio salmonicida LFI1238 protein SirB, invasion gene expression up-regulator YP_002262302.1 878453 D 316275 CDS YP_002262303.1 209694375 6986667 878836..879645 1 NC_011312.1 protein SirB1 879645 6986667 VSAL_I0793 Aliivibrio salmonicida LFI1238 protein SirB1 YP_002262303.1 878836 D 316275 CDS YP_002262304.1 209694376 6986668 879657..880511 1 NC_011312.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 880511 kdsA 6986668 kdsA Aliivibrio salmonicida LFI1238 2-dehydro-3-deoxyphosphooctonate aldolase YP_002262304.1 879657 D 316275 CDS YP_002262305.1 209694377 6988733 complement(880601..881428) 1 NC_011312.1 The CDS appears to be truncated at the N-terminus in comparison to orthologues. Although other vibrio orthologues are found to be of similar size; siroheme synthase 881428 cysG 6988733 cysG Aliivibrio salmonicida LFI1238 siroheme synthase YP_002262305.1 880601 R 316275 CDS YP_002262306.1 209694378 6988375 complement(881524..882336) 1 NC_011312.1 formate/nitrite transporter 882336 6988375 VSAL_I0796 Aliivibrio salmonicida LFI1238 formate/nitrite transporter YP_002262306.1 881524 R 316275 CDS YP_002262307.1 209694379 6986669 complement(882434..882763) 1 NC_011312.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 882763 nirD 6986669 nirD Aliivibrio salmonicida LFI1238 nitrite reductase small subunit YP_002262307.1 882434 R 316275 CDS YP_002262308.1 209694380 6988898 complement(882766..885342) 1 NC_011312.1 nitrite reductase (NAD(P)H) large subunit 885342 nirB 6988898 nirB Aliivibrio salmonicida LFI1238 nitrite reductase (NAD(P)H) large subunit YP_002262308.1 882766 R 316275 CDS YP_002262309.1 209694381 6988897 complement(885635..887509) 1 NC_011312.1 methyl-accepting chemotaxis protein 887509 6988897 VSAL_I0799 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002262309.1 885635 R 316275 CDS YP_002262310.1 209694382 6986670 887932..889593 1 NC_011312.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 889593 ushA 6986670 ushA Aliivibrio salmonicida LFI1238 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_002262310.1 887932 D 316275 CDS YP_002262311.1 209694383 6988141 complement(889989..890423) 1 NC_011312.1 hypothetical protein 890423 6988141 VSAL_I0801 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262311.1 889989 R 316275 CDS YP_002262312.1 209694384 6986671 complement(890523..893231) 1 NC_011312.1 CDS is extended at the N-terminus in comparison to orthologues other than vibrio orthologues; copper-transporting P-type ATPase 893231 copA 6986671 copA Aliivibrio salmonicida LFI1238 copper-transporting P-type ATPase YP_002262312.1 890523 R 316275 CDS YP_002262313.1 209694385 6988345 893319..893717 1 NC_011312.1 HTH-type transcriptional regulator CueR (copper export regulator) 893717 cueR 6988345 cueR Aliivibrio salmonicida LFI1238 HTH-type transcriptional regulator CueR (copper export regulator) YP_002262313.1 893319 D 316275 CDS YP_002262314.1 209694386 6988362 complement(893742..894596) 1 NC_011312.1 thioredoxin 894596 6988362 VSAL_I0804 Aliivibrio salmonicida LFI1238 thioredoxin YP_002262314.1 893742 R 316275 CDS YP_002262315.1 209694387 6986672 complement(894931..895758) 1 NC_011312.1 short chain dehydrogenase 895758 6986672 VSAL_I0805 Aliivibrio salmonicida LFI1238 short chain dehydrogenase YP_002262315.1 894931 R 316275 CDS YP_002262316.1 209694388 6986673 complement(895887..896792) 1 NC_011312.1 NAD dependent epimerase/dehydratase 896792 6986673 VSAL_I0806 Aliivibrio salmonicida LFI1238 NAD dependent epimerase/dehydratase YP_002262316.1 895887 R 316275 CDS YP_002262317.1 209694389 6986674 896899..897480 1 NC_011312.1 phosphodiesterase 897480 yfcE 6986674 yfcE Aliivibrio salmonicida LFI1238 phosphodiesterase YP_002262317.1 896899 D 316275 CDS YP_002262318.1 209694390 6989431 898508..898819 1 NC_011312.1 transposase 898819 6989431 VSAL_I0809 Aliivibrio salmonicida LFI1238 transposase YP_002262318.1 898508 D 316275 CDS YP_002262319.1 209694391 6986675 898816..899163 1 NC_011312.1 transposase 899163 6986675 VSAL_I0810 Aliivibrio salmonicida LFI1238 transposase YP_002262319.1 898816 D 316275 CDS YP_002262320.1 209694392 6986676 899235..900722 1 NC_011312.1 transposase 900722 6986676 VSAL_I0811 Aliivibrio salmonicida LFI1238 transposase YP_002262320.1 899235 D 316275 CDS YP_002262321.1 209694393 6986677 complement(901288..901833) 1 NC_011312.1 transmembrane regulatory protein ToxS 901833 toxS 6986677 toxS Aliivibrio salmonicida LFI1238 transmembrane regulatory protein ToxS YP_002262321.1 901288 R 316275 CDS YP_002262322.1 209694394 6989314 902909..904807 1 NC_011312.1 molecular chaperone; heat shock protein 90 904807 htpG 6989314 htpG Aliivibrio salmonicida LFI1238 heat shock protein 90 YP_002262322.1 902909 D 316275 CDS YP_002262323.1 209694395 6988688 905084..905731 1 NC_011312.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 905731 adk 6988688 adk Aliivibrio salmonicida LFI1238 adenylate kinase YP_002262323.1 905084 D 316275 CDS YP_002262324.1 209694396 6988225 905815..906783 1 NC_011312.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 906783 hemH 6988225 hemH Aliivibrio salmonicida LFI1238 ferrochelatase YP_002262324.1 905815 D 316275 CDS YP_002262325.1 209694397 6988646 907133..908431 1 NC_011312.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 908431 tig 6988646 tig Aliivibrio salmonicida LFI1238 trigger factor YP_002262325.1 907133 D 316275 CDS YP_002262326.1 209694398 6989297 908532..909155 1 NC_011312.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 909155 clpP 6989297 clpP Aliivibrio salmonicida LFI1238 ATP-dependent Clp protease proteolytic subunit YP_002262326.1 908532 D 316275 CDS YP_002262327.1 209694399 6988142 910404..911612 1 NC_011312.1 transposase 911612 tnpR 6988142 tnpR Aliivibrio salmonicida LFI1238 transposase YP_002262327.1 910404 D 316275 CDS YP_002262328.1 209694400 6989302 912000..914363 1 NC_011312.1 ATP-dependent protease LA 914363 lon 6989302 lon Aliivibrio salmonicida LFI1238 ATP-dependent protease LA YP_002262328.1 912000 D 316275 CDS YP_002262329.1 209694401 6988755 914503..914799 1 NC_011312.1 Possible alternative translational start site after codon 8; DNA-binding protein HU-beta 914799 hupB 6988755 hupB Aliivibrio salmonicida LFI1238 DNA-binding protein HU-beta YP_002262329.1 914503 D 316275 CDS YP_002262330.1 209694402 6988691 915001..916857 1 NC_011312.1 peptidyl-prolyl cis-trans isomerase D 916857 6988691 VSAL_I0823 Aliivibrio salmonicida LFI1238 peptidyl-prolyl cis-trans isomerase D YP_002262330.1 915001 D 316275 CDS YP_002262331.1 209694403 6986678 917063..917359 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 917359 6986678 VSAL_I0824 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262331.1 917063 D 316275 CDS YP_002262332.1 209694404 6986679 complement(917450..918805) 1 NC_011312.1 di-/tripeptide transporter 918805 6986679 VSAL_I0825 Aliivibrio salmonicida LFI1238 di-/tripeptide transporter YP_002262332.1 917450 R 316275 CDS YP_002262333.1 209694405 6986680 919200..919697 1 NC_011312.1 transcriptional activator RfaH 919697 rfaH 6986680 rfaH Aliivibrio salmonicida LFI1238 transcriptional activator RfaH YP_002262333.1 919200 D 316275 CDS YP_002262334.1 209694406 6989089 complement(919744..921411) 1 NC_011312.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 921411 asnB 6989089 asnB Aliivibrio salmonicida LFI1238 asparagine synthetase B YP_002262334.1 919744 R 316275 CDS YP_002262335.1 209694407 6988269 complement(921693..923276) 1 NC_011312.1 sodium/hydrogen antiporter 923276 6988269 VSAL_I0828 Aliivibrio salmonicida LFI1238 sodium/hydrogen antiporter YP_002262335.1 921693 R 316275 CDS YP_002262336.1 209694408 6986681 complement(923355..924569) 1 NC_011312.1 N-acetylglucosamine repressor 924569 nagC 6986681 nagC Aliivibrio salmonicida LFI1238 N-acetylglucosamine repressor YP_002262336.1 923355 R 316275 CDS YP_002262337.1 209694409 6988879 complement(924571..925707) 1 NC_011312.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 925707 nagA 6988879 nagA Aliivibrio salmonicida LFI1238 N-acetylglucosamine-6-phosphate deacetylase YP_002262337.1 924571 R 316275 CDS YP_002262338.1 209694410 6988877 926109..927599 1 NC_011312.1 PTS permease for N-acetylglucosamine and glucose 927599 nagE 6988877 nagE Aliivibrio salmonicida LFI1238 PTS permease for N-acetylglucosamine and glucose YP_002262338.1 926109 D 316275 CDS YP_002262339.1 209694411 6988880 927768..929426 1 NC_011312.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 929426 glnS 6988880 glnS Aliivibrio salmonicida LFI1238 glutaminyl-tRNA synthetase YP_002262339.1 927768 D 316275 CDS YP_002262340.1 209694412 6988598 complement(929500..929943) 1 NC_011312.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 929943 fur 6988598 fur Aliivibrio salmonicida LFI1238 ferric uptake regulator YP_002262340.1 929500 R 316275 CDS YP_002262341.1 209694413 6988576 930125..930589 1 NC_011312.1 hypothetical protein 930589 6988576 VSAL_I0834 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262341.1 930125 D 316275 CDS YP_002262342.1 209694414 6986682 complement(930627..931154) 1 NC_011312.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 931154 fldA 6986682 fldA Aliivibrio salmonicida LFI1238 flavodoxin FldA YP_002262342.1 930627 R 316275 CDS YP_002262343.1 209694415 6988514 complement(931214..931435) 1 NC_011312.1 hypothetical protein 931435 6988514 VSAL_I0836 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262343.1 931214 R 316275 CDS YP_002262344.1 209694416 6986683 complement(931522..932298) 1 NC_011312.1 Expression may be stress-induced; esterase 932298 6986683 VSAL_I0837 Aliivibrio salmonicida LFI1238 esterase YP_002262344.1 931522 R 316275 CDS YP_002262345.1 209694417 6986684 932392..932934 1 NC_011312.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 932934 seqA 6986684 seqA Aliivibrio salmonicida LFI1238 replication initiation regulator SeqA YP_002262345.1 932392 D 316275 CDS YP_002262346.1 209694418 6989238 932983..934629 1 NC_011312.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 934629 pgm 6989238 pgm Aliivibrio salmonicida LFI1238 phosphoglucomutase YP_002262346.1 932983 D 316275 CDS YP_002262347.1 209694419 6988966 934715..935470 1 NC_011312.1 hypothetical protein 935470 6988966 VSAL_I0840 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262347.1 934715 D 316275 CDS YP_002262348.1 209694420 6986685 complement(935590..936879) 1 NC_011312.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 936879 gltA 6986685 gltA Aliivibrio salmonicida LFI1238 type II citrate synthase YP_002262348.1 935590 R 316275 CDS YP_002262349.1 209694421 6988605 937266..937667 1 NC_011312.1 succinate dehydrogenase cytochrome b556 large membrane subunit 937667 sdhC 6988605 sdhC Aliivibrio salmonicida LFI1238 succinate dehydrogenase cytochrome b556 large membrane subunit YP_002262349.1 937266 D 316275 CDS YP_002262350.1 209694422 6989228 937661..938008 1 NC_011312.1 succinate dehydrogenase hydrophobic membrane anchor protein 938008 sdhD 6989228 sdhD Aliivibrio salmonicida LFI1238 succinate dehydrogenase hydrophobic membrane anchor protein YP_002262350.1 937661 D 316275 CDS YP_002262351.1 209694423 6989229 938005..939774 1 NC_011312.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 939774 sdhA 6989229 sdhA Aliivibrio salmonicida LFI1238 succinate dehydrogenase flavoprotein subunit YP_002262351.1 938005 D 316275 CDS YP_002262352.1 209694424 6989226 939789..940502 1 NC_011312.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 940502 sdhB 6989226 sdhB Aliivibrio salmonicida LFI1238 succinate dehydrogenase iron-sulfur subunit YP_002262352.1 939789 D 316275 CDS YP_002262353.1 209694425 6989227 940625..943441 1 NC_011312.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 943441 sucA 6989227 sucA Aliivibrio salmonicida LFI1238 2-oxoglutarate dehydrogenase E1 component YP_002262353.1 940625 D 316275 CDS YP_002262354.1 209694426 6989263 943461..944672 1 NC_011312.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 944672 sucB 6989263 sucB Aliivibrio salmonicida LFI1238 dihydrolipoamide succinyltransferase YP_002262354.1 943461 D 316275 CDS YP_002262355.1 209694427 6989264 944824..945990 1 NC_011312.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 945990 sucC 6989264 sucC Aliivibrio salmonicida LFI1238 succinyl-CoA synthetase subunit beta YP_002262355.1 944824 D 316275 CDS YP_002262356.1 209694428 6989265 945990..946862 1 NC_011312.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 946862 sucD 6989265 sucD Aliivibrio salmonicida LFI1238 succinyl-CoA synthetase subunit alpha YP_002262356.1 945990 D 316275 CDS YP_002262357.1 209694429 6989266 complement(946963..947748) 1 NC_011312.1 high-affinity zinc uptake system membrane protein ZnuB 947748 znuB 6989266 znuB Aliivibrio salmonicida LFI1238 high-affinity zinc uptake system membrane protein ZnuB YP_002262357.1 946963 R 316275 CDS YP_002262358.1 209694430 6989442 complement(947745..948515) 1 NC_011312.1 Expression may be regulated by Fur; high-affinity zinc uptake system atp-binding protein ZnuC 948515 znuC 6989442 znuC Aliivibrio salmonicida LFI1238 high-affinity zinc uptake system atp-binding protein ZnuC YP_002262358.1 947745 R 316275 CDS YP_002262359.1 209694431 6989443 948604..949497 1 NC_011312.1 high-affinity zinc uptake system protein ZnuA precursor 949497 znuA 6989443 znuA Aliivibrio salmonicida LFI1238 high-affinity zinc uptake system protein ZnuA precursor YP_002262359.1 948604 D 316275 CDS YP_002262360.1 209694432 6989441 949494..950834 1 NC_011312.1 CDS contanins a rare Isoleucine start codon (ATA); peptidase 950834 6989441 VSAL_I0853 Aliivibrio salmonicida LFI1238 peptidase YP_002262360.1 949494 D 316275 CDS YP_002262361.1 209694433 6986686 complement(950894..951664) 1 NC_011312.1 hypothetical protein 951664 6986686 VSAL_I0854 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262361.1 950894 R 316275 CDS YP_002262362.1 209694434 6986687 952023..953303 1 NC_011312.1 tyrosyl-tRNA synthetase 953303 tyrS 6986687 tyrS Aliivibrio salmonicida LFI1238 tyrosyl-tRNA synthetase YP_002262362.1 952023 D 316275 CDS YP_002262363.1 209694435 6989346 complement(953440..955812) 1 NC_011312.1 Expression may be stress-induced; hypothetical protein 955812 6989346 VSAL_I0856 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262363.1 953440 R 316275 CDS YP_002262364.1 209694436 6986688 complement(956160..957527) 1 NC_011312.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 957527 dcuC 6986688 dcuC Aliivibrio salmonicida LFI1238 C4-dicarboxylate transporter DcuC YP_002262364.1 956160 R 316275 CDS YP_002262365.1 209694437 6988398 957853..958560 1 NC_011312.1 membrane protein 958560 6988398 VSAL_I0858 Aliivibrio salmonicida LFI1238 membrane protein YP_002262365.1 957853 D 316275 CDS YP_002262366.1 209694438 6986689 958628..958822 1 NC_011312.1 Similar to Vibrio vulnificus Hypothetical protein UniProt:Q8DAI1 (76 aa) fasta scores: E()=2e-12, 68.254% id in 63 aa overlap; query 1-63; subject 11-73. Expression may be stress-induced. The CDS may be truncated at the N-terminus; hypothetical protein 958822 6986689 VSAL_I0859 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262366.1 958628 D 316275 CDS YP_002262367.1 209694439 6986690 complement(958840..959751) 1 NC_011312.1 transcriptional activator MetR 959751 metR 6986690 metR Aliivibrio salmonicida LFI1238 transcriptional activator MetR YP_002262367.1 958840 R 316275 CDS YP_002262368.1 209694440 6988790 960370..961251 1 NC_011312.1 transposase 961251 6988790 VSAL_I0862 Aliivibrio salmonicida LFI1238 transposase YP_002262368.1 960370 D 316275 CDS YP_002262369.1 209694441 6986692 complement(965183..966433) 1 NC_011312.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 966433 glyA 6986692 glyA Aliivibrio salmonicida LFI1238 serine hydroxymethyltransferase YP_002262369.1 965183 R 316275 CDS YP_002262370.1 209694442 6988609 966748..967356 1 NC_011312.1 Expression may be stress-induced; ABC transporter permease 967356 6988609 VSAL_I0865 Aliivibrio salmonicida LFI1238 ABC transporter permease YP_002262370.1 966748 D 316275 CDS YP_002262371.1 209694443 6986693 complement(967429..967755) 1 NC_011312.1 Expression may be stress-induced; lipoprotein 967755 6986693 VSAL_I0866 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262371.1 967429 R 316275 CDS YP_002262372.1 209694444 6986695 complement(968844..969854) 1 NC_011312.1 dipeptide transport ATP-binding protein DppD 969854 dppD 6986695 dppD Aliivibrio salmonicida LFI1238 dipeptide transport ATP-binding protein DppD YP_002262372.1 968844 R 316275 CDS YP_002262373.1 209694445 6988422 complement(969878..971758) 1 NC_011312.1 Similar to Bacillus subtilis oligopeptide-binding protein AppA (PDB 1XOC). Evalue=4e-12, identity=(100, 479); extracellular solute-binding protein 971758 6988422 VSAL_I0869 Aliivibrio salmonicida LFI1238 extracellular solute-binding protein YP_002262373.1 969878 R 316275 CDS YP_002262374.1 209694446 6986696 complement(971751..972803) 1 NC_011312.1 ABC transporter permease 972803 yejE 6986696 yejE Aliivibrio salmonicida LFI1238 ABC transporter permease YP_002262374.1 971751 R 316275 CDS YP_002262375.1 209694447 6989430 complement(972806..973834) 1 NC_011312.1 inner membrane ABC transporter permease protein 973834 yejB 6989430 yejB Aliivibrio salmonicida LFI1238 inner membrane ABC transporter permease protein YP_002262375.1 972806 R 316275 CDS YP_002262376.1 209694448 6989429 complement(974090..974266) 1 NC_011312.1 hypothetical protein 974266 6989429 VSAL_I0872 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262376.1 974090 R 316275 CDS YP_002262377.1 209694449 6986697 complement(974411..975142) 1 NC_011312.1 hypothetical protein 975142 6986697 VSAL_I0873 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262377.1 974411 R 316275 CDS YP_002262378.1 209694450 6986698 complement(975139..976839) 1 NC_011312.1 hypothetical protein 976839 6986698 VSAL_I0874 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262378.1 975139 R 316275 CDS YP_002262379.1 209694451 6986699 complement(976947..978521) 1 NC_011312.1 CDS is extended at the N-terminus in comparison to the Bacillus subtilis orthologue; glycine betaine transporter OpuD 978521 6986699 VSAL_I0875 Aliivibrio salmonicida LFI1238 glycine betaine transporter OpuD YP_002262379.1 976947 R 316275 CDS YP_002262380.1 209694452 6986700 complement(978620..979609) 1 NC_011312.1 membrane dipeptidase 979609 6986700 VSAL_I0876 Aliivibrio salmonicida LFI1238 membrane dipeptidase YP_002262380.1 978620 R 316275 CDS YP_002262381.1 209694453 6986701 complement(979666..981129) 1 NC_011312.1 aldehyde dehydrogenase 981129 6986701 VSAL_I0877 Aliivibrio salmonicida LFI1238 aldehyde dehydrogenase YP_002262381.1 979666 R 316275 CDS YP_002262382.1 209694454 6986702 complement(981216..981599) 1 NC_011312.1 Expression may be stress-induced; endoribonuclease L-PSP 981599 6986702 VSAL_I0878 Aliivibrio salmonicida LFI1238 endoribonuclease L-PSP YP_002262382.1 981216 R 316275 CDS YP_002262383.1 209694455 6986703 981768..982646 1 NC_011312.1 LysR family transcriptional regulator 982646 6986703 VSAL_I0879 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262383.1 981768 D 316275 CDS YP_002262384.1 209694456 6986704 982878..983096 1 NC_011312.1 hypothetical protein 983096 6986704 VSAL_I0880 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262384.1 982878 D 316275 CDS YP_002262385.1 209694457 6986705 complement(983209..983985) 1 NC_011312.1 hypothetical protein 983985 6986705 VSAL_I0881 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262385.1 983209 R 316275 CDS YP_002262386.1 209694458 6986706 complement(984010..984765) 1 NC_011312.1 hypothetical protein 984765 6986706 VSAL_I0882 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262386.1 984010 R 316275 CDS YP_002262387.1 209694459 6986707 complement(984783..987374) 1 NC_011312.1 Expression may be regulated by Fur. No significant database matches; hypothetical protein 987374 6986707 VSAL_I0883 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262387.1 984783 R 316275 CDS YP_002262388.1 209694460 6986708 complement(987481..987894) 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 987894 6986708 VSAL_I0884 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262388.1 987481 R 316275 CDS YP_002262389.1 209694461 6986709 complement(988174..988725) 1 NC_011312.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 988725 gmhB 6986709 gmhB Aliivibrio salmonicida LFI1238 D,D-heptose 1,7-bisphosphate phosphatase YP_002262389.1 988174 R 316275 CDS YP_002262390.1 209694462 6988613 988979..990013 1 NC_011312.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 990013 metN 6988613 metN Aliivibrio salmonicida LFI1238 DL-methionine transporter ATP-binding subunit YP_002262390.1 988979 D 316275 CDS YP_002262391.1 209694463 6988799 990003..990680 1 NC_011312.1 D-methionine transport system permease protein MetI 990680 metI 6988799 metI Aliivibrio salmonicida LFI1238 D-methionine transport system permease protein MetI YP_002262391.1 990003 D 316275 CDS YP_002262392.1 209694464 6988795 990725..991534 1 NC_011312.1 DL-methionine transporter substrate-binding subunit 991534 metQ 6988795 metQ Aliivibrio salmonicida LFI1238 DL-methionine transporter substrate-binding subunit YP_002262392.1 990725 D 316275 CDS YP_002262393.1 209694465 6988800 complement(991596..991733) 1 NC_011312.1 50S ribosomal protein L36 991733 6988800 VSAL_I0889 Aliivibrio salmonicida LFI1238 50S ribosomal protein L36 YP_002262393.1 991596 R 316275 CDS YP_002262394.1 209694466 6986710 complement(991733..991990) 1 NC_011312.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 991990 rpmE2 6986710 rpmE2 Aliivibrio salmonicida LFI1238 50S ribosomal protein L31 YP_002262394.1 991733 R 316275 CDS YP_002262395.1 209694467 6989174 992134..992832 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 992832 6989174 VSAL_I0891 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262395.1 992134 D 316275 CDS YP_002262396.1 209694468 6986711 992979..994694 1 NC_011312.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 994694 proS 6986711 proS Aliivibrio salmonicida LFI1238 prolyl-tRNA synthetase YP_002262396.1 992979 D 316275 CDS YP_002262397.1 209694469 6989015 complement(994766..995236) 1 NC_011312.1 hypothetical protein 995236 6989015 VSAL_I0893 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262397.1 994766 R 316275 CDS YP_002262398.1 209694470 6986713 996870..997184 1 NC_011312.1 transposase 997184 6986713 VSAL_I0895 Aliivibrio salmonicida LFI1238 transposase YP_002262398.1 996870 D 316275 CDS YP_002262399.1 209694471 6986714 997181..997528 1 NC_011312.1 transposase 997528 6986714 VSAL_I0896 Aliivibrio salmonicida LFI1238 transposase YP_002262399.1 997181 D 316275 CDS YP_002262400.1 209694472 6986716 complement(999132..1000010) 1 NC_011312.1 Expression may be stress-induced. Probably regulator of genes involved in synthesis of phosphosugars; RpiR family transcriptional regulator 1000010 6986716 VSAL_I0898 Aliivibrio salmonicida LFI1238 RpiR family transcriptional regulator YP_002262400.1 999132 R 316275 CDS YP_002262401.1 209694473 6986717 1000299..1001192 1 NC_011312.1 dihydropicolinate synthase 1001192 6986717 VSAL_I0899 Aliivibrio salmonicida LFI1238 dihydropicolinate synthase YP_002262401.1 1000299 D 316275 CDS YP_002262402.1 209694474 6986718 1001328..1001546 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 1001546 6986718 VSAL_I0900 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262402.1 1001328 D 316275 CDS YP_002262403.1 209694475 6986719 1001546..1001734 1 NC_011312.1 hypothetical protein 1001734 6986719 VSAL_I0901 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262403.1 1001546 D 316275 CDS YP_002262404.1 209694476 6988327 1003914..1004228 1 NC_011312.1 transposase 1004228 6988327 VSAL_I0903 Aliivibrio salmonicida LFI1238 transposase YP_002262404.1 1003914 D 316275 CDS YP_002262405.1 209694477 6986721 1004225..1004572 1 NC_011312.1 transposase 1004572 6986721 VSAL_I0904 Aliivibrio salmonicida LFI1238 transposase YP_002262405.1 1004225 D 316275 CDS YP_002262406.1 209694478 6988474 complement(1007807..1008676) 1 NC_011312.1 hydrolase 1008676 6988474 VSAL_I0907 Aliivibrio salmonicida LFI1238 hydrolase YP_002262406.1 1007807 R 316275 CDS YP_002262407.1 209694479 6986724 complement(1008683..1009240) 1 NC_011312.1 outer membrane lipoprotein, Slp family 1009240 6986724 VSAL_I0908 Aliivibrio salmonicida LFI1238 outer membrane lipoprotein, Slp family YP_002262407.1 1008683 R 316275 CDS YP_002262408.1 209694480 6986725 complement(1009256..1009555) 1 NC_011312.1 hypothetical protein 1009555 6986725 VSAL_I0909 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262408.1 1009256 R 316275 CDS YP_002262409.1 209694481 6986726 complement(1009618..1010319) 1 NC_011312.1 glycoprotease 1010319 6986726 VSAL_I0910 Aliivibrio salmonicida LFI1238 glycoprotease YP_002262409.1 1009618 R 316275 CDS YP_002262410.1 209694482 6986727 complement(1010327..1012282) 1 NC_011312.1 Similar to Escherichia coli ATP-dependent helicase YoaA UniProt:P76257 (636 aa) fasta scores: E()=5.9e-163, 65.714% id in 630 aa; ATP-dependent helicase 1012282 6986727 VSAL_I0911 Aliivibrio salmonicida LFI1238 ATP-dependent helicase YP_002262410.1 1010327 R 316275 CDS YP_002262411.1 209694483 6986728 1012702..1013535 1 NC_011312.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1013535 purU 6986728 purU Aliivibrio salmonicida LFI1238 formyltetrahydrofolate deformylase YP_002262411.1 1012702 D 316275 CDS YP_002262412.1 209694484 6989046 complement(1013608..1014405) 1 NC_011312.1 hypothetical protein 1014405 6989046 VSAL_I0913 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262412.1 1013608 R 316275 CDS YP_002262413.1 209694485 6986729 complement(1014523..1014720) 1 NC_011312.1 No significant database matches. Doubtful CDS, poor translational start site; hypothetical protein 1014720 6986729 VSAL_I0914 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262413.1 1014523 R 316275 CDS YP_002262414.1 209694486 6986730 1014975..1015133 1 NC_011312.1 membrane protein 1015133 6986730 VSAL_I0915 Aliivibrio salmonicida LFI1238 membrane protein YP_002262414.1 1014975 D 316275 CDS YP_002262415.1 209694487 6988791 complement(1015660..1016541) 1 NC_011312.1 transposase 1016541 6988791 VSAL_I0917 Aliivibrio salmonicida LFI1238 transposase YP_002262415.1 1015660 R 316275 CDS YP_002262416.1 209694488 6988217 complement(1017599..1017925) 1 NC_011312.1 lipoprotein 1017925 6988217 VSAL_I0919 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262416.1 1017599 R 316275 CDS YP_002262417.1 209694489 6986733 complement(1018025..1020013) 1 NC_011312.1 nitrate and nitrite sensing methyl-accepting chemotaxis protein 1020013 6986733 VSAL_I0920 Aliivibrio salmonicida LFI1238 nitrate and nitrite sensing methyl-accepting chemotaxis protein YP_002262417.1 1018025 R 316275 CDS YP_002262418.1 209694490 6986734 1020181..1020630 1 NC_011312.1 transcriptional regulator NrdR 1020630 nrdR 6986734 nrdR Aliivibrio salmonicida LFI1238 transcriptional regulator NrdR YP_002262418.1 1020181 D 316275 CDS YP_002262419.1 209694491 6989102 1020632..1021753 1 NC_011312.1 pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) 1021753 ribD 6989102 ribD Aliivibrio salmonicida LFI1238 pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) YP_002262419.1 1020632 D 316275 CDS YP_002262420.1 209694492 6989098 1021757..1022413 1 NC_011312.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1022413 ribC 6989098 ribC Aliivibrio salmonicida LFI1238 riboflavin synthase subunit alpha YP_002262420.1 1021757 D 316275 CDS YP_002262421.1 209694493 6989097 1022450..1023559 1 NC_011312.1 3,4-dihydroxy-2-butanone 4-phosphate synthase 1023559 ribBA 6989097 ribBA Aliivibrio salmonicida LFI1238 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002262421.1 1022450 D 316275 CDS YP_002262422.1 209694494 6989096 1023709..1024179 1 NC_011312.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1024179 ribH 6989096 ribH Aliivibrio salmonicida LFI1238 6,7-dimethyl-8-ribityllumazine synthase YP_002262422.1 1023709 D 316275 CDS YP_002262423.1 209694495 6989101 1024179..1024646 1 NC_011312.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1024646 nusB 6989101 nusB Aliivibrio salmonicida LFI1238 transcription antitermination protein NusB YP_002262423.1 1024179 D 316275 CDS YP_002262424.1 209694496 6988926 1024736..1025728 1 NC_011312.1 thiamine-monophosphate kinase 1025728 thiL 6988926 thiL Aliivibrio salmonicida LFI1238 thiamine-monophosphate kinase YP_002262424.1 1024736 D 316275 CDS YP_002262425.1 209694497 6989288 1025731..1026234 1 NC_011312.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 1026234 pgpA 6989288 pgpA Aliivibrio salmonicida LFI1238 phosphatidylglycerophosphatase A YP_002262425.1 1025731 D 316275 CDS YP_002262426.1 209694498 6988765 1027355..1029592 1 NC_011312.1 The CDS appears to have a deletion of around 150 amino acid residues after codon 346 in comparison to the Vibrio cholerae orthologue; autoinducer 2 sensor kinase/phosphatase LuxQ 1029592 luxQ 6988765 luxQ Aliivibrio salmonicida LFI1238 autoinducer 2 sensor kinase/phosphatase LuxQ YP_002262426.1 1027355 D 316275 CDS YP_002262427.1 209694499 6988766 complement(1029589..1029864) 1 NC_011312.1 hypothetical protein 1029864 6988766 VSAL_I0931 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262427.1 1029589 R 316275 CDS YP_002262428.1 209694500 6986735 1029953..1030303 1 NC_011312.1 antibiotic biosynthesis monooxygenase 1030303 6986735 VSAL_I0932 Aliivibrio salmonicida LFI1238 antibiotic biosynthesis monooxygenase YP_002262428.1 1029953 D 316275 CDS YP_002262429.1 209694501 6986736 complement(1030373..1032256) 1 NC_011312.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1032256 dxs 6986736 dxs Aliivibrio salmonicida LFI1238 1-deoxy-D-xylulose-5-phosphate synthase YP_002262429.1 1030373 R 316275 CDS YP_002262430.1 209694502 6988435 complement(1032279..1033175) 1 NC_011312.1 geranyltranstransferase 1033175 ispA 6988435 ispA Aliivibrio salmonicida LFI1238 geranyltranstransferase YP_002262430.1 1032279 R 316275 CDS YP_002262431.1 209694503 6988723 complement(1033168..1033410) 1 NC_011312.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1033410 xseB 6988723 xseB Aliivibrio salmonicida LFI1238 exodeoxyribonuclease VII small subunit YP_002262431.1 1033168 R 316275 CDS YP_002262432.1 209694504 6989421 1033690..1034454 1 NC_011312.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 1034454 motA 6989421 motA Aliivibrio salmonicida LFI1238 flagellar motor protein PomA YP_002262432.1 1033690 D 316275 CDS YP_002262433.1 209694505 6988821 1034469..1035398 1 NC_011312.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 1035398 motB 6988821 motB Aliivibrio salmonicida LFI1238 flagellar motor protein MotB YP_002262433.1 1034469 D 316275 CDS YP_002262434.1 209694506 6988822 1035565..1037013 1 NC_011312.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1037013 thiI 6988822 thiI Aliivibrio salmonicida LFI1238 thiamine biosynthesis protein ThiI YP_002262434.1 1035565 D 316275 CDS YP_002262435.1 209694507 6989286 complement(1037075..1037992) 1 NC_011312.1 LysR family transcriptional regulator 1037992 6989286 VSAL_I0939 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262435.1 1037075 R 316275 CDS YP_002262436.1 209694508 6986737 1038067..1039011 1 NC_011312.1 integral membrane protein 1039011 6986737 VSAL_I0940 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002262436.1 1038067 D 316275 CDS YP_002262437.1 209694509 6986738 complement(1039081..1039671) 1 NC_011312.1 protein ThiJ 1039671 thiJ 6986738 thiJ Aliivibrio salmonicida LFI1238 protein ThiJ YP_002262437.1 1039081 R 316275 CDS YP_002262438.1 209694510 6989287 complement(1039668..1040567) 1 NC_011312.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 1040567 panE 6989287 panE Aliivibrio salmonicida LFI1238 2-dehydropantoate 2-reductase YP_002262438.1 1039668 R 316275 CDS YP_002262439.1 209694511 6988929 complement(1041789..1043132) 1 NC_011312.1 MSF transporter 1043132 6988929 VSAL_I0944 Aliivibrio salmonicida LFI1238 MSF transporter YP_002262439.1 1041789 R 316275 CDS YP_002262440.1 209694512 6986739 complement(1043240..1043797) 1 NC_011312.1 peptidyl-prolyl cis-trans isomerase precursor 1043797 rotA 6986739 rotA Aliivibrio salmonicida LFI1238 peptidyl-prolyl cis-trans isomerase precursor YP_002262440.1 1043240 R 316275 CDS YP_002262441.1 209694513 6989142 complement(1043800..1044369) 1 NC_011312.1 lipoprotein 1044369 6989142 VSAL_I0946 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262441.1 1043800 R 316275 CDS YP_002262442.1 209694514 6986740 complement(1044383..1045531) 1 NC_011312.1 Weakly similar to Escherichia coli.; rsmC; Ribosomal RNA small subunit methyltransferase C (P39406); length=342; id 28.620%; ungapped id 30.249%; E()=4.9e-13; 297 aa overlap; query 125-418; subject 57-340; methyltransferase 1045531 6986740 VSAL_I0947 Aliivibrio salmonicida LFI1238 methyltransferase YP_002262442.1 1044383 R 316275 CDS YP_002262443.1 209694515 6986741 1045625..1045939 1 NC_011312.1 BolA protein 1045939 bolA 6986741 bolA Aliivibrio salmonicida LFI1238 BolA protein YP_002262443.1 1045625 D 316275 CDS YP_002262444.1 209694516 6988293 1046336..1047676 1 NC_011312.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1047676 nqrA 6988293 nqrA Aliivibrio salmonicida LFI1238 Na(+)-translocating NADH-quinone reductase subunit A YP_002262444.1 1046336 D 316275 CDS YP_002262445.1 209694517 6988907 1047680..1048924 1 NC_011312.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1048924 nqrB 6988907 nqrB Aliivibrio salmonicida LFI1238 Na(+)-translocating NADH-quinone reductase subunit B YP_002262445.1 1047680 D 316275 CDS YP_002262446.1 209694518 6988908 1048914..1049684 1 NC_011312.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1049684 nqrC 6988908 nqrC Aliivibrio salmonicida LFI1238 Na(+)-translocating NADH-quinone reductase subunit C YP_002262446.1 1048914 D 316275 CDS YP_002262447.1 209694519 6988909 1049684..1050313 1 NC_011312.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1050313 nqrD 6988909 nqrD Aliivibrio salmonicida LFI1238 Na(+)-translocating NADH-quinone reductase subunit D YP_002262447.1 1049684 D 316275 CDS YP_002262448.1 209694520 6988910 1050321..1050917 1 NC_011312.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1050917 nqrE 6988910 nqrE Aliivibrio salmonicida LFI1238 Na(+)-translocating NADH-quinone reductase subunit E YP_002262448.1 1050321 D 316275 CDS YP_002262449.1 209694521 6988911 1050947..1052173 1 NC_011312.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1052173 nqrF 6988911 nqrF Aliivibrio salmonicida LFI1238 Na(+)-translocating NADH-quinone reductase subunit F YP_002262449.1 1050947 D 316275 CDS YP_002262450.1 209694522 6988912 1052339..1053376 1 NC_011312.1 thiamine biosynthesis lipoprotein ApbE 1053376 6988912 VSAL_I0955 Aliivibrio salmonicida LFI1238 thiamine biosynthesis lipoprotein ApbE YP_002262450.1 1052339 D 316275 CDS YP_002262451.1 209694523 6986742 1053388..1053621 1 NC_011312.1 hypothetical protein 1053621 6986742 VSAL_I0956 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262451.1 1053388 D 316275 CDS YP_002262452.1 209694524 6986743 1053775..1054689 1 NC_011312.1 DNA polymerase IV 1054689 dinB 6986743 dinB Aliivibrio salmonicida LFI1238 DNA polymerase IV YP_002262452.1 1053775 D 316275 CDS YP_002262453.1 209694525 6986744 1055612..1056493 1 NC_011312.1 transposase 1056493 6986744 VSAL_I0959 Aliivibrio salmonicida LFI1238 transposase YP_002262453.1 1055612 D 316275 CDS YP_002262454.1 209694526 6986745 complement(1057929..1058141) 1 NC_011312.1 c.ahdi; DNA methyltransferase 1058141 ahdIC 6986745 ahdIC Aliivibrio salmonicida LFI1238 DNA methyltransferase YP_002262454.1 1057929 R 316275 CDS YP_002262455.1 209694527 6988226 1058250..1058786 1 NC_011312.1 hypothetical protein 1058786 6988226 VSAL_I0961 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262455.1 1058250 D 316275 CDS YP_002262456.1 209694528 6986746 1058783..1060183 1 NC_011312.1 type III restriction enzyme 1060183 6986746 VSAL_I0962 Aliivibrio salmonicida LFI1238 type III restriction enzyme YP_002262456.1 1058783 D 316275 CDS YP_002262457.1 209694529 6986747 complement(1060435..1061100) 1 NC_011312.1 hypothetical protein 1061100 6986747 VSAL_I0963 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262457.1 1060435 R 316275 CDS YP_002262458.1 209694530 6986749 complement(1063619..1064671) 1 NC_011312.1 DNA polymerase IV 1064671 dinB 6986749 dinB Aliivibrio salmonicida LFI1238 DNA polymerase IV YP_002262458.1 1063619 R 316275 CDS YP_002262459.1 209694531 6988408 complement(1064843..1066204) 1 NC_011312.1 Similar to Bacillus subtilis Tyrosine recombinase XerC UniProt:P39776 (304 aa) blastp scores: E()=3e-04. Lack of similarity at the N-terminus in comparison to other proteins; phage recombinase/integrase 1066204 6988408 VSAL_I0966 Aliivibrio salmonicida LFI1238 phage recombinase/integrase YP_002262459.1 1064843 R 316275 CDS YP_002262460.1 209694532 6986750 complement(1066206..1066727) 1 NC_011312.1 phage protein 1066727 6986750 VSAL_I0967 Aliivibrio salmonicida LFI1238 phage protein YP_002262460.1 1066206 R 316275 CDS YP_002262461.1 209694533 6986751 complement(1066728..1069151) 1 NC_011312.1 Weakly similar to Pseudomonas syringae pv. tomato site-specific recombinase, phage integrase family domain protein. UniProt:Q87W32 (EMBL:AE016853) (698 aa) fasta scores: E()=1e-14, 26.775% id in 676 aa. Lack of similarity at both the N- and C-terminus in comparison to the Pseudomonas syringae pv. tomato site-specific recombinase; phage protein 1069151 6986751 VSAL_I0968 Aliivibrio salmonicida LFI1238 phage protein YP_002262461.1 1066728 R 316275 CDS YP_002262462.1 209694534 6986752 complement(1069145..1071484) 1 NC_011312.1 phage protein 1071484 6986752 VSAL_I0969 Aliivibrio salmonicida LFI1238 phage protein YP_002262462.1 1069145 R 316275 CDS YP_002262463.1 209694535 6986755 complement(1072345..1073226) 1 NC_011312.1 transposase 1073226 6986755 VSAL_I0972 Aliivibrio salmonicida LFI1238 transposase YP_002262463.1 1072345 R 316275 CDS YP_002262464.1 209694536 6986756 complement(1074320..1075774) 1 NC_011312.1 Expression may be regulated by Fur; aminoacyl-histidine dipeptidase 1075774 6986756 VSAL_I0973 Aliivibrio salmonicida LFI1238 aminoacyl-histidine dipeptidase YP_002262464.1 1074320 R 316275 CDS YP_002262465.1 209694537 6986757 1076578..1077870 1 NC_011312.1 Expression may be regulated by Fur; membrane permease 1077870 6986757 VSAL_I0974 Aliivibrio salmonicida LFI1238 membrane permease YP_002262465.1 1076578 D 316275 CDS YP_002262466.1 209694538 6986758 1077908..1078366 1 NC_011312.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 1078366 gpt 6986758 gpt Aliivibrio salmonicida LFI1238 xanthine-guanine phosphoribosyltransferase YP_002262466.1 1077908 D 316275 CDS YP_002262467.1 209694539 6988621 1078525..1079766 1 NC_011312.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 1079766 frsA 6988621 frsA Aliivibrio salmonicida LFI1238 fermentation/respiration switch protein YP_002262467.1 1078525 D 316275 CDS YP_002262468.1 209694540 6986759 1079931..1081040 1 NC_011312.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1081040 proB 6986759 proB Aliivibrio salmonicida LFI1238 gamma-glutamyl kinase YP_002262468.1 1079931 D 316275 CDS YP_002262469.1 209694541 6989012 1081071..1082312 1 NC_011312.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1082312 proA 6989012 proA Aliivibrio salmonicida LFI1238 gamma-glutamyl phosphate reductase YP_002262469.1 1081071 D 316275 CDS YP_002262470.1 209694542 6989011 complement(1082414..1083379) 1 NC_011312.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1083379 lipA 6989011 lipA Aliivibrio salmonicida LFI1238 lipoyl synthase YP_002262470.1 1082414 R 316275 CDS YP_002262471.1 209694543 6988751 complement(1083372..1084058) 1 NC_011312.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 1084058 lipB 6988751 lipB Aliivibrio salmonicida LFI1238 lipoate-protein ligase B YP_002262471.1 1083372 R 316275 CDS YP_002262472.1 209694544 6988752 complement(1084196..1084465) 1 NC_011312.1 hypothetical protein 1084465 6988752 VSAL_I0981 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262472.1 1084196 R 316275 CDS YP_002262473.1 209694545 6986760 complement(1084621..1085796) 1 NC_011312.1 penicillin-binding protein 5 precursor (D-alanyl-D-alanin carboxypeptidase fraction A) 1085796 dacA 6986760 dacA Aliivibrio salmonicida LFI1238 penicillin-binding protein 5 precursor (D-alanyl-D-alanin carboxypeptidase fraction A) YP_002262473.1 1084621 R 316275 CDS YP_002262474.1 209694546 6988385 complement(1086079..1086888) 1 NC_011312.1 rare lipoprotein A 1086888 6988385 VSAL_I0983 Aliivibrio salmonicida LFI1238 rare lipoprotein A YP_002262474.1 1086079 R 316275 CDS YP_002262475.1 209694547 6986761 complement(1086892..1088013) 1 NC_011312.1 rod shape-determining protein RodA 1088013 mrdB 6986761 mrdB Aliivibrio salmonicida LFI1238 rod shape-determining protein RodA YP_002262475.1 1086892 R 316275 CDS YP_002262476.1 209694548 6988831 complement(1088013..1089890) 1 NC_011312.1 penicillin-binding protein 2 1089890 mrdA 6988831 mrdA Aliivibrio salmonicida LFI1238 penicillin-binding protein 2 YP_002262476.1 1088013 R 316275 CDS YP_002262477.1 209694549 6988830 complement(1089894..1090364) 1 NC_011312.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1090364 6988830 VSAL_I0986 Aliivibrio salmonicida LFI1238 rRNA large subunit methyltransferase YP_002262477.1 1089894 R 316275 CDS YP_002262478.1 209694550 6986762 complement(1090368..1090685) 1 NC_011312.1 hypothetical protein 1090685 6986762 VSAL_I0987 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262478.1 1090368 R 316275 CDS YP_002262479.1 209694551 6986763 complement(1090734..1091771) 1 NC_011312.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1091771 holA 6986763 holA Aliivibrio salmonicida LFI1238 DNA polymerase III subunit delta YP_002262479.1 1090734 R 316275 CDS YP_002262480.1 209694552 6988675 complement(1091774..1092406) 1 NC_011312.1 Lack of similarity at the N-terminus in comparison to other proteins; rare lipoprotein B 1092406 6988675 VSAL_I0989 Aliivibrio salmonicida LFI1238 rare lipoprotein B YP_002262480.1 1091774 R 316275 CDS YP_002262481.1 209694553 6986764 complement(1092574..1095150) 1 NC_011312.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1095150 leuS 6986764 leuS Aliivibrio salmonicida LFI1238 leucyl-tRNA synthetase YP_002262481.1 1092574 R 316275 CDS YP_002262482.1 209694554 6988748 1095318..1095800 1 NC_011312.1 hypothetical protein 1095800 6988748 VSAL_I0991 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262482.1 1095318 D 316275 CDS YP_002262483.1 209694555 6986765 complement(1095871..1097376) 1 NC_011312.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 1097376 lnt 6986765 lnt Aliivibrio salmonicida LFI1238 apolipoprotein N-acyltransferase YP_002262483.1 1095871 R 316275 CDS YP_002262484.1 209694556 6988754 complement(1097468..1098343) 1 NC_011312.1 hemolysin 1098343 6988754 VSAL_I0993 Aliivibrio salmonicida LFI1238 hemolysin YP_002262484.1 1097468 R 316275 CDS YP_002262485.1 209694557 6986766 complement(1098413..1098874) 1 NC_011312.1 metalloprotease 1098874 6986766 VSAL_I0994 Aliivibrio salmonicida LFI1238 metalloprotease YP_002262485.1 1098413 R 316275 CDS YP_002262486.1 209694558 6986767 complement(1098896..1099966) 1 NC_011312.1 PhoH-like protein 1099966 6986767 VSAL_I0995 Aliivibrio salmonicida LFI1238 PhoH-like protein YP_002262486.1 1098896 R 316275 CDS YP_002262487.1 209694559 6986768 complement(1100110..1101534) 1 NC_011312.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1101534 6986768 VSAL_I0996 Aliivibrio salmonicida LFI1238 (dimethylallyl)adenosine tRNA methylthiotransferase YP_002262487.1 1100110 R 316275 CDS YP_002262488.1 209694560 6986769 1101750..1102907 1 NC_011312.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1102907 ubiF 6986769 ubiF Aliivibrio salmonicida LFI1238 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_002262488.1 1101750 D 316275 CDS YP_002262489.1 209694561 6989352 1103104..1103418 1 NC_011312.1 transposase 1103418 6989352 VSAL_I0998 Aliivibrio salmonicida LFI1238 transposase YP_002262489.1 1103104 D 316275 CDS YP_002262490.1 209694562 6986770 1103415..1103762 1 NC_011312.1 transposase 1103762 6986770 VSAL_I0999 Aliivibrio salmonicida LFI1238 transposase YP_002262490.1 1103415 D 316275 CDS YP_002262491.1 209694563 6986772 complement(1105138..1106331) 1 NC_011312.1 transposase 1106331 6986772 VSAL_I1001 Aliivibrio salmonicida LFI1238 transposase YP_002262491.1 1105138 R 316275 CDS YP_002262492.1 209694564 6986774 complement(1107542..1108141) 1 NC_011312.1 HTH-type transcriptional regulator 1108141 6986774 VSAL_I1003 Aliivibrio salmonicida LFI1238 HTH-type transcriptional regulator YP_002262492.1 1107542 R 316275 CDS YP_002262493.1 209694565 6986775 1108316..1109266 1 NC_011312.1 Possible alternative translational start site after codon 17; transporter 1109266 6986775 VSAL_I1004 Aliivibrio salmonicida LFI1238 transporter YP_002262493.1 1108316 D 316275 CDS YP_002262494.1 209694566 6986776 1109413..1109643 1 NC_011312.1 hypothetical protein 1109643 6986776 VSAL_I1005 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262494.1 1109413 D 316275 CDS YP_002262495.1 209694567 6986777 complement(1109644..1109895) 1 NC_011312.1 hypothetical protein 1109895 6986777 VSAL_I1006 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262495.1 1109644 R 316275 CDS YP_002262496.1 209694568 6986778 1109923..1110495 1 NC_011312.1 Possible alternative translational start site after codon 44; hypothetical protein 1110495 6986778 VSAL_I1007 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262496.1 1109923 D 316275 CDS YP_002262497.1 209694569 6986779 complement(1110598..1111641) 1 NC_011312.1 Similar to Bacteriophage 186 Integrase Int UniProt:P06723 (336 aa) fasta scores: E()=2.6e-53, 45.190% id in 343 aa; phage integrase 1111641 int 6986779 int Aliivibrio salmonicida LFI1238 phage integrase YP_002262497.1 1110598 R 316275 CDS YP_002262498.1 209694570 6988718 complement(1111704..1112492) 1 NC_011312.1 Similar to Vibrio phage K139 glo glo. UniProt:Q37932 (EMBL:AF125163) (137 aa) fasta scores: E()=1.7e-06, 28.814% id in 118 aa, and to Vibrio phage K139 glo glo. UniProt:Q37932 (EMBL:AF125163) (137 aa) fasta scores: E()=1.7e-06, 28.814% id in 118 aa. Lack of similarity at the N- and C-terminus in comparison to Vibrio phage K139 glo; exclusion protein 1112492 6988718 VSAL_I1009 Aliivibrio salmonicida LFI1238 exclusion protein YP_002262498.1 1111704 R 316275 CDS YP_002262499.1 209694571 6986780 complement(1112515..1113471) 1 NC_011312.1 Similar to Vibrio phage K139 ci. UniProt:Q9XJF9 (EMBL:AF125163) (215 aa) fasta scores: E()=4.1e-21,47.257% id in 237 aa, and to Vibrio phage K139 ci. UniProt:Q9XJF9 (EMBL:AF125163) (215 aa) fasta scores: E()=4.1e-21, 47.257% id in 237 aa. Lack of similarity at the N-terminus in comparison to Vibrio phage K139 ci; phage regulatory protein CI 1113471 6986780 VSAL_I1010 Aliivibrio salmonicida LFI1238 phage regulatory protein CI YP_002262499.1 1112515 R 316275 CDS YP_002262500.1 209694572 6986781 1113644..1113844 1 NC_011312.1 Weakly similar to Haemophilus phage HP2 orf2(s)cox UniProt:Q775G1 (70 aa) blastp scores: E()=0.020; phage regulatory protein 1113844 6986781 VSAL_I1011 Aliivibrio salmonicida LFI1238 phage regulatory protein YP_002262500.1 1113644 D 316275 CDS YP_002262501.1 209694573 6986782 1113931..1114473 1 NC_011312.1 phage regulatory protein CII 1114473 cII 6986782 cII Aliivibrio salmonicida LFI1238 phage regulatory protein CII YP_002262501.1 1113931 D 316275 CDS YP_002262502.1 209694574 6988329 1114483..1114806 1 NC_011312.1 phage gene 1114806 6988329 VSAL_I1013 Aliivibrio salmonicida LFI1238 phage gene YP_002262502.1 1114483 D 316275 CDS YP_002262503.1 209694575 6986783 1114874..1115356 1 NC_011312.1 phage protein 1115356 6986783 VSAL_I1014 Aliivibrio salmonicida LFI1238 phage protein YP_002262503.1 1114874 D 316275 CDS YP_002262504.1 209694576 6986784 1115353..1115754 1 NC_011312.1 Weakly similar to Vibrio phage K139 orf5. UniProt:Q8W764 (EMBL:AF125163) (104 aa) blastp scores: E()=5.4; phage protein 1115754 6986784 VSAL_I1015 Aliivibrio salmonicida LFI1238 phage protein YP_002262504.1 1115353 D 316275 CDS YP_002262505.1 209694577 6986785 1115754..1115882 1 NC_011312.1 phage protein 1115882 6986785 VSAL_I1016 Aliivibrio salmonicida LFI1238 phage protein YP_002262505.1 1115754 D 316275 CDS YP_002262506.1 209694578 6986786 1115885..1116157 1 NC_011312.1 Weakly similar to Bacteriophage phi1026b gp41. UniProt:Q6JIJ0 (EMBL:AY453853) (85 aa) blastp scores: E()=0.22; phage protein 1116157 6986786 VSAL_I1017 Aliivibrio salmonicida LFI1238 phage protein YP_002262506.1 1115885 D 316275 CDS YP_002262507.1 209694579 6986787 1116160..1116390 1 NC_011312.1 phage protein 1116390 6986787 VSAL_I1018 Aliivibrio salmonicida LFI1238 phage protein YP_002262507.1 1116160 D 316275 CDS YP_002262508.1 209694580 6986788 1116387..1116746 1 NC_011312.1 phage protein 1116746 6986788 VSAL_I1019 Aliivibrio salmonicida LFI1238 phage protein YP_002262508.1 1116387 D 316275 CDS YP_002262509.1 209694581 6986789 1116746..1119259 1 NC_011312.1 Similar to Bacteriophage 186 Replication gene A protein (gpa) UniProt:P41064 (694 aa) fasta scores: E()=1e-58, 36.631% id in 647 aa. Lack of similarity at the N-terminus in comparison to other proteins. CDS contains additional internal amino acids, residues 560 to 625, in comparison to Bacteriophage 186; phage replication protein 1119259 6986789 VSAL_I1020 Aliivibrio salmonicida LFI1238 phage replication protein YP_002262509.1 1116746 D 316275 CDS YP_002262510.1 209694582 6986790 1119368..1119751 1 NC_011312.1 phage protein 1119751 6986790 VSAL_I1021 Aliivibrio salmonicida LFI1238 phage protein YP_002262510.1 1119368 D 316275 CDS YP_002262511.1 209694583 6986791 1119972..1120886 1 NC_011312.1 membrane protein, phage gene 1120886 6986791 VSAL_I1022 Aliivibrio salmonicida LFI1238 membrane protein, phage gene YP_002262511.1 1119972 D 316275 CDS YP_002262512.1 209694584 6986792 1121087..1121341 1 NC_011312.1 Expression may be Fur regulated; phage protein 1121341 6986792 VSAL_I1023 Aliivibrio salmonicida LFI1238 phage protein YP_002262512.1 1121087 D 316275 CDS YP_002262513.1 209694585 6986793 complement(1121338..1121802) 1 NC_011312.1 Similar to Vibrio phage K139 orf13 orf13. UniProt:Q8W755 (EMBL:AF125163) (83 aa) fasta scores: E()=5.2e-14, 56.098% id in 82 aa; phage zinc-binding transcriptional activator 1121802 6986793 VSAL_I1024 Aliivibrio salmonicida LFI1238 phage zinc-binding transcriptional activator YP_002262513.1 1121338 R 316275 CDS YP_002262514.1 209694586 6986794 complement(1121868..1122902) 1 NC_011312.1 Similar to Vibrio phage K139 orf15 UniProt:Q8W753 (348 aa) fasta scores: E()=1.2e-85, 66.372% id in 339 aa; phage portal protein 1122902 6986794 VSAL_I1025 Aliivibrio salmonicida LFI1238 phage portal protein YP_002262514.1 1121868 R 316275 CDS YP_002262515.1 209694587 6986795 complement(1122899..1124671) 1 NC_011312.1 Similar to Vibrio phage K139 orf16 UniProt:Q8W752 (605 aa) fasta scores: E()=3e-143, 66.612% id in 605 aa; terminase, ATPase subunit 1124671 6986795 VSAL_I1026 Aliivibrio salmonicida LFI1238 terminase, ATPase subunit YP_002262515.1 1122899 R 316275 CDS YP_002262516.1 209694588 6986796 1124840..1125715 1 NC_011312.1 Similar to Vibrio phage K139 orf17 UniProt:Q8W751 (299 aa) fasta scores: E()=4e-41, 49.020% id in 306 aa; phage capsid scaffolding protein 1125715 6986796 VSAL_I1027 Aliivibrio salmonicida LFI1238 phage capsid scaffolding protein YP_002262516.1 1124840 D 316275 CDS YP_002262517.1 209694589 6986797 1125729..1126739 1 NC_011312.1 Similar to Vibrio phage K139 orf18 UniProt:Q8W750 (341 aa) fasta scores: E()=2e-52, 48.000% id in 300 aa; major capsid protein 1126739 6986797 VSAL_I1028 Aliivibrio salmonicida LFI1238 major capsid protein YP_002262517.1 1125729 D 316275 CDS YP_002262518.1 209694590 6986798 1126756..1127472 1 NC_011312.1 Similar to Vibrio phage K139 orf19 UniProt:Q8W749 (238 aa) fasta scores: E()=2.7e-49, 51.464% id in 239 aa; phage terminase, endonuclease subunit 1127472 6986798 VSAL_I1029 Aliivibrio salmonicida LFI1238 phage terminase, endonuclease subunit YP_002262518.1 1126756 D 316275 CDS YP_002262519.1 209694591 6986799 1127601..1127942 1 NC_011312.1 membrane protein, phage gene 1127942 6986799 VSAL_I1030 Aliivibrio salmonicida LFI1238 membrane protein, phage gene YP_002262519.1 1127601 D 316275 CDS YP_002262520.1 209694592 6986800 1127935..1128399 1 NC_011312.1 Similar to Vibrio phage K139 orf20 UniProt:Q8W748 (153 aa) fasta scores: E()=2.5e-26, 51.299% id in 154 aa; head completion/stabilization protein 1128399 6986800 VSAL_I1031 Aliivibrio salmonicida LFI1238 head completion/stabilization protein YP_002262520.1 1127935 D 316275 CDS YP_002262521.1 209694593 6986801 1128396..1128920 1 NC_011312.1 Similar to Vibrio phage K139 orf21 UniProt:Q8W747 (162 aa) fasta scores: E()=1.2e-15, 33.974% id in 156 aa; phage protein 1128920 6986801 VSAL_I1032 Aliivibrio salmonicida LFI1238 phage protein YP_002262521.1 1128396 D 316275 CDS YP_002262522.1 209694594 6986803 1129637..1130749 1 NC_011312.1 Similar to Haemophilus phage HP2 orf23 UniProt:Q94MY9 (376 aa) fasta scores: E()=9.3e-68, 50.667% id in 375 aa; tail sheat protein 1130749 6986803 VSAL_I1034 Aliivibrio salmonicida LFI1238 tail sheat protein YP_002262522.1 1129637 D 316275 CDS YP_002262523.1 209694595 6986804 1130749..1131204 1 NC_011312.1 Similar to Vibrio phage K139 orf25 orf25. UniProt:Q8W743 (EMBL:AF125163) (152 aa) fasta scores: E()=8.2e-27, 55.782% id in 147 aa; tail tube protein 1131204 6986804 VSAL_I1035 Aliivibrio salmonicida LFI1238 tail tube protein YP_002262523.1 1130749 D 316275 CDS YP_002262524.1 209694596 6986805 1131216..1131431 1 NC_011312.1 Similar to Vibrio phage K139 orf26 orf26. UniProt:Q8W742 (EMBL:AF125163) (69 aa) fasta scores: E()=5.9e-09, 50.794% id in 63 aa; rRNA transcription initiatior protein, phage gene 1131431 6986805 VSAL_I1036 Aliivibrio salmonicida LFI1238 rRNA transcription initiatior protein, phage gene YP_002262524.1 1131216 D 316275 CDS YP_002262525.1 209694597 6986806 1131428..1131850 1 NC_011312.1 phage protein 1131850 6986806 VSAL_I1037 Aliivibrio salmonicida LFI1238 phage protein YP_002262525.1 1131428 D 316275 CDS YP_002262526.1 209694598 6986807 1131853..1132098 1 NC_011312.1 phage protein 1132098 6986807 VSAL_I1038 Aliivibrio salmonicida LFI1238 phage protein YP_002262526.1 1131853 D 316275 CDS YP_002262527.1 209694599 6986808 1132101..1132340 1 NC_011312.1 protein, phage gene 1132340 6986808 VSAL_I1039 Aliivibrio salmonicida LFI1238 protein, phage gene YP_002262527.1 1132101 D 316275 CDS YP_002262528.1 209694600 6986809 1132337..1132600 1 NC_011312.1 Similar to Haemophilus phage HP2 orf26. UniProt:Q775G2 (EMBL:AY027935) (102 aa) fasta scores: E()=4e-05, 32.927% id in 82 aa overlap; query 5-86; subject 21-102; phage protein; orf30 1132600 6986809 VSAL_I1040 Aliivibrio salmonicida LFI1238 orf30 YP_002262528.1 1132337 D 316275 CDS YP_002262529.1 209694601 6986810 1132788..1134902 1 NC_011312.1 Similar to Vibrio phage K139 orf31 orf31. UniProt:Q8W737 (EMBL:AF125163) (605 aa) fasta scores: E()=3.2e-101, 55.500% id in 600 aa; tail length determinator 1134902 6986810 VSAL_I1041 Aliivibrio salmonicida LFI1238 tail length determinator YP_002262529.1 1132788 D 316275 CDS YP_002262530.1 209694602 6986811 1134899..1135225 1 NC_011312.1 Similar to Vibrio phage K139 orf32 orf32. UniProt:Q8W736 (EMBL:AF125163) (110 aa) fasta scores: E()=5.3e-13, 54.167% id in 96 aa; phage protein 1135225 6986811 VSAL_I1042 Aliivibrio salmonicida LFI1238 phage protein YP_002262530.1 1134899 D 316275 CDS YP_002262531.1 209694603 6986812 1135222..1136406 1 NC_011312.1 Similar to Vibrio phage K139 orf33 orf33. UniProt:Q8W735 (EMBL:AF125163) (399 aa) fasta scores: E()=1e-75, 51.139% id in 395 aa; phage protein 1136406 6986812 VSAL_I1043 Aliivibrio salmonicida LFI1238 phage protein YP_002262531.1 1135222 D 316275 CDS YP_002262532.1 209694604 6986813 1136399..1136989 1 NC_011312.1 Similar to Vibrio phage K139 orf34 orf34. UniProt:Q8W734 (EMBL:AF125163) (219 aa) fasta scores: E()=1.3e-35, 50.000% id in 184 aa; phage protein 1136989 6986813 VSAL_I1044 Aliivibrio salmonicida LFI1238 phage protein YP_002262532.1 1136399 D 316275 CDS YP_002262533.1 209694605 6986814 1136992..1139064 1 NC_011312.1 Similar to Bacteriophage HP1 tail fiber protein (orf31). UniProt:P51735 (EMBL:BH24159) (925 aa) fasta scores: E()=2.2e-35, 28.483% id in 646 aa; tail fiber protein 1139064 6986814 VSAL_I1045 Aliivibrio salmonicida LFI1238 tail fiber protein YP_002262533.1 1136992 D 316275 CDS YP_002262534.1 209694606 6986815 1139064..1139507 1 NC_011312.1 phage protein 1139507 6986815 VSAL_I1046 Aliivibrio salmonicida LFI1238 phage protein YP_002262534.1 1139064 D 316275 CDS YP_002262535.1 209694607 6986816 1139507..1140400 1 NC_011312.1 Similar to Vibrio phage K139 orf37. UniProt:Q8W731 (EMBL:AF125163) (297 aa) fasta scores: E()=1e-41, 41.497% id in 294 aa; phage protein 1140400 6986816 VSAL_I1047 Aliivibrio salmonicida LFI1238 phage protein YP_002262535.1 1139507 D 316275 CDS YP_002262536.1 209694608 6986817 1140397..1140945 1 NC_011312.1 Similar to Yersinia pseudotuberculosis hypothetical protein. UniProt:Q666T6 (EMBL:BX936398) (184 aa) fasta scores: E()=1.4e-14, 38.926% id in 149 aa; CDS is extended at the C-terminus in comparison to orthologues; phage protein 1140945 6986817 VSAL_I1048 Aliivibrio salmonicida LFI1238 phage protein YP_002262536.1 1140397 D 316275 CDS YP_002262537.1 209694609 6986818 1140942..1142567 1 NC_011312.1 Similar to Vibrio phage K139 orf39 orf39. UniProt:Q8W729 (EMBL:AF125163) (543 aa) fasta scores: E()=2.6e-82, 47.162% id in 458 aa; phage protein 1142567 6986818 VSAL_I1049 Aliivibrio salmonicida LFI1238 phage protein YP_002262537.1 1140942 D 316275 CDS YP_002262538.1 209694610 6986819 1142569..1142766 1 NC_011312.1 phage protein 1142766 6986819 VSAL_I1050 Aliivibrio salmonicida LFI1238 phage protein YP_002262538.1 1142569 D 316275 CDS YP_002262539.1 209694611 6986820 1143101..1143982 1 NC_011312.1 transposase 1143982 6986820 VSAL_I1051 Aliivibrio salmonicida LFI1238 transposase YP_002262539.1 1143101 D 316275 CDS YP_002262540.1 209694612 6986821 1144549..1144848 1 NC_011312.1 hypothetical protein 1144848 6986821 VSAL_I1052 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262540.1 1144549 D 316275 CDS YP_002262541.1 209694613 6986822 1145099..1145938 1 NC_011312.1 2OG-Fe(II) oxygenase 1145938 6986822 VSAL_I1053 Aliivibrio salmonicida LFI1238 2OG-Fe(II) oxygenase YP_002262541.1 1145099 D 316275 CDS YP_002262542.1 209694614 6986823 1146101..1146595 1 NC_011312.1 acetyltransferase 1146595 6986823 VSAL_I1054 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002262542.1 1146101 D 316275 CDS YP_002262543.1 209694615 6986824 1146709..1147524 1 NC_011312.1 phosphorylase 1147524 6986824 VSAL_I1055 Aliivibrio salmonicida LFI1238 phosphorylase YP_002262543.1 1146709 D 316275 CDS YP_002262544.1 209694616 6988143 complement(1147951..1148658) 1 NC_011312.1 carbonic anhydrase 1148658 cah 6988143 cah Aliivibrio salmonicida LFI1238 carbonic anhydrase YP_002262544.1 1147951 R 316275 CDS YP_002262545.1 209694617 6988145 complement(1149433..1151238) 1 NC_011312.1 sulfatase 1151238 6988145 VSAL_I1057 Aliivibrio salmonicida LFI1238 sulfatase YP_002262545.1 1149433 R 316275 CDS YP_002262546.1 209694618 6986826 complement(1151258..1151485) 1 NC_011312.1 hypothetical protein 1151485 6986826 VSAL_I1058 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262546.1 1151258 R 316275 CDS YP_002262547.1 209694619 6986827 1151562..1152578 1 NC_011312.1 nucleoid-associated protein NdpA 1152578 ndpA 6986827 ndpA Aliivibrio salmonicida LFI1238 nucleoid-associated protein NdpA YP_002262547.1 1151562 D 316275 CDS YP_002262548.1 209694620 6988889 1152720..1153910 1 NC_011312.1 Expression may be stress-induced and regulated by Fur; hypothetical protein 1153910 6988889 VSAL_I1060 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262548.1 1152720 D 316275 CDS YP_002262549.1 209694621 6986828 complement(1154092..1155579) 1 NC_011312.1 transposase 1155579 6986828 VSAL_I1061 Aliivibrio salmonicida LFI1238 transposase YP_002262549.1 1154092 R 316275 CDS YP_002262550.1 209694622 6986829 complement(1155651..1155998) 1 NC_011312.1 transposase 1155998 6986829 VSAL_I1062 Aliivibrio salmonicida LFI1238 transposase YP_002262550.1 1155651 R 316275 CDS YP_002262551.1 209694623 6986830 1156366..1157490 1 NC_011312.1 ribonuclease D (rnase d) 1157490 rnd 6986830 rnd Aliivibrio salmonicida LFI1238 ribonuclease D (rnase d) YP_002262551.1 1156366 D 316275 CDS YP_002262552.1 209694624 6989129 complement(1157566..1157826) 1 NC_011312.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1157826 minE 6989129 minE Aliivibrio salmonicida LFI1238 cell division topological specificity factor MinE YP_002262552.1 1157566 R 316275 CDS YP_002262553.1 209694625 6988807 complement(1157829..1158641) 1 NC_011312.1 septum site-determining protein MinD (cell division inhibitor MinD) 1158641 minD 6988807 minD Aliivibrio salmonicida LFI1238 septum site-determining protein MinD (cell division inhibitor MinD) YP_002262553.1 1157829 R 316275 CDS YP_002262554.1 209694626 6988806 complement(1158665..1159330) 1 NC_011312.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1159330 minC 6988806 minC Aliivibrio salmonicida LFI1238 septum formation inhibitor YP_002262554.1 1158665 R 316275 CDS YP_002262555.1 209694627 6988805 1159542..1159823 1 NC_011312.1 hypothetical protein 1159823 6988805 VSAL_I1068 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262555.1 1159542 D 316275 CDS YP_002262556.1 209694628 6986831 1159825..1160799 1 NC_011312.1 hypothetical protein 1160799 6986831 VSAL_I1069 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262556.1 1159825 D 316275 CDS YP_002262557.1 209694629 6986832 complement(1160921..1162963) 1 NC_011312.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 1162963 mnmC 6986832 mnmC Aliivibrio salmonicida LFI1238 5-methylaminomethyl-2-thiouridine methyltransferase YP_002262557.1 1160921 R 316275 CDS YP_002262558.1 209694630 6986833 1163084..1164295 1 NC_011312.1 3-ketoacyl-ACP synthase FabB 1164295 fabB 6986833 fabB Aliivibrio salmonicida LFI1238 3-ketoacyl-ACP synthase FabB YP_002262558.1 1163084 D 316275 CDS YP_002262559.1 209694631 6988464 1164455..1165585 1 NC_011312.1 Expression may be stress-induced; erythronate-4-phosphate dehydrogenase 1165585 pdxB 6988464 pdxB Aliivibrio salmonicida LFI1238 erythronate-4-phosphate dehydrogenase YP_002262559.1 1164455 D 316275 CDS YP_002262560.1 209694632 6988954 1165585..1166598 1 NC_011312.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1166598 asd 6988954 asd Aliivibrio salmonicida LFI1238 aspartate-semialdehyde dehydrogenase YP_002262560.1 1165585 D 316275 CDS YP_002262561.1 209694633 6988268 1166802..1170623 1 NC_011312.1 hypothetical protein 1170623 6988268 VSAL_I1074 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262561.1 1166802 D 316275 CDS YP_002262562.1 209694634 6986834 1170713..1171501 1 NC_011312.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1171501 truA 6986834 truA Aliivibrio salmonicida LFI1238 tRNA pseudouridine synthase A YP_002262562.1 1170713 D 316275 CDS YP_002262563.1 209694635 6989335 1171682..1172572 1 NC_011312.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1172572 accD 6989335 accD Aliivibrio salmonicida LFI1238 acetyl-CoA carboxylase subunit beta YP_002262563.1 1171682 D 316275 CDS YP_002262564.1 209694636 6988212 1172671..1173951 1 NC_011312.1 FolC bifunctional protein (tetrahydrofolate synthase) (folylpolyglutamate synthase) 1173951 folC 6988212 folC Aliivibrio salmonicida LFI1238 FolC bifunctional protein (tetrahydrofolate synthase) (folylpolyglutamate synthase) YP_002262564.1 1172671 D 316275 CDS YP_002262565.1 209694637 6988554 1173961..1174530 1 NC_011312.1 sporulation and cell division protein 1174530 6988554 VSAL_I1078 Aliivibrio salmonicida LFI1238 sporulation and cell division protein YP_002262565.1 1173961 D 316275 CDS YP_002262566.1 209694638 6986835 1174592..1175083 1 NC_011312.1 colicin V production protein (protein DedE) 1175083 cvpA 6986835 cvpA Aliivibrio salmonicida LFI1238 colicin V production protein (protein DedE) YP_002262566.1 1174592 D 316275 CDS YP_002262567.1 209694639 6988363 1175118..1176632 1 NC_011312.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1176632 purF 6988363 purF Aliivibrio salmonicida LFI1238 amidophosphoribosyltransferase YP_002262567.1 1175118 D 316275 CDS YP_002262568.1 209694640 6989038 complement(1176715..1177590) 1 NC_011312.1 transcriptional regulator AphB 1177590 aphB 6989038 aphB Aliivibrio salmonicida LFI1238 transcriptional regulator AphB YP_002262568.1 1176715 R 316275 CDS YP_002262569.1 209694641 6988242 1177829..1178932 1 NC_011312.1 response regulator 1178932 6988242 VSAL_I1082 Aliivibrio salmonicida LFI1238 response regulator YP_002262569.1 1177829 D 316275 CDS YP_002262570.1 209694642 6986836 1178975..1179367 1 NC_011312.1 Possible alternative translational start site after codon 9; hypothetical protein 1179367 6986836 VSAL_I1083 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262570.1 1178975 D 316275 CDS YP_002262571.1 209694643 6986837 1179452..1179997 1 NC_011312.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1179997 apt 6986837 apt Aliivibrio salmonicida LFI1238 adenine phosphoribosyltransferase YP_002262571.1 1179452 D 316275 CDS YP_002262572.1 209694644 6988243 1180101..1182245 1 NC_011312.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1182245 dnaX 6988243 dnaX Aliivibrio salmonicida LFI1238 DNA polymerase III subunits gamma and tau YP_002262572.1 1180101 D 316275 CDS YP_002262573.1 209694645 6988421 1182334..1182669 1 NC_011312.1 hypothetical protein 1182669 6988421 VSAL_I1086 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262573.1 1182334 D 316275 CDS YP_002262574.1 209694646 6986838 1182772..1183374 1 NC_011312.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1183374 recR 6986838 recR Aliivibrio salmonicida LFI1238 recombination protein RecR YP_002262574.1 1182772 D 316275 CDS YP_002262575.1 209694647 6989085 complement(1183346..1183906) 1 NC_011312.1 integral membrane protein 1183906 6989085 VSAL_I1088 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002262575.1 1183346 R 316275 CDS YP_002262576.1 209694648 6986840 complement(1184217..1185083) 1 NC_011312.1 transposase 1185083 6986840 VSAL_I1090 Aliivibrio salmonicida LFI1238 transposase YP_002262576.1 1184217 R 316275 CDS YP_002262577.1 209694649 6986841 complement(1185629..1186975) 1 NC_011312.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 1186975 6986841 VSAL_I1091 Aliivibrio salmonicida LFI1238 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_002262577.1 1185629 R 316275 CDS YP_002262578.1 209694650 6986842 1187116..1188543 1 NC_011312.1 Expression may be regulated by Fur; coniferyl aldehyde dehydrogenase 1188543 calB 6986842 calB Aliivibrio salmonicida LFI1238 coniferyl aldehyde dehydrogenase YP_002262578.1 1187116 D 316275 CDS YP_002262579.1 209694651 6988300 1188622..1189506 1 NC_011312.1 integral membrane protein 1189506 6988300 VSAL_I1093 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002262579.1 1188622 D 316275 CDS YP_002262580.1 209694652 6986843 complement(1189612..1190760) 1 NC_011312.1 iron-containing alcohol dehydrogenase 1190760 6986843 VSAL_I1094 Aliivibrio salmonicida LFI1238 iron-containing alcohol dehydrogenase YP_002262580.1 1189612 R 316275 CDS YP_002262581.1 209694653 6986844 1190957..1191841 1 NC_011312.1 AraC family transcriptional regulator 1191841 6986844 VSAL_I1095 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002262581.1 1190957 D 316275 CDS YP_002262582.1 209694654 6986845 1191884..1192417 1 NC_011312.1 hypothetical protein 1192417 6986845 VSAL_I1096 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262582.1 1191884 D 316275 CDS YP_002262583.1 209694655 6986846 complement(1192485..1193699) 1 NC_011312.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 1193699 6986846 VSAL_I1097 Aliivibrio salmonicida LFI1238 aminotransferase AlaT YP_002262583.1 1192485 R 316275 CDS YP_002262584.1 209694656 6986847 1194026..1195348 1 NC_011312.1 Expression may be stress-induced; menaquinone-specific isochorismate synthase 1195348 menF 6986847 menF Aliivibrio salmonicida LFI1238 menaquinone-specific isochorismate synthase YP_002262584.1 1194026 D 316275 CDS YP_002262585.1 209694657 6988786 1195345..1197078 1 NC_011312.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 1197078 menD 6988786 menD Aliivibrio salmonicida LFI1238 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_002262585.1 1195345 D 316275 CDS YP_002262586.1 209694658 6988784 1197062..1197856 1 NC_011312.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB 1197856 6988784 VSAL_I1100 Aliivibrio salmonicida LFI1238 acyl-CoA thioester hydrolase YfbB YP_002262586.1 1197062 D 316275 CDS YP_002262587.1 209694659 6986848 1197861..1198727 1 NC_011312.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1198727 menB 6986848 menB Aliivibrio salmonicida LFI1238 naphthoate synthase YP_002262587.1 1197861 D 316275 CDS YP_002262588.1 209694660 6988782 1198806..1199780 1 NC_011312.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 1199780 menC 6988782 menC Aliivibrio salmonicida LFI1238 O-succinylbenzoate synthase YP_002262588.1 1198806 D 316275 CDS YP_002262589.1 209694661 6988783 1199768..1201165 1 NC_011312.1 O-succinylbenzoic acid--CoA ligase 1201165 menE 6988783 menE Aliivibrio salmonicida LFI1238 O-succinylbenzoic acid--CoA ligase YP_002262589.1 1199768 D 316275 CDS YP_002262590.1 209694662 6986849 1201850..1202164 1 NC_011312.1 transposase 1202164 6986849 VSAL_I1105 Aliivibrio salmonicida LFI1238 transposase YP_002262590.1 1201850 D 316275 CDS YP_002262591.1 209694663 6986853 complement(1206727..1207227) 1 NC_011312.1 hypothetical protein 1207227 6986853 VSAL_I1109 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262591.1 1206727 R 316275 CDS YP_002262592.1 209694664 6988146 1207732..1208481 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 1208481 6988146 VSAL_I1110 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262592.1 1207732 D 316275 CDS YP_002262593.1 209694665 6986856 complement(1209043..1209696) 1 NC_011312.1 Similar to Pseudomonas aeruginosa Serine/threonine phosphoprotein phosphatase Stp1 UniProt:Q9I355 (242 aa) fasta scores: E()=6.2e-18, 36.283% id in 226 aa. The CDS appears to have a 16 amino acid residue deletion after codon 133 compared with Pseudomonas aeruginosa Stp1; serine/threonine phosphoprotein phosphatase 1209696 vasL 6986856 vasL Aliivibrio salmonicida LFI1238 serine/threonine phosphoprotein phosphatase YP_002262593.1 1209043 R 316275 CDS YP_002262594.1 209694666 6989389 complement(1213243..1214070) 1 NC_011312.1 type VI secretion protein VasF 1214070 vasF 6989389 vasF Aliivibrio salmonicida LFI1238 type VI secretion protein VasF YP_002262594.1 1213243 R 316275 CDS YP_002262595.1 209694667 6989381 complement(1214072..1215394) 1 NC_011312.1 type VI secretion protein VasE 1215394 vasE 6989381 vasE Aliivibrio salmonicida LFI1238 type VI secretion protein VasE YP_002262595.1 1214072 R 316275 CDS YP_002262596.1 209694668 6989379 complement(1215406..1215894) 1 NC_011312.1 type VI secretion protein VasD 1215894 vasD 6989379 vasD Aliivibrio salmonicida LFI1238 type VI secretion protein VasD YP_002262596.1 1215406 R 316275 CDS YP_002262597.1 209694669 6989377 complement(1215928..1217289) 1 NC_011312.1 type VI secretion protein VasC 1217289 vasC 6989377 vasC Aliivibrio salmonicida LFI1238 type VI secretion protein VasC YP_002262597.1 1215928 R 316275 CDS YP_002262598.1 209694670 6989386 complement(1218905..1221523) 1 NC_011312.1 chaperone ClpB 1221523 vasG 6989386 vasG Aliivibrio salmonicida LFI1238 chaperone ClpB YP_002262598.1 1218905 R 316275 CDS YP_002262599.1 209694671 6989383 complement(1221520..1222449) 1 NC_011312.1 Possible alternative translational start site 99 nucleotides upstream present start; type VI secretion protein VasG 1222449 vasG 6989383 vasG Aliivibrio salmonicida LFI1238 type VI secretion protein VasG YP_002262599.1 1221520 R 316275 CDS YP_002262600.1 209694672 6989384 complement(1222512..1224263) 1 NC_011312.1 type VI secretion protein VasA 1224263 vasA 6989384 vasA Aliivibrio salmonicida LFI1238 type VI secretion protein VasA YP_002262600.1 1222512 R 316275 CDS YP_002262601.1 209694673 6989372 complement(1224260..1224685) 1 NC_011312.1 type VI secretion protein VasS 1224685 vasS 6989372 vasS Aliivibrio salmonicida LFI1238 type VI secretion protein VasS YP_002262601.1 1224260 R 316275 CDS YP_002262602.1 209694674 6989397 complement(1224773..1226248) 1 NC_011312.1 type VI secretion protein VasR 1226248 vasR 6989397 vasR Aliivibrio salmonicida LFI1238 type VI secretion protein VasR YP_002262602.1 1224773 R 316275 CDS YP_002262603.1 209694675 6989394 complement(1226252..1226746) 1 NC_011312.1 type VI secretion protein VasQ 1226746 vasQ 6989394 vasQ Aliivibrio salmonicida LFI1238 type VI secretion protein VasQ YP_002262603.1 1226252 R 316275 CDS YP_002262604.1 209694676 6989392 complement(1226761..1228302) 1 NC_011312.1 Weakly similar to Vibrio cholerae vasJ. Expression may be regulated by Fur; type VI secretion protein VasJ 1228302 vasJ 6989392 vasJ Aliivibrio salmonicida LFI1238 type VI secretion protein VasJ YP_002262604.1 1226761 R 316275 CDS YP_002262605.1 209694677 6989387 complement(1228554..1228763) 1 NC_011312.1 hypothetical protein 1228763 6989387 VSAL_I1126 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262605.1 1228554 R 316275 CDS YP_002262606.1 209694678 6986857 complement(1228750..1229310) 1 NC_011312.1 primosomal replication protein N'' 1229310 6986857 VSAL_I1127 Aliivibrio salmonicida LFI1238 primosomal replication protein N'' YP_002262606.1 1228750 R 316275 CDS YP_002262607.1 209694679 6986858 complement(1229341..1230111) 1 NC_011312.1 membrane protein 1230111 6986858 VSAL_I1128 Aliivibrio salmonicida LFI1238 membrane protein YP_002262607.1 1229341 R 316275 CDS YP_002262608.1 209694680 6986859 complement(1230178..1232262) 1 NC_011312.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1232262 dinG 6986859 dinG Aliivibrio salmonicida LFI1238 ATP-dependent DNA helicase DinG YP_002262608.1 1230178 R 316275 CDS YP_002262609.1 209694681 6986861 1233860..1234483 1 NC_011312.1 hypothetical protein 1234483 6986861 VSAL_I1131 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262609.1 1233860 D 316275 CDS YP_002262610.1 209694682 6986862 1234971..1235969 1 NC_011312.1 outer membrane protein 1235969 6986862 VSAL_I1132 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002262610.1 1234971 D 316275 CDS YP_002262611.1 209694683 6986863 1236478..1237374 1 NC_011312.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1237374 hisG 6986863 hisG Aliivibrio salmonicida LFI1238 ATP phosphoribosyltransferase YP_002262611.1 1236478 D 316275 CDS YP_002262612.1 209694684 6988665 1237380..1238675 1 NC_011312.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1238675 hisD 6988665 hisD Aliivibrio salmonicida LFI1238 histidinol dehydrogenase YP_002262612.1 1237380 D 316275 CDS YP_002262613.1 209694685 6988663 1238690..1239730 1 NC_011312.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1239730 hisC 6988663 hisC Aliivibrio salmonicida LFI1238 histidinol-phosphate aminotransferase YP_002262613.1 1238690 D 316275 CDS YP_002262614.1 209694686 6988662 1239808..1240881 1 NC_011312.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1240881 hisB 6988662 hisB Aliivibrio salmonicida LFI1238 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_002262614.1 1239808 D 316275 CDS YP_002262615.1 209694687 6988661 1240890..1241504 1 NC_011312.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1241504 hisH 6988661 hisH Aliivibrio salmonicida LFI1238 imidazole glycerol phosphate synthase subunit HisH YP_002262615.1 1240890 D 316275 CDS YP_002262616.1 209694688 6988666 1241619..1242356 1 NC_011312.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1242356 hisA 6988666 hisA Aliivibrio salmonicida LFI1238 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_002262616.1 1241619 D 316275 CDS YP_002262617.1 209694689 6988660 1242338..1243111 1 NC_011312.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1243111 hisF 6988660 hisF Aliivibrio salmonicida LFI1238 imidazole glycerol phosphate synthase subunit HisF YP_002262617.1 1242338 D 316275 CDS YP_002262618.1 209694690 6988664 1243108..1243728 1 NC_011312.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 1243728 hisI 6988664 hisI Aliivibrio salmonicida LFI1238 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_002262618.1 1243108 D 316275 CDS YP_002262619.1 209694691 6988667 1243866..1244357 1 NC_011312.1 V10 pilin 1244357 6988667 VSAL_I1141 Aliivibrio salmonicida LFI1238 V10 pilin YP_002262619.1 1243866 D 316275 CDS YP_002262620.1 209694692 6986864 1244482..1245168 1 NC_011312.1 RNA psedouridine synthase 1245168 6986864 VSAL_I1142 Aliivibrio salmonicida LFI1238 RNA psedouridine synthase YP_002262620.1 1244482 D 316275 CDS YP_002262621.1 209694693 6986865 1245165..1246130 1 NC_011312.1 hypothetical protein 1246130 6986865 VSAL_I1143 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262621.1 1245165 D 316275 CDS YP_002262622.1 209694694 6986866 complement(1246208..1246606) 1 NC_011312.1 lipoprotein 1246606 6986866 VSAL_I1144 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262622.1 1246208 R 316275 CDS YP_002262623.1 209694695 6986867 complement(1246625..1246927) 1 NC_011312.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1246927 6986867 VSAL_I1145 Aliivibrio salmonicida LFI1238 YciI-like protein YP_002262623.1 1246625 R 316275 CDS YP_002262624.1 209694696 6986868 complement(1247050..1247472) 1 NC_011312.1 acyl-CoA thioester hydrolase (p14 protein) 1247472 yciA 6986868 yciA Aliivibrio salmonicida LFI1238 acyl-CoA thioester hydrolase (p14 protein) YP_002262624.1 1247050 R 316275 CDS YP_002262625.1 209694697 6989425 complement(1247571..1248116) 1 NC_011312.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1248116 ispZ 6989425 ispZ Aliivibrio salmonicida LFI1238 intracellular septation protein A YP_002262625.1 1247571 R 316275 CDS YP_002262626.1 209694698 6986869 complement(1249890..1250696) 1 NC_011312.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1250696 trpA 6986869 trpA Aliivibrio salmonicida LFI1238 tryptophan synthase subunit alpha YP_002262626.1 1249890 R 316275 CDS YP_002262627.1 209694699 6989326 complement(1250696..1251886) 1 NC_011312.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1251886 trpB 6989326 trpB Aliivibrio salmonicida LFI1238 tryptophan synthase subunit beta YP_002262627.1 1250696 R 316275 CDS YP_002262628.1 209694700 6989327 complement(1251897..1253309) 1 NC_011312.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1253309 trpC 6989327 trpC Aliivibrio salmonicida LFI1238 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_002262628.1 1251897 R 316275 CDS YP_002262629.1 209694701 6989328 complement(1253315..1254322) 1 NC_011312.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1254322 trpD 6989328 trpD Aliivibrio salmonicida LFI1238 anthranilate phosphoribosyltransferase YP_002262629.1 1253315 R 316275 CDS YP_002262630.1 209694702 6989329 complement(1254333..1254941) 1 NC_011312.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1254941 trpG 6989329 trpG Aliivibrio salmonicida LFI1238 anthranilate synthase component II YP_002262630.1 1254333 R 316275 CDS YP_002262631.1 209694703 6989331 complement(1254941..1256578) 1 NC_011312.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1256578 trpE 6989331 trpE Aliivibrio salmonicida LFI1238 anthranilate synthase component I YP_002262631.1 1254941 R 316275 CDS YP_002262632.1 209694704 6989330 1256941..1257786 1 NC_011312.1 hypothetical protein 1257786 6989330 VSAL_I1155 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262632.1 1256941 D 316275 CDS YP_002262633.1 209694705 6986870 1257859..1258479 1 NC_011312.1 hypothetical protein 1258479 6986870 VSAL_I1156 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262633.1 1257859 D 316275 CDS YP_002262634.1 209694706 6986871 complement(1258540..1261008) 1 NC_011312.1 autoinducer regulatory protein AinR 1261008 ainR 6986871 ainR Aliivibrio salmonicida LFI1238 autoinducer regulatory protein AinR YP_002262634.1 1258540 R 316275 CDS YP_002262635.1 209694707 6988227 complement(1261020..1262210) 1 NC_011312.1 autoinducer synthase 1262210 ainS 6988227 ainS Aliivibrio salmonicida LFI1238 autoinducer synthase YP_002262635.1 1261020 R 316275 CDS YP_002262636.1 209694708 6988228 1262544..1263608 1 NC_011312.1 ribosomal large subunit pseudouridine synthase B (rRNA pseudouridylate synthase B) 1263608 rluB 6988228 rluB Aliivibrio salmonicida LFI1238 ribosomal large subunit pseudouridine synthase B (rRNA pseudouridylate synthase B) YP_002262636.1 1262544 D 316275 CDS YP_002262637.1 209694709 6989109 complement(1263713..1264453) 1 NC_011312.1 Expression may be regulated by Fur; short chain dehydrogenase 1264453 6989109 VSAL_I1160 Aliivibrio salmonicida LFI1238 short chain dehydrogenase YP_002262637.1 1263713 R 316275 CDS YP_002262638.1 209694710 6986872 1264620..1265681 1 NC_011312.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 1265681 sohB 6986872 sohB Aliivibrio salmonicida LFI1238 periplasmic protease YP_002262638.1 1264620 D 316275 CDS YP_002262639.1 209694711 6989253 complement(1265754..1265999) 1 NC_011312.1 hypothetical protein 1265999 6989253 VSAL_I1162 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262639.1 1265754 R 316275 CDS YP_002262640.1 209694712 6986873 1266064..1266192 1 NC_011312.1 hypothetical protein 1266192 6986873 VSAL_I1163 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262640.1 1266064 D 316275 CDS YP_002262641.1 209694713 6986874 1266401..1269040 1 NC_011312.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1269040 topA 6986874 topA Aliivibrio salmonicida LFI1238 DNA topoisomerase I YP_002262641.1 1266401 D 316275 CDS YP_002262642.1 209694714 6986875 complement(1270324..1271517) 1 NC_011312.1 transposase 1271517 6986875 VSAL_I1166 Aliivibrio salmonicida LFI1238 transposase YP_002262642.1 1270324 R 316275 CDS YP_002262643.1 209694715 6989399 1272188..1272484 1 NC_011312.1 type VI secretion protein VasV-1, PAAR domain protein 1272484 vasV-1 6989399 vasV-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasV-1, PAAR domain protein YP_002262643.1 1272188 D 316275 CDS YP_002262644.1 209694716 6989400 1272880..1274265 1 NC_011312.1 Weakly similar to Rhizobium leguminosarum bv. trifolii ImpA UniProt:Q93ED3 (358 aa) fasta scores: E()=0.0033, 23.618% id in 398 aa. Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins. Expression may be regulated by Fur; type VI secretion protein VasJ-1 1274265 vasJ-1 6989400 vasJ-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasJ-1 YP_002262644.1 1272880 D 316275 CDS YP_002262645.1 209694717 6989388 1274426..1274818 1 NC_011312.1 hemolysin-coregulated protein Hcp-3 1274818 hcp-3 6989388 hcp-3 Aliivibrio salmonicida LFI1238 hemolysin-coregulated protein Hcp-3 YP_002262645.1 1274426 D 316275 CDS YP_002262646.1 209694718 6988639 1274890..1275399 1 NC_011312.1 Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins; type VI secretion protein VasQ-1 1275399 vasQ-1 6988639 vasQ-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasQ-1 YP_002262646.1 1274890 D 316275 CDS YP_002262647.1 209694719 6989393 1275399..1276880 1 NC_011312.1 Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins; type VI secretion protein VasRA-1 1276880 vasRA-1 6989393 vasRA-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasRA-1 YP_002262647.1 1275399 D 316275 CDS YP_002262648.1 209694720 6989395 1276930..1278291 1 NC_011312.1 Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins; type VI secretion protein VasRB-1 1278291 vasRB-1 6989395 vasRB-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasRB-1 YP_002262648.1 1276930 D 316275 CDS YP_002262649.1 209694721 6989396 1278288..1278710 1 NC_011312.1 type VI secretion protein VasS-1 1278710 vasS-1 6989396 vasS-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasS-1 YP_002262649.1 1278288 D 316275 CDS YP_002262650.1 209694722 6989398 1278703..1280484 1 NC_011312.1 Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins; type VI secretion protein VasA-1 1280484 vasA-1 6989398 vasA-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasA-1 YP_002262650.1 1278703 D 316275 CDS YP_002262651.1 209694723 6989373 1280466..1281449 1 NC_011312.1 type VI secretion protein VasB-1 1281449 vasB-1 6989373 vasB-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasB-1 YP_002262651.1 1280466 D 316275 CDS YP_002262652.1 209694724 6989374 1281456..1284074 1 NC_011312.1 chaperone ClpB-1 1284074 vasG-1 6989374 vasG-1 Aliivibrio salmonicida LFI1238 chaperone ClpB-1 YP_002262652.1 1281456 D 316275 CDS YP_002262653.1 209694725 6989385 1284155..1284313 1 NC_011312.1 type VI secretion protein VasV-1 1284313 vasV-1 6989385 vasV-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasV-1 YP_002262653.1 1284155 D 316275 CDS YP_002262654.1 209694726 6989401 1284376..1285320 1 NC_011312.1 Contains phospho-specific protein-protein interaction motif FHA; type VI secretion protein VasC-1 1285320 vasC-1 6989401 vasC-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasC-1 YP_002262654.1 1284376 D 316275 CDS YP_002262655.1 209694727 6989376 1285317..1285781 1 NC_011312.1 type VI secretion protein VasD-1 1285781 vasD-1 6989376 vasD-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasD-1 YP_002262655.1 1285317 D 316275 CDS YP_002262656.1 209694728 6989378 1285784..1287100 1 NC_011312.1 Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring temperature-dependent protein secretion proteins; type VI secretion protein VasE-1 1287100 vasE-1 6989378 vasE-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasE-1 YP_002262656.1 1285784 D 316275 CDS YP_002262657.1 209694729 6989380 1287108..1288232 1 NC_011312.1 type VI secretion protein VasF-1 1288232 vasF-1 6989380 vasF-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasF-1 YP_002262657.1 1287108 D 316275 CDS YP_002262658.1 209694730 6989390 1290747..1292054 1 NC_011312.1 transposase 1292054 6989390 VSAL_I1184 Aliivibrio salmonicida LFI1238 transposase YP_002262658.1 1290747 D 316275 CDS YP_002262659.1 209694731 6986877 1293110..1293727 1 NC_011312.1 Serine/Threonine protein kinase domain; type VI secretion protein VasX-1 1293727 vasX-1 6986877 vasX-1 Aliivibrio salmonicida LFI1238 type VI secretion protein VasX-1 YP_002262659.1 1293110 D 316275 CDS YP_002262660.1 209694732 6989402 complement(1293881..1294516) 1 NC_011312.1 lysine exporter protein 1294516 6989402 VSAL_I1186 Aliivibrio salmonicida LFI1238 lysine exporter protein YP_002262660.1 1293881 R 316275 CDS YP_002262661.1 209694733 6986878 1294730..1295566 1 NC_011312.1 Expression may be regulated by Fur; AraC family transcriptional regulator 1295566 6986878 VSAL_I1187 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002262661.1 1294730 D 316275 CDS YP_002262662.1 209694734 6986879 1295639..1296352 1 NC_011312.1 branched-chain amino acid transport protein 1296352 6986879 VSAL_I1188 Aliivibrio salmonicida LFI1238 branched-chain amino acid transport protein YP_002262662.1 1295639 D 316275 CDS YP_002262663.1 209694735 6986880 1296349..1296669 1 NC_011312.1 branched-chain amino acid transport protein 1296669 6986880 VSAL_I1189 Aliivibrio salmonicida LFI1238 branched-chain amino acid transport protein YP_002262663.1 1296349 D 316275 CDS YP_002262664.1 209694736 6986881 complement(1296672..1297286) 1 NC_011312.1 fumarylacetoacetate hydrolase 1297286 6986881 VSAL_I1190 Aliivibrio salmonicida LFI1238 fumarylacetoacetate hydrolase YP_002262664.1 1296672 R 316275 CDS YP_002262665.1 209694737 6986882 1297498..1298334 1 NC_011312.1 AraC family transcriptional regulator 1298334 6986882 VSAL_I1191 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002262665.1 1297498 D 316275 CDS YP_002262666.1 209694738 6986883 complement(1298406..1299218) 1 NC_011312.1 acetyltransferase 1299218 6986883 VSAL_I1192 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002262666.1 1298406 R 316275 CDS YP_002262667.1 209694739 6986884 1299497..1300726 1 NC_011312.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1300726 6986884 VSAL_I1193 Aliivibrio salmonicida LFI1238 peptidase T YP_002262667.1 1299497 D 316275 CDS YP_002262668.1 209694740 6986885 1300729..1302093 1 NC_011312.1 anaerobic C4-dicarboxylate transporter DcuC 1302093 dcuC 6986885 dcuC Aliivibrio salmonicida LFI1238 anaerobic C4-dicarboxylate transporter DcuC YP_002262668.1 1300729 D 316275 CDS YP_002262669.1 209694741 6988399 complement(1302210..1303466) 1 NC_011312.1 adenylosuccinate synthetase 1303466 6988399 VSAL_I1195 Aliivibrio salmonicida LFI1238 adenylosuccinate synthetase YP_002262669.1 1302210 R 316275 CDS YP_002262670.1 209694742 6986886 1303596..1304492 1 NC_011312.1 Similar to Escherichia coli HTH-type transcriptional regulator CynR (cyn operon transcriptiona activator) UniProt:P27111 (299 aa) blastp scores: E()=1e-10; LysR family transcriptional regulator 1304492 6986886 VSAL_I1196 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262670.1 1303596 D 316275 CDS YP_002262671.1 209694743 6986887 1304769..1306163 1 NC_011312.1 glutamate decarboxylase 1306163 gadB 6986887 gadB Aliivibrio salmonicida LFI1238 glutamate decarboxylase YP_002262671.1 1304769 D 316275 CDS YP_002262672.1 209694744 6988580 1306260..1308137 1 NC_011312.1 membrane permease 1308137 6988580 VSAL_I1198 Aliivibrio salmonicida LFI1238 membrane permease YP_002262672.1 1306260 D 316275 CDS YP_002262673.1 209694745 6986888 complement(1308200..1309102) 1 NC_011312.1 LysR family transcriptional regulator 1309102 6986888 VSAL_I1199 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262673.1 1308200 R 316275 CDS YP_002262674.1 209694746 6986889 1309250..1310101 1 NC_011312.1 pirin 1310101 6986889 VSAL_I1200 Aliivibrio salmonicida LFI1238 pirin YP_002262674.1 1309250 D 316275 CDS YP_002262675.1 209694747 6986890 1310164..1311135 1 NC_011312.1 IMP dehydrogenase/GMP reductase 1311135 6986890 VSAL_I1201 Aliivibrio salmonicida LFI1238 IMP dehydrogenase/GMP reductase YP_002262675.1 1310164 D 316275 CDS YP_002262676.1 209694748 6986891 1311319..1311840 1 NC_011312.1 Expression may be stress-induced; secreted protein Hcp-1 1311840 hcp 6986891 hcp Aliivibrio salmonicida LFI1238 secreted protein Hcp-1 YP_002262676.1 1311319 D 316275 CDS YP_002262677.1 209694749 6988638 complement(1311948..1312160) 1 NC_011312.1 hypothetical protein 1312160 6988638 VSAL_I1203 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262677.1 1311948 R 316275 CDS YP_002262678.1 209694750 6986892 1312374..1314290 1 NC_011312.1 C-terminal part is similar to Vibrio cholerae Lysophospholipase L2 LypA UniProt:Q56636 (338 aa) fasta scores: E()=1.5e-40, 38.554% id in 332 aa, and N-terminal part is similar to Escherichia coli Hypothetical protein UniProt:Q2M5U0 (357 aa) fasta scores: E()=4.4e-40, 38.170% id in 317 aa. From sequence comparisons the CDS appears as a fusion of two genes. The sequence has been checked and is believed to be correct; phospholipase 1314290 6986892 VSAL_I1204 Aliivibrio salmonicida LFI1238 phospholipase YP_002262678.1 1312374 D 316275 CDS YP_002262679.1 209694751 6986893 complement(1314395..1315882) 1 NC_011312.1 transposase 1315882 6986893 VSAL_I1205 Aliivibrio salmonicida LFI1238 transposase YP_002262679.1 1314395 R 316275 CDS YP_002262680.1 209694752 6986894 complement(1315953..1316300) 1 NC_011312.1 transposase 1316300 6986894 VSAL_I1206 Aliivibrio salmonicida LFI1238 transposase YP_002262680.1 1315953 R 316275 CDS YP_002262681.1 209694753 6986895 complement(1316297..1316611) 1 NC_011312.1 transposase 1316611 6986895 VSAL_I1207 Aliivibrio salmonicida LFI1238 transposase YP_002262681.1 1316297 R 316275 CDS YP_002262682.1 209694754 6986897 complement(1317707..1318588) 1 NC_011312.1 transposase 1318588 6986897 VSAL_I1209 Aliivibrio salmonicida LFI1238 transposase YP_002262682.1 1317707 R 316275 CDS YP_002262683.1 209694755 6986898 1318900..1319895 1 NC_011312.1 Expression may be stress-induced; NADP or NAD utilizing oxidoreductase 1319895 6986898 VSAL_I1210 Aliivibrio salmonicida LFI1238 NADP or NAD utilizing oxidoreductase YP_002262683.1 1318900 D 316275 CDS YP_002262684.1 209694756 6986899 1319907..1321394 1 NC_011312.1 extracellular solute-binding protein 1321394 6986899 VSAL_I1211 Aliivibrio salmonicida LFI1238 extracellular solute-binding protein YP_002262684.1 1319907 D 316275 CDS YP_002262685.1 209694757 6986900 complement(1321384..1322226) 1 NC_011312.1 AraC family transcriptional regulator 1322226 6986900 VSAL_I1212 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002262685.1 1321384 R 316275 CDS YP_002262686.1 209694758 6986901 complement(1322229..1322831) 1 NC_011312.1 transporter LysE family 1322831 6986901 VSAL_I1213 Aliivibrio salmonicida LFI1238 transporter LysE family YP_002262686.1 1322229 R 316275 CDS YP_002262687.1 209694759 6986902 1323029..1323775 1 NC_011312.1 Similar to Pseudomonas aeruginosa mobile metallo-beta-lactamase blaGIM-1 UniProt:Q704V1 (250 aa) fasta scores: E()=1.1e-33, 40.833% id in 240 aa; mobile metallo-beta-lactamase 1323775 6986902 VSAL_I1214 Aliivibrio salmonicida LFI1238 mobile metallo-beta-lactamase YP_002262687.1 1323029 D 316275 CDS YP_002262688.1 209694760 6986903 1323927..1324475 1 NC_011312.1 membrane protein 1324475 6986903 VSAL_I1215 Aliivibrio salmonicida LFI1238 membrane protein YP_002262688.1 1323927 D 316275 CDS YP_002262689.1 209694761 6986904 1324485..1324712 1 NC_011312.1 HTH-type transcriptional regulator 1324712 6986904 VSAL_I1216 Aliivibrio salmonicida LFI1238 HTH-type transcriptional regulator YP_002262689.1 1324485 D 316275 CDS YP_002262690.1 209694762 6986905 complement(1324786..1325310) 1 NC_011312.1 hypothetical protein 1325310 6986905 VSAL_I1217 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262690.1 1324786 R 316275 CDS YP_002262691.1 209694763 6986906 1325459..1326340 1 NC_011312.1 transposase 1326340 6986906 VSAL_I1218 Aliivibrio salmonicida LFI1238 transposase YP_002262691.1 1325459 D 316275 CDS YP_002262692.1 209694764 6986908 1326995..1328293 1 NC_011312.1 branched chain amino acid transport system II carrier protein 1328293 braB 6986908 braB Aliivibrio salmonicida LFI1238 branched chain amino acid transport system II carrier protein YP_002262692.1 1326995 D 316275 CDS YP_002262693.1 209694765 6988294 1328569..1329081 1 NC_011312.1 CDS is extended at the N-terminus in comparison to orthologues; membrane protein 1329081 6988294 VSAL_I1221 Aliivibrio salmonicida LFI1238 membrane protein YP_002262693.1 1328569 D 316275 CDS YP_002262694.1 209694766 6986909 complement(1329187..1331943) 1 NC_011312.1 outer membrane protein 1331943 6986909 VSAL_I1222 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002262694.1 1329187 R 316275 CDS YP_002262695.1 209694767 6986910 complement(1332155..1332745) 1 NC_011312.1 outer membrane protein A 1332745 6986910 VSAL_I1223 Aliivibrio salmonicida LFI1238 outer membrane protein A YP_002262695.1 1332155 R 316275 CDS YP_002262696.1 209694768 6986911 1333119..1334027 1 NC_011312.1 hypothetical protein 1334027 6986911 VSAL_I1224 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262696.1 1333119 D 316275 CDS YP_002262697.1 209694769 6986912 1334018..1334500 1 NC_011312.1 hypothetical protein 1334500 6986912 VSAL_I1225 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262697.1 1334018 D 316275 CDS YP_002262698.1 209694770 6986913 complement(1334541..1334876) 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 1334876 6986913 VSAL_I1226 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262698.1 1334541 R 316275 CDS YP_002262699.1 209694771 6986914 1335288..1336601 1 NC_011312.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 1336601 dcuB 6986914 dcuB Aliivibrio salmonicida LFI1238 anaerobic C4-dicarboxylate transporter YP_002262699.1 1335288 D 316275 CDS YP_002262700.1 209694772 6988396 1336870..1338675 1 NC_011312.1 hypothetical protein 1338675 6988396 VSAL_I1228 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262700.1 1336870 D 316275 CDS YP_002262701.1 209694773 6986915 1338909..1339841 1 NC_011312.1 immunogenic protein precursor 1339841 6986915 VSAL_I1229 Aliivibrio salmonicida LFI1238 immunogenic protein precursor YP_002262701.1 1338909 D 316275 CDS YP_002262702.1 209694774 6986916 1339925..1341223 1 NC_011312.1 DctM-like transport protein 1341223 6986916 VSAL_I1230 Aliivibrio salmonicida LFI1238 DctM-like transport protein YP_002262702.1 1339925 D 316275 CDS YP_002262703.1 209694775 6986917 1341374..1342474 1 NC_011312.1 extracellular solute-binding protein 1342474 6986917 VSAL_I1231 Aliivibrio salmonicida LFI1238 extracellular solute-binding protein YP_002262703.1 1341374 D 316275 CDS YP_002262704.1 209694776 6986918 complement(1342496..1343359) 1 NC_011312.1 LysR family transcriptional regulator 1343359 6986918 VSAL_I1232 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262704.1 1342496 R 316275 CDS YP_002262705.1 209694777 6986919 1343523..1344458 1 NC_011312.1 LysR family transcriptional regulator 1344458 6986919 VSAL_I1233 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262705.1 1343523 D 316275 CDS YP_002262706.1 209694778 6986920 1344745..1345950 1 NC_011312.1 sodium-dependent nucleoside transport protein 1345950 6986920 VSAL_I1234 Aliivibrio salmonicida LFI1238 sodium-dependent nucleoside transport protein YP_002262706.1 1344745 D 316275 CDS YP_002262707.1 209694779 6986921 1346513..1346605 1 NC_011312.1 hypothetical protein 1346605 6986921 VSAL_I1235 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262707.1 1346513 D 316275 CDS YP_002262708.1 209694780 6986922 1346621..1346725 1 NC_011312.1 hypothetical protein 1346725 6986922 VSAL_I1236 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262708.1 1346621 D 316275 CDS YP_002262709.1 209694781 6986923 1346786..1347229 1 NC_011312.1 membrane protein 1347229 6986923 VSAL_I1237 Aliivibrio salmonicida LFI1238 membrane protein YP_002262709.1 1346786 D 316275 CDS YP_002262710.1 209694782 6986924 1349281..1349595 1 NC_011312.1 transposase 1349595 6986924 VSAL_I1239 Aliivibrio salmonicida LFI1238 transposase YP_002262710.1 1349281 D 316275 CDS YP_002262711.1 209694783 6986925 1349592..1349939 1 NC_011312.1 transposase 1349939 6986925 VSAL_I1240 Aliivibrio salmonicida LFI1238 transposase YP_002262711.1 1349592 D 316275 CDS YP_002262712.1 209694784 6986927 complement(1351891..1352463) 1 NC_011312.1 TetR family transcriptional regulator 1352463 6986927 VSAL_I1242 Aliivibrio salmonicida LFI1238 TetR family transcriptional regulator YP_002262712.1 1351891 R 316275 CDS YP_002262713.1 209694785 6986928 complement(1352593..1353501) 1 NC_011312.1 amidase 1353501 6986928 VSAL_I1243 Aliivibrio salmonicida LFI1238 amidase YP_002262713.1 1352593 R 316275 CDS YP_002262714.1 209694786 6986929 complement(1353653..1354150) 1 NC_011312.1 peptidyl-prolyl cis-trans isomerase B 1354150 ppiB 6986929 ppiB Aliivibrio salmonicida LFI1238 peptidyl-prolyl cis-trans isomerase B YP_002262714.1 1353653 R 316275 CDS YP_002262715.1 209694787 6989000 complement(1354293..1355156) 1 NC_011312.1 beta-lactamase 1355156 ampC 6989000 ampC Aliivibrio salmonicida LFI1238 beta-lactamase YP_002262715.1 1354293 R 316275 CDS YP_002262716.1 209694788 6988233 complement(1355161..1356081) 1 NC_011312.1 hypothetical protein 1356081 6988233 VSAL_I1246 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262716.1 1355161 R 316275 CDS YP_002262717.1 209694789 6986930 complement(1356171..1356515) 1 NC_011312.1 hypothetical protein 1356515 6986930 VSAL_I1247 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262717.1 1356171 R 316275 CDS YP_002262718.1 209694790 6986931 complement(1356686..1357129) 1 NC_011312.1 Expression may be regulated by Fur; membrane protein 1357129 6986931 VSAL_I1248 Aliivibrio salmonicida LFI1238 membrane protein YP_002262718.1 1356686 R 316275 CDS YP_002262719.1 209694791 6986932 1357404..1357871 1 NC_011312.1 Expression may be regulated by Fur; membrane protein 1357871 6986932 VSAL_I1249 Aliivibrio salmonicida LFI1238 membrane protein YP_002262719.1 1357404 D 316275 CDS YP_002262720.1 209694792 6986933 1358066..1358929 1 NC_011312.1 LysR family transcriptional regulator 1358929 6986933 VSAL_I1250 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262720.1 1358066 D 316275 CDS YP_002262721.1 209694793 6986934 1359029..1359820 1 NC_011312.1 Possible alternative translational start site after codon 5; hypothetical protein 1359820 6986934 VSAL_I1251 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262721.1 1359029 D 316275 CDS YP_002262722.1 209694794 6986935 complement(1359896..1360810) 1 NC_011312.1 Similar to Escherichia coli Glycine cleavage system transcriptional activator GcvA UniProt:P0A9F6 (305 aa) fasta scores: E()=2.4e-19, 32.013% id in 303 aa; LysR family transcriptional regulator 1360810 6986935 VSAL_I1252 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262722.1 1359896 R 316275 CDS YP_002262723.1 209694795 6986936 1360921..1362912 1 NC_011312.1 X-Pro dipeptidyl-peptidase 1362912 6986936 VSAL_I1253 Aliivibrio salmonicida LFI1238 X-Pro dipeptidyl-peptidase YP_002262723.1 1360921 D 316275 CDS YP_002262724.1 209694796 6986937 1362933..1364456 1 NC_011312.1 Similar to Marinococcus halophilus Ectoine transporter EctM UniProt:Q6VTH4 (525 aa) fasta scores: E()=5e-45, 27.733% id in 494 aa; transporter BCCT family 1364456 6986937 VSAL_I1254 Aliivibrio salmonicida LFI1238 transporter BCCT family YP_002262724.1 1362933 D 316275 CDS YP_002262725.1 209694797 6986938 1364764..1365657 1 NC_011312.1 chaperone protein DnaJ 1365657 dnaJ 6986938 dnaJ Aliivibrio salmonicida LFI1238 chaperone protein DnaJ YP_002262725.1 1364764 D 316275 CDS YP_002262726.1 209694798 6988415 1365834..1366148 1 NC_011312.1 transposase 1366148 6988415 VSAL_I1256 Aliivibrio salmonicida LFI1238 transposase YP_002262726.1 1365834 D 316275 CDS YP_002262727.1 209694799 6986939 1366145..1366492 1 NC_011312.1 transposase 1366492 6986939 VSAL_I1257 Aliivibrio salmonicida LFI1238 transposase YP_002262727.1 1366145 D 316275 CDS YP_002262728.1 209694800 6986941 complement(1368340..1369143) 1 NC_011312.1 RpiR family transcriptional regulator 1369143 6986941 VSAL_I1259 Aliivibrio salmonicida LFI1238 RpiR family transcriptional regulator YP_002262728.1 1368340 R 316275 CDS YP_002262729.1 209694801 6986942 1369405..1370307 1 NC_011312.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 1370307 murQ 6986942 murQ Aliivibrio salmonicida LFI1238 N-acetylmuramic acid 6-phosphate etherase YP_002262729.1 1369405 D 316275 CDS YP_002262730.1 209694802 6986944 1371318..1371857 1 NC_011312.1 hypothetical protein 1371857 6986944 VSAL_I1262 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262730.1 1371318 D 316275 CDS YP_002262731.1 209694803 6986945 1371953..1372681 1 NC_011312.1 membrane protein 1372681 6986945 VSAL_I1263 Aliivibrio salmonicida LFI1238 membrane protein YP_002262731.1 1371953 D 316275 CDS YP_002262732.1 209694804 6986946 complement(1372689..1373696) 1 NC_011312.1 LysR family transcriptional regulator 1373696 6986946 VSAL_I1264 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262732.1 1372689 R 316275 CDS YP_002262733.1 209694805 6986948 1373986..1374300 1 NC_011312.1 transposase 1374300 6986948 VSAL_I1266 Aliivibrio salmonicida LFI1238 transposase YP_002262733.1 1373986 D 316275 CDS YP_002262734.1 209694806 6986951 complement(1376340..1377029) 1 NC_011312.1 hypothetical protein 1377029 6986951 VSAL_I1269 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262734.1 1376340 R 316275 CDS YP_002262735.1 209694807 6986952 complement(1377116..1379269) 1 NC_011312.1 Similar to Thermotoga maritima ribonucleotide reductase (B12-dependent) PDB 1XJE, Evalue 9e-56; ribonucleotide reductase 1379269 6986952 VSAL_I1270 Aliivibrio salmonicida LFI1238 ribonucleotide reductase YP_002262735.1 1377116 R 316275 CDS YP_002262736.1 209694808 6986953 1379624..1380955 1 NC_011312.1 Similar to caulobacter crescentus (caulobacter vibrioides) Response regulator PleD UniProt:Q9A5I5 (454 aa) fasta scores: E()=4.5e-16, 31.447% id in 318 aa; response regulator 1380955 6986953 VSAL_I1271 Aliivibrio salmonicida LFI1238 response regulator YP_002262736.1 1379624 D 316275 CDS YP_002262737.1 209694809 6986954 complement(1381019..1381696) 1 NC_011312.1 vancomycin resistance protein SanA 1381696 sanA 6986954 sanA Aliivibrio salmonicida LFI1238 vancomycin resistance protein SanA YP_002262737.1 1381019 R 316275 CDS YP_002262738.1 209694810 6989220 complement(1381724..1382056) 1 NC_011312.1 membrane protein 1382056 6989220 VSAL_I1273 Aliivibrio salmonicida LFI1238 membrane protein YP_002262738.1 1381724 R 316275 CDS YP_002262739.1 209694811 6986955 complement(1382175..1383863) 1 NC_011312.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1383863 sfcA 6986955 sfcA Aliivibrio salmonicida LFI1238 malate dehydrogenase YP_002262739.1 1382175 R 316275 CDS YP_002262740.1 209694812 6986956 1385664..1386545 1 NC_011312.1 transposase 1386545 6986956 VSAL_I1276 Aliivibrio salmonicida LFI1238 transposase YP_002262740.1 1385664 D 316275 CDS YP_002262741.1 209694813 6986958 1387430..1387744 1 NC_011312.1 transposase 1387744 6986958 VSAL_I1278 Aliivibrio salmonicida LFI1238 transposase YP_002262741.1 1387430 D 316275 CDS YP_002262742.1 209694814 6986959 1387741..1388088 1 NC_011312.1 transposase 1388088 6986959 VSAL_I1279 Aliivibrio salmonicida LFI1238 transposase YP_002262742.1 1387741 D 316275 CDS YP_002262743.1 209694815 6986960 1388160..1389647 1 NC_011312.1 transposase 1389647 6986960 VSAL_I1280 Aliivibrio salmonicida LFI1238 transposase YP_002262743.1 1388160 D 316275 CDS YP_002262744.1 209694816 6986961 complement(1390096..1391400) 1 NC_011312.1 sodium/dicarboxylate symporter 1391400 6986961 VSAL_I1281 Aliivibrio salmonicida LFI1238 sodium/dicarboxylate symporter YP_002262744.1 1390096 R 316275 CDS YP_002262745.1 209694817 6986962 1392050..1393654 1 NC_011312.1 Similar to bacillus subtilis Glycine betaine transporter OpuD UniProt:P54417 (512 aa) fasta scores: E()=4.2e-61, 38.763% id in 485 aa; transporter BCCT family 1393654 6986962 VSAL_I1282 Aliivibrio salmonicida LFI1238 transporter BCCT family YP_002262745.1 1392050 D 316275 CDS YP_002262746.1 209694818 6986963 1393885..1394196 1 NC_011312.1 hypothetical protein 1394196 6986963 VSAL_I1283 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262746.1 1393885 D 316275 CDS YP_002262747.1 209694819 6986964 1394217..1394594 1 NC_011312.1 hypothetical protein 1394594 6986964 VSAL_I1284 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262747.1 1394217 D 316275 CDS YP_002262748.1 209694820 6986965 1395025..1396188 1 NC_011312.1 hypothetical protein 1396188 6986965 VSAL_I1285 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262748.1 1395025 D 316275 CDS YP_002262749.1 209694821 6986966 complement(1396332..1397294) 1 NC_011312.1 hypothetical protein 1397294 6986966 VSAL_I1286 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262749.1 1396332 R 316275 CDS YP_002262750.1 209694822 6986967 complement(1397327..1397785) 1 NC_011312.1 RNA methyltransferase 1397785 6986967 VSAL_I1287 Aliivibrio salmonicida LFI1238 RNA methyltransferase YP_002262750.1 1397327 R 316275 CDS YP_002262751.1 209694823 6986968 1397881..1398354 1 NC_011312.1 hypothetical protein 1398354 6986968 VSAL_I1288 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262751.1 1397881 D 316275 CDS YP_002262752.1 209694824 6986969 1398517..1399893 1 NC_011312.1 alkaline-resistant alpha-amylase precursor 1399893 6986969 VSAL_I1289 Aliivibrio salmonicida LFI1238 alkaline-resistant alpha-amylase precursor YP_002262752.1 1398517 D 316275 CDS YP_002262753.1 209694825 6986970 1400496..1400810 1 NC_011312.1 transposase 1400810 6986970 VSAL_I1291 Aliivibrio salmonicida LFI1238 transposase YP_002262753.1 1400496 D 316275 CDS YP_002262754.1 209694826 6986971 1400807..1401154 1 NC_011312.1 transposase 1401154 6986971 VSAL_I1292 Aliivibrio salmonicida LFI1238 transposase YP_002262754.1 1400807 D 316275 CDS YP_002262755.1 209694827 6986972 1401226..1402713 1 NC_011312.1 transposase 1402713 6986972 VSAL_I1293 Aliivibrio salmonicida LFI1238 transposase YP_002262755.1 1401226 D 316275 CDS YP_002262756.1 209694828 6986973 complement(1403518..1405509) 1 NC_011312.1 methyl-accepting chemotaxis protein 1405509 6986973 VSAL_I1294 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002262756.1 1403518 R 316275 CDS YP_002262757.1 209694829 6986974 1405807..1406157 1 NC_011312.1 HIT family protein 1406157 6986974 VSAL_I1295 Aliivibrio salmonicida LFI1238 HIT family protein YP_002262757.1 1405807 D 316275 CDS YP_002262758.1 209694830 6986975 1406225..1407622 1 NC_011312.1 lipoprotein 1407622 6986975 VSAL_I1296 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262758.1 1406225 D 316275 CDS YP_002262759.1 209694831 6986976 1407622..1408011 1 NC_011312.1 lipoprotein 1408011 6986976 VSAL_I1297 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262759.1 1407622 D 316275 CDS YP_002262760.1 209694832 6986977 1408058..1408648 1 NC_011312.1 lipoprotein 1408648 6986977 VSAL_I1298 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262760.1 1408058 D 316275 CDS YP_002262761.1 209694833 6986978 1408863..1412438 1 NC_011312.1 hypothetical protein 1412438 6986978 VSAL_I1299 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262761.1 1408863 D 316275 CDS YP_002262762.1 209694834 6986979 1412441..1413328 1 NC_011312.1 hypothetical protein 1413328 6986979 VSAL_I1300 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262762.1 1412441 D 316275 CDS YP_002262763.1 209694835 6986980 1413481..1413819 1 NC_011312.1 hypothetical protein 1413819 6986980 VSAL_I1301 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262763.1 1413481 D 316275 CDS YP_002262764.1 209694836 6986981 complement(1413903..1414646) 1 NC_011312.1 hypothetical protein 1414646 6986981 VSAL_I1302 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262764.1 1413903 R 316275 CDS YP_002262765.1 209694837 6986982 complement(1414909..1415691) 1 NC_011312.1 membrane protein 1415691 6986982 VSAL_I1303 Aliivibrio salmonicida LFI1238 membrane protein YP_002262765.1 1414909 R 316275 CDS YP_002262766.1 209694838 6986983 complement(1415702..1416598) 1 NC_011312.1 6-phosphogluconate dehydrogenase 1416598 6986983 VSAL_I1304 Aliivibrio salmonicida LFI1238 6-phosphogluconate dehydrogenase YP_002262766.1 1415702 R 316275 CDS YP_002262767.1 209694839 6986984 complement(1416608..1417630) 1 NC_011312.1 hypothetical protein 1417630 6986984 VSAL_I1305 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262767.1 1416608 R 316275 CDS YP_002262768.1 209694840 6986985 1417791..1419131 1 NC_011312.1 GntR family transcriptional regulator 1419131 6986985 VSAL_I1306 Aliivibrio salmonicida LFI1238 GntR family transcriptional regulator YP_002262768.1 1417791 D 316275 CDS YP_002262769.1 209694841 6986986 1419148..1419978 1 NC_011312.1 antibiotic resistance protein 1419978 6986986 VSAL_I1307 Aliivibrio salmonicida LFI1238 antibiotic resistance protein YP_002262769.1 1419148 D 316275 CDS YP_002262770.1 209694842 6986987 complement(1419991..1420344) 1 NC_011312.1 transposase 1420344 6986987 VSAL_I1308 Aliivibrio salmonicida LFI1238 transposase YP_002262770.1 1419991 R 316275 CDS YP_002262771.1 209694843 6986988 complement(1420574..1420996) 1 NC_011312.1 transposase 1420996 6986988 VSAL_I1309 Aliivibrio salmonicida LFI1238 transposase YP_002262771.1 1420574 R 316275 CDS YP_002262772.1 209694844 6986989 1421218..1421769 1 NC_011312.1 hypothetical protein 1421769 6986989 VSAL_I1310 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262772.1 1421218 D 316275 CDS YP_002262773.1 209694845 6986990 1422124..1423413 1 NC_011312.1 NADH dehydrogenase 1423413 ndh 6986990 ndh Aliivibrio salmonicida LFI1238 NADH dehydrogenase YP_002262773.1 1422124 D 316275 CDS YP_002262774.1 209694846 6988886 1423587..1424891 1 NC_011312.1 helicase (DEAD/DEAH box helicase) 1424891 6988886 VSAL_I1312 Aliivibrio salmonicida LFI1238 helicase (DEAD/DEAH box helicase) YP_002262774.1 1423587 D 316275 CDS YP_002262775.1 209694847 6986991 1424901..1425347 1 NC_011312.1 hypothetical protein 1425347 6986991 VSAL_I1313 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262775.1 1424901 D 316275 CDS YP_002262776.1 209694848 6986992 1425529..1425843 1 NC_011312.1 transposase 1425843 6986992 VSAL_I1314 Aliivibrio salmonicida LFI1238 transposase YP_002262776.1 1425529 D 316275 CDS YP_002262777.1 209694849 6986996 complement(1429491..1430207) 1 NC_011312.1 unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT 1430207 6986996 VSAL_I1318 Aliivibrio salmonicida LFI1238 two-component response-regulatory protein YehT YP_002262777.1 1429491 R 316275 CDS YP_002262778.1 209694850 6986997 complement(1430200..1431882) 1 NC_011312.1 Probably regulates genes involved in cell wall metabolism and genes involved in virulence; membrane receptor, histidine kinase 1431882 6986997 VSAL_I1319 Aliivibrio salmonicida LFI1238 membrane receptor, histidine kinase YP_002262778.1 1430200 R 316275 CDS YP_002262779.1 209694851 6986998 1432162..1432713 1 NC_011312.1 membrane protein 1432713 6986998 VSAL_I1320 Aliivibrio salmonicida LFI1238 membrane protein YP_002262779.1 1432162 D 316275 CDS YP_002262780.1 209694852 6986999 complement(1432803..1432964) 1 NC_011312.1 hypothetical protein 1432964 6986999 VSAL_I1321 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262780.1 1432803 R 316275 CDS YP_002262781.1 209694853 6987000 1433272..1434147 1 NC_011312.1 metalloprotease; heat shock protein HtpX 1434147 6987000 VSAL_I1322 Aliivibrio salmonicida LFI1238 heat shock protein HtpX YP_002262781.1 1433272 D 316275 CDS YP_002262782.1 209694854 6987001 1434291..1434785 1 NC_011312.1 hypothetical protein 1434785 6987001 VSAL_I1323 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262782.1 1434291 D 316275 CDS YP_002262783.1 209694855 6987002 complement(1434877..1435389) 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 1435389 6987002 VSAL_I1324 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262783.1 1434877 R 316275 CDS YP_002262784.1 209694856 6987003 complement(1435503..1436786) 1 NC_011312.1 Expression may be regulated by Fur; proton glutamate symport protein 1436786 6987003 VSAL_I1325 Aliivibrio salmonicida LFI1238 proton glutamate symport protein YP_002262784.1 1435503 R 316275 CDS YP_002262785.1 209694857 6987004 1437217..1438626 1 NC_011312.1 Similar to Pseudomonas sp. Atrazine chlorohydrolase AtzA UniProt:P72156 (474 aa) blastp scores: E()=7e-45; amidohydrolase 1438626 6987004 VSAL_I1326 Aliivibrio salmonicida LFI1238 amidohydrolase YP_002262785.1 1437217 D 316275 CDS YP_002262786.1 209694858 6987005 1438827..1440365 1 NC_011312.1 hypothetical protein 1440365 6987005 VSAL_I1327 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262786.1 1438827 D 316275 CDS YP_002262787.1 209694859 6987006 1440531..1441082 1 NC_011312.1 membrane associated peptidase 1441082 6987006 VSAL_I1328 Aliivibrio salmonicida LFI1238 membrane associated peptidase YP_002262787.1 1440531 D 316275 CDS YP_002262788.1 209694860 6987007 complement(1441205..1442605) 1 NC_011312.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1442605 asnC 6987007 asnC Aliivibrio salmonicida LFI1238 asparaginyl-tRNA synthetase YP_002262788.1 1441205 R 316275 CDS YP_002262789.1 209694861 6988271 1442862..1443224 1 NC_011312.1 6-pyruvoyl tetrahydrobiopterin synthase 1443224 6988271 VSAL_I1330 Aliivibrio salmonicida LFI1238 6-pyruvoyl tetrahydrobiopterin synthase YP_002262789.1 1442862 D 316275 CDS YP_002262790.1 209694862 6987008 complement(1443279..1444295) 1 NC_011312.1 hypothetical protein 1444295 6987008 VSAL_I1331 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262790.1 1443279 R 316275 CDS YP_002262791.1 209694863 6987009 1444489..1445733 1 NC_011312.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 1445733 sbcD 6987009 sbcD Aliivibrio salmonicida LFI1238 exonuclease subunit SbcD YP_002262791.1 1444489 D 316275 CDS YP_002262792.1 209694864 6989223 1445730..1449410 1 NC_011312.1 nuclease sbcCD subunit C 1449410 sbcC 6989223 sbcC Aliivibrio salmonicida LFI1238 nuclease sbcCD subunit C YP_002262792.1 1445730 D 316275 CDS YP_002262793.1 209694865 6989222 1449467..1449952 1 NC_011312.1 thioesterase 1449952 6989222 VSAL_I1334 Aliivibrio salmonicida LFI1238 thioesterase YP_002262793.1 1449467 D 316275 CDS YP_002262794.1 209694866 6987010 complement(1450389..1451582) 1 NC_011312.1 transposase 1451582 6987010 VSAL_I1335 Aliivibrio salmonicida LFI1238 transposase YP_002262794.1 1450389 R 316275 CDS YP_002262795.1 209694867 6989404 1452557..1453711 1 NC_011312.1 tyrosine-specific transporter 1453711 6989404 VSAL_I1337 Aliivibrio salmonicida LFI1238 tyrosine-specific transporter YP_002262795.1 1452557 D 316275 CDS YP_002262796.1 209694868 6987013 1455044..1455925 1 NC_011312.1 transposase 1455925 6987013 VSAL_I1339 Aliivibrio salmonicida LFI1238 transposase YP_002262796.1 1455044 D 316275 CDS YP_002262797.1 209694869 6987014 1456036..1456395 1 NC_011312.1 lipoprotein 1456395 6987014 VSAL_I1340 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262797.1 1456036 D 316275 CDS YP_002262798.1 209694870 6987015 1456444..1456803 1 NC_011312.1 lipoprotein 1456803 6987015 VSAL_I1341 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262798.1 1456444 D 316275 CDS YP_002262799.1 209694871 6987016 complement(1456867..1457409) 1 NC_011312.1 hypothetical protein 1457409 6987016 VSAL_I1342 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262799.1 1456867 R 316275 CDS YP_002262800.1 209694872 6987017 complement(1457621..1458982) 1 NC_011312.1 Expression may be regulated by Fur; L-serine dehydratase 1 1458982 sdaA 6987017 sdaA Aliivibrio salmonicida LFI1238 L-serine dehydratase 1 YP_002262800.1 1457621 R 316275 CDS YP_002262801.1 209694873 6989224 complement(1459080..1460330) 1 NC_011312.1 serine transporter 1460330 sdaC 6989224 sdaC Aliivibrio salmonicida LFI1238 serine transporter YP_002262801.1 1459080 R 316275 CDS YP_002262802.1 209694874 6989225 complement(1460522..1461130) 1 NC_011312.1 NUDIX hydrolase 1461130 6989225 VSAL_I1345 Aliivibrio salmonicida LFI1238 NUDIX hydrolase YP_002262802.1 1460522 R 316275 CDS YP_002262803.1 209694875 6987018 complement(1461130..1462500) 1 NC_011312.1 para-aminobenzoate synthase component I 1462500 pabB 6987018 pabB Aliivibrio salmonicida LFI1238 para-aminobenzoate synthase component I YP_002262803.1 1461130 R 316275 CDS YP_002262804.1 209694876 6988941 1462671..1464215 1 NC_011312.1 fumarate hydratase class I 1464215 6988941 VSAL_I1347 Aliivibrio salmonicida LFI1238 fumarate hydratase class I YP_002262804.1 1462671 D 316275 CDS YP_002262805.1 209694877 6987019 complement(1464260..1465141) 1 NC_011312.1 transposase 1465141 6987019 VSAL_I1348 Aliivibrio salmonicida LFI1238 transposase YP_002262805.1 1464260 R 316275 CDS YP_002262806.1 209694878 6987020 complement(1465291..1466616) 1 NC_011312.1 transposase 1466616 6987020 VSAL_I1349 Aliivibrio salmonicida LFI1238 transposase YP_002262806.1 1465291 R 316275 CDS YP_002262807.1 209694879 6987021 1466801..1467163 1 NC_011312.1 lipoprotein 1467163 6987021 VSAL_I1350 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262807.1 1466801 D 316275 CDS YP_002262808.1 209694880 6987022 1467216..1468289 1 NC_011312.1 Similar to Pseudomonas aeruginosa Multidrug resistance protein MexA precursor UniProt:P52477 (383 aa) blastp scores: E()=9e-17; multidrug resistance protein precursor 1468289 6987022 VSAL_I1351 Aliivibrio salmonicida LFI1238 multidrug resistance protein precursor YP_002262808.1 1467216 D 316275 CDS YP_002262809.1 209694881 6987023 1468292..1469371 1 NC_011312.1 Similar to Pseudomonas putida Solvent efflux pump periplasmic linker SrpA precursor UniProt:O31099 (382 aa) fasta scores: E()=9.6e-13, 26.829% id in 369 aa; organic solvent efflux pump precursor (periplasmic linker protein component) 1469371 6987023 VSAL_I1352 Aliivibrio salmonicida LFI1238 organic solvent efflux pump precursor (periplasmic linker protein component) YP_002262809.1 1468292 D 316275 CDS YP_002262810.1 209694882 6987024 1469371..1472448 1 NC_011312.1 Similar to Ralstonia metallidurans Cobalt-zinc-cadmium resistance protein CzcA UniProt:P13511 (1063 aa) blastp scores: E()=2e-66; multi-drug efflux protein 1472448 6987024 VSAL_I1353 Aliivibrio salmonicida LFI1238 multi-drug efflux protein YP_002262810.1 1469371 D 316275 CDS YP_002262811.1 209694883 6987025 1472721..1473107 1 NC_011312.1 hypothetical protein 1473107 6987025 VSAL_I1354 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262811.1 1472721 D 316275 CDS YP_002262812.1 209694884 6987026 complement(1473236..1474426) 1 NC_011312.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 1474426 metC 6987026 metC Aliivibrio salmonicida LFI1238 cystathionine beta-lyase YP_002262812.1 1473236 R 316275 CDS YP_002262813.1 209694885 6988789 1474582..1474932 1 NC_011312.1 hypothetical protein 1474932 6988789 VSAL_I1356 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262813.1 1474582 D 316275 CDS YP_002262814.1 209694886 6987027 1475219..1475737 1 NC_011312.1 secreted protein Hcp-2 (haemolysin co-regulated protein) 1475737 hpc 6987027 hpc Aliivibrio salmonicida LFI1238 secreted protein Hcp-2 (haemolysin co-regulated protein) YP_002262814.1 1475219 D 316275 CDS YP_002262815.1 209694887 6988677 1475814..1478078 1 NC_011312.1 VgrG preotein, VgrG-2 1478078 6988677 VSAL_I1358 Aliivibrio salmonicida LFI1238 VgrG preotein, VgrG-2 YP_002262815.1 1475814 D 316275 CDS YP_002262816.1 209694888 6987028 1478060..1478653 1 NC_011312.1 hypothetical protein 1478653 6987028 VSAL_I1359 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262816.1 1478060 D 316275 CDS YP_002262817.1 209694889 6987031 complement(1482240..1482587) 1 NC_011312.1 transposase 1482587 6987031 VSAL_I1362 Aliivibrio salmonicida LFI1238 transposase YP_002262817.1 1482240 R 316275 CDS YP_002262818.1 209694890 6987032 complement(1482584..1482898) 1 NC_011312.1 transposase 1482898 6987032 VSAL_I1363 Aliivibrio salmonicida LFI1238 transposase YP_002262818.1 1482584 R 316275 CDS YP_002262819.1 209694891 6987033 complement(1482981..1485653) 1 NC_011312.1 CDS may be truncated by the insertion of the downstream IS element and subsequent recombination events; Similar to Aeromonas hydrophila Nuclease NucH UniProt:Q44070 (1070 aa) fasta scores: E()=1.7e-38,38.610% id in 878 aa. CDS is slightly extended at the N-terminus in comparison to orthologues. Probably due to the insertion of the downstream IS element; nuclease 1485653 6987033 VSAL_I1364 Aliivibrio salmonicida LFI1238 nuclease YP_002262819.1 1482981 R 316275 CDS YP_002262820.1 209694892 6987034 complement(1485914..1486795) 1 NC_011312.1 transposase 1486795 6987034 VSAL_I1365 Aliivibrio salmonicida LFI1238 transposase YP_002262820.1 1485914 R 316275 CDS YP_002262821.1 209694893 6987035 1487015..1487869 1 NC_011312.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1487869 6987035 VSAL_I1366 Aliivibrio salmonicida LFI1238 DNA ligase YP_002262821.1 1487015 D 316275 CDS YP_002262822.1 209694894 6987036 complement(1487925..1488926) 1 NC_011312.1 ribose operon repressor 1488926 rbsR 6987036 rbsR Aliivibrio salmonicida LFI1238 ribose operon repressor YP_002262822.1 1487925 R 316275 CDS YP_002262823.1 209694895 6989072 complement(1489002..1489919) 1 NC_011312.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 1489919 rbsK 6989072 rbsK Aliivibrio salmonicida LFI1238 ribokinase YP_002262823.1 1489002 R 316275 CDS YP_002262824.1 209694896 6989071 complement(1490100..1490978) 1 NC_011312.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 1490978 rbsB 6989071 rbsB Aliivibrio salmonicida LFI1238 D-ribose transporter subunit RbsB YP_002262824.1 1490100 R 316275 CDS YP_002262825.1 209694897 6989068 complement(1491115..1492086) 1 NC_011312.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 1492086 rbsC 6989068 rbsC Aliivibrio salmonicida LFI1238 ribose ABC transporter permease YP_002262825.1 1491115 R 316275 CDS YP_002262826.1 209694898 6989069 complement(1492098..1493612) 1 NC_011312.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding protein; D-ribose transporter ATP-binding protein 1493612 rbsA 6989069 rbsA Aliivibrio salmonicida LFI1238 D-ribose transporter ATP-binding protein YP_002262826.1 1492098 R 316275 CDS YP_002262827.1 209694899 6989067 complement(1493673..1494092) 1 NC_011312.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 1494092 rbsD 6989067 rbsD Aliivibrio salmonicida LFI1238 D-ribose pyranase YP_002262827.1 1493673 R 316275 CDS YP_002262828.1 209694900 6989070 1494476..1494637 1 NC_011312.1 hypothetical protein 1494637 6989070 VSAL_I1373 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262828.1 1494476 D 316275 CDS YP_002262829.1 209694901 6987037 1494709..1495161 1 NC_011312.1 hypothetical protein 1495161 6987037 VSAL_I1374 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262829.1 1494709 D 316275 CDS YP_002262830.1 209694902 6987038 1495390..1495632 1 NC_011312.1 Expression may be regulated by Fur; membrane protein 1495632 6987038 VSAL_I1375 Aliivibrio salmonicida LFI1238 membrane protein YP_002262830.1 1495390 D 316275 CDS YP_002262831.1 209694903 6987039 1495877..1496020 1 NC_011312.1 Similar to C-terminal part of Vibrio fischeri Ferrichrome-binding protein. UniProt:Q5E573 (178 aa) blastp scores: E()=8e-04; hypothetical protein 1496020 6987039 VSAL_I1376 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262831.1 1495877 D 316275 CDS YP_002262832.1 209694904 6987040 1496286..1496651 1 NC_011312.1 lipoprotein 1496651 6987040 VSAL_I1377 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262832.1 1496286 D 316275 CDS YP_002262833.1 209694905 6987041 complement(1496780..1497346) 1 NC_011312.1 transposase 1497346 6987041 VSAL_I1378 Aliivibrio salmonicida LFI1238 transposase YP_002262833.1 1496780 R 316275 CDS YP_002262834.1 209694906 6987042 complement(1497364..1497786) 1 NC_011312.1 transposase 1497786 6987042 VSAL_I1379 Aliivibrio salmonicida LFI1238 transposase YP_002262834.1 1497364 R 316275 CDS YP_002262835.1 209694907 6987044 1498417..1499034 1 NC_011312.1 lipoprotein 1499034 6987044 VSAL_I1381 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262835.1 1498417 D 316275 CDS YP_002262836.1 209694908 6987045 complement(1499112..1500494) 1 NC_011312.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1500494 norM 6987045 norM Aliivibrio salmonicida LFI1238 multidrug efflux protein YP_002262836.1 1499112 R 316275 CDS YP_002262837.1 209694909 6988901 1500753..1501364 1 NC_011312.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1501364 ribE 6988901 ribE Aliivibrio salmonicida LFI1238 riboflavin synthase subunit alpha YP_002262837.1 1500753 D 316275 CDS YP_002262838.1 209694910 6989099 complement(1501380..1501583) 1 NC_011312.1 hypothetical protein 1501583 6989099 VSAL_I1384 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262838.1 1501380 R 316275 CDS YP_002262839.1 209694911 6987046 complement(1501813..1502679) 1 NC_011312.1 hypothetical protein 1502679 6987046 VSAL_I1385 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262839.1 1501813 R 316275 CDS YP_002262840.1 209694912 6987047 1502924..1503259 1 NC_011312.1 hypothetical protein 1503259 6987047 VSAL_I1386 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262840.1 1502924 D 316275 CDS YP_002262841.1 209694913 6987048 complement(1503335..1503823) 1 NC_011312.1 Similar to Escherichia coli Lipoprotein Spr UniProt:P0AFV4 (188 aa) fasta scores: E()=4.6e-19, 50.000% id in 112 aa; lipoprotein 1503823 6987048 VSAL_I1387 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262841.1 1503335 R 316275 CDS YP_002262842.1 209694914 6987049 1504126..1505718 1 NC_011312.1 ion transporter 1505718 6987049 VSAL_I1388 Aliivibrio salmonicida LFI1238 ion transporter YP_002262842.1 1504126 D 316275 CDS YP_002262843.1 209694915 6987050 1505861..1506550 1 NC_011312.1 ribosomal small subunit pseudouridine synthase A 1506550 rsuA 6987050 rsuA Aliivibrio salmonicida LFI1238 ribosomal small subunit pseudouridine synthase A YP_002262843.1 1505861 D 316275 CDS YP_002262844.1 209694916 6989213 complement(1506586..1507389) 1 NC_011312.1 membrane protein 1507389 6989213 VSAL_I1390 Aliivibrio salmonicida LFI1238 membrane protein YP_002262844.1 1506586 R 316275 CDS YP_002262845.1 209694917 6987051 1507476..1508219 1 NC_011312.1 hypothetical protein 1508219 6987051 VSAL_I1391 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262845.1 1507476 D 316275 CDS YP_002262846.1 209694918 6987052 1508346..1509254 1 NC_011312.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1509254 6987052 VSAL_I1392 Aliivibrio salmonicida LFI1238 N-acetyl-D-glucosamine kinase YP_002262846.1 1508346 D 316275 CDS YP_002262847.1 209694919 6987053 complement(1509379..1509711) 1 NC_011312.1 hypothetical protein 1509711 6987053 VSAL_I1393 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262847.1 1509379 R 316275 CDS YP_002262848.1 209694920 6987054 1510487..1512079 1 NC_011312.1 hypothetical protein 1512079 6987054 VSAL_I1394 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262848.1 1510487 D 316275 CDS YP_002262849.1 209694921 6987055 1512083..1512886 1 NC_011312.1 membrane protein 1512886 6987055 VSAL_I1395 Aliivibrio salmonicida LFI1238 membrane protein YP_002262849.1 1512083 D 316275 CDS YP_002262850.1 209694922 6987056 1513088..1513318 1 NC_011312.1 DNA-damage-inducible protein I (DinI) 1513318 6987056 VSAL_I1396 Aliivibrio salmonicida LFI1238 DNA-damage-inducible protein I (DinI) YP_002262850.1 1513088 D 316275 CDS YP_002262851.1 209694923 6987057 complement(1513835..1515616) 1 NC_011312.1 CDS is extended with approximately 180 aa residues at the N-terminus in comparison to the Escherichia coli orthologue; bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 1515616 moeA 6987057 moeA Aliivibrio salmonicida LFI1238 bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA YP_002262851.1 1513835 R 316275 CDS YP_002262852.1 209694924 6988818 complement(1515613..1516197) 1 NC_011312.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 1516197 mobA 6988818 mobA Aliivibrio salmonicida LFI1238 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_002262852.1 1515613 R 316275 CDS YP_002262853.1 209694925 6988817 complement(1516209..1516883) 1 NC_011312.1 Similar to Escherichia coli Glutamine transport ATP-binding protein GlnQ UniProt:P10346 (240 aa) blastp scores: E()=1e-18; ABC transporter ATP-binding protein 1516883 6988817 VSAL_I1399 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002262853.1 1516209 R 316275 CDS YP_002262855.1 209694926 6987058 complement(1517596..1518417) 1 NC_011312.1 Similar to Eubacterium acidaminophilum Extracellular tungstate binding protein precursor TupA UniProt:Q93KD6 (286 aa) fasta scores: E()=1e-41, 49.796% id in 245 aa; extracellular tungstate binding protein precursor 1518417 tupA 6987058 tupA Aliivibrio salmonicida LFI1238 extracellular tungstate binding protein precursor YP_002262855.1 1517596 R 316275 CDS YP_002262856.1 209694927 6987059 1520143..1522170 1 NC_011312.1 Similar to Escherichia coli Signal transduction histidine-protein kinase AtoS UniProt:Q06067 (608 aa) fasta scores: E()=1e-20, 34.333% id in 300 aa; signal transduction protein, histidine kinase 1522170 6987059 VSAL_I1403 Aliivibrio salmonicida LFI1238 signal transduction protein, histidine kinase YP_002262856.1 1520143 D 316275 CDS YP_002262857.1 209694928 6987060 1522197..1522598 1 NC_011312.1 hypothetical protein 1522598 6987060 VSAL_I1404 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262857.1 1522197 D 316275 CDS YP_002262858.1 209694929 6987061 complement(1522687..1522869) 1 NC_011312.1 hypothetical protein 1522869 6987061 VSAL_I1405 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262858.1 1522687 R 316275 CDS YP_002262859.1 209694930 6987062 1523086..1523517 1 NC_011312.1 membrane protein 1523517 6987062 VSAL_I1406 Aliivibrio salmonicida LFI1238 membrane protein YP_002262859.1 1523086 D 316275 CDS YP_002262860.1 209694931 6987063 1523869..1524600 1 NC_011312.1 glycosyl transferase family protein 1524600 6987063 VSAL_I1407 Aliivibrio salmonicida LFI1238 glycosyl transferase family protein YP_002262860.1 1523869 D 316275 CDS YP_002262861.1 209694932 6987064 1524623..1525201 1 NC_011312.1 membrane protein 1525201 6987064 VSAL_I1408 Aliivibrio salmonicida LFI1238 membrane protein YP_002262861.1 1524623 D 316275 CDS YP_002262862.1 209694933 6987066 complement(1526495..1527376) 1 NC_011312.1 transposase 1527376 6987066 VSAL_I1410 Aliivibrio salmonicida LFI1238 transposase YP_002262862.1 1526495 R 316275 CDS YP_002262863.1 209694934 6987067 1528352..1528810 1 NC_011312.1 hypothetical protein 1528810 6987067 VSAL_I1411 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262863.1 1528352 D 316275 CDS YP_002262864.1 209694935 6987068 1528916..1529311 1 NC_011312.1 hypothetical protein 1529311 6987068 VSAL_I1412 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262864.1 1528916 D 316275 CDS YP_002262865.1 209694936 6987069 1529362..1529850 1 NC_011312.1 hypothetical protein 1529850 6987069 VSAL_I1413 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262865.1 1529362 D 316275 CDS YP_002262866.1 209694937 6987070 1530171..1530485 1 NC_011312.1 transposase 1530485 6987070 VSAL_I1415 Aliivibrio salmonicida LFI1238 transposase YP_002262866.1 1530171 D 316275 CDS YP_002262867.1 209694938 6987071 1530482..1530829 1 NC_011312.1 transposase 1530829 6987071 VSAL_I1416 Aliivibrio salmonicida LFI1238 transposase YP_002262867.1 1530482 D 316275 CDS YP_002262868.1 209694939 6987072 1530901..1532388 1 NC_011312.1 transposase 1532388 6987072 VSAL_I1417 Aliivibrio salmonicida LFI1238 transposase YP_002262868.1 1530901 D 316275 CDS YP_002262869.1 209694940 6987073 1534103..1534549 1 NC_011312.1 acetyltransferase 1534549 6987073 VSAL_I1418 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002262869.1 1534103 D 316275 CDS YP_002262870.1 209694941 6987074 1534590..1535009 1 NC_011312.1 acetyltransferase 1535009 6987074 VSAL_I1419 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002262870.1 1534590 D 316275 CDS YP_002262871.1 209694942 6987075 1535018..1535806 1 NC_011312.1 hypothetical protein 1535806 6987075 VSAL_I1420 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262871.1 1535018 D 316275 CDS YP_002262872.1 209694943 6987076 1535830..1536660 1 NC_011312.1 Similar to Escherichia coli 3-mercaptopyruvate sulfurtransferase SseA UniProt:P31142 (280 aa) fasta scores: E()=5.9e-30, 35.507% id in 276 aa; sulfurtransferase (rhodanese-like protein) 1536660 6987076 VSAL_I1421 Aliivibrio salmonicida LFI1238 sulfurtransferase (rhodanese-like protein) YP_002262872.1 1535830 D 316275 CDS YP_002262873.1 209694944 6987077 1536688..1536906 1 NC_011312.1 hypothetical protein 1536906 6987077 VSAL_I1422 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262873.1 1536688 D 316275 CDS YP_002262874.1 209694945 6987079 1537500..1537976 1 NC_011312.1 acetyltransferase 1537976 6987079 VSAL_I1424 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002262874.1 1537500 D 316275 CDS YP_002262875.1 209694946 6987080 complement(1538051..1538617) 1 NC_011312.1 transposase 1538617 6987080 VSAL_I1425 Aliivibrio salmonicida LFI1238 transposase YP_002262875.1 1538051 R 316275 CDS YP_002262876.1 209694947 6987081 complement(1538635..1539057) 1 NC_011312.1 transposase 1539057 6987081 VSAL_I1426 Aliivibrio salmonicida LFI1238 transposase YP_002262876.1 1538635 R 316275 CDS YP_002262877.1 209694948 6987082 complement(1539188..1539427) 1 NC_011312.1 No significant database matches. Expression may be regulated by Fur; hypothetical protein 1539427 6987082 VSAL_I1427 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262877.1 1539188 R 316275 CDS YP_002262878.1 209694949 6987083 complement(1540076..1540750) 1 NC_011312.1 hypothetical protein 1540750 6987083 VSAL_I1428 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262878.1 1540076 R 316275 CDS YP_002262879.1 209694950 6987085 complement(1541787..1542980) 1 NC_011312.1 transposase 1542980 6987085 VSAL_I1430 Aliivibrio salmonicida LFI1238 transposase YP_002262879.1 1541787 R 316275 CDS YP_002262880.1 209694951 6987086 1544754..1545284 1 NC_011312.1 acetyltransferase 1545284 6987086 VSAL_I1431 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002262880.1 1544754 D 316275 CDS YP_002262881.1 209694952 6987087 1545349..1545699 1 NC_011312.1 hypothetical protein 1545699 6987087 VSAL_I1432 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262881.1 1545349 D 316275 CDS YP_002262882.1 209694953 6987088 1546052..1548943 1 NC_011312.1 hypothetical protein 1548943 6987088 VSAL_I1433 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262882.1 1546052 D 316275 CDS YP_002262883.1 209694954 6987090 1550006..1550791 1 NC_011312.1 hypothetical protein 1550791 6987090 VSAL_I1435 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262883.1 1550006 D 316275 CDS YP_002262884.1 209694955 6987091 1550854..1551594 1 NC_011312.1 LamB/YcsF family protein 1551594 6987091 VSAL_I1436 Aliivibrio salmonicida LFI1238 LamB/YcsF family protein YP_002262884.1 1550854 D 316275 CDS YP_002262885.1 209694956 6987092 1551597..1552316 1 NC_011312.1 Similar to Bacillus subtilis Kinase A inhibitor KipI UniProt:P60495 (240 aa) fasta scores: E()=2.1e-23,34.361% id in 227 aa; allophanate hydrolase subunit 1 1552316 6987092 VSAL_I1437 Aliivibrio salmonicida LFI1238 allophanate hydrolase subunit 1 YP_002262885.1 1551597 D 316275 CDS YP_002262886.1 209694957 6987093 1552313..1553269 1 NC_011312.1 allophanate hydrolase subunit 2 1553269 6987093 VSAL_I1438 Aliivibrio salmonicida LFI1238 allophanate hydrolase subunit 2 YP_002262886.1 1552313 D 316275 CDS YP_002262887.1 209694958 6987094 1553364..1553678 1 NC_011312.1 transposase 1553678 6987094 VSAL_I1439 Aliivibrio salmonicida LFI1238 transposase YP_002262887.1 1553364 D 316275 CDS YP_002262888.1 209694959 6987096 complement(1553950..1554831) 1 NC_011312.1 transposase 1554831 6987096 VSAL_I1441 Aliivibrio salmonicida LFI1238 transposase YP_002262888.1 1553950 R 316275 CDS YP_002262889.1 209694960 6987097 1555101..1556588 1 NC_011312.1 transposase 1556588 6987097 VSAL_I1442 Aliivibrio salmonicida LFI1238 transposase YP_002262889.1 1555101 D 316275 CDS YP_002262890.1 209694961 6987098 1556716..1557957 1 NC_011312.1 Similar to Escherichia coli Manganese transport protein MntH UniProt:P0A769 (412 aa) fasta scores: E()=1.8e-05, 21.792% id in 413 aa; transmembrane transport protein 1557957 6987098 VSAL_I1443 Aliivibrio salmonicida LFI1238 transmembrane transport protein YP_002262890.1 1556716 D 316275 CDS YP_002262891.1 209694962 6987100 complement(1558822..1560015) 1 NC_011312.1 transposase 1560015 6987100 VSAL_I1445 Aliivibrio salmonicida LFI1238 transposase YP_002262891.1 1558822 R 316275 CDS YP_002262892.1 209694963 6987101 1562147..1563268 1 NC_011312.1 membrane-bound lytic murein transglycosylase C 1563268 mltC 6987101 mltC Aliivibrio salmonicida LFI1238 membrane-bound lytic murein transglycosylase C YP_002262892.1 1562147 D 316275 CDS YP_002262893.1 209694964 6988811 1563304..1565457 1 NC_011312.1 Possible alternative translational start site after codon 11; metal dependent phosphohydrolases 1565457 6988811 VSAL_I1447 Aliivibrio salmonicida LFI1238 metal dependent phosphohydrolases YP_002262893.1 1563304 D 316275 CDS YP_002262894.1 209694965 6987102 complement(1565543..1566394) 1 NC_011312.1 formate dehydrogenase accessory protein 1566394 6987102 VSAL_I1448 Aliivibrio salmonicida LFI1238 formate dehydrogenase accessory protein YP_002262894.1 1565543 R 316275 CDS YP_002262895.1 209694966 6987103 1566536..1567543 1 NC_011312.1 hypothetical protein 1567543 6987103 VSAL_I1449 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262895.1 1566536 D 316275 CDS YP_002262896.1 209694967 6987104 1567750..1569426 1 NC_011312.1 Expression may be regulated by Fur; ferredoxin 1569426 6987104 VSAL_I1450 Aliivibrio salmonicida LFI1238 ferredoxin YP_002262896.1 1567750 D 316275 CDS YP_002262897.1 209694968 6987105 1569431..1570042 1 NC_011312.1 cytoplasmic chaperone TorD 1570042 6987105 VSAL_I1451 Aliivibrio salmonicida LFI1238 cytoplasmic chaperone TorD YP_002262897.1 1569431 D 316275 CDS YP_002262898.1 209694969 6987106 1570121..1570318 1 NC_011312.1 hypothetical protein 1570318 6987106 VSAL_I1452 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262898.1 1570121 D 316275 CDS YP_002262899.1 209694970 6987107 1570330..1573185 1 NC_011312.1 formate dehydrogenase 1573185 fdhA 6987107 fdhA Aliivibrio salmonicida LFI1238 formate dehydrogenase YP_002262899.1 1570330 D 316275 CDS YP_002262900.1 209694971 6988485 1573197..1573805 1 NC_011312.1 formate dehydrogenase iron-sulfur subunit 1573805 fdhB 6988485 fdhB Aliivibrio salmonicida LFI1238 formate dehydrogenase iron-sulfur subunit YP_002262900.1 1573197 D 316275 CDS YP_002262901.1 209694972 6988486 1573822..1574841 1 NC_011312.1 Similar to Escherichia coli Formate dehydrogenase,nitrate-inducible, cytochrome b556(fdn) subunit FdnI UniProt:P0AEK7 (217 aa) fasta scores: E()=1.7e-14, 28.899% id in 218 aa; formate dehydrogenase 1574841 fdnI 6988486 fdnI Aliivibrio salmonicida LFI1238 formate dehydrogenase YP_002262901.1 1573822 D 316275 CDS YP_002262902.1 209694973 6988487 1575087..1575620 1 NC_011312.1 ribosomal-protein-serine acetyltransferase 1575620 rimL 6988487 rimL Aliivibrio salmonicida LFI1238 ribosomal-protein-serine acetyltransferase YP_002262902.1 1575087 D 316275 CDS YP_002262903.1 209694974 6989105 1575814..1576692 1 NC_011312.1 hypothetical protein 1576692 6989105 VSAL_I1457 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262903.1 1575814 D 316275 CDS YP_002262904.1 209694975 6987109 1578104..1578985 1 NC_011312.1 transposase 1578985 6987109 VSAL_I1459 Aliivibrio salmonicida LFI1238 transposase YP_002262904.1 1578104 D 316275 CDS YP_002262905.1 209694976 6987110 1579165..1579944 1 NC_011312.1 AraC family transcriptional regulator 1579944 6987110 VSAL_I1460 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002262905.1 1579165 D 316275 CDS YP_002262906.1 209694977 6987112 complement(1581620..1582186) 1 NC_011312.1 transposase 1582186 6987112 VSAL_I1463 Aliivibrio salmonicida LFI1238 transposase YP_002262906.1 1581620 R 316275 CDS YP_002262907.1 209694978 6987113 complement(1582204..1582626) 1 NC_011312.1 transposase 1582626 6987113 VSAL_I1464 Aliivibrio salmonicida LFI1238 transposase YP_002262907.1 1582204 R 316275 CDS YP_002262908.1 209694979 6987114 1583625..1583840 1 NC_011312.1 hypothetical protein 1583840 6987114 VSAL_I1465 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262908.1 1583625 D 316275 CDS YP_002262909.1 209694980 6987115 complement(1583876..1584832) 1 NC_011312.1 transposase 1584832 6987115 VSAL_I1466 Aliivibrio salmonicida LFI1238 transposase YP_002262909.1 1583876 R 316275 CDS YP_002262910.1 209694981 6987116 1585157..1585579 1 NC_011312.1 Similar to Vibrio cholerae Hypothetical protein UniProt:Q9KMD9 (97 aa) fasta scores: E()=8.2e-11, 79.310% id in 58 aa. CDS is extended at the N-terminus in comparison to orthologues; hypothetical protein 1585579 6987116 VSAL_I1467 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262910.1 1585157 D 316275 CDS YP_002262911.1 209694982 6987118 complement(1585901..1586185) 1 NC_011312.1 plasmid stabilisation system protein 1586185 6987118 VSAL_I1469 Aliivibrio salmonicida LFI1238 plasmid stabilisation system protein YP_002262911.1 1585901 R 316275 CDS YP_002262912.1 209694983 6987119 complement(1586175..1586423) 1 NC_011312.1 hypothetical protein 1586423 6987119 VSAL_I1470 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262912.1 1586175 R 316275 CDS YP_002262913.1 209694984 6987120 1586716..1587504 1 NC_011312.1 Similar to Rhizobium leguminosarum bv. trifolii Trifolitoxin immunity protein TfxG UniProt:P42729 (261 aa) fasta scores: E()=1.9e-12, 35.961% id in 203 aa. Expression may be regulated by Fur; antibiotic resistance protein 1587504 6987120 VSAL_I1471 Aliivibrio salmonicida LFI1238 antibiotic resistance protein YP_002262913.1 1586716 D 316275 CDS YP_002262914.1 209694985 6987121 1587526..1587978 1 NC_011312.1 NUDIX hydrolase 1587978 6987121 VSAL_I1472 Aliivibrio salmonicida LFI1238 NUDIX hydrolase YP_002262914.1 1587526 D 316275 CDS YP_002262915.1 209694986 6987122 1588003..1588503 1 NC_011312.1 acetyltransferase 1588503 6987122 VSAL_I1473 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002262915.1 1588003 D 316275 CDS YP_002262916.1 209694987 6987124 1588718..1589356 1 NC_011312.1 CDS contanins a rare Leucine start codon (TTA). No significant database matches; outer membrane protein 1589356 6987124 VSAL_I1475 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002262916.1 1588718 D 316275 CDS YP_002262917.1 209694988 6987125 1589483..1589914 1 NC_011312.1 membrane protein 1589914 6987125 VSAL_I1476 Aliivibrio salmonicida LFI1238 membrane protein YP_002262917.1 1589483 D 316275 CDS YP_002262918.1 209694989 6987126 1590020..1590442 1 NC_011312.1 transposase 1590442 6987126 VSAL_I1477 Aliivibrio salmonicida LFI1238 transposase YP_002262918.1 1590020 D 316275 CDS YP_002262919.1 209694990 6987127 1590460..1591026 1 NC_011312.1 transposase 1591026 6987127 VSAL_I1478 Aliivibrio salmonicida LFI1238 transposase YP_002262919.1 1590460 D 316275 CDS YP_002262920.1 209694991 6987130 1592512..1592919 1 NC_011312.1 lipoprotein 1592919 6987130 VSAL_I1481 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262920.1 1592512 D 316275 CDS YP_002262921.1 209694992 6987131 1592965..1593717 1 NC_011312.1 glucose 1-dehydrogenase 1593717 6987131 VSAL_I1482 Aliivibrio salmonicida LFI1238 glucose 1-dehydrogenase YP_002262921.1 1592965 D 316275 CDS YP_002262922.1 209694993 6987132 1593892..1594086 1 NC_011312.1 hypothetical protein 1594086 6987132 VSAL_I1483 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262922.1 1593892 D 316275 CDS YP_002262923.1 209694994 6987133 complement(1594166..1594882) 1 NC_011312.1 Similar to Chlamydia trachomatis 3-oxoacyl-[acyl-carrier-protein] reductase FabG UniProt:P38004 (247 aa) fasta scores: E()=1.4e-15, 34.146% id in 205 aa; short chain dehydrogenase 1594882 6987133 VSAL_I1484 Aliivibrio salmonicida LFI1238 short chain dehydrogenase YP_002262923.1 1594166 R 316275 CDS YP_002262924.1 209694995 6987134 1595114..1595812 1 NC_011312.1 hypothetical protein 1595812 6987134 VSAL_I1485 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262924.1 1595114 D 316275 CDS YP_002262925.1 209694996 6987135 1596113..1596643 1 NC_011312.1 cold-shock protein 1596643 6987135 VSAL_I1486 Aliivibrio salmonicida LFI1238 cold-shock protein YP_002262925.1 1596113 D 316275 CDS YP_002262926.1 209694997 6987136 1596738..1597091 1 NC_011312.1 hypothetical protein 1597091 6987136 VSAL_I1487 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262926.1 1596738 D 316275 CDS YP_002262927.1 209694998 6987137 1597367..1598788 1 NC_011312.1 hypothetical protein 1598788 6987137 VSAL_I1488 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262927.1 1597367 D 316275 CDS YP_002262928.1 209694999 6987138 1599131..1599523 1 NC_011312.1 hypothetical protein 1599523 6987138 VSAL_I1489 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262928.1 1599131 D 316275 CDS YP_002262929.1 209695000 6987139 complement(1599692..1599907) 1 NC_011312.1 hypothetical protein 1599907 6987139 VSAL_I1490 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262929.1 1599692 R 316275 CDS YP_002262930.1 209695001 6987140 1600270..1600692 1 NC_011312.1 transposase 1600692 6987140 VSAL_I1491 Aliivibrio salmonicida LFI1238 transposase YP_002262930.1 1600270 D 316275 CDS YP_002262931.1 209695002 6987141 1600710..1601276 1 NC_011312.1 transposase 1601276 6987141 VSAL_I1492 Aliivibrio salmonicida LFI1238 transposase YP_002262931.1 1600710 D 316275 CDS YP_002262932.1 209695003 6989017 1604231..1604734 1 NC_011312.1 acetyltransferase 1604734 6989017 VSAL_I1494 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002262932.1 1604231 D 316275 CDS YP_002262933.1 209695004 6987143 complement(1604742..1605449) 1 NC_011312.1 Weakly similar to Myxococcus xanthus CsgA UniProt:P21158 blastp scores: E()=4e-09; hypothetical protein 1605449 6987143 VSAL_I1495 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262933.1 1604742 R 316275 CDS YP_002262934.1 209695005 6987145 1606036..1606524 1 NC_011312.1 lipoprotein 1606524 6987145 VSAL_I1497 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262934.1 1606036 D 316275 CDS YP_002262935.1 209695006 6987146 1606663..1606860 1 NC_011312.1 hypothetical protein 1606860 6987146 VSAL_I1498 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262935.1 1606663 D 316275 CDS YP_002262936.1 209695007 6987147 1607000..1607149 1 NC_011312.1 hypothetical protein 1607149 6987147 VSAL_I1499 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262936.1 1607000 D 316275 CDS YP_002262937.1 209695008 6987148 1607153..1607434 1 NC_011312.1 hypothetical protein 1607434 6987148 VSAL_I1500 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262937.1 1607153 D 316275 CDS YP_002262938.1 209695009 6987149 complement(1607512..1608273) 1 NC_011312.1 hypothetical protein 1608273 6987149 VSAL_I1501 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262938.1 1607512 R 316275 CDS YP_002262939.1 209695010 6987150 1608471..1608926 1 NC_011312.1 acyltransferase 1608926 6987150 VSAL_I1502 Aliivibrio salmonicida LFI1238 acyltransferase YP_002262939.1 1608471 D 316275 CDS YP_002262940.1 209695011 6987151 complement(1608986..1609150) 1 NC_011312.1 hypothetical protein 1609150 6987151 VSAL_I1503 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262940.1 1608986 R 316275 CDS YP_002262941.1 209695012 6987152 1609303..1609851 1 NC_011312.1 maltose O-acetyltransferase 1609851 maa 6987152 maa Aliivibrio salmonicida LFI1238 maltose O-acetyltransferase YP_002262941.1 1609303 D 316275 CDS YP_002262942.1 209695013 6988773 1609971..1610396 1 NC_011312.1 hypothetical protein 1610396 6988773 VSAL_I1505 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262942.1 1609971 D 316275 CDS YP_002262943.1 209695014 6987153 1610424..1611224 1 NC_011312.1 phenazine biosynthesis-like protein 1611224 6987153 VSAL_I1506 Aliivibrio salmonicida LFI1238 phenazine biosynthesis-like protein YP_002262943.1 1610424 D 316275 CDS YP_002262944.1 209695015 6987154 1611272..1611775 1 NC_011312.1 acetyltransferase 1611775 6987154 VSAL_I1507 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002262944.1 1611272 D 316275 CDS YP_002262945.1 209695016 6987155 complement(1611858..1612607) 1 NC_011312.1 Similar to Mentha piperita (peppermint) Omt5 UniProt:Q6VMV7 (361 aa) blastp scores: E()=6e-05; methyltransferase 1612607 OMT5 6987155 OMT5 Aliivibrio salmonicida LFI1238 methyltransferase YP_002262945.1 1611858 R 316275 CDS YP_002262946.1 209695017 6988932 1612856..1613518 1 NC_011312.1 hypothetical protein 1613518 6988932 VSAL_I1509 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262946.1 1612856 D 316275 CDS YP_002262947.1 209695018 6987156 1613721..1614158 1 NC_011312.1 hypothetical protein 1614158 6987156 VSAL_I1510 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262947.1 1613721 D 316275 CDS YP_002262948.1 209695019 6987157 1614222..1614635 1 NC_011312.1 hypothetical protein 1614635 6987157 VSAL_I1511 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262948.1 1614222 D 316275 CDS YP_002262949.1 209695020 6987158 1614657..1614923 1 NC_011312.1 membrane protein 1614923 6987158 VSAL_I1512 Aliivibrio salmonicida LFI1238 membrane protein YP_002262949.1 1614657 D 316275 CDS YP_002262950.1 209695021 6987159 1614978..1615610 1 NC_011312.1 metal dependent phosphohydrolase 1615610 6987159 VSAL_I1513 Aliivibrio salmonicida LFI1238 metal dependent phosphohydrolase YP_002262950.1 1614978 D 316275 CDS YP_002262951.1 209695022 6987160 complement(1615691..1617301) 1 NC_011312.1 FAD dependent oxidoreductase 1617301 6987160 VSAL_I1514 Aliivibrio salmonicida LFI1238 FAD dependent oxidoreductase YP_002262951.1 1615691 R 316275 CDS YP_002262952.1 209695023 6987161 complement(1617403..1618347) 1 NC_011312.1 Similar to Pseudomonas aeruginosa HTH-type transcriptional regulator TrpI UniProt:P11720 (295 aa) fasta scores: E()=7.8e-16, 29.010% id in 293 aa; LysR family transcriptional regulator 1618347 6987161 VSAL_I1515 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002262952.1 1617403 R 316275 CDS YP_002262953.1 209695024 6987162 1618507..1619874 1 NC_011312.1 Similar to Pseudomonas aeruginosa Multidrug resistance protein PmpM UniProt:Q9I3Y3 (477 aa) fasta scores: E()=1.3e-20, 27.887% id in 459 aa; multidrug resistance protein 1619874 6987162 VSAL_I1516 Aliivibrio salmonicida LFI1238 multidrug resistance protein YP_002262953.1 1618507 D 316275 CDS YP_002262954.1 209695025 6987163 1619937..1620593 1 NC_011312.1 hypothetical protein 1620593 6987163 VSAL_I1517 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262954.1 1619937 D 316275 CDS YP_002262955.1 209695026 6987164 1620854..1620979 1 NC_011312.1 hypothetical protein 1620979 6987164 VSAL_I1518 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262955.1 1620854 D 316275 CDS YP_002262956.1 209695027 6987165 1621031..1621381 1 NC_011312.1 hypothetical protein 1621381 6987165 VSAL_I1519 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262956.1 1621031 D 316275 CDS YP_002262957.1 209695028 6987166 1621436..1621981 1 NC_011312.1 hypothetical protein 1621981 6987166 VSAL_I1520 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262957.1 1621436 D 316275 CDS YP_002262958.1 209695029 6987168 complement(1622833..1623714) 1 NC_011312.1 transposase 1623714 6987168 VSAL_I1522 Aliivibrio salmonicida LFI1238 transposase YP_002262958.1 1622833 R 316275 CDS YP_002262959.1 209695030 6987170 1625550..1626425 1 NC_011312.1 Similar to Escherichia coli KefA UniProt:P77338 (1120 aa) blastp scores: E()=4e-12; mechanosensitive ion channel 1626425 6987170 VSAL_I1524 Aliivibrio salmonicida LFI1238 mechanosensitive ion channel YP_002262959.1 1625550 D 316275 CDS YP_002262960.1 209695031 6987172 complement(1628943..1629386) 1 NC_011312.1 membrane protein 1629386 6987172 VSAL_I1526 Aliivibrio salmonicida LFI1238 membrane protein YP_002262960.1 1628943 R 316275 CDS YP_002262961.1 209695032 6987173 1629520..1630077 1 NC_011312.1 TetR family transcriptional regulator 1630077 6987173 VSAL_I1527 Aliivibrio salmonicida LFI1238 TetR family transcriptional regulator YP_002262961.1 1629520 D 316275 CDS YP_002262962.1 209695033 6987174 1630109..1630489 1 NC_011312.1 hypothetical protein 1630489 6987174 VSAL_I1528 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262962.1 1630109 D 316275 CDS YP_002262963.1 209695034 6987175 1630666..1631229 1 NC_011312.1 glutaredoxin 1631229 6987175 VSAL_I1529 Aliivibrio salmonicida LFI1238 glutaredoxin YP_002262963.1 1630666 D 316275 CDS YP_002262964.1 209695035 6987176 1631245..1631928 1 NC_011312.1 membrane protein 1631928 6987176 VSAL_I1530 Aliivibrio salmonicida LFI1238 membrane protein YP_002262964.1 1631245 D 316275 CDS YP_002262965.1 209695036 6987177 1632037..1632198 1 NC_011312.1 hypothetical protein 1632198 6987177 VSAL_I1531 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262965.1 1632037 D 316275 CDS YP_002262966.1 209695037 6987178 1632486..1633874 1 NC_011312.1 Similar to Pseudomonas sp. Atrazine chlorohydrolase AtzA UniProt:P72156 (474 aa) fasta scores: E()=2.8e-21,27.500% id in 440 aa; amidohydrolase 1633874 6987178 VSAL_I1532 Aliivibrio salmonicida LFI1238 amidohydrolase YP_002262966.1 1632486 D 316275 CDS YP_002262967.1 209695038 6987179 1634028..1634342 1 NC_011312.1 hypothetical protein 1634342 6987179 VSAL_I1533 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262967.1 1634028 D 316275 CDS YP_002262968.1 209695039 6987180 complement(1634685..1635446) 1 NC_011312.1 Similar to Pseudomonas aeruginosa Cyclohexadienyl dehydratase precursor PheC UniProt:Q01269 (268 aa) fasta scores: E()=3.7e-25, 39.910% id in 223 aa; extracellular solute-binding protein 1635446 6987180 VSAL_I1534 Aliivibrio salmonicida LFI1238 extracellular solute-binding protein YP_002262968.1 1634685 R 316275 CDS YP_002262969.1 209695040 6987181 1635734..1636627 1 NC_011312.1 membrane protein 1636627 6987181 VSAL_I1535 Aliivibrio salmonicida LFI1238 membrane protein YP_002262969.1 1635734 D 316275 CDS YP_002262970.1 209695041 6987182 1636724..1637290 1 NC_011312.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 1637290 yeiP 6987182 yeiP Aliivibrio salmonicida LFI1238 elongation factor P YP_002262970.1 1636724 D 316275 CDS YP_002262971.1 209695042 6989428 complement(1637373..1638545) 1 NC_011312.1 membrane protein 1638545 6989428 VSAL_I1537 Aliivibrio salmonicida LFI1238 membrane protein YP_002262971.1 1637373 R 316275 CDS YP_002262972.1 209695043 6987183 complement(1638580..1640001) 1 NC_011312.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1640001 yebU 6987183 yebU Aliivibrio salmonicida LFI1238 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_002262972.1 1638580 R 316275 CDS YP_002262973.1 209695044 6987184 complement(1640170..1642812) 1 NC_011312.1 hypothetical protein 1642812 6987184 VSAL_I1539 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262973.1 1640170 R 316275 CDS YP_002262974.1 209695045 6987185 complement(1642790..1644016) 1 NC_011312.1 paraquat-inducible membrane protein A 1644016 6987185 VSAL_I1540 Aliivibrio salmonicida LFI1238 paraquat-inducible membrane protein A YP_002262974.1 1642790 R 316275 CDS YP_002262975.1 209695046 6987186 complement(1644034..1645827) 1 NC_011312.1 Similar to Escherichia coli Lipid A export ATP-binding/permease protein MsbA UniProt:P60752 (582 aa) blastp scores: E()=2e-61. Expression may be regulated by Fur; ABC transporter ATP-binding protein 1645827 6987186 VSAL_I1541 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002262975.1 1644034 R 316275 CDS YP_002262976.1 209695047 6987187 1645945..1646397 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 1646397 6987187 VSAL_I1542 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262976.1 1645945 D 316275 CDS YP_002262977.1 209695048 6987188 1646621..1647253 1 NC_011312.1 affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 1647253 proQ 6987188 proQ Aliivibrio salmonicida LFI1238 solute/DNA competence effector YP_002262977.1 1646621 D 316275 CDS YP_002262978.1 209695049 6989014 1647271..1649289 1 NC_011312.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1649289 prc 6989014 prc Aliivibrio salmonicida LFI1238 carboxy-terminal protease YP_002262978.1 1647271 D 316275 CDS YP_002262979.1 209695050 6989002 1649358..1650140 1 NC_011312.1 hypothetical protein 1650140 6989002 VSAL_I1545 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262979.1 1649358 D 316275 CDS YP_002262980.1 209695051 6988959 1653013..1653237 1 NC_011312.1 hypothetical protein 1653237 6988959 VSAL_I1547 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262980.1 1653013 D 316275 CDS YP_002262981.1 209695052 6988588 1658502..1659512 1 NC_011312.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1659512 pyrD 6988588 pyrD Aliivibrio salmonicida LFI1238 dihydroorotate dehydrogenase 2 YP_002262981.1 1658502 D 316275 CDS YP_002262982.1 209695053 6989049 1659678..1660268 1 NC_011312.1 Possible alternative translational start site after codon 17; hypothetical protein 1660268 6989049 VSAL_I1550 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262982.1 1659678 D 316275 CDS YP_002262983.1 209695054 6987191 1660800..1662956 1 NC_011312.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1662956 rlmL 6987191 rlmL Aliivibrio salmonicida LFI1238 23S rRNA m(2)G2445 methyltransferase YP_002262983.1 1660800 D 316275 CDS YP_002262984.1 209695055 6987192 1662962..1663204 1 NC_011312.1 glutaredoxin 1663204 6987192 VSAL_I1552 Aliivibrio salmonicida LFI1238 glutaredoxin YP_002262984.1 1662962 D 316275 CDS YP_002262985.1 209695056 6987193 1663185..1665095 1 NC_011312.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1665095 uup 6987193 uup Aliivibrio salmonicida LFI1238 ABC transporter ATPase YP_002262985.1 1663185 D 316275 CDS YP_002262986.1 209695057 6989364 1665104..1666768 1 NC_011312.1 hypothetical protein 1666768 6989364 VSAL_I1554 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262986.1 1665104 D 316275 CDS YP_002262987.1 209695058 6987194 1666969..1667142 1 NC_011312.1 ribosome modulation factor 1667142 rmf 6987194 rmf Aliivibrio salmonicida LFI1238 ribosome modulation factor YP_002262987.1 1666969 D 316275 CDS YP_002262988.1 209695059 6989114 complement(1667298..1667816) 1 NC_011312.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1667816 fabA 6989114 fabA Aliivibrio salmonicida LFI1238 3-hydroxydecanoyl-ACP dehydratase YP_002262988.1 1667298 R 316275 CDS YP_002262989.1 209695060 6988463 complement(1667882..1669549) 1 NC_011312.1 Similar to Escherichia coli protease La homolog YcbZ UniProt:P75867 (586 aa) fasta scores: E()=6.7e-67, 41.525% id in 472 aa; protease La-like protein 1669549 6988463 VSAL_I1557 Aliivibrio salmonicida LFI1238 protease La-like protein YP_002262989.1 1667882 R 316275 CDS YP_002262990.1 209695061 6987195 1669730..1670176 1 NC_011312.1 hypothetical protein 1670176 6987195 VSAL_I1558 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262990.1 1669730 D 316275 CDS YP_002262991.1 209695062 6987196 complement(1670230..1670781) 1 NC_011312.1 lipoprotein 1670781 6987196 VSAL_I1559 Aliivibrio salmonicida LFI1238 lipoprotein YP_002262991.1 1670230 R 316275 CDS YP_002262992.1 209695063 6987197 complement(1671140..1673233) 1 NC_011312.1 response regulator, histidine kinase 1673233 6987197 VSAL_I1560 Aliivibrio salmonicida LFI1238 response regulator, histidine kinase YP_002262992.1 1671140 R 316275 CDS YP_002262993.1 209695064 6987198 complement(1673234..1674418) 1 NC_011312.1 hypothetical protein 1674418 6987198 VSAL_I1561 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262993.1 1673234 R 316275 CDS YP_002262994.1 209695065 6987199 complement(1674517..1674972) 1 NC_011312.1 hypothetical protein 1674972 6987199 VSAL_I1562 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262994.1 1674517 R 316275 CDS YP_002262995.1 209695066 6987200 1675242..1676672 1 NC_011312.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1676672 ctaD 6987200 ctaD Aliivibrio salmonicida LFI1238 cbb3-type cytochrome c oxidase subunit I YP_002262995.1 1675242 D 316275 CDS YP_002262996.1 209695067 6988361 1676685..1677296 1 NC_011312.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1677296 fixO 6988361 fixO Aliivibrio salmonicida LFI1238 cbb3-type cytochrome c oxidase subunit II YP_002262996.1 1676685 D 316275 CDS YP_002262997.1 209695068 6988498 1677307..1677489 1 NC_011312.1 cbb3-type cytochrome oxidase subunit 1677489 6988498 VSAL_I1565 Aliivibrio salmonicida LFI1238 cbb3-type cytochrome oxidase subunit YP_002262997.1 1677307 D 316275 CDS YP_002262998.1 209695069 6987201 1677486..1678460 1 NC_011312.1 diheme cytochrome c 1678460 6987201 VSAL_I1566 Aliivibrio salmonicida LFI1238 diheme cytochrome c YP_002262998.1 1677486 D 316275 CDS YP_002262999.1 209695070 6987202 1678533..1679018 1 NC_011312.1 hypothetical protein 1679018 6987202 VSAL_I1567 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002262999.1 1678533 D 316275 CDS YP_002263000.1 209695071 6987203 1679025..1681400 1 NC_011312.1 Similar to Bradyrhizobium japonicum Nitrogen fixation protein FixI UniProt:Q59207 (730 aa) fasta scores: E()=9.9e-70, 33.884% id in 726 aa; cation-transporting ATPase 1681400 6987203 VSAL_I1568 Aliivibrio salmonicida LFI1238 cation-transporting ATPase YP_002263000.1 1679025 D 316275 CDS YP_002263001.1 209695072 6987204 1681393..1681563 1 NC_011312.1 Similar to Rhizobium meliloti Nitrogen fixation protein FixS UniProt:P18399 (55 aa) blastp scores: E()=6e-04; cytochrome oxidase maturation protein (cbb3-t) 1681563 6987204 VSAL_I1569 Aliivibrio salmonicida LFI1238 cytochrome oxidase maturation protein (cbb3-t) YP_002263001.1 1681393 D 316275 CDS YP_002263002.1 209695073 6987205 1681553..1682227 1 NC_011312.1 membrane protein 1682227 6987205 VSAL_I1570 Aliivibrio salmonicida LFI1238 membrane protein YP_002263002.1 1681553 D 316275 CDS YP_002263003.1 209695074 6987206 1682324..1683076 1 NC_011312.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1683076 fnr 6987206 fnr Aliivibrio salmonicida LFI1238 fumarate/nitrate reduction transcriptional regulator YP_002263003.1 1682324 D 316275 CDS YP_002263004.1 209695075 6988551 1683229..1684173 1 NC_011312.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1684173 uspE 6988551 uspE Aliivibrio salmonicida LFI1238 universal stress protein UspE YP_002263004.1 1683229 D 316275 CDS YP_002263005.1 209695076 6989362 1684330..1685253 1 NC_011312.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1685253 6989362 VSAL_I1573 Aliivibrio salmonicida LFI1238 C32 tRNA thiolase YP_002263005.1 1684330 D 316275 CDS YP_002263006.1 209695077 6987207 1685410..1685724 1 NC_011312.1 transposase 1685724 6987207 VSAL_I1574 Aliivibrio salmonicida LFI1238 transposase YP_002263006.1 1685410 D 316275 CDS YP_002263007.1 209695078 6987208 1685721..1686068 1 NC_011312.1 transposase 1686068 6987208 VSAL_I1575 Aliivibrio salmonicida LFI1238 transposase YP_002263007.1 1685721 D 316275 CDS YP_002263008.1 209695079 6987209 1686140..1687627 1 NC_011312.1 transposase 1687627 6987209 VSAL_I1576 Aliivibrio salmonicida LFI1238 transposase YP_002263008.1 1686140 D 316275 CDS YP_002263009.1 209695080 6987210 complement(1687651..1688304) 1 NC_011312.1 hypothetical protein 1688304 6987210 VSAL_I1577 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263009.1 1687651 R 316275 CDS YP_002263010.1 209695081 6987211 complement(1688306..1689043) 1 NC_011312.1 lipoprotein 1689043 6987211 VSAL_I1578 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263010.1 1688306 R 316275 CDS YP_002263011.1 209695082 6987212 complement(1689051..1689860) 1 NC_011312.1 membrane protein 1689860 6987212 VSAL_I1579 Aliivibrio salmonicida LFI1238 membrane protein YP_002263011.1 1689051 R 316275 CDS YP_002263012.1 209695083 6987213 1690197..1691315 1 NC_011312.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 1691315 potA 6987213 potA Aliivibrio salmonicida LFI1238 putrescine/spermidine ABC transporter ATPase YP_002263012.1 1690197 D 316275 CDS YP_002263013.1 209695084 6988994 1691299..1692156 1 NC_011312.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter 1692156 potB 6988994 potB Aliivibrio salmonicida LFI1238 spermidine/putrescine ABC transporter YP_002263013.1 1691299 D 316275 CDS YP_002263014.1 209695085 6988995 1692156..1692926 1 NC_011312.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter 1692926 potC 6988995 potC Aliivibrio salmonicida LFI1238 spermidine/putrescine ABC transporter YP_002263014.1 1692156 D 316275 CDS YP_002263015.1 209695086 6988996 1692980..1694068 1 NC_011312.1 Possible alternative translational start site after codon 13; spermidine/putrescine-binding periplasmic protein precursor (SPBP) 1694068 potD 6988996 potD Aliivibrio salmonicida LFI1238 spermidine/putrescine-binding periplasmic protein precursor (SPBP) YP_002263015.1 1692980 D 316275 CDS YP_002263016.1 209695087 6988997 1694251..1695294 1 NC_011312.1 Expression may be stress-induced; spermidine/putrescine-binding periplasmic protein precursor (SPBP) 1695294 potD 6988997 potD Aliivibrio salmonicida LFI1238 spermidine/putrescine-binding periplasmic protein precursor (SPBP) YP_002263016.1 1694251 D 316275 CDS YP_002263017.1 209695088 6988998 complement(1695383..1696096) 1 NC_011312.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1696096 npdA 6988998 npdA Aliivibrio salmonicida LFI1238 NAD-dependent deacetylase YP_002263017.1 1695383 R 316275 CDS YP_002263018.1 209695089 6988905 1696300..1697211 1 NC_011312.1 LysR family transcriptional regulator 1697211 6988905 VSAL_I1586 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002263018.1 1696300 D 316275 CDS YP_002263019.1 209695090 6987214 1697451..1698671 1 NC_011312.1 Similar to Escherichia coli inner membrane transport protein YeiJ UniProt:P33021 (416 aa) fasta scores: E()=8.5e-59, 43.301% id in 418 aa; sodium-dependent nucleoside transporter 1698671 6987214 VSAL_I1587 Aliivibrio salmonicida LFI1238 sodium-dependent nucleoside transporter YP_002263019.1 1697451 D 316275 CDS YP_002263020.1 209695091 6987215 complement(1698752..1699042) 1 NC_011312.1 hypothetical protein 1699042 6987215 VSAL_I1588 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263020.1 1698752 R 316275 CDS YP_002263021.1 209695092 6987216 complement(1699160..1699471) 1 NC_011312.1 hypothetical protein 1699471 6987216 VSAL_I1589 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263021.1 1699160 R 316275 CDS YP_002263022.1 209695093 6987217 complement(1699484..1700140) 1 NC_011312.1 quinolone resistance determinant QnrC 1700140 qnr 6987217 qnr Aliivibrio salmonicida LFI1238 quinolone resistance determinant QnrC YP_002263022.1 1699484 R 316275 CDS YP_002263023.1 209695094 6989056 complement(1700575..1700991) 1 NC_011312.1 hypothetical protein 1700991 6989056 VSAL_I1591 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263023.1 1700575 R 316275 CDS YP_002263024.1 209695095 6987218 complement(1701252..1701584) 1 NC_011312.1 hypothetical protein 1701584 6987218 VSAL_I1592 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263024.1 1701252 R 316275 CDS YP_002263025.1 209695096 6987219 complement(1701633..1701962) 1 NC_011312.1 hypothetical protein 1701962 6987219 VSAL_I1593 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263025.1 1701633 R 316275 CDS YP_002263026.1 209695097 6987220 complement(1701980..1702384) 1 NC_011312.1 NUDIX hydrolase 1702384 6987220 VSAL_I1594 Aliivibrio salmonicida LFI1238 NUDIX hydrolase YP_002263026.1 1701980 R 316275 CDS YP_002263027.1 209695098 6987221 1702528..1703538 1 NC_011312.1 lipoprotein 1703538 6987221 VSAL_I1595 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263027.1 1702528 D 316275 CDS YP_002263028.1 209695099 6987222 complement(1703556..1704059) 1 NC_011312.1 membrane protein 1704059 6987222 VSAL_I1596 Aliivibrio salmonicida LFI1238 membrane protein YP_002263028.1 1703556 R 316275 CDS YP_002263029.1 209695100 6987223 complement(1704213..1706168) 1 NC_011312.1 Possible alternative translational start site after codon 10; soluble lytic murein transglycosylase precursor 1706168 6987223 VSAL_I1597 Aliivibrio salmonicida LFI1238 soluble lytic murein transglycosylase precursor YP_002263029.1 1704213 R 316275 CDS YP_002263030.1 209695101 6987224 complement(1706247..1706543) 1 NC_011312.1 membrane protein 1706543 6987224 VSAL_I1598 Aliivibrio salmonicida LFI1238 membrane protein YP_002263030.1 1706247 R 316275 CDS YP_002263031.1 209695102 6987225 1706725..1708062 1 NC_011312.1 polysaccharide deacetylase 1708062 6987225 VSAL_I1599 Aliivibrio salmonicida LFI1238 polysaccharide deacetylase YP_002263031.1 1706725 D 316275 CDS YP_002263032.1 209695103 6987226 complement(1708107..1708508) 1 NC_011312.1 hypothetical protein 1708508 6987226 VSAL_I1600 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263032.1 1708107 R 316275 CDS YP_002263033.1 209695104 6987227 1708787..1709668 1 NC_011312.1 transposase 1709668 6987227 VSAL_I1601 Aliivibrio salmonicida LFI1238 transposase YP_002263033.1 1708787 D 316275 CDS YP_002263034.1 209695105 6987229 1710845..1711087 1 NC_011312.1 hypothetical protein 1711087 6987229 VSAL_I1603 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263034.1 1710845 D 316275 CDS YP_002263035.1 209695106 6987231 complement(1711527..1712408) 1 NC_011312.1 transposase 1712408 6987231 VSAL_I1605 Aliivibrio salmonicida LFI1238 transposase YP_002263035.1 1711527 R 316275 CDS YP_002263036.1 209695107 6987232 1712535..1712927 1 NC_011312.1 hypothetical protein 1712927 6987232 VSAL_I1606 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263036.1 1712535 D 316275 CDS YP_002263037.1 209695108 6987233 complement(1713042..1714034) 1 NC_011312.1 3',5'-cyclic-nucleotide phosphodiesterase 1714034 6987233 VSAL_I1607 Aliivibrio salmonicida LFI1238 3',5'-cyclic-nucleotide phosphodiesterase YP_002263037.1 1713042 R 316275 CDS YP_002263038.1 209695109 6987234 1714289..1715311 1 NC_011312.1 Expression may be regulated by Fur; GalR family transcriptional regulator 1715311 galR 6987234 galR Aliivibrio salmonicida LFI1238 GalR family transcriptional regulator YP_002263038.1 1714289 D 316275 CDS YP_002263039.1 209695110 6988581 1715448..1716902 1 NC_011312.1 Similar to Bacillus subtilis Malate-2H(+)/Na(+)-lactate antiporter MleN UniProt:P54571 (468 aa) fasta scores: E()=3.1e-28, 33.772% id in 456 aa; sodium/proton antiporter 1716902 6988581 VSAL_I1609 Aliivibrio salmonicida LFI1238 sodium/proton antiporter YP_002263039.1 1715448 D 316275 CDS YP_002263040.1 209695111 6987235 1716912..1718084 1 NC_011312.1 class I and II aminotransferase 1718084 6987235 VSAL_I1610 Aliivibrio salmonicida LFI1238 class I and II aminotransferase YP_002263040.1 1716912 D 316275 CDS YP_002263041.1 209695112 6987236 complement(1718165..1718992) 1 NC_011312.1 AraC family transcriptional regulator 1718992 6987236 VSAL_I1611 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002263041.1 1718165 R 316275 CDS YP_002263042.1 209695113 6987237 1719060..1719956 1 NC_011312.1 integral membrane protein 1719956 6987237 VSAL_I1612 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002263042.1 1719060 D 316275 CDS YP_002263043.1 209695114 6987238 complement(1720037..1721143) 1 NC_011312.1 mannose-6-phosphate isomerase (phosphomannose isomerase) 1721143 manA 6987238 manA Aliivibrio salmonicida LFI1238 mannose-6-phosphate isomerase (phosphomannose isomerase) YP_002263043.1 1720037 R 316275 CDS YP_002263044.1 209695115 6988779 complement(1721143..1722312) 1 NC_011312.1 cystathionine beta-lyase 1722312 malY 6988779 malY Aliivibrio salmonicida LFI1238 cystathionine beta-lyase YP_002263044.1 1721143 R 316275 CDS YP_002263045.1 209695116 6988778 complement(1722394..1723971) 1 NC_011312.1 phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; bifunctional PTS system maltose and glucose-specific transporter subunits IICB 1723971 malX 6988778 malX Aliivibrio salmonicida LFI1238 bifunctional PTS system maltose and glucose-specific transporter subunits IICB YP_002263045.1 1722394 R 316275 CDS YP_002263046.1 209695117 6988777 1724094..1724516 1 NC_011312.1 transposase 1724516 6988777 VSAL_I1616 Aliivibrio salmonicida LFI1238 transposase YP_002263046.1 1724094 D 316275 CDS YP_002263047.1 209695118 6987239 1724534..1725100 1 NC_011312.1 transposase 1725100 6987239 VSAL_I1617 Aliivibrio salmonicida LFI1238 transposase YP_002263047.1 1724534 D 316275 CDS YP_002263048.1 209695119 6987240 1725340..1726362 1 NC_011312.1 regulates malXY which are involved in maltose-glucose transport; DNA-binding transcriptional repressor MalI 1726362 malI 6987240 malI Aliivibrio salmonicida LFI1238 DNA-binding transcriptional repressor MalI YP_002263048.1 1725340 D 316275 CDS YP_002263049.1 209695120 6988775 complement(1726446..1727318) 1 NC_011312.1 integral membrane protein 1727318 6988775 VSAL_I1619 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002263049.1 1726446 R 316275 CDS YP_002263050.1 209695121 6987241 1727439..1727861 1 NC_011312.1 transposase 1727861 6987241 VSAL_I1620 Aliivibrio salmonicida LFI1238 transposase YP_002263050.1 1727439 D 316275 CDS YP_002263051.1 209695122 6987242 1727879..1728445 1 NC_011312.1 transposase 1728445 6987242 VSAL_I1621 Aliivibrio salmonicida LFI1238 transposase YP_002263051.1 1727879 D 316275 CDS YP_002263052.1 209695123 6987243 complement(1728578..1728988) 1 NC_011312.1 cell wall lytic enzyme 1728988 6987243 VSAL_I1622 Aliivibrio salmonicida LFI1238 cell wall lytic enzyme YP_002263052.1 1728578 R 316275 CDS YP_002263053.1 209695124 6987244 1729423..1730166 1 NC_011312.1 sucrose-6F-phosphate phosphohydrolase 1730166 6987244 VSAL_I1623 Aliivibrio salmonicida LFI1238 sucrose-6F-phosphate phosphohydrolase YP_002263053.1 1729423 D 316275 CDS YP_002263054.1 209695125 6987245 complement(1730343..1730993) 1 NC_011312.1 isoprenoid biosynthesis protein with amidotransferase-like domain 1730993 elbB 6987245 elbB Aliivibrio salmonicida LFI1238 isoprenoid biosynthesis protein with amidotransferase-like domain YP_002263054.1 1730343 R 316275 CDS YP_002263055.1 209695126 6988439 1731257..1731661 1 NC_011312.1 hypothetical protein 1731661 6988439 VSAL_I1625 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263055.1 1731257 D 316275 CDS YP_002263056.1 209695127 6987246 1731713..1732441 1 NC_011312.1 MltA-interacting protein MipA 1732441 6987246 VSAL_I1626 Aliivibrio salmonicida LFI1238 MltA-interacting protein MipA YP_002263056.1 1731713 D 316275 CDS YP_002263057.1 209695128 6987247 1732609..1733025 1 NC_011312.1 membrane protein 1733025 6987247 VSAL_I1627 Aliivibrio salmonicida LFI1238 membrane protein YP_002263057.1 1732609 D 316275 CDS YP_002263058.1 209695129 6987248 1733066..1734028 1 NC_011312.1 radical SAM superfamily protein 1734028 6987248 VSAL_I1628 Aliivibrio salmonicida LFI1238 radical SAM superfamily protein YP_002263058.1 1733066 D 316275 CDS YP_002263059.1 209695130 6987250 1734710..1735324 1 NC_011312.1 hypothetical protein 1735324 6987250 VSAL_I1630 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263059.1 1734710 D 316275 CDS YP_002263060.1 209695131 6987252 1736783..1737205 1 NC_011312.1 transposase 1737205 6987252 VSAL_I1632 Aliivibrio salmonicida LFI1238 transposase YP_002263060.1 1736783 D 316275 CDS YP_002263061.1 209695132 6987253 1737223..1737789 1 NC_011312.1 transposase 1737789 6987253 VSAL_I1633 Aliivibrio salmonicida LFI1238 transposase YP_002263061.1 1737223 D 316275 CDS YP_002263062.1 209695133 6987254 1737876..1738826 1 NC_011312.1 hypothetical protein 1738826 6987254 VSAL_I1634 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263062.1 1737876 D 316275 CDS YP_002263063.1 209695134 6987255 1738833..1740002 1 NC_011312.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 1740002 mtnK 6987255 mtnK Aliivibrio salmonicida LFI1238 methylthioribose kinase YP_002263063.1 1738833 D 316275 CDS YP_002263064.1 209695135 6987256 complement(1740065..1741708) 1 NC_011312.1 Weakly similar to Vibrio cholerae TcpI UniProt:P29486 (620 aa) fasta scores: E()=1.1e-28, 33.588% id in 393 aa; methyl-accepting chemotaxis protein 1741708 6987256 VSAL_I1636 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002263064.1 1740065 R 316275 CDS YP_002263065.1 209695136 6987257 1741945..1742901 1 NC_011312.1 transposase 1742901 6987257 VSAL_I1637 Aliivibrio salmonicida LFI1238 transposase YP_002263065.1 1741945 D 316275 CDS YP_002263066.1 209695137 6987258 1743084..1743371 1 NC_011312.1 phage protein 1743371 6987258 VSAL_I1638 Aliivibrio salmonicida LFI1238 phage protein YP_002263066.1 1743084 D 316275 CDS YP_002263067.1 209695138 6987259 1743368..1743871 1 NC_011312.1 phage protein 1743871 6987259 VSAL_I1639 Aliivibrio salmonicida LFI1238 phage protein YP_002263067.1 1743368 D 316275 CDS YP_002263068.1 209695139 6987260 complement(1744160..1744405) 1 NC_011312.1 phage protein 1744405 6987260 VSAL_I1640 Aliivibrio salmonicida LFI1238 phage protein YP_002263068.1 1744160 R 316275 CDS YP_002263069.1 209695140 6987261 complement(1744395..1744658) 1 NC_011312.1 phage protein 1744658 6987261 VSAL_I1641 Aliivibrio salmonicida LFI1238 phage protein YP_002263069.1 1744395 R 316275 CDS YP_002263070.1 209695141 6987262 complement(1744838..1745956) 1 NC_011312.1 phage protein 1745956 6987262 VSAL_I1642 Aliivibrio salmonicida LFI1238 phage protein YP_002263070.1 1744838 R 316275 CDS YP_002263071.1 209695142 6987263 complement(1745949..1746257) 1 NC_011312.1 phage protein 1746257 6987263 VSAL_I1643 Aliivibrio salmonicida LFI1238 phage protein YP_002263071.1 1745949 R 316275 CDS YP_002263072.1 209695143 6987264 complement(1746239..1746901) 1 NC_011312.1 phage protein 1746901 6987264 VSAL_I1644 Aliivibrio salmonicida LFI1238 phage protein YP_002263072.1 1746239 R 316275 CDS YP_002263073.1 209695144 6987265 complement(1747082..1747396) 1 NC_011312.1 DNA-binding protein, phage gene 1747396 6987265 VSAL_I1645 Aliivibrio salmonicida LFI1238 DNA-binding protein, phage gene YP_002263073.1 1747082 R 316275 CDS YP_002263074.1 209695145 6987266 complement(1747383..1747739) 1 NC_011312.1 phage protein 1747739 6987266 VSAL_I1646 Aliivibrio salmonicida LFI1238 phage protein YP_002263074.1 1747383 R 316275 CDS YP_002263075.1 209695146 6987267 complement(1747924..1748379) 1 NC_011312.1 membrane protein, phage gene 1748379 6987267 VSAL_I1647 Aliivibrio salmonicida LFI1238 membrane protein, phage gene YP_002263075.1 1747924 R 316275 CDS YP_002263076.1 209695147 6987268 complement(1748538..1748993) 1 NC_011312.1 phage protein 1748993 6987268 VSAL_I1648 Aliivibrio salmonicida LFI1238 phage protein YP_002263076.1 1748538 R 316275 CDS YP_002263077.1 209695148 6987269 complement(1749138..1749884) 1 NC_011312.1 membrane protein, phage gene 1749884 6987269 VSAL_I1649 Aliivibrio salmonicida LFI1238 membrane protein, phage gene YP_002263077.1 1749138 R 316275 CDS YP_002263078.1 209695149 6987270 complement(1750329..1750532) 1 NC_011312.1 Doubtful CDS, poor translational start site; membrane protein, phage gene 1750532 6987270 VSAL_I1650 Aliivibrio salmonicida LFI1238 membrane protein, phage gene YP_002263078.1 1750329 R 316275 CDS YP_002263079.1 209695150 6987271 complement(1750561..1751307) 1 NC_011312.1 phage protein 1751307 6987271 VSAL_I1651 Aliivibrio salmonicida LFI1238 phage protein YP_002263079.1 1750561 R 316275 CDS YP_002263080.1 209695151 6987272 complement(1751427..1752308) 1 NC_011312.1 transposase 1752308 6987272 VSAL_I1652 Aliivibrio salmonicida LFI1238 transposase YP_002263080.1 1751427 R 316275 CDS YP_002263081.1 209695152 6987274 1753065..1753376 1 NC_011312.1 transposase 1753376 6987274 VSAL_I1654 Aliivibrio salmonicida LFI1238 transposase YP_002263081.1 1753065 D 316275 CDS YP_002263082.1 209695153 6987275 1753373..1753720 1 NC_011312.1 transposase 1753720 6987275 VSAL_I1655 Aliivibrio salmonicida LFI1238 transposase YP_002263082.1 1753373 D 316275 CDS YP_002263083.1 209695154 6987276 1753792..1755279 1 NC_011312.1 transposase 1755279 6987276 VSAL_I1656 Aliivibrio salmonicida LFI1238 transposase YP_002263083.1 1753792 D 316275 CDS YP_002263084.1 209695155 6987278 1756764..1757726 1 NC_011312.1 Similar to Elizabethkingia miricola n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase precursor UniProt:Q47898 (340 aa) fasta scores: E()=7.5e-31, 37.050% id in 278 aa; glycosylasparaginase 1757726 6987278 VSAL_I1658 Aliivibrio salmonicida LFI1238 glycosylasparaginase YP_002263084.1 1756764 D 316275 CDS YP_002263085.1 209695156 6987279 1757741..1758046 1 NC_011312.1 PTS system, Lactose/Cellobiose specific IIB subunit 1758046 6987279 VSAL_I1659 Aliivibrio salmonicida LFI1238 PTS system, Lactose/Cellobiose specific IIB subunit YP_002263085.1 1757741 D 316275 CDS YP_002263086.1 209695157 6987280 1758057..1758377 1 NC_011312.1 PTS system lactose/cellobiose specific transporter subunit IIA 1758377 chbA 6987280 chbA Aliivibrio salmonicida LFI1238 PTS system lactose/cellobiose specific transporter subunit IIA YP_002263086.1 1758057 D 316275 CDS YP_002263087.1 209695158 6987281 1758749..1759063 1 NC_011312.1 transposase 1759063 6987281 VSAL_I1662 Aliivibrio salmonicida LFI1238 transposase YP_002263087.1 1758749 D 316275 CDS YP_002263088.1 209695159 6987282 1759060..1759407 1 NC_011312.1 transposase 1759407 6987282 VSAL_I1663 Aliivibrio salmonicida LFI1238 transposase YP_002263088.1 1759060 D 316275 CDS YP_002263089.1 209695160 6987283 1759479..1760966 1 NC_011312.1 transposase 1760966 6987283 VSAL_I1664 Aliivibrio salmonicida LFI1238 transposase YP_002263089.1 1759479 D 316275 CDS YP_002263090.1 209695161 6987284 1761156..1761431 1 NC_011312.1 hypothetical protein 1761431 6987284 VSAL_I1665 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263090.1 1761156 D 316275 CDS YP_002263091.1 209695162 6987285 1761434..1761961 1 NC_011312.1 hypothetical protein 1761961 6987285 VSAL_I1666 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263091.1 1761434 D 316275 CDS YP_002263092.1 209695163 6987286 complement(1761998..1762663) 1 NC_011312.1 hypothetical protein 1762663 6987286 VSAL_I1667 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263092.1 1761998 R 316275 CDS YP_002263093.1 209695164 6987287 1763023..1763442 1 NC_011312.1 small heat shock protein IbpA (16 kDa heat shock protein A) 1763442 ibpA 6987287 ibpA Aliivibrio salmonicida LFI1238 small heat shock protein IbpA (16 kDa heat shock protein A) YP_002263093.1 1763023 D 316275 CDS YP_002263094.1 209695165 6988697 1763657..1765555 1 NC_011312.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1765555 dnaK 6988697 dnaK Aliivibrio salmonicida LFI1238 molecular chaperone DnaK YP_002263094.1 1763657 D 316275 CDS YP_002263095.1 209695166 6988417 1765750..1766061 1 NC_011312.1 transposase 1766061 6988417 VSAL_I1670 Aliivibrio salmonicida LFI1238 transposase YP_002263095.1 1765750 D 316275 CDS YP_002263096.1 209695167 6987288 1766058..1766405 1 NC_011312.1 transposase 1766405 6987288 VSAL_I1671 Aliivibrio salmonicida LFI1238 transposase YP_002263096.1 1766058 D 316275 CDS YP_002263097.1 209695168 6987289 1766477..1767964 1 NC_011312.1 transposase 1767964 6987289 VSAL_I1672 Aliivibrio salmonicida LFI1238 transposase YP_002263097.1 1766477 D 316275 CDS YP_002263098.1 209695169 6987290 complement(1768022..1768630) 1 NC_011312.1 DNA repair protein 1768630 6987290 VSAL_I1673 Aliivibrio salmonicida LFI1238 DNA repair protein YP_002263098.1 1768022 R 316275 CDS YP_002263099.1 209695170 6987291 1768823..1769839 1 NC_011312.1 hypothetical protein 1769839 6987291 VSAL_I1674 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263099.1 1768823 D 316275 CDS YP_002263100.1 209695171 6987292 1769971..1770141 1 NC_011312.1 hypothetical protein 1770141 6987292 VSAL_I1675 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263100.1 1769971 D 316275 CDS YP_002263101.1 209695172 6987293 complement(1770234..1770923) 1 NC_011312.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 1770923 aqpZ 6987293 aqpZ Aliivibrio salmonicida LFI1238 aquaporin Z YP_002263101.1 1770234 R 316275 CDS YP_002263102.1 209695173 6988244 1771566..1772036 1 NC_011312.1 hypothetical protein 1772036 6988244 VSAL_I1677 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263102.1 1771566 D 316275 CDS YP_002263103.1 209695174 6987294 1772086..1773774 1 NC_011312.1 hypothetical protein 1773774 6987294 VSAL_I1678 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263103.1 1772086 D 316275 CDS YP_002263104.1 209695175 6987296 1775608..1777032 1 NC_011312.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1777032 sbcB 6987296 sbcB Aliivibrio salmonicida LFI1238 exonuclease I YP_002263104.1 1775608 D 316275 CDS YP_002263105.1 209695176 6989221 1777055..1777387 1 NC_011312.1 Similar to Escherichia coli membrane protein YohJ UniProt:P60632 (132 aa) fasta scores: E()=3e-11, 44.211% id in 95 aa; hypothetical protein 1777387 6989221 VSAL_I1681 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263105.1 1777055 D 316275 CDS YP_002263106.1 209695177 6987298 1777695..1778774 1 NC_011312.1 transposase 1778774 6987298 VSAL_I1683 Aliivibrio salmonicida LFI1238 transposase YP_002263106.1 1777695 D 316275 CDS YP_002263107.1 209695178 6987299 1779190..1780098 1 NC_011312.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1780098 cdd 6987299 cdd Aliivibrio salmonicida LFI1238 cytidine deaminase YP_002263107.1 1779190 D 316275 CDS YP_002263108.1 209695179 6988313 complement(1780153..1781319) 1 NC_011312.1 amidase 1781319 6988313 VSAL_I1685 Aliivibrio salmonicida LFI1238 amidase YP_002263108.1 1780153 R 316275 CDS YP_002263109.1 209695180 6987300 1781538..1782713 1 NC_011312.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1782713 purT 6987300 purT Aliivibrio salmonicida LFI1238 phosphoribosylglycinamide formyltransferase 2 YP_002263109.1 1781538 D 316275 CDS YP_002263110.1 209695181 6989045 1782903..1784102 1 NC_011312.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1784102 aspC 6989045 aspC Aliivibrio salmonicida LFI1238 aromatic amino acid aminotransferase YP_002263110.1 1782903 D 316275 CDS YP_002263111.1 209695182 6988273 complement(1784225..1785415) 1 NC_011312.1 hypothetical protein 1785415 6988273 VSAL_I1688 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263111.1 1784225 R 316275 CDS YP_002263112.1 209695183 6987301 complement(1785450..1786424) 1 NC_011312.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1786424 cysB 6987301 cysB Aliivibrio salmonicida LFI1238 transcriptional regulator CysB YP_002263112.1 1785450 R 316275 CDS YP_002263113.1 209695184 6988371 1786702..1787466 1 NC_011312.1 hypothetical protein 1787466 6988371 VSAL_I1690 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263113.1 1786702 D 316275 CDS YP_002263114.1 209695185 6988804 complement(1787903..1788784) 1 NC_011312.1 transposase 1788784 6988804 VSAL_I1692 Aliivibrio salmonicida LFI1238 transposase YP_002263114.1 1787903 R 316275 CDS YP_002263115.1 209695186 6987303 1789542..1789946 1 NC_011312.1 hypothetical protein 1789946 6987303 VSAL_I1693 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263115.1 1789542 D 316275 CDS YP_002263116.1 209695187 6987304 complement(1789950..1790333) 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 1790333 6987304 VSAL_I1694 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263116.1 1789950 R 316275 CDS YP_002263117.1 209695188 6987305 complement(1790585..1792273) 1 NC_011312.1 hypothetical protein 1792273 6987305 VSAL_I1695 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263117.1 1790585 R 316275 CDS YP_002263118.1 209695189 6987306 complement(1792347..1792634) 1 NC_011312.1 glutaredoxin-3 (grx3) 1792634 6987306 VSAL_I1696 Aliivibrio salmonicida LFI1238 glutaredoxin-3 (grx3) YP_002263118.1 1792347 R 316275 CDS YP_002263119.1 209695190 6987307 complement(1792702..1793448) 1 NC_011312.1 hypothetical protein 1793448 6987307 VSAL_I1697 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263119.1 1792702 R 316275 CDS YP_002263120.1 209695191 6987308 1793641..1794744 1 NC_011312.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1794744 6987308 VSAL_I1698 Aliivibrio salmonicida LFI1238 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_002263120.1 1793641 D 316275 CDS YP_002263121.1 209695192 6987309 complement(1794854..1795387) 1 NC_011312.1 Possible alternative translational start site after codon 20; outer membrane protein, OmpA-like 1795387 6987309 VSAL_I1699 Aliivibrio salmonicida LFI1238 outer membrane protein, OmpA-like YP_002263121.1 1794854 R 316275 CDS YP_002263122.1 209695193 6987310 complement(1795434..1799330) 1 NC_011312.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 1799330 hrpA 6987310 hrpA Aliivibrio salmonicida LFI1238 ATP-dependent RNA helicase HrpA YP_002263122.1 1795434 R 316275 CDS YP_002263123.1 209695194 6988680 1799568..1800635 1 NC_011312.1 Similar to Vibrio cholerae outer membrane porin OmpA UniProt:O31154 (321 aa) fasta scores: E()=3e-19, 33.225% id in 307 aa; outer membrane protein, OmpA family 1800635 6988680 VSAL_I1701 Aliivibrio salmonicida LFI1238 outer membrane protein, OmpA family YP_002263123.1 1799568 D 316275 CDS YP_002263124.1 209695195 6987312 complement(1802253..1803134) 1 NC_011312.1 transposase 1803134 6987312 VSAL_I1703 Aliivibrio salmonicida LFI1238 transposase YP_002263124.1 1802253 R 316275 CDS YP_002263125.1 209695196 6987314 1804059..1804385 1 NC_011312.1 hypothetical protein 1804385 6987314 VSAL_I1705 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263125.1 1804059 D 316275 CDS YP_002263126.1 209695197 6987315 complement(1804404..1804676) 1 NC_011312.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1804676 6987315 VSAL_I1706 Aliivibrio salmonicida LFI1238 acylphosphatase YP_002263126.1 1804404 R 316275 CDS YP_002263127.1 209695198 6987317 1805105..1806295 1 NC_011312.1 transposase 1806295 6987317 VSAL_I1708 Aliivibrio salmonicida LFI1238 transposase YP_002263127.1 1805105 D 316275 CDS YP_002263128.1 209695199 6987318 1806799..1807989 1 NC_011312.1 hypothetical protein 1807989 6987318 VSAL_I1709 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263128.1 1806799 D 316275 CDS YP_002263129.1 209695200 6987320 1821513..1821863 1 NC_011312.1 hypothetical protein 1821863 6987320 VSAL_I1711 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263129.1 1821513 D 316275 CDS YP_002263130.1 209695201 6987321 complement(1821978..1823036) 1 NC_011312.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 1823036 glpQ 6987321 glpQ Aliivibrio salmonicida LFI1238 glycerophosphodiester phosphodiesterase YP_002263130.1 1821978 R 316275 CDS YP_002263131.1 209695202 6988601 complement(1823160..1824611) 1 NC_011312.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 1824611 glpT 6988601 glpT Aliivibrio salmonicida LFI1238 sn-glycerol-3-phosphate transporter YP_002263131.1 1823160 R 316275 CDS YP_002263132.1 209695203 6988602 1824758..1825072 1 NC_011312.1 transposase 1825072 6988602 VSAL_I1714 Aliivibrio salmonicida LFI1238 transposase YP_002263132.1 1824758 D 316275 CDS YP_002263133.1 209695204 6987322 1825069..1825416 1 NC_011312.1 transposase 1825416 6987322 VSAL_I1715 Aliivibrio salmonicida LFI1238 transposase YP_002263133.1 1825069 D 316275 CDS YP_002263134.1 209695205 6987325 complement(1827460..1828080) 1 NC_011312.1 hypothetical protein 1828080 6987325 VSAL_I1718 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263134.1 1827460 R 316275 CDS YP_002263135.1 209695206 6987327 1829028..1830104 1 NC_011312.1 transposase 1830104 6987327 VSAL_I1720 Aliivibrio salmonicida LFI1238 transposase YP_002263135.1 1829028 D 316275 CDS YP_002263136.1 209695207 6987328 complement(1830387..1831628) 1 NC_011312.1 phage integrase 1831628 int 6987328 int Aliivibrio salmonicida LFI1238 phage integrase YP_002263136.1 1830387 R 316275 CDS YP_002263137.1 209695208 6987329 complement(1832987..1833943) 1 NC_011312.1 transposase 1833943 6987329 VSAL_I1723 Aliivibrio salmonicida LFI1238 transposase YP_002263137.1 1832987 R 316275 CDS YP_002263138.1 209695209 6987330 complement(1834851..1835756) 1 NC_011312.1 hypothetical protein 1835756 6987330 VSAL_I1724 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263138.1 1834851 R 316275 CDS YP_002263139.1 209695210 6987331 1835774..1837129 1 NC_011312.1 hypothetical protein 1837129 6987331 VSAL_I1725 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263139.1 1835774 D 316275 CDS YP_002263140.1 209695211 6987332 complement(1837282..1838166) 1 NC_011312.1 Similar to Escherichia coli Phosphoenolpyruvate synthase PpsA UniProt:P23538 (791 aa) fasta scores: E()=3.5e-21, 33.898% id in 236 aa; PEP-utilizing enzyme 1838166 6987332 VSAL_I1726 Aliivibrio salmonicida LFI1238 PEP-utilizing enzyme YP_002263140.1 1837282 R 316275 CDS YP_002263141.1 209695212 6987333 1838388..1839440 1 NC_011312.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1839440 aroH 6987333 aroH Aliivibrio salmonicida LFI1238 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002263141.1 1838388 D 316275 CDS YP_002263142.1 209695213 6988263 1839456..1839938 1 NC_011312.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 1839938 6988263 VSAL_I1728 Aliivibrio salmonicida LFI1238 nucleotide-binding protein YP_002263142.1 1839456 D 316275 CDS YP_002263143.1 209695214 6987334 complement(1840008..1841789) 1 NC_011312.1 oligopeptidase F 1841789 6987334 VSAL_I1729 Aliivibrio salmonicida LFI1238 oligopeptidase F YP_002263143.1 1840008 R 316275 CDS YP_002263144.1 209695215 6987335 complement(1841899..1842912) 1 NC_011312.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1842912 6987335 VSAL_I1730 Aliivibrio salmonicida LFI1238 succinylglutamate desuccinylase YP_002263144.1 1841899 R 316275 CDS YP_002263145.1 209695216 6987336 complement(1843115..1843411) 1 NC_011312.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1843411 ihfA 6987336 ihfA Aliivibrio salmonicida LFI1238 integration host factor subunit alpha YP_002263145.1 1843115 R 316275 CDS YP_002263146.1 209695217 6988702 complement(1843935..1846322) 1 NC_011312.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1846322 pheT 6988702 pheT Aliivibrio salmonicida LFI1238 phenylalanyl-tRNA synthetase subunit beta YP_002263146.1 1843935 R 316275 CDS YP_002263147.1 209695218 6988971 complement(1846340..1847323) 1 NC_011312.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1847323 pheS 6988971 pheS Aliivibrio salmonicida LFI1238 phenylalanyl-tRNA synthetase subunit alpha YP_002263147.1 1846340 R 316275 CDS YP_002263148.1 209695219 6987338 1850439..1850861 1 NC_011312.1 transposase 1850861 6987338 VSAL_I1736 Aliivibrio salmonicida LFI1238 transposase YP_002263148.1 1850439 D 316275 CDS YP_002263149.1 209695220 6987339 1850879..1851445 1 NC_011312.1 transposase 1851445 6987339 VSAL_I1737 Aliivibrio salmonicida LFI1238 transposase YP_002263149.1 1850879 D 316275 CDS YP_002263150.1 209695221 6987341 complement(1852072..1852803) 1 NC_011312.1 hypothetical protein 1852803 6987341 VSAL_I1739 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263150.1 1852072 R 316275 CDS YP_002263151.1 209695222 6987342 complement(1852833..1853519) 1 NC_011312.1 hypothetical protein 1853519 6987342 VSAL_I1740 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263151.1 1852833 R 316275 CDS YP_002263152.1 209695223 6987343 complement(1853551..1854279) 1 NC_011312.1 membrane protein 1854279 6987343 VSAL_I1741 Aliivibrio salmonicida LFI1238 membrane protein YP_002263152.1 1853551 R 316275 CDS YP_002263153.1 209695224 6987345 complement(1857562..1858416) 1 NC_011312.1 hypothetical protein 1858416 6987345 VSAL_I1743 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263153.1 1857562 R 316275 CDS YP_002263154.1 209695225 6987346 1860051..1860365 1 NC_011312.1 transposase 1860365 6987346 VSAL_I1745 Aliivibrio salmonicida LFI1238 transposase YP_002263154.1 1860051 D 316275 CDS YP_002263155.1 209695226 6987347 1860362..1860709 1 NC_011312.1 transposase 1860709 6987347 VSAL_I1746 Aliivibrio salmonicida LFI1238 transposase YP_002263155.1 1860362 D 316275 CDS YP_002263156.1 209695227 6987348 1860781..1862268 1 NC_011312.1 transposase 1862268 6987348 VSAL_I1747 Aliivibrio salmonicida LFI1238 transposase YP_002263156.1 1860781 D 316275 CDS YP_002263157.1 209695228 6987349 complement(1863104..1863634) 1 NC_011312.1 heme uptake and utilization protein HuvZ 1863634 huvZ 6987349 huvZ Aliivibrio salmonicida LFI1238 heme uptake and utilization protein HuvZ YP_002263157.1 1863104 R 316275 CDS YP_002263158.1 209695229 6988696 complement(1863660..1864166) 1 NC_011312.1 heme uptake and utilization protein HuvX 1864166 huvX 6988696 huvX Aliivibrio salmonicida LFI1238 heme uptake and utilization protein HuvX YP_002263158.1 1863660 R 316275 CDS YP_002263159.1 209695230 6988695 complement(1864187..1865509) 1 NC_011312.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1865509 phuW 6988695 phuW Aliivibrio salmonicida LFI1238 coproporphyrinogen III oxidase YP_002263159.1 1864187 R 316275 CDS YP_002263160.1 209695231 6989308 1866457..1867137 1 NC_011312.1 TonB system transport protein ExbB1 1867137 exbB1 6989308 exbB1 Aliivibrio salmonicida LFI1238 TonB system transport protein ExbB1 YP_002263160.1 1866457 D 316275 CDS YP_002263161.1 209695232 6988457 1867137..1867562 1 NC_011312.1 TonB system transport protein ExbD1 1867562 exbD1 6988457 exbD1 Aliivibrio salmonicida LFI1238 TonB system transport protein ExbD1 YP_002263161.1 1867137 D 316275 CDS YP_002263162.1 209695233 6988458 1867552..1868424 1 NC_011312.1 heme transporter protein HuvB, periplasmic binding protein 1868424 huvB 6988458 huvB Aliivibrio salmonicida LFI1238 heme transporter protein HuvB, periplasmic binding protein YP_002263162.1 1867552 D 316275 CDS YP_002263163.1 209695234 6988693 1868428..1869465 1 NC_011312.1 heme transporter protein HuvC, transmembrane permease component 1869465 huvC 6988693 huvC Aliivibrio salmonicida LFI1238 heme transporter protein HuvC, transmembrane permease component YP_002263163.1 1868428 D 316275 CDS YP_002263164.1 209695235 6988694 1869462..1870244 1 NC_011312.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 1870244 hmuV 6988694 hmuV Aliivibrio salmonicida LFI1238 hemin importer ATP-binding subunit YP_002263164.1 1869462 D 316275 CDS YP_002263165.1 209695236 6988692 complement(1870335..1870688) 1 NC_011312.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1870688 rplT 6988692 rplT Aliivibrio salmonicida LFI1238 50S ribosomal protein L20 YP_002263165.1 1870335 R 316275 CDS YP_002263166.1 209695237 6989163 complement(1870730..1870924) 1 NC_011312.1 50S ribosomal protein L35 1870924 rpmI 6989163 rpmI Aliivibrio salmonicida LFI1238 50S ribosomal protein L35 YP_002263166.1 1870730 R 316275 CDS YP_002263167.1 209695238 6989178 complement(1871032..1871583) 1 NC_011312.1 CDS contanins a rare Isoleucine start codon (ATT); translation initiation factor IF-3 1871583 infC 6989178 infC Aliivibrio salmonicida LFI1238 translation initiation factor IF-3 YP_002263167.1 1871032 R 316275 CDS YP_002263168.1 209695239 6988717 complement(1871587..1873515) 1 NC_011312.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1873515 thrS 6988717 thrS Aliivibrio salmonicida LFI1238 threonyl-tRNA synthetase YP_002263168.1 1871587 R 316275 CDS YP_002263169.1 209695240 6989295 complement(1873744..1874490) 1 NC_011312.1 Similar to Bacillus subtilis Spo0M UniProt:O87735 (258 aa) fasta scores: E()=5.5e-16, 38.117% id in 223 aa; sporulation-control protein 1874490 6989295 VSAL_I1761 Aliivibrio salmonicida LFI1238 sporulation-control protein YP_002263169.1 1873744 R 316275 CDS YP_002263170.1 209695241 6987350 complement(1874557..1875639) 1 NC_011312.1 peptidase 1875639 6987350 VSAL_I1762 Aliivibrio salmonicida LFI1238 peptidase YP_002263170.1 1874557 R 316275 CDS YP_002263171.1 209695242 6987351 complement(1875664..1875981) 1 NC_011312.1 hypothetical protein 1875981 6987351 VSAL_I1763 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263171.1 1875664 R 316275 CDS YP_002263172.1 209695243 6987352 complement(1876072..1877424) 1 NC_011312.1 Similar to Escherichia coli YegD UniProt:P36928 (450 aa) fasta scores: E()=9.3e-90, 55.679% id in 449 aa; chaperone 1877424 6987352 VSAL_I1764 Aliivibrio salmonicida LFI1238 chaperone YP_002263172.1 1876072 R 316275 CDS YP_002263173.1 209695244 6987353 complement(1877488..1878051) 1 NC_011312.1 membrane-associated phosphoesterase 1878051 6987353 VSAL_I1765 Aliivibrio salmonicida LFI1238 membrane-associated phosphoesterase YP_002263173.1 1877488 R 316275 CDS YP_002263174.1 209695245 6987354 1878265..1878972 1 NC_011312.1 hypothetical protein 1878972 6987354 VSAL_I1766 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263174.1 1878265 D 316275 CDS YP_002263175.1 209695246 6987355 complement(1879456..1882113) 1 NC_011312.1 DNA gyrase subunit A 1882113 gyrA 6987355 gyrA Aliivibrio salmonicida LFI1238 DNA gyrase subunit A YP_002263175.1 1879456 R 316275 CDS YP_002263176.1 209695247 6988636 1882401..1883126 1 NC_011312.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1883126 ubiG 6988636 ubiG Aliivibrio salmonicida LFI1238 3-demethylubiquinone-9 3-methyltransferase YP_002263176.1 1882401 D 316275 CDS YP_002263177.1 209695248 6989353 1883610..1885886 1 NC_011312.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1885886 nrdA 6989353 nrdA Aliivibrio salmonicida LFI1238 ribonucleotide-diphosphate reductase subunit alpha YP_002263177.1 1883610 D 316275 CDS YP_002263178.1 209695249 6988913 1886055..1887188 1 NC_011312.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 1887188 nrdB 6988913 nrdB Aliivibrio salmonicida LFI1238 ribonucleotide-diphosphate reductase subunit beta YP_002263178.1 1886055 D 316275 CDS YP_002263179.1 209695250 6987356 1889511..1889786 1 NC_011312.1 ferredoxin 1889786 6987356 VSAL_I1772 Aliivibrio salmonicida LFI1238 ferredoxin YP_002263179.1 1889511 D 316275 CDS YP_002263180.1 209695251 6987357 complement(1889844..1891076) 1 NC_011312.1 molybdopterin binding protein 1891076 6987357 VSAL_I1773 Aliivibrio salmonicida LFI1238 molybdopterin binding protein YP_002263180.1 1889844 R 316275 CDS YP_002263181.1 209695252 6987358 1891303..1892475 1 NC_011312.1 tyrosine-specific transporter 1892475 tyrP 6987358 tyrP Aliivibrio salmonicida LFI1238 tyrosine-specific transporter YP_002263181.1 1891303 D 316275 CDS YP_002263182.1 209695253 6989345 1892637..1893551 1 NC_011312.1 hypothetical protein 1893551 6989345 VSAL_I1775 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263182.1 1892637 D 316275 CDS YP_002263183.1 209695254 6987359 complement(1893600..1894925) 1 NC_011312.1 transposase 1894925 6987359 VSAL_I1776 Aliivibrio salmonicida LFI1238 transposase YP_002263183.1 1893600 R 316275 CDS YP_002263184.1 209695255 6987360 complement(1895311..1896192) 1 NC_011312.1 transposase 1896192 6987360 VSAL_I1777 Aliivibrio salmonicida LFI1238 transposase YP_002263184.1 1895311 R 316275 CDS YP_002263185.1 209695256 6987362 1896603..1896950 1 NC_011312.1 transposase 1896950 6987362 VSAL_I1779 Aliivibrio salmonicida LFI1238 transposase YP_002263185.1 1896603 D 316275 CDS YP_002263186.1 209695257 6987363 1897021..1898508 1 NC_011312.1 transposase 1898508 6987363 VSAL_I1780 Aliivibrio salmonicida LFI1238 transposase YP_002263186.1 1897021 D 316275 CDS YP_002263187.1 209695258 6987364 complement(1898601..1898987) 1 NC_011312.1 hypothetical protein 1898987 6987364 VSAL_I1781 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263187.1 1898601 R 316275 CDS YP_002263188.1 209695259 6987365 complement(1899190..1899843) 1 NC_011312.1 Metallo-beta-lactamase 1899843 6987365 VSAL_I1782 Aliivibrio salmonicida LFI1238 Metallo-beta-lactamase YP_002263188.1 1899190 R 316275 CDS YP_002263189.1 209695260 6987366 complement(1899903..1901024) 1 NC_011312.1 lipoprotein 1901024 6987366 VSAL_I1783 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263189.1 1899903 R 316275 CDS YP_002263190.1 209695261 6987367 complement(1901005..1902024) 1 NC_011312.1 lipoprotein 1902024 6987367 VSAL_I1784 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263190.1 1901005 R 316275 CDS YP_002263191.1 209695262 6987368 complement(1902035..1903423) 1 NC_011312.1 hypothetical protein 1903423 6987368 VSAL_I1785 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263191.1 1902035 R 316275 CDS YP_002263192.1 209695263 6987369 complement(1903553..1904806) 1 NC_011312.1 Expression may be regulated by Fur; iron-regulated protein 1904806 6987369 VSAL_I1786 Aliivibrio salmonicida LFI1238 iron-regulated protein YP_002263192.1 1903553 R 316275 CDS YP_002263193.1 209695264 6987370 complement(1905014..1905613) 1 NC_011312.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1905613 ribA 6987370 ribA Aliivibrio salmonicida LFI1238 GTP cyclohydrolase II YP_002263193.1 1905014 R 316275 CDS YP_002263194.1 209695265 6989095 complement(1905921..1907066) 1 NC_011312.1 alcohol dehydrogenase 2 1907066 adhB 6989095 adhB Aliivibrio salmonicida LFI1238 alcohol dehydrogenase 2 YP_002263194.1 1905921 R 316275 CDS YP_002263195.1 209695266 6988222 complement(1907270..1907986) 1 NC_011312.1 hypothetical protein 1907986 6988222 VSAL_I1789 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263195.1 1907270 R 316275 CDS YP_002263196.1 209695267 6987371 complement(1907988..1911206) 1 NC_011312.1 Similar to Pasteurella haemolytica (mannheimia haemolytica) HsdR UniProt:P95512 (1055 aa) fasta scores: E()=2.8e-27, 27.793% id in 1083 aa; restriction enzyme 1911206 6987371 VSAL_I1790 Aliivibrio salmonicida LFI1238 restriction enzyme YP_002263196.1 1907988 R 316275 CDS YP_002263197.1 209695268 6987373 complement(1912607..1914370) 1 NC_011312.1 Similar to Salmonella enterica HsdM UniProt:P72418 (539 aa) fasta scores: E()=2.4e-42, 33.469% id in 493 aa; N-6 adenine-specific DNA methylase 1914370 6987373 VSAL_I1792 Aliivibrio salmonicida LFI1238 N-6 adenine-specific DNA methylase YP_002263197.1 1912607 R 316275 CDS YP_002263198.1 209695269 6987374 1914702..1915766 1 NC_011312.1 hypothetical protein 1915766 6987374 VSAL_I1793 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263198.1 1914702 D 316275 CDS YP_002263199.1 209695270 6987376 complement(1916221..1916967) 1 NC_011312.1 hypothetical protein 1916967 6987376 VSAL_I1795 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263199.1 1916221 R 316275 CDS YP_002263200.1 209695271 6988149 1917737..1919119 1 NC_011312.1 sodium/alanine symporter 1919119 6988149 VSAL_I1796 Aliivibrio salmonicida LFI1238 sodium/alanine symporter YP_002263200.1 1917737 D 316275 CDS YP_002263201.1 209695272 6987378 1919516..1921201 1 NC_011312.1 Similar to Escherichia coli small-conductance mechanosensitive channel MscS UniProt:P0C0S1 (286 aa) fasta scores: E()=1.6e-27, 34.643% id in 280 aa; mechanosensitive ion channel 1921201 6987378 VSAL_I1797 Aliivibrio salmonicida LFI1238 mechanosensitive ion channel YP_002263201.1 1919516 D 316275 CDS YP_002263202.1 209695273 6987379 complement(1921280..1921921) 1 NC_011312.1 amino acid transport protein, LysE type 1921921 6987379 VSAL_I1798 Aliivibrio salmonicida LFI1238 amino acid transport protein, LysE type YP_002263202.1 1921280 R 316275 CDS YP_002263203.1 209695274 6987380 1922143..1922274 1 NC_011312.1 hypothetical protein 1922274 6987380 VSAL_I1799 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263203.1 1922143 D 316275 CDS YP_002263204.1 209695275 6987381 1922402..1923886 1 NC_011312.1 Similar to Thermus aquaticus thermostable carboxypeptidase 1 UniProt:P42663 (511 aa) fasta scores: E()=2.4e-53, 36.853% id in 502 aa; carboxypeptidase 1923886 6987381 VSAL_I1800 Aliivibrio salmonicida LFI1238 carboxypeptidase YP_002263204.1 1922402 D 316275 CDS YP_002263205.1 209695276 6987382 1924100..1924351 1 NC_011312.1 DNA-binding transcriptional regulator HipB 1924351 hipB 6987382 hipB Aliivibrio salmonicida LFI1238 DNA-binding transcriptional regulator HipB YP_002263205.1 1924100 D 316275 CDS YP_002263206.1 209695277 6988659 1924351..1925673 1 NC_011312.1 HipA family transcriptional regulator 1925673 hipA 6988659 hipA Aliivibrio salmonicida LFI1238 HipA family transcriptional regulator YP_002263206.1 1924351 D 316275 CDS YP_002263207.1 209695278 6988658 complement(1925836..1927200) 1 NC_011312.1 hypothetical protein 1927200 6988658 VSAL_I1803 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263207.1 1925836 R 316275 CDS YP_002263208.1 209695279 6987383 complement(1927204..1928316) 1 NC_011312.1 hypothetical protein 1928316 6987383 VSAL_I1804 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263208.1 1927204 R 316275 CDS YP_002263209.1 209695280 6987384 complement(1928432..1928653) 1 NC_011312.1 hypothetical protein 1928653 6987384 VSAL_I1805 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263209.1 1928432 R 316275 CDS YP_002263210.1 209695281 6987385 complement(1928797..1930368) 1 NC_011312.1 hypothetical protein 1930368 6987385 VSAL_I1806 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263210.1 1928797 R 316275 CDS YP_002263211.1 209695282 6987386 1930948..1931625 1 NC_011312.1 hypothetical protein 1931625 6987386 VSAL_I1807 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263211.1 1930948 D 316275 CDS YP_002263212.1 209695283 6987387 1931745..1932872 1 NC_011312.1 hypothetical protein 1932872 6987387 VSAL_I1808 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263212.1 1931745 D 316275 CDS YP_002263213.1 209695284 6987388 1932956..1933270 1 NC_011312.1 transposase 1933270 6987388 VSAL_I1809 Aliivibrio salmonicida LFI1238 transposase YP_002263213.1 1932956 D 316275 CDS YP_002263214.1 209695285 6987389 1933267..1933614 1 NC_011312.1 transposase 1933614 6987389 VSAL_I1810 Aliivibrio salmonicida LFI1238 transposase YP_002263214.1 1933267 D 316275 CDS YP_002263215.1 209695286 6987392 complement(1935733..1937103) 1 NC_011312.1 Similar to Escherichia coli Hypothetical symporter YdjN UniProt:P77529 (463 aa) fasta scores: E()=2.2e-84,59.161% id in 453 aa; sodium/dicarboxylate symporter 1937103 6987392 VSAL_I1813 Aliivibrio salmonicida LFI1238 sodium/dicarboxylate symporter YP_002263215.1 1935733 R 316275 CDS YP_002263216.1 209695287 6987393 1937360..1938001 1 NC_011312.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1938001 6987393 VSAL_I1814 Aliivibrio salmonicida LFI1238 thiopurine S-methyltransferase YP_002263216.1 1937360 D 316275 CDS YP_002263217.1 209695288 6987394 complement(1938151..1938876) 1 NC_011312.1 Similar to Streptococcus pneumoniae CTP:phosphocholine Cytidylytransferase (PDB 1JYK),evalue=3e-18; nucleotidyl transferase 1938876 6987394 VSAL_I1815 Aliivibrio salmonicida LFI1238 nucleotidyl transferase YP_002263217.1 1938151 R 316275 CDS YP_002263218.1 209695289 6987395 complement(1938973..1939746) 1 NC_011312.1 membrane protein 1939746 6987395 VSAL_I1816 Aliivibrio salmonicida LFI1238 membrane protein YP_002263218.1 1938973 R 316275 CDS YP_002263219.1 209695290 6987396 complement(1939747..1940967) 1 NC_011312.1 Similar to Salmonella typhimurium 2-aminoethylphosphonate-pyruvate aminotransferase (PDB 1M32), evalue=5e-33, identity=(110, 360); aminotransferase 1940967 6987396 VSAL_I1817 Aliivibrio salmonicida LFI1238 aminotransferase YP_002263219.1 1939747 R 316275 CDS YP_002263220.1 209695291 6987398 1943870..1944973 1 NC_011312.1 Similar to Enterobacter sakazakii OmpA UniProt:Q52JK5 (347 aa) fasta scores: E()=3.7e-32, 32.286% id in 350 aa; outer membrane protein A 1944973 6987398 VSAL_I1819 Aliivibrio salmonicida LFI1238 outer membrane protein A YP_002263220.1 1943870 D 316275 CDS YP_002263221.1 209695292 6987399 1944970..1947069 1 NC_011312.1 lipoprotein 1947069 6987399 VSAL_I1820 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263221.1 1944970 D 316275 CDS YP_002263222.1 209695293 6987402 complement(1949064..1949618) 1 NC_011312.1 Possible alternative translational start site after codon 8; exonuclease 1949618 6987402 VSAL_I1823 Aliivibrio salmonicida LFI1238 exonuclease YP_002263222.1 1949064 R 316275 CDS YP_002263223.1 209695294 6987403 complement(1949687..1951135) 1 NC_011312.1 membrane associated receptor 1951135 6987403 VSAL_I1824 Aliivibrio salmonicida LFI1238 membrane associated receptor YP_002263223.1 1949687 R 316275 CDS YP_002263224.1 209695295 6987404 1951455..1952087 1 NC_011312.1 hypothetical protein 1952087 6987404 VSAL_I1825 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263224.1 1951455 D 316275 CDS YP_002263225.1 209695296 6987405 1952087..1953907 1 NC_011312.1 Similar to Escherichia coli Chaperone protein DnaK UniProt:P0A6Y8 (637 aa) fasta scores: E()=6.8e-06, 23.077% id in 429 aa; heat-shock chaperone protein 1953907 6987405 VSAL_I1826 Aliivibrio salmonicida LFI1238 heat-shock chaperone protein YP_002263225.1 1952087 D 316275 CDS YP_002263226.1 209695297 6987406 1954046..1956862 1 NC_011312.1 Similar to Methylovorus sp. Chaperone protein DnaK UniProt:Q9ZFC6 (641 aa) fasta scores: E()=1.7e-06, 25.056% id in 443 aa; chaperone heat-shock protein 1956862 6987406 VSAL_I1827 Aliivibrio salmonicida LFI1238 chaperone heat-shock protein YP_002263226.1 1954046 D 316275 CDS YP_002263227.1 209695298 6987407 1956982..1957284 1 NC_011312.1 hypothetical protein 1957284 6987407 VSAL_I1828 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263227.1 1956982 D 316275 CDS YP_002263228.1 209695299 6987408 complement(1957348..1957821) 1 NC_011312.1 hypothetical protein 1957821 6987408 VSAL_I1829 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263228.1 1957348 R 316275 CDS YP_002263229.1 209695300 6987409 1958017..1959168 1 NC_011312.1 hypothetical protein 1959168 6987409 VSAL_I1830 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263229.1 1958017 D 316275 CDS YP_002263230.1 209695301 6987410 complement(1959321..1960079) 1 NC_011312.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 1960079 udp 6987410 udp Aliivibrio salmonicida LFI1238 uridine phosphorylase YP_002263230.1 1959321 R 316275 CDS YP_002263231.1 209695302 6987412 complement(1966663..1967010) 1 NC_011312.1 transposase 1967010 6987412 VSAL_I1834 Aliivibrio salmonicida LFI1238 transposase YP_002263231.1 1966663 R 316275 CDS YP_002263232.1 209695303 6987414 complement(1967437..1969158) 1 NC_011312.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 1969158 cydC 6987414 cydC Aliivibrio salmonicida LFI1238 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_002263232.1 1967437 R 316275 CDS YP_002263233.1 209695304 6988369 complement(1969151..1970923) 1 NC_011312.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 1970923 cydD 6988369 cydD Aliivibrio salmonicida LFI1238 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_002263233.1 1969151 R 316275 CDS YP_002263234.1 209695305 6988370 complement(1971073..1972038) 1 NC_011312.1 thioredoxin reductase 1972038 trxB 6988370 trxB Aliivibrio salmonicida LFI1238 thioredoxin reductase YP_002263234.1 1971073 R 316275 CDS YP_002263235.1 209695306 6989340 complement(1972198..1973316) 1 NC_011312.1 alanine dehydrogenase 1973316 aladh 6989340 aladh Aliivibrio salmonicida LFI1238 alanine dehydrogenase YP_002263235.1 1972198 R 316275 CDS YP_002263236.1 209695307 6988229 1973473..1973964 1 NC_011312.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1973964 lrp 6988229 lrp Aliivibrio salmonicida LFI1238 leucine-responsive transcriptional regulator YP_002263236.1 1973473 D 316275 CDS YP_002263237.1 209695308 6988762 1974174..1977449 1 NC_011312.1 DNA translocase FtsK 1977449 6988762 VSAL_I1841 Aliivibrio salmonicida LFI1238 DNA translocase FtsK YP_002263237.1 1974174 D 316275 CDS YP_002263238.1 209695309 6987415 1977479..1978075 1 NC_011312.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1978075 lolA 6987415 lolA Aliivibrio salmonicida LFI1238 outer-membrane lipoprotein carrier protein YP_002263238.1 1977479 D 316275 CDS YP_002263239.1 209695310 6987416 1978120..1979466 1 NC_011312.1 recombination factor protein RarA 1979466 6987416 VSAL_I1843 Aliivibrio salmonicida LFI1238 recombination factor protein RarA YP_002263239.1 1978120 D 316275 CDS YP_002263240.1 209695311 6987417 1979589..1980896 1 NC_011312.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1980896 serS 6987417 serS Aliivibrio salmonicida LFI1238 seryl-tRNA synthetase YP_002263240.1 1979589 D 316275 CDS YP_002263241.1 209695312 6989243 complement(1981008..1981442) 1 NC_011312.1 thioredoxin 2 1981442 trxC 6989243 trxC Aliivibrio salmonicida LFI1238 thioredoxin 2 YP_002263241.1 1981008 R 316275 CDS YP_002263242.1 209695313 6989341 complement(1981576..1981899) 1 NC_011312.1 highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 1981899 6989341 VSAL_I1846 Aliivibrio salmonicida LFI1238 dsDNA-mimic protein YP_002263242.1 1981576 R 316275 CDS YP_002263243.1 209695314 6987418 1982083..1983387 1 NC_011312.1 inosine-guanosine kinase 1983387 gsk 6987418 gsk Aliivibrio salmonicida LFI1238 inosine-guanosine kinase YP_002263243.1 1982083 D 316275 CDS YP_002263244.1 209695315 6988632 complement(1983456..1984331) 1 NC_011312.1 aldose 1-epimerase 1984331 6988632 VSAL_I1848 Aliivibrio salmonicida LFI1238 aldose 1-epimerase YP_002263244.1 1983456 R 316275 CDS YP_002263245.1 209695316 6987419 complement(1984513..1985505) 1 NC_011312.1 Expression may be regulated by Fur; glyceraldehydes-3-phosphate dehydrogenase 1985505 gap 6987419 gap Aliivibrio salmonicida LFI1238 glyceraldehydes-3-phosphate dehydrogenase YP_002263245.1 1984513 R 316275 CDS YP_002263246.1 209695317 6988583 1985842..1986246 1 NC_011312.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1986246 6988583 VSAL_I1850 Aliivibrio salmonicida LFI1238 methionine sulfoxide reductase B YP_002263246.1 1985842 D 316275 CDS YP_002263247.1 209695318 6987420 complement(1986310..1987194) 1 NC_011312.1 hypothetical protein 1987194 6987420 VSAL_I1851 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263247.1 1986310 R 316275 CDS YP_002263248.1 209695319 6987421 1987276..1987560 1 NC_011312.1 Expression may be stress-induced; hypothetical protein 1987560 6987421 VSAL_I1852 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263248.1 1987276 D 316275 CDS YP_002263249.1 209695320 6987422 1987705..1987854 1 NC_011312.1 hypothetical protein 1987854 6987422 VSAL_I1853 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263249.1 1987705 D 316275 CDS YP_002263250.1 209695321 6987423 complement(1987870..1988718) 1 NC_011312.1 ion transport protein 1988718 6987423 VSAL_I1854 Aliivibrio salmonicida LFI1238 ion transport protein YP_002263250.1 1987870 R 316275 CDS YP_002263251.1 209695322 6987424 1989295..1991946 1 NC_011312.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1991946 adhE 6987424 adhE Aliivibrio salmonicida LFI1238 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_002263251.1 1989295 D 316275 CDS YP_002263252.1 209695323 6988224 complement(1992080..1992751) 1 NC_011312.1 short chain dehydrogenase 1992751 6988224 VSAL_I1856 Aliivibrio salmonicida LFI1238 short chain dehydrogenase YP_002263252.1 1992080 R 316275 CDS YP_002263253.1 209695324 6987425 complement(1993015..1993521) 1 NC_011312.1 hypothetical protein 1993521 6987425 VSAL_I1857 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263253.1 1993015 R 316275 CDS YP_002263254.1 209695325 6987426 complement(1993731..1994315) 1 NC_011312.1 superoxide dismutase 1994315 sodB 6987426 sodB Aliivibrio salmonicida LFI1238 superoxide dismutase YP_002263254.1 1993731 R 316275 CDS YP_002263255.1 209695326 6989252 1994551..1994886 1 NC_011312.1 Similar to Escherichia coli YdhD UniProt:P0AC69 (115 aa) fasta scores: E()=1.3e-31, 72.321% id in 112 aa; glutaredoxin 1994886 6989252 VSAL_I1859 Aliivibrio salmonicida LFI1238 glutaredoxin YP_002263255.1 1994551 D 316275 CDS YP_002263256.1 209695327 6987427 complement(1994990..1996288) 1 NC_011312.1 Similar to Vibrio cholerae VieB UniProt:O68319 (553 aa) fasta scores: E()=5.3e-07, 23.249% id in 357 aa; response regulator 1996288 6987427 VSAL_I1860 Aliivibrio salmonicida LFI1238 response regulator YP_002263256.1 1994990 R 316275 CDS YP_002263257.1 209695328 6987428 complement(1996459..1997787) 1 NC_011312.1 sodium/proton antiporter 1997787 6987428 VSAL_I1861 Aliivibrio salmonicida LFI1238 sodium/proton antiporter YP_002263257.1 1996459 R 316275 CDS YP_002263258.1 209695329 6987429 complement(1997835..1998500) 1 NC_011312.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1998500 rnt 6987429 rnt Aliivibrio salmonicida LFI1238 ribonuclease T YP_002263258.1 1997835 R 316275 CDS YP_002263259.1 209695330 6989141 1998701..1999579 1 NC_011312.1 sodium-type flagellar protein MotY precursor 1999579 motY 6989141 motY Aliivibrio salmonicida LFI1238 sodium-type flagellar protein MotY precursor YP_002263259.1 1998701 D 316275 CDS YP_002263260.1 209695331 6988824 complement(1999618..2000052) 1 NC_011312.1 Expression may be regulated by Fur; outer membrane protein 2000052 6988824 VSAL_I1864 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002263260.1 1999618 R 316275 CDS YP_002263261.1 209695332 6987430 complement(2000172..2000588) 1 NC_011312.1 lactoylglutathione lyase 2000588 gloA 6987430 gloA Aliivibrio salmonicida LFI1238 lactoylglutathione lyase YP_002263261.1 2000172 R 316275 CDS YP_002263262.1 209695333 6988599 complement(2000625..2001260) 1 NC_011312.1 endonuclease III 2001260 nth 6988599 nth Aliivibrio salmonicida LFI1238 endonuclease III YP_002263262.1 2000625 R 316275 CDS YP_002263263.1 209695334 6988920 complement(2001278..2001964) 1 NC_011312.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2001964 rnfE 6988920 rnfE Aliivibrio salmonicida LFI1238 electron transport complex protein RsxE YP_002263263.1 2001278 R 316275 CDS YP_002263264.1 209695335 6989135 complement(2001964..2002596) 1 NC_011312.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2002596 rnfG 6989135 rnfG Aliivibrio salmonicida LFI1238 electron transport complex protein RnfG YP_002263264.1 2001964 R 316275 CDS YP_002263265.1 209695336 6989136 complement(2002600..2003655) 1 NC_011312.1 electron transport complex protein RnfD 2003655 rnfD 6989136 rnfD Aliivibrio salmonicida LFI1238 electron transport complex protein RnfD YP_002263265.1 2002600 R 316275 CDS YP_002263266.1 209695337 6989134 complement(2003658..2005808) 1 NC_011312.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2005808 rnfC 6989134 rnfC Aliivibrio salmonicida LFI1238 electron transport complex protein RnfC YP_002263266.1 2003658 R 316275 CDS YP_002263267.1 209695338 6989133 complement(2005812..2006396) 1 NC_011312.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2006396 rnfB 6989133 rnfB Aliivibrio salmonicida LFI1238 electron transport complex protein RnfB YP_002263267.1 2005812 R 316275 CDS YP_002263268.1 209695339 6989132 complement(2006399..2006980) 1 NC_011312.1 Na(+)-translocating NADH-quinone reductase subunit E 2006980 rnfA 6989132 rnfA Aliivibrio salmonicida LFI1238 Na(+)-translocating NADH-quinone reductase subunit E YP_002263268.1 2006399 R 316275 CDS YP_002263269.1 209695340 6988150 2007661..2009691 1 NC_011312.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2009691 uvrB 6988150 uvrB Aliivibrio salmonicida LFI1238 excinuclease ABC subunit B YP_002263269.1 2007661 D 316275 CDS YP_002263270.1 209695341 6989057 2010023..2011432 1 NC_011312.1 two component signal response regulator LuxO 2011432 luxO 6989057 luxO Aliivibrio salmonicida LFI1238 two component signal response regulator LuxO YP_002263270.1 2010023 D 316275 CDS YP_002263271.1 209695342 6988764 2011444..2011776 1 NC_011312.1 phosphorelay protein LuxU 2011776 luxU 6988764 luxU Aliivibrio salmonicida LFI1238 phosphorelay protein LuxU YP_002263271.1 2011444 D 316275 CDS YP_002263272.1 209695343 6988768 complement(2011826..2012704) 1 NC_011312.1 hypothetical protein 2012704 6988768 VSAL_I1876 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263272.1 2011826 R 316275 CDS YP_002263273.1 209695344 6987431 2013073..2014062 1 NC_011312.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 2014062 moaA 6987431 moaA Aliivibrio salmonicida LFI1238 molybdenum cofactor biosynthesis protein A YP_002263273.1 2013073 D 316275 CDS YP_002263274.1 209695345 6988813 2014075..2014554 1 NC_011312.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 2014554 moaC 6988813 moaC Aliivibrio salmonicida LFI1238 molybdenum cofactor biosynthesis protein MoaC YP_002263274.1 2014075 D 316275 CDS YP_002263275.1 209695346 6988814 2014551..2014796 1 NC_011312.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 2014796 moaD 6988814 moaD Aliivibrio salmonicida LFI1238 molybdopterin synthase small subunit YP_002263275.1 2014551 D 316275 CDS YP_002263276.1 209695347 6988815 2014798..2015244 1 NC_011312.1 molybdopterin-converting factor subunit 2 2015244 moaE 6988815 moaE Aliivibrio salmonicida LFI1238 molybdopterin-converting factor subunit 2 YP_002263276.1 2014798 D 316275 CDS YP_002263277.1 209695348 6988816 complement(2015333..2016298) 1 NC_011312.1 hypothetical protein 2016298 6988816 VSAL_I1881 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263277.1 2015333 R 316275 CDS YP_002263278.1 209695349 6987432 complement(2016302..2017810) 1 NC_011312.1 membrane protein 2017810 6987432 VSAL_I1882 Aliivibrio salmonicida LFI1238 membrane protein YP_002263278.1 2016302 R 316275 CDS YP_002263279.1 209695350 6987433 complement(2017913..2018683) 1 NC_011312.1 Expression may be stress-induced; lipoprotein 2018683 6987433 VSAL_I1883 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263279.1 2017913 R 316275 CDS YP_002263280.1 209695351 6987434 complement(2018763..2019737) 1 NC_011312.1 methyltransferase 2019737 6987434 VSAL_I1884 Aliivibrio salmonicida LFI1238 methyltransferase YP_002263280.1 2018763 R 316275 CDS YP_002263281.1 209695352 6987435 complement(2019787..2020515) 1 NC_011312.1 methyltransferase 2020515 6987435 VSAL_I1885 Aliivibrio salmonicida LFI1238 methyltransferase YP_002263281.1 2019787 R 316275 CDS YP_002263282.1 209695353 6987436 2021027..2022802 1 NC_011312.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2022802 aspS 6987436 aspS Aliivibrio salmonicida LFI1238 aspartyl-tRNA synthetase YP_002263282.1 2021027 D 316275 CDS YP_002263283.1 209695354 6988274 2022901..2023422 1 NC_011312.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2023422 ruvC 6988274 ruvC Aliivibrio salmonicida LFI1238 Holliday junction resolvase YP_002263283.1 2022901 D 316275 CDS YP_002263284.1 209695355 6989218 2023519..2024139 1 NC_011312.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2024139 ruvA 6989218 ruvA Aliivibrio salmonicida LFI1238 Holliday junction DNA helicase RuvA YP_002263284.1 2023519 D 316275 CDS YP_002263285.1 209695356 6989216 2024185..2025198 1 NC_011312.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2025198 ruvB 6989216 ruvB Aliivibrio salmonicida LFI1238 Holliday junction DNA helicase RuvB YP_002263285.1 2024185 D 316275 CDS YP_002263286.1 209695357 6989217 2025572..2027161 1 NC_011312.1 cytochrome D ubiquinol oxidase subunit I 2027161 cydA 6989217 cydA Aliivibrio salmonicida LFI1238 cytochrome D ubiquinol oxidase subunit I YP_002263286.1 2025572 D 316275 CDS YP_002263287.1 209695358 6988367 2027179..2028315 1 NC_011312.1 cytochrome D ubiquinol oxidase subunit II 2028315 cydB 6988367 cydB Aliivibrio salmonicida LFI1238 cytochrome D ubiquinol oxidase subunit II YP_002263287.1 2027179 D 316275 CDS YP_002263288.1 209695359 6988368 2028327..2028434 1 NC_011312.1 hypothetical protein 2028434 6988368 VSAL_I1892 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263288.1 2028327 D 316275 CDS YP_002263289.1 209695360 6987437 2028427..2028729 1 NC_011312.1 membrane protein 2028729 6987437 VSAL_I1893 Aliivibrio salmonicida LFI1238 membrane protein YP_002263289.1 2028427 D 316275 CDS YP_002263290.1 209695361 6987438 2028919..2029323 1 NC_011312.1 acyl-CoA thioester hydrolase 2029323 ybgC 6987438 ybgC Aliivibrio salmonicida LFI1238 acyl-CoA thioester hydrolase YP_002263290.1 2028919 D 316275 CDS YP_002263291.1 209695362 6989424 2029313..2029999 1 NC_011312.1 TolQ protein, inner membrane component 2029999 tolQ 6989424 tolQ Aliivibrio salmonicida LFI1238 TolQ protein, inner membrane component YP_002263291.1 2029313 D 316275 CDS YP_002263292.1 209695363 6989306 2029999..2030445 1 NC_011312.1 TolR protein, membrane component 2030445 tolR 6989306 tolR Aliivibrio salmonicida LFI1238 TolR protein, membrane component YP_002263292.1 2029999 D 316275 CDS YP_002263293.1 209695364 6989307 2030462..2031469 1 NC_011312.1 TolA protein, membrane component 2031469 tolA 6989307 tolA Aliivibrio salmonicida LFI1238 TolA protein, membrane component YP_002263293.1 2030462 D 316275 CDS YP_002263294.1 209695365 6989303 2031480..2032832 1 NC_011312.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2032832 tolB 6989303 tolB Aliivibrio salmonicida LFI1238 translocation protein TolB YP_002263294.1 2031480 D 316275 CDS YP_002263295.1 209695366 6989304 2032865..2033422 1 NC_011312.1 peptidoglycan-associated lipoprotein 2033422 pal 6989304 pal Aliivibrio salmonicida LFI1238 peptidoglycan-associated lipoprotein YP_002263295.1 2032865 D 316275 CDS YP_002263296.1 209695367 6988942 2033447..2034211 1 NC_011312.1 hypothetical protein 2034211 6988942 VSAL_I1900 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263296.1 2033447 D 316275 CDS YP_002263297.1 209695368 6987439 2034338..2035387 1 NC_011312.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2035387 nadA 6987439 nadA Aliivibrio salmonicida LFI1238 quinolinate synthetase YP_002263297.1 2034338 D 316275 CDS YP_002263298.1 209695369 6988874 complement(2035463..2035921) 1 NC_011312.1 hypothetical protein 2035921 6988874 VSAL_I1902 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263298.1 2035463 R 316275 CDS YP_002263299.1 209695370 6987440 complement(2036033..2037040) 1 NC_011312.1 AraC family transcriptional regulator 2037040 6987440 VSAL_I1903 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002263299.1 2036033 R 316275 CDS YP_002263300.1 209695371 6987441 2037316..2038437 1 NC_011312.1 secretion protein, HlyD family 2038437 6987441 VSAL_I1904 Aliivibrio salmonicida LFI1238 secretion protein, HlyD family YP_002263300.1 2037316 D 316275 CDS YP_002263301.1 209695372 6987442 2038427..2039446 1 NC_011312.1 membrane protein 2039446 6987442 VSAL_I1905 Aliivibrio salmonicida LFI1238 membrane protein YP_002263301.1 2038427 D 316275 CDS YP_002263302.1 209695373 6987443 2039473..2040534 1 NC_011312.1 membrane protein 2040534 6987443 VSAL_I1906 Aliivibrio salmonicida LFI1238 membrane protein YP_002263302.1 2039473 D 316275 CDS YP_002263303.1 209695374 6987444 2040537..2041199 1 NC_011312.1 ion channel 2041199 6987444 VSAL_I1907 Aliivibrio salmonicida LFI1238 ion channel YP_002263303.1 2040537 D 316275 CDS YP_002263304.1 209695375 6987445 complement(2041652..2042254) 1 NC_011312.1 hypothetical protein 2042254 6987445 VSAL_I1908 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263304.1 2041652 R 316275 CDS YP_002263305.1 209695376 6987446 2042634..2043029 1 NC_011312.1 membrane protein 2043029 6987446 VSAL_I1909 Aliivibrio salmonicida LFI1238 membrane protein YP_002263305.1 2042634 D 316275 CDS YP_002263306.1 209695377 6988151 2045374..2045796 1 NC_011312.1 transposase 2045796 6988151 VSAL_I1911 Aliivibrio salmonicida LFI1238 transposase YP_002263306.1 2045374 D 316275 CDS YP_002263307.1 209695378 6987448 2045814..2046380 1 NC_011312.1 transposase 2046380 6987448 VSAL_I1912 Aliivibrio salmonicida LFI1238 transposase YP_002263307.1 2045814 D 316275 CDS YP_002263308.1 209695379 6987449 2047052..2047447 1 NC_011312.1 hypothetical protein 2047447 6987449 VSAL_I1913 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263308.1 2047052 D 316275 CDS YP_002263309.1 209695380 6987450 2047714..2049075 1 NC_011312.1 Similar to Escherichia coli GTP-binding protein HflX UniProt:P25519 (426 aa) fasta scores: E()=7e-30,33.484% id in 442 aa; GTP-binding protein 2049075 6987450 VSAL_I1914 Aliivibrio salmonicida LFI1238 GTP-binding protein YP_002263309.1 2047714 D 316275 CDS YP_002263310.1 209695381 6987451 2049181..2049606 1 NC_011312.1 acetyltransferase 2049606 6987451 VSAL_I1915 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002263310.1 2049181 D 316275 CDS YP_002263311.1 209695382 6987452 complement(2049660..2050640) 1 NC_011312.1 alcohol dehydrogenase 2050640 6987452 VSAL_I1916 Aliivibrio salmonicida LFI1238 alcohol dehydrogenase YP_002263311.1 2049660 R 316275 CDS YP_002263312.1 209695383 6987453 complement(2050803..2051120) 1 NC_011312.1 hypothetical protein 2051120 6987453 VSAL_I1917 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263312.1 2050803 R 316275 CDS YP_002263313.1 209695384 6987454 complement(2051215..2052375) 1 NC_011312.1 Similar to Escherichia coli MFS-type transporter protein ycaD UniProt:P21503 (382 aa) fasta scores: E()=2e-27, 32.275% id in 378 aa; MFS transporter 2052375 6987454 VSAL_I1918 Aliivibrio salmonicida LFI1238 MFS transporter YP_002263313.1 2051215 R 316275 CDS YP_002263314.1 209695385 6987455 2052717..2053427 1 NC_011312.1 membrane protein 2053427 6987455 VSAL_I1919 Aliivibrio salmonicida LFI1238 membrane protein YP_002263314.1 2052717 D 316275 CDS YP_002263315.1 209695386 6987456 complement(2053473..2054327) 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 2054327 6987456 VSAL_I1920 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263315.1 2053473 R 316275 CDS YP_002263316.1 209695387 6987457 complement(2055011..2055976) 1 NC_011312.1 Expression may be regulated by Fur; membrane protein, phage gene 2055976 6987457 VSAL_I1921 Aliivibrio salmonicida LFI1238 membrane protein, phage gene YP_002263316.1 2055011 R 316275 CDS YP_002263317.1 209695388 6987458 complement(2056403..2058628) 1 NC_011312.1 phage protein 2058628 6987458 VSAL_I1922 Aliivibrio salmonicida LFI1238 phage protein YP_002263317.1 2056403 R 316275 CDS YP_002263318.1 209695389 6987460 complement(2059548..2060168) 1 NC_011312.1 Expression may be regulated by Fur; phage protein 2060168 6987460 VSAL_I1924 Aliivibrio salmonicida LFI1238 phage protein YP_002263318.1 2059548 R 316275 CDS YP_002263319.1 209695390 6987461 complement(2060173..2060799) 1 NC_011312.1 Similar to Escherichia coli Immunoglobulin-binding regulator IbrB UniProt:Q8KU23 (214 aa) fasta scores: E()=4.1e-17, 33.649% id in 211 aa; immunoglobulin-binding regulator 2060799 ibrB 6987461 ibrB Aliivibrio salmonicida LFI1238 immunoglobulin-binding regulator YP_002263319.1 2060173 R 316275 CDS YP_002263320.1 209695391 6987462 2063208..2063522 1 NC_011312.1 transposase 2063522 6987462 VSAL_I1928 Aliivibrio salmonicida LFI1238 transposase YP_002263320.1 2063208 D 316275 CDS YP_002263321.1 209695392 6987463 2063519..2063866 1 NC_011312.1 transposase 2063866 6987463 VSAL_I1929 Aliivibrio salmonicida LFI1238 transposase YP_002263321.1 2063519 D 316275 CDS YP_002263322.1 209695393 6987464 2063938..2065425 1 NC_011312.1 transposase 2065425 6987464 VSAL_I1930 Aliivibrio salmonicida LFI1238 transposase YP_002263322.1 2063938 D 316275 CDS YP_002263323.1 209695394 6987465 complement(2065558..2066307) 1 NC_011312.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 2066307 moeB 6987465 moeB Aliivibrio salmonicida LFI1238 molybdopterin biosynthesis protein MoeB YP_002263323.1 2065558 R 316275 CDS YP_002263324.1 209695395 6988820 complement(2066319..2067563) 1 NC_011312.1 molybdopterin biosynthesis protein MoeA 2067563 moeA 6988820 moeA Aliivibrio salmonicida LFI1238 molybdopterin biosynthesis protein MoeA YP_002263324.1 2066319 R 316275 CDS YP_002263325.1 209695396 6988819 2067717..2068370 1 NC_011312.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2068370 folE 6988819 folE Aliivibrio salmonicida LFI1238 GTP cyclohydrolase I YP_002263325.1 2067717 D 316275 CDS YP_002263326.1 209695397 6988556 complement(2068438..2069892) 1 NC_011312.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2069892 cls 6988556 cls Aliivibrio salmonicida LFI1238 cardiolipin synthetase YP_002263326.1 2068438 R 316275 CDS YP_002263327.1 209695398 6988335 2070168..2071514 1 NC_011312.1 sodium-dependent transporter 2071514 6988335 VSAL_I1935 Aliivibrio salmonicida LFI1238 sodium-dependent transporter YP_002263327.1 2070168 D 316275 CDS YP_002263328.1 209695399 6987466 complement(2071607..2072005) 1 NC_011312.1 hypothetical protein 2072005 6987466 VSAL_I1936 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263328.1 2071607 R 316275 CDS YP_002263329.1 209695400 6987467 complement(2072018..2073220) 1 NC_011312.1 signaling protein 2073220 6987467 VSAL_I1937 Aliivibrio salmonicida LFI1238 signaling protein YP_002263329.1 2072018 R 316275 CDS YP_002263330.1 209695401 6987468 complement(2073336..2074061) 1 NC_011312.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2074061 lpxH 6987468 lpxH Aliivibrio salmonicida LFI1238 UDP-2,3-diacylglucosamine hydrolase YP_002263330.1 2073336 R 316275 CDS YP_002263331.1 209695402 6988761 complement(2074118..2074615) 1 NC_011312.1 peptidyl-prolyl cis-trans isomerase B 2074615 ppiB 6988761 ppiB Aliivibrio salmonicida LFI1238 peptidyl-prolyl cis-trans isomerase B YP_002263331.1 2074118 R 316275 CDS YP_002263332.1 209695403 6989001 2074764..2076152 1 NC_011312.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2076152 cysS 6989001 cysS Aliivibrio salmonicida LFI1238 cysteinyl-tRNA synthetase YP_002263332.1 2074764 D 316275 CDS YP_002263333.1 209695404 6988382 2076233..2076811 1 NC_011312.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 2076811 tdk 6988382 tdk Aliivibrio salmonicida LFI1238 thymidine kinase YP_002263333.1 2076233 D 316275 CDS YP_002263334.1 209695405 6989277 2077364..2077678 1 NC_011312.1 transposase 2077678 6989277 VSAL_I1943 Aliivibrio salmonicida LFI1238 transposase YP_002263334.1 2077364 D 316275 CDS YP_002263335.1 209695406 6987469 2077675..2078022 1 NC_011312.1 transposase 2078022 6987469 VSAL_I1944 Aliivibrio salmonicida LFI1238 transposase YP_002263335.1 2077675 D 316275 CDS YP_002263336.1 209695407 6987471 2082386..2084050 1 NC_011312.1 oligopeptide transport system permease protein B 2084050 oppA 6987471 oppA Aliivibrio salmonicida LFI1238 oligopeptide transport system permease protein B YP_002263336.1 2082386 D 316275 CDS YP_002263337.1 209695408 6988934 2085095..2085997 1 NC_011312.1 oligopeptide transport system permease protein C 2085997 oppC 6988934 oppC Aliivibrio salmonicida LFI1238 oligopeptide transport system permease protein C YP_002263337.1 2085095 D 316275 CDS YP_002263338.1 209695409 6988935 2086048..2087013 1 NC_011312.1 oligopeptide transporter ATP-binding protein 2087013 oppD 6988935 oppD Aliivibrio salmonicida LFI1238 oligopeptide transporter ATP-binding protein YP_002263338.1 2086048 D 316275 CDS YP_002263339.1 209695410 6988936 2087013..2088005 1 NC_011312.1 oligopeptide transport ATP-binding protein F 2088005 oppF 6988936 oppF Aliivibrio salmonicida LFI1238 oligopeptide transport ATP-binding protein F YP_002263339.1 2087013 D 316275 CDS YP_002263340.1 209695411 6988937 2088186..2090348 1 NC_011312.1 Possible alternative translational start site after codon 9; methyl-accepting chemotaxis protein 2090348 6988937 VSAL_I1951 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002263340.1 2088186 D 316275 CDS YP_002263341.1 209695412 6987472 complement(2090451..2091623) 1 NC_011312.1 hypothetical protein 2091623 6987472 VSAL_I1952 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263341.1 2090451 R 316275 CDS YP_002263342.1 209695413 6987473 complement(2091688..2092425) 1 NC_011312.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 2092425 pflA 6987473 pflA Aliivibrio salmonicida LFI1238 pyruvate formate lyase-activating enzyme 1 YP_002263342.1 2091688 R 316275 CDS YP_002263343.1 209695414 6988962 complement(2092573..2093898) 1 NC_011312.1 transposase 2093898 6988962 VSAL_I1954 Aliivibrio salmonicida LFI1238 transposase YP_002263343.1 2092573 R 316275 CDS YP_002263344.1 209695415 6987474 complement(2094014..2096290) 1 NC_011312.1 formate acetyltransferase 1 2096290 pflB 6987474 pflB Aliivibrio salmonicida LFI1238 formate acetyltransferase 1 YP_002263344.1 2094014 R 316275 CDS YP_002263345.1 209695416 6988963 complement(2096688..2097548) 1 NC_011312.1 Similar to Escherichia coli formate transporter 1 FocA UniProt:P0AC23 (285 aa) fasta scores: E()=2.7e-69, 63.380% id in 284 aa; formate transporter 1 2097548 6988963 VSAL_I1956 Aliivibrio salmonicida LFI1238 formate transporter 1 YP_002263345.1 2096688 R 316275 CDS YP_002263346.1 209695417 6987475 2098078..2098848 1 NC_011312.1 arginine/ornithine periplasmic binding protein-dependent transporter ATP-binding protein 2098848 aotP 6987475 aotP Aliivibrio salmonicida LFI1238 arginine/ornithine periplasmic binding protein-dependent transporter ATP-binding protein YP_002263346.1 2098078 D 316275 CDS YP_002263347.1 209695418 6988239 2098933..2099709 1 NC_011312.1 arginine/ornithine periplasmic binding protein-dependent transporter 2099709 aotJ 6988239 aotJ Aliivibrio salmonicida LFI1238 arginine/ornithine periplasmic binding protein-dependent transporter YP_002263347.1 2098933 D 316275 CDS YP_002263348.1 209695419 6988237 2099799..2100539 1 NC_011312.1 arginine/ornithine periplasmic binding protein-dependent transporter inner membrane component 2100539 aotQ 6988237 aotQ Aliivibrio salmonicida LFI1238 arginine/ornithine periplasmic binding protein-dependent transporter inner membrane component YP_002263348.1 2099799 D 316275 CDS YP_002263349.1 209695420 6988240 2100542..2101219 1 NC_011312.1 arginine/ornithine periplasmic binding protein-dependent transporter inner membrane component 2101219 aotM 6988240 aotM Aliivibrio salmonicida LFI1238 arginine/ornithine periplasmic binding protein-dependent transporter inner membrane component YP_002263349.1 2100542 D 316275 CDS YP_002263350.1 209695421 6988238 complement(2101503..2102153) 1 NC_011312.1 cofactor involved in the reduction of disulfides; glutaredoxin 2102153 grxB 6988238 grxB Aliivibrio salmonicida LFI1238 glutaredoxin YP_002263350.1 2101503 R 316275 CDS YP_002263351.1 209695422 6988629 complement(2102307..2103113) 1 NC_011312.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 2103113 xthA 6988629 xthA Aliivibrio salmonicida LFI1238 exonuclease III YP_002263351.1 2102307 R 316275 CDS YP_002263352.1 209695423 6988154 2104217..2105389 1 NC_011312.1 secretion protein, HlyD family 2105389 6988154 VSAL_I1963 Aliivibrio salmonicida LFI1238 secretion protein, HlyD family YP_002263352.1 2104217 D 316275 CDS YP_002263353.1 209695424 6987477 complement(2108585..2109268) 1 NC_011312.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 2109268 6987477 VSAL_I1965 Aliivibrio salmonicida LFI1238 queuosine biosynthesis protein QueC YP_002263353.1 2108585 R 316275 CDS YP_002263354.1 209695425 6987478 complement(2109374..2110438) 1 NC_011312.1 pyridoxal-phosphate dependent protein 2110438 6987478 VSAL_I1966 Aliivibrio salmonicida LFI1238 pyridoxal-phosphate dependent protein YP_002263354.1 2109374 R 316275 CDS YP_002263355.1 209695426 6987479 2110558..2111025 1 NC_011312.1 Similar to Zymomonas mobilis Glutamate uptake regulatory protein UniProt:P74996 (164 aa) fasta scores: E()=3.8e-21, 44.371% id in 151 aa; AsnC family transcriptional regulator 2111025 6987479 VSAL_I1967 Aliivibrio salmonicida LFI1238 AsnC family transcriptional regulator YP_002263355.1 2110558 D 316275 CDS YP_002263356.1 209695427 6987480 complement(2111094..2111957) 1 NC_011312.1 acyl-CoA thioesterase II 2111957 tesB 6987480 tesB Aliivibrio salmonicida LFI1238 acyl-CoA thioesterase II YP_002263356.1 2111094 R 316275 CDS YP_002263357.1 209695428 6989278 2112219..2112707 1 NC_011312.1 lipoprotein 2112707 6989278 VSAL_I1969 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263357.1 2112219 D 316275 CDS YP_002263358.1 209695429 6987481 complement(2112749..2113051) 1 NC_011312.1 methylated-DNA methyltransferase 2113051 6987481 VSAL_I1970 Aliivibrio salmonicida LFI1238 methylated-DNA methyltransferase YP_002263358.1 2112749 R 316275 CDS YP_002263359.1 209695430 6987482 2113168..2113908 1 NC_011312.1 membrane protein 2113908 6987482 VSAL_I1971 Aliivibrio salmonicida LFI1238 membrane protein YP_002263359.1 2113168 D 316275 CDS YP_002263360.1 209695431 6987483 complement(2113990..2114901) 1 NC_011312.1 Similar to Escherichia coli Iron transport protein, periplasmic binding protein SitA UniProt:Q2L3R1 (304 aa) fasta scores: E()=1.8e-29, 32.993% id in 294 aa; periplasmic solute binding protein 2114901 6987483 VSAL_I1972 Aliivibrio salmonicida LFI1238 periplasmic solute binding protein YP_002263360.1 2113990 R 316275 CDS YP_002263361.1 209695432 6987484 complement(2114894..2115775) 1 NC_011312.1 Similar to Yersinia pestis Chelated iron transport system membrane protein yfeD UniProt:Q56955 (297 aa) fasta scores: E()=1.2e-19, 28.625% id in 269 aa; ABC transporter 2115775 6987484 VSAL_I1973 Aliivibrio salmonicida LFI1238 ABC transporter YP_002263361.1 2114894 R 316275 CDS YP_002263362.1 209695433 6987485 complement(2115775..2116482) 1 NC_011312.1 Similar to Escherichia coli Iron(III) dicitrate transport ATP-binding protein fecE UniProt:P15031 (255 aa) blastp scores: E()=3e-30; ABC transporter ATP-binding protein 2116482 6987485 VSAL_I1974 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002263362.1 2115775 R 316275 CDS YP_002263363.1 209695434 6987486 2116807..2117469 1 NC_011312.1 lipoprotein 2117469 6987486 VSAL_I1975 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263363.1 2116807 D 316275 CDS YP_002263364.1 209695435 6987487 2117471..2118430 1 NC_011312.1 nickel transporter 2118430 6987487 VSAL_I1976 Aliivibrio salmonicida LFI1238 nickel transporter YP_002263364.1 2117471 D 316275 CDS YP_002263365.1 209695436 6987488 complement(2118542..2120293) 1 NC_011312.1 membrane associated GGDEF protein 2120293 6987488 VSAL_I1977 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002263365.1 2118542 R 316275 CDS YP_002263366.1 209695437 6987489 complement(2120425..2121759) 1 NC_011312.1 signal transduction protein, histidine kinase 2121759 6987489 VSAL_I1978 Aliivibrio salmonicida LFI1238 signal transduction protein, histidine kinase YP_002263366.1 2120425 R 316275 CDS YP_002263367.1 209695438 6987490 complement(2121749..2122408) 1 NC_011312.1 transcriptional regulator 2122408 6987490 VSAL_I1979 Aliivibrio salmonicida LFI1238 transcriptional regulator YP_002263367.1 2121749 R 316275 CDS YP_002263368.1 209695439 6987491 complement(2122413..2122799) 1 NC_011312.1 hypothetical protein 2122799 6987491 VSAL_I1980 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263368.1 2122413 R 316275 CDS YP_002263369.1 209695440 6987492 complement(2122929..2123606) 1 NC_011312.1 membrane protein 2123606 6987492 VSAL_I1981 Aliivibrio salmonicida LFI1238 membrane protein YP_002263369.1 2122929 R 316275 CDS YP_002263370.1 209695441 6987493 complement(2123700..2124287) 1 NC_011312.1 Similar to Haemophilus influenzae DNA transformation protein TfoX UniProt:P43779 fasta scores: E()=2e-07, 28.718% id in 195 aa; DNA transformation protein TfoX 2124287 tfoX 6987493 tfoX Aliivibrio salmonicida LFI1238 DNA transformation protein TfoX YP_002263370.1 2123700 R 316275 CDS YP_002263371.1 209695442 6989279 complement(2124662..2125663) 1 NC_011312.1 HTH-type transcriptional repressor PurR (purine nucleotide synthesis repressor) 2125663 purR 6989279 purR Aliivibrio salmonicida LFI1238 HTH-type transcriptional repressor PurR (purine nucleotide synthesis repressor) YP_002263371.1 2124662 R 316275 CDS YP_002263372.1 209695443 6989044 complement(2125988..2126635) 1 NC_011312.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 2126635 torD 6989044 torD Aliivibrio salmonicida LFI1238 chaperone protein TorD YP_002263372.1 2125988 R 316275 CDS YP_002263373.1 209695444 6989311 2126867..2127565 1 NC_011312.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 2127565 torR 6989311 torR Aliivibrio salmonicida LFI1238 DNA-binding transcriptional regulator TorR YP_002263373.1 2126867 D 316275 CDS YP_002263374.1 209695445 6989312 2127761..2129173 1 NC_011312.1 lipoprotein 2129173 6989312 VSAL_I1986 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263374.1 2127761 D 316275 CDS YP_002263375.1 209695446 6987494 2129295..2130239 1 NC_011312.1 ribosomal large subunit pseudouridine synthase F 2130239 rluF 6987494 rluF Aliivibrio salmonicida LFI1238 ribosomal large subunit pseudouridine synthase F YP_002263375.1 2129295 D 316275 CDS YP_002263376.1 209695447 6988156 2130818..2131369 1 NC_011312.1 hypothetical protein 2131369 6988156 VSAL_I1988 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263376.1 2130818 D 316275 CDS YP_002263377.1 209695448 6987495 2131373..2133082 1 NC_011312.1 ABC transporter ATP-binding protein 2133082 6987495 VSAL_I1989 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002263377.1 2131373 D 316275 CDS YP_002263378.1 209695449 6987496 2133072..2133911 1 NC_011312.1 cobalt transport protein 2133911 6987496 VSAL_I1990 Aliivibrio salmonicida LFI1238 cobalt transport protein YP_002263378.1 2133072 D 316275 CDS YP_002263379.1 209695450 6987497 complement(2133986..2134339) 1 NC_011312.1 hypothetical protein 2134339 6987497 VSAL_I1991 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263379.1 2133986 R 316275 CDS YP_002263380.1 209695451 6987499 2135106..2135987 1 NC_011312.1 transposase 2135987 6987499 VSAL_I1993 Aliivibrio salmonicida LFI1238 transposase YP_002263380.1 2135106 D 316275 CDS YP_002263381.1 209695452 6987501 2136897..2137670 1 NC_011312.1 Similar to Proteus vulgaris Phospholipase A1 precursor PldA UniProt:P37447 (289 aa) fasta scores: E()=2.6e-30, 39.574% id in 235 aa; phospholipase A1 precursor 2137670 6987501 VSAL_I1995 Aliivibrio salmonicida LFI1238 phospholipase A1 precursor YP_002263381.1 2136897 D 316275 CDS YP_002263382.1 209695453 6987502 2137808..2138452 1 NC_011312.1 Similar to Escherichia coli Formate-dependent nitrite reductase complex NrfG subunit UniProt:P32712 (198 aa) fasta scores: E()=4.5e-12, 32.812% id in 192 aa; formate-dependent nitrite reductase complex NrfG subunit 2138452 6987502 VSAL_I1996 Aliivibrio salmonicida LFI1238 formate-dependent nitrite reductase complex NrfG subunit YP_002263382.1 2137808 D 316275 CDS YP_002263383.1 209695454 6987503 complement(2138553..2139989) 1 NC_011312.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 2139989 nrfA 6987503 nrfA Aliivibrio salmonicida LFI1238 cytochrome c552 YP_002263383.1 2138553 R 316275 CDS YP_002263384.1 209695455 6988915 2140482..2141075 1 NC_011312.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 2141075 nrfB 6988915 nrfB Aliivibrio salmonicida LFI1238 cytochrome c nitrite reductase pentaheme subunit YP_002263384.1 2140482 D 316275 CDS YP_002263385.1 209695456 6988916 2141077..2141763 1 NC_011312.1 cytochrome C biogenesis protein NrfC 2141763 nrfC 6988916 nrfC Aliivibrio salmonicida LFI1238 cytochrome C biogenesis protein NrfC YP_002263385.1 2141077 D 316275 CDS YP_002263386.1 209695457 6988917 2141765..2142721 1 NC_011312.1 cytochrome C biogenesis protein NrfD 2142721 nrfD 6988917 nrfD Aliivibrio salmonicida LFI1238 cytochrome C biogenesis protein NrfD YP_002263386.1 2141765 D 316275 CDS YP_002263387.1 209695458 6988918 2142795..2144681 1 NC_011312.1 cytochrome C biogenesis protein CcmF 2144681 ccmF 6988918 ccmF Aliivibrio salmonicida LFI1238 cytochrome C biogenesis protein CcmF YP_002263387.1 2142795 D 316275 CDS YP_002263388.1 209695459 6988310 2144678..2145205 1 NC_011312.1 Similar to Escherichia coli Thiol:disulfide interchange protein dsbE UniProt:P0AA86 (185 aa) fasta scores: E()=1.3e-20, 37.805% id in 164 aa; thiol/disulfide interchange protein 2145205 6988310 VSAL_I2002 Aliivibrio salmonicida LFI1238 thiol/disulfide interchange protein YP_002263388.1 2144678 D 316275 CDS YP_002263389.1 209695460 6987504 2145205..2145660 1 NC_011312.1 Similar to Escherichia coli Formate-dependent nitrite reductase complex nrfF subunit precursor UniProt:P32711 (127 aa) fasta scores: E()=1.4e-16, 50.505% id in 99 aa; cytochrome c biogenesis protein 2145660 6987504 VSAL_I2003 Aliivibrio salmonicida LFI1238 cytochrome c biogenesis protein YP_002263389.1 2145205 D 316275 CDS YP_002263390.1 209695461 6987505 complement(2145663..2146376) 1 NC_011312.1 aspartate racemase 2146376 6987505 VSAL_I2004 Aliivibrio salmonicida LFI1238 aspartate racemase YP_002263390.1 2145663 R 316275 CDS YP_002263391.1 209695462 6987506 complement(2146411..2147712) 1 NC_011312.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 2147712 dcuA 6987506 dcuA Aliivibrio salmonicida LFI1238 anaerobic C4-dicarboxylate transporter YP_002263391.1 2146411 R 316275 CDS YP_002263392.1 209695463 6988393 2148040..2148921 1 NC_011312.1 Expression may be regulated by Fur; LysR family transcriptional regulator 2148921 6988393 VSAL_I2006 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002263392.1 2148040 D 316275 CDS YP_002263393.1 209695464 6987507 complement(2148918..2149679) 1 NC_011312.1 Similar to Escherichia coli Phosphatidylglycerophosphatase B PgpB UniProt:P0A924 (254 aa) fasta scores: E()=1e-09, 30.270% id in 185 aa; phosphatidylglycerophosphatase B 2149679 6987507 VSAL_I2007 Aliivibrio salmonicida LFI1238 phosphatidylglycerophosphatase B YP_002263393.1 2148918 R 316275 CDS YP_002263394.1 209695465 6987510 complement(2152275..2152622) 1 NC_011312.1 transposase 2152622 6987510 VSAL_I2010 Aliivibrio salmonicida LFI1238 transposase YP_002263394.1 2152275 R 316275 CDS YP_002263395.1 209695466 6987511 complement(2152619..2152933) 1 NC_011312.1 transposase 2152933 6987511 VSAL_I2011 Aliivibrio salmonicida LFI1238 transposase YP_002263395.1 2152619 R 316275 CDS YP_002263396.1 209695467 6987515 2157061..2157942 1 NC_011312.1 transposase 2157942 6987515 VSAL_I2015 Aliivibrio salmonicida LFI1238 transposase YP_002263396.1 2157061 D 316275 CDS YP_002263397.1 209695468 6987517 2158722..2160326 1 NC_011312.1 MFS transporter 2160326 6987517 VSAL_I2017 Aliivibrio salmonicida LFI1238 MFS transporter YP_002263397.1 2158722 D 316275 CDS YP_002263398.1 209695469 6987518 2160396..2161100 1 NC_011312.1 ribosomal small subunit pseudouridine synthase A (16S pseudouridine 516 synthase) 2161100 rsuA 6987518 rsuA Aliivibrio salmonicida LFI1238 ribosomal small subunit pseudouridine synthase A (16S pseudouridine 516 synthase) YP_002263398.1 2160396 D 316275 CDS YP_002263399.1 209695470 6989214 2161267..2162472 1 NC_011312.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein 2162472 bcr 6989214 bcr Aliivibrio salmonicida LFI1238 bicyclomycin/multidrug efflux system protein YP_002263399.1 2161267 D 316275 CDS YP_002263400.1 209695471 6988288 2162473..2163162 1 NC_011312.1 hypothetical protein 2163162 6988288 VSAL_I2020 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263400.1 2162473 D 316275 CDS YP_002263401.1 209695472 6987520 2164796..2166175 1 NC_011312.1 Expression may be regulated by Fur; multidrug efflux pump 2166175 vcmH 6987520 vcmH Aliivibrio salmonicida LFI1238 multidrug efflux pump YP_002263401.1 2164796 D 316275 CDS YP_002263402.1 209695473 6989405 2166290..2166961 1 NC_011312.1 Similar to Agrobacterium tumefaciens AttE UniProt:O32734 (264 aa) fasta scores: E()=2.7e-30, 48.387% id in 217 aa. May be required for virulence and attachment to host cells; ABC transporter ATP-binding protein 2166961 6989405 VSAL_I2023 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002263402.1 2166290 D 316275 CDS YP_002263403.1 209695474 6987521 2166942..2169395 1 NC_011312.1 Similar to C-terminal part of Agrobacterium tumefaciens AttG UniProt:Q79C15 (415 aa) fasta scores: E()=1.3e-25, 27.654% id in 405 aa. May be required for virulence and attachment to host cells; permease 2169395 6987521 VSAL_I2024 Aliivibrio salmonicida LFI1238 permease YP_002263403.1 2166942 D 316275 CDS YP_002263404.1 209695475 6987522 2169395..2170516 1 NC_011312.1 Similar to Agrobacterium tumefaciens AttH UniProt:O32737 (355 aa) fasta scores: E()=9.9e-42, 33.841% id in 328 aa. May be required for virulence and attachment to host cells; membrane protein 2170516 6987522 VSAL_I2025 Aliivibrio salmonicida LFI1238 membrane protein YP_002263404.1 2169395 D 316275 CDS YP_002263405.1 209695476 6987523 2170673..2171821 1 NC_011312.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 2171821 nhaA 6987523 nhaA Aliivibrio salmonicida LFI1238 pH-dependent sodium/proton antiporter YP_002263405.1 2170673 D 316275 CDS YP_002263406.1 209695477 6988895 complement(2171879..2173204) 1 NC_011312.1 transposase 2173204 6988895 VSAL_I2027 Aliivibrio salmonicida LFI1238 transposase YP_002263406.1 2171879 R 316275 CDS YP_002263407.1 209695478 6987524 2173803..2175005 1 NC_011312.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2175005 6987524 VSAL_I2028 Aliivibrio salmonicida LFI1238 trans-2-enoyl-CoA reductase YP_002263407.1 2173803 D 316275 CDS YP_002263408.1 209695479 6987525 complement(2175149..2176831) 1 NC_011312.1 hypothetical protein 2176831 6987525 VSAL_I2029 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263408.1 2175149 R 316275 CDS YP_002263409.1 209695480 6987526 complement(2176977..2177240) 1 NC_011312.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 2177240 grxA 6987526 grxA Aliivibrio salmonicida LFI1238 glutaredoxin YP_002263409.1 2176977 R 316275 CDS YP_002263410.1 209695481 6988628 complement(2177492..2178346) 1 NC_011312.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2178346 hexR 6988628 hexR Aliivibrio salmonicida LFI1238 DNA-binding transcriptional regulator HexR YP_002263410.1 2177492 R 316275 CDS YP_002263411.1 209695482 6988652 complement(2178698..2180341) 1 NC_011312.1 Similar to Haemophilus influenzae L-2,4-diaminobutyrate decarboxylase ddc UniProt:P71362 (511 aa) fasta scores: E()=5e-24, 26.609% id in 466 aa; pyridoxal-dependent decarboxylase 2180341 6988652 VSAL_I2032 Aliivibrio salmonicida LFI1238 pyridoxal-dependent decarboxylase YP_002263411.1 2178698 R 316275 CDS YP_002263412.1 209695483 6987527 complement(2180520..2181032) 1 NC_011312.1 hypothetical protein 2181032 6987527 VSAL_I2033 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263412.1 2180520 R 316275 CDS YP_002263413.1 209695484 6987528 complement(2181204..2182037) 1 NC_011312.1 Lack of similarity at the C-terminus in comparison to other proteins; membrane protein 2182037 6987528 VSAL_I2034 Aliivibrio salmonicida LFI1238 membrane protein YP_002263413.1 2181204 R 316275 CDS YP_002263414.1 209695485 6987529 complement(2182127..2183053) 1 NC_011312.1 hypothetical protein 2183053 6987529 VSAL_I2035 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263414.1 2182127 R 316275 CDS YP_002263415.1 209695486 6987531 complement(2183809..2184375) 1 NC_011312.1 transposase 2184375 6987531 VSAL_I2037 Aliivibrio salmonicida LFI1238 transposase YP_002263415.1 2183809 R 316275 CDS YP_002263416.1 209695487 6987532 complement(2184393..2184815) 1 NC_011312.1 transposase 2184815 6987532 VSAL_I2038 Aliivibrio salmonicida LFI1238 transposase YP_002263416.1 2184393 R 316275 CDS YP_002263417.1 209695488 6987533 complement(2185049..2185600) 1 NC_011312.1 hypothetical protein 2185600 6987533 VSAL_I2039 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263417.1 2185049 R 316275 CDS YP_002263418.1 209695489 6987534 2185906..2187207 1 NC_011312.1 lipoprotein 2187207 6987534 VSAL_I2040 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263418.1 2185906 D 316275 CDS YP_002263419.1 209695490 6987535 2187397..2188479 1 NC_011312.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2188479 serC 6987535 serC Aliivibrio salmonicida LFI1238 phosphoserine aminotransferase YP_002263419.1 2187397 D 316275 CDS YP_002263420.1 209695491 6989241 complement(2188557..2190044) 1 NC_011312.1 transposase 2190044 6989241 VSAL_I2042 Aliivibrio salmonicida LFI1238 transposase YP_002263420.1 2188557 R 316275 CDS YP_002263421.1 209695492 6987536 complement(2190116..2190463) 1 NC_011312.1 transposase 2190463 6987536 VSAL_I2043 Aliivibrio salmonicida LFI1238 transposase YP_002263421.1 2190116 R 316275 CDS YP_002263422.1 209695493 6987537 complement(2190460..2190774) 1 NC_011312.1 transposase 2190774 6987537 VSAL_I2044 Aliivibrio salmonicida LFI1238 transposase YP_002263422.1 2190460 R 316275 CDS YP_002263423.1 209695494 6987539 2191622..2192140 1 NC_011312.1 acetyltransferase (GNAT) family protein 2192140 6987539 VSAL_I2046 Aliivibrio salmonicida LFI1238 acetyltransferase (GNAT) family protein YP_002263423.1 2191622 D 316275 CDS YP_002263424.1 209695495 6987540 2192149..2193606 1 NC_011312.1 membrane protein 2193606 6987540 VSAL_I2047 Aliivibrio salmonicida LFI1238 membrane protein YP_002263424.1 2192149 D 316275 CDS YP_002263425.1 209695496 6987541 complement(2193662..2194351) 1 NC_011312.1 multiprotein complex assembly protein 2194351 6987541 VSAL_I2048 Aliivibrio salmonicida LFI1238 multiprotein complex assembly protein YP_002263425.1 2193662 R 316275 CDS YP_002263426.1 209695497 6987542 complement(2194501..2195376) 1 NC_011312.1 mechanosensitive ion channel 2195376 6987542 VSAL_I2049 Aliivibrio salmonicida LFI1238 mechanosensitive ion channel YP_002263426.1 2194501 R 316275 CDS YP_002263427.1 209695498 6987543 complement(2195378..2197738) 1 NC_011312.1 membrane protein 2197738 6987543 VSAL_I2050 Aliivibrio salmonicida LFI1238 membrane protein YP_002263427.1 2195378 R 316275 CDS YP_002263428.1 209695499 6987544 complement(2197997..2198878) 1 NC_011312.1 transposase 2198878 6987544 VSAL_I2051 Aliivibrio salmonicida LFI1238 transposase YP_002263428.1 2197997 R 316275 CDS YP_002263429.1 209695500 6987546 complement(2200109..2200771) 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein yccA UniProt:P0AAC6 (219 aa) fasta scores: E()=1.5e-36, 61.009% id in 218 aa; hypothetical protein 2200771 6987546 VSAL_I2053 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263429.1 2200109 R 316275 CDS YP_002263430.1 209695501 6987547 complement(2201012..2201761) 1 NC_011312.1 general L-amino acid transport ATP-binding subunit 2201761 aapP 6987547 aapP Aliivibrio salmonicida LFI1238 general L-amino acid transport ATP-binding subunit YP_002263430.1 2201012 R 316275 CDS YP_002263431.1 209695502 6988206 complement(2201786..2202883) 1 NC_011312.1 general L-amino acid ABC transporter permease protein 2202883 aapM 6988206 aapM Aliivibrio salmonicida LFI1238 general L-amino acid ABC transporter permease protein YP_002263431.1 2201786 R 316275 CDS YP_002263432.1 209695503 6988205 complement(2202886..2204007) 1 NC_011312.1 general L-amino acid ABC transporter permease protein 2204007 aapQ 6988205 aapQ Aliivibrio salmonicida LFI1238 general L-amino acid ABC transporter permease protein YP_002263432.1 2202886 R 316275 CDS YP_002263433.1 209695504 6988207 complement(2204096..2205124) 1 NC_011312.1 general L-amino acid-binding periplasmic protein precursor 2205124 aapJ 6988207 aapJ Aliivibrio salmonicida LFI1238 general L-amino acid-binding periplasmic protein precursor YP_002263433.1 2204096 R 316275 CDS YP_002263434.1 209695505 6988204 2205516..2206457 1 NC_011312.1 virulence protein VirC 2206457 6988204 VSAL_I2058 Aliivibrio salmonicida LFI1238 virulence protein VirC YP_002263434.1 2205516 D 316275 CDS YP_002263435.1 209695506 6987548 2206485..2207171 1 NC_011312.1 transcription regulator, GntR family 2207171 6987548 VSAL_I2059 Aliivibrio salmonicida LFI1238 transcription regulator, GntR family YP_002263435.1 2206485 D 316275 CDS YP_002263436.1 209695507 6987549 complement(2207303..2207992) 1 NC_011312.1 hypothetical protein 2207992 6987549 VSAL_I2060 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263436.1 2207303 R 316275 CDS YP_002263437.1 209695508 6987550 complement(2208223..2208918) 1 NC_011312.1 hypothetical protein 2208918 6987550 VSAL_I2061 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263437.1 2208223 R 316275 CDS YP_002263438.1 209695509 6987551 2209199..2212231 1 NC_011312.1 FAD linked oxidase 2212231 6987551 VSAL_I2062 Aliivibrio salmonicida LFI1238 FAD linked oxidase YP_002263438.1 2209199 D 316275 CDS YP_002263439.1 209695510 6987552 2212400..2213992 1 NC_011312.1 hypothetical protein 2213992 6987552 VSAL_I2063 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263439.1 2212400 D 316275 CDS YP_002263440.1 209695511 6987553 2214121..2214540 1 NC_011312.1 hypothetical protein 2214540 6987553 VSAL_I2064 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263440.1 2214121 D 316275 CDS YP_002263441.1 209695512 6987554 2214988..2215143 1 NC_011312.1 hypothetical protein 2215143 6987554 VSAL_I2065 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263441.1 2214988 D 316275 CDS YP_002263442.1 209695513 6987555 2215436..2216650 1 NC_011312.1 Similar to Bacillus halodurans Reverse transcriptase-maturase-endonuclease UniProt:Q9JWR9 (418 aa) fasta scores: E()=1.9e-39, 34.314% id in 408 aa; group II intron reverse transcriptase/maturase 2216650 6987555 VSAL_I2066 Aliivibrio salmonicida LFI1238 group II intron reverse transcriptase/maturase YP_002263442.1 2215436 D 316275 CDS YP_002263443.1 209695514 6988157 2216849..2219170 1 NC_011312.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 2219170 zntA 6988157 zntA Aliivibrio salmonicida LFI1238 zinc/cadmium/mercury/lead-transporting ATPase YP_002263443.1 2216849 D 316275 CDS YP_002263444.1 209695515 6989440 complement(2219231..2221753) 1 NC_011312.1 membrane protein 2221753 6989440 VSAL_I2068 Aliivibrio salmonicida LFI1238 membrane protein YP_002263444.1 2219231 R 316275 CDS YP_002263445.1 209695516 6987558 complement(2222500..2223381) 1 NC_011312.1 transposase 2223381 6987558 VSAL_I2070 Aliivibrio salmonicida LFI1238 transposase YP_002263445.1 2222500 R 316275 CDS YP_002263446.1 209695517 6987559 2223705..2224043 1 NC_011312.1 hypothetical protein 2224043 6987559 VSAL_I2071 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263446.1 2223705 D 316275 CDS YP_002263447.1 209695518 6987560 complement(2224188..2224493) 1 NC_011312.1 hypothetical protein 2224493 6987560 VSAL_I2072 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263447.1 2224188 R 316275 CDS YP_002263448.1 209695519 6987561 complement(2224789..2225283) 1 NC_011312.1 hypothetical protein 2225283 6987561 VSAL_I2073 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263448.1 2224789 R 316275 CDS YP_002263449.1 209695520 6987562 2225514..2226170 1 NC_011312.1 Similar to Escherichia coli Chloramphenicol acetyltransferase 3 UniProt:P00484 (213 aa) fasta scores: E()=6.6e-13, 26.415% id in 212 aa; chloramphenicol acetyltransferase 2226170 6987562 VSAL_I2074 Aliivibrio salmonicida LFI1238 chloramphenicol acetyltransferase YP_002263449.1 2225514 D 316275 CDS YP_002263450.1 209695521 6987563 2226488..2227576 1 NC_011312.1 methyl-accepting chemotaxis protein 2227576 6987563 VSAL_I2075 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002263450.1 2226488 D 316275 CDS YP_002263451.1 209695522 6987564 complement(2227871..2228557) 1 NC_011312.1 hypothetical protein 2228557 6987564 VSAL_I2076 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263451.1 2227871 R 316275 CDS YP_002263452.1 209695523 6987565 complement(2228617..2228859) 1 NC_011312.1 hypothetical protein 2228859 6987565 VSAL_I2077a Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263452.1 2228617 R 316275 CDS YP_002263453.1 209695524 6987566 complement(2228872..2229957) 1 NC_011312.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2229957 serC 6987566 serC Aliivibrio salmonicida LFI1238 phosphoserine aminotransferase YP_002263453.1 2228872 R 316275 CDS YP_002263454.1 209695525 6987567 complement(2229962..2230702) 1 NC_011312.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2230702 6987567 VSAL_I2079 Aliivibrio salmonicida LFI1238 glutamine amidotransferase YP_002263454.1 2229962 R 316275 CDS YP_002263455.1 209695526 6987568 2230843..2231649 1 NC_011312.1 AraC family transcriptional regulator 2231649 6987568 VSAL_I2080 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002263455.1 2230843 D 316275 CDS YP_002263456.1 209695527 6987569 complement(2231708..2233240) 1 NC_011312.1 Similar to Neisseria gonorrhoeae Phospholipase D (Fragment) UniProt:Q6W764 (525 aa) fasta scores: E()=1.9e-53, 36.031% id in 519 aa; phospholipase D 2233240 6987569 VSAL_I2081 Aliivibrio salmonicida LFI1238 phospholipase D YP_002263456.1 2231708 R 316275 CDS YP_002263457.1 209695528 6987570 2233560..2235284 1 NC_011312.1 helicase (DEAD/DEAH box helicase) 2235284 6987570 VSAL_I2082 Aliivibrio salmonicida LFI1238 helicase (DEAD/DEAH box helicase) YP_002263457.1 2233560 D 316275 CDS YP_002263458.1 209695529 6987571 complement(2235303..2235740) 1 NC_011312.1 hypothetical protein 2235740 6987571 VSAL_I2083 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263458.1 2235303 R 316275 CDS YP_002263459.1 209695530 6987572 2235954..2236232 1 NC_011312.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2236232 rplY 6987572 rplY Aliivibrio salmonicida LFI1238 50S ribosomal protein L25 YP_002263459.1 2235954 D 316275 CDS YP_002263460.1 209695531 6989168 2236539..2236982 1 NC_011312.1 heat shock protein 2236982 6989168 VSAL_I2085 Aliivibrio salmonicida LFI1238 heat shock protein YP_002263460.1 2236539 D 316275 CDS YP_002263461.1 209695532 6987574 complement(2238694..2239041) 1 NC_011312.1 transposase 2239041 6987574 VSAL_I2087 Aliivibrio salmonicida LFI1238 transposase YP_002263461.1 2238694 R 316275 CDS YP_002263462.1 209695533 6987575 complement(2239038..2239352) 1 NC_011312.1 transposase 2239352 6987575 VSAL_I2088 Aliivibrio salmonicida LFI1238 transposase YP_002263462.1 2239038 R 316275 CDS YP_002263463.1 209695534 6988466 complement(2240661..2241386) 1 NC_011312.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2241386 fabG 6988466 fabG Aliivibrio salmonicida LFI1238 3-ketoacyl-ACP reductase YP_002263463.1 2240661 R 316275 CDS YP_002263464.1 209695535 6988468 complement(2241398..2241859) 1 NC_011312.1 beta-hydroxydecanoyl-ACP dehydrase 2241859 6988468 VSAL_I2091 Aliivibrio salmonicida LFI1238 beta-hydroxydecanoyl-ACP dehydrase YP_002263464.1 2241398 R 316275 CDS YP_002263465.1 209695536 6987577 complement(2241856..2243061) 1 NC_011312.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2243061 6987577 VSAL_I2092 Aliivibrio salmonicida LFI1238 3-oxoacyl-ACP synthase YP_002263465.1 2241856 R 316275 CDS YP_002263466.1 209695537 6987578 complement(2243054..2243683) 1 NC_011312.1 lipoprotein 2243683 6987578 VSAL_I2093 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263466.1 2243054 R 316275 CDS YP_002263467.1 209695538 6987579 complement(2243694..2246030) 1 NC_011312.1 membrane protein 2246030 6987579 VSAL_I2094 Aliivibrio salmonicida LFI1238 membrane protein YP_002263467.1 2243694 R 316275 CDS YP_002263468.1 209695539 6987580 complement(2246035..2246655) 1 NC_011312.1 outer membrane protein 2246655 6987580 VSAL_I2095 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002263468.1 2246035 R 316275 CDS YP_002263469.1 209695540 6987581 complement(2246648..2247106) 1 NC_011312.1 Similar to Pseudomonas sp. 4-hydroxybenzoyl CoA thioesterase (PDB 1LO8), evalue=2e-05 identity=(29, 104); thioesterase 2247106 6987581 VSAL_I2096 Aliivibrio salmonicida LFI1238 thioesterase YP_002263469.1 2246648 R 316275 CDS YP_002263470.1 209695541 6987582 complement(2247106..2248641) 1 NC_011312.1 Similar to Homo sapiens Histidine ammonia-lyase UniProt:P42357 (657 aa) fasta scores: E()=2.2e-52, 33.594% id in 512 aa; phenylalanine and histidine ammonia-lyase 2248641 6987582 VSAL_I2097 Aliivibrio salmonicida LFI1238 phenylalanine and histidine ammonia-lyase YP_002263470.1 2247106 R 316275 CDS YP_002263471.1 209695542 6987583 complement(2248631..2250322) 1 NC_011312.1 glycosyl transferase family protein 2250322 6987583 VSAL_I2098 Aliivibrio salmonicida LFI1238 glycosyl transferase family protein YP_002263471.1 2248631 R 316275 CDS YP_002263472.1 209695543 6987584 complement(2250325..2250699) 1 NC_011312.1 hypothetical protein 2250699 6987584 VSAL_I2099 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263472.1 2250325 R 316275 CDS YP_002263473.1 209695544 6987585 complement(2250711..2252084) 1 NC_011312.1 Similar to Bacillus brevis Gramicidin synthease 1 (PDB 1AMU), evalue=1e-06 identity=(38, 136); hypothetical protein 2252084 6987585 VSAL_I2100 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263473.1 2250711 R 316275 CDS YP_002263474.1 209695545 6987586 complement(2252081..2252641) 1 NC_011312.1 membrane protein 2252641 6987586 VSAL_I2101 Aliivibrio salmonicida LFI1238 membrane protein YP_002263474.1 2252081 R 316275 CDS YP_002263475.1 209695546 6987587 complement(2252641..2252892) 1 NC_011312.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2252892 6987587 VSAL_I2102 Aliivibrio salmonicida LFI1238 acyl carrier protein YP_002263475.1 2252641 R 316275 CDS YP_002263476.1 209695547 6987588 complement(2252901..2253158) 1 NC_011312.1 acyl carrier protein 2253158 6987588 VSAL_I2103 Aliivibrio salmonicida LFI1238 acyl carrier protein YP_002263476.1 2252901 R 316275 CDS YP_002263477.1 209695548 6987589 complement(2253166..2253963) 1 NC_011312.1 acyltransferase 2253963 6987589 VSAL_I2104 Aliivibrio salmonicida LFI1238 acyltransferase YP_002263477.1 2253166 R 316275 CDS YP_002263478.1 209695549 6987590 complement(2253965..2254696) 1 NC_011312.1 hypothetical protein 2254696 6987590 VSAL_I2105 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263478.1 2253965 R 316275 CDS YP_002263479.1 209695550 6987591 2254826..2255401 1 NC_011312.1 lipoprotein 2255401 6987591 VSAL_I2106 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263479.1 2254826 D 316275 CDS YP_002263480.1 209695551 6987592 2255434..2256573 1 NC_011312.1 Similar to Streptomyces glaucescens Multifunctional cyclase-dehydratase-3-O-methyl transferase tcmN UniProt:P16559 (494 aa) fasta scores: E()=1.3e-05, 23.934% id in 305 aa; O-methyltransferase 2256573 6987592 VSAL_I2107 Aliivibrio salmonicida LFI1238 O-methyltransferase YP_002263480.1 2255434 D 316275 CDS YP_002263481.1 209695552 6987593 2256654..2257895 1 NC_011312.1 FAD dependent oxidoreductase 2257895 6987593 VSAL_I2108 Aliivibrio salmonicida LFI1238 FAD dependent oxidoreductase YP_002263481.1 2256654 D 316275 CDS YP_002263482.1 209695553 6987594 complement(2257981..2258577) 1 NC_011312.1 hypothetical protein 2258577 6987594 VSAL_I2109 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263482.1 2257981 R 316275 CDS YP_002263483.1 209695554 6987595 2258762..2260495 1 NC_011312.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2260495 argS 6987595 argS Aliivibrio salmonicida LFI1238 arginyl-tRNA synthetase YP_002263483.1 2258762 D 316275 CDS YP_002263484.1 209695555 6988257 complement(2260574..2261023) 1 NC_011312.1 Expression may be stress-induced; hypothetical protein 2261023 6988257 VSAL_I2111 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263484.1 2260574 R 316275 CDS YP_002263485.1 209695556 6987596 2261339..2262535 1 NC_011312.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2262535 ackA 6987596 ackA Aliivibrio salmonicida LFI1238 acetate kinase YP_002263485.1 2261339 D 316275 CDS YP_002263486.1 209695557 6988218 2262635..2264806 1 NC_011312.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2264806 pta 6988218 pta Aliivibrio salmonicida LFI1238 phosphate acetyltransferase YP_002263486.1 2262635 D 316275 CDS YP_002263487.1 209695558 6989026 complement(2264949..2266436) 1 NC_011312.1 transposase 2266436 6989026 VSAL_I2114 Aliivibrio salmonicida LFI1238 transposase YP_002263487.1 2264949 R 316275 CDS YP_002263488.1 209695559 6987597 complement(2266508..2266855) 1 NC_011312.1 transposase 2266855 6987597 VSAL_I2115 Aliivibrio salmonicida LFI1238 transposase YP_002263488.1 2266508 R 316275 CDS YP_002263489.1 209695560 6987598 complement(2266852..2267166) 1 NC_011312.1 transposase 2267166 6987598 VSAL_I2116 Aliivibrio salmonicida LFI1238 transposase YP_002263489.1 2266852 R 316275 CDS YP_002263490.1 209695561 6987600 2269187..2270008 1 NC_011312.1 Expression may be regulated by Fur; phosphate ABC transporter extracellular solute-binding protein 2270008 6987600 VSAL_I2118 Aliivibrio salmonicida LFI1238 phosphate ABC transporter extracellular solute-binding protein YP_002263490.1 2269187 D 316275 CDS YP_002263491.1 209695562 6987601 2270085..2271011 1 NC_011312.1 Similar to Streptococcus pneumoniae Transmembrane protein PstC UniProt:Q9X4T1 (271 aa) fasta scores: E()=2.7e-34, 46.840% id in 269 aa; phosphate ABC transporter permease 2271011 pstC 6987601 pstC Aliivibrio salmonicida LFI1238 phosphate ABC transporter permease YP_002263491.1 2270085 D 316275 CDS YP_002263492.1 209695563 6989024 2271016..2271870 1 NC_011312.1 Similar to Streptococcus pneumoniae Phosphate ABC transporter PstA UniProt:Q9X4T2 (271 aa) fasta scores: E()=5.8e-37, 47.566% id in 267 aa; phosphate ABC transporter permease 2271870 pstA 6989024 pstA Aliivibrio salmonicida LFI1238 phosphate ABC transporter permease YP_002263492.1 2271016 D 316275 CDS YP_002263493.1 209695564 6989020 2271945..2272694 1 NC_011312.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 2272694 pstB 6989020 pstB Aliivibrio salmonicida LFI1238 phosphate ABC transporter ATP-binding protein YP_002263493.1 2271945 D 316275 CDS YP_002263494.1 209695565 6988714 complement(2273538..2273888) 1 NC_011312.1 hypothetical protein 2273888 6988714 VSAL_I2124 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263494.1 2273538 R 316275 CDS YP_002263495.1 209695566 6987603 complement(2274021..2274284) 1 NC_011312.1 hypothetical protein 2274284 6987603 VSAL_I2125 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263495.1 2274021 R 316275 CDS YP_002263496.1 209695567 6987604 complement(2274292..2274684) 1 NC_011312.1 hypothetical protein 2274684 6987604 VSAL_I2126 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263496.1 2274292 R 316275 CDS YP_002263497.1 209695568 6987605 2274875..2275048 1 NC_011312.1 hypothetical protein 2275048 6987605 VSAL_I2127 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263497.1 2274875 D 316275 CDS YP_002263498.1 209695569 6987606 2275254..2275844 1 NC_011312.1 hypothetical protein 2275844 6987606 VSAL_I2128 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263498.1 2275254 D 316275 CDS YP_002263499.1 209695570 6987607 2275921..2276547 1 NC_011312.1 hypothetical protein 2276547 6987607 VSAL_I2129 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263499.1 2275921 D 316275 CDS YP_002263500.1 209695571 6987608 complement(2276649..2278289) 1 NC_011312.1 Similar to Pseudomonas aeruginosa Chemotactic transducer PctB UniProt:O32443 (629 aa) fasta scores: E()=1e-36, 38.950% id in 362 aa; methyl-accepting chemotaxis protein 2278289 6987608 VSAL_I2130 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002263500.1 2276649 R 316275 CDS YP_002263501.1 209695572 6987609 complement(2278417..2281293) 1 NC_011312.1 response regulator, histidine kinase 2281293 6987609 VSAL_I2131 Aliivibrio salmonicida LFI1238 response regulator, histidine kinase YP_002263501.1 2278417 R 316275 CDS YP_002263502.1 209695573 6987610 2281368..2282363 1 NC_011312.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 2282363 torT 6987610 torT Aliivibrio salmonicida LFI1238 TMAO reductase system periplasmic protein TorT YP_002263502.1 2281368 D 316275 CDS YP_002263503.1 209695574 6989313 2282428..2282883 1 NC_011312.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 2282883 mgsA 6989313 mgsA Aliivibrio salmonicida LFI1238 methylglyoxal synthase YP_002263503.1 2282428 D 316275 CDS YP_002263504.1 209695575 6988802 complement(2282975..2285038) 1 NC_011312.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 2285038 helD 6988802 helD Aliivibrio salmonicida LFI1238 DNA helicase IV YP_002263504.1 2282975 R 316275 CDS YP_002263505.1 209695576 6987611 2285204..2287408 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein YccS UniProt:P75870 (717 aa) fasta scores: E()=8.4e-107, 43.115% id in 719 aa. Possible alternative translational start site after codon 10; hypothetical protein 2287408 6987611 VSAL_I2135 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263505.1 2285204 D 316275 CDS YP_002263506.1 209695577 6987612 complement(2287475..2288620) 1 NC_011312.1 Possible alternative translational start site after codon 4; carboxynorspermidine decarboxylase 2288620 nspC 6987612 nspC Aliivibrio salmonicida LFI1238 carboxynorspermidine decarboxylase YP_002263506.1 2287475 R 316275 CDS YP_002263507.1 209695578 6988919 complement(2288695..2289939) 1 NC_011312.1 saccharopine dehydrogenase 2289939 6988919 VSAL_I2137 Aliivibrio salmonicida LFI1238 saccharopine dehydrogenase YP_002263507.1 2288695 R 316275 CDS YP_002263508.1 209695579 6987613 complement(2289942..2292845) 1 NC_011312.1 Similar to N-terminal part of Rhizobium meliloti Diaminobutyrate--2-oxoglutarate aminotransferase RhbA UniProt:Q9Z3R2 (470 aa) fasta scores: E()=3.9e-85, 51.306% id in 421 aa, which is involved in siderophore biosynthesis; diaminobutyrate--2-oxoglutarate aminotransferase 2292845 6987613 VSAL_I2138 Aliivibrio salmonicida LFI1238 diaminobutyrate--2-oxoglutarate aminotransferase YP_002263508.1 2289942 R 316275 CDS YP_002263509.1 209695580 6988161 complement(2294246..2294800) 1 NC_011312.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2294800 pgsA 6988161 pgsA Aliivibrio salmonicida LFI1238 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002263509.1 2294246 R 316275 CDS YP_002263510.1 209695581 6988968 complement(2294845..2296671) 1 NC_011312.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2296671 uvrC 6988968 uvrC Aliivibrio salmonicida LFI1238 excinuclease ABC subunit C YP_002263510.1 2294845 R 316275 CDS YP_002263511.1 209695582 6989367 complement(2296671..2297315) 1 NC_011312.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2297315 varA 6989367 varA Aliivibrio salmonicida LFI1238 response regulator YP_002263511.1 2296671 R 316275 CDS YP_002263512.1 209695583 6989371 complement(2297501..2299870) 1 NC_011312.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 2299870 polB 6989371 polB Aliivibrio salmonicida LFI1238 DNA polymerase II YP_002263512.1 2297501 R 316275 CDS YP_002263513.1 209695584 6988993 complement(2299874..2300650) 1 NC_011312.1 hypothetical protein 2300650 6988993 VSAL_I2143 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263513.1 2299874 R 316275 CDS YP_002263514.1 209695585 6987615 complement(2300762..2302348) 1 NC_011312.1 Similar to Bacillus subtilis Malate-2H(+)/Na(+)-lactate antiporter MleN UniProt:P54571 (468 aa) fasta scores: E()=2.6e-06, 31.034% id in 174 aa. Expression may be regulated by Fur; sodium/proton antiporter 2302348 6987615 VSAL_I2144 Aliivibrio salmonicida LFI1238 sodium/proton antiporter YP_002263514.1 2300762 R 316275 CDS YP_002263515.1 209695586 6987616 2302858..2303271 1 NC_011312.1 DNA binding protein, global metabolism regulator 2303271 6987616 VSAL_I2145 Aliivibrio salmonicida LFI1238 DNA binding protein, global metabolism regulator YP_002263515.1 2302858 D 316275 CDS YP_002263516.1 209695587 6987617 complement(2303350..2304102) 1 NC_011312.1 Similar to Escherichia coli MltA-interacting protein precursor MipA UniProt:P0A908 (248 aa) fasta scores: E()=4.3e-20, 29.876% id in 241 aa; MltA-interacting protein MipA 2304102 6987617 VSAL_I2146 Aliivibrio salmonicida LFI1238 MltA-interacting protein MipA YP_002263516.1 2303350 R 316275 CDS YP_002263517.1 209695588 6987618 complement(2304376..2305218) 1 NC_011312.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2305218 fadR 6987618 fadR Aliivibrio salmonicida LFI1238 fatty acid metabolism regulator YP_002263517.1 2304376 R 316275 CDS YP_002263518.1 209695589 6988479 2305666..2307261 1 NC_011312.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2307261 nhaB 6988479 nhaB Aliivibrio salmonicida LFI1238 sodium/proton antiporter YP_002263518.1 2305666 D 316275 CDS YP_002263519.1 209695590 6987619 2307336..2307851 1 NC_011312.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2307851 dsbB 6987619 dsbB Aliivibrio salmonicida LFI1238 disulfide bond formation protein B YP_002263519.1 2307336 D 316275 CDS YP_002263520.1 209695591 6988424 complement(2307941..2308555) 1 NC_011312.1 hypothetical protein 2308555 6988424 VSAL_I2150 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263520.1 2307941 R 316275 CDS YP_002263521.1 209695592 6987620 2308657..2309217 1 NC_011312.1 Similar to Vibrio cholerae Immature fimbrillin precursor FimA UniProt:Q79F49 (175 aa) fasta scores: E()=9.3e-08, 31.548% id in 168 aa; membrane protein 2309217 6987620 VSAL_I2151 Aliivibrio salmonicida LFI1238 membrane protein YP_002263521.1 2308657 D 316275 CDS YP_002263522.1 209695593 6987621 2309269..2310216 1 NC_011312.1 tRNA-dihydrouridine synthase C 2310216 dusC 6987621 dusC Aliivibrio salmonicida LFI1238 tRNA-dihydrouridine synthase C YP_002263522.1 2309269 D 316275 CDS YP_002263523.1 209695594 6988433 complement(2310236..2311708) 1 NC_011312.1 membrane associated GGDEF protein 2311708 6988433 VSAL_I2153 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002263523.1 2310236 R 316275 CDS YP_002263524.1 209695595 6987622 complement(2311829..2312656) 1 NC_011312.1 Expression may be stress-induced; hypothetical protein 2312656 6987622 VSAL_I2154 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263524.1 2311829 R 316275 CDS YP_002263525.1 209695596 6987623 complement(2312740..2314683) 1 NC_011312.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 2314683 topB 6987623 topB Aliivibrio salmonicida LFI1238 DNA topoisomerase III YP_002263525.1 2312740 R 316275 CDS YP_002263526.1 209695597 6989310 complement(2314770..2316773) 1 NC_011312.1 2,4-dienoyl-CoA reductase 2316773 fadH 6989310 fadH Aliivibrio salmonicida LFI1238 2,4-dienoyl-CoA reductase YP_002263526.1 2314770 R 316275 CDS YP_002263527.1 209695598 6988476 2317002..2318855 1 NC_011312.1 protease IV (endopeptidase IV) 2318855 sppA 6988476 sppA Aliivibrio salmonicida LFI1238 protease IV (endopeptidase IV) YP_002263527.1 2317002 D 316275 CDS YP_002263528.1 209695599 6989256 2318948..2319961 1 NC_011312.1 converts asparagine to aspartate and ammonia; asparaginase 2319961 ansA 6989256 ansA Aliivibrio salmonicida LFI1238 asparaginase YP_002263528.1 2318948 D 316275 CDS YP_002263529.1 209695600 6988236 complement(2320044..2321159) 1 NC_011312.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2321159 6988236 VSAL_I2159 Aliivibrio salmonicida LFI1238 aspartate-semialdehyde dehydrogenase YP_002263529.1 2320044 R 316275 CDS YP_002263530.1 209695601 6987625 2323253..2323567 1 NC_011312.1 transposase 2323567 6987625 VSAL_I2161 Aliivibrio salmonicida LFI1238 transposase YP_002263530.1 2323253 D 316275 CDS YP_002263531.1 209695602 6987626 2323564..2323911 1 NC_011312.1 transposase 2323911 6987626 VSAL_I2162 Aliivibrio salmonicida LFI1238 transposase YP_002263531.1 2323564 D 316275 CDS YP_002263532.1 209695603 6987627 2323983..2325470 1 NC_011312.1 transposase 2325470 6987627 VSAL_I2163 Aliivibrio salmonicida LFI1238 transposase YP_002263532.1 2323983 D 316275 CDS YP_002263533.1 209695604 6987629 2328370..2328840 1 NC_011312.1 Expression may be stress-induced; phosphohistidine phosphatase SixA 2328840 6987629 VSAL_I2165 Aliivibrio salmonicida LFI1238 phosphohistidine phosphatase SixA YP_002263533.1 2328370 D 316275 CDS YP_002263534.1 209695605 6987630 complement(2328885..2329418) 1 NC_011312.1 hypothetical protein 2329418 6987630 VSAL_I2166 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263534.1 2328885 R 316275 CDS YP_002263535.1 209695606 6987631 2329458..2330402 1 NC_011312.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2330402 6987631 VSAL_I2167 Aliivibrio salmonicida LFI1238 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_002263535.1 2329458 D 316275 CDS YP_002263536.1 209695607 6987632 2330804..2331889 1 NC_011312.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2331889 aroC 6987632 aroC Aliivibrio salmonicida LFI1238 chorismate synthase YP_002263536.1 2330804 D 316275 CDS YP_002263537.1 209695608 6988260 complement(2332077..2332718) 1 NC_011312.1 Similar to Escherichia coli inner membrane protein YicG UniProt:P0AGM3 (205 aa) fasta scores: E()=6.1e-41, 58.794% id in 199 aa; hypothetical protein 2332718 6988260 VSAL_I2169 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263537.1 2332077 R 316275 CDS YP_002263538.1 209695609 6987633 complement(2332851..2333357) 1 NC_011312.1 Similar to Salmonella typhimurium Mg(2+) transport ATPase protein C MgtC UniProt:P22037 (231 aa) fasta scores: E()=2.4e-08, 34.921% id in 126 aa; MgtC/SapB transporter 2333357 6987633 VSAL_I2170 Aliivibrio salmonicida LFI1238 MgtC/SapB transporter YP_002263538.1 2332851 R 316275 CDS YP_002263539.1 209695610 6987634 2333546..2334076 1 NC_011312.1 hypothetical protein 2334076 6987634 VSAL_I2171 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263539.1 2333546 D 316275 CDS YP_002263540.1 209695611 6987635 2334084..2334341 1 NC_011312.1 hypothetical protein 2334341 6987635 VSAL_I2172 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263540.1 2334084 D 316275 CDS YP_002263541.1 209695612 6987636 2334448..2335581 1 NC_011312.1 diguanylate cyclase 2335581 6987636 VSAL_I2173 Aliivibrio salmonicida LFI1238 diguanylate cyclase YP_002263541.1 2334448 D 316275 CDS YP_002263542.1 209695613 6987637 complement(2335631..2336056) 1 NC_011312.1 hypothetical protein 2336056 6987637 VSAL_I2174 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263542.1 2335631 R 316275 CDS YP_002263543.1 209695614 6987638 2336134..2337075 1 NC_011312.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2337075 6987638 VSAL_I2175 Aliivibrio salmonicida LFI1238 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_002263543.1 2336134 D 316275 CDS YP_002263544.1 209695615 6987639 2337528..2338928 1 NC_011312.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 2338928 clcA 6987639 clcA Aliivibrio salmonicida LFI1238 chloride channel protein YP_002263544.1 2337528 D 316275 CDS YP_002263545.1 209695616 6988330 complement(2339267..2340754) 1 NC_011312.1 transposase 2340754 6988330 VSAL_I2178 Aliivibrio salmonicida LFI1238 transposase YP_002263545.1 2339267 R 316275 CDS YP_002263546.1 209695617 6987640 complement(2340826..2341173) 1 NC_011312.1 transposase 2341173 6987640 VSAL_I2179 Aliivibrio salmonicida LFI1238 transposase YP_002263546.1 2340826 R 316275 CDS YP_002263547.1 209695618 6987641 complement(2341170..2341484) 1 NC_011312.1 transposase 2341484 6987641 VSAL_I2180 Aliivibrio salmonicida LFI1238 transposase YP_002263547.1 2341170 R 316275 CDS YP_002263548.1 209695619 6987642 complement(2342095..2342904) 1 NC_011312.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 2342904 rrmA 6987642 rrmA Aliivibrio salmonicida LFI1238 23S rRNA methyltransferase A YP_002263548.1 2342095 R 316275 CDS YP_002263549.1 209695620 6989209 2343403..2344461 1 NC_011312.1 Similar to Enterobacter cloacae Outer membrane pore protein E precursor PhoE UniProt:Q47490 (350 aa) fasta scores: E()=4.6e-11, 28.460% id in 383 aa; outer membrane protein, porin 2344461 6989209 VSAL_I2182 Aliivibrio salmonicida LFI1238 outer membrane protein, porin YP_002263549.1 2343403 D 316275 CDS YP_002263550.1 209695621 6987643 complement(2344658..2345158) 1 NC_011312.1 hypothetical protein 2345158 6987643 VSAL_I2183 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263550.1 2344658 R 316275 CDS YP_002263551.1 209695622 6987644 complement(2345262..2346926) 1 NC_011312.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 2346926 fhs 6987644 fhs Aliivibrio salmonicida LFI1238 formate--tetrahydrofolate ligase YP_002263551.1 2345262 R 316275 CDS YP_002263552.1 209695623 6987645 2348783..2349457 1 NC_011312.1 HTH-type transcriptional regulator, two-component response regulator 2349457 6987645 VSAL_I2186 Aliivibrio salmonicida LFI1238 HTH-type transcriptional regulator, two-component response regulator YP_002263552.1 2348783 D 316275 CDS YP_002263553.1 209695624 6987646 2349468..2349938 1 NC_011312.1 hypothetical protein 2349938 6987646 VSAL_I2187 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263553.1 2349468 D 316275 CDS YP_002263554.1 209695625 6987647 2349981..2350862 1 NC_011312.1 phospholipase 2350862 6987647 VSAL_I2188 Aliivibrio salmonicida LFI1238 phospholipase YP_002263554.1 2349981 D 316275 CDS YP_002263555.1 209695626 6987648 complement(2350959..2352155) 1 NC_011312.1 Similar to Escherichia coli ATP-dependent RNA helicase RhlE UniProt:P25888 (454 aa) fasta scores: E()=3.9e-67, 53.665% id in 382 aa; ATP-dependent RNA helicase 2352155 rhlE 6987648 rhlE Aliivibrio salmonicida LFI1238 ATP-dependent RNA helicase YP_002263555.1 2350959 R 316275 CDS YP_002263556.1 209695627 6989093 complement(2352426..2353952) 1 NC_011312.1 integral membrane protein 2353952 6989093 VSAL_I2190 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002263556.1 2352426 R 316275 CDS YP_002263557.1 209695628 6987649 complement(2353969..2354469) 1 NC_011312.1 membrane protein 2354469 6987649 VSAL_I2191 Aliivibrio salmonicida LFI1238 membrane protein YP_002263557.1 2353969 R 316275 CDS YP_002263558.1 209695629 6987650 complement(2354605..2355591) 1 NC_011312.1 hypothetical protein 2355591 6987650 VSAL_I2192 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263558.1 2354605 R 316275 CDS YP_002263559.1 209695630 6987651 complement(2355915..2358008) 1 NC_011312.1 methyl-accepting chemotaxis protein 2358008 6987651 VSAL_I2193 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002263559.1 2355915 R 316275 CDS YP_002263560.1 209695631 6987652 2358242..2358670 1 NC_011312.1 lipoprotein 2358670 6987652 VSAL_I2194 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263560.1 2358242 D 316275 CDS YP_002263561.1 209695632 6987653 complement(2358786..2360156) 1 NC_011312.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2360156 purB 6987653 purB Aliivibrio salmonicida LFI1238 adenylosuccinate lyase YP_002263561.1 2358786 R 316275 CDS YP_002263562.1 209695633 6989035 complement(2360227..2360844) 1 NC_011312.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2360844 6989035 VSAL_I2196 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263562.1 2360227 R 316275 CDS YP_002263563.1 209695634 6987654 complement(2360856..2361980) 1 NC_011312.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2361980 mnmA 6987654 mnmA Aliivibrio salmonicida LFI1238 tRNA-specific 2-thiouridylase MnmA YP_002263563.1 2360856 R 316275 CDS YP_002263564.1 209695635 6989325 complement(2362097..2363635) 1 NC_011312.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 2363635 norR 6989325 norR Aliivibrio salmonicida LFI1238 anaerobic nitric oxide reductase transcriptional regulator YP_002263564.1 2362097 R 316275 CDS YP_002263565.1 209695636 6988902 2363823..2365322 1 NC_011312.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2365322 norV 6988902 norV Aliivibrio salmonicida LFI1238 anaerobic nitric oxide reductase flavorubredoxin YP_002263565.1 2363823 D 316275 CDS YP_002263566.1 209695637 6988903 2365334..2366479 1 NC_011312.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2366479 norW 6988903 norW Aliivibrio salmonicida LFI1238 nitric oxide reductase YP_002263566.1 2365334 D 316275 CDS YP_002263567.1 209695638 6988904 2366492..2367265 1 NC_011312.1 ferredoxin--NADP reductase 2367265 fpr 6988904 fpr Aliivibrio salmonicida LFI1238 ferredoxin--NADP reductase YP_002263567.1 2366492 D 316275 CDS YP_002263568.1 209695639 6988559 2367304..2367639 1 NC_011312.1 hypothetical protein 2367639 6988559 VSAL_I2202 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263568.1 2367304 D 316275 CDS YP_002263569.1 209695640 6987655 2367699..2367971 1 NC_011312.1 hypothetical protein 2367971 6987655 VSAL_I2203 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263569.1 2367699 D 316275 CDS YP_002263570.1 209695641 6987656 complement(2368327..2368959) 1 NC_011312.1 ribosomal large subunit pseudouridine synthase E 2368959 rluE 6987656 rluE Aliivibrio salmonicida LFI1238 ribosomal large subunit pseudouridine synthase E YP_002263570.1 2368327 R 316275 CDS YP_002263571.1 209695642 6989112 2369130..2371358 1 NC_011312.1 isocitrate dehydrogenase 2371358 icd 6989112 icd Aliivibrio salmonicida LFI1238 isocitrate dehydrogenase YP_002263571.1 2369130 D 316275 CDS YP_002263572.1 209695643 6988701 complement(2371466..2372983) 1 NC_011312.1 Similar to Bacillus subtilis Stage V sporulation protein R SpoVR UniProt:P37875 (468 aa) fasta scores: E()=6.1e-33, 32.976% id in 467 aa; SpoVR family protein 2372983 6988701 VSAL_I2206 Aliivibrio salmonicida LFI1238 SpoVR family protein YP_002263572.1 2371466 R 316275 CDS YP_002263573.1 209695644 6987657 complement(2372995..2374263) 1 NC_011312.1 hypothetical protein 2374263 6987657 VSAL_I2207 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263573.1 2372995 R 316275 CDS YP_002263574.1 209695645 6987658 complement(2374331..2376265) 1 NC_011312.1 Similar to Bacillus subtilis Protein PrkA UniProt:P39134 (631 aa) fasta scores: E()=2.1e-47, 33.390% id in 587 aa; PrkA serine protein kinase 2376265 prkA 6987658 prkA Aliivibrio salmonicida LFI1238 PrkA serine protein kinase YP_002263574.1 2374331 R 316275 CDS YP_002263575.1 209695646 6989008 complement(2376454..2377311) 1 NC_011312.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2377311 folD 6989008 folD Aliivibrio salmonicida LFI1238 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_002263575.1 2376454 R 316275 CDS YP_002263576.1 209695647 6988162 2377762..2379219 1 NC_011312.1 hypothetical protein 2379219 6988162 VSAL_I2210 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263576.1 2377762 D 316275 CDS YP_002263577.1 209695648 6987659 complement(2379264..2379809) 1 NC_011312.1 lipoprotein 2379809 6987659 VSAL_I2211 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263577.1 2379264 R 316275 CDS YP_002263578.1 209695649 6987660 complement(2379927..2380148) 1 NC_011312.1 cold shock-like protein CspD 2380148 cspD 6987660 cspD Aliivibrio salmonicida LFI1238 cold shock-like protein CspD YP_002263578.1 2379927 R 316275 CDS YP_002263579.1 209695650 6988355 2380544..2380864 1 NC_011312.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2380864 clpS 6988355 clpS Aliivibrio salmonicida LFI1238 ATP-dependent Clp protease adaptor protein ClpS YP_002263579.1 2380544 D 316275 CDS YP_002263580.1 209695651 6988334 2380907..2383159 1 NC_011312.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 2383159 clpA 6988334 clpA Aliivibrio salmonicida LFI1238 ATP-dependent Clp protease ATP-binding subunit YP_002263580.1 2380907 D 316275 CDS YP_002263581.1 209695652 6988331 complement(2383273..2383491) 1 NC_011312.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2383491 infA 6988331 infA Aliivibrio salmonicida LFI1238 translation initiation factor IF-1 YP_002263581.1 2383273 R 316275 CDS YP_002263582.1 209695653 6988716 complement(2383581..2384273) 1 NC_011312.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2384273 6988716 VSAL_I2216 Aliivibrio salmonicida LFI1238 arginyl-tRNA-protein transferase YP_002263582.1 2383581 R 316275 CDS YP_002263583.1 209695654 6987661 complement(2384277..2384987) 1 NC_011312.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2384987 aat 6987661 aat Aliivibrio salmonicida LFI1238 leucyl/phenylalanyl-tRNA--protein transferase YP_002263583.1 2384277 R 316275 CDS YP_002263584.1 209695655 6988208 2385186..2386469 1 NC_011312.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2386469 aroA 6988208 aroA Aliivibrio salmonicida LFI1238 3-phosphoshikimate 1-carboxyvinyltransferase YP_002263584.1 2385186 D 316275 CDS YP_002263585.1 209695656 6988258 2386625..2387299 1 NC_011312.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2387299 cmk 6988258 cmk Aliivibrio salmonicida LFI1238 cytidylate kinase YP_002263585.1 2386625 D 316275 CDS YP_002263586.1 209695657 6988336 2387396..2389069 1 NC_011312.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2389069 rpsA 6988336 rpsA Aliivibrio salmonicida LFI1238 30S ribosomal protein S1 YP_002263586.1 2387396 D 316275 CDS YP_002263587.1 209695658 6989188 2389129..2389410 1 NC_011312.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2389410 ihfB 6989188 ihfB Aliivibrio salmonicida LFI1238 integration host factor subunit beta YP_002263587.1 2389129 D 316275 CDS YP_002263588.1 209695659 6988703 2389599..2389883 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein YciS UniProt:P0ACV4 (102 aa) fasta scores: E()=1.6e-10, 42.169% id in 83 aa; hypothetical protein 2389883 yciS 6988703 yciS Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263588.1 2389599 D 316275 CDS YP_002263589.1 209695660 6989426 2389891..2391060 1 NC_011312.1 tetratricopeptide repeat protein 2391060 6989426 VSAL_I2224 Aliivibrio salmonicida LFI1238 tetratricopeptide repeat protein YP_002263589.1 2389891 D 316275 CDS YP_002263590.1 209695661 6987662 2391116..2391820 1 NC_011312.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2391820 pyrF 6987662 pyrF Aliivibrio salmonicida LFI1238 orotidine 5'-phosphate decarboxylase YP_002263590.1 2391116 D 316275 CDS YP_002263591.1 209695662 6989051 complement(2391897..2393957) 1 NC_011312.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2393957 metG 6989051 metG Aliivibrio salmonicida LFI1238 methionyl-tRNA synthetase YP_002263591.1 2391897 R 316275 CDS YP_002263592.1 209695663 6988793 2394090..2395157 1 NC_011312.1 hypothetical protein 2395157 6988793 VSAL_I2227 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263592.1 2394090 D 316275 CDS YP_002263593.1 209695664 6987663 2395269..2395916 1 NC_011312.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2395916 udk 6987663 udk Aliivibrio salmonicida LFI1238 uridine kinase YP_002263593.1 2395269 D 316275 CDS YP_002263594.1 209695665 6989355 2396081..2398240 1 NC_011312.1 Similar to Escherichia coli Protein asmA precursor UniProt:P28249 (617 aa) fasta scores: E()=6.8e-07, 20.642% id in 717 aa. Possible alternative translational start site after codon 4. Expression may be regulated by Fur; outer membrane assembly protein 2398240 6989355 VSAL_I2229 Aliivibrio salmonicida LFI1238 outer membrane assembly protein YP_002263594.1 2396081 D 316275 CDS YP_002263595.1 209695666 6987664 complement(2398309..2398911) 1 NC_011312.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 2398911 btuR 6987664 btuR Aliivibrio salmonicida LFI1238 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_002263595.1 2398309 R 316275 CDS YP_002263596.1 209695667 6988295 2399172..2400494 1 NC_011312.1 Similar to Vibrio vulnificus Hypothetical protein vv2095. UniProt:Q7MJR5 (509 aa) fasta scores: E()=1.7e-84, 55.000% id in 440 aa. No significant database matches to the full length CDS. Expression may be regulated by Fur; metal dependent phosphohydrolase 2400494 6988295 VSAL_I2231 Aliivibrio salmonicida LFI1238 metal dependent phosphohydrolase YP_002263596.1 2399172 D 316275 CDS YP_002263597.1 209695668 6987665 complement(2400552..2402099) 1 NC_011312.1 sulfate transporter 2402099 6987665 VSAL_I2232 Aliivibrio salmonicida LFI1238 sulfate transporter YP_002263597.1 2400552 R 316275 CDS YP_002263598.1 209695669 6987666 complement(2402274..2405321) 1 NC_011312.1 ribonuclease E 2405321 rne 6987666 rne Aliivibrio salmonicida LFI1238 ribonuclease E YP_002263598.1 2402274 R 316275 CDS YP_002263599.1 209695670 6989130 2405765..2406712 1 NC_011312.1 ribosomal large subunit pseudouridine synthase C (rRNA uridine isomerase C) (rRNA pseudouridylate synthase C) 2406712 rluC 6989130 rluC Aliivibrio salmonicida LFI1238 ribosomal large subunit pseudouridine synthase C (rRNA uridine isomerase C) (rRNA pseudouridylate synthase C) YP_002263599.1 2405765 D 316275 CDS YP_002263600.1 209695671 6989110 complement(2406791..2407372) 1 NC_011312.1 Similar to Escherichia coli Maf-like protein YceF UniProt:P0A729 (194 aa) fasta scores: E()=2.1e-41, 59.677% id in 186 aa; Maf-like protein 2407372 6989110 VSAL_I2235 Aliivibrio salmonicida LFI1238 Maf-like protein YP_002263600.1 2406791 R 316275 CDS YP_002263601.1 209695672 6987667 2407506..2408027 1 NC_011312.1 hypothetical protein 2408027 6987667 VSAL_I2236 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263601.1 2407506 D 316275 CDS YP_002263602.1 209695673 6987668 2408044..2408214 1 NC_011312.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2408214 rpmF 6987668 rpmF Aliivibrio salmonicida LFI1238 50S ribosomal protein L32 YP_002263602.1 2408044 D 316275 CDS YP_002263603.1 209695674 6989175 2408225..2409250 1 NC_011312.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2409250 plsX 6989175 plsX Aliivibrio salmonicida LFI1238 glycerol-3-phosphate acyltransferase PlsX YP_002263603.1 2408225 D 316275 CDS YP_002263604.1 209695675 6988989 2409256..2410209 1 NC_011312.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2410209 fabH 6988989 fabH Aliivibrio salmonicida LFI1238 3-oxoacyl-ACP synthase YP_002263604.1 2409256 D 316275 CDS YP_002263605.1 209695676 6988470 2410270..2411193 1 NC_011312.1 malonyl CoA-acyl carrier protein transacylase 2411193 fabD 6988470 fabD Aliivibrio salmonicida LFI1238 malonyl CoA-acyl carrier protein transacylase YP_002263605.1 2410270 D 316275 CDS YP_002263606.1 209695677 6988465 2411210..2411947 1 NC_011312.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2411947 fabG 6988465 fabG Aliivibrio salmonicida LFI1238 3-ketoacyl-ACP reductase YP_002263606.1 2411210 D 316275 CDS YP_002263607.1 209695678 6988469 2412442..2413683 1 NC_011312.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 2413683 fabF 6988469 fabF Aliivibrio salmonicida LFI1238 3-oxoacyl-(acyl carrier protein) synthase II YP_002263607.1 2412442 D 316275 CDS YP_002263608.1 209695679 6988467 2413782..2414588 1 NC_011312.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 2414588 6988467 VSAL_I2243 Aliivibrio salmonicida LFI1238 4-amino-4-deoxychorismate lyase YP_002263608.1 2413782 D 316275 CDS YP_002263609.1 209695680 6987669 2414582..2415592 1 NC_011312.1 Possible alternative translational start site after codon 42; aminodeoxychorismate lyase 2415592 6987669 VSAL_I2244 Aliivibrio salmonicida LFI1238 aminodeoxychorismate lyase YP_002263609.1 2414582 D 316275 CDS YP_002263610.1 209695681 6987670 2415595..2416227 1 NC_011312.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2416227 tmk 6987670 tmk Aliivibrio salmonicida LFI1238 thymidylate kinase YP_002263610.1 2415595 D 316275 CDS YP_002263611.1 209695682 6989301 2416217..2417188 1 NC_011312.1 Similar to Escherichia coli DNA polymerase III delta' subunit UniProt:P28631 (334 aa) fasta scores: E()=5.8e-21, 29.467% id in 319 aa; DNA polymerase III subunit delta' 2417188 6989301 VSAL_I2246 Aliivibrio salmonicida LFI1238 DNA polymerase III subunit delta' YP_002263611.1 2416217 D 316275 CDS YP_002263612.1 209695683 6987671 2417190..2417960 1 NC_011312.1 TatD-related deoxyribonuclease 2417960 6987671 VSAL_I2247 Aliivibrio salmonicida LFI1238 TatD-related deoxyribonuclease YP_002263612.1 2417190 D 316275 CDS YP_002263613.1 209695684 6987672 2418149..2418463 1 NC_011312.1 transposase 2418463 6987672 VSAL_I2248 Aliivibrio salmonicida LFI1238 transposase YP_002263613.1 2418149 D 316275 CDS YP_002263614.1 209695685 6987673 2418460..2418807 1 NC_011312.1 transposase 2418807 6987673 VSAL_I2249 Aliivibrio salmonicida LFI1238 transposase YP_002263614.1 2418460 D 316275 CDS YP_002263615.1 209695686 6987674 2418879..2420366 1 NC_011312.1 transposase 2420366 6987674 VSAL_I2250 Aliivibrio salmonicida LFI1238 transposase YP_002263615.1 2418879 D 316275 CDS YP_002263616.1 209695687 6987675 2420806..2421687 1 NC_011312.1 transposase 2421687 6987675 VSAL_I2251 Aliivibrio salmonicida LFI1238 transposase YP_002263616.1 2420806 D 316275 CDS YP_002263617.1 209695688 6987676 2421738..2423168 1 NC_011312.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 2423168 ptsG 6987676 ptsG Aliivibrio salmonicida LFI1238 PTS system glucose-specific transporter subunit IIBC YP_002263617.1 2421738 D 316275 CDS YP_002263618.1 209695689 6989028 complement(2423227..2423868) 1 NC_011312.1 hypothetical protein 2423868 6989028 VSAL_I2253 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263618.1 2423227 R 316275 CDS YP_002263619.1 209695690 6987677 complement(2424041..2425507) 1 NC_011312.1 sodium-dependent transporter 2425507 6987677 VSAL_I2254 Aliivibrio salmonicida LFI1238 sodium-dependent transporter YP_002263619.1 2424041 R 316275 CDS YP_002263620.1 209695691 6987678 complement(2425889..2426470) 1 NC_011312.1 hypothetical protein 2426470 6987678 VSAL_I2255 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263620.1 2425889 R 316275 CDS YP_002263621.1 209695692 6987680 2430852..2431079 1 NC_011312.1 Expression may be regulated by Fur; ferrous iron transport protein FeoA 2431079 6987680 VSAL_I2257 Aliivibrio salmonicida LFI1238 ferrous iron transport protein FeoA YP_002263621.1 2430852 D 316275 CDS YP_002263622.1 209695693 6987681 2431081..2433357 1 NC_011312.1 ferrous iron transport protein FeoB 2433357 feoB 6987681 feoB Aliivibrio salmonicida LFI1238 ferrous iron transport protein FeoB YP_002263622.1 2431081 D 316275 CDS YP_002263623.1 209695694 6988491 2433354..2433596 1 NC_011312.1 hypothetical protein 2433596 6988491 VSAL_I2259 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263623.1 2433354 D 316275 CDS YP_002263624.1 209695695 6987682 2433749..2434063 1 NC_011312.1 transposase 2434063 6987682 VSAL_I2260 Aliivibrio salmonicida LFI1238 transposase YP_002263624.1 2433749 D 316275 CDS YP_002263625.1 209695696 6987683 2434060..2434407 1 NC_011312.1 transposase 2434407 6987683 VSAL_I2261 Aliivibrio salmonicida LFI1238 transposase YP_002263625.1 2434060 D 316275 CDS YP_002263626.1 209695697 6987684 2434479..2435966 1 NC_011312.1 transposase 2435966 6987684 VSAL_I2262 Aliivibrio salmonicida LFI1238 transposase YP_002263626.1 2434479 D 316275 CDS YP_002263627.1 209695698 6987686 complement(2436860..2438347) 1 NC_011312.1 transposase 2438347 6987686 VSAL_I2264 Aliivibrio salmonicida LFI1238 transposase YP_002263627.1 2436860 R 316275 CDS YP_002263628.1 209695699 6987688 complement(2438762..2439076) 1 NC_011312.1 transposase 2439076 6987688 VSAL_I2266b Aliivibrio salmonicida LFI1238 transposase YP_002263628.1 2438762 R 316275 CDS YP_002263630.1 209695700 6987691 complement(2441416..2442759) 1 NC_011312.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2442759 fadI 6987691 fadI Aliivibrio salmonicida LFI1238 3-ketoacyl-CoA thiolase YP_002263630.1 2441416 R 316275 CDS YP_002263631.1 209695701 6988478 2443564..2444811 1 NC_011312.1 Similar to Escherichia coli Long-chain fatty acid transport protein precursor FadL UniProt:P10384 (448 aa) fasta scores: E()=4.5e-22, 34.273% id in 461 aa; outer membrane protein transport protein 2444811 6988478 VSAL_I2269 Aliivibrio salmonicida LFI1238 outer membrane protein transport protein YP_002263631.1 2443564 D 316275 CDS YP_002263632.1 209695702 6987692 2445467..2446783 1 NC_011312.1 Similar to Escherichia coli Long-chain fatty acid transport protein precursor FadL UniProt:P10384 (448 aa) fasta scores: E()=6.3e-15, 32.096% id in 458 aa; outer membrane protein transport protein 2446783 6987692 VSAL_I2270 Aliivibrio salmonicida LFI1238 outer membrane protein transport protein YP_002263632.1 2445467 D 316275 CDS YP_002263633.1 209695703 6987693 2446974..2447582 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein yjdF UniProt:P39270 (209 aa) fasta scores: E()=8.4e-15, 29.381% id in 194 aa; hypothetical protein 2447582 6987693 VSAL_I2271 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263633.1 2446974 D 316275 CDS YP_002263634.1 209695704 6987694 complement(2447622..2448407) 1 NC_011312.1 lipoprotein VacJ precursor 2448407 vacJ 6987694 vacJ Aliivibrio salmonicida LFI1238 lipoprotein VacJ precursor YP_002263634.1 2447622 R 316275 CDS YP_002263635.1 209695705 6989369 complement(2448561..2449775) 1 NC_011312.1 Similar to Escherichia coli cytochrome C biogenesis protein ccmH precursor UniProt:P0ABM9 (350 aa) fasta scores: E()=1.2e-21, 34.419% id in 215 aa; cytochrome C biogenesis protein precursor 2449775 6989369 VSAL_I2273 Aliivibrio salmonicida LFI1238 cytochrome C biogenesis protein precursor YP_002263635.1 2448561 R 316275 CDS YP_002263636.1 209695706 6987695 complement(2449772..2450278) 1 NC_011312.1 Similar to N-terminal part of Escherichia coli cytochrome C biogenesis protein CcmH precursor UniProt:P0ABM9 (350 aa) fasta scores: E()=4.6e-19, 49.612% id in 129 aa; cytochrome C biogenesis protein CcmH precursor 2450278 ccmH 6987695 ccmH Aliivibrio salmonicida LFI1238 cytochrome C biogenesis protein CcmH precursor YP_002263636.1 2449772 R 316275 CDS YP_002263637.1 209695707 6988312 complement(2450284..2450832) 1 NC_011312.1 thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG) 2450832 dsbE 6988312 dsbE Aliivibrio salmonicida LFI1238 thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG) YP_002263637.1 2450284 R 316275 CDS YP_002263638.1 209695708 6988427 complement(2450835..2452793) 1 NC_011312.1 cytochrome C biogenesis protein CcmF 2452793 ccmF 6988427 ccmF Aliivibrio salmonicida LFI1238 cytochrome C biogenesis protein CcmF YP_002263638.1 2450835 R 316275 CDS YP_002263639.1 209695709 6988311 complement(2452835..2453275) 1 NC_011312.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome C biogenesis protein CcmE 2453275 ccmE 6988311 ccmE Aliivibrio salmonicida LFI1238 cytochrome C biogenesis protein CcmE YP_002263639.1 2452835 R 316275 CDS YP_002263640.1 209695710 6988309 complement(2453272..2453478) 1 NC_011312.1 cytochrome C biogenesis protein CcmD 2453478 ccmD 6988309 ccmD Aliivibrio salmonicida LFI1238 cytochrome C biogenesis protein CcmD YP_002263640.1 2453272 R 316275 CDS YP_002263641.1 209695711 6988308 complement(2453502..2454254) 1 NC_011312.1 Expression may be regulated by Fur; cytochrome C biogenesis protein CcmC 2454254 ccmC 6988308 ccmC Aliivibrio salmonicida LFI1238 cytochrome C biogenesis protein CcmC YP_002263641.1 2453502 R 316275 CDS YP_002263642.1 209695712 6988307 complement(2454304..2454972) 1 NC_011312.1 cytochrome C biogenesis protein CcmB 2454972 ccmB 6988307 ccmB Aliivibrio salmonicida LFI1238 cytochrome C biogenesis protein CcmB YP_002263642.1 2454304 R 316275 CDS YP_002263643.1 209695713 6988306 complement(2454976..2455590) 1 NC_011312.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2455590 ccmA 6988306 ccmA Aliivibrio salmonicida LFI1238 cytochrome c biogenesis protein CcmA YP_002263643.1 2454976 R 316275 CDS YP_002263644.1 209695714 6988305 complement(2455861..2456322) 1 NC_011312.1 hypothetical protein 2456322 6988305 VSAL_I2282 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263644.1 2455861 R 316275 CDS YP_002263645.1 209695715 6987696 complement(2456322..2456816) 1 NC_011312.1 chemotaxis protein CheW 2456816 cheW 6987696 cheW Aliivibrio salmonicida LFI1238 chemotaxis protein CheW YP_002263645.1 2456322 R 316275 CDS YP_002263646.1 209695716 6988322 complement(2456845..2457936) 1 NC_011312.1 cheW-like protein 2457936 6988322 VSAL_I2284 Aliivibrio salmonicida LFI1238 cheW-like protein YP_002263646.1 2456845 R 316275 CDS YP_002263647.1 209695717 6987697 complement(2457936..2458703) 1 NC_011312.1 Similar to Bacillus subtilis Sporulation initiation inhibitor protein soj UniProt:P37522 (253 aa) fasta scores: E()=3.6e-25, 36.179% id in 246 aa; chromosome segregation protein 2458703 6987697 VSAL_I2285 Aliivibrio salmonicida LFI1238 chromosome segregation protein YP_002263647.1 2457936 R 316275 CDS YP_002263648.1 209695718 6987698 complement(2458713..2459855) 1 NC_011312.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 2459855 cheB 6987698 cheB Aliivibrio salmonicida LFI1238 chemotaxis-specific methylesterase YP_002263648.1 2458713 R 316275 CDS YP_002263649.1 209695719 6988319 complement(2459871..2462042) 1 NC_011312.1 chemotaxis protein CheA 2462042 cheA 6988319 cheA Aliivibrio salmonicida LFI1238 chemotaxis protein CheA YP_002263649.1 2459871 R 316275 CDS YP_002263650.1 209695720 6988318 complement(2462052..2462771) 1 NC_011312.1 chemotaxis protein CheZ 2462771 cheZ 6988318 cheZ Aliivibrio salmonicida LFI1238 chemotaxis protein CheZ YP_002263650.1 2462052 R 316275 CDS YP_002263651.1 209695721 6988324 complement(2462804..2463172) 1 NC_011312.1 chemotaxis protein CheY 2463172 cheY 6988324 cheY Aliivibrio salmonicida LFI1238 chemotaxis protein CheY YP_002263651.1 2462804 R 316275 CDS YP_002263652.1 209695722 6988323 complement(2463223..2463954) 1 NC_011312.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 2463954 fliA 6988323 fliA Aliivibrio salmonicida LFI1238 flagellar biosynthesis sigma factor YP_002263652.1 2463223 R 316275 CDS YP_002263653.1 209695723 6988534 complement(2463947..2464837) 1 NC_011312.1 flagellar biosynthesis protein FlhG (flagellar number regulator) 2464837 flhG 6988534 flhG Aliivibrio salmonicida LFI1238 flagellar biosynthesis protein FlhG (flagellar number regulator) YP_002263653.1 2463947 R 316275 CDS YP_002263654.1 209695724 6988533 complement(2464834..2466288) 1 NC_011312.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 2466288 flhF 6988533 flhF Aliivibrio salmonicida LFI1238 flagellar biosynthesis regulator FlhF YP_002263654.1 2464834 R 316275 CDS YP_002263655.1 209695725 6988532 complement(2466352..2468445) 1 NC_011312.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2468445 flhA 6988532 flhA Aliivibrio salmonicida LFI1238 flagellar biosynthesis protein FlhA YP_002263655.1 2466352 R 316275 CDS YP_002263656.1 209695726 6988530 2468734..2469408 1 NC_011312.1 type IV pilus assembly (PilZ) protein 2469408 6988530 VSAL_I2294 Aliivibrio salmonicida LFI1238 type IV pilus assembly (PilZ) protein YP_002263656.1 2468734 D 316275 CDS YP_002263657.1 209695727 6987699 complement(2469423..2470553) 1 NC_011312.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2470553 flhB 6987699 flhB Aliivibrio salmonicida LFI1238 flagellar biosynthesis protein FlhB YP_002263657.1 2469423 R 316275 CDS YP_002263658.1 209695728 6988531 complement(2470584..2471366) 1 NC_011312.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2471366 fliR 6988531 fliR Aliivibrio salmonicida LFI1238 flagellar biosynthesis protein FliR YP_002263658.1 2470584 R 316275 CDS YP_002263659.1 209695729 6988549 complement(2471429..2471698) 1 NC_011312.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2471698 fliQ 6988549 fliQ Aliivibrio salmonicida LFI1238 flagellar biosynthesis protein FliQ YP_002263659.1 2471429 R 316275 CDS YP_002263660.1 209695730 6988548 complement(2471708..2472577) 1 NC_011312.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2472577 fliP 6988548 fliP Aliivibrio salmonicida LFI1238 flagellar biosynthesis protein FliP YP_002263660.1 2471708 R 316275 CDS YP_002263661.1 209695731 6988547 complement(2472564..2472953) 1 NC_011312.1 polar flagellar assembly protein FliO 2472953 fliO 6988547 fliO Aliivibrio salmonicida LFI1238 polar flagellar assembly protein FliO YP_002263661.1 2472564 R 316275 CDS YP_002263662.1 209695732 6988546 complement(2472985..2473368) 1 NC_011312.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 2473368 fliN 6988546 fliN Aliivibrio salmonicida LFI1238 flagellar motor switch protein YP_002263662.1 2472985 R 316275 CDS YP_002263663.1 209695733 6988545 complement(2473391..2474422) 1 NC_011312.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2474422 fliM 6988545 fliM Aliivibrio salmonicida LFI1238 flagellar motor switch protein FliM YP_002263663.1 2473391 R 316275 CDS YP_002263664.1 209695734 6988544 complement(2474430..2474915) 1 NC_011312.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2474915 fliL 6988544 fliL Aliivibrio salmonicida LFI1238 flagellar basal body-associated protein FliL YP_002263664.1 2474430 R 316275 CDS YP_002263665.1 209695735 6988543 complement(2474973..2476196) 1 NC_011312.1 Similar to C-terminal part of Vibrio parahaemolyticus Polar flagellar hook-length control protein FliK UniProt:Q9Z6G3 (643 aa) fasta scores: E()=2.7e-22, 51.381% id in 181 aa; polar flagellar hook-length control protein FliK 2476196 fliK 6988543 fliK Aliivibrio salmonicida LFI1238 polar flagellar hook-length control protein FliK YP_002263665.1 2474973 R 316275 CDS YP_002263666.1 209695736 6988542 complement(2476388..2476825) 1 NC_011312.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 2476825 fliJ 6988542 fliJ Aliivibrio salmonicida LFI1238 flagellar biosynthesis chaperone YP_002263666.1 2476388 R 316275 CDS YP_002263667.1 209695737 6988541 complement(2476882..2478201) 1 NC_011312.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2478201 fliI 6988541 fliI Aliivibrio salmonicida LFI1238 flagellum-specific ATP synthase YP_002263667.1 2476882 R 316275 CDS YP_002263668.1 209695738 6988540 complement(2478202..2478999) 1 NC_011312.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2478999 fliH 6988540 fliH Aliivibrio salmonicida LFI1238 flagellar assembly protein H YP_002263668.1 2478202 R 316275 CDS YP_002263669.1 209695739 6988539 complement(2479133..2480185) 1 NC_011312.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2480185 fliG 6988539 fliG Aliivibrio salmonicida LFI1238 flagellar motor switch protein G YP_002263669.1 2479133 R 316275 CDS YP_002263670.1 209695740 6988537 complement(2481932..2482243) 1 NC_011312.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 2482243 fliE 6988537 fliE Aliivibrio salmonicida LFI1238 flagellar hook-basal body protein FliE YP_002263670.1 2481932 R 316275 CDS YP_002263671.1 209695741 6988536 complement(2482344..2483780) 1 NC_011312.1 sigma-54 dependent response regulator 2483780 flaM 6988536 flaM Aliivibrio salmonicida LFI1238 sigma-54 dependent response regulator YP_002263671.1 2482344 R 316275 CDS YP_002263672.1 209695742 6988513 complement(2483783..2484826) 1 NC_011312.1 histidine kinase 2484826 flaL 6988513 flaL Aliivibrio salmonicida LFI1238 histidine kinase YP_002263672.1 2483783 R 316275 CDS YP_002263673.1 209695743 6988512 complement(2484953..2486434) 1 NC_011312.1 sigma 54 dependent transcription regulator 2486434 flaK 6988512 flaK Aliivibrio salmonicida LFI1238 sigma 54 dependent transcription regulator YP_002263673.1 2484953 R 316275 CDS YP_002263674.1 209695744 6988511 complement(2486631..2487041) 1 NC_011312.1 flagellin specific chaperone; flagellar protein FliS 2487041 fliS 6988511 fliS Aliivibrio salmonicida LFI1238 flagellar protein FliS YP_002263674.1 2486631 R 316275 CDS YP_002263675.1 209695745 6988510 complement(2487057..2487347) 1 NC_011312.1 polar flagellar protein FlaI 2487347 flaI 6988510 flaI Aliivibrio salmonicida LFI1238 polar flagellar protein FlaI YP_002263675.1 2487057 R 316275 CDS YP_002263676.1 209695746 6988509 complement(2487381..2489321) 1 NC_011312.1 involved in flagellin assembly; flagellar capping protein 2489321 fliD 6988509 fliD Aliivibrio salmonicida LFI1238 flagellar capping protein YP_002263676.1 2487381 R 316275 CDS YP_002263677.1 209695747 6988508 complement(2489892..2491028) 1 NC_011312.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 2491028 flaE 6988508 flaE Aliivibrio salmonicida LFI1238 flagellin YP_002263677.1 2489892 R 316275 CDS YP_002263678.1 209695748 6988506 complement(2491276..2492403) 1 NC_011312.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 2492403 flaD 6988506 flaD Aliivibrio salmonicida LFI1238 flagellin YP_002263678.1 2491276 R 316275 CDS YP_002263679.1 209695749 6988505 complement(2492863..2494071) 1 NC_011312.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 2494071 flaC 6988505 flaC Aliivibrio salmonicida LFI1238 flagellin YP_002263679.1 2492863 R 316275 CDS YP_002263680.1 209695750 6987702 2496656..2497537 1 NC_011312.1 transposase 2497537 6987702 VSAL_I2323 Aliivibrio salmonicida LFI1238 transposase YP_002263680.1 2496656 D 316275 CDS YP_002263681.1 209695751 6987703 complement(2498240..2498554) 1 NC_011312.1 transposase 2498554 6987703 VSAL_I2324 Aliivibrio salmonicida LFI1238 transposase YP_002263681.1 2498240 R 316275 CDS YP_002263682.1 209695752 6987704 complement(2498727..2499860) 1 NC_011312.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 2499860 flaB 6987704 flaB Aliivibrio salmonicida LFI1238 flagellin YP_002263682.1 2498727 R 316275 CDS YP_002263683.1 209695753 6988503 complement(2499918..2500295) 1 NC_011312.1 hypothetical protein 2500295 6988503 VSAL_I2326 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263683.1 2499918 R 316275 CDS YP_002263684.1 209695754 6987705 complement(2500546..2501685) 1 NC_011312.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 2501685 flaA 6987705 flaA Aliivibrio salmonicida LFI1238 flagellin YP_002263684.1 2500546 R 316275 CDS YP_002263685.1 209695755 6988502 complement(2502247..2503440) 1 NC_011312.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 2503440 flgL 6988502 flgL Aliivibrio salmonicida LFI1238 flagellar hook-associated protein FlgL YP_002263685.1 2502247 R 316275 CDS YP_002263686.1 209695756 6988526 complement(2503457..2505337) 1 NC_011312.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 2505337 flgK 6988526 flgK Aliivibrio salmonicida LFI1238 flagellar hook-associated protein FlgK YP_002263686.1 2503457 R 316275 CDS YP_002263687.1 209695757 6988527 complement(2505589..2506587) 1 NC_011312.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 2506587 flgJ 6988527 flgJ Aliivibrio salmonicida LFI1238 flagellar rod assembly protein/muramidase FlgJ YP_002263687.1 2505589 R 316275 CDS YP_002263688.1 209695758 6988525 complement(2506739..2507860) 1 NC_011312.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 2507860 flgI 6988525 flgI Aliivibrio salmonicida LFI1238 flagellar basal body P-ring protein YP_002263688.1 2506739 R 316275 CDS YP_002263689.1 209695759 6988524 complement(2507863..2508648) 1 NC_011312.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 2508648 flgH 6988524 flgH Aliivibrio salmonicida LFI1238 flagellar basal body L-ring protein YP_002263689.1 2507863 R 316275 CDS YP_002263690.1 209695760 6988523 complement(2508661..2509449) 1 NC_011312.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 2509449 flgG 6988523 flgG Aliivibrio salmonicida LFI1238 flagellar basal body rod protein FlgG YP_002263690.1 2508661 R 316275 CDS YP_002263691.1 209695761 6988522 complement(2509504..2510229) 1 NC_011312.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 2510229 flgF 6988522 flgF Aliivibrio salmonicida LFI1238 flagellar basal body rod protein FlgF YP_002263691.1 2509504 R 316275 CDS YP_002263692.1 209695762 6988521 complement(2510467..2511765) 1 NC_011312.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 2511765 flgE 6988521 flgE Aliivibrio salmonicida LFI1238 flagellar hook protein FlgE YP_002263692.1 2510467 R 316275 CDS YP_002263693.1 209695763 6988520 complement(2511930..2512640) 1 NC_011312.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 2512640 flgD 6988520 flgD Aliivibrio salmonicida LFI1238 flagellar basal body rod modification protein YP_002263693.1 2511930 R 316275 CDS YP_002263694.1 209695764 6988519 complement(2512656..2513072) 1 NC_011312.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 2513072 flgC 6988519 flgC Aliivibrio salmonicida LFI1238 flagellar basal body rod protein FlgC YP_002263694.1 2512656 R 316275 CDS YP_002263695.1 209695765 6988518 complement(2513075..2513470) 1 NC_011312.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 2513470 flgB 6988518 flgB Aliivibrio salmonicida LFI1238 flagellar basal body rod protein FlgB YP_002263695.1 2513075 R 316275 CDS YP_002263696.1 209695766 6988517 complement(2513665..2514492) 1 NC_011312.1 chemotaxis protein methyltransferase CheR 2514492 cheR 6988517 cheR Aliivibrio salmonicida LFI1238 chemotaxis protein methyltransferase CheR YP_002263696.1 2513665 R 316275 CDS YP_002263697.1 209695767 6988320 complement(2514564..2515484) 1 NC_011312.1 chemotaxis protein CheV 2515484 cheV 6988320 cheV Aliivibrio salmonicida LFI1238 chemotaxis protein CheV YP_002263697.1 2514564 R 316275 CDS YP_002263698.1 209695768 6988321 2515559..2516305 1 NC_011312.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 2516305 flgA 6988321 flgA Aliivibrio salmonicida LFI1238 flagellar basal body P-ring biosynthesis protein FlgA YP_002263698.1 2515559 D 316275 CDS YP_002263699.1 209695769 6988516 2516525..2516836 1 NC_011312.1 negative regulator of flagellin synthesis FlgM, anti-sigma28 factor 2516836 flgM 6988516 flgM Aliivibrio salmonicida LFI1238 negative regulator of flagellin synthesis FlgM, anti-sigma28 factor YP_002263699.1 2516525 D 316275 CDS YP_002263700.1 209695770 6988528 2516889..2517317 1 NC_011312.1 polar flagellar FlgN, chaperone 2517317 flgN 6988528 flgN Aliivibrio salmonicida LFI1238 polar flagellar FlgN, chaperone YP_002263700.1 2516889 D 316275 CDS YP_002263701.1 209695771 6988529 complement(2517869..2518303) 1 NC_011312.1 lipoprotein 2518303 6988529 VSAL_I2344 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263701.1 2517869 R 316275 CDS YP_002263702.1 209695772 6987706 complement(2518312..2518947) 1 NC_011312.1 hypothetical protein 2518947 6987706 VSAL_I2345 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263702.1 2518312 R 316275 CDS YP_002263703.1 209695773 6987707 2519120..2520256 1 NC_011312.1 hypothetical protein 2520256 6987707 VSAL_I2346 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263703.1 2519120 D 316275 CDS YP_002263704.1 209695774 6987708 2520393..2521541 1 NC_011312.1 hypothetical protein 2521541 6987708 VSAL_I2347 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263704.1 2520393 D 316275 CDS YP_002263705.1 209695775 6987709 2521547..2522329 1 NC_011312.1 membrane associated GGDEF protein 2522329 6987709 VSAL_I2348 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002263705.1 2521547 D 316275 CDS YP_002263706.1 209695776 6987710 2522480..2522656 1 NC_011312.1 hypothetical protein 2522656 6987710 VSAL_I2349 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263706.1 2522480 D 316275 CDS YP_002263707.1 209695777 6987711 complement(2522708..2524132) 1 NC_011312.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2524132 gltX 6987711 gltX Aliivibrio salmonicida LFI1238 glutamyl-tRNA synthetase YP_002263707.1 2522708 R 316275 CDS YP_002263708.1 209695778 6988607 complement(2524318..2525109) 1 NC_011312.1 lipoprotein 2525109 6988607 VSAL_I2351 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263708.1 2524318 R 316275 CDS YP_002263709.1 209695779 6987712 complement(2526803..2528812) 1 NC_011312.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2528812 ligA 6987712 ligA Aliivibrio salmonicida LFI1238 NAD-dependent DNA ligase LigA YP_002263709.1 2526803 R 316275 CDS YP_002263710.1 209695780 6987713 complement(2528903..2529829) 1 NC_011312.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 2529829 6987713 VSAL_I2354 Aliivibrio salmonicida LFI1238 cell division protein ZipA YP_002263710.1 2528903 R 316275 CDS YP_002263711.1 209695781 6987714 2530101..2530853 1 NC_011312.1 role in sulfur assimilation; sulfate transport protein CysZ 2530853 cysZ 6987714 cysZ Aliivibrio salmonicida LFI1238 sulfate transport protein CysZ YP_002263711.1 2530101 D 316275 CDS YP_002263712.1 209695782 6988383 2531018..2531986 1 NC_011312.1 cysteine synthase A 2531986 cysK 6988383 cysK Aliivibrio salmonicida LFI1238 cysteine synthase A YP_002263712.1 2531018 D 316275 CDS YP_002263713.1 209695783 6988379 2532306..2532563 1 NC_011312.1 phosphocarrier protein HPr 2532563 ptsH 6988379 ptsH Aliivibrio salmonicida LFI1238 phosphocarrier protein HPr YP_002263713.1 2532306 D 316275 CDS YP_002263714.1 209695784 6989029 2532621..2534345 1 NC_011312.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 2534345 ptsI 6989029 ptsI Aliivibrio salmonicida LFI1238 phosphoenolpyruvate-protein phosphotransferase YP_002263714.1 2532621 D 316275 CDS YP_002263715.1 209695785 6989030 2534422..2534931 1 NC_011312.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2534931 crr 6989030 crr Aliivibrio salmonicida LFI1238 PTS system glucose-specific transporter YP_002263715.1 2534422 D 316275 CDS YP_002263716.1 209695786 6988350 complement(2535025..2535930) 1 NC_011312.1 Dyp-type peroxidase 2535930 6988350 VSAL_I2360 Aliivibrio salmonicida LFI1238 Dyp-type peroxidase YP_002263716.1 2535025 R 316275 CDS YP_002263717.1 209695787 6987715 complement(2536014..2536403) 1 NC_011312.1 hypothetical protein 2536403 6987715 VSAL_I2361 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263717.1 2536014 R 316275 CDS YP_002263718.1 209695788 6987716 complement(2536415..2536870) 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein YfeZ UniProt:P76538 (149 aa) fasta scores: E()=5.3e-09, 33.333% id in 141 aa; hypothetical protein 2536870 6987716 VSAL_I2362 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263718.1 2536415 R 316275 CDS YP_002263719.1 209695789 6987717 2537072..2537428 1 NC_011312.1 membrane protein 2537428 6987717 VSAL_I2363 Aliivibrio salmonicida LFI1238 membrane protein YP_002263719.1 2537072 D 316275 CDS YP_002263720.1 209695790 6987718 complement(2537639..2538214) 1 NC_011312.1 cytochrome C protein NapC 2538214 napC 6987718 napC Aliivibrio salmonicida LFI1238 cytochrome C protein NapC YP_002263720.1 2537639 R 316275 CDS YP_002263721.1 209695791 6988883 complement(2538247..2538720) 1 NC_011312.1 cytochrome C protein NapB precursor 2538720 napB 6988883 napB Aliivibrio salmonicida LFI1238 cytochrome C protein NapB precursor YP_002263721.1 2538247 R 316275 CDS YP_002263722.1 209695792 6988881 complement(2541276..2541560) 1 NC_011312.1 NapD protein 2541560 6988881 VSAL_I2367 Aliivibrio salmonicida LFI1238 NapD protein YP_002263722.1 2541276 R 316275 CDS YP_002263723.1 209695793 6987719 complement(2541560..2542078) 1 NC_011312.1 ferredoxin-type protein NapF 2542078 6987719 VSAL_I2368 Aliivibrio salmonicida LFI1238 ferredoxin-type protein NapF YP_002263723.1 2541560 R 316275 CDS YP_002263724.1 209695794 6987720 2542267..2543958 1 NC_011312.1 nitrate/nitrite sensor protein NarQ 2543958 narQ 6987720 narQ Aliivibrio salmonicida LFI1238 nitrate/nitrite sensor protein NarQ YP_002263724.1 2542267 D 316275 CDS YP_002263725.1 209695795 6988885 2543982..2544593 1 NC_011312.1 nitrate/nitrite response regulator protein NarP 2544593 narP 6988885 narP Aliivibrio salmonicida LFI1238 nitrate/nitrite response regulator protein NarP YP_002263725.1 2543982 D 316275 CDS YP_002263726.1 209695796 6988884 2544595..2544930 1 NC_011312.1 lipoprotein 2544930 6988884 VSAL_I2371 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263726.1 2544595 D 316275 CDS YP_002263727.1 209695797 6987721 complement(2545014..2545295) 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 2545295 6987721 VSAL_I2372 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263727.1 2545014 R 316275 CDS YP_002263728.1 209695798 6987722 complement(2545461..2545745) 1 NC_011312.1 Expression may be stress-induced; hypothetical protein 2545745 6987722 VSAL_I2373 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263728.1 2545461 R 316275 CDS YP_002263729.1 209695799 6987723 2545924..2546226 1 NC_011312.1 arsenate reductase 2546226 6987723 VSAL_I2374 Aliivibrio salmonicida LFI1238 arsenate reductase YP_002263729.1 2545924 D 316275 CDS YP_002263730.1 209695800 6987724 2546317..2547450 1 NC_011312.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2547450 dapE 6987724 dapE Aliivibrio salmonicida LFI1238 succinyl-diaminopimelate desuccinylase YP_002263730.1 2546317 D 316275 CDS YP_002263731.1 209695801 6988391 2547510..2548178 1 NC_011312.1 D-alanyl-D-alanine carboxypeptidase 2548178 6988391 VSAL_I2376 Aliivibrio salmonicida LFI1238 D-alanyl-D-alanine carboxypeptidase YP_002263731.1 2547510 D 316275 CDS YP_002263732.1 209695802 6987725 2548181..2548351 1 NC_011312.1 hypothetical protein 2548351 6987725 VSAL_I2377 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263732.1 2548181 D 316275 CDS YP_002263733.1 209695803 6987726 complement(2548424..2549476) 1 NC_011312.1 Similar to Escherichia coli Lipoprotein 34 precursor NlpB UniProt:P0A903 (344 aa) fasta scores: E()=1.6e-33, 33.832% id in 334 aa; lipoprotein 2549476 6987726 VSAL_I2378 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263733.1 2548424 R 316275 CDS YP_002263734.1 209695804 6987727 complement(2549488..2550369) 1 NC_011312.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2550369 dapA 6987727 dapA Aliivibrio salmonicida LFI1238 dihydrodipicolinate synthase YP_002263734.1 2549488 R 316275 CDS YP_002263735.1 209695805 6988388 2550645..2551172 1 NC_011312.1 glycine cleavage system transcriptional repressor (Gcv operon repressor) 2551172 gcvR 6988388 gcvR Aliivibrio salmonicida LFI1238 glycine cleavage system transcriptional repressor (Gcv operon repressor) YP_002263735.1 2550645 D 316275 CDS YP_002263736.1 209695806 6988587 2551200..2551670 1 NC_011312.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2551670 bcp 6988587 bcp Aliivibrio salmonicida LFI1238 thioredoxin-dependent thiol peroxidase YP_002263736.1 2551200 D 316275 CDS YP_002263737.1 209695807 6988287 complement(2551746..2552813) 1 NC_011312.1 membrane protein 2552813 6988287 VSAL_I2382 Aliivibrio salmonicida LFI1238 membrane protein YP_002263737.1 2551746 R 316275 CDS YP_002263738.1 209695808 6987728 complement(2552815..2553042) 1 NC_011312.1 hypothetical protein 2553042 6987728 VSAL_I2383 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263738.1 2552815 R 316275 CDS YP_002263739.1 209695809 6987729 2553230..2554684 1 NC_011312.1 peptidase 2554684 6987729 VSAL_I2384 Aliivibrio salmonicida LFI1238 peptidase YP_002263739.1 2553230 D 316275 CDS YP_002263740.1 209695810 6987730 2554711..2555061 1 NC_011312.1 arsenate reductase 2555061 6987730 VSAL_I2385 Aliivibrio salmonicida LFI1238 arsenate reductase YP_002263740.1 2554711 D 316275 CDS YP_002263741.1 209695811 6987731 2555082..2555522 1 NC_011312.1 hypothetical protein 2555522 6987731 VSAL_I2386 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263741.1 2555082 D 316275 CDS YP_002263742.1 209695812 6987732 complement(2555609..2556805) 1 NC_011312.1 hypothetical protein 2556805 6987732 VSAL_I2387 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263742.1 2555609 R 316275 CDS YP_002263743.1 209695813 6987733 2557012..2558262 1 NC_011312.1 uracil permease 2558262 pyrP 6987733 pyrP Aliivibrio salmonicida LFI1238 uracil permease YP_002263743.1 2557012 D 316275 CDS YP_002263744.1 209695814 6989055 complement(2558416..2559042) 1 NC_011312.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2559042 upp 6989055 upp Aliivibrio salmonicida LFI1238 uracil phosphoribosyltransferase YP_002263744.1 2558416 R 316275 CDS YP_002263745.1 209695815 6989358 2559268..2560308 1 NC_011312.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2560308 purM 6989358 purM Aliivibrio salmonicida LFI1238 phosphoribosylaminoimidazole synthetase YP_002263745.1 2559268 D 316275 CDS YP_002263746.1 209695816 6989042 2560436..2561080 1 NC_011312.1 phosphoribosylglycinamide formyltransferase 2561080 purN 6989042 purN Aliivibrio salmonicida LFI1238 phosphoribosylglycinamide formyltransferase YP_002263746.1 2560436 D 316275 CDS YP_002263747.1 209695817 6989043 complement(2561138..2561965) 1 NC_011312.1 amidotransferase 2561965 6989043 VSAL_I2392 Aliivibrio salmonicida LFI1238 amidotransferase YP_002263747.1 2561138 R 316275 CDS YP_002263748.1 209695818 6987734 complement(2562000..2562581) 1 NC_011312.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 2562581 gmhA 6987734 gmhA Aliivibrio salmonicida LFI1238 phosphoheptose isomerase YP_002263748.1 2562000 R 316275 CDS YP_002263749.1 209695819 6988612 2562847..2563728 1 NC_011312.1 transposase 2563728 6988612 VSAL_I2394 Aliivibrio salmonicida LFI1238 transposase YP_002263749.1 2562847 D 316275 CDS YP_002263750.1 209695820 6987735 2563944..2566391 1 NC_011312.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2566391 fadE 6987735 fadE Aliivibrio salmonicida LFI1238 acyl-CoA dehydrogenase YP_002263750.1 2563944 D 316275 CDS YP_002263751.1 209695821 6988475 complement(2566470..2566646) 1 NC_011312.1 hypothetical protein 2566646 6988475 VSAL_I2396 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263751.1 2566470 R 316275 CDS YP_002263752.1 209695822 6987736 complement(2566806..2568068) 1 NC_011312.1 hypothetical protein 2568068 6987736 VSAL_I2397 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263752.1 2566806 R 316275 CDS YP_002263753.1 209695823 6987737 complement(2568079..2568810) 1 NC_011312.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 2568810 dnaQ 6987737 dnaQ Aliivibrio salmonicida LFI1238 DNA polymerase III subunit epsilon YP_002263753.1 2568079 R 316275 CDS YP_002263754.1 209695824 6988420 2568848..2569321 1 NC_011312.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2569321 rnhA 6988420 rnhA Aliivibrio salmonicida LFI1238 ribonuclease H YP_002263754.1 2568848 D 316275 CDS YP_002263755.1 209695825 6989137 complement(2569318..2570061) 1 NC_011312.1 hypothetical protein 2570061 6989137 VSAL_I2400 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263755.1 2569318 R 316275 CDS YP_002263756.1 209695826 6987738 2570113..2570871 1 NC_011312.1 metallo-beta-lactamase 2570871 6987738 VSAL_I2401 Aliivibrio salmonicida LFI1238 metallo-beta-lactamase YP_002263756.1 2570113 D 316275 CDS YP_002263757.1 209695827 6987739 2570958..2572511 1 NC_011312.1 membrane-bound lytic murein transglycosylase D 2572511 mltD 6987739 mltD Aliivibrio salmonicida LFI1238 membrane-bound lytic murein transglycosylase D YP_002263757.1 2570958 D 316275 CDS YP_002263758.1 209695828 6988812 complement(2572870..2574357) 1 NC_011312.1 transposase 2574357 6988812 VSAL_I2404 Aliivibrio salmonicida LFI1238 transposase YP_002263758.1 2572870 R 316275 CDS YP_002263759.1 209695829 6987740 complement(2574429..2574776) 1 NC_011312.1 transposase 2574776 6987740 VSAL_I2405 Aliivibrio salmonicida LFI1238 transposase YP_002263759.1 2574429 R 316275 CDS YP_002263760.1 209695830 6987741 complement(2574773..2575087) 1 NC_011312.1 transposase 2575087 6987741 VSAL_I2406 Aliivibrio salmonicida LFI1238 transposase YP_002263760.1 2574773 R 316275 CDS YP_002263761.1 209695831 6987742 complement(2575504..2576358) 1 NC_011312.1 hypothetical protein 2576358 6987742 VSAL_I2407 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263761.1 2575504 R 316275 CDS YP_002263762.1 209695832 6987743 complement(2576424..2576762) 1 NC_011312.1 nitrogen regulatory protein P-II 2576762 glnB 6987743 glnB Aliivibrio salmonicida LFI1238 nitrogen regulatory protein P-II YP_002263762.1 2576424 R 316275 CDS YP_002263763.1 209695833 6988594 complement(2576855..2577166) 1 NC_011312.1 cytochrome c-552 2577166 6988594 VSAL_I2409 Aliivibrio salmonicida LFI1238 cytochrome c-552 YP_002263763.1 2576855 R 316275 CDS YP_002263764.1 209695834 6987744 complement(2577219..2578550) 1 NC_011312.1 tRNA(Ile)-lysidine synthase 2578550 tilS 6987744 tilS Aliivibrio salmonicida LFI1238 tRNA(Ile)-lysidine synthase YP_002263764.1 2577219 R 316275 CDS YP_002263765.1 209695835 6989298 complement(2578658..2579617) 1 NC_011312.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 2579617 accA 6989298 accA Aliivibrio salmonicida LFI1238 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_002263765.1 2578658 R 316275 CDS YP_002263766.1 209695836 6988209 complement(2579669..2583148) 1 NC_011312.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 2583148 dnaE 6988209 dnaE Aliivibrio salmonicida LFI1238 DNA polymerase III subunit alpha YP_002263766.1 2579669 R 316275 CDS YP_002263767.1 209695837 6988413 complement(2583148..2583771) 1 NC_011312.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2583771 rnhB 6988413 rnhB Aliivibrio salmonicida LFI1238 ribonuclease HII YP_002263767.1 2583148 R 316275 CDS YP_002263768.1 209695838 6989138 complement(2583776..2584927) 1 NC_011312.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 2584927 lpxB 6989138 lpxB Aliivibrio salmonicida LFI1238 lipid-A-disaccharide synthase YP_002263768.1 2583776 R 316275 CDS YP_002263769.1 209695839 6988758 complement(2585004..2585792) 1 NC_011312.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2585792 lpxA 6988758 lpxA Aliivibrio salmonicida LFI1238 UDP-N-acetylglucosamine acyltransferase YP_002263769.1 2585004 R 316275 CDS YP_002263770.1 209695840 6988757 complement(2585795..2586274) 1 NC_011312.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 2586274 fabZ 6988757 fabZ Aliivibrio salmonicida LFI1238 (3R)-hydroxymyristoyl-ACP dehydratase YP_002263770.1 2585795 R 316275 CDS YP_002263771.1 209695841 6988471 complement(2586375..2587394) 1 NC_011312.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2587394 lpxD 6988471 lpxD Aliivibrio salmonicida LFI1238 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_002263771.1 2586375 R 316275 CDS YP_002263772.1 209695842 6988760 complement(2587403..2587918) 1 NC_011312.1 Similar to Yersinia pestis Chaperone protein skp precursor UniProt:P58607 (165 aa) fasta scores: E()=2e-16, 39.053% id in 169 aa; outer membrane protein 2587918 6988760 VSAL_I2418 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002263772.1 2587403 R 316275 CDS YP_002263773.1 209695843 6987745 complement(2587994..2590414) 1 NC_011312.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 2590414 yaeT 6987745 yaeT Aliivibrio salmonicida LFI1238 outer membrane protein assembly factor YaeT YP_002263773.1 2587994 R 316275 CDS YP_002263774.1 209695844 6989423 complement(2590443..2591801) 1 NC_011312.1 protease EcfE 2591801 ecfE 6989423 ecfE Aliivibrio salmonicida LFI1238 protease EcfE YP_002263774.1 2590443 R 316275 CDS YP_002263775.1 209695845 6988436 complement(2591804..2593006) 1 NC_011312.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2593006 dxr 6988436 dxr Aliivibrio salmonicida LFI1238 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002263775.1 2591804 R 316275 CDS YP_002263776.1 209695846 6988434 complement(2593115..2593954) 1 NC_011312.1 phosphatidate cytidylyltransferase 2593954 cdsA 6988434 cdsA Aliivibrio salmonicida LFI1238 phosphatidate cytidylyltransferase YP_002263776.1 2593115 R 316275 CDS YP_002263777.1 209695847 6988314 complement(2593958..2594731) 1 NC_011312.1 undecaprenyl pyrophosphate synthetase 2594731 uppS 6988314 uppS Aliivibrio salmonicida LFI1238 undecaprenyl pyrophosphate synthetase YP_002263777.1 2593958 R 316275 CDS YP_002263778.1 209695848 6989359 complement(2594855..2595412) 1 NC_011312.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2595412 frr 6989359 frr Aliivibrio salmonicida LFI1238 ribosome recycling factor YP_002263778.1 2594855 R 316275 CDS YP_002263779.1 209695849 6988564 complement(2595447..2596178) 1 NC_011312.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2596178 pyrH 6988564 pyrH Aliivibrio salmonicida LFI1238 uridylate kinase YP_002263779.1 2595447 R 316275 CDS YP_002263780.1 209695850 6989053 complement(2596349..2597197) 1 NC_011312.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2597197 tsf 6989053 tsf Aliivibrio salmonicida LFI1238 elongation factor Ts YP_002263780.1 2596349 R 316275 CDS YP_002263781.1 209695851 6987746 complement(2597330..2598061) 1 NC_011312.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2598061 rpsB 6987746 rpsB Aliivibrio salmonicida LFI1238 30S ribosomal protein S2 YP_002263781.1 2597330 R 316275 CDS YP_002263782.1 209695852 6989189 2598427..2599254 1 NC_011312.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 2599254 6989189 VSAL_I2428 Aliivibrio salmonicida LFI1238 methionine aminopeptidase YP_002263782.1 2598427 D 316275 CDS YP_002263783.1 209695853 6987747 2599448..2602099 1 NC_011312.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 2602099 glnD 6987747 glnD Aliivibrio salmonicida LFI1238 PII uridylyl-transferase YP_002263783.1 2599448 D 316275 CDS YP_002263784.1 209695854 6988596 2602193..2603074 1 NC_011312.1 transposase 2603074 6988596 VSAL_I2430 Aliivibrio salmonicida LFI1238 transposase YP_002263784.1 2602193 D 316275 CDS YP_002263785.1 209695855 6987748 2603230..2603610 1 NC_011312.1 hypothetical protein 2603610 6987748 VSAL_I2431 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263785.1 2603230 D 316275 CDS YP_002263786.1 209695856 6987749 complement(2603684..2604634) 1 NC_011312.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 2604634 secF 6987749 secF Aliivibrio salmonicida LFI1238 preprotein translocase subunit SecF YP_002263786.1 2603684 R 316275 CDS YP_002263787.1 209695857 6989235 complement(2604648..2606504) 1 NC_011312.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 2606504 secD 6989235 secD Aliivibrio salmonicida LFI1238 preprotein translocase subunit SecD YP_002263787.1 2604648 R 316275 CDS YP_002263788.1 209695858 6989231 complement(2606558..2606890) 1 NC_011312.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 2606890 yajC 6989231 yajC Aliivibrio salmonicida LFI1238 preprotein translocase subunit YajC YP_002263788.1 2606558 R 316275 CDS YP_002263789.1 209695859 6987750 complement(2606984..2608111) 1 NC_011312.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 2608111 tgt 6987750 tgt Aliivibrio salmonicida LFI1238 queuine tRNA-ribosyltransferase YP_002263789.1 2606984 R 316275 CDS YP_002263790.1 209695860 6989280 complement(2608304..2609356) 1 NC_011312.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2609356 queA 6989280 queA Aliivibrio salmonicida LFI1238 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_002263790.1 2608304 R 316275 CDS YP_002263791.1 209695861 6989058 2609599..2610042 1 NC_011312.1 Similar to N-terminal part of Bacillus subtilis Acetoin utilization protein AcuB UniProt:P39066 (214 aa) fasta scores: E()=1.1e-08, 30.986% id in 142 aa; hypothetical protein 2610042 6989058 VSAL_I2437 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263791.1 2609599 D 316275 CDS YP_002263792.1 209695862 6987751 complement(2610139..2611467) 1 NC_011312.1 isocitrate lyase 2611467 aceA 6987751 aceA Aliivibrio salmonicida LFI1238 isocitrate lyase YP_002263792.1 2610139 R 316275 CDS YP_002263793.1 209695863 6988213 complement(2611482..2613086) 1 NC_011312.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 2613086 aceB 6988213 aceB Aliivibrio salmonicida LFI1238 malate synthase YP_002263793.1 2611482 R 316275 CDS YP_002263794.1 209695864 6988214 complement(2613672..2614571) 1 NC_011312.1 Similar to Escherichia coli Hydrogen peroxide-inducible genes activator OxyR UniProt:P0ACQ4 (EMBL:J04553 (305 aa) fasta scores: E()=8.4e-29, 35.959% id in 292 aa; transcriptional regulator, hydrogen peroxide-inducible regulon activator 2614571 6988214 VSAL_I2440 Aliivibrio salmonicida LFI1238 transcriptional regulator, hydrogen peroxide-inducible regulon activator YP_002263794.1 2613672 R 316275 CDS YP_002263795.1 209695865 6987752 2614720..2615328 1 NC_011312.1 peroxidase/antioxidant 2615328 6987752 VSAL_I2441 Aliivibrio salmonicida LFI1238 peroxidase/antioxidant YP_002263795.1 2614720 D 316275 CDS YP_002263796.1 209695866 6987753 2615595..2616338 1 NC_011312.1 copper homeostasis protein CutC 2616338 6987753 VSAL_I2442 Aliivibrio salmonicida LFI1238 copper homeostasis protein CutC YP_002263796.1 2615595 D 316275 CDS YP_002263797.1 209695867 6987754 complement(2616405..2616770) 1 NC_011312.1 hypothetical protein 2616770 6987754 VSAL_I2443 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263797.1 2616405 R 316275 CDS YP_002263798.1 209695868 6987755 complement(2616815..2617444) 1 NC_011312.1 accessory colonization factor precursor AcfA 2617444 6987755 VSAL_I2444 Aliivibrio salmonicida LFI1238 accessory colonization factor precursor AcfA YP_002263798.1 2616815 R 316275 CDS YP_002263799.1 209695869 6987756 2617733..2618659 1 NC_011312.1 Similar to Pseudomonas putida HTH-type transcriptional activator NahR UniProt:P10183 (300 aa) fasta scores: E()=2.9e-13, 27.213% id in 305 aa; LysR family transcriptional regulator 2618659 6987756 VSAL_I2445 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002263799.1 2617733 D 316275 CDS YP_002263800.1 209695870 6987757 2618823..2619452 1 NC_011312.1 hypothetical protein 2619452 6987757 VSAL_I2446 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263800.1 2618823 D 316275 CDS YP_002263801.1 209695871 6987758 2620160..2620582 1 NC_011312.1 transposase 2620582 6987758 VSAL_I2448 Aliivibrio salmonicida LFI1238 transposase YP_002263801.1 2620160 D 316275 CDS YP_002263802.1 209695872 6987759 2620600..2621166 1 NC_011312.1 transposase 2621166 6987759 VSAL_I2449 Aliivibrio salmonicida LFI1238 transposase YP_002263802.1 2620600 D 316275 CDS YP_002263803.1 209695873 6987760 complement(2621279..2621854) 1 NC_011312.1 hypothetical protein 2621854 6987760 VSAL_I2450 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263803.1 2621279 R 316275 CDS YP_002263804.1 209695874 6987761 complement(2622007..2622705) 1 NC_011312.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 2622705 phoU 6987761 phoU Aliivibrio salmonicida LFI1238 transcriptional regulator PhoU YP_002263804.1 2622007 R 316275 CDS YP_002263805.1 209695875 6988974 complement(2622741..2623559) 1 NC_011312.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 2623559 pstB 6988974 pstB Aliivibrio salmonicida LFI1238 phosphate transporter ATP-binding protein YP_002263805.1 2622741 R 316275 CDS YP_002263806.1 209695876 6989023 complement(2623564..2625093) 1 NC_011312.1 phosphate import protein, transmembrane component PstA 2625093 pstA 6989023 pstA Aliivibrio salmonicida LFI1238 phosphate import protein, transmembrane component PstA YP_002263806.1 2623564 R 316275 CDS YP_002263807.1 209695877 6989021 complement(2625104..2627311) 1 NC_011312.1 phosphate import protein, transmembrane component PstC 2627311 pstC 6989021 pstC Aliivibrio salmonicida LFI1238 phosphate import protein, transmembrane component PstC YP_002263807.1 2625104 R 316275 CDS YP_002263808.1 209695878 6989025 complement(2627406..2628395) 1 NC_011312.1 hypothetical protein 2628395 6989025 VSAL_I2455 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263808.1 2627406 R 316275 CDS YP_002263809.1 209695879 6987762 complement(2628402..2629700) 1 NC_011312.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 2629700 phoR 6987762 phoR Aliivibrio salmonicida LFI1238 phosphate regulon sensor protein YP_002263809.1 2628402 R 316275 CDS YP_002263810.1 209695880 6988973 complement(2629731..2630423) 1 NC_011312.1 phosphate regulon transcriptional regulator PhoB 2630423 phoB 6988973 phoB Aliivibrio salmonicida LFI1238 phosphate regulon transcriptional regulator PhoB YP_002263810.1 2629731 R 316275 CDS YP_002263811.1 209695881 6988972 2630634..2631548 1 NC_011312.1 Required for efficient pilin antigenic variation; recombination associated protein 2631548 rdgC 6988972 rdgC Aliivibrio salmonicida LFI1238 recombination associated protein YP_002263811.1 2630634 D 316275 CDS YP_002263812.1 209695882 6989073 2632016..2632330 1 NC_011312.1 transposase 2632330 6989073 VSAL_I2460 Aliivibrio salmonicida LFI1238 transposase YP_002263812.1 2632016 D 316275 CDS YP_002263813.1 209695883 6987763 2632327..2632674 1 NC_011312.1 transposase 2632674 6987763 VSAL_I2461 Aliivibrio salmonicida LFI1238 transposase YP_002263813.1 2632327 D 316275 CDS YP_002263814.1 209695884 6987765 2635822..2637117 1 NC_011312.1 Similar to Acinetobacter sp. Cis,cis-muconate transport protein MucK UniProt:P94131 (413 aa) fasta scores: E()=2.7e-07, 23.636% id in 385 aa; MFS transporter 2637117 6987765 VSAL_I2463 Aliivibrio salmonicida LFI1238 MFS transporter YP_002263814.1 2635822 D 316275 CDS YP_002263815.1 209695885 6987766 2637189..2638205 1 NC_011312.1 hypothetical protein 2638205 6987766 VSAL_I2464 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263815.1 2637189 D 316275 CDS YP_002263816.1 209695886 6987767 2638373..2639383 1 NC_011312.1 Similar to Bacillus subtilis Ribose operon repressor RbsR UniProt:P36944 (326 aa) fasta scores: E()=4.1e-23, 33.333% id in 333 aa; LacI family transcriptional regulator 2639383 6987767 VSAL_I2465 Aliivibrio salmonicida LFI1238 LacI family transcriptional regulator YP_002263816.1 2638373 D 316275 CDS YP_002263817.1 209695887 6987768 2639534..2640922 1 NC_011312.1 peptidase 2640922 6987768 VSAL_I2466 Aliivibrio salmonicida LFI1238 peptidase YP_002263817.1 2639534 D 316275 CDS YP_002263818.1 209695888 6987769 2640926..2641180 1 NC_011312.1 ferredoxin 2641180 fdx 6987769 fdx Aliivibrio salmonicida LFI1238 ferredoxin YP_002263818.1 2640926 D 316275 CDS YP_002263819.1 209695889 6987770 2642123..2643004 1 NC_011312.1 transposase 2643004 6987770 VSAL_I2469 Aliivibrio salmonicida LFI1238 transposase YP_002263819.1 2642123 D 316275 CDS YP_002263820.1 209695890 6987771 complement(2643549..2644691) 1 NC_011312.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 2644691 dnaJ 6987771 dnaJ Aliivibrio salmonicida LFI1238 chaperone protein DnaJ YP_002263820.1 2643549 R 316275 CDS YP_002263821.1 209695891 6988416 complement(2645010..2646911) 1 NC_011312.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2646911 dnaK 6988416 dnaK Aliivibrio salmonicida LFI1238 molecular chaperone DnaK YP_002263821.1 2645010 R 316275 CDS YP_002263822.1 209695892 6988418 complement(2647163..2648110) 1 NC_011312.1 hypothetical protein 2648110 6988418 VSAL_I2472 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263822.1 2647163 R 316275 CDS YP_002263823.1 209695893 6987772 complement(2648330..2648914) 1 NC_011312.1 protein GrpE (heat shock protein) 2648914 grpE 6987772 grpE Aliivibrio salmonicida LFI1238 protein GrpE (heat shock protein) YP_002263823.1 2648330 R 316275 CDS YP_002263824.1 209695894 6988627 2649080..2649973 1 NC_011312.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2649973 ppnK 6988627 ppnK Aliivibrio salmonicida LFI1238 inorganic polyphosphate/ATP-NAD kinase YP_002263824.1 2649080 D 316275 CDS YP_002263825.1 209695895 6987773 2650071..2651768 1 NC_011312.1 recombination and repair protein 2651768 recN 6987773 recN Aliivibrio salmonicida LFI1238 recombination and repair protein YP_002263825.1 2650071 D 316275 CDS YP_002263826.1 209695896 6989082 2652019..2652375 1 NC_011312.1 lipoprotein, small protein A 2652375 6989082 VSAL_I2476 Aliivibrio salmonicida LFI1238 lipoprotein, small protein A YP_002263826.1 2652019 D 316275 CDS YP_002263827.1 209695897 6987774 complement(2652463..2652756) 1 NC_011312.1 hypothetical protein 2652756 6987774 VSAL_I2477 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263827.1 2652463 R 316275 CDS YP_002263828.1 209695898 6987775 complement(2652761..2653198) 1 NC_011312.1 hypothetical protein 2653198 6987775 VSAL_I2478 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263828.1 2652761 R 316275 CDS YP_002263829.1 209695899 6987776 2653300..2653785 1 NC_011312.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2653785 smpB 6987776 smpB Aliivibrio salmonicida LFI1238 SsrA-binding protein YP_002263829.1 2653300 D 316275 CDS YP_002263830.1 209695900 6988163 2654415..2655656 1 NC_011312.1 integrase, phage family 2655656 int 6988163 int Aliivibrio salmonicida LFI1238 integrase, phage family YP_002263830.1 2654415 D 316275 CDS YP_002263831.1 209695901 6988720 complement(2655827..2656576) 1 NC_011312.1 phage protein 2656576 6988720 VSAL_I2481 Aliivibrio salmonicida LFI1238 phage protein YP_002263831.1 2655827 R 316275 CDS YP_002263832.1 209695902 6987777 complement(2656578..2659508) 1 NC_011312.1 ABC transporter ATP-binding protein 2659508 6987777 VSAL_I2482 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002263832.1 2656578 R 316275 CDS YP_002263833.1 209695903 6987778 2660814..2661128 1 NC_011312.1 transposase 2661128 6987778 VSAL_I2484 Aliivibrio salmonicida LFI1238 transposase YP_002263833.1 2660814 D 316275 CDS YP_002263834.1 209695904 6987779 2661125..2661472 1 NC_011312.1 transposase 2661472 6987779 VSAL_I2485 Aliivibrio salmonicida LFI1238 transposase YP_002263834.1 2661125 D 316275 CDS YP_002263835.1 209695905 6987780 2661544..2663031 1 NC_011312.1 transposase 2663031 6987780 VSAL_I2486 Aliivibrio salmonicida LFI1238 transposase YP_002263835.1 2661544 D 316275 CDS YP_002263836.1 209695906 6987782 complement(2665710..2666057) 1 NC_011312.1 transposase 2666057 6987782 VSAL_I2488 Aliivibrio salmonicida LFI1238 transposase YP_002263836.1 2665710 R 316275 CDS YP_002263837.1 209695907 6987783 complement(2666054..2666365) 1 NC_011312.1 transposase 2666365 6987783 VSAL_I2489 Aliivibrio salmonicida LFI1238 transposase YP_002263837.1 2666054 R 316275 CDS YP_002263838.1 209695908 6987784 complement(2666559..2667428) 1 NC_011312.1 pyridoxamine kinase 2667428 pdxY 6987784 pdxY Aliivibrio salmonicida LFI1238 pyridoxamine kinase YP_002263838.1 2666559 R 316275 CDS YP_002263839.1 209695909 6988956 complement(2667505..2669643) 1 NC_011312.1 lysine decarboxylase 2669643 cadA 6988956 cadA Aliivibrio salmonicida LFI1238 lysine decarboxylase YP_002263839.1 2667505 R 316275 CDS YP_002263840.1 209695910 6988296 complement(2669762..2671096) 1 NC_011312.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2671096 cadB 6988296 cadB Aliivibrio salmonicida LFI1238 lysine/cadaverine antiporter YP_002263840.1 2669762 R 316275 CDS YP_002263841.1 209695911 6988297 2671757..2673226 1 NC_011312.1 sodium/alanine symporter 2673226 6988297 VSAL_I2493 Aliivibrio salmonicida LFI1238 sodium/alanine symporter YP_002263841.1 2671757 D 316275 CDS YP_002263842.1 209695912 6987785 complement(2673304..2674932) 1 NC_011312.1 regulates the cadBA operon; DNA-binding transcriptional activator CadC 2674932 6987785 VSAL_I2494 Aliivibrio salmonicida LFI1238 DNA-binding transcriptional activator CadC YP_002263842.1 2673304 R 316275 CDS YP_002263843.1 209695913 6987786 2675480..2675896 1 NC_011312.1 hypothetical protein 2675896 6987786 VSAL_I2495 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263843.1 2675480 D 316275 CDS YP_002263844.1 209695914 6987787 complement(2675962..2676399) 1 NC_011312.1 integral membrane protein 2676399 6987787 VSAL_I2496 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002263844.1 2675962 R 316275 CDS YP_002263845.1 209695915 6987788 complement(2676409..2676828) 1 NC_011312.1 integral membrane protein 2676828 6987788 VSAL_I2497 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002263845.1 2676409 R 316275 CDS YP_002263846.1 209695916 6987789 2677139..2678059 1 NC_011312.1 Similar to Yersinia enterocolitica Plasmid pYVe8081 YomA UniProt:Q93KR5 (291 aa) fasta scores: E()=2.3e-35, 44.170% id in 283 aa; integral membrane protein 2678059 6987789 VSAL_I2498 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002263846.1 2677139 D 316275 CDS YP_002263847.1 209695917 6987790 2678218..2679156 1 NC_011312.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 2679156 metA 6987790 metA Aliivibrio salmonicida LFI1238 homoserine O-succinyltransferase YP_002263847.1 2678218 D 316275 CDS YP_002263848.1 209695918 6988787 2679390..2680733 1 NC_011312.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 2680733 dcuB 6988787 dcuB Aliivibrio salmonicida LFI1238 anaerobic C4-dicarboxylate transporter YP_002263848.1 2679390 D 316275 CDS YP_002263849.1 209695919 6988397 complement(2680823..2682037) 1 NC_011312.1 Similar to Escherichia coli Inner membrane transport protein yeiJ UniProt:P33021 (416 aa) fasta scores: E()=2.1e-48, 43.750% id in 416 aa; nucleoside transport protein (nucleoside permease NupC) 2682037 6988397 VSAL_I2501 Aliivibrio salmonicida LFI1238 nucleoside transport protein (nucleoside permease NupC) YP_002263849.1 2680823 R 316275 CDS YP_002263850.1 209695920 6987791 2682466..2683026 1 NC_011312.1 membrane protein 2683026 6987791 VSAL_I2502 Aliivibrio salmonicida LFI1238 membrane protein YP_002263850.1 2682466 D 316275 CDS YP_002263851.1 209695921 6987792 2683155..2684855 1 NC_011312.1 Similar to Serratia marcescens Iron(III)-transport system permease protein SfuB UniProt:P21409 (527 aa) fasta scores: E()=4.8e-05, 23.715% id in 506 aa; ABC transporter permease 2684855 6987792 VSAL_I2503 Aliivibrio salmonicida LFI1238 ABC transporter permease YP_002263851.1 2683155 D 316275 CDS YP_002263852.1 209695922 6987793 2684869..2685462 1 NC_011312.1 ABC transporter ATP-binding protein 2685462 6987793 VSAL_I2504 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002263852.1 2684869 D 316275 CDS YP_002263853.1 209695923 6987794 2685455..2686081 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein YnjF UniProt:P76226 (206 aa) fasta scores: E()=1.5e-40, 58.049% id in 205 aa; phosphatidyltransferase 2686081 6987794 VSAL_I2505 Aliivibrio salmonicida LFI1238 phosphatidyltransferase YP_002263853.1 2685455 D 316275 CDS YP_002263854.1 209695924 6987795 complement(2686176..2687141) 1 NC_011312.1 RNA polymerase sigma subunit RpoS (sigma-38) 2687141 rpoS 6987795 rpoS Aliivibrio salmonicida LFI1238 RNA polymerase sigma subunit RpoS (sigma-38) YP_002263854.1 2686176 R 316275 CDS YP_002263855.1 209695925 6989186 complement(2687197..2688189) 1 NC_011312.1 lipoprotein 2688189 6989186 VSAL_I2507 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263855.1 2687197 R 316275 CDS YP_002263856.1 209695926 6987796 complement(2688196..2688822) 1 NC_011312.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 2688822 pcm 6987796 pcm Aliivibrio salmonicida LFI1238 protein-L-isoaspartate O-methyltransferase YP_002263856.1 2688196 R 316275 CDS YP_002263857.1 209695927 6988950 complement(2688822..2689586) 1 NC_011312.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 2689586 surE 6988950 surE Aliivibrio salmonicida LFI1238 stationary phase survival protein SurE YP_002263857.1 2688822 R 316275 CDS YP_002263858.1 209695928 6989270 complement(2689617..2690663) 1 NC_011312.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 2690663 truD 6989270 truD Aliivibrio salmonicida LFI1238 tRNA pseudouridine synthase D YP_002263858.1 2689617 R 316275 CDS YP_002263859.1 209695929 6989338 complement(2690678..2691157) 1 NC_011312.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2691157 ispF 6989338 ispF Aliivibrio salmonicida LFI1238 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_002263859.1 2690678 R 316275 CDS YP_002263860.1 209695930 6988727 complement(2691154..2691873) 1 NC_011312.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2691873 ispD 6988727 ispD Aliivibrio salmonicida LFI1238 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002263860.1 2691154 R 316275 CDS YP_002263861.1 209695931 6988725 complement(2691877..2692161) 1 NC_011312.1 cell division protein FtsB 2692161 ftsB 6988725 ftsB Aliivibrio salmonicida LFI1238 cell division protein FtsB YP_002263861.1 2691877 R 316275 CDS YP_002263862.1 209695932 6988567 complement(2692343..2693641) 1 NC_011312.1 enolase 2693641 eno 6988567 eno Aliivibrio salmonicida LFI1238 enolase YP_002263862.1 2692343 R 316275 CDS YP_002263863.1 209695933 6988442 complement(2693718..2695358) 1 NC_011312.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2695358 pyrG 6988442 pyrG Aliivibrio salmonicida LFI1238 CTP synthetase YP_002263863.1 2693718 R 316275 CDS YP_002263864.1 209695934 6989052 complement(2695489..2696313) 1 NC_011312.1 hypothetical protein 2696313 6989052 VSAL_I2516 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263864.1 2695489 R 316275 CDS YP_002263865.1 209695935 6987797 complement(2696413..2697570) 1 NC_011312.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 2697570 flaF 6987797 flaF Aliivibrio salmonicida LFI1238 flagellin YP_002263865.1 2696413 R 316275 CDS YP_002263866.1 209695936 6988507 complement(2697759..2699996) 1 NC_011312.1 GTP pyrophosphokinase 2699996 relA 6988507 relA Aliivibrio salmonicida LFI1238 GTP pyrophosphokinase YP_002263866.1 2697759 R 316275 CDS YP_002263867.1 209695937 6989086 complement(2700070..2701386) 1 NC_011312.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 2701386 rumA 6989086 rumA Aliivibrio salmonicida LFI1238 23S rRNA 5-methyluridine methyltransferase YP_002263867.1 2700070 R 316275 CDS YP_002263868.1 209695938 6989215 2701550..2704339 1 NC_011312.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 2704339 varS 6989215 varS Aliivibrio salmonicida LFI1238 hybrid sensory histidine kinase BarA YP_002263868.1 2701550 D 316275 CDS YP_002263869.1 209695939 6988202 complement(2704391..2704771) 1 NC_011312.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2704771 acpS 6988202 acpS Aliivibrio salmonicida LFI1238 4'-phosphopantetheinyl transferase YP_002263869.1 2704391 R 316275 CDS YP_002263870.1 209695940 6988220 complement(2704771..2705502) 1 NC_011312.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2705502 pdxJ 6988220 pdxJ Aliivibrio salmonicida LFI1238 pyridoxine 5'-phosphate synthase YP_002263870.1 2704771 R 316275 CDS YP_002263871.1 209695941 6988955 complement(2705499..2706215) 1 NC_011312.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2706215 recO 6988955 recO Aliivibrio salmonicida LFI1238 DNA repair protein RecO YP_002263871.1 2705499 R 316275 CDS YP_002263872.1 209695942 6989083 complement(2706343..2707308) 1 NC_011312.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2707308 era 6989083 era Aliivibrio salmonicida LFI1238 GTP-binding protein Era YP_002263872.1 2706343 R 316275 CDS YP_002263873.1 209695943 6988456 complement(2707308..2707979) 1 NC_011312.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2707979 rnc 6988456 rnc Aliivibrio salmonicida LFI1238 ribonuclease III YP_002263873.1 2707308 R 316275 CDS YP_002263874.1 209695944 6989128 complement(2707990..2708892) 1 NC_011312.1 signal peptidase I (leader peptidase I) 2708892 lepB 6989128 lepB Aliivibrio salmonicida LFI1238 signal peptidase I (leader peptidase I) YP_002263874.1 2707990 R 316275 CDS YP_002263875.1 209695945 6988742 complement(2709013..2710806) 1 NC_011312.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2710806 lepA 6988742 lepA Aliivibrio salmonicida LFI1238 GTP-binding protein LepA YP_002263875.1 2709013 R 316275 CDS YP_002263876.1 209695946 6988741 complement(2710896..2711381) 1 NC_011312.1 Similar to Escherichia coli Sigma-E factor regulatory protein RseC UniProt:P46187 (159 aa) fasta scores: E()=2.8e-09, 32.877% id in 146 aa; sigma-E factor regulatory protein RseC 2711381 6988741 VSAL_I2528 Aliivibrio salmonicida LFI1238 sigma-E factor regulatory protein RseC YP_002263876.1 2710896 R 316275 CDS YP_002263877.1 209695947 6987798 complement(2711386..2712363) 1 NC_011312.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 2712363 rseB 6987798 rseB Aliivibrio salmonicida LFI1238 periplasmic negative regulator of sigmaE YP_002263877.1 2711386 R 316275 CDS YP_002263878.1 209695948 6987799 complement(2712364..2712981) 1 NC_011312.1 sigma-E factor negative regulatory protein 2712981 6987799 VSAL_I2530 Aliivibrio salmonicida LFI1238 sigma-E factor negative regulatory protein YP_002263878.1 2712364 R 316275 CDS YP_002263879.1 209695949 6987800 complement(2713011..2713589) 1 NC_011312.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2713589 rpoE 6987800 rpoE Aliivibrio salmonicida LFI1238 RNA polymerase sigma factor RpoE YP_002263879.1 2713011 R 316275 CDS YP_002263880.1 209695950 6989183 2713911..2715527 1 NC_011312.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2715527 nadB 6989183 nadB Aliivibrio salmonicida LFI1238 L-aspartate oxidase YP_002263880.1 2713911 D 316275 CDS YP_002263881.1 209695951 6988875 complement(2715627..2715998) 1 NC_011312.1 CDS contanins a rare Valine start codon (GTT); hypothetical protein 2715998 6988875 VSAL_I2533 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263881.1 2715627 R 316275 CDS YP_002263882.1 209695952 6987801 complement(2715994..2716254) 1 NC_011312.1 hypothetical protein 2716254 6987801 VSAL_I2534 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263882.1 2715994 R 316275 CDS YP_002263883.1 209695953 6987802 2716433..2717389 1 NC_011312.1 hypothetical protein 2717389 6987802 VSAL_I2535 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263883.1 2716433 D 316275 CDS YP_002263884.1 209695954 6987803 2717851..2718054 1 NC_011312.1 hypothetical protein 2718054 6987803 VSAL_I2536 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263884.1 2717851 D 316275 CDS YP_002263885.1 209695955 6987804 complement(2718141..2719346) 1 NC_011312.1 catalyzes the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone from 2-octaprenyl-6-methoxyphenol; 2-octaprenyl-6-methoxyphenol hydroxylase 2719346 6987804 VSAL_I2537 Aliivibrio salmonicida LFI1238 2-octaprenyl-6-methoxyphenol hydroxylase YP_002263885.1 2718141 R 316275 CDS YP_002263886.1 209695956 6987805 complement(2719349..2720548) 1 NC_011312.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 2720548 ubiH 6987805 ubiH Aliivibrio salmonicida LFI1238 2-octaprenyl-6-methoxyphenyl hydroxylase YP_002263886.1 2719349 R 316275 CDS YP_002263887.1 209695957 6989354 complement(2720548..2721117) 1 NC_011312.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 2721117 6989354 VSAL_I2539 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263887.1 2720548 R 316275 CDS YP_002263888.1 209695958 6987806 2721355..2721696 1 NC_011312.1 cell division protein ZapA 2721696 6987806 VSAL_I2540 Aliivibrio salmonicida LFI1238 cell division protein ZapA YP_002263888.1 2721355 D 316275 CDS YP_002263889.1 209695959 6988164 2721911..2722492 1 NC_011312.1 5-formyltetrahydrofolate cyclo-ligase 2722492 6988164 VSAL_I2541 Aliivibrio salmonicida LFI1238 5-formyltetrahydrofolate cyclo-ligase YP_002263889.1 2721911 D 316275 CDS YP_002263890.1 209695960 6987808 2722637..2723293 1 NC_011312.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2723293 rpiA 6987808 rpiA Aliivibrio salmonicida LFI1238 ribose-5-phosphate isomerase A YP_002263890.1 2722637 D 316275 CDS YP_002263891.1 209695961 6989145 2723481..2724362 1 NC_011312.1 transposase 2724362 6989145 VSAL_I2543 Aliivibrio salmonicida LFI1238 transposase YP_002263891.1 2723481 D 316275 CDS YP_002263892.1 209695962 6987809 2724503..2725732 1 NC_011312.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2725732 serA 6987809 serA Aliivibrio salmonicida LFI1238 D-3-phosphoglycerate dehydrogenase YP_002263892.1 2724503 D 316275 CDS YP_002263893.1 209695963 6989239 complement(2725835..2726530) 1 NC_011312.1 hypothetical protein 2726530 6989239 VSAL_I2545 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263893.1 2725835 R 316275 CDS YP_002263894.1 209695964 6987810 complement(2726695..2727555) 1 NC_011312.1 small-conductance mechanosensitive channel 2727555 mscS 6987810 mscS Aliivibrio salmonicida LFI1238 small-conductance mechanosensitive channel YP_002263894.1 2726695 R 316275 CDS YP_002263895.1 209695965 6988835 complement(2727812..2728591) 1 NC_011312.1 hypothetical protein 2728591 6988835 VSAL_I2547 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263895.1 2727812 R 316275 CDS YP_002263896.1 209695966 6987811 complement(2728705..2730138) 1 NC_011312.1 Similar to Escherichia coli transporter YaaJ UniProt:P30143 (476 aa) fasta scores: E()=1.4e-85, 51.392% id in 467 aa; amino-acid transporter 2730138 6987811 VSAL_I2548 Aliivibrio salmonicida LFI1238 amino-acid transporter YP_002263896.1 2728705 R 316275 CDS YP_002263897.1 209695967 6987812 2730866..2731054 1 NC_011312.1 hypothetical protein 2731054 6987812 VSAL_I2549 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263897.1 2730866 D 316275 CDS YP_002263898.1 209695968 6987813 complement(2731097..2731627) 1 NC_011312.1 hemerythrin 2731627 6987813 VSAL_I2550 Aliivibrio salmonicida LFI1238 hemerythrin YP_002263898.1 2731097 R 316275 CDS YP_002263899.1 209695969 6987814 complement(2731716..2732390) 1 NC_011312.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2732390 ung 6987814 ung Aliivibrio salmonicida LFI1238 uracil-DNA glycosylase YP_002263899.1 2731716 R 316275 CDS YP_002263900.1 209695970 6989357 complement(2732391..2733239) 1 NC_011312.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2733239 nfo 6989357 nfo Aliivibrio salmonicida LFI1238 endonuclease IV YP_002263900.1 2732391 R 316275 CDS YP_002263901.1 209695971 6988894 2733601..2733978 1 NC_011312.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 2733978 grcA 6988894 grcA Aliivibrio salmonicida LFI1238 autonomous glycyl radical cofactor GrcA YP_002263901.1 2733601 D 316275 CDS YP_002263902.1 209695972 6988622 complement(2734134..2735417) 1 NC_011312.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2735417 thrC 6988622 thrC Aliivibrio salmonicida LFI1238 threonine synthase YP_002263902.1 2734134 R 316275 CDS YP_002263903.1 209695973 6989294 complement(2735414..2736370) 1 NC_011312.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2736370 thrB 6989294 thrB Aliivibrio salmonicida LFI1238 homoserine kinase YP_002263903.1 2735414 R 316275 CDS YP_002263904.1 209695974 6989293 complement(2736372..2738831) 1 NC_011312.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 2738831 thrA 6989293 thrA Aliivibrio salmonicida LFI1238 bifunctional aspartokinase I/homoserine dehydrogenase I YP_002263904.1 2736372 R 316275 CDS YP_002263905.1 209695975 6988165 complement(2739226..2739702) 1 NC_011312.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2739702 6988165 VSAL_I2557 Aliivibrio salmonicida LFI1238 ribonuclease activity regulator protein RraA YP_002263905.1 2739226 R 316275 CDS YP_002263906.1 209695976 6987815 2740146..2740865 1 NC_011312.1 two-component response regulator 2740865 arcA 6987815 arcA Aliivibrio salmonicida LFI1238 two-component response regulator YP_002263906.1 2740146 D 316275 CDS YP_002263907.1 209695977 6988246 complement(2740940..2741386) 1 NC_011312.1 lipoprotein 2741386 6988246 VSAL_I2559 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263907.1 2740940 R 316275 CDS YP_002263908.1 209695978 6987816 complement(2741396..2743762) 1 NC_011312.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 2743762 arcB 6987816 arcB Aliivibrio salmonicida LFI1238 aerobic respiration control sensor protein ArcB YP_002263908.1 2741396 R 316275 CDS YP_002263909.1 209695979 6987817 2745319..2749866 1 NC_011312.1 Similar to Synechocystis sp. Ferredoxin-dependent glutamate synthase 1 GltB UniProt:P55037 (1550 aa) fasta scores: E()=0, 54.714% id in 1506 aa; glutamate synthase, large subunit 2749866 gltB 6987817 gltB Aliivibrio salmonicida LFI1238 glutamate synthase, large subunit YP_002263909.1 2745319 D 316275 CDS YP_002263910.1 209695980 6988606 2749866..2751338 1 NC_011312.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 2751338 gltD 6988606 gltD Aliivibrio salmonicida LFI1238 glutamate synthase subunit beta YP_002263910.1 2749866 D 316275 CDS YP_002263911.1 209695981 6987818 2751503..2751934 1 NC_011312.1 lipoprotein 2751934 6987818 VSAL_I2564 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263911.1 2751503 D 316275 CDS YP_002263912.1 209695982 6988169 2757664..2758359 1 NC_011312.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2758359 mtnN 6988169 mtnN Aliivibrio salmonicida LFI1238 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_002263912.1 2757664 D 316275 CDS YP_002263913.1 209695983 6988857 2758425..2759378 1 NC_011312.1 catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid; adenosylcobinamide-phosphate synthase 2759378 6988857 VSAL_I2566 Aliivibrio salmonicida LFI1238 adenosylcobinamide-phosphate synthase YP_002263913.1 2758425 D 316275 CDS YP_002263914.1 209695984 6987820 2759421..2760032 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein YadS UniProt:P0AFP0 (207 aa) fasta scores: E()=3e-47, 65.686% id in 204 aa; hypothetical protein 2760032 6987820 VSAL_I2567 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263914.1 2759421 D 316275 CDS YP_002263915.1 209695985 6987821 2760222..2761532 1 NC_011312.1 membrane associated peptidase 2761532 6987821 VSAL_I2568 Aliivibrio salmonicida LFI1238 membrane associated peptidase YP_002263915.1 2760222 D 316275 CDS YP_002263916.1 209695986 6987822 complement(2761549..2764677) 1 NC_011312.1 Similar to Escherichia coli multidrug resistance protein MdtB UniProt:P76398 (1040 aa) blastp scores: E()=3e-49; integral membrane protein, multidrug resistance protein 2764677 6987822 VSAL_I2569 Aliivibrio salmonicida LFI1238 integral membrane protein, multidrug resistance protein YP_002263916.1 2761549 R 316275 CDS YP_002263917.1 209695987 6987823 complement(2764687..2765799) 1 NC_011312.1 Similar to Pseudomonas aeruginosa Multidrug resistance protein MexA (PDB 1T5E), evalue=4e-09 identity=(69, 326); hypothetical protein 2765799 6987823 VSAL_I2570 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263917.1 2764687 R 316275 CDS YP_002263918.1 209695988 6987824 complement(2765930..2766271) 1 NC_011312.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 2766271 6987824 VSAL_I2571 Aliivibrio salmonicida LFI1238 iron-sulfur cluster insertion protein ErpA YP_002263918.1 2765930 R 316275 CDS YP_002263919.1 209695989 6987825 2766507..2767802 1 NC_011312.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 2767802 hemL 6987825 hemL Aliivibrio salmonicida LFI1238 glutamate-1-semialdehyde aminotransferase YP_002263919.1 2766507 D 316275 CDS YP_002263920.1 209695990 6988648 2768062..2769147 1 NC_011312.1 Expression may be stress-induced; membrane protein 2769147 6988648 VSAL_I2573 Aliivibrio salmonicida LFI1238 membrane protein YP_002263920.1 2768062 D 316275 CDS YP_002263921.1 209695991 6987826 2769232..2770293 1 NC_011312.1 ribosomal RNA small subunit methyltransferase C (16S rRNA m2G120 methyltransferase) 2770293 rsmC 6987826 rsmC Aliivibrio salmonicida LFI1238 ribosomal RNA small subunit methyltransferase C (16S rRNA m2G120 methyltransferase) YP_002263921.1 2769232 D 316275 CDS YP_002263922.1 209695992 6989212 2770458..2773841 1 NC_011312.1 Similar to Endosymbiont of Riftia pachyptila Sensor protein RssA UniProt:O33541 (773 aa) fasta scores: E()=4e-31, 31.076% id in 502 aa; chitin degradation sensor protein 2773841 chiS 6989212 chiS Aliivibrio salmonicida LFI1238 chitin degradation sensor protein YP_002263922.1 2770458 D 316275 CDS YP_002263923.1 209695993 6987827 2776248..2777234 1 NC_011312.1 Similar to Bacillus subtilis Oligopeptide transport system permease protein OppB UniProt:P24138 (311 aa) blastp scores: E()=2e-38; ABC transporter permease 2777234 6987827 VSAL_I2577 Aliivibrio salmonicida LFI1238 ABC transporter permease YP_002263923.1 2776248 D 316275 CDS YP_002263924.1 209695994 6987828 2777237..2778262 1 NC_011312.1 Similar to Bacillus subtilis Oligopeptide transport system permease protein AppC UniProt:P42063 (303 aa) blastp scores: E()=1e-31; ABC transoprter permease 2778262 6987828 VSAL_I2578 Aliivibrio salmonicida LFI1238 ABC transoprter permease YP_002263924.1 2777237 D 316275 CDS YP_002263925.1 209695995 6987829 2778264..2779247 1 NC_011312.1 Similar to Bacillus subtilis Dipeptide transport ATP-binding protein DppD UniProt:P26905 (335 aa) fasta scores: E()=2e-41, 42.722% id in 316 aa; ABC transporter ATP-binding protein 2779247 6987829 VSAL_I2579 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002263925.1 2778264 D 316275 CDS YP_002263926.1 209695996 6987830 2779271..2780266 1 NC_011312.1 Similar to Bacillus subtilis Oligopeptide transport ATP-binding protein appF UniProt:P42065 (329 aa) fasta scores: E()=1.1e-34, 38.138% id in 333 aa; ABC transporter ATP-binding protein 2780266 6987830 VSAL_I2580 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002263926.1 2779271 D 316275 CDS YP_002263927.1 209695997 6987831 2780318..2782045 1 NC_011312.1 chitobiase (exoglucosidase) 2782045 6987831 VSAL_I2581 Aliivibrio salmonicida LFI1238 chitobiase (exoglucosidase) YP_002263927.1 2780318 D 316275 CDS YP_002263928.1 209695998 6987832 2782038..2782913 1 NC_011312.1 glucosamine kinase 2782913 6987832 VSAL_I2582 Aliivibrio salmonicida LFI1238 glucosamine kinase YP_002263928.1 2782038 D 316275 CDS YP_002263929.1 209695999 6987833 2782932..2784740 1 NC_011312.1 beta-hexosaminidase (beta-N-acetylglucosaminidase) 2784740 exoI 6987833 exoI Aliivibrio salmonicida LFI1238 beta-hexosaminidase (beta-N-acetylglucosaminidase) YP_002263929.1 2782932 D 316275 CDS YP_002263930.1 209696000 6988462 2784878..2787166 1 NC_011312.1 chitobiose phosphorylase (glycosyl transferase) 2787166 chbP 6988462 chbP Aliivibrio salmonicida LFI1238 chitobiose phosphorylase (glycosyl transferase) YP_002263930.1 2784878 D 316275 CDS YP_002263931.1 209696001 6988317 2787270..2788682 1 NC_011312.1 phosphoglucomutase/phosphomannomutase 2788682 6988317 VSAL_I2585 Aliivibrio salmonicida LFI1238 phosphoglucomutase/phosphomannomutase YP_002263931.1 2787270 D 316275 CDS YP_002263932.1 209696002 6987834 complement(2788775..2789815) 1 NC_011312.1 iron(III) ABC transporter ATP-binding protein 2789815 fbpC 6987834 fbpC Aliivibrio salmonicida LFI1238 iron(III) ABC transporter ATP-binding protein YP_002263932.1 2788775 R 316275 CDS YP_002263933.1 209696003 6988484 complement(2789815..2791446) 1 NC_011312.1 Similar to Pasteurella haemolytica transmembrane permease FbpB UniProt:Q9ZHY1 (525 aa) fasta scores: E()=7.9e-94, 53.565% id in 519 aa; iron(III) ABC transporter permease 2791446 fbpB 6988484 fbpB Aliivibrio salmonicida LFI1238 iron(III) ABC transporter permease YP_002263933.1 2789815 R 316275 CDS YP_002263934.1 209696004 6988483 complement(2791514..2792527) 1 NC_011312.1 Expression may be regulated by Fur; iron(III) ABC transporter periplasmic iron-compound-binding protein 2792527 fbpA 6988483 fbpA Aliivibrio salmonicida LFI1238 iron(III) ABC transporter periplasmic iron-compound-binding protein YP_002263934.1 2791514 R 316275 CDS YP_002263935.1 209696005 6988482 complement(2792706..2793935) 1 NC_011312.1 Similar to Pseudomonas stutzeri ammonium transporter Amtb2 UniProt:Q8RPB0 (417 aa) fasta scores: E()=1.9e-74, 64.649% id in 413 aa; ammonium transporter 2793935 amtB 6988482 amtB Aliivibrio salmonicida LFI1238 ammonium transporter YP_002263935.1 2792706 R 316275 CDS YP_002263936.1 209696006 6988235 complement(2793956..2794294) 1 NC_011312.1 nitrogen regulatory protein P-II 2794294 glnB 6988235 glnB Aliivibrio salmonicida LFI1238 nitrogen regulatory protein P-II YP_002263936.1 2793956 R 316275 CDS YP_002263937.1 209696007 6988595 complement(2794462..2794830) 1 NC_011312.1 hypothetical protein 2794830 6988595 VSAL_I2591 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263937.1 2794462 R 316275 CDS YP_002263938.1 209696008 6987835 2794974..2796119 1 NC_011312.1 carbohydrate diacid regulator (sugar diacid regulator) 2796119 6987835 VSAL_I2592 Aliivibrio salmonicida LFI1238 carbohydrate diacid regulator (sugar diacid regulator) YP_002263938.1 2794974 D 316275 CDS YP_002263939.1 209696009 6987836 2796247..2797512 1 NC_011312.1 Similar to Escherichia coli High-affinity gluconate transporter GntP UniProt:P0AC94 (447 aa) fasta scores: E()=5.5e-06, 24.146% id in 439 aa; gluconate permease 2797512 6987836 VSAL_I2593 Aliivibrio salmonicida LFI1238 gluconate permease YP_002263939.1 2796247 D 316275 CDS YP_002263940.1 209696010 6987837 2797525..2798664 1 NC_011312.1 glycerate kinase 2798664 glxK 6987837 glxK Aliivibrio salmonicida LFI1238 glycerate kinase YP_002263940.1 2797525 D 316275 CDS YP_002263941.1 209696011 6988608 complement(2798754..2801342) 1 NC_011312.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2801342 acnB 6988608 acnB Aliivibrio salmonicida LFI1238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_002263941.1 2798754 R 316275 CDS YP_002263942.1 209696012 6987838 complement(2801617..2802498) 1 NC_011312.1 transposase 2802498 6987838 VSAL_I2597 Aliivibrio salmonicida LFI1238 transposase YP_002263942.1 2801617 R 316275 CDS YP_002263943.1 209696013 6987839 complement(2804916..2806403) 1 NC_011312.1 transposase 2806403 6987839 VSAL_I2598 Aliivibrio salmonicida LFI1238 transposase YP_002263943.1 2804916 R 316275 CDS YP_002263944.1 209696014 6987840 complement(2806475..2806822) 1 NC_011312.1 transposase 2806822 6987840 VSAL_I2599 Aliivibrio salmonicida LFI1238 transposase YP_002263944.1 2806475 R 316275 CDS YP_002263945.1 209696015 6987841 complement(2806819..2807133) 1 NC_011312.1 transposase 2807133 6987841 VSAL_I2600 Aliivibrio salmonicida LFI1238 transposase YP_002263945.1 2806819 R 316275 CDS YP_002263946.1 209696016 6988179 complement(2815769..2818144) 1 NC_011312.1 penicillin-binding protein transpeptidase 2818144 mrcB 6988179 mrcB Aliivibrio salmonicida LFI1238 penicillin-binding protein transpeptidase YP_002263946.1 2815769 R 316275 CDS YP_002263947.1 209696017 6988829 complement(2818175..2820640) 1 NC_011312.1 similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 2820640 hrpB 6988829 hrpB Aliivibrio salmonicida LFI1238 ATP-dependent RNA helicase HrpB YP_002263947.1 2818175 R 316275 CDS YP_002263948.1 209696018 6988681 2820700..2821407 1 NC_011312.1 sugar fermentation stimulation protein A 2821407 sfsA 6988681 sfsA Aliivibrio salmonicida LFI1238 sugar fermentation stimulation protein A YP_002263948.1 2820700 D 316275 CDS YP_002263949.1 209696019 6989245 2821552..2822022 1 NC_011312.1 DnaK suppressor protein 2822022 dksA 6989245 dksA Aliivibrio salmonicida LFI1238 DnaK suppressor protein YP_002263949.1 2821552 D 316275 CDS YP_002263950.1 209696020 6987844 2823105..2824430 1 NC_011312.1 Similar to Escherichia coli Poly(A) polymerase PcnB UniProt:P0ABF1 (472 aa) fasta scores: E()=6.1e-99, 57.798% id in 436 aa. The CDS appears to be truncated at the N-terminus; poly(A) polymerase (plasmid copy number protein) 2824430 pcnB 6987844 pcnB Aliivibrio salmonicida LFI1238 poly(A) polymerase (plasmid copy number protein) YP_002263950.1 2823105 D 316275 CDS YP_002263951.1 209696021 6988951 2824427..2824912 1 NC_011312.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2824912 folK 6988951 folK Aliivibrio salmonicida LFI1238 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_002263951.1 2824427 D 316275 CDS YP_002263952.1 209696022 6988557 2824935..2825729 1 NC_011312.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2825729 panB 6988557 panB Aliivibrio salmonicida LFI1238 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002263952.1 2824935 D 316275 CDS YP_002263953.1 209696023 6988943 2825739..2826635 1 NC_011312.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2826635 panC 6988943 panC Aliivibrio salmonicida LFI1238 pantoate--beta-alanine ligase YP_002263953.1 2825739 D 316275 CDS YP_002263954.1 209696024 6988944 complement(2826738..2828225) 1 NC_011312.1 transposase 2828225 6988944 VSAL_I2611 Aliivibrio salmonicida LFI1238 transposase YP_002263954.1 2826738 R 316275 CDS YP_002263955.1 209696025 6987846 complement(2828634..2828948) 1 NC_011312.1 transposase 2828948 6987846 VSAL_I2613 Aliivibrio salmonicida LFI1238 transposase YP_002263955.1 2828634 R 316275 CDS YP_002263956.1 209696026 6987847 complement(2829036..2829806) 1 NC_011312.1 Similar to Escherichia coli Inner membrane transport permease YadH UniProt:P0AFN6 (256 aa) fasta scores: E()=2.4e-55, 69.141% id in 256 aa; ABC transporter 2829806 6987847 VSAL_I2614 Aliivibrio salmonicida LFI1238 ABC transporter YP_002263956.1 2829036 R 316275 CDS YP_002263957.1 209696027 6987848 complement(2829806..2830723) 1 NC_011312.1 Similar to Thermotoga maritima msb8 ABC transporter ATP-binding protein (TM0544) (PDB 1VPL), evalue=4e-36 identity=(82, 233); ABC transporter ATP-binding protein 2830723 6987848 VSAL_I2615 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002263957.1 2829806 R 316275 CDS YP_002263958.1 209696028 6987849 2830820..2831479 1 NC_011312.1 carbonic anhydrase 2 2831479 can 6987849 can Aliivibrio salmonicida LFI1238 carbonic anhydrase 2 YP_002263958.1 2830820 D 316275 CDS YP_002263959.1 209696029 6988301 complement(2831570..2831821) 1 NC_011312.1 hypothetical protein 2831821 6988301 VSAL_I2617 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263959.1 2831570 R 316275 CDS YP_002263960.1 209696030 6987850 complement(2832308..2832838) 1 NC_011312.1 hypoxanthine phosphoribosyltransferase 2832838 hpt 6987850 hpt Aliivibrio salmonicida LFI1238 hypoxanthine phosphoribosyltransferase YP_002263960.1 2832308 R 316275 CDS YP_002263961.1 209696031 6988679 2833164..2833769 1 NC_011312.1 LitR family transcriptional regulator 2833769 litR 6988679 litR Aliivibrio salmonicida LFI1238 LitR family transcriptional regulator YP_002263961.1 2833164 D 316275 CDS YP_002263962.1 209696032 6987852 complement(2835691..2836005) 1 NC_011312.1 transposase 2836005 6987852 VSAL_I2622 Aliivibrio salmonicida LFI1238 transposase YP_002263962.1 2835691 R 316275 CDS YP_002263963.1 209696033 6987853 complement(2836169..2837596) 1 NC_011312.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2837596 lpdA 6987853 lpdA Aliivibrio salmonicida LFI1238 dihydrolipoamide dehydrogenase YP_002263963.1 2836169 R 316275 CDS YP_002263964.1 209696034 6988216 complement(2839473..2842136) 1 NC_011312.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 2842136 aceE 6988216 aceE Aliivibrio salmonicida LFI1238 pyruvate dehydrogenase subunit E1 YP_002263964.1 2839473 R 316275 CDS YP_002263965.1 209696035 6988215 complement(2842192..2842962) 1 NC_011312.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 2842962 pdhR 6988215 pdhR Aliivibrio salmonicida LFI1238 transcriptional regulator PdhR YP_002263965.1 2842192 R 316275 CDS YP_002263966.1 209696036 6988952 complement(2843249..2843800) 1 NC_011312.1 N-acetyl-anhydromuranmyl-L-alanine amidase 2843800 ampD 6988952 ampD Aliivibrio salmonicida LFI1238 N-acetyl-anhydromuranmyl-L-alanine amidase YP_002263966.1 2843249 R 316275 CDS YP_002263967.1 209696037 6988234 2843902..2844801 1 NC_011312.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 2844801 nadC 6988234 nadC Aliivibrio salmonicida LFI1238 quinolinate phosphoribosyltransferase YP_002263967.1 2843902 D 316275 CDS YP_002263968.1 209696038 6988876 2845150..2845566 1 NC_011312.1 type IV pilus subunit PilA 2845566 pilA 6988876 pilA Aliivibrio salmonicida LFI1238 type IV pilus subunit PilA YP_002263968.1 2845150 D 316275 CDS YP_002263969.1 209696039 6988976 2845569..2847260 1 NC_011312.1 type IV pilus assembly protein PilB 2847260 pilB 6988976 pilB Aliivibrio salmonicida LFI1238 type IV pilus assembly protein PilB YP_002263969.1 2845569 D 316275 CDS YP_002263970.1 209696040 6988978 2848634..2849521 1 NC_011312.1 type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD) 2849521 pilD 6988978 pilD Aliivibrio salmonicida LFI1238 type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD) YP_002263970.1 2848634 D 316275 CDS YP_002263971.1 209696041 6988979 2849518..2850141 1 NC_011312.1 dephospho-CoA kinase (dephosphocoenzyme a kinase) 2850141 coaE 6988979 coaE Aliivibrio salmonicida LFI1238 dephospho-CoA kinase (dephosphocoenzyme a kinase) YP_002263971.1 2849518 D 316275 CDS YP_002263972.1 209696042 6988342 2850150..2850896 1 NC_011312.1 hypothetical protein 2850896 6988342 VSAL_I2634 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263972.1 2850150 D 316275 CDS YP_002263973.1 209696043 6987854 2850904..2851113 1 NC_011312.1 zinc-binding protein 2851113 6987854 VSAL_I2635 Aliivibrio salmonicida LFI1238 zinc-binding protein YP_002263973.1 2850904 D 316275 CDS YP_002263974.1 209696044 6987855 complement(2851181..2851582) 1 NC_011312.1 mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) 2851582 mutT 6987855 mutT Aliivibrio salmonicida LFI1238 mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) YP_002263974.1 2851181 R 316275 CDS YP_002263975.1 209696045 6988871 complement(2851682..2854405) 1 NC_011312.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 2854405 6988871 VSAL_I2637 Aliivibrio salmonicida LFI1238 preprotein translocase subunit SecA YP_002263975.1 2851682 R 316275 CDS YP_002263976.1 209696046 6987856 2854719..2855186 1 NC_011312.1 hypothetical protein 2855186 6987856 VSAL_I2638 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263976.1 2854719 D 316275 CDS YP_002263977.1 209696047 6987857 complement(2855249..2856166) 1 NC_011312.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2856166 lpxC 6987857 lpxC Aliivibrio salmonicida LFI1238 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_002263977.1 2855249 R 316275 CDS YP_002263978.1 209696048 6988759 complement(2856272..2857507) 1 NC_011312.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 2857507 ftsZ 6988759 ftsZ Aliivibrio salmonicida LFI1238 cell division protein FtsZ YP_002263978.1 2856272 R 316275 CDS YP_002263979.1 209696049 6988575 complement(2857540..2858802) 1 NC_011312.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 2858802 ftsA 6988575 ftsA Aliivibrio salmonicida LFI1238 cell division protein FtsA YP_002263979.1 2857540 R 316275 CDS YP_002263980.1 209696050 6988566 complement(2858804..2859574) 1 NC_011312.1 cell division protein FtsQ 2859574 ftsQ 6988566 ftsQ Aliivibrio salmonicida LFI1238 cell division protein FtsQ YP_002263980.1 2858804 R 316275 CDS YP_002263981.1 209696051 6988571 complement(2859781..2861244) 1 NC_011312.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 2861244 murC 6988571 murC Aliivibrio salmonicida LFI1238 UDP-N-acetylmuramate--L-alanine ligase YP_002263981.1 2859781 R 316275 CDS YP_002263982.1 209696052 6988860 complement(2861263..2862327) 1 NC_011312.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 2862327 murG 6988860 murG Aliivibrio salmonicida LFI1238 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_002263982.1 2861263 R 316275 CDS YP_002263983.1 209696053 6988864 complement(2862311..2863513) 1 NC_011312.1 cell division protein FtsW 2863513 ftsW 6988864 ftsW Aliivibrio salmonicida LFI1238 cell division protein FtsW YP_002263983.1 2862311 R 316275 CDS YP_002263984.1 209696054 6988572 complement(2863516..2864844) 1 NC_011312.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 2864844 murD 6988572 murD Aliivibrio salmonicida LFI1238 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_002263984.1 2863516 R 316275 CDS YP_002263985.1 209696055 6988861 complement(2864846..2865928) 1 NC_011312.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2865928 mraY 6988861 mraY Aliivibrio salmonicida LFI1238 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002263985.1 2864846 R 316275 CDS YP_002263986.1 209696056 6988827 complement(2865928..2867286) 1 NC_011312.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase 2867286 murF 6988827 murF Aliivibrio salmonicida LFI1238 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase YP_002263986.1 2865928 R 316275 CDS YP_002263987.1 209696057 6988863 complement(2867283..2868764) 1 NC_011312.1 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase 2868764 murE 6988863 murE Aliivibrio salmonicida LFI1238 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase YP_002263987.1 2867283 R 316275 CDS YP_002263988.1 209696058 6988862 complement(2868772..2870511) 1 NC_011312.1 peptidoglycan synthetase FtsI precursor (peptidoglycan glycosyltransferase 3) (penicillin-binding protein 3) 2870511 ftsI 6988862 ftsI Aliivibrio salmonicida LFI1238 peptidoglycan synthetase FtsI precursor (peptidoglycan glycosyltransferase 3) (penicillin-binding protein 3) YP_002263988.1 2868772 R 316275 CDS YP_002263989.1 209696059 6988569 complement(2870508..2870834) 1 NC_011312.1 cell division protein FtsL 2870834 ftsL 6988569 ftsL Aliivibrio salmonicida LFI1238 cell division protein FtsL YP_002263989.1 2870508 R 316275 CDS YP_002263990.1 209696060 6988570 complement(2870831..2871781) 1 NC_011312.1 S-adenosyl-methyltransferase MraW 2871781 mraW 6988570 mraW Aliivibrio salmonicida LFI1238 S-adenosyl-methyltransferase MraW YP_002263990.1 2870831 R 316275 CDS YP_002263991.1 209696061 6988826 complement(2872413..2873276) 1 NC_011312.1 Similar to Bacteroides thetaiotaomicron VPI-5482 S-adenosylmethionine-dependent methytransferase (PDB 1WYZ), evalue=6e-15 identity=(52, 204); tetrapyrrole methyltransferase 2873276 6988826 VSAL_I2653 Aliivibrio salmonicida LFI1238 tetrapyrrole methyltransferase YP_002263991.1 2872413 R 316275 CDS YP_002263992.1 209696062 6987858 2873413..2875224 1 NC_011312.1 lipoprotein LppC 2875224 6987858 VSAL_I2654 Aliivibrio salmonicida LFI1238 lipoprotein LppC YP_002263992.1 2873413 D 316275 CDS YP_002263993.1 209696063 6987859 2875205..2875576 1 NC_011312.1 hypothetical protein 2875576 6987859 VSAL_I2655 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002263993.1 2875205 D 316275 CDS YP_002263994.1 209696064 6987860 2875580..2876170 1 NC_011312.1 DnaA initiator-associating protein DiaA 2876170 diaA 6987860 diaA Aliivibrio salmonicida LFI1238 DnaA initiator-associating protein DiaA YP_002263994.1 2875580 D 316275 CDS YP_002263995.1 209696065 6988406 2876176..2876763 1 NC_011312.1 lipoprotein 2876763 6988406 VSAL_I2657 Aliivibrio salmonicida LFI1238 lipoprotein YP_002263995.1 2876176 D 316275 CDS YP_002263996.1 209696066 6987861 complement(2876810..2877265) 1 NC_011312.1 ClpXP protease specificity-enhancing factor 2877265 sspB 6987861 sspB Aliivibrio salmonicida LFI1238 ClpXP protease specificity-enhancing factor YP_002263996.1 2876810 R 316275 CDS YP_002263997.1 209696067 6989261 complement(2877265..2877930) 1 NC_011312.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 2877930 sspA 6989261 sspA Aliivibrio salmonicida LFI1238 stringent starvation protein A YP_002263997.1 2877265 R 316275 CDS YP_002263998.1 209696068 6989260 complement(2878087..2878824) 1 NC_011312.1 Similar to Bradyrhizobium japonicum Cytochrome b/c1 FbcH UniProt:P51131 (687 aa) blastp scores: E()=2e-11; ubiquinol--cytochrome c reductase, cytochrome C1 2878824 6989260 VSAL_I2660 Aliivibrio salmonicida LFI1238 ubiquinol--cytochrome c reductase, cytochrome C1 YP_002263998.1 2878087 R 316275 CDS YP_002263999.1 209696069 6987862 complement(2878821..2880089) 1 NC_011312.1 ubiquinol--cytochrome c reductase, cytochrome B 2880089 petB 6987862 petB Aliivibrio salmonicida LFI1238 ubiquinol--cytochrome c reductase, cytochrome B YP_002263999.1 2878821 R 316275 CDS YP_002264000.1 209696070 6988960 complement(2880089..2880697) 1 NC_011312.1 ubiquinol-cytochrome c reductase iron-sulfur subunit (rieske iron-sulfur protein) 2880697 6988960 VSAL_I2662 Aliivibrio salmonicida LFI1238 ubiquinol-cytochrome c reductase iron-sulfur subunit (rieske iron-sulfur protein) YP_002264000.1 2880089 R 316275 CDS YP_002264001.1 209696071 6987863 complement(2881079..2881471) 1 NC_011312.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2881471 rpsI 6987863 rpsI Aliivibrio salmonicida LFI1238 30S ribosomal protein S9 YP_002264001.1 2881079 R 316275 CDS YP_002264002.1 209696072 6989196 complement(2881487..2881915) 1 NC_011312.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2881915 rplM 6989196 rplM Aliivibrio salmonicida LFI1238 50S ribosomal protein L13 YP_002264002.1 2881487 R 316275 CDS YP_002264003.1 209696073 6989156 complement(2882194..2883300) 1 NC_011312.1 hypothetical protein 2883300 6989156 VSAL_I2665 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264003.1 2882194 R 316275 CDS YP_002264004.1 209696074 6987864 2883425..2883880 1 NC_011312.1 cytochrome D ubiquinol oxidase subunit III 2883880 6987864 VSAL_I2666 Aliivibrio salmonicida LFI1238 cytochrome D ubiquinol oxidase subunit III YP_002264004.1 2883425 D 316275 CDS YP_002264005.1 209696075 6987865 2883961..2885328 1 NC_011312.1 serine protease 2885328 6987865 VSAL_I2667 Aliivibrio salmonicida LFI1238 serine protease YP_002264005.1 2883961 D 316275 CDS YP_002264006.1 209696076 6987866 2885461..2886525 1 NC_011312.1 serine protease 2886525 6987866 VSAL_I2668 Aliivibrio salmonicida LFI1238 serine protease YP_002264006.1 2885461 D 316275 CDS YP_002264007.1 209696077 6987867 complement(2886649..2888919) 1 NC_011312.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 2888919 parC 6987867 parC Aliivibrio salmonicida LFI1238 DNA topoisomerase IV subunit A YP_002264007.1 2886649 R 316275 CDS YP_002264008.1 209696078 6988946 complement(2888923..2890803) 1 NC_011312.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 2890803 parE 6988946 parE Aliivibrio salmonicida LFI1238 DNA topoisomerase IV subunit B YP_002264008.1 2888923 R 316275 CDS YP_002264009.1 209696079 6988947 complement(2890947..2891531) 1 NC_011312.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA 2891531 6988947 VSAL_I2671 Aliivibrio salmonicida LFI1238 esterase YqiA YP_002264009.1 2890947 R 316275 CDS YP_002264010.1 209696080 6987868 complement(2891533..2892357) 1 NC_011312.1 Similar to Escherichia coli Protein icc UniProt:P0AEW4 (275 aa) fasta scores: E()=1.1e-56, 52.490% id in 261 aa; cyclic 3',5'-adenosine monophosphate phosphodiesterase 2892357 6987868 VSAL_I2672 Aliivibrio salmonicida LFI1238 cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_002264010.1 2891533 R 316275 CDS YP_002264011.1 209696081 6987869 complement(2892381..2892812) 1 NC_011312.1 hypothetical protein 2892812 6987869 VSAL_I2673 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264011.1 2892381 R 316275 CDS YP_002264012.1 209696082 6987870 complement(2892805..2893452) 1 NC_011312.1 ADP-ribose pyrophosphatase 2893452 nudF 6987870 nudF Aliivibrio salmonicida LFI1238 ADP-ribose pyrophosphatase YP_002264012.1 2892805 R 316275 CDS YP_002264013.1 209696083 6988923 2893685..2895010 1 NC_011312.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 2895010 tolC 6988923 tolC Aliivibrio salmonicida LFI1238 outer membrane channel protein YP_002264013.1 2893685 D 316275 CDS YP_002264014.1 209696084 6989305 complement(2895086..2896516) 1 NC_011312.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 2896516 hldE 6989305 hldE Aliivibrio salmonicida LFI1238 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_002264014.1 2895086 R 316275 CDS YP_002264015.1 209696085 6988671 complement(2896686..2899526) 1 NC_011312.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2899526 glnE 6988671 glnE Aliivibrio salmonicida LFI1238 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_002264015.1 2896686 R 316275 CDS YP_002264016.1 209696086 6988597 complement(2899652..2901253) 1 NC_011312.1 methyl-accepting chemotaxis protein 2901253 6988597 VSAL_I2678 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002264016.1 2899652 R 316275 CDS YP_002264017.1 209696087 6987871 2901363..2902124 1 NC_011312.1 ion transport protein 2902124 6987871 VSAL_I2679 Aliivibrio salmonicida LFI1238 ion transport protein YP_002264017.1 2901363 D 316275 CDS YP_002264018.1 209696088 6987872 complement(2902179..2903696) 1 NC_011312.1 hypothetical protein 2903696 6987872 VSAL_I2680 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264018.1 2902179 R 316275 CDS YP_002264019.1 209696089 6987873 2903883..2904563 1 NC_011312.1 hypothetical protein 2904563 6987873 VSAL_I2681 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264019.1 2903883 D 316275 CDS YP_002264020.1 209696090 6987874 2904591..2905877 1 NC_011312.1 phosphate transporter 2905877 6987874 VSAL_I2682 Aliivibrio salmonicida LFI1238 phosphate transporter YP_002264020.1 2904591 D 316275 CDS YP_002264021.1 209696091 6987875 2906052..2906663 1 NC_011312.1 hypothetical protein 2906663 6987875 VSAL_I2683 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264021.1 2906052 D 316275 CDS YP_002264022.1 209696092 6987876 complement(2906687..2908174) 1 NC_011312.1 transposase 2908174 6987876 VSAL_I2684 Aliivibrio salmonicida LFI1238 transposase YP_002264022.1 2906687 R 316275 CDS YP_002264023.1 209696093 6987877 complement(2908246..2908593) 1 NC_011312.1 transposase 2908593 6987877 VSAL_I2685 Aliivibrio salmonicida LFI1238 transposase YP_002264023.1 2908246 R 316275 CDS YP_002264024.1 209696094 6987878 complement(2908590..2908901) 1 NC_011312.1 transposase 2908901 6987878 VSAL_I2686 Aliivibrio salmonicida LFI1238 transposase YP_002264024.1 2908590 R 316275 CDS YP_002264025.1 209696095 6987879 complement(2909078..2909779) 1 NC_011312.1 hypothetical protein 2909779 6987879 VSAL_I2687 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264025.1 2909078 R 316275 CDS YP_002264026.1 209696096 6987880 complement(2909780..2911339) 1 NC_011312.1 general secretion pathway protein A 2911339 exeA 6987880 exeA Aliivibrio salmonicida LFI1238 general secretion pathway protein A YP_002264026.1 2909780 R 316275 CDS YP_002264027.1 209696097 6988459 2911481..2912704 1 NC_011312.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 2912704 cca 6988459 cca Aliivibrio salmonicida LFI1238 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_002264027.1 2911481 D 316275 CDS YP_002264028.1 209696098 6988304 complement(2912770..2913573) 1 NC_011312.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 2913573 6988304 VSAL_I2690 Aliivibrio salmonicida LFI1238 undecaprenyl pyrophosphate phosphatase YP_002264028.1 2912770 R 316275 CDS YP_002264029.1 209696099 6987881 complement(2913582..2914070) 1 NC_011312.1 Similar to Haemophilus influenzae 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK UniProt:P43777 (160 aa) fasta scores: E()=8.2e-09, 35.948% id in 153 aa; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2914070 6987881 VSAL_I2691 Aliivibrio salmonicida LFI1238 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_002264029.1 2913582 R 316275 CDS YP_002264030.1 209696100 6987882 complement(2914067..2914420) 1 NC_011312.1 dihydroneopterin aldolase 2914420 folB 6987882 folB Aliivibrio salmonicida LFI1238 dihydroneopterin aldolase YP_002264030.1 2914067 R 316275 CDS YP_002264031.1 209696101 6988553 2914566..2915147 1 NC_011312.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 2915147 6988553 VSAL_I2693 Aliivibrio salmonicida LFI1238 glycerol-3-phosphate acyltransferase PlsY YP_002264031.1 2914566 D 316275 CDS YP_002264032.1 209696102 6987883 complement(2915221..2916237) 1 NC_011312.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 2916237 gcp 6987883 gcp Aliivibrio salmonicida LFI1238 DNA-binding/iron metalloprotein/AP endonuclease YP_002264032.1 2915221 R 316275 CDS YP_002264033.1 209696103 6988585 2916710..2917153 1 NC_011312.1 hypothetical protein 2917153 6988585 VSAL_I2695 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264033.1 2916710 D 316275 CDS YP_002264034.1 209696104 6987884 2917267..2919027 1 NC_011312.1 synthesizes RNA primers at the replication forks; DNA primase 2919027 dnaG 6987884 dnaG Aliivibrio salmonicida LFI1238 DNA primase YP_002264034.1 2917267 D 316275 CDS YP_002264035.1 209696105 6988414 2919125..2920957 1 NC_011312.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 2920957 rpoD 6988414 rpoD Aliivibrio salmonicida LFI1238 RNA polymerase sigma factor RpoD YP_002264035.1 2919125 D 316275 CDS YP_002264036.1 209696106 6987885 2922389..2923933 1 NC_011312.1 Similar to Bacillus subtilis Long-chain-fatty-acid--CoA ligase LcfA UniProt:P94547 (560 aa) fasta scores: E()=1.9e-47, 34.594% id in 529 aa; AMP-binding enzyme, long chain fatty acid Co-A ligase, acetyl-CoA synthetase 2923933 6987885 VSAL_I2699 Aliivibrio salmonicida LFI1238 AMP-binding enzyme, long chain fatty acid Co-A ligase, acetyl-CoA synthetase YP_002264036.1 2922389 D 316275 CDS YP_002264037.1 209696107 6987886 2924023..2924424 1 NC_011312.1 membrane protein 2924424 6987886 VSAL_I2700 Aliivibrio salmonicida LFI1238 membrane protein YP_002264037.1 2924023 D 316275 CDS YP_002264038.1 209696108 6987887 2924806..2926218 1 NC_011312.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2926218 pykF 6987887 pykF Aliivibrio salmonicida LFI1238 pyruvate kinase YP_002264038.1 2924806 D 316275 CDS YP_002264039.1 209696109 6989047 2926447..2927106 1 NC_011312.1 GntR family transcriptional regulator 2927106 6989047 VSAL_I2702 Aliivibrio salmonicida LFI1238 GntR family transcriptional regulator YP_002264039.1 2926447 D 316275 CDS YP_002264040.1 209696110 6987888 complement(2927161..2927322) 1 NC_011312.1 hypothetical protein 2927322 6987888 VSAL_I2703 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264040.1 2927161 R 316275 CDS YP_002264041.1 209696111 6987889 complement(2927417..2929306) 1 NC_011312.1 membrane associated GGDEF protein 2929306 6987889 VSAL_I2704 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002264041.1 2927417 R 316275 CDS YP_002264042.1 209696112 6987890 complement(2929412..2929906) 1 NC_011312.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2929906 ilvH 6987890 ilvH Aliivibrio salmonicida LFI1238 acetolactate synthase 3 regulatory subunit YP_002264042.1 2929412 R 316275 CDS YP_002264043.1 209696113 6988710 complement(2929906..2931627) 1 NC_011312.1 acetolactate synthase 3 catalytic subunit 2931627 ilvI 6988710 ilvI Aliivibrio salmonicida LFI1238 acetolactate synthase 3 catalytic subunit YP_002264043.1 2929906 R 316275 CDS YP_002264044.1 209696114 6988711 complement(2931788..2933275) 1 NC_011312.1 transposase 2933275 6988711 VSAL_I2707 Aliivibrio salmonicida LFI1238 transposase YP_002264044.1 2931788 R 316275 CDS YP_002264045.1 209696115 6987891 complement(2933347..2933694) 1 NC_011312.1 transposase 2933694 6987891 VSAL_I2708 Aliivibrio salmonicida LFI1238 transposase YP_002264045.1 2933347 R 316275 CDS YP_002264046.1 209696116 6987892 complement(2933691..2934005) 1 NC_011312.1 transposase 2934005 6987892 VSAL_I2709 Aliivibrio salmonicida LFI1238 transposase YP_002264046.1 2933691 R 316275 CDS YP_002264047.1 209696117 6987893 2934250..2936124 1 NC_011312.1 catalyzes the formation of arginine from (N-L-arginino)succinate and the formation of N-acetylglutamate from glutamate and acetyl-CoA; bifunctional argininosuccinate lyase/N-acetylglutamate synthase 2936124 argHA 6987893 argHA Aliivibrio salmonicida LFI1238 bifunctional argininosuccinate lyase/N-acetylglutamate synthase YP_002264047.1 2934250 D 316275 CDS YP_002264048.1 209696118 6988254 complement(2936277..2936540) 1 NC_011312.1 hypothetical protein 2936540 6988254 VSAL_I2711 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264048.1 2936277 R 316275 CDS YP_002264049.1 209696119 6987894 complement(2936668..2938134) 1 NC_011312.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2938134 6987894 VSAL_I2712 Aliivibrio salmonicida LFI1238 dihydrolipoamide dehydrogenase YP_002264049.1 2936668 R 316275 CDS YP_002264050.1 209696120 6987895 complement(2938224..2938952) 1 NC_011312.1 hybrid peroxiredoxin (thioredoxin reductase) 2938952 6987895 VSAL_I2713 Aliivibrio salmonicida LFI1238 hybrid peroxiredoxin (thioredoxin reductase) YP_002264050.1 2938224 R 316275 CDS YP_002264051.1 209696121 6987896 2939132..2940040 1 NC_011312.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 2940040 oxyR 6987896 oxyR Aliivibrio salmonicida LFI1238 DNA-binding transcriptional regulator OxyR YP_002264051.1 2939132 D 316275 CDS YP_002264052.1 209696122 6988940 complement(2940107..2942605) 1 NC_011312.1 penicillin-binding protein 1A 2942605 mrcA 6988940 mrcA Aliivibrio salmonicida LFI1238 penicillin-binding protein 1A YP_002264052.1 2940107 R 316275 CDS YP_002264053.1 209696123 6988828 2942744..2943742 1 NC_011312.1 Similar to Myxococcus xanthus dk 1622 PilM UniProt:Q306N6 (366 aa) fasta scores: E()=1.3e-10, 24.085% id in 328 aa; fimbrial assembly protein PilM 2943742 pilM 6988828 pilM Aliivibrio salmonicida LFI1238 fimbrial assembly protein PilM YP_002264053.1 2942744 D 316275 CDS YP_002264054.1 209696124 6988980 2943727..2944296 1 NC_011312.1 Similar to Pseudomonas aeruginosa Type 4 fimbrial biogenesis protein PilN UniProt:Q51352 (198 aa) fasta scores: E()=1e-09, 26.452% id in 155 aa; fimbrial assembly protein PilN 2944296 pilN 6988980 pilN Aliivibrio salmonicida LFI1238 fimbrial assembly protein PilN YP_002264054.1 2943727 D 316275 CDS YP_002264055.1 209696125 6988981 2944289..2944870 1 NC_011312.1 Similar to Pseudomonas fluorescens Type IV pilus biogenesis protein PilO UniProt:Q4KJJ2 (207 aa) fasta scores: E()=6.3e-17, 35.106% id in 188 aa; fimbrial assembly protein PilO 2944870 pilO 6988981 pilO Aliivibrio salmonicida LFI1238 fimbrial assembly protein PilO YP_002264055.1 2944289 D 316275 CDS YP_002264056.1 209696126 6988982 2944863..2945381 1 NC_011312.1 Similar to Pseudomonas syringae Pilus expression protein PilP UniProt:Q52542 (175 aa) fasta scores: E()=7.2e-08, 28.481% id in 158 aa; fimbrial assembly protein PilP 2945381 pilP 6988982 pilP Aliivibrio salmonicida LFI1238 fimbrial assembly protein PilP YP_002264056.1 2944863 D 316275 CDS YP_002264057.1 209696127 6988984 complement(2946774..2947655) 1 NC_011312.1 transposase 2947655 6988984 VSAL_I2721 Aliivibrio salmonicida LFI1238 transposase YP_002264057.1 2946774 R 316275 CDS YP_002264058.1 209696128 6987897 2948361..2948879 1 NC_011312.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 2948879 aroK 6987897 aroK Aliivibrio salmonicida LFI1238 shikimate kinase I YP_002264058.1 2948361 D 316275 CDS YP_002264059.1 209696129 6988264 2948918..2950006 1 NC_011312.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 2950006 aroB 6988264 aroB Aliivibrio salmonicida LFI1238 3-dehydroquinate synthase YP_002264059.1 2948918 D 316275 CDS YP_002264060.1 209696130 6988259 2950010..2951527 1 NC_011312.1 Similar to Escherichia coli Protein DamX UniProt:P11557 (428 aa) fasta scores: E()=0.004, 23.109% id in 238 aa; cell division protein 2951527 6988259 VSAL_I2724 Aliivibrio salmonicida LFI1238 cell division protein YP_002264060.1 2950010 D 316275 CDS YP_002264061.1 209696131 6987898 2951599..2952429 1 NC_011312.1 DNA adenine methylase 2952429 dam 6987898 dam Aliivibrio salmonicida LFI1238 DNA adenine methylase YP_002264061.1 2951599 D 316275 CDS YP_002264062.1 209696132 6988387 2952552..2953229 1 NC_011312.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 2953229 rpe 6988387 rpe Aliivibrio salmonicida LFI1238 ribulose-phosphate 3-epimerase YP_002264062.1 2952552 D 316275 CDS YP_002264063.1 209696133 6989143 2953235..2953918 1 NC_011312.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 2953918 gph 6989143 gph Aliivibrio salmonicida LFI1238 phosphoglycolate phosphatase YP_002264063.1 2953235 D 316275 CDS YP_002264064.1 209696134 6988617 2954038..2955054 1 NC_011312.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2955054 trpS 6988617 trpS Aliivibrio salmonicida LFI1238 tryptophanyl-tRNA synthetase YP_002264064.1 2954038 D 316275 CDS YP_002264065.1 209696135 6989334 2955151..2955729 1 NC_011312.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 2955729 trpG 6989334 trpG Aliivibrio salmonicida LFI1238 para-aminobenzoate synthase component II YP_002264065.1 2955151 D 316275 CDS YP_002264066.1 209696136 6989332 2955955..2956269 1 NC_011312.1 transposase 2956269 6989332 VSAL_I2730 Aliivibrio salmonicida LFI1238 transposase YP_002264066.1 2955955 D 316275 CDS YP_002264067.1 209696137 6987899 2956266..2956613 1 NC_011312.1 transposase 2956613 6987899 VSAL_I2731 Aliivibrio salmonicida LFI1238 transposase YP_002264067.1 2956266 D 316275 CDS YP_002264068.1 209696138 6987900 2956685..2958172 1 NC_011312.1 transposase 2958172 6987900 VSAL_I2732 Aliivibrio salmonicida LFI1238 transposase YP_002264068.1 2956685 D 316275 CDS YP_002264069.1 209696139 6987901 2958360..2959574 1 NC_011312.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 2959574 argD 6987901 argD Aliivibrio salmonicida LFI1238 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_002264069.1 2958360 D 316275 CDS YP_002264070.1 209696140 6988267 2959736..2960755 1 NC_011312.1 arginine N-succinyltransferase 2960755 astA 6988267 astA Aliivibrio salmonicida LFI1238 arginine N-succinyltransferase YP_002264070.1 2959736 D 316275 CDS YP_002264071.1 209696141 6988275 2960768..2962225 1 NC_011312.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 2962225 astD 6988275 astD Aliivibrio salmonicida LFI1238 succinylglutamic semialdehyde dehydrogenase YP_002264071.1 2960768 D 316275 CDS YP_002264072.1 209696142 6988276 2962238..2963032 1 NC_011312.1 hypothetical protein 2963032 6988276 VSAL_I2736 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264072.1 2962238 D 316275 CDS YP_002264073.1 209696143 6987902 complement(2963117..2963749) 1 NC_011312.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 2963749 crp 6987902 crp Aliivibrio salmonicida LFI1238 cAMP-regulatory protein YP_002264073.1 2963117 R 316275 CDS YP_002264074.1 209696144 6988349 2963995..2964396 1 NC_011312.1 OsmC-like protein 2964396 6988349 VSAL_I2738 Aliivibrio salmonicida LFI1238 OsmC-like protein YP_002264074.1 2963995 D 316275 CDS YP_002264075.1 209696145 6987903 complement(2964469..2965803) 1 NC_011312.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 2965803 hslU 6987903 hslU Aliivibrio salmonicida LFI1238 ATP-dependent protease ATP-binding subunit HslU YP_002264075.1 2964469 R 316275 CDS YP_002264076.1 209696146 6988686 complement(2965816..2966346) 1 NC_011312.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 2966346 hslV 6988686 hslV Aliivibrio salmonicida LFI1238 ATP-dependent protease peptidase subunit YP_002264076.1 2965816 R 316275 CDS YP_002264077.1 209696147 6988687 complement(2966525..2967094) 1 NC_011312.1 Similar to Escherichia coli Divisome protein FtsN (PDB 1UTA), evalue=2e-06 identity=(22, 67); cell division protein FtsN 2967094 6988687 VSAL_I2741 Aliivibrio salmonicida LFI1238 cell division protein FtsN YP_002264077.1 2966525 R 316275 CDS YP_002264078.1 209696148 6987904 complement(2967266..2968273) 1 NC_011312.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR 2968273 cytR 6987904 cytR Aliivibrio salmonicida LFI1238 DNA-binding transcriptional regulator CytR YP_002264078.1 2967266 R 316275 CDS YP_002264079.1 209696149 6988384 complement(2968477..2970678) 1 NC_011312.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 2970678 priA 6988384 priA Aliivibrio salmonicida LFI1238 primosome assembly protein PriA YP_002264079.1 2968477 R 316275 CDS YP_002264080.1 209696150 6989006 2970934..2971152 1 NC_011312.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2971152 rpmE 6989006 rpmE Aliivibrio salmonicida LFI1238 50S ribosomal protein L31 YP_002264080.1 2970934 D 316275 CDS YP_002264081.1 209696151 6989173 2971385..2972632 1 NC_011312.1 NADP-dependent malic enzyme 2972632 maeB 6989173 maeB Aliivibrio salmonicida LFI1238 NADP-dependent malic enzyme YP_002264081.1 2971385 D 316275 CDS YP_002264082.1 209696152 6988774 complement(2972973..2973293) 1 NC_011312.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 2973293 metJ 6988774 metJ Aliivibrio salmonicida LFI1238 transcriptional repressor protein MetJ YP_002264082.1 2972973 R 316275 CDS YP_002264083.1 209696153 6988796 2973481..2974647 1 NC_011312.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 2974647 metB 6988796 metB Aliivibrio salmonicida LFI1238 cystathionine gamma-synthase YP_002264083.1 2973481 D 316275 CDS YP_002264084.1 209696154 6988788 2974647..2977067 1 NC_011312.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 2977067 metL 6988788 metL Aliivibrio salmonicida LFI1238 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_002264084.1 2974647 D 316275 CDS YP_002264085.1 209696155 6988798 2977409..2978383 1 NC_011312.1 activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 2978383 leuO 6988798 leuO Aliivibrio salmonicida LFI1238 leucine transcriptional activator YP_002264085.1 2977409 D 316275 CDS YP_002264086.1 209696156 6988747 2978631..2980466 1 NC_011312.1 AMP-binding protein 2980466 6988747 VSAL_I2750 Aliivibrio salmonicida LFI1238 AMP-binding protein YP_002264086.1 2978631 D 316275 CDS YP_002264087.1 209696157 6987905 2980853..2981167 1 NC_011312.1 transposase 2981167 6987905 VSAL_I2751 Aliivibrio salmonicida LFI1238 transposase YP_002264087.1 2980853 D 316275 CDS YP_002264088.1 209696158 6987906 2981164..2981511 1 NC_011312.1 transposase 2981511 6987906 VSAL_I2752 Aliivibrio salmonicida LFI1238 transposase YP_002264088.1 2981164 D 316275 CDS YP_002264089.1 209696159 6987907 2981583..2983070 1 NC_011312.1 transposase 2983070 6987907 VSAL_I2753 Aliivibrio salmonicida LFI1238 transposase YP_002264089.1 2981583 D 316275 CDS YP_002264090.1 209696160 6987908 complement(2983188..2985818) 1 NC_011312.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 2985818 ppc 6987908 ppc Aliivibrio salmonicida LFI1238 phosphoenolpyruvate carboxylase YP_002264090.1 2983188 R 316275 CDS YP_002264091.1 209696161 6988999 complement(2985996..2987132) 1 NC_011312.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 2987132 argE 6988999 argE Aliivibrio salmonicida LFI1238 acetylornithine deacetylase YP_002264091.1 2985996 R 316275 CDS YP_002264092.1 209696162 6988251 2987339..2988343 1 NC_011312.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 2988343 argC 6988251 argC Aliivibrio salmonicida LFI1238 N-acetyl-gamma-glutamyl-phosphate reductase YP_002264092.1 2987339 D 316275 CDS YP_002264093.1 209696163 6988250 2988347..2989138 1 NC_011312.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 2989138 argB 6988250 argB Aliivibrio salmonicida LFI1238 acetylglutamate kinase YP_002264093.1 2988347 D 316275 CDS YP_002264094.1 209696164 6988249 2989206..2990417 1 NC_011312.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 2990417 argG 6988249 argG Aliivibrio salmonicida LFI1238 argininosuccinate synthase YP_002264094.1 2989206 D 316275 CDS YP_002264095.1 209696165 6988252 complement(2990544..2992031) 1 NC_011312.1 transposase 2992031 6988252 VSAL_I2759 Aliivibrio salmonicida LFI1238 transposase YP_002264095.1 2990544 R 316275 CDS YP_002264096.1 209696166 6987909 complement(2992103..2992450) 1 NC_011312.1 transposase 2992450 6987909 VSAL_I2760 Aliivibrio salmonicida LFI1238 transposase YP_002264096.1 2992103 R 316275 CDS YP_002264097.1 209696167 6987910 complement(2992447..2992761) 1 NC_011312.1 transposase 2992761 6987910 VSAL_I2761 Aliivibrio salmonicida LFI1238 transposase YP_002264097.1 2992447 R 316275 CDS YP_002264098.1 209696168 6987911 complement(2992910..2993806) 1 NC_011312.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 2993806 metF 6987911 metF Aliivibrio salmonicida LFI1238 5,10-methylenetetrahydrofolate reductase YP_002264098.1 2992910 R 316275 CDS YP_002264099.1 209696169 6988792 complement(2994101..2994550) 1 NC_011312.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2994550 rplI 6988792 rplI Aliivibrio salmonicida LFI1238 50S ribosomal protein L9 YP_002264099.1 2994101 R 316275 CDS YP_002264100.1 209696170 6989152 complement(2994591..2994818) 1 NC_011312.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 2994818 rpsR 6989152 rpsR Aliivibrio salmonicida LFI1238 30S ribosomal protein S18 YP_002264100.1 2994591 R 316275 CDS YP_002264101.1 209696171 6989205 complement(2994834..2995136) 1 NC_011312.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 2995136 priB 6989205 priB Aliivibrio salmonicida LFI1238 primosomal replication protein N YP_002264101.1 2994834 R 316275 CDS YP_002264102.1 209696172 6989007 complement(2995145..2995525) 1 NC_011312.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2995525 rpsF 6989007 rpsF Aliivibrio salmonicida LFI1238 30S ribosomal protein S6 YP_002264102.1 2995145 R 316275 CDS YP_002264103.1 209696173 6989193 complement(2995758..2996501) 1 NC_011312.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 2996501 rlmB 6989193 rlmB Aliivibrio salmonicida LFI1238 23S rRNA (guanosine-2'-O-)-methyltransferase YP_002264103.1 2995758 R 316275 CDS YP_002264104.1 209696174 6989107 complement(2996572..2999073) 1 NC_011312.1 ribonuclease R 2999073 rnr 6989107 rnr Aliivibrio salmonicida LFI1238 ribonuclease R YP_002264104.1 2996572 R 316275 CDS YP_002264105.1 209696175 6989140 complement(2999153..2999578) 1 NC_011312.1 negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 2999578 6989140 VSAL_I2769 Aliivibrio salmonicida LFI1238 transcriptional repressor NsrR YP_002264105.1 2999153 R 316275 CDS YP_002264106.1 209696176 6987912 2999713..3000897 1 NC_011312.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 3000897 hmp 6987912 hmp Aliivibrio salmonicida LFI1238 nitric oxide dioxygenase YP_002264106.1 2999713 D 316275 CDS YP_002264107.1 209696177 6988674 complement(3000998..3001630) 1 NC_011312.1 sodium-type polar flagellar protein MotX 3001630 motX 6988674 motX Aliivibrio salmonicida LFI1238 sodium-type polar flagellar protein MotX YP_002264107.1 3000998 R 316275 CDS YP_002264108.1 209696178 6988823 complement(3001857..3003173) 1 NC_011312.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3003173 purA 6988823 purA Aliivibrio salmonicida LFI1238 adenylosuccinate synthetase YP_002264108.1 3001857 R 316275 CDS YP_002264109.1 209696179 6989034 complement(3003352..3003537) 1 NC_011312.1 hypothetical protein 3003537 6989034 VSAL_I2773 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264109.1 3003352 R 316275 CDS YP_002264110.1 209696180 6987913 complement(3003625..3004509) 1 NC_011312.1 HflC protein 3004509 hflC 6987913 hflC Aliivibrio salmonicida LFI1238 HflC protein YP_002264110.1 3003625 R 316275 CDS YP_002264111.1 209696181 6988654 complement(3004512..3005735) 1 NC_011312.1 HflK protein 3005735 hflK 6988654 hflK Aliivibrio salmonicida LFI1238 HflK protein YP_002264111.1 3004512 R 316275 CDS YP_002264112.1 209696182 6988655 complement(3005754..3007073) 1 NC_011312.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 3007073 hflX 6988655 hflX Aliivibrio salmonicida LFI1238 GTPase HflX YP_002264112.1 3005754 R 316275 CDS YP_002264113.1 209696183 6988656 complement(3007118..3007384) 1 NC_011312.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 3007384 hfq 6988656 hfq Aliivibrio salmonicida LFI1238 RNA-binding protein Hfq YP_002264113.1 3007118 R 316275 CDS YP_002264114.1 209696184 6988657 complement(3007479..3008420) 1 NC_011312.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 3008420 miaA 6988657 miaA Aliivibrio salmonicida LFI1238 tRNA delta(2)-isopentenylpyrophosphate transferase YP_002264114.1 3007479 R 316275 CDS YP_002264115.1 209696185 6988803 complement(3008413..3010371) 1 NC_011312.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 3010371 mutL 6988803 mutL Aliivibrio salmonicida LFI1238 DNA mismatch repair protein YP_002264115.1 3008413 R 316275 CDS YP_002264116.1 209696186 6988867 complement(3010386..3012125) 1 NC_011312.1 N-acetylmuramoyl-L-alanine amidase 3012125 amiB 6988867 amiB Aliivibrio salmonicida LFI1238 N-acetylmuramoyl-L-alanine amidase YP_002264116.1 3010386 R 316275 CDS YP_002264117.1 209696187 6988232 complement(3012119..3012583) 1 NC_011312.1 hypothetical protein 3012583 6988232 VSAL_I2781 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264117.1 3012119 R 316275 CDS YP_002264118.1 209696188 6987914 3012804..3013922 1 NC_011312.1 ferredoxin, 4Fe-4S binding protein 3013922 6987914 VSAL_I2782 Aliivibrio salmonicida LFI1238 ferredoxin, 4Fe-4S binding protein YP_002264118.1 3012804 D 316275 CDS YP_002264119.1 209696189 6988190 complement(3015920..3016465) 1 NC_011312.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 3016465 orn 6988190 orn Aliivibrio salmonicida LFI1238 oligoribonuclease YP_002264119.1 3015920 R 316275 CDS YP_002264120.1 209696190 6988938 3016564..3017619 1 NC_011312.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3017619 6988938 VSAL_I2784 Aliivibrio salmonicida LFI1238 ribosome-associated GTPase YP_002264120.1 3016564 D 316275 CDS YP_002264121.1 209696191 6987916 3017678..3018541 1 NC_011312.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3018541 psd 6987916 psd Aliivibrio salmonicida LFI1238 phosphatidylserine decarboxylase YP_002264121.1 3017678 D 316275 CDS YP_002264122.1 209696192 6989018 3018652..3019614 1 NC_011312.1 Possible alternative translational start site after codon 23; integral membrane protein 3019614 6989018 VSAL_I2786 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002264122.1 3018652 D 316275 CDS YP_002264123.1 209696193 6987917 complement(3019655..3020641) 1 NC_011312.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 3020641 6987917 VSAL_I2787 Aliivibrio salmonicida LFI1238 lysyl-tRNA synthetase YP_002264123.1 3019655 R 316275 CDS YP_002264124.1 209696194 6987918 3020995..3022848 1 NC_011312.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 3022848 6987918 VSAL_I2788 Aliivibrio salmonicida LFI1238 fumarate reductase flavoprotein subunit YP_002264124.1 3020995 D 316275 CDS YP_002264125.1 209696195 6987919 3022848..3023591 1 NC_011312.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 3023591 frdB 6987919 frdB Aliivibrio salmonicida LFI1238 fumarate reductase iron-sulfur subunit YP_002264125.1 3022848 D 316275 CDS YP_002264126.1 209696196 6988560 3023594..3023977 1 NC_011312.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 3023977 frdC 6988560 frdC Aliivibrio salmonicida LFI1238 fumarate reductase subunit C YP_002264126.1 3023594 D 316275 CDS YP_002264127.1 209696197 6988561 3023989..3024351 1 NC_011312.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 3024351 frdD 6988561 frdD Aliivibrio salmonicida LFI1238 fumarate reductase subunit D YP_002264127.1 3023989 D 316275 CDS YP_002264128.1 209696198 6988562 complement(3024543..3025109) 1 NC_011312.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 3025109 efp 6988562 efp Aliivibrio salmonicida LFI1238 elongation factor P YP_002264128.1 3024543 R 316275 CDS YP_002264129.1 209696199 6988438 3025142..3026164 1 NC_011312.1 Similar to Clostridium subterminale L-lysine 2,3-aminomutase KamA UniProt:Q9XBQ8 (416 aa) fasta scores: E()=3.9e-30, 33.746% id in 323 aa; hypothetical protein 3026164 6988438 VSAL_I2793 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264129.1 3025142 D 316275 CDS YP_002264130.1 209696200 6987920 complement(3026252..3027214) 1 NC_011312.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 3027214 pfkA 6987920 pfkA Aliivibrio salmonicida LFI1238 6-phosphofructokinase YP_002264130.1 3026252 R 316275 CDS YP_002264131.1 209696201 6988961 complement(3027433..3028338) 1 NC_011312.1 member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F 3028338 fieF 6988961 fieF Aliivibrio salmonicida LFI1238 ferrous iron efflux protein F YP_002264131.1 3027433 R 316275 CDS YP_002264132.1 209696202 6988496 complement(3028498..3029004) 1 NC_011312.1 Similar to Escherichia coli Periplasmic protein CpxP UniProt:P0AE85 (166 aa) fasta scores: E()=5.9e-05, 36.842% id in 114 aa; periplasmic protein CpxP 3029004 6988496 VSAL_I2796 Aliivibrio salmonicida LFI1238 periplasmic protein CpxP YP_002264132.1 3028498 R 316275 CDS YP_002264133.1 209696203 6987921 3029199..3029882 1 NC_011312.1 CpxR family transcriptional regulator 3029882 cpxR 6987921 cpxR Aliivibrio salmonicida LFI1238 CpxR family transcriptional regulator YP_002264133.1 3029199 D 316275 CDS YP_002264134.1 209696204 6988348 3029888..3031276 1 NC_011312.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 3031276 cpxA 6988348 cpxA Aliivibrio salmonicida LFI1238 two-component sensor protein YP_002264134.1 3029888 D 316275 CDS YP_002264135.1 209696205 6988347 3031372..3031851 1 NC_011312.1 Similar to Escherichia coli Hypothetical tRNA/rRNA methyltransferase YibK UniProt:P0AGJ7 (157 aa) fasta scores: E()=2.7e-36, 60.377% id in 159 aa; tRNA/rRNA methyltransferase 3031851 yibK 6988347 yibK Aliivibrio salmonicida LFI1238 tRNA/rRNA methyltransferase YP_002264135.1 3031372 D 316275 CDS YP_002264136.1 209696206 6989437 complement(3031953..3032774) 1 NC_011312.1 catalyzes the O-acetylation of serine; serine acetyltransferase 3032774 cysE 6989437 cysE Aliivibrio salmonicida LFI1238 serine acetyltransferase YP_002264136.1 3031953 R 316275 CDS YP_002264137.1 209696207 6988374 complement(3032793..3033824) 1 NC_011312.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3033824 gpsA 6988374 gpsA Aliivibrio salmonicida LFI1238 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_002264137.1 3032793 R 316275 CDS YP_002264138.1 209696208 6988620 complement(3033990..3034472) 1 NC_011312.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be to SecA; preprotein translocase subunit SecB 3034472 secB 6988620 secB Aliivibrio salmonicida LFI1238 preprotein translocase subunit SecB YP_002264138.1 3033990 R 316275 CDS YP_002264139.1 209696209 6989230 complement(3034600..3035037) 1 NC_011312.1 hypothetical protein 3035037 6989230 VSAL_I2803 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264139.1 3034600 R 316275 CDS YP_002264140.1 209696210 6987922 3035259..3036404 1 NC_011312.1 peptidase 3036404 6987922 VSAL_I2804 Aliivibrio salmonicida LFI1238 peptidase YP_002264140.1 3035259 D 316275 CDS YP_002264141.1 209696211 6987923 complement(3036485..3036988) 1 NC_011312.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 3036988 fxsA 6987923 fxsA Aliivibrio salmonicida LFI1238 FxsA protein YP_002264141.1 3036485 R 316275 CDS YP_002264142.1 209696212 6988579 3037403..3038851 1 NC_011312.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 3038851 aspA 6988579 aspA Aliivibrio salmonicida LFI1238 aspartate ammonia-lyase YP_002264142.1 3037403 D 316275 CDS YP_002264143.1 209696213 6988272 3039055..3039369 1 NC_011312.1 transposase 3039369 6988272 VSAL_I2807 Aliivibrio salmonicida LFI1238 transposase YP_002264143.1 3039055 D 316275 CDS YP_002264144.1 209696214 6987924 3039366..3039713 1 NC_011312.1 transposase 3039713 6987924 VSAL_I2808 Aliivibrio salmonicida LFI1238 transposase YP_002264144.1 3039366 D 316275 CDS YP_002264145.1 209696215 6988394 3042841..3044715 1 NC_011312.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 3044715 dipZ 6988394 dipZ Aliivibrio salmonicida LFI1238 thiol:disulfide interchange protein YP_002264145.1 3042841 D 316275 CDS YP_002264146.1 209696216 6988426 3044823..3045623 1 NC_011312.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 3045623 nagB 6988426 nagB Aliivibrio salmonicida LFI1238 glucosamine-6-phosphate deaminase YP_002264146.1 3044823 D 316275 CDS YP_002264147.1 209696217 6988878 3046322..3048274 1 NC_011312.1 PTS system mannitol-specific transporter subunit EIICBA 3048274 mtlA 6988878 mtlA Aliivibrio salmonicida LFI1238 PTS system mannitol-specific transporter subunit EIICBA YP_002264147.1 3046322 D 316275 CDS YP_002264148.1 209696218 6988854 3048353..3049501 1 NC_011312.1 mannitol-1-phosphate 5-dehydrogenase 3049501 mtlD 6988854 mtlD Aliivibrio salmonicida LFI1238 mannitol-1-phosphate 5-dehydrogenase YP_002264148.1 3048353 D 316275 CDS YP_002264149.1 209696219 6988855 3049551..3050081 1 NC_011312.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 3050081 mtlR 6988855 mtlR Aliivibrio salmonicida LFI1238 mannitol repressor protein YP_002264149.1 3049551 D 316275 CDS YP_002264150.1 209696220 6988856 complement(3050102..3051352) 1 NC_011312.1 MFS transporter 3051352 6988856 VSAL_I2816 Aliivibrio salmonicida LFI1238 MFS transporter YP_002264150.1 3050102 R 316275 CDS YP_002264151.1 209696221 6987927 complement(3051377..3051874) 1 NC_011312.1 hypothetical protein 3051874 6987927 VSAL_I2817 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264151.1 3051377 R 316275 CDS YP_002264152.1 209696222 6987928 complement(3051892..3052893) 1 NC_011312.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 3052893 gap 6987928 gap Aliivibrio salmonicida LFI1238 glyceraldehyde-3-phosphate dehydrogenase YP_002264152.1 3051892 R 316275 CDS YP_002264153.1 209696223 6988584 complement(3052910..3053239) 1 NC_011312.1 Expression may be regulated by Fur; ArsR family transcriptional regulator 3053239 arsR 6988584 arsR Aliivibrio salmonicida LFI1238 ArsR family transcriptional regulator YP_002264153.1 3052910 R 316275 CDS YP_002264154.1 209696224 6988266 3053485..3054483 1 NC_011312.1 hypothetical protein 3054483 6988266 VSAL_I2820 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264154.1 3053485 D 316275 CDS YP_002264155.1 209696225 6987929 3054683..3055912 1 NC_011312.1 NADH dehydrogenase 3055912 ndh 6987929 ndh Aliivibrio salmonicida LFI1238 NADH dehydrogenase YP_002264155.1 3054683 D 316275 CDS YP_002264156.1 209696226 6988887 complement(3055981..3057813) 1 NC_011312.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 3057813 glmS 6988887 glmS Aliivibrio salmonicida LFI1238 glucosamine--fructose-6-phosphate aminotransferase YP_002264156.1 3055981 R 316275 CDS YP_002264157.1 209696227 6988591 complement(3057933..3058697) 1 NC_011312.1 Similar to Escherichia coli Glucitol operon repressor SrlR UniProt:P15082 (257 aa) fasta scores: E()=4.4e-28, 44.130% id in 247 aa; glucitol operon repressor 3058697 6988591 VSAL_I2823 Aliivibrio salmonicida LFI1238 glucitol operon repressor YP_002264157.1 3057933 R 316275 CDS YP_002264158.1 209696228 6987930 3058924..3059553 1 NC_011312.1 LuxR family transcriptional regulator 3059553 6987930 VSAL_I2824 Aliivibrio salmonicida LFI1238 LuxR family transcriptional regulator YP_002264158.1 3058924 D 316275 CDS YP_002264159.1 209696229 6987931 3059641..3060264 1 NC_011312.1 integral membrane protein, MarC family 3060264 6987931 VSAL_I2825 Aliivibrio salmonicida LFI1238 integral membrane protein, MarC family YP_002264159.1 3059641 D 316275 CDS YP_002264160.1 209696230 6987932 complement(3060371..3061696) 1 NC_011312.1 transposase 3061696 6987932 VSAL_I2826 Aliivibrio salmonicida LFI1238 transposase YP_002264160.1 3060371 R 316275 CDS YP_002264161.1 209696231 6987933 3061810..3062151 1 NC_011312.1 Similar to Vibrio fischeri Hypothetical protein UniProt:Q5E275 (88 aa) fasta scores: E()=2.9e-27, 86.364% id in 88 aa. Possible alternative translational start site after codon 25; hypothetical protein 3062151 6987933 VSAL_I2827 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264161.1 3061810 D 316275 CDS YP_002264162.1 209696232 6987934 3062162..3063865 1 NC_011312.1 sodium/solute symporter 3063865 6987934 VSAL_I2828 Aliivibrio salmonicida LFI1238 sodium/solute symporter YP_002264162.1 3062162 D 316275 CDS YP_002264163.1 209696233 6987935 complement(3063960..3067406) 1 NC_011312.1 membrane associated response regulator, histidine kinase 3067406 6987935 VSAL_I2829 Aliivibrio salmonicida LFI1238 membrane associated response regulator, histidine kinase YP_002264163.1 3063960 R 316275 CDS YP_002264164.1 209696234 6987936 complement(3067539..3068720) 1 NC_011312.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter 3068720 6987936 VSAL_I2830 Aliivibrio salmonicida LFI1238 3-phenylpropionic acid transporter YP_002264164.1 3067539 R 316275 CDS YP_002264165.1 209696235 6987937 3068890..3070722 1 NC_011312.1 nucleotidyltransferases 3070722 6987937 VSAL_I2831 Aliivibrio salmonicida LFI1238 nucleotidyltransferases YP_002264165.1 3068890 D 316275 CDS YP_002264166.1 209696236 6987938 3070724..3071356 1 NC_011312.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 3071356 6987938 VSAL_I2832 Aliivibrio salmonicida LFI1238 DNA polymerase III subunit epsilon YP_002264166.1 3070724 D 316275 CDS YP_002264167.1 209696237 6987939 3071562..3073511 1 NC_011312.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 3073511 acs 6987939 acs Aliivibrio salmonicida LFI1238 acetyl-CoA synthetase YP_002264167.1 3071562 D 316275 CDS YP_002264168.1 209696238 6988221 3073970..3074419 1 NC_011312.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3074419 aroQ 6988221 aroQ Aliivibrio salmonicida LFI1238 3-dehydroquinate dehydratase YP_002264168.1 3073970 D 316275 CDS YP_002264169.1 209696239 6988265 3074450..3074905 1 NC_011312.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3074905 accB 6988265 accB Aliivibrio salmonicida LFI1238 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_002264169.1 3074450 D 316275 CDS YP_002264170.1 209696240 6988210 3074918..3076261 1 NC_011312.1 biotin carboxylase (acetyl-CoA carboxylase subunit A) 3076261 accC 6988210 accC Aliivibrio salmonicida LFI1238 biotin carboxylase (acetyl-CoA carboxylase subunit A) YP_002264170.1 3074918 D 316275 CDS YP_002264171.1 209696241 6988211 3076378..3077262 1 NC_011312.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3077262 prmA 6988211 prmA Aliivibrio salmonicida LFI1238 50S ribosomal protein L11 methyltransferase YP_002264171.1 3076378 D 316275 CDS YP_002264172.1 209696242 6989010 3077458..3078426 1 NC_011312.1 tRNA-dihydrouridine synthase B 3078426 dusB 6989010 dusB Aliivibrio salmonicida LFI1238 tRNA-dihydrouridine synthase B YP_002264172.1 3077458 D 316275 CDS YP_002264173.1 209696243 6988432 3078449..3078745 1 NC_011312.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3078745 fis 6988432 fis Aliivibrio salmonicida LFI1238 DNA-binding protein Fis YP_002264173.1 3078449 D 316275 CDS YP_002264174.1 209696244 6988497 complement(3078885..3079229) 1 NC_011312.1 hypothetical protein 3079229 6988497 VSAL_I2840 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264174.1 3078885 R 316275 CDS YP_002264175.1 209696245 6987940 complement(3079278..3079697) 1 NC_011312.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; transcriptional regulator 3079697 zntR 6987940 zntR Aliivibrio salmonicida LFI1238 transcriptional regulator YP_002264175.1 3079278 R 316275 CDS YP_002264176.1 209696246 6987941 3079982..3081574 1 NC_011312.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3081574 purH 6987941 purH Aliivibrio salmonicida LFI1238 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_002264176.1 3079982 D 316275 CDS YP_002264177.1 209696247 6989039 3081756..3083048 1 NC_011312.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 3083048 purD 6989039 purD Aliivibrio salmonicida LFI1238 phosphoribosylamine--glycine ligase YP_002264177.1 3081756 D 316275 CDS YP_002264178.1 209696248 6989036 3083164..3084489 1 NC_011312.1 transposase 3084489 6989036 VSAL_I2844 Aliivibrio salmonicida LFI1238 transposase YP_002264178.1 3083164 D 316275 CDS YP_002264179.1 209696249 6987942 complement(3084535..3085239) 1 NC_011312.1 lipoprotein 3085239 6987942 VSAL_I2845 Aliivibrio salmonicida LFI1238 lipoprotein YP_002264179.1 3084535 R 316275 CDS YP_002264180.1 209696250 6987943 complement(3085279..3085551) 1 NC_011312.1 DNA-binding protein HU-alpha 3085551 hupA 6987943 hupA Aliivibrio salmonicida LFI1238 DNA-binding protein HU-alpha YP_002264180.1 3085279 R 316275 CDS YP_002264181.1 209696251 6988690 3085774..3086835 1 NC_011312.1 Expression may be regulated by Fur; modulator of ion transport 3086835 6988690 VSAL_I2847 Aliivibrio salmonicida LFI1238 modulator of ion transport YP_002264181.1 3085774 D 316275 CDS YP_002264182.1 209696252 6987944 complement(3086932..3087525) 1 NC_011312.1 hypothetical protein 3087525 6987944 VSAL_I2848 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264182.1 3086932 R 316275 CDS YP_002264183.1 209696253 6987945 3087597..3088511 1 NC_011312.1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3088511 6987945 VSAL_I2849 Aliivibrio salmonicida LFI1238 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_002264183.1 3087597 D 316275 CDS YP_002264184.1 209696254 6987946 complement(3088552..3089007) 1 NC_011312.1 hypothetical protein 3089007 6987946 VSAL_I2850 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264184.1 3088552 R 316275 CDS YP_002264185.1 209696255 6987947 complement(3089204..3090271) 1 NC_011312.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 3090271 hemE 6987947 hemE Aliivibrio salmonicida LFI1238 uroporphyrinogen decarboxylase YP_002264185.1 3089204 R 316275 CDS YP_002264186.1 209696256 6988921 3091004..3092197 1 NC_011312.1 transposase 3092197 6988921 VSAL_I2853 Aliivibrio salmonicida LFI1238 transposase YP_002264186.1 3091004 D 316275 CDS YP_002264187.1 209696257 6987948 3092825..3093334 1 NC_011312.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 3093334 6987948 VSAL_I2854 Aliivibrio salmonicida LFI1238 anti-RNA polymerase sigma 70 factor YP_002264187.1 3092825 D 316275 CDS YP_002264188.1 209696258 6987949 complement(3094233..3094634) 1 NC_011312.1 Similar to Escherichia coli Curli production assembly/transport component CsgF precursor UniProt:P0AE98 (138 aa) fasta scores: E()=1.4e-13, 39.516% id in 124 aa; assembly/transport component in curli production, CsgF precursor 3094634 csgF 6987949 csgF Aliivibrio salmonicida LFI1238 assembly/transport component in curli production, CsgF precursor YP_002264188.1 3094233 R 316275 CDS YP_002264189.1 209696259 6988354 complement(3094644..3095105) 1 NC_011312.1 Similar to Salmonella typhimurium Curli production assembly/transport component CsgE precursor UniProt:P0A200 (131 aa) fasta scores: E()=0.00033, 34.862% id in 109 aa; assembly/transport component in curli production, CsgE precursor 3095105 csgE 6988354 csgE Aliivibrio salmonicida LFI1238 assembly/transport component in curli production, CsgE precursor YP_002264189.1 3094644 R 316275 CDS YP_002264190.1 209696260 6988353 complement(3095102..3095749) 1 NC_011312.1 Similar to Escherichia coli CsgAB operon transcriptional regulatory protein UniProt:P52106 (216 aa) fasta scores: E()=8.1e-12, 38.217% id in 157 aa; CsgAB operon transcriptional regulatory protein 3095749 csgD 6988353 csgD Aliivibrio salmonicida LFI1238 CsgAB operon transcriptional regulatory protein YP_002264190.1 3095102 R 316275 CDS YP_002264191.1 209696261 6988352 complement(3096149..3096715) 1 NC_011312.1 transposase 3096715 6988352 VSAL_I2860 Aliivibrio salmonicida LFI1238 transposase YP_002264191.1 3096149 R 316275 CDS YP_002264192.1 209696262 6987950 complement(3096733..3097155) 1 NC_011312.1 transposase 3097155 6987950 VSAL_I2861 Aliivibrio salmonicida LFI1238 transposase YP_002264192.1 3096733 R 316275 CDS YP_002264193.1 209696263 6987952 complement(3097957..3098838) 1 NC_011312.1 transposase 3098838 6987952 VSAL_I2863 Aliivibrio salmonicida LFI1238 transposase YP_002264193.1 3097957 R 316275 CDS YP_002264194.1 209696264 6987953 3099392..3100336 1 NC_011312.1 curlin associated precursor, CsgA like 3100336 csgA 6987953 csgA Aliivibrio salmonicida LFI1238 curlin associated precursor, CsgA like YP_002264194.1 3099392 D 316275 CDS YP_002264195.1 209696265 6988351 complement(3100411..3104616) 1 NC_011312.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 3104616 rpoC 6988351 rpoC Aliivibrio salmonicida LFI1238 DNA-directed RNA polymerase subunit beta' YP_002264195.1 3100411 R 316275 CDS YP_002264196.1 209696266 6989181 complement(3104688..3108716) 1 NC_011312.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 3108716 rpoB 6989181 rpoB Aliivibrio salmonicida LFI1238 DNA-directed RNA polymerase subunit beta YP_002264196.1 3104688 R 316275 CDS YP_002264197.1 209696267 6989180 complement(3108948..3109313) 1 NC_011312.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 3109313 rplL 6989180 rplL Aliivibrio salmonicida LFI1238 50S ribosomal protein L7/L12 YP_002264197.1 3108948 R 316275 CDS YP_002264198.1 209696268 6989155 complement(3109369..3109863) 1 NC_011312.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 3109863 rplJ 6989155 rplJ Aliivibrio salmonicida LFI1238 50S ribosomal protein L10 YP_002264198.1 3109369 R 316275 CDS YP_002264199.1 209696269 6989153 complement(3110109..3110813) 1 NC_011312.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 3110813 rplA 6989153 rplA Aliivibrio salmonicida LFI1238 50S ribosomal protein L1 YP_002264199.1 3110109 R 316275 CDS YP_002264200.1 209696270 6989146 complement(3110818..3111246) 1 NC_011312.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 3111246 rplK 6989146 rplK Aliivibrio salmonicida LFI1238 50S ribosomal protein L11 YP_002264200.1 3110818 R 316275 CDS YP_002264201.1 209696271 6989154 complement(3111366..3111911) 1 NC_011312.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 3111911 nusG 6989154 nusG Aliivibrio salmonicida LFI1238 transcription antitermination protein NusG YP_002264201.1 3111366 R 316275 CDS YP_002264202.1 209696272 6988927 complement(3111924..3112301) 1 NC_011312.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 3112301 secE 6988927 secE Aliivibrio salmonicida LFI1238 preprotein translocase subunit SecE YP_002264202.1 3111924 R 316275 CDS YP_002264204.1 209696273 6988193 3114297..3115178 1 NC_011312.1 transposase 3115178 6988193 VSAL_I2874 Aliivibrio salmonicida LFI1238 transposase YP_002264204.1 3114297 D 316275 CDS YP_002264205.1 209696274 6987954 3115312..3116235 1 NC_011312.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 3116235 coaA 6987954 coaA Aliivibrio salmonicida LFI1238 pantothenate kinase YP_002264205.1 3115312 D 316275 CDS YP_002264206.1 209696275 6988337 complement(3116236..3117195) 1 NC_011312.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 3117195 birA 6988337 birA Aliivibrio salmonicida LFI1238 biotin--protein ligase YP_002264206.1 3116236 R 316275 CDS YP_002264207.1 209696276 6988292 complement(3117192..3118232) 1 NC_011312.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 3118232 murB 6988292 murB Aliivibrio salmonicida LFI1238 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002264207.1 3117192 R 316275 CDS YP_002264208.1 209696277 6988859 3118304..3118732 1 NC_011312.1 hypothetical protein 3118732 6988859 VSAL_I2878 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264208.1 3118304 D 316275 CDS YP_002264209.1 209696278 6987955 3118812..3120164 1 NC_011312.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 3120164 pssA 6987955 pssA Aliivibrio salmonicida LFI1238 phosphatidylserine synthase YP_002264209.1 3118812 D 316275 CDS YP_002264210.1 209696279 6989019 3120327..3120641 1 NC_011312.1 transposase 3120641 6989019 VSAL_I2880 Aliivibrio salmonicida LFI1238 transposase YP_002264210.1 3120327 D 316275 CDS YP_002264211.1 209696280 6987956 3120638..3120985 1 NC_011312.1 transposase 3120985 6987956 VSAL_I2881 Aliivibrio salmonicida LFI1238 transposase YP_002264211.1 3120638 D 316275 CDS YP_002264212.1 209696281 6987957 3121057..3122544 1 NC_011312.1 transposase 3122544 6987957 VSAL_I2882 Aliivibrio salmonicida LFI1238 transposase YP_002264212.1 3121057 D 316275 CDS YP_002264213.1 209696282 6988197 3128367..3128852 1 NC_011312.1 RNA binding protein 3128852 6988197 VSAL_I2883 Aliivibrio salmonicida LFI1238 RNA binding protein YP_002264213.1 3128367 D 316275 CDS YP_002264214.1 209696283 6987959 complement(3128806..3129603) 1 NC_011312.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 3129603 murI 6987959 murI Aliivibrio salmonicida LFI1238 glutamate racemase YP_002264214.1 3128806 R 316275 CDS YP_002264215.1 209696284 6988865 complement(3129664..3130335) 1 NC_011312.1 hypothetical protein 3130335 6988865 VSAL_I2885 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264215.1 3129664 R 316275 CDS YP_002264216.1 209696285 6987960 complement(3130386..3132242) 1 NC_011312.1 Similar to Salmonella typhimurium Vitamin B12 transporter BtuB precursor UniProt:P37409 (614 aa) fasta scores: E()=3.2e-56, 34.615% id in 624 aa; outer membrane associated TonB dependent receptor 3132242 6987960 VSAL_I2886 Aliivibrio salmonicida LFI1238 outer membrane associated TonB dependent receptor YP_002264216.1 3130386 R 316275 CDS YP_002264217.1 209696286 6988198 3132667..3133773 1 NC_011312.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 3133773 trmA 6988198 trmA Aliivibrio salmonicida LFI1238 tRNA (uracil-5-)-methyltransferase YP_002264217.1 3132667 D 316275 CDS YP_002264218.1 209696287 6989320 complement(3133846..3134220) 1 NC_011312.1 Similar to Escherichia coli Inner membrane protein YijD UniProt:P0AF40 (119 aa) fasta scores: E()=4.7e-11, 35.897% id in 117 aa; hypothetical protein 3134220 6989320 VSAL_I2888 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264218.1 3133846 R 316275 CDS YP_002264219.1 209696288 6987962 complement(3134265..3134963) 1 NC_011312.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 3134963 6987962 VSAL_I2889 Aliivibrio salmonicida LFI1238 DNA-binding transcriptional repressor FabR YP_002264219.1 3134265 R 316275 CDS YP_002264220.1 209696289 6987963 3135177..3136592 1 NC_011312.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 3136592 sthA 6987963 sthA Aliivibrio salmonicida LFI1238 soluble pyridine nucleotide transhydrogenase YP_002264220.1 3135177 D 316275 CDS YP_002264221.1 209696290 6989262 complement(3136681..3138012) 1 NC_011312.1 multidrug efflux pump 3138012 vcmD 6989262 vcmD Aliivibrio salmonicida LFI1238 multidrug efflux pump YP_002264221.1 3136681 R 316275 CDS YP_002264222.1 209696291 6989403 complement(3138095..3138907) 1 NC_011312.1 Expression may be regulated by Fur; hypothetical protein 3138907 6989403 VSAL_I2892 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264222.1 3138095 R 316275 CDS YP_002264223.1 209696292 6987964 complement(3138998..3139621) 1 NC_011312.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 3139621 lexA 6987964 lexA Aliivibrio salmonicida LFI1238 LexA repressor YP_002264223.1 3138998 R 316275 CDS YP_002264224.1 209696293 6988749 3139863..3142286 1 NC_011312.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 3142286 plsB 6988749 plsB Aliivibrio salmonicida LFI1238 glycerol-3-phosphate acyltransferase YP_002264224.1 3139863 D 316275 CDS YP_002264225.1 209696294 6988987 complement(3142377..3143234) 1 NC_011312.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 3143234 ubiA 6988987 ubiA Aliivibrio salmonicida LFI1238 4-hydroxybenzoate octaprenyltransferase YP_002264225.1 3142377 R 316275 CDS YP_002264226.1 209696295 6989347 complement(3143231..3143803) 1 NC_011312.1 Similar to Escherichia coli Chorismate--pyruvate lyase UbiC UniProt:P26602 (164 aa) fasta scores: E()=4.3e-12, 33.803% id in 142 aa; chorismate--pyruvate lyase 3143803 ubiC 6989347 ubiC Aliivibrio salmonicida LFI1238 chorismate--pyruvate lyase YP_002264226.1 3143231 R 316275 CDS YP_002264227.1 209696296 6989349 3143925..3144335 1 NC_011312.1 flagellar basal body-associated protein FliL-like protein 3144335 6989349 VSAL_I2897 Aliivibrio salmonicida LFI1238 flagellar basal body-associated protein FliL-like protein YP_002264227.1 3143925 D 316275 CDS YP_002264228.1 209696297 6987965 complement(3144389..3145228) 1 NC_011312.1 integral membrane protein 3145228 6987965 VSAL_I2898 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002264228.1 3144389 R 316275 CDS YP_002264229.1 209696298 6987966 complement(3145236..3145559) 1 NC_011312.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 3145559 glpE 6987966 glpE Aliivibrio salmonicida LFI1238 thiosulfate sulfurtransferase YP_002264229.1 3145236 R 316275 CDS YP_002264230.1 209696299 6988600 complement(3145988..3146848) 1 NC_011312.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 3146848 rpoH 6988600 rpoH Aliivibrio salmonicida LFI1238 RNA polymerase factor sigma-32 YP_002264230.1 3145988 R 316275 CDS YP_002264231.1 209696300 6989184 complement(3147076..3148029) 1 NC_011312.1 cell division protein FtsX 3148029 ftsX 6989184 ftsX Aliivibrio salmonicida LFI1238 cell division protein FtsX YP_002264231.1 3147076 R 316275 CDS YP_002264232.1 209696301 6988573 complement(3148022..3148690) 1 NC_011312.1 cell division ATP-binding protein FtsE 3148690 ftsE 6988573 ftsE Aliivibrio salmonicida LFI1238 cell division ATP-binding protein FtsE YP_002264232.1 3148022 R 316275 CDS YP_002264233.1 209696302 6988568 complement(3148694..3149926) 1 NC_011312.1 cell division protein FtsY 3149926 ftsY 6988568 ftsY Aliivibrio salmonicida LFI1238 cell division protein FtsY YP_002264233.1 3148694 R 316275 CDS YP_002264234.1 209696303 6988574 3149997..3150605 1 NC_011312.1 hypothetical protein 3150605 6988574 VSAL_I2904 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264234.1 3149997 D 316275 CDS YP_002264235.1 209696304 6987967 3150606..3150878 1 NC_011312.1 hypothetical protein 3150878 6987967 VSAL_I2905 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264235.1 3150606 D 316275 CDS YP_002264236.1 209696305 6987969 complement(3151679..3151921) 1 NC_011312.1 hypothetical protein 3151921 6987969 VSAL_I2907 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264236.1 3151679 R 316275 CDS YP_002264237.1 209696306 6987970 complement(3152793..3153158) 1 NC_011312.1 hypothetical protein 3153158 6987970 VSAL_I2908 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264237.1 3152793 R 316275 CDS YP_002264238.1 209696307 6987971 3153432..3153764 1 NC_011312.1 hypothetical protein 3153764 6987971 VSAL_I2909 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264238.1 3153432 D 316275 CDS YP_002264239.1 209696308 6987972 3153779..3155860 1 NC_011312.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3155860 recG 6987972 recG Aliivibrio salmonicida LFI1238 ATP-dependent DNA helicase RecG YP_002264239.1 3153779 D 316275 CDS YP_002264240.1 209696309 6989080 complement(3155939..3156523) 1 NC_011312.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 3156523 6989080 VSAL_I2911 Aliivibrio salmonicida LFI1238 DNA uptake protein YP_002264240.1 3155939 R 316275 CDS YP_002264241.1 209696310 6987973 complement(3156642..3157460) 1 NC_011312.1 protein CysQ 3157460 cysQ 6987973 cysQ Aliivibrio salmonicida LFI1238 protein CysQ YP_002264241.1 3156642 R 316275 CDS YP_002264242.1 209696311 6988381 complement(3157466..3158017) 1 NC_011312.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3158017 nudE 6988381 nudE Aliivibrio salmonicida LFI1238 ADP-ribose diphosphatase NudE YP_002264242.1 3157466 R 316275 CDS YP_002264243.1 209696312 6988922 complement(3158027..3158788) 1 NC_011312.1 general secretion pathway protein N 3158788 exeN 6988922 exeN Aliivibrio salmonicida LFI1238 general secretion pathway protein N YP_002264243.1 3158027 R 316275 CDS YP_002264244.1 209696313 6988460 complement(3158785..3159276) 1 NC_011312.1 general secretion pathway protein M 3159276 epsM 6988460 epsM Aliivibrio salmonicida LFI1238 general secretion pathway protein M YP_002264244.1 3158785 R 316275 CDS YP_002264245.1 209696314 6988455 complement(3159276..3160511) 1 NC_011312.1 CDS contanins a rare Leucine start codon (CTG); general secretion pathway protein L 3160511 epsL 6988455 epsL Aliivibrio salmonicida LFI1238 general secretion pathway protein L YP_002264245.1 3159276 R 316275 CDS YP_002264246.1 209696315 6988454 complement(3160504..3161523) 1 NC_011312.1 general secretion pathway protein K 3161523 epsK 6988454 epsK Aliivibrio salmonicida LFI1238 general secretion pathway protein K YP_002264246.1 3160504 R 316275 CDS YP_002264247.1 209696316 6988453 complement(3161538..3162185) 1 NC_011312.1 general secretion pathway protein J 3162185 epsJ 6988453 epsJ Aliivibrio salmonicida LFI1238 general secretion pathway protein J YP_002264247.1 3161538 R 316275 CDS YP_002264248.1 209696317 6988452 complement(3162190..3162567) 1 NC_011312.1 general secretion pathway protein I 3162567 epsI 6988452 epsI Aliivibrio salmonicida LFI1238 general secretion pathway protein I YP_002264248.1 3162190 R 316275 CDS YP_002264249.1 209696318 6988451 complement(3162557..3163153) 1 NC_011312.1 general secretion pathway protein H 3163153 epsH 6988451 epsH Aliivibrio salmonicida LFI1238 general secretion pathway protein H YP_002264249.1 3162557 R 316275 CDS YP_002264250.1 209696319 6988450 complement(3163185..3163634) 1 NC_011312.1 general secretion pathway protein G 3163634 epsG 6988450 epsG Aliivibrio salmonicida LFI1238 general secretion pathway protein G YP_002264250.1 3163185 R 316275 CDS YP_002264251.1 209696320 6988449 complement(3163698..3164915) 1 NC_011312.1 general secretion pathway protein F 3164915 epsF 6988449 epsF Aliivibrio salmonicida LFI1238 general secretion pathway protein F YP_002264251.1 3163698 R 316275 CDS YP_002264252.1 209696321 6988448 complement(3164916..3166415) 1 NC_011312.1 general secretion pathway protein E 3166415 epsE 6988448 epsE Aliivibrio salmonicida LFI1238 general secretion pathway protein E YP_002264252.1 3164916 R 316275 CDS YP_002264253.1 209696322 6988447 complement(3166415..3168442) 1 NC_011312.1 general secretion pathway protein D 3168442 epsD 6988447 epsD Aliivibrio salmonicida LFI1238 general secretion pathway protein D YP_002264253.1 3166415 R 316275 CDS YP_002264254.1 209696323 6988446 complement(3168486..3169397) 1 NC_011312.1 general secretion pathway protein C 3169397 epsC 6988446 epsC Aliivibrio salmonicida LFI1238 general secretion pathway protein C YP_002264254.1 3168486 R 316275 CDS YP_002264255.1 209696324 6988445 3169675..3170076 1 NC_011312.1 heat shock protein 15 3170076 hslR 6988445 hslR Aliivibrio salmonicida LFI1238 heat shock protein 15 YP_002264255.1 3169675 D 316275 CDS YP_002264256.1 209696325 6988685 3170167..3171042 1 NC_011312.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 3171042 hslO 6988685 hslO Aliivibrio salmonicida LFI1238 Hsp33-like chaperonin YP_002264256.1 3170167 D 316275 CDS YP_002264257.1 209696326 6988684 3171402..3173027 1 NC_011312.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3173027 pckA 6988684 pckA Aliivibrio salmonicida LFI1238 phosphoenolpyruvate carboxykinase YP_002264257.1 3171402 D 316275 CDS YP_002264258.1 209696327 6988949 3173232..3175214 1 NC_011312.1 hypothetical protein 3175214 6988949 VSAL_I2929 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264258.1 3173232 D 316275 CDS YP_002264259.1 209696328 6987974 complement(3175273..3176493) 1 NC_011312.1 signaling protein 3176493 6987974 VSAL_I2930 Aliivibrio salmonicida LFI1238 signaling protein YP_002264259.1 3175273 R 316275 CDS YP_002264260.1 209696329 6987975 3176743..3177711 1 NC_011312.1 lysophospholipase L2 LypA 3177711 6987975 VSAL_I2931 Aliivibrio salmonicida LFI1238 lysophospholipase L2 LypA YP_002264260.1 3176743 D 316275 CDS YP_002264261.1 209696330 6987976 3177835..3178632 1 NC_011312.1 hypothetical protein 3178632 6987976 VSAL_I2932 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264261.1 3177835 D 316275 CDS YP_002264262.1 209696331 6987978 complement(3180276..3180623) 1 NC_011312.1 transposase 3180623 6987978 VSAL_I2934 Aliivibrio salmonicida LFI1238 transposase YP_002264262.1 3180276 R 316275 CDS YP_002264263.1 209696332 6987979 complement(3180620..3180934) 1 NC_011312.1 transposase 3180934 6987979 VSAL_I2935 Aliivibrio salmonicida LFI1238 transposase YP_002264263.1 3180620 R 316275 CDS YP_002264264.1 209696333 6987980 complement(3181638..3182537) 1 NC_011312.1 acyltransferase 3182537 6987980 VSAL_I2936 Aliivibrio salmonicida LFI1238 acyltransferase YP_002264264.1 3181638 R 316275 CDS YP_002264265.1 209696334 6987981 complement(3182875..3183309) 1 NC_011312.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 3183309 dtd 6987981 dtd Aliivibrio salmonicida LFI1238 D-tyrosyl-tRNA(Tyr) deacylase YP_002264265.1 3182875 R 316275 CDS YP_002264266.1 209696335 6988430 complement(3183281..3184213) 1 NC_011312.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 3184213 rbn 6988430 rbn Aliivibrio salmonicida LFI1238 ribonuclease BN YP_002264266.1 3183281 R 316275 CDS YP_002264267.1 209696336 6989066 complement(3184346..3186175) 1 NC_011312.1 Similar to Escherichia coli GTP-binding protein TypA/BipA (Tyrosine phosphorylated protein A) UniProt:P32132 (607 aa) fasta scores: E()=1.6e-162, 74.503% id in 604 aa. Expression may be stress-induced; elongation factor Tu, GTP binding domain 3186175 6989066 VSAL_I2939 Aliivibrio salmonicida LFI1238 elongation factor Tu, GTP binding domain YP_002264267.1 3184346 R 316275 CDS YP_002264268.1 209696337 6987982 3186733..3188142 1 NC_011312.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 3188142 glnA 6987982 glnA Aliivibrio salmonicida LFI1238 glutamine synthetase YP_002264268.1 3186733 D 316275 CDS YP_002264269.1 209696338 6988593 3188568..3188882 1 NC_011312.1 transposase 3188882 6988593 VSAL_I2941 Aliivibrio salmonicida LFI1238 transposase YP_002264269.1 3188568 D 316275 CDS YP_002264270.1 209696339 6987983 3188879..3189226 1 NC_011312.1 transposase 3189226 6987983 VSAL_I2942 Aliivibrio salmonicida LFI1238 transposase YP_002264270.1 3188879 D 316275 CDS YP_002264271.1 209696340 6987984 3189298..3190785 1 NC_011312.1 transposase 3190785 6987984 VSAL_I2943 Aliivibrio salmonicida LFI1238 transposase YP_002264271.1 3189298 D 316275 CDS YP_002264272.1 209696341 6987985 complement(3190919..3191380) 1 NC_011312.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 3191380 asnC 6987985 asnC Aliivibrio salmonicida LFI1238 DNA-binding transcriptional regulator AsnC YP_002264272.1 3190919 R 316275 CDS YP_002264273.1 209696342 6988270 3191536..3192318 1 NC_011312.1 hypothetical protein 3192318 6988270 VSAL_I2945 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264273.1 3191536 D 316275 CDS YP_002264274.1 209696343 6987986 complement(3192315..3192740) 1 NC_011312.1 universal stress protein A 3192740 uspA 6987986 uspA Aliivibrio salmonicida LFI1238 universal stress protein A YP_002264274.1 3192315 R 316275 CDS YP_002264275.1 209696344 6989360 3192947..3193474 1 NC_011312.1 ferritin-1 3193474 ftnA 6989360 ftnA Aliivibrio salmonicida LFI1238 ferritin-1 YP_002264275.1 3192947 D 316275 CDS YP_002264276.1 209696345 6988565 3193585..3193923 1 NC_011312.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 3193923 uspB 6988565 uspB Aliivibrio salmonicida LFI1238 universal stress protein UspB YP_002264276.1 3193585 D 316275 CDS YP_002264277.1 209696346 6989361 3193951..3195156 1 NC_011312.1 FAD dependent oxidoreductase 3195156 6989361 VSAL_I2949 Aliivibrio salmonicida LFI1238 FAD dependent oxidoreductase YP_002264277.1 3193951 D 316275 CDS YP_002264278.1 209696347 6987987 3197135..3197449 1 NC_011312.1 transposase 3197449 6987987 VSAL_I2951 Aliivibrio salmonicida LFI1238 transposase YP_002264278.1 3197135 D 316275 CDS YP_002264279.1 209696348 6987988 3197446..3197793 1 NC_011312.1 transposase 3197793 6987988 VSAL_I2952 Aliivibrio salmonicida LFI1238 transposase YP_002264279.1 3197446 D 316275 CDS YP_002264280.1 209696349 6987989 3197865..3199352 1 NC_011312.1 transposase 3199352 6987989 VSAL_I2953 Aliivibrio salmonicida LFI1238 transposase YP_002264280.1 3197865 D 316275 CDS YP_002264281.1 209696350 6987990 complement(3200094..3200681) 1 NC_011312.1 hypothetical protein 3200681 6987990 VSAL_I2954 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264281.1 3200094 R 316275 CDS YP_002264282.1 209696351 6987991 complement(3200681..3201700) 1 NC_011312.1 lipoprotein 3201700 6987991 VSAL_I2955 Aliivibrio salmonicida LFI1238 lipoprotein YP_002264282.1 3200681 R 316275 CDS YP_002264283.1 209696352 6987992 3201855..3202490 1 NC_011312.1 KHG/KDPG aldolase 3202490 eda 6987992 eda Aliivibrio salmonicida LFI1238 KHG/KDPG aldolase YP_002264283.1 3201855 D 316275 CDS YP_002264284.1 209696353 6987994 complement(3204396..3204743) 1 NC_011312.1 transposase 3204743 6987994 VSAL_I2959 Aliivibrio salmonicida LFI1238 transposase YP_002264284.1 3204396 R 316275 CDS YP_002264285.1 209696354 6987995 complement(3204740..3205054) 1 NC_011312.1 transposase 3205054 6987995 VSAL_I2960 Aliivibrio salmonicida LFI1238 transposase YP_002264285.1 3204740 R 316275 CDS YP_002264286.1 209696355 6987996 3205351..3205785 1 NC_011312.1 small heat shock protein 3205785 ibpA 6987996 ibpA Aliivibrio salmonicida LFI1238 small heat shock protein YP_002264286.1 3205351 D 316275 CDS YP_002264287.1 209696356 6988698 complement(3205841..3207166) 1 NC_011312.1 transposase 3207166 6988698 VSAL_I2962 Aliivibrio salmonicida LFI1238 transposase YP_002264287.1 3205841 R 316275 CDS YP_002264288.1 209696357 6987997 complement(3207539..3208786) 1 NC_011312.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3208786 avtA 6987997 avtA Aliivibrio salmonicida LFI1238 valine--pyruvate transaminase YP_002264288.1 3207539 R 316275 CDS YP_002264289.1 209696358 6988286 3209005..3209937 1 NC_011312.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 3209937 glyQ 6988286 glyQ Aliivibrio salmonicida LFI1238 glycyl-tRNA synthetase subunit alpha YP_002264289.1 3209005 D 316275 CDS YP_002264290.1 209696359 6988610 3209940..3212006 1 NC_011312.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 3212006 glyS 6988610 glyS Aliivibrio salmonicida LFI1238 glycyl-tRNA synthetase subunit beta YP_002264290.1 3209940 D 316275 CDS YP_002264291.1 209696360 6988611 3212151..3213815 1 NC_011312.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase 3213815 malS 6988611 malS Aliivibrio salmonicida LFI1238 periplasmic alpha-amylase YP_002264291.1 3212151 D 316275 CDS YP_002264292.1 209696361 6988776 3213954..3214214 1 NC_011312.1 hypothetical protein 3214214 6988776 VSAL_I2967 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264292.1 3213954 D 316275 CDS YP_002264293.1 209696362 6987998 complement(3214247..3214498) 1 NC_011312.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 3214498 6987998 VSAL_I2968 Aliivibrio salmonicida LFI1238 sulfur transfer protein SirA YP_002264293.1 3214247 R 316275 CDS YP_002264294.1 209696363 6987999 3214660..3215853 1 NC_011312.1 transposase 3215853 6987999 VSAL_I2969 Aliivibrio salmonicida LFI1238 transposase YP_002264294.1 3214660 D 316275 CDS YP_002264295.1 209696364 6988000 3216114..3216305 1 NC_011312.1 hypothetical protein 3216305 6988000 VSAL_I2970 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264295.1 3216114 D 316275 CDS YP_002264296.1 209696365 6988001 3216466..3217407 1 NC_011312.1 LysR family transcriptional regulator 3217407 6988001 VSAL_I2971 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002264296.1 3216466 D 316275 CDS YP_002264297.1 209696366 6988002 complement(3217530..3218510) 1 NC_011312.1 zinc-binding alcohol dehydrogenase 3218510 6988002 VSAL_I2972 Aliivibrio salmonicida LFI1238 zinc-binding alcohol dehydrogenase YP_002264297.1 3217530 R 316275 CDS YP_002264298.1 209696367 6988003 complement(3219285..3220448) 1 NC_011312.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 3220448 fadA 6988003 fadA Aliivibrio salmonicida LFI1238 3-ketoacyl-CoA thiolase YP_002264298.1 3219285 R 316275 CDS YP_002264299.1 209696368 6988472 complement(3220462..3222642) 1 NC_011312.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 3222642 fadB 6988472 fadB Aliivibrio salmonicida LFI1238 multifunctional fatty acid oxidation complex subunit alpha YP_002264299.1 3220462 R 316275 CDS YP_002264300.1 209696369 6988473 3222885..3223499 1 NC_011312.1 hypothetical protein 3223499 6988473 VSAL_I2975 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264300.1 3222885 D 316275 CDS YP_002264301.1 209696370 6988004 3223557..3225014 1 NC_011312.1 Trk system potassium uptake protein TrkH 3225014 trkH 6988004 trkH Aliivibrio salmonicida LFI1238 Trk system potassium uptake protein TrkH YP_002264301.1 3223557 D 316275 CDS YP_002264302.1 209696371 6989319 3225042..3225566 1 NC_011312.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 3225566 hemG 6989319 hemG Aliivibrio salmonicida LFI1238 protoporphyrinogen oxidase YP_002264302.1 3225042 D 316275 CDS YP_002264303.1 209696372 6988199 complement(3225765..3226106) 1 NC_011312.1 No significant database matches. Expression may be regulated by Fur; hypothetical protein 3226106 6988199 VSAL_I2978 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264303.1 3225765 R 316275 CDS YP_002264304.1 209696373 6988005 3226206..3228962 1 NC_011312.1 Zn-dependent peptidase 3228962 6988005 VSAL_I2979 Aliivibrio salmonicida LFI1238 Zn-dependent peptidase YP_002264304.1 3226206 D 316275 CDS YP_002264305.1 209696374 6988006 3229064..3229258 1 NC_011312.1 hypothetical protein 3229258 6988006 VSAL_I2980 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264305.1 3229064 D 316275 CDS YP_002264306.1 209696375 6988007 complement(3229350..3229730) 1 NC_011312.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 3229730 6988007 VSAL_I2981 Aliivibrio salmonicida LFI1238 camphor resistance protein CrcB YP_002264306.1 3229350 R 316275 CDS YP_002264307.1 209696376 6988008 3229912..3230334 1 NC_011312.1 hypothetical protein 3230334 6988008 VSAL_I2982 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264307.1 3229912 D 316275 CDS YP_002264308.1 209696377 6988200 3230776..3232722 1 NC_011312.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 3232722 thiC 6988200 thiC Aliivibrio salmonicida LFI1238 thiamine biosynthesis protein ThiC YP_002264308.1 3230776 D 316275 CDS YP_002264309.1 209696378 6989281 3232795..3233475 1 NC_011312.1 thiamine-phosphate pyrophosphorylase 3233475 thiE 6989281 thiE Aliivibrio salmonicida LFI1238 thiamine-phosphate pyrophosphorylase YP_002264309.1 3232795 D 316275 CDS YP_002264310.1 209696379 6989282 3233468..3234316 1 NC_011312.1 Possible alternative translational start site after codon 5; thiamine biosynthesis adenylyltransferase ThiF 3234316 thiF 6989282 thiF Aliivibrio salmonicida LFI1238 thiamine biosynthesis adenylyltransferase ThiF YP_002264310.1 3233468 D 316275 CDS YP_002264311.1 209696380 6989283 3234309..3234521 1 NC_011312.1 thiamine biosynthesis protein ThiS 3234521 thiS 6989283 thiS Aliivibrio salmonicida LFI1238 thiamine biosynthesis protein ThiS YP_002264311.1 3234309 D 316275 CDS YP_002264312.1 209696381 6989291 3234523..3235293 1 NC_011312.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 3235293 thiG 6989291 thiG Aliivibrio salmonicida LFI1238 thiazole synthase YP_002264312.1 3234523 D 316275 CDS YP_002264313.1 209696382 6989284 3235316..3236428 1 NC_011312.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 3236428 thiH 6989284 thiH Aliivibrio salmonicida LFI1238 thiamine biosynthesis protein ThiH YP_002264313.1 3235316 D 316275 CDS YP_002264314.1 209696383 6989285 complement(3236553..3238976) 1 NC_011312.1 beta-N-acetylhexosaminidase 3238976 6989285 VSAL_I2989 Aliivibrio salmonicida LFI1238 beta-N-acetylhexosaminidase YP_002264314.1 3236553 R 316275 CDS YP_002264315.1 209696384 6988010 complement(3239242..3241035) 1 NC_011312.1 metallopeptidase 3241035 6988010 VSAL_I2990 Aliivibrio salmonicida LFI1238 metallopeptidase YP_002264315.1 3239242 R 316275 CDS YP_002264316.1 209696385 6988011 complement(3241116..3242081) 1 NC_011312.1 Similar to Escherichia coli HTH-type transcriptional regulator YidZ UniProt:P31463 (319 aa) fasta scores: E()=6.7e-30, 32.595% id in 316 aa; LysR family transcriptional regulator 3242081 6988011 VSAL_I2991 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002264316.1 3241116 R 316275 CDS YP_002264317.1 209696386 6988012 3242186..3243391 1 NC_011312.1 Similar to Escherichia coli Multidrug resistance protein MdtL UniProt:P31462 (391 aa) fasta scores: E()=9.7e-26, 29.919% id in 371 aa; MFS transporter 3243391 6988012 VSAL_I2992 Aliivibrio salmonicida LFI1238 MFS transporter YP_002264317.1 3242186 D 316275 CDS YP_002264318.1 209696387 6988013 3243512..3243796 1 NC_011312.1 hypothetical protein 3243796 6988013 VSAL_I2993 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264318.1 3243512 D 316275 CDS YP_002264319.1 209696388 6988014 complement(3243867..3244778) 1 NC_011312.1 integral membrane protein 3244778 6988014 VSAL_I2994 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002264319.1 3243867 R 316275 CDS YP_002264320.1 209696389 6988015 3244906..3246426 1 NC_011312.1 Similar to Escherichia coli DNA recombination protein RmuC UniProt:P0AG71 (475 aa) fasta scores: E()=2.3e-78, 55.305% id in 443 aa. Lack of similarity at the N-terminus in comparison to other proteins; DNA recombination protein RumC 3246426 rmuC 6988015 rmuC Aliivibrio salmonicida LFI1238 DNA recombination protein RumC YP_002264320.1 3244906 D 316275 CDS YP_002264321.1 209696390 6989127 3246486..3247250 1 NC_011312.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 3247250 ubiE 6989127 ubiE Aliivibrio salmonicida LFI1238 ubiquinone/menaquinone biosynthesis methyltransferase YP_002264321.1 3246486 D 316275 CDS YP_002264322.1 209696391 6989351 3247263..3247886 1 NC_011312.1 hypothetical protein 3247886 6989351 VSAL_I2997 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264322.1 3247263 D 316275 CDS YP_002264323.1 209696392 6988016 3247883..3249514 1 NC_011312.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 3249514 ubiB 6988016 ubiB Aliivibrio salmonicida LFI1238 ubiquinone biosynthesis protein UbiB YP_002264323.1 3247883 D 316275 CDS YP_002264324.1 209696393 6989348 3249570..3249818 1 NC_011312.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 3249818 tatA 6989348 tatA Aliivibrio salmonicida LFI1238 twin arginine translocase protein A YP_002264324.1 3249570 D 316275 CDS YP_002264325.1 209696394 6989273 3249822..3250199 1 NC_011312.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 3250199 tatB 6989273 tatB Aliivibrio salmonicida LFI1238 sec-independent translocase YP_002264325.1 3249822 D 316275 CDS YP_002264326.1 209696395 6989274 3250202..3250957 1 NC_011312.1 sec-independent protein translocase protein TatC 3250957 tatC 6989274 tatC Aliivibrio salmonicida LFI1238 sec-independent protein translocase protein TatC YP_002264326.1 3250202 D 316275 CDS YP_002264327.1 209696396 6989275 3251158..3252039 1 NC_011312.1 transposase 3252039 6989275 VSAL_I3002 Aliivibrio salmonicida LFI1238 transposase YP_002264327.1 3251158 D 316275 CDS YP_002264328.1 209696397 6988359 complement(3253913..3254710) 1 NC_011312.1 TatD related DNase 3254710 6988359 VSAL_I3003 Aliivibrio salmonicida LFI1238 TatD related DNase YP_002264328.1 3253913 R 316275 CDS YP_002264329.1 209696398 6988018 3254843..3255859 1 NC_011312.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3255859 hemB 6988018 hemB Aliivibrio salmonicida LFI1238 delta-aminolevulinic acid dehydratase YP_002264329.1 3254843 D 316275 CDS YP_002264330.1 209696399 6988641 3256157..3256426 1 NC_011312.1 transposase 3256426 6988641 VSAL_I3005 Aliivibrio salmonicida LFI1238 transposase YP_002264330.1 3256157 D 316275 CDS YP_002264331.1 209696400 6988019 3256423..3256770 1 NC_011312.1 transposase 3256770 6988019 VSAL_I3006 Aliivibrio salmonicida LFI1238 transposase YP_002264331.1 3256423 D 316275 CDS YP_002264332.1 209696401 6988021 3258780..3259088 1 NC_011312.1 hypothetical protein 3259088 6988021 VSAL_I3008 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264332.1 3258780 D 316275 CDS YP_002264333.1 209696402 6988022 3259572..3260684 1 NC_011312.1 transposase 3260684 6988022 VSAL_I3009 Aliivibrio salmonicida LFI1238 transposase YP_002264333.1 3259572 D 316275 CDS YP_002264334.1 209696403 6988023 3260889..3261512 1 NC_011312.1 capsular polysaccharide biosynthesis protein NeuD 3261512 neuD 6988023 neuD Aliivibrio salmonicida LFI1238 capsular polysaccharide biosynthesis protein NeuD YP_002264334.1 3260889 D 316275 CDS YP_002264335.1 209696404 6988893 3261537..3262577 1 NC_011312.1 sialic acid synthase 3262577 neuB 6988893 neuB Aliivibrio salmonicida LFI1238 sialic acid synthase YP_002264335.1 3261537 D 316275 CDS YP_002264336.1 209696405 6988891 3262582..3263835 1 NC_011312.1 N-acylneuraminate cytidylyltransferase 3263835 neuA 6988891 neuA Aliivibrio salmonicida LFI1238 N-acylneuraminate cytidylyltransferase YP_002264336.1 3262582 D 316275 CDS YP_002264337.1 209696406 6988890 3263835..3265001 1 NC_011312.1 polysialic acid biosynthesis protein P7 3265001 neuC 6988890 neuC Aliivibrio salmonicida LFI1238 polysialic acid biosynthesis protein P7 YP_002264337.1 3263835 D 316275 CDS YP_002264338.1 209696407 6988892 3265006..3266274 1 NC_011312.1 exopolysaccharide biosynthesis protein 3266274 6988892 VSAL_I3014 Aliivibrio salmonicida LFI1238 exopolysaccharide biosynthesis protein YP_002264338.1 3265006 D 316275 CDS YP_002264339.1 209696408 6988024 3266267..3267163 1 NC_011312.1 hypothetical protein 3267163 6988024 VSAL_I3015 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264339.1 3266267 D 316275 CDS YP_002264340.1 209696409 6988025 3267304..3268269 1 NC_011312.1 Similar to Escherichia coli NeuNAc transferase WbwA UniProt:Q93NP9 (316 aa) fasta scores: E()=5.9e-14, 29.283% id in 321 aa; lipooligosaccharide sialyltransferase 3268269 6988025 VSAL_I3016 Aliivibrio salmonicida LFI1238 lipooligosaccharide sialyltransferase YP_002264340.1 3267304 D 316275 CDS YP_002264341.1 209696410 6988027 3269745..3270860 1 NC_011312.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 3270860 rmlB 6988027 rmlB Aliivibrio salmonicida LFI1238 dTDP-glucose-4,6-dehydratase YP_002264341.1 3269745 D 316275 CDS YP_002264342.1 209696411 6989120 3270860..3271747 1 NC_011312.1 glucose-1-phosphate thymidylyltransferase 3271747 rmlA 6989120 rmlA Aliivibrio salmonicida LFI1238 glucose-1-phosphate thymidylyltransferase YP_002264342.1 3270860 D 316275 CDS YP_002264343.1 209696412 6989117 3271747..3272628 1 NC_011312.1 dTDP-6-deoxy-l-mannose-dehydrogenase 3272628 rmlD 6989117 rmlD Aliivibrio salmonicida LFI1238 dTDP-6-deoxy-l-mannose-dehydrogenase YP_002264343.1 3271747 D 316275 CDS YP_002264344.1 209696413 6989126 3272633..3273187 1 NC_011312.1 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase 3273187 rmlC 6989126 rmlC Aliivibrio salmonicida LFI1238 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase YP_002264344.1 3272633 D 316275 CDS YP_002264345.1 209696414 6988029 3274828..3275706 1 NC_011312.1 Similar to Escherichia coli glycosyltransferase WcaN UniProt:Q9X4C3 (287 aa) fasta scores: E()=1.5e-10, 32.489% id in 237 aa; glycosyl transferase family protein 3275706 6988029 VSAL_I3024 Aliivibrio salmonicida LFI1238 glycosyl transferase family protein YP_002264345.1 3274828 D 316275 CDS YP_002264346.1 209696415 6988030 3275710..3276993 1 NC_011312.1 membrane protein 3276993 6988030 VSAL_I3025 Aliivibrio salmonicida LFI1238 membrane protein YP_002264346.1 3275710 D 316275 CDS YP_002264347.1 209696416 6988031 3277004..3277846 1 NC_011312.1 Similar to Shigella boydii glycosyltransferase WbsW UniProt:Q6QQW8 (280 aa) fasta scores: E()=2.9e-07, 29.515% id in 227 aa; glycosyltransferase 3277846 6988031 VSAL_I3026 Aliivibrio salmonicida LFI1238 glycosyltransferase YP_002264347.1 3277004 D 316275 CDS YP_002264348.1 209696417 6988032 3277843..3278556 1 NC_011312.1 glycosyltransferase 3278556 6988032 VSAL_I3027 Aliivibrio salmonicida LFI1238 glycosyltransferase YP_002264348.1 3277843 D 316275 CDS YP_002264349.1 209696418 6988033 3278556..3279128 1 NC_011312.1 Similar to Escherichia coli lipopolysaccharide biosynthesis O-acetyl transferase WbbJ UniProt:P37750 (196 aa) fasta scores: E()=2e-08, 35.000% id in 140 aa; lipopolysaccharide biosynthesis O-acetyl transferase 3279128 wbbJ 6988033 wbbJ Aliivibrio salmonicida LFI1238 lipopolysaccharide biosynthesis O-acetyl transferase YP_002264349.1 3278556 D 316275 CDS YP_002264350.1 209696419 6989415 3279138..3280274 1 NC_011312.1 NAD dependent epimerase/dehydratase 3280274 6989415 VSAL_I3029 Aliivibrio salmonicida LFI1238 NAD dependent epimerase/dehydratase YP_002264350.1 3279138 D 316275 CDS YP_002264351.1 209696420 6988034 3280302..3281303 1 NC_011312.1 Similar to Aeromonas hydrophila lipopolysaccharide biosynthesis protein UniProt:Q8KXE8 (332 aa) fasta scores: E()=1.8e-14, 28.763% id in 299 aa; lipopolysaccharide biosynthesis protein 3281303 6988034 VSAL_I3030 Aliivibrio salmonicida LFI1238 lipopolysaccharide biosynthesis protein YP_002264351.1 3280302 D 316275 CDS YP_002264352.1 209696421 6988035 3281316..3282278 1 NC_011312.1 Similar to Pseudomonas aeruginosa O-antigen biosynthetic gene WbjF UniProt:P95426 (314 aa) fasta scores: E()=2.4e-35, 42.321% id in 293 aa; O-antigen biosynthetic gene WbjF 3282278 6988035 VSAL_I3031 Aliivibrio salmonicida LFI1238 O-antigen biosynthetic gene WbjF YP_002264352.1 3281316 D 316275 CDS YP_002264353.1 209696422 6988036 3282275..3282823 1 NC_011312.1 galactosyl transferase, capsular polysaccharide synthesis enzyme 3282823 6988036 VSAL_I3032 Aliivibrio salmonicida LFI1238 galactosyl transferase, capsular polysaccharide synthesis enzyme YP_002264353.1 3282275 D 316275 CDS YP_002264354.1 209696423 6988037 3282949..3284883 1 NC_011312.1 Similar to Vibrio cholerae o139 epimerase/dehydratase UniProt:Q56627 (646 aa) fasta scores: E()=6.8e-152, 70.671% id in 641 aa; polysaccharide biosynthesis protein, epimerase/dehydratase 3284883 6988037 VSAL_I3033 Aliivibrio salmonicida LFI1238 polysaccharide biosynthesis protein, epimerase/dehydratase YP_002264354.1 3282949 D 316275 CDS YP_002264355.1 209696424 6988039 3285847..3287040 1 NC_011312.1 transposase 3287040 6988039 VSAL_I3035 Aliivibrio salmonicida LFI1238 transposase YP_002264355.1 3285847 D 316275 CDS YP_002264356.1 209696425 6988042 3289804..3290346 1 NC_011312.1 outer membrane protein 3290346 6988042 VSAL_I3038 Aliivibrio salmonicida LFI1238 outer membrane protein YP_002264356.1 3289804 D 316275 CDS YP_002264357.1 209696426 6988043 3290498..3291688 1 NC_011312.1 transposase 3291688 6988043 VSAL_I3039 Aliivibrio salmonicida LFI1238 transposase YP_002264357.1 3290498 D 316275 CDS YP_002264358.1 209696427 6988044 3291945..3292262 1 NC_011312.1 hypothetical protein 3292262 6988044 VSAL_I3040 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264358.1 3291945 D 316275 CDS YP_002264359.1 209696428 6988045 3292255..3292950 1 NC_011312.1 Similar to Edwardsiella ictaluri glycosyltransferase WbeiB UniProt:Q937Y0 (261 aa) fasta scores: E()=1.8e-11, 32.099% id in 243 aa; glycosyltransferase 3292950 6988045 VSAL_I3041 Aliivibrio salmonicida LFI1238 glycosyltransferase YP_002264359.1 3292255 D 316275 CDS YP_002264360.1 209696429 6988047 3294823..3295386 1 NC_011312.1 hypothetical protein 3295386 6988047 VSAL_I3043 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264360.1 3294823 D 316275 CDS YP_002264361.1 209696430 6988048 3295673..3296062 1 NC_011312.1 hypothetical protein 3296062 6988048 VSAL_I3044 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264361.1 3295673 D 316275 CDS YP_002264362.1 209696431 6988049 3296055..3296483 1 NC_011312.1 hypothetical protein 3296483 6988049 VSAL_I3045 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264362.1 3296055 D 316275 CDS YP_002264363.1 209696432 6988050 complement(3296797..3297645) 1 NC_011312.1 transposase 3297645 6988050 VSAL_I3046 Aliivibrio salmonicida LFI1238 transposase YP_002264363.1 3296797 R 316275 CDS YP_002264364.1 209696433 6988051 3298213..3302067 1 NC_011312.1 helicase 3302067 6988051 VSAL_I3047 Aliivibrio salmonicida LFI1238 helicase YP_002264364.1 3298213 D 316275 CDS YP_002264365.1 209696434 6988052 3302199..3303152 1 NC_011312.1 hypothetical protein 3303152 6988052 VSAL_I3048 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264365.1 3302199 D 316275 CDS YP_002264366.1 209696435 6988053 3303337..3304344 1 NC_011312.1 uridine diphosphate N-acetylgalactosamine 4-epimerase 3304344 gne 6988053 gne Aliivibrio salmonicida LFI1238 uridine diphosphate N-acetylgalactosamine 4-epimerase YP_002264366.1 3303337 D 316275 CDS YP_002264367.1 209696436 6988615 complement(3304661..3306211) 1 NC_011312.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3306211 gpmI 6988615 gpmI Aliivibrio salmonicida LFI1238 phosphoglyceromutase YP_002264367.1 3304661 R 316275 CDS YP_002264368.1 209696437 6988618 3306387..3306716 1 NC_011312.1 hypothetical protein 3306716 6988618 VSAL_I3051 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264368.1 3306387 D 316275 CDS YP_002264369.1 209696438 6988055 complement(3308727..3309074) 1 NC_011312.1 transposase 3309074 6988055 VSAL_I3054 Aliivibrio salmonicida LFI1238 transposase YP_002264369.1 3308727 R 316275 CDS YP_002264370.1 209696439 6988056 complement(3309071..3309385) 1 NC_011312.1 transposase 3309385 6988056 VSAL_I3055 Aliivibrio salmonicida LFI1238 transposase YP_002264370.1 3309071 R 316275 CDS YP_002264371.1 209696440 6988057 3310696..3311889 1 NC_011312.1 transposase 3311889 6988057 VSAL_I3056 Aliivibrio salmonicida LFI1238 transposase YP_002264371.1 3310696 D 316275 CDS YP_002264372.1 209696441 6988058 complement(3312114..3313472) 1 NC_011312.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3313472 glmU 6988058 glmU Aliivibrio salmonicida LFI1238 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_002264372.1 3312114 R 316275 CDS YP_002264373.1 209696442 6988592 complement(3313708..3314130) 1 NC_011312.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 3314130 atpC 6988592 atpC Aliivibrio salmonicida LFI1238 F0F1 ATP synthase subunit epsilon YP_002264373.1 3313708 R 316275 CDS YP_002264374.1 209696443 6988279 complement(3314149..3315552) 1 NC_011312.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3315552 atpD 6988279 atpD Aliivibrio salmonicida LFI1238 F0F1 ATP synthase subunit beta YP_002264374.1 3314149 R 316275 CDS YP_002264375.1 209696444 6988280 complement(3315586..3316452) 1 NC_011312.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 3316452 atpG 6988280 atpG Aliivibrio salmonicida LFI1238 F0F1 ATP synthase subunit gamma YP_002264375.1 3315586 R 316275 CDS YP_002264376.1 209696445 6988283 complement(3316498..3318039) 1 NC_011312.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3318039 atpA 6988283 atpA Aliivibrio salmonicida LFI1238 F0F1 ATP synthase subunit alpha YP_002264376.1 3316498 R 316275 CDS YP_002264377.1 209696446 6988277 complement(3318053..3318586) 1 NC_011312.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 3318586 atpH 6988277 atpH Aliivibrio salmonicida LFI1238 F0F1 ATP synthase subunit delta YP_002264377.1 3318053 R 316275 CDS YP_002264378.1 209696447 6988284 complement(3318604..3319074) 1 NC_011312.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 3319074 atpF 6988284 atpF Aliivibrio salmonicida LFI1238 F0F1 ATP synthase subunit B YP_002264378.1 3318604 R 316275 CDS YP_002264379.1 209696448 6988282 complement(3319128..3319385) 1 NC_011312.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 3319385 atpE 6988282 atpE Aliivibrio salmonicida LFI1238 F0F1 ATP synthase subunit C YP_002264379.1 3319128 R 316275 CDS YP_002264380.1 209696449 6988281 complement(3319447..3320259) 1 NC_011312.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 3320259 atpB 6988281 atpB Aliivibrio salmonicida LFI1238 F0F1 ATP synthase subunit A YP_002264380.1 3319447 R 316275 CDS YP_002264381.1 209696450 6988278 complement(3320268..3320657) 1 NC_011312.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 3320657 atpI 6988278 atpI Aliivibrio salmonicida LFI1238 F0F1 ATP synthase subunit I YP_002264381.1 3320268 R 316275 CDS YP_002264382.1 209696451 6988285 complement(3320846..3321730) 1 NC_011312.1 Similar to Bacillus subtilis Stage 0 sporulation protein J UniProt:P26497 (282 aa) blastp scores: E()=3e-41; chromosome partitioning protein ParB 3321730 6988285 VSAL_I3067 Aliivibrio salmonicida LFI1238 chromosome partitioning protein ParB YP_002264382.1 3320846 R 316275 CDS YP_002264383.1 209696452 6988059 complement(3321723..3322520) 1 NC_011312.1 chromosome partitioning protein, sporulation initiation inhibitor protein Soj 3322520 6988059 VSAL_I3068 Aliivibrio salmonicida LFI1238 chromosome partitioning protein, sporulation initiation inhibitor protein Soj YP_002264383.1 3321723 R 316275 CDS YP_002264384.1 209696453 6988060 complement(3322536..3323165) 1 NC_011312.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 3323165 gidB 6988060 gidB Aliivibrio salmonicida LFI1238 16S rRNA methyltransferase GidB YP_002264384.1 3322536 R 316275 CDS YP_002264385.1 209696454 6988589 complement(3323167..3325056) 1 NC_011312.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 3325056 gidA 6988589 gidA Aliivibrio salmonicida LFI1238 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_002264385.1 3323167 R 316275 CDS YP_002264386.1 209808848 6962620 1084..3069 1 NC_011313.1 Similar to Vibrio harveyi RctB UniProt:Q6W6R5 (662 aa) fasta scores: E()=6e-178, 69.970% id in 656 aa; oriCII binding protein RctB 3069 rctB 6962620 rctB Aliivibrio salmonicida LFI1238 oriCII binding protein RctB YP_002264386.1 1084 D 316275 CDS YP_002264387.1 209808849 6962568 3426..3773 1 NC_011313.1 putative endoribonuclease L-PSP 3773 6962568 VSAL_II0002 Aliivibrio salmonicida LFI1238 putative endoribonuclease L-PSP YP_002264387.1 3426 D 316275 CDS YP_002264388.1 209808850 6961500 7378..7692 1 NC_011313.1 transposase 7692 6961500 VSAL_II0006 Aliivibrio salmonicida LFI1238 transposase YP_002264388.1 7378 D 316275 CDS YP_002264389.1 209808851 6961502 7796..8677 1 NC_011313.1 transposase 8677 6961502 VSAL_II0008 Aliivibrio salmonicida LFI1238 transposase YP_002264389.1 7796 D 316275 CDS YP_002264390.1 209808852 6961504 complement(10763..12406) 1 NC_011313.1 hypothetical protein 12406 6961504 VSAL_II0010 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264390.1 10763 R 316275 CDS YP_002264391.1 209808853 6961505 complement(12519..14438) 1 NC_011313.1 Similar to Escherichia coli ATP-dependent DNA helicase RecQ UniProt:P15043 (608 aa) fasta scores: E()=2.7e-51, 45.201% id in 323 aa; putative ATP-dependent DNA helicase 14438 recQ 6961505 recQ Aliivibrio salmonicida LFI1238 putative ATP-dependent DNA helicase YP_002264391.1 12519 R 316275 CDS YP_002264392.1 209808854 6962569 complement(14438..14851) 1 NC_011313.1 peptidyl-tRNA hydrolase domain-containing protein 14851 6962569 VSAL_II0012 Aliivibrio salmonicida LFI1238 peptidyl-tRNA hydrolase domain-containing protein YP_002264392.1 14438 R 316275 CDS YP_002264393.1 209808855 6961506 14938..15294 1 NC_011313.1 hypothetical protein 15294 6961506 VSAL_II0013 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264393.1 14938 D 316275 CDS YP_002264394.1 209808856 6961507 15463..16461 1 NC_011313.1 putative SAM-dependent methyltransferase 16461 6961507 VSAL_II0014 Aliivibrio salmonicida LFI1238 putative SAM-dependent methyltransferase YP_002264394.1 15463 D 316275 CDS YP_002264395.1 209808857 6961508 16639..17757 1 NC_011313.1 Similar to Enterobacter aerogenes AcrA protein precursor UniProt:Q9AEG2 (399 aa) fasta scores: E()=2.3e-33, 34.973% id in 366 aa; secretion protein, HlyD family 17757 6961508 VSAL_II0015 Aliivibrio salmonicida LFI1238 secretion protein, HlyD family YP_002264395.1 16639 D 316275 CDS YP_002264396.1 209808858 6961510 complement(18608..19798) 1 NC_011313.1 transposase 19798 6961510 VSAL_II0017 Aliivibrio salmonicida LFI1238 transposase YP_002264396.1 18608 R 316275 CDS YP_002264397.1 209808859 6961511 complement(19931..20536) 1 NC_011313.1 Similar to Pseudomonas aeruginosa Outer membrane porin F precursor OprF UniProt:P13794 (350 aa) fasta scores: E()=3.2e-14, 37.179% id in 156 aa; outer membrane protein OmpA family 20536 6961511 VSAL_II0018 Aliivibrio salmonicida LFI1238 outer membrane protein OmpA family YP_002264397.1 19931 R 316275 CDS YP_002264398.1 209808860 6961512 complement(20539..21861) 1 NC_011313.1 outer membrane efflux protein 21861 6961512 VSAL_II0019 Aliivibrio salmonicida LFI1238 outer membrane efflux protein YP_002264398.1 20539 R 316275 CDS YP_002264399.1 209808861 6961513 22375..31047 1 NC_011313.1 Similar to Staphylococcus hyicus Biofilm-associated protein Bap UniProt:Q4ZHU0 (3278 aa) fasta scores: E()=2.4e-25, 24.872% id in 2738 aa. Expression may be regulated by Fur; hemolysin-type calcium-binding protein 31047 6961513 VSAL_II0020 Aliivibrio salmonicida LFI1238 hemolysin-type calcium-binding protein YP_002264399.1 22375 D 316275 CDS YP_002264400.1 209808862 6961514 31164..31799 1 NC_011313.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 31799 pdxH 6961514 pdxH Aliivibrio salmonicida LFI1238 pyridoxamine 5'-phosphate oxidase YP_002264400.1 31164 D 316275 CDS YP_002264401.1 209808863 6961515 complement(32123..33610) 1 NC_011313.1 transposase 33610 6961515 VSAL_II0023 Aliivibrio salmonicida LFI1238 transposase YP_002264401.1 32123 R 316275 CDS YP_002264402.1 209808864 6961516 complement(33682..34029) 1 NC_011313.1 transposase 34029 6961516 VSAL_II0024 Aliivibrio salmonicida LFI1238 transposase YP_002264402.1 33682 R 316275 CDS YP_002264403.1 209808865 6962413 complement(34583..35080) 1 NC_011313.1 hypothetical protein 35080 6962413 VSAL_II0026 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264403.1 34583 R 316275 CDS YP_002264404.1 209808866 6961519 complement(35194..36138) 1 NC_011313.1 protein alx 36138 6961519 VSAL_II0027 Aliivibrio salmonicida LFI1238 protein alx YP_002264404.1 35194 R 316275 CDS YP_002264405.1 209808867 6961520 36529..37692 1 NC_011313.1 hypothetical protein 37692 6961520 VSAL_II0028 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264405.1 36529 D 316275 CDS YP_002264406.1 209808868 6961523 complement(41155..42642) 1 NC_011313.1 transposase 42642 6961523 VSAL_II0031 Aliivibrio salmonicida LFI1238 transposase YP_002264406.1 41155 R 316275 CDS YP_002264407.1 209808869 6961524 complement(42714..43061) 1 NC_011313.1 transposase 43061 6961524 VSAL_II0032 Aliivibrio salmonicida LFI1238 transposase YP_002264407.1 42714 R 316275 CDS YP_002264408.1 209808870 6961525 complement(43058..43372) 1 NC_011313.1 transposase 43372 6961525 VSAL_II0033 Aliivibrio salmonicida LFI1238 transposase YP_002264408.1 43058 R 316275 CDS YP_002264409.1 209808871 6961526 complement(44608..45717) 1 NC_011313.1 secretion protein, HlyD family 45717 6961526 VSAL_II0034 Aliivibrio salmonicida LFI1238 secretion protein, HlyD family YP_002264409.1 44608 R 316275 CDS YP_002264410.1 209808872 6961527 45894..46502 1 NC_011313.1 putative transcriptional regulator, TetR family 46502 6961527 VSAL_II0035 Aliivibrio salmonicida LFI1238 putative transcriptional regulator, TetR family YP_002264410.1 45894 D 316275 CDS YP_002264411.1 209808873 6961528 complement(46584..47504) 1 NC_011313.1 membrane protein 47504 6961528 VSAL_II0036 Aliivibrio salmonicida LFI1238 membrane protein YP_002264411.1 46584 R 316275 CDS YP_002264412.1 209808874 6961529 complement(47611..50316) 1 NC_011313.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 50316 malT 6961529 malT Aliivibrio salmonicida LFI1238 transcriptional regulator MalT YP_002264412.1 47611 R 316275 CDS YP_002264413.1 209808875 6962527 50713..53166 1 NC_011313.1 maltodextrin phosphorylase 53166 malP 6962527 malP Aliivibrio salmonicida LFI1238 maltodextrin phosphorylase YP_002264413.1 50713 D 316275 CDS YP_002264414.1 209808876 6962525 53224..55404 1 NC_011313.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 55404 malQ 6962525 malQ Aliivibrio salmonicida LFI1238 4-alpha-glucanotransferase YP_002264414.1 53224 D 316275 CDS YP_002264415.1 209808877 6962470 complement(57716..58597) 1 NC_011313.1 transposase 58597 6962470 VSAL_II0041 Aliivibrio salmonicida LFI1238 transposase YP_002264415.1 57716 R 316275 CDS YP_002264416.1 209808878 6961530 58697..59011 1 NC_011313.1 transposase 59011 6961530 VSAL_II0042 Aliivibrio salmonicida LFI1238 transposase YP_002264416.1 58697 D 316275 CDS YP_002264417.1 209808879 6961531 59008..59355 1 NC_011313.1 transposase 59355 6961531 VSAL_II0043 Aliivibrio salmonicida LFI1238 transposase YP_002264417.1 59008 D 316275 CDS YP_002264418.1 209808880 6961534 complement(60913..62400) 1 NC_011313.1 transposase 62400 6961534 VSAL_II0046 Aliivibrio salmonicida LFI1238 transposase YP_002264418.1 60913 R 316275 CDS YP_002264419.1 209808881 6961535 complement(62472..62819) 1 NC_011313.1 transposase 62819 6961535 VSAL_II0047 Aliivibrio salmonicida LFI1238 transposase YP_002264419.1 62472 R 316275 CDS YP_002264420.1 209808882 6961536 complement(62816..63130) 1 NC_011313.1 transposase 63130 6961536 VSAL_II0048 Aliivibrio salmonicida LFI1238 transposase YP_002264420.1 62816 R 316275 CDS YP_002264421.1 209808883 6961538 complement(63564..66209) 1 NC_011313.1 N,N'-diacetylchitobiase (chitobiase) 66209 chb 6961538 chb Aliivibrio salmonicida LFI1238 N,N'-diacetylchitobiase (chitobiase) YP_002264421.1 63564 R 316275 CDS YP_002264422.1 209808884 6962442 66735..67235 1 NC_011313.1 Similar to Escherichia coli Inner membrane protein YcdZ UniProt:P75916 (163 aa) fasta scores: E()=9.8e-34,68.243% id in 148 aa; inner membrane protein 67235 6962442 VSAL_II0051 Aliivibrio salmonicida LFI1238 inner membrane protein YP_002264422.1 66735 D 316275 CDS YP_002264423.1 209808885 6962416 complement(67915..68814) 1 NC_011313.1 response regulator protein 68814 6962416 VSAL_II0052 Aliivibrio salmonicida LFI1238 response regulator protein YP_002264423.1 67915 R 316275 CDS YP_002264424.1 209808886 6961540 complement(68853..71309) 1 NC_011313.1 membrane associated response regulator,histidine kinase 71309 6961540 VSAL_II0053 Aliivibrio salmonicida LFI1238 membrane associated response regulator,histidine kinase YP_002264424.1 68853 R 316275 CDS YP_002264425.1 209808887 6961541 complement(71442..78503) 1 NC_011313.1 hypothetical protein 78503 6961541 VSAL_II0054 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264425.1 71442 R 316275 CDS YP_002264426.1 209808888 6961542 78698..79012 1 NC_011313.1 hypothetical protein 79012 6961542 VSAL_II0055 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264426.1 78698 D 316275 CDS YP_002264427.1 209808889 6961543 79067..80395 1 NC_011313.1 putative type I secretion protein, HlyD family 80395 6961543 VSAL_II0056 Aliivibrio salmonicida LFI1238 putative type I secretion protein, HlyD family YP_002264427.1 79067 D 316275 CDS YP_002264428.1 209808890 6961544 80402..82627 1 NC_011313.1 putative membrane associated response regulator 82627 6961544 VSAL_II0057 Aliivibrio salmonicida LFI1238 putative membrane associated response regulator YP_002264428.1 80402 D 316275 CDS YP_002264429.1 209808891 6961545 82627..83997 1 NC_011313.1 Similar to Pseudomonas aeruginosa Alkaline protease secretion protein AprF UniProt:Q03027 (481 aa) fasta scores: E()=1.8e-12, 20.588% id in 408 aa; putative type I toxin secretion system, outer membrane efflux protein 83997 6961545 VSAL_II0058 Aliivibrio salmonicida LFI1238 putative type I toxin secretion system, outer membrane efflux protein YP_002264429.1 82627 D 316275 CDS YP_002264430.1 209808892 6961546 83994..85577 1 NC_011313.1 Similar to Pseudomonas fluorescens Zinc-protease transporter AprD UniProt:O67993 (579 aa) fasta scores: E()=5.1e-09, 22.770% id in 527 aa; putative type I toxin secretion system, membrane transport protein 85577 6961546 VSAL_II0059 Aliivibrio salmonicida LFI1238 putative type I toxin secretion system, membrane transport protein YP_002264430.1 83994 D 316275 CDS YP_002264431.1 209808893 6961547 85578..87731 1 NC_011313.1 Similar to Serratia marcescens Secretion protein LipB UniProt:Q54456 (588 aa) fasta scores: E()=5.4e-21,24.291% id in 564 aa; putative type I toxin secretion system,ATP-binding protein 87731 6961547 VSAL_II0060 Aliivibrio salmonicida LFI1238 putative type I toxin secretion system,ATP-binding protein YP_002264431.1 85578 D 316275 CDS YP_002264432.1 209808894 6961548 complement(87782..88576) 1 NC_011313.1 Similar to Bacillus sp Lichenase precursor Bga1 UniProt:Q45648 (276 aa) fasta scores: E()=9.2e-22, 36.538% id in 260 aa; exported glycosyl hydrolase, family 16 88576 6961548 VSAL_II0061 Aliivibrio salmonicida LFI1238 exported glycosyl hydrolase, family 16 YP_002264432.1 87782 R 316275 CDS YP_002264433.1 209808895 6961549 complement(88569..90053) 1 NC_011313.1 membrane protein 90053 6961549 VSAL_II0062 Aliivibrio salmonicida LFI1238 membrane protein YP_002264433.1 88569 R 316275 CDS YP_002264434.1 209808896 6961550 90232..91932 1 NC_011313.1 Similar to Yersinia ruckeri Putative ATP-binding metalloprotease secretion protein UniProt:Q8VLR8 (580 aa) fasta scores: E()=1.2e-60, 38.283% id in 559 aa; putative type I secretion system, ATP-binding protein 91932 6961550 VSAL_II0063 Aliivibrio salmonicida LFI1238 putative type I secretion system, ATP-binding protein YP_002264434.1 90232 D 316275 CDS YP_002264435.1 209808897 6961551 91947..93236 1 NC_011313.1 Similar to Rhizobium meliloti Membrane fusion protein Expd2 UniProt:O05198 (473 aa) fasta scores: E()=1.1e-33, 28.538% id in 424 aa; putative type I secretion protein, HlyD family 93236 6961551 VSAL_II0064 Aliivibrio salmonicida LFI1238 putative type I secretion protein, HlyD family YP_002264435.1 91947 D 316275 CDS YP_002264436.1 209808898 6961552 93246..93488 1 NC_011313.1 membrane protein 93488 6961552 VSAL_II0065 Aliivibrio salmonicida LFI1238 membrane protein YP_002264436.1 93246 D 316275 CDS YP_002264437.1 209808899 6961553 93524..94282 1 NC_011313.1 membrane protein 94282 6961553 VSAL_II0066 Aliivibrio salmonicida LFI1238 membrane protein YP_002264437.1 93524 D 316275 CDS YP_002264438.1 209808900 6961554 complement(94418..94579) 1 NC_011313.1 hypothetical protein 94579 6961554 VSAL_II0067 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264438.1 94418 R 316275 CDS YP_002264439.1 209808901 6961555 complement(94576..94767) 1 NC_011313.1 hypothetical protein 94767 6961555 VSAL_II0068 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264439.1 94576 R 316275 CDS YP_002264440.1 209808902 6961556 complement(94820..96307) 1 NC_011313.1 transposase 96307 6961556 VSAL_II0069 Aliivibrio salmonicida LFI1238 transposase YP_002264440.1 94820 R 316275 CDS YP_002264441.1 209808903 6961557 complement(96379..96726) 1 NC_011313.1 transposase 96726 6961557 VSAL_II0070 Aliivibrio salmonicida LFI1238 transposase YP_002264441.1 96379 R 316275 CDS YP_002264442.1 209808904 6961560 complement(97685..99019) 1 NC_011313.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 99019 astB 6961560 astB Aliivibrio salmonicida LFI1238 succinylarginine dihydrolase YP_002264442.1 97685 R 316275 CDS YP_002264443.1 209808905 6962433 99366..100550 1 NC_011313.1 Expression may be regulated by Fur; membrane protein 100550 6962433 VSAL_II0074 Aliivibrio salmonicida LFI1238 membrane protein YP_002264443.1 99366 D 316275 CDS YP_002264444.1 209808906 6961561 complement(100746..101366) 1 NC_011313.1 hypothetical protein 101366 6961561 VSAL_II0075 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264444.1 100746 R 316275 CDS YP_002264445.1 209808907 6961562 101509..102360 1 NC_011313.1 integral membrane protein 102360 6961562 VSAL_II0076 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002264445.1 101509 D 316275 CDS YP_002264446.1 209808908 6961563 complement(102347..103216) 1 NC_011313.1 AraC family transcriptional regulator 103216 6961563 VSAL_II0077 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002264446.1 102347 R 316275 CDS YP_002264447.1 209808909 6961564 103330..104484 1 NC_011313.1 putative aminotransferase 104484 6961564 VSAL_II0078 Aliivibrio salmonicida LFI1238 putative aminotransferase YP_002264447.1 103330 D 316275 CDS YP_002264448.1 209808910 6961565 104527..105651 1 NC_011313.1 Expression may be stress-induced; zinc carboxypeptidase 105651 6961565 VSAL_II0079 Aliivibrio salmonicida LFI1238 zinc carboxypeptidase YP_002264448.1 104527 D 316275 CDS YP_002264449.1 209808911 6961566 complement(105883..107370) 1 NC_011313.1 transposase 107370 6961566 VSAL_II0080 Aliivibrio salmonicida LFI1238 transposase YP_002264449.1 105883 R 316275 CDS YP_002264450.1 209808912 6961567 complement(107442..107789) 1 NC_011313.1 transposase 107789 6961567 VSAL_II0081 Aliivibrio salmonicida LFI1238 transposase YP_002264450.1 107442 R 316275 CDS YP_002264451.1 209808913 6961569 complement(108268..109188) 1 NC_011313.1 putative permease 109188 6961569 VSAL_II0083 Aliivibrio salmonicida LFI1238 putative permease YP_002264451.1 108268 R 316275 CDS YP_002264452.1 209808914 6961570 109326..110519 1 NC_011313.1 transposase 110519 6961570 VSAL_II0084 Aliivibrio salmonicida LFI1238 transposase YP_002264452.1 109326 D 316275 CDS YP_002264453.1 209808915 6961571 110722..110889 1 NC_011313.1 hypothetical protein 110889 6961571 VSAL_II0085 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264453.1 110722 D 316275 CDS YP_002264454.1 209808916 6961572 110942..111295 1 NC_011313.1 hypothetical protein 111295 6961572 VSAL_II0086 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264454.1 110942 D 316275 CDS YP_002264455.1 209808917 6961573 111425..111577 1 NC_011313.1 hypothetical protein 111577 6961573 VSAL_II0087 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264455.1 111425 D 316275 CDS YP_002264456.1 209808918 6961574 111582..111908 1 NC_011313.1 hypothetical protein 111908 6961574 VSAL_II0088 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264456.1 111582 D 316275 CDS YP_002264457.1 209808919 6961575 complement(112006..112983) 1 NC_011313.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 112983 fruR 6961575 fruR Aliivibrio salmonicida LFI1238 DNA-binding transcriptional regulator FruR YP_002264457.1 112006 R 316275 CDS YP_002264458.1 209808920 6962466 113254..114390 1 NC_011313.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 114390 fruB 6962466 fruB Aliivibrio salmonicida LFI1238 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein YP_002264458.1 113254 D 316275 CDS YP_002264459.1 209808921 6962464 114394..115371 1 NC_011313.1 1-phosphofructokinase 115371 fruK 6962464 fruK Aliivibrio salmonicida LFI1238 1-phosphofructokinase YP_002264459.1 114394 D 316275 CDS YP_002264460.1 209808922 6962465 115402..117141 1 NC_011313.1 PTS system fructose-specific transporter subunit IIBC 117141 fruA 6962465 fruA Aliivibrio salmonicida LFI1238 PTS system fructose-specific transporter subunit IIBC YP_002264460.1 115402 D 316275 CDS YP_002264461.1 209808923 6962463 complement(117309..117767) 1 NC_011313.1 hypothetical protein 117767 6962463 VSAL_II0093 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264461.1 117309 R 316275 CDS YP_002264462.1 209808924 6961577 118500..118814 1 NC_011313.1 transposase 118814 6961577 VSAL_II0095 Aliivibrio salmonicida LFI1238 transposase YP_002264462.1 118500 D 316275 CDS YP_002264463.1 209808925 6961578 118811..119158 1 NC_011313.1 transposase 119158 6961578 VSAL_II0096 Aliivibrio salmonicida LFI1238 transposase YP_002264463.1 118811 D 316275 CDS YP_002264464.1 209808926 6961579 119315..120196 1 NC_011313.1 transposase 120196 6961579 VSAL_II0097 Aliivibrio salmonicida LFI1238 transposase YP_002264464.1 119315 D 316275 CDS YP_002264465.1 209808927 6961580 120237..121724 1 NC_011313.1 transposase 121724 6961580 VSAL_II0098 Aliivibrio salmonicida LFI1238 transposase YP_002264465.1 120237 D 316275 CDS YP_002264466.1 209808928 6961581 complement(122303..123475) 1 NC_011313.1 Expression may be stress-induced; putative lipoprotein 123475 6961581 VSAL_II0099 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002264466.1 122303 R 316275 CDS YP_002264467.1 209808929 6961582 complement(123595..123861) 1 NC_011313.1 hypothetical protein 123861 6961582 VSAL_II0100 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264467.1 123595 R 316275 CDS YP_002264468.1 209808930 6961583 complement(124530..125705) 1 NC_011313.1 Similar to Pseudomonas sp Carboxypeptidase G2 precursor Cpg2 UniProt:P06621 (415 aa) fasta scores: E()=1.6e-11, 25.849% id in 383 aa; peptidase 125705 6961583 VSAL_II0101 Aliivibrio salmonicida LFI1238 peptidase YP_002264468.1 124530 R 316275 CDS YP_002264469.1 209808931 6961584 125864..127009 1 NC_011313.1 peptide methionine sulfoxide reductase 127009 6961584 VSAL_II0102 Aliivibrio salmonicida LFI1238 peptide methionine sulfoxide reductase YP_002264469.1 125864 D 316275 CDS YP_002264470.1 209808932 6961585 complement(127079..127834) 1 NC_011313.1 DeoR-family transcriptional regulator 127834 6961585 VSAL_II0103 Aliivibrio salmonicida LFI1238 DeoR-family transcriptional regulator YP_002264470.1 127079 R 316275 CDS YP_002264471.1 209808933 6961586 128086..129027 1 NC_011313.1 Expression may be regulated by Fur; putative 6-phosphogluconate dehydrogenase 129027 6961586 VSAL_II0104 Aliivibrio salmonicida LFI1238 putative 6-phosphogluconate dehydrogenase YP_002264471.1 128086 D 316275 CDS YP_002264472.1 209808934 6961588 complement(129529..130719) 1 NC_011313.1 transposase 130719 6961588 VSAL_II0106 Aliivibrio salmonicida LFI1238 transposase YP_002264472.1 129529 R 316275 CDS YP_002264473.1 209808935 6961589 complement(130965..132158) 1 NC_011313.1 transposase 132158 6961589 VSAL_II0107 Aliivibrio salmonicida LFI1238 transposase YP_002264473.1 130965 R 316275 CDS YP_002264474.1 209808936 6961592 135157..137238 1 NC_011313.1 Similar to Salmonella typhimurium Ferrioxamine B receptor precursor FoxA UniProt:Q56145 (702 aa) fasta scores: E()=8.7e-31, 26.752% id in 628 aa. Expression may be regulated by Fur; TonB dependent receptor 137238 6961592 VSAL_II0110 Aliivibrio salmonicida LFI1238 TonB dependent receptor YP_002264474.1 135157 D 316275 CDS YP_002264475.1 209808937 6961593 137339..138106 1 NC_011313.1 hypothetical protein 138106 6961593 VSAL_II0111 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264475.1 137339 D 316275 CDS YP_002264476.1 209808938 6961594 138108..139463 1 NC_011313.1 biopolymer transport protein TolR 139463 tolR2 6961594 tolR2 Aliivibrio salmonicida LFI1238 biopolymer transport protein TolR YP_002264476.1 138108 D 316275 CDS YP_002264477.1 209808939 6962606 139463..139972 1 NC_011313.1 TonB system transport protein ExbB2 139972 exbB2 6962606 exbB2 Aliivibrio salmonicida LFI1238 TonB system transport protein ExbB2 YP_002264477.1 139463 D 316275 CDS YP_002264478.1 209808940 6962457 139969..140373 1 NC_011313.1 TonB system transport protein ExbD2 140373 exbD2 6962457 exbD2 Aliivibrio salmonicida LFI1238 TonB system transport protein ExbD2 YP_002264478.1 139969 D 316275 CDS YP_002264479.1 209808941 6962459 140373..140993 1 NC_011313.1 TonB protein 140993 tonB2 6962459 tonB2 Aliivibrio salmonicida LFI1238 TonB protein YP_002264479.1 140373 D 316275 CDS YP_002264480.1 209808942 6962608 140990..142192 1 NC_011313.1 hypothetical protein 142192 6962608 VSAL_II0116 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264480.1 140990 D 316275 CDS YP_002264481.1 209808943 6961595 complement(142368..143561) 1 NC_011313.1 transposase 143561 6961595 VSAL_II0117 Aliivibrio salmonicida LFI1238 transposase YP_002264481.1 142368 R 316275 CDS YP_002264482.1 209808944 6961596 143791..144435 1 NC_011313.1 Similar to Pasteurella piscicida Putative iron-regulated protein (fragment) UniProt:Q6ZXD3 (106 aa) fasta scores: E()=1.7e-17, 54.054% id in 111 aa. Expression may be regulated by Fur; membrane protein 144435 6961596 VSAL_II0118 Aliivibrio salmonicida LFI1238 membrane protein YP_002264482.1 143791 D 316275 CDS YP_002264483.1 209808945 6961597 144469..144993 1 NC_011313.1 hypothetical protein 144993 6961597 VSAL_II0119 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264483.1 144469 D 316275 CDS YP_002264484.1 209808946 6961598 144999..145874 1 NC_011313.1 Possible alternative translational start site after codon 10; hypothetical protein 145874 6961598 VSAL_II0120 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264484.1 144999 D 316275 CDS YP_002264485.1 209808947 6961599 145932..146249 1 NC_011313.1 hypothetical protein 146249 6961599 VSAL_II0121 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264485.1 145932 D 316275 CDS YP_002264486.1 209808948 6961600 146246..146809 1 NC_011313.1 hypothetical protein 146809 6961600 VSAL_II0122 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264486.1 146246 D 316275 CDS YP_002264487.1 209808949 6961601 146832..147755 1 NC_011313.1 Similar to Streptococcus sanguis Manganese ABC transporter substrate-binding lipoprotein precursor SsaB UniProt:P31304 (309 aa) fasta scores: E()=8.1e-14, 26.774% id in 310 aa; periplasmic solute binding protein 147755 6961601 VSAL_II0123 Aliivibrio salmonicida LFI1238 periplasmic solute binding protein YP_002264487.1 146832 D 316275 CDS YP_002264488.1 209808950 6961602 147755..148519 1 NC_011313.1 Similar to Bacillus subtilis Manganese transport system ATP-binding protein MntB UniProt:O34338 (250 aa) fasta scores: E()=5.7e-17, 33.047% id in 233 aa; ABC transporter ATP-binding protein 148519 6961602 VSAL_II0124 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002264488.1 147755 D 316275 CDS YP_002264489.1 209808951 6961603 148519..149394 1 NC_011313.1 ABC-3 transporter protein, membrane component 149394 6961603 VSAL_II0125 Aliivibrio salmonicida LFI1238 ABC-3 transporter protein, membrane component YP_002264489.1 148519 D 316275 CDS YP_002264490.1 209808952 6961604 149437..150321 1 NC_011313.1 membrane protein 150321 6961604 VSAL_II0126 Aliivibrio salmonicida LFI1238 membrane protein YP_002264490.1 149437 D 316275 CDS YP_002264491.1 209808953 6961605 150664..151485 1 NC_011313.1 Weakly similar Streptococcus pyogenes Putative recombinase-phage-associated UniProt:Q8K7P3 (191 aa) fasta scores: E()=3.9e-05, 32.174% id in 115 aa; hypothetical protein 151485 6961605 VSAL_II0127 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264491.1 150664 D 316275 CDS YP_002264492.1 209808954 6961606 151885..152211 1 NC_011313.1 hypothetical protein 152211 6961606 VSAL_II0128 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264492.1 151885 D 316275 CDS YP_002264493.1 209808955 6961608 complement(153112..154305) 1 NC_011313.1 transposase 154305 6961608 VSAL_II0130 Aliivibrio salmonicida LFI1238 transposase YP_002264493.1 153112 R 316275 CDS YP_002264494.1 209808956 6961609 complement(155315..155662) 1 NC_011313.1 transposase 155662 6961609 VSAL_II0131 Aliivibrio salmonicida LFI1238 transposase YP_002264494.1 155315 R 316275 CDS YP_002264495.1 209808957 6961610 complement(155659..155973) 1 NC_011313.1 transposase 155973 6961610 VSAL_II0132 Aliivibrio salmonicida LFI1238 transposase YP_002264495.1 155659 R 316275 CDS YP_002264496.1 209808958 6961612 157455..158930 1 NC_011313.1 GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells; N-acetylglucosamine-binding protein A 158930 6961612 VSAL_II0134 Aliivibrio salmonicida LFI1238 N-acetylglucosamine-binding protein A YP_002264496.1 157455 D 316275 CDS YP_002264497.1 209808959 6961613 158992..159531 1 NC_011313.1 Similar to Escherichia coli Cytochrome b561 homolog 2 UniProt:P75925 (188 aa) fasta scores: E()=6.9e-05,26.966% id in 178 aa; putative cytochrome b561 159531 6961613 VSAL_II0135 Aliivibrio salmonicida LFI1238 putative cytochrome b561 YP_002264497.1 158992 D 316275 CDS YP_002264498.1 209808960 6961614 160057..160548 1 NC_011313.1 hypothetical protein 160548 6961614 VSAL_II0136 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264498.1 160057 D 316275 CDS YP_002264499.1 209808961 6961615 complement(160552..160908) 1 NC_011313.1 hypothetical protein 160908 6961615 VSAL_II0137 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264499.1 160552 R 316275 CDS YP_002264500.1 209808962 6961616 161245..161445 1 NC_011313.1 hypothetical protein 161445 6961616 VSAL_II0138 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264500.1 161245 D 316275 CDS YP_002264501.1 209808963 6961617 complement(161531..162022) 1 NC_011313.1 Similar to Vibrio fischeri PilA UniProt:Q8KTJ5 (128 aa) fasta scores: E()=1e-05, 35.583% id in 163 aa. CDS contains additional internal amino acids, residues 63 to 100, in comparison to Vibrio fischeri orthologue; PilA-like type-IV pilus protein 162022 6961617 VSAL_II0139 Aliivibrio salmonicida LFI1238 PilA-like type-IV pilus protein YP_002264501.1 161531 R 316275 CDS YP_002264502.1 209808964 6961618 162314..162520 1 NC_011313.1 hypothetical protein 162520 6961618 VSAL_II0140 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264502.1 162314 D 316275 CDS YP_002264503.1 209808965 6961619 162613..163335 1 NC_011313.1 hypothetical protein 163335 6961619 VSAL_II0141 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264503.1 162613 D 316275 CDS YP_002264504.1 209808966 6961620 163541..165028 1 NC_011313.1 Similar to Escherichia coli Putative ATP-dependent RNA helicase RhlE UniProt:P25888 (454 aa) fasta scores: E()=2.9e-84, 58.590% id in 454 aa; putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) 165028 rhlE 6961620 rhlE Aliivibrio salmonicida LFI1238 putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) YP_002264504.1 163541 D 316275 CDS YP_002264505.1 209808967 6962570 165330..166778 1 NC_011313.1 Expression may be regulated by Fur; membrane associated GGDEF protein 166778 6962570 VSAL_II0143 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002264505.1 165330 D 316275 CDS YP_002264506.1 209808968 6961621 166914..168359 1 NC_011313.1 membrane associated GGDEF protein 168359 6961621 VSAL_II0144 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002264506.1 166914 D 316275 CDS YP_002264507.1 209808969 6961622 168657..169859 1 NC_011313.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 169859 emrD 6961622 emrD Aliivibrio salmonicida LFI1238 multidrug resistance protein D YP_002264507.1 168657 D 316275 CDS YP_002264508.1 209808970 6961623 complement(169989..171377) 1 NC_011313.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 171377 dbpA 6961623 dbpA Aliivibrio salmonicida LFI1238 ATP-dependent RNA helicase DbpA YP_002264508.1 169989 R 316275 CDS YP_002264509.1 209808971 6962452 171614..173077 1 NC_011313.1 membrane associated GGDEF protein 173077 6962452 VSAL_II0147 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002264509.1 171614 D 316275 CDS YP_002264510.1 209808972 6961624 173152..173880 1 NC_011313.1 Similar to Bordetella bronchiseptica AlcD UniProt:O52832 (267 aa) fasta scores: E()=2.3e-12, 25.630% id in 238 aa. Expression may be regulated by Fur; hypothetical protein 173880 6961624 VSAL_II0148 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264510.1 173152 D 316275 CDS YP_002264511.1 209808973 6961625 complement(173877..175025) 1 NC_011313.1 Similar to Bacillus subtilis Multidrug resistance protein 1 Bmr UniProt:P33449 (389 aa) fasta scores: E()=0.00092, 20.588% id in 374 aa. Expression may be regulated by Fur; MFS transporter 175025 6961625 VSAL_II0149 Aliivibrio salmonicida LFI1238 MFS transporter YP_002264511.1 173877 R 316275 CDS YP_002264512.1 209808974 6961626 175230..175997 1 NC_011313.1 Expression may be regulated by Fur; ferrichrome transport ATP-binding protein FhuC 175997 6961626 VSAL_II0150 Aliivibrio salmonicida LFI1238 ferrichrome transport ATP-binding protein FhuC YP_002264512.1 175230 D 316275 CDS YP_002264513.1 209808975 6961627 176035..176925 1 NC_011313.1 ferrichrome-binding periplasmic protein 176925 6961627 VSAL_II0151 Aliivibrio salmonicida LFI1238 ferrichrome-binding periplasmic protein YP_002264513.1 176035 D 316275 CDS YP_002264514.1 209808976 6961628 176925..178913 1 NC_011313.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 178913 6961628 VSAL_II0152 Aliivibrio salmonicida LFI1238 iron-hydroxamate transporter permease subunit YP_002264514.1 176925 D 316275 CDS YP_002264515.1 209808977 6961629 complement(179753..180379) 1 NC_011313.1 hypothetical protein 180379 6961629 VSAL_II0153 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264515.1 179753 R 316275 CDS YP_002264516.1 209808978 6961630 complement(180443..181057) 1 NC_011313.1 putative nitroreductase 181057 6961630 VSAL_II0154 Aliivibrio salmonicida LFI1238 putative nitroreductase YP_002264516.1 180443 R 316275 CDS YP_002264517.1 209808979 6961631 complement(181124..182107) 1 NC_011313.1 zinc-binding dehydrogenase 182107 6961631 VSAL_II0155 Aliivibrio salmonicida LFI1238 zinc-binding dehydrogenase YP_002264517.1 181124 R 316275 CDS YP_002264518.1 209808980 6961632 182270..183169 1 NC_011313.1 LysR family transcriptional regulator 183169 6961632 VSAL_II0156 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002264518.1 182270 D 316275 CDS YP_002264519.1 209808981 6961634 184826..185707 1 NC_011313.1 transposase 185707 6961634 VSAL_II0158 Aliivibrio salmonicida LFI1238 transposase YP_002264519.1 184826 D 316275 CDS YP_002264520.1 209808982 6961635 complement(186185..187057) 1 NC_011313.1 protoheme IX farnesyltransferase (cytochrome o ubiquinol oxidase C subunit IV) 187057 cyoE 6961635 cyoE Aliivibrio salmonicida LFI1238 protoheme IX farnesyltransferase (cytochrome o ubiquinol oxidase C subunit IV) YP_002264520.1 186185 R 316275 CDS YP_002264521.1 209808983 6962451 complement(187066..187395) 1 NC_011313.1 cytochrome o ubiquinol oxidase subunit CyoD 187395 cyoD 6962451 cyoD Aliivibrio salmonicida LFI1238 cytochrome o ubiquinol oxidase subunit CyoD YP_002264521.1 187066 R 316275 CDS YP_002264522.1 209808984 6962450 complement(187395..188003) 1 NC_011313.1 Similar to Pseudomonas putida CyoC UniProt:Q6S4M5 (208 aa) fasta scores: E()=1.5e-48, 65.128% id in 195 aa; cytochrome o ubiquinol oxidase subunit III 188003 cyoC 6962450 cyoC Aliivibrio salmonicida LFI1238 cytochrome o ubiquinol oxidase subunit III YP_002264522.1 187395 R 316275 CDS YP_002264523.1 209808985 6962448 complement(190046..190969) 1 NC_011313.1 Expression may be regulated by Fur; cytochrome o ubiquinol oxidase subunit II (ubiquinol oxidase subunit 2 ) 190969 cyoA 6962448 cyoA Aliivibrio salmonicida LFI1238 cytochrome o ubiquinol oxidase subunit II (ubiquinol oxidase subunit 2 ) YP_002264523.1 190046 R 316275 CDS YP_002264524.1 209808986 6962447 191627..192361 1 NC_011313.1 membrane protein 192361 6962447 VSAL_II0164 Aliivibrio salmonicida LFI1238 membrane protein YP_002264524.1 191627 D 316275 CDS YP_002264525.1 209808987 6961636 192358..193143 1 NC_011313.1 membrane protein 193143 6961636 VSAL_II0165 Aliivibrio salmonicida LFI1238 membrane protein YP_002264525.1 192358 D 316275 CDS YP_002264526.1 209808988 6961637 193158..193508 1 NC_011313.1 hypothetical protein 193508 6961637 VSAL_II0166 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264526.1 193158 D 316275 CDS YP_002264527.1 209808989 6961638 193505..193903 1 NC_011313.1 hypothetical protein 193903 6961638 VSAL_II0167 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264527.1 193505 D 316275 CDS YP_002264528.1 209808990 6961639 complement(193964..195088) 1 NC_011313.1 hypothetical protein 195088 6961639 VSAL_II0168 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264528.1 193964 R 316275 CDS YP_002264529.1 209808991 6961640 195408..195875 1 NC_011313.1 hypothetical protein 195875 6961640 VSAL_II0169 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264529.1 195408 D 316275 CDS YP_002264530.1 209808992 6961641 complement(195935..197566) 1 NC_011313.1 Similar to Vibrio cholerae Toxin coregulated pilus biosynthesis protein I TcpI UniProt:P29486 (620 aa) fasta scores: E()=1.3e-31, 37.203% id in 379 aa; methyl-accepting chemotaxis protein 197566 6961641 VSAL_II0170 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002264530.1 195935 R 316275 CDS YP_002264531.1 209808993 6961642 complement(197679..197969) 1 NC_011313.1 hypothetical protein 197969 6961642 VSAL_II0171 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264531.1 197679 R 316275 CDS YP_002264532.1 209808994 6961643 complement(197990..198322) 1 NC_011313.1 hypothetical protein 198322 6961643 VSAL_II0172 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264532.1 197990 R 316275 CDS YP_002264533.1 209808995 6961644 198406..198720 1 NC_011313.1 transposase 198720 6961644 VSAL_II0173 Aliivibrio salmonicida LFI1238 transposase YP_002264533.1 198406 D 316275 CDS YP_002264534.1 209808996 6961645 198717..199064 1 NC_011313.1 transposase 199064 6961645 VSAL_II0174 Aliivibrio salmonicida LFI1238 transposase YP_002264534.1 198717 D 316275 CDS YP_002264535.1 209808997 6961646 199136..200623 1 NC_011313.1 transposase 200623 6961646 VSAL_II0175 Aliivibrio salmonicida LFI1238 transposase YP_002264535.1 199136 D 316275 CDS YP_002264536.1 209808998 6961647 complement(200732..202702) 1 NC_011313.1 hypothetical protein 202702 6961647 VSAL_II0176 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264536.1 200732 R 316275 CDS YP_002264537.1 209808999 6961648 complement(202973..203296) 1 NC_011313.1 hypothetical protein 203296 6961648 VSAL_II0177 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264537.1 202973 R 316275 CDS YP_002264538.1 209809000 6961649 203420..204292 1 NC_011313.1 Similar to Escherichia coli HTH-type transcriptional regulator HdfR UniProt:P0A8R9 (279 aa) fasta scores: E()=2.5e-34, 41.429% id in 280 aa; LysR family transcriptional regulator 204292 6961649 VSAL_II0178 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002264538.1 203420 D 316275 CDS YP_002264539.1 209809001 6961650 complement(204363..205406) 1 NC_011313.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 205406 6961650 VSAL_II0179 Aliivibrio salmonicida LFI1238 ribosome-associated GTPase YP_002264539.1 204363 R 316275 CDS YP_002264540.1 209809002 6961651 205699..207045 1 NC_011313.1 divalent cation transporter magnesium transporter 207045 6961651 VSAL_II0180 Aliivibrio salmonicida LFI1238 divalent cation transporter magnesium transporter YP_002264540.1 205699 D 316275 CDS YP_002264541.1 209809003 6961652 207607..208383 1 NC_011313.1 ABC-type glycine betaine transport system,substrate binding domain 208383 6961652 VSAL_II0181 Aliivibrio salmonicida LFI1238 ABC-type glycine betaine transport system,substrate binding domain YP_002264541.1 207607 D 316275 CDS YP_002264542.1 209809004 6961653 complement(208504..209349) 1 NC_011313.1 universal stress protein 209349 6961653 VSAL_II0182 Aliivibrio salmonicida LFI1238 universal stress protein YP_002264542.1 208504 R 316275 CDS YP_002264543.1 209809005 6961654 complement(209361..210848) 1 NC_011313.1 putative sulfate transporter 210848 6961654 VSAL_II0183 Aliivibrio salmonicida LFI1238 putative sulfate transporter YP_002264543.1 209361 R 316275 CDS YP_002264544.1 209809006 6961655 complement(211360..212235) 1 NC_011313.1 integral membrane protein 212235 6961655 VSAL_II0184 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002264544.1 211360 R 316275 CDS YP_002264545.1 209809007 6961656 complement(212316..212690) 1 NC_011313.1 hypothetical protein 212690 6961656 VSAL_II0185 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264545.1 212316 R 316275 CDS YP_002264546.1 209809008 6961659 complement(214523..215716) 1 NC_011313.1 transposase 215716 6961659 VSAL_II0188 Aliivibrio salmonicida LFI1238 transposase YP_002264546.1 214523 R 316275 CDS YP_002264547.1 209809009 6961661 complement(216726..217073) 1 NC_011313.1 transposase 217073 6961661 VSAL_II0190 Aliivibrio salmonicida LFI1238 transposase YP_002264547.1 216726 R 316275 CDS YP_002264548.1 209809010 6961662 complement(217070..217384) 1 NC_011313.1 transposase 217384 6961662 VSAL_II0191 Aliivibrio salmonicida LFI1238 transposase YP_002264548.1 217070 R 316275 CDS YP_002264549.1 209809011 6961663 217484..218365 1 NC_011313.1 transposase 218365 6961663 VSAL_II0192 Aliivibrio salmonicida LFI1238 transposase YP_002264549.1 217484 D 316275 CDS YP_002264550.1 209809012 6961665 complement(219030..220415) 1 NC_011313.1 Similar to Acinetobacter baumannii BfmS UniProt:Q2VSW5 (549 aa) fasta scores: E()=5.5e-21, 33.234% id in 334 aa; two-component system sensor protein, histidine kinase 220415 6961665 VSAL_II0194 Aliivibrio salmonicida LFI1238 two-component system sensor protein, histidine kinase YP_002264550.1 219030 R 316275 CDS YP_002264551.1 209809013 6961667 221325..221684 1 NC_011313.1 hypothetical protein 221684 6961667 VSAL_II0196 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264551.1 221325 D 316275 CDS YP_002264552.1 209809014 6961668 221796..222479 1 NC_011313.1 transcriptional activator protein, response regulator 222479 6961668 VSAL_II0197 Aliivibrio salmonicida LFI1238 transcriptional activator protein, response regulator YP_002264552.1 221796 D 316275 CDS YP_002264553.1 209809015 6961669 222484..223824 1 NC_011313.1 Similar to Escherichia coli Sensor kinase CusS UniProt:P77485 (480 aa) fasta scores: E()=1.2e-33, 29.787% id in 470 aa; two-component system sensor protein, histidine kinase 223824 6961669 VSAL_II0198 Aliivibrio salmonicida LFI1238 two-component system sensor protein, histidine kinase YP_002264553.1 222484 D 316275 CDS YP_002264554.1 209809016 6961671 complement(224956..225429) 1 NC_011313.1 methylguanine-DNA--protein-cysteine methyltransferase 225429 ogt 6961671 ogt Aliivibrio salmonicida LFI1238 methylguanine-DNA--protein-cysteine methyltransferase YP_002264554.1 224956 R 316275 CDS YP_002264555.1 209809017 6962546 complement(225434..225739) 1 NC_011313.1 hypothetical protein 225739 6962546 VSAL_II0201 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264555.1 225434 R 316275 CDS YP_002264556.1 209809018 6961672 complement(225928..227121) 1 NC_011313.1 transposase 227121 6961672 VSAL_II0202 Aliivibrio salmonicida LFI1238 transposase YP_002264556.1 225928 R 316275 CDS YP_002264557.1 209809019 6961673 227749..227946 1 NC_011313.1 hypothetical protein 227946 6961673 VSAL_II0203 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264557.1 227749 D 316275 CDS YP_002264558.1 209809020 6961674 228254..228511 1 NC_011313.1 hypothetical protein 228511 6961674 VSAL_II0204 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264558.1 228254 D 316275 CDS YP_002264559.1 209809021 6961675 228601..229203 1 NC_011313.1 hypothetical protein 229203 6961675 VSAL_II0205 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264559.1 228601 D 316275 CDS YP_002264560.1 209809022 6961676 229267..229827 1 NC_011313.1 putative O-acetyltransferase 229827 6961676 VSAL_II0206 Aliivibrio salmonicida LFI1238 putative O-acetyltransferase YP_002264560.1 229267 D 316275 CDS YP_002264561.1 209809023 6961678 complement(231014..232093) 1 NC_011313.1 transposase 232093 6961678 VSAL_II0208 Aliivibrio salmonicida LFI1238 transposase YP_002264561.1 231014 R 316275 CDS YP_002264562.1 209809024 6961680 233207..233839 1 NC_011313.1 putative aldolase 233839 6961680 VSAL_II0210 Aliivibrio salmonicida LFI1238 putative aldolase YP_002264562.1 233207 D 316275 CDS YP_002264563.1 209809025 6961681 233839..234615 1 NC_011313.1 hydroxypyruvate isomerase 234615 hyi 6961681 hyi Aliivibrio salmonicida LFI1238 hydroxypyruvate isomerase YP_002264563.1 233839 D 316275 CDS YP_002264564.1 209809026 6962493 234721..236184 1 NC_011313.1 Similar to Pseudomonas aeruginosa Gluconate permease GnuT UniProt:Q9ZIJ1 (450 aa) fasta scores: E()=1e-34, 29.306% id in 447 aa; gluconate permease 236184 6962493 VSAL_II0212 Aliivibrio salmonicida LFI1238 gluconate permease YP_002264564.1 234721 D 316275 CDS YP_002264565.1 209809027 6961682 complement(236279..236842) 1 NC_011313.1 catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 236842 gfa 6961682 gfa Aliivibrio salmonicida LFI1238 glutathione-dependent formaldehyde-activating protein YP_002264565.1 236279 R 316275 CDS YP_002264566.1 209809028 6962469 237488..238360 1 NC_011313.1 patatin-like phospholipase 238360 6962469 VSAL_II0214 Aliivibrio salmonicida LFI1238 patatin-like phospholipase YP_002264566.1 237488 D 316275 CDS YP_002264567.1 209809029 6961683 238419..239870 1 NC_011313.1 catalase 239870 catA 6961683 catA Aliivibrio salmonicida LFI1238 catalase YP_002264567.1 238419 D 316275 CDS YP_002264568.1 209809030 6962441 240090..241070 1 NC_011313.1 hypothetical protein 241070 6962441 VSAL_II0216 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264568.1 240090 D 316275 CDS YP_002264569.1 209809031 6961684 241306..242493 1 NC_011313.1 chitinase B 242493 6961684 VSAL_II0217 Aliivibrio salmonicida LFI1238 chitinase B YP_002264569.1 241306 D 316275 CDS YP_002264570.1 209809032 6961685 242732..244309 1 NC_011313.1 ABC transporter ATP-binding protein 244309 6961685 VSAL_II0218 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002264570.1 242732 D 316275 CDS YP_002264571.1 209809033 6961686 complement(244432..245919) 1 NC_011313.1 transposase 245919 6961686 VSAL_II0219 Aliivibrio salmonicida LFI1238 transposase YP_002264571.1 244432 R 316275 CDS YP_002264572.1 209809034 7072198 complement(245991..246338) 1 NC_011313.1 transposase 246338 7072198 VSAL_II0220 Aliivibrio salmonicida LFI1238 transposase YP_002264572.1 245991 R 316275 CDS YP_002264573.1 209809035 6961688 complement(246335..246604) 1 NC_011313.1 transposase 246604 6961688 VSAL_II0221 Aliivibrio salmonicida LFI1238 transposase YP_002264573.1 246335 R 316275 CDS YP_002264574.1 209809036 6961689 246909..247592 1 NC_011313.1 exonuclease 247592 6961689 VSAL_II0222 Aliivibrio salmonicida LFI1238 exonuclease YP_002264574.1 246909 D 316275 CDS YP_002264575.1 209809037 6961690 complement(247649..247861) 1 NC_011313.1 Expression may be regulated by Fur; hypothetical protein 247861 6961690 VSAL_II0223 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264575.1 247649 R 316275 CDS YP_002264576.1 209809038 6961691 248032..248610 1 NC_011313.1 TetR family transcriptional regulator 248610 6961691 VSAL_II0224 Aliivibrio salmonicida LFI1238 TetR family transcriptional regulator YP_002264576.1 248032 D 316275 CDS YP_002264577.1 209809039 6961692 248666..249112 1 NC_011313.1 redox-sensitive transcriptional activator SoxR 249112 soxR 6961692 soxR Aliivibrio salmonicida LFI1238 redox-sensitive transcriptional activator SoxR YP_002264577.1 248666 D 316275 CDS YP_002264578.1 209809040 6962585 249754..250005 1 NC_011313.1 hypothetical protein 250005 6962585 VSAL_II0226 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264578.1 249754 D 316275 CDS YP_002264579.1 209809041 6961694 250510..250857 1 NC_011313.1 transposase 250857 6961694 VSAL_II0228 Aliivibrio salmonicida LFI1238 transposase YP_002264579.1 250510 D 316275 CDS YP_002264580.1 209809042 6961695 250929..252416 1 NC_011313.1 transposase 252416 6961695 VSAL_II0229 Aliivibrio salmonicida LFI1238 transposase YP_002264580.1 250929 D 316275 CDS YP_002264581.1 209809043 6961696 complement(252511..253752) 1 NC_011313.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 253752 6961696 VSAL_II0230 Aliivibrio salmonicida LFI1238 serine/threonine transporter SstT YP_002264581.1 252511 R 316275 CDS YP_002264582.1 209809044 6961697 253944..254885 1 NC_011313.1 chemotaxis protein CheV 254885 cheV 6961697 cheV Aliivibrio salmonicida LFI1238 chemotaxis protein CheV YP_002264582.1 253944 D 316275 CDS YP_002264583.1 209809045 6962443 complement(255229..257208) 1 NC_011313.1 Similar to Sulfolobus acidocaldarius Glycogen debranching enzyme (Amylase) TreX UniProt:O05152 (713 aa) fasta scores: E()=3.7e-85, 38.576% id in 674 aa; putative alpha amylase 257208 6962443 VSAL_II0232 Aliivibrio salmonicida LFI1238 putative alpha amylase YP_002264583.1 255229 R 316275 CDS YP_002264584.1 209809046 6962524 257774..258088 1 NC_011313.1 transposase 258088 6962524 VSAL_II0234 Aliivibrio salmonicida LFI1238 transposase YP_002264584.1 257774 D 316275 CDS YP_002264585.1 209809047 6961699 258085..258432 1 NC_011313.1 transposase 258432 6961699 VSAL_II0235 Aliivibrio salmonicida LFI1238 transposase YP_002264585.1 258085 D 316275 CDS YP_002264586.1 209809048 6961700 258504..259991 1 NC_011313.1 transposase 259991 6961700 VSAL_II0236 Aliivibrio salmonicida LFI1238 transposase YP_002264586.1 258504 D 316275 CDS YP_002264587.1 209809049 6961701 complement(260103..260735) 1 NC_011313.1 Similar to Vibrio fischeri Hypothetical protein UniProt:Q5DZB9 (217 aa) fasta scores: E()=2.2e-72, 86.190% id in 210 aa. CDS may be truncated by the insertion of the downstream IS element and subsequent recombination events; hypothetical protein 260735 6961701 VSAL_II0237 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264587.1 260103 R 316275 CDS YP_002264588.1 209809050 6961702 260997..262253 1 NC_011313.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 262253 glgC 6961702 glgC Aliivibrio salmonicida LFI1238 glucose-1-phosphate adenylyltransferase YP_002264588.1 260997 D 316275 CDS YP_002264589.1 209809051 6961703 262243..263691 1 NC_011313.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 263691 glgA 6961703 glgA Aliivibrio salmonicida LFI1238 glycogen synthase YP_002264589.1 262243 D 316275 CDS YP_002264590.1 209809052 6961704 263816..264478 1 NC_011313.1 membrane protein 264478 6961704 VSAL_II0240 Aliivibrio salmonicida LFI1238 membrane protein YP_002264590.1 263816 D 316275 CDS YP_002264591.1 209809053 6961705 264608..264922 1 NC_011313.1 transposase 264922 6961705 VSAL_II0241 Aliivibrio salmonicida LFI1238 transposase YP_002264591.1 264608 D 316275 CDS YP_002264592.1 209809054 6961706 264919..265266 1 NC_011313.1 transposase 265266 6961706 VSAL_II0242 Aliivibrio salmonicida LFI1238 transposase YP_002264592.1 264919 D 316275 CDS YP_002264593.1 209809055 6961707 265338..266825 1 NC_011313.1 transposase 266825 6961707 VSAL_II0243 Aliivibrio salmonicida LFI1238 transposase YP_002264593.1 265338 D 316275 CDS YP_002264594.1 209809056 6961709 268428..271004 1 NC_011313.1 nitrite reductase large subunit 271004 6961709 VSAL_II0245 Aliivibrio salmonicida LFI1238 nitrite reductase large subunit YP_002264594.1 268428 D 316275 CDS YP_002264595.1 209809057 6961710 271060..271356 1 NC_011313.1 nitrite reductase [NAD(P)H] small subunit 271356 6961710 VSAL_II0246 Aliivibrio salmonicida LFI1238 nitrite reductase [NAD(P)H] small subunit YP_002264595.1 271060 D 316275 CDS YP_002264596.1 209809058 6961711 271366..272835 1 NC_011313.1 nitrate transporter 272835 6961711 VSAL_II0247 Aliivibrio salmonicida LFI1238 nitrate transporter YP_002264596.1 271366 D 316275 CDS YP_002264597.1 209809059 6961712 272873..274645 1 NC_011313.1 putative membrane associated protein kinase 274645 6961712 VSAL_II0248 Aliivibrio salmonicida LFI1238 putative membrane associated protein kinase YP_002264597.1 272873 D 316275 CDS YP_002264598.1 209809060 6961713 274816..276681 1 NC_011313.1 Expression may be stress-induced and may be regulated by Fur; hypothetical protein 276681 6961713 VSAL_II0249 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264598.1 274816 D 316275 CDS YP_002264599.1 209809061 6961714 276693..277187 1 NC_011313.1 putative lipoprotein 277187 6961714 VSAL_II0250 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002264599.1 276693 D 316275 CDS YP_002264600.1 209809062 6961715 complement(277234..278424) 1 NC_011313.1 hypothetical protein 278424 6961715 VSAL_II0251 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264600.1 277234 R 316275 CDS YP_002264601.1 209809063 6961716 complement(278788..280092) 1 NC_011313.1 putative extracellular protein 280092 6961716 VSAL_II0252 Aliivibrio salmonicida LFI1238 putative extracellular protein YP_002264601.1 278788 R 316275 CDS YP_002264602.1 209809064 6961717 complement(280345..281604) 1 NC_011313.1 Similar to Vibrio sp. 14a09 Putative 3-hydroxy-3-methylglutaryl coenzyme A reductase UniProt:Q2UXT1 (218 aa) fasta scores: E()=1.2e-72, 91.743% id in 218 aa; putative 3-hydroxy-3-methylglutaryl coenzyme a reductase 281604 6961717 VSAL_II0253 Aliivibrio salmonicida LFI1238 putative 3-hydroxy-3-methylglutaryl coenzyme a reductase YP_002264602.1 280345 R 316275 CDS YP_002264603.1 209809065 6961718 281869..283794 1 NC_011313.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 283794 speA 6961718 speA Aliivibrio salmonicida LFI1238 arginine decarboxylase YP_002264603.1 281869 D 316275 CDS YP_002264604.1 209809066 6962587 284385..285578 1 NC_011313.1 transposase 285578 6962587 VSAL_II0256 Aliivibrio salmonicida LFI1238 transposase YP_002264604.1 284385 D 316275 CDS YP_002264605.1 209809067 6961720 complement(287880..288227) 1 NC_011313.1 transposase 288227 6961720 VSAL_II0258 Aliivibrio salmonicida LFI1238 transposase YP_002264605.1 287880 R 316275 CDS YP_002264606.1 209809068 6961721 complement(288224..288538) 1 NC_011313.1 transposase 288538 6961721 VSAL_II0259 Aliivibrio salmonicida LFI1238 transposase YP_002264606.1 288224 R 316275 CDS YP_002264607.1 209809069 6961722 288638..289519 1 NC_011313.1 transposase 289519 6961722 VSAL_II0260 Aliivibrio salmonicida LFI1238 transposase YP_002264607.1 288638 D 316275 CDS YP_002264608.1 209809070 6961723 289664..290092 1 NC_011313.1 CDS contains a rare Leucine start codon (TTA), or may be truncated by the insertion of the upstream IS element; hypothetical protein 290092 6961723 VSAL_II0261 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264608.1 289664 D 316275 CDS YP_002264609.1 209809071 6961724 290085..291440 1 NC_011313.1 membrane protein 291440 6961724 VSAL_II0262 Aliivibrio salmonicida LFI1238 membrane protein YP_002264609.1 290085 D 316275 CDS YP_002264610.1 209809072 6961725 complement(291527..292363) 1 NC_011313.1 putative short chain dehydrogenase 292363 6961725 VSAL_II0263 Aliivibrio salmonicida LFI1238 putative short chain dehydrogenase YP_002264610.1 291527 R 316275 CDS YP_002264611.1 209809073 6961726 complement(292388..292888) 1 NC_011313.1 hypothetical protein 292888 6961726 VSAL_II0264 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264611.1 292388 R 316275 CDS YP_002264612.1 209809074 6961727 complement(292992..293657) 1 NC_011313.1 hypothetical protein 293657 6961727 VSAL_II0265 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264612.1 292992 R 316275 CDS YP_002264613.1 209809075 6961728 complement(293742..294731) 1 NC_011313.1 hypothetical protein 294731 6961728 VSAL_II0266 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264613.1 293742 R 316275 CDS YP_002264614.1 209809076 6961729 294891..295898 1 NC_011313.1 Similar to Mycobacterium tuberculosis Putative virulence-regulating 38 kDa protein VirS UniProt:Q06861 (340 aa) fasta scores: E()=6e-17, 23.724% id in 333 aa; AraC family transcriptional regulator 295898 6961729 VSAL_II0267 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002264614.1 294891 D 316275 CDS YP_002264615.1 209809077 6961730 complement(295927..296832) 1 NC_011313.1 hypothetical protein 296832 6961730 VSAL_II0268 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264615.1 295927 R 316275 CDS YP_002264616.1 209809078 6961731 297158..300256 1 NC_011313.1 hypothetical protein 300256 6961731 VSAL_II0269 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264616.1 297158 D 316275 CDS YP_002264617.1 209809079 6961732 complement(300387..301874) 1 NC_011313.1 transposase 301874 6961732 VSAL_II0270 Aliivibrio salmonicida LFI1238 transposase YP_002264617.1 300387 R 316275 CDS YP_002264618.1 209809080 6961733 complement(301946..302293) 1 NC_011313.1 transposase 302293 6961733 VSAL_II0271 Aliivibrio salmonicida LFI1238 transposase YP_002264618.1 301946 R 316275 CDS YP_002264619.1 209809081 6962496 304225..305136 1 NC_011313.1 siderophore biosynthesis protein IucB (N6-hydroxylysine acetyl transferase) 305136 iucB 6962496 iucB Aliivibrio salmonicida LFI1238 siderophore biosynthesis protein IucB (N6-hydroxylysine acetyl transferase) YP_002264619.1 304225 D 316275 CDS YP_002264620.1 209809082 6962498 306843..307265 1 NC_011313.1 transposase 307265 6962498 VSAL_II0276 Aliivibrio salmonicida LFI1238 transposase YP_002264620.1 306843 D 316275 CDS YP_002264621.1 209809083 6961736 307283..307849 1 NC_011313.1 transposase 307849 6961736 VSAL_II0277 Aliivibrio salmonicida LFI1238 transposase YP_002264621.1 307283 D 316275 CDS YP_002264622.1 209809084 6961737 308032..309345 1 NC_011313.1 siderophore biosynthesis protein IucD 309345 iucD 6961737 iucD Aliivibrio salmonicida LFI1238 siderophore biosynthesis protein IucD YP_002264622.1 308032 D 316275 CDS YP_002264623.1 209809085 6962499 309454..311625 1 NC_011313.1 Expression may be regulated by Fur; ferric aerobactin receptor 311625 iutA 6962499 iutA Aliivibrio salmonicida LFI1238 ferric aerobactin receptor YP_002264623.1 309454 D 316275 CDS YP_002264624.1 209809086 6962500 311818..312741 1 NC_011313.1 integral membrane protein 312741 6962500 VSAL_II0280 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002264624.1 311818 D 316275 CDS YP_002264625.1 209809087 6961738 312751..313203 1 NC_011313.1 membrane protein 313203 6961738 VSAL_II0281 Aliivibrio salmonicida LFI1238 membrane protein YP_002264625.1 312751 D 316275 CDS YP_002264626.1 209809088 6961740 315229..316554 1 NC_011313.1 transposase 316554 6961740 VSAL_II0283 Aliivibrio salmonicida LFI1238 transposase YP_002264626.1 315229 D 316275 CDS YP_002264627.1 209809089 6961741 complement(316629..317507) 1 NC_011313.1 6-phosphogluconate dehydrogenase 317507 6961741 VSAL_II0284 Aliivibrio salmonicida LFI1238 6-phosphogluconate dehydrogenase YP_002264627.1 316629 R 316275 CDS YP_002264628.1 209809090 6961742 complement(317556..318176) 1 NC_011313.1 arylesterase precursor 318176 6961742 VSAL_II0285 Aliivibrio salmonicida LFI1238 arylesterase precursor YP_002264628.1 317556 R 316275 CDS YP_002264629.1 209809091 6961743 318380..319054 1 NC_011313.1 ABC transporter ATP-binding protein 319054 6961743 VSAL_II0286 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002264629.1 318380 D 316275 CDS YP_002264630.1 209809092 6961744 319054..321501 1 NC_011313.1 permease 321501 6961744 VSAL_II0287 Aliivibrio salmonicida LFI1238 permease YP_002264630.1 319054 D 316275 CDS YP_002264631.1 209809093 6961745 322311..322691 1 NC_011313.1 hypothetical protein 322691 6961745 VSAL_II0288 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264631.1 322311 D 316275 CDS YP_002264632.1 209809094 6961746 322776..323213 1 NC_011313.1 cytochrome b562 323213 6961746 VSAL_II0289 Aliivibrio salmonicida LFI1238 cytochrome b562 YP_002264632.1 322776 D 316275 CDS YP_002264633.1 209809095 6961747 323450..324160 1 NC_011313.1 hypothetical protein 324160 6961747 VSAL_II0290 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264633.1 323450 D 316275 CDS YP_002264634.1 209809096 6961748 324173..325054 1 NC_011313.1 LysR family transcriptional regulator 325054 6961748 VSAL_II0291 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002264634.1 324173 D 316275 CDS YP_002264635.1 209809097 6961749 complement(325122..325349) 1 NC_011313.1 glutaredoxin 325349 6961749 VSAL_II0292 Aliivibrio salmonicida LFI1238 glutaredoxin YP_002264635.1 325122 R 316275 CDS YP_002264636.1 209809098 6961750 complement(325392..325940) 1 NC_011313.1 hypothetical protein 325940 6961750 VSAL_II0293 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264636.1 325392 R 316275 CDS YP_002264637.1 209809099 6961751 complement(326103..327995) 1 NC_011313.1 putative signaling protein 327995 6961751 VSAL_II0294 Aliivibrio salmonicida LFI1238 putative signaling protein YP_002264637.1 326103 R 316275 CDS YP_002264638.1 209809100 6961752 complement(328146..328790) 1 NC_011313.1 sugar transferase 328790 6961752 VSAL_II0295 Aliivibrio salmonicida LFI1238 sugar transferase YP_002264638.1 328146 R 316275 CDS YP_002264639.1 209809101 6961753 complement(328808..329992) 1 NC_011313.1 putative transmembrane glycosyl transferase 329992 6961753 VSAL_II0296 Aliivibrio salmonicida LFI1238 putative transmembrane glycosyl transferase YP_002264639.1 328808 R 316275 CDS YP_002264640.1 209809102 6961754 complement(329989..331077) 1 NC_011313.1 putative glycosyl transferase 331077 6961754 VSAL_II0297 Aliivibrio salmonicida LFI1238 putative glycosyl transferase YP_002264640.1 329989 R 316275 CDS YP_002264641.1 209809103 6961755 complement(331205..332704) 1 NC_011313.1 hypothetical protein 332704 6961755 VSAL_II0298 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264641.1 331205 R 316275 CDS YP_002264642.1 209809104 6961756 complement(332701..333858) 1 NC_011313.1 putative glycosyl transferases 333858 6961756 VSAL_II0299 Aliivibrio salmonicida LFI1238 putative glycosyl transferases YP_002264642.1 332701 R 316275 CDS YP_002264643.1 209809105 6961757 complement(333848..334603) 1 NC_011313.1 hypothetical protein 334603 6961757 VSAL_II0300 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264643.1 333848 R 316275 CDS YP_002264644.1 209809106 6961758 complement(334750..336144) 1 NC_011313.1 O-antigen polymerase 336144 6961758 VSAL_II0301 Aliivibrio salmonicida LFI1238 O-antigen polymerase YP_002264644.1 334750 R 316275 CDS YP_002264645.1 209809107 6961759 complement(336141..337583) 1 NC_011313.1 putative polysaccharide biosynthesis protein 337583 6961759 VSAL_II0302 Aliivibrio salmonicida LFI1238 putative polysaccharide biosynthesis protein YP_002264645.1 336141 R 316275 CDS YP_002264646.1 209809108 6961760 complement(337580..338743) 1 NC_011313.1 putative glycosyl transferase 338743 6961760 VSAL_II0303 Aliivibrio salmonicida LFI1238 putative glycosyl transferase YP_002264646.1 337580 R 316275 CDS YP_002264647.1 209809109 6961761 complement(338736..340016) 1 NC_011313.1 putative glycosyl transferase 340016 6961761 VSAL_II0304 Aliivibrio salmonicida LFI1238 putative glycosyl transferase YP_002264647.1 338736 R 316275 CDS YP_002264648.1 209809110 6961762 complement(340176..341165) 1 NC_011313.1 putative glycosyl transferase 341165 6961762 VSAL_II0305 Aliivibrio salmonicida LFI1238 putative glycosyl transferase YP_002264648.1 340176 R 316275 CDS YP_002264649.1 209809111 6961763 complement(341212..342717) 1 NC_011313.1 two-component response regulator,transcriptional regulatory protein LuxO 342717 luxO 6961763 luxO Aliivibrio salmonicida LFI1238 two-component response regulator,transcriptional regulatory protein LuxO YP_002264649.1 341212 R 316275 CDS YP_002264650.1 209809112 6962516 complement(342757..345024) 1 NC_011313.1 response regulator, histidine kinase 345024 6962516 VSAL_II0307 Aliivibrio salmonicida LFI1238 response regulator, histidine kinase YP_002264650.1 342757 R 316275 CDS YP_002264651.1 209809113 6961764 complement(345063..346583) 1 NC_011313.1 putative response regulator 346583 6961764 VSAL_II0308 Aliivibrio salmonicida LFI1238 putative response regulator YP_002264651.1 345063 R 316275 CDS YP_002264652.1 209809114 6961765 complement(346586..347293) 1 NC_011313.1 Similar to Streptococcus pneumoniae Capsular polysaccharide synthesis protein cps14D UniProt:P72512 (227 aa) fasta scores: E()=7.4e-05, 26.738% id in 187 aa; putative capsular polysaccharide synthesis protein 347293 6961765 VSAL_II0309 Aliivibrio salmonicida LFI1238 putative capsular polysaccharide synthesis protein YP_002264652.1 346586 R 316275 CDS YP_002264653.1 209809115 6961766 complement(347293..349404) 1 NC_011313.1 Similar to Vibrio fischeri Transporter UniProt:Q5DYQ4 (703 aa) fasta scores: E()=0, 90.612% id in 703 aa; polysaccharide biosynthesis/export protein 349404 6961766 VSAL_II0310 Aliivibrio salmonicida LFI1238 polysaccharide biosynthesis/export protein YP_002264653.1 347293 R 316275 CDS YP_002264654.1 209809116 6961767 complement(349419..350246) 1 NC_011313.1 outer membrane protein, OmpA family 350246 6961767 VSAL_II0311 Aliivibrio salmonicida LFI1238 outer membrane protein, OmpA family YP_002264654.1 349419 R 316275 CDS YP_002264655.1 209809117 6961768 complement(350282..350599) 1 NC_011313.1 hypothetical protein 350599 6961768 VSAL_II0312 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264655.1 350282 R 316275 CDS YP_002264656.1 209809118 6961769 351006..353117 1 NC_011313.1 Expression may be regulated by Fur; hypothetical protein 353117 6961769 VSAL_II0313 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264656.1 351006 D 316275 CDS YP_002264657.1 209809119 6961770 353132..353623 1 NC_011313.1 putative lipoprotein 353623 6961770 VSAL_II0314 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002264657.1 353132 D 316275 CDS YP_002264658.1 209809120 6961771 complement(353726..355456) 1 NC_011313.1 putative response regulator 355456 6961771 VSAL_II0315 Aliivibrio salmonicida LFI1238 putative response regulator YP_002264658.1 353726 R 316275 CDS YP_002264659.1 209809121 6961772 complement(355466..358141) 1 NC_011313.1 response regulator, histidine kinase 358141 6961772 VSAL_II0316 Aliivibrio salmonicida LFI1238 response regulator, histidine kinase YP_002264659.1 355466 R 316275 CDS YP_002264660.1 209809122 6961773 358216..358698 1 NC_011313.1 hypothetical protein 358698 6961773 VSAL_II0317 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264660.1 358216 D 316275 CDS YP_002264661.1 209809123 6961774 358702..359760 1 NC_011313.1 hypothetical protein 359760 6961774 VSAL_II0318 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264661.1 358702 D 316275 CDS YP_002264662.1 209809124 6961775 359989..360870 1 NC_011313.1 RNA polymerase sigma factor 360870 rpoS 6961775 rpoS Aliivibrio salmonicida LFI1238 RNA polymerase sigma factor YP_002264662.1 359989 D 316275 CDS YP_002264663.1 209809125 6962575 360933..362528 1 NC_011313.1 putative membrane associated signaling protein 362528 6962575 VSAL_II0320 Aliivibrio salmonicida LFI1238 putative membrane associated signaling protein YP_002264663.1 360933 D 316275 CDS YP_002264664.1 209809126 6961776 362701..364563 1 NC_011313.1 Similar to Escherichia coli Cellulose synthase catalytic subunit BcsA UniProt:P37653 (872 aa) fasta scores: E()=1.9e-14, 26.644% id in 578 aa; putative glycosyl transferase 364563 6961776 VSAL_II0321 Aliivibrio salmonicida LFI1238 putative glycosyl transferase YP_002264664.1 362701 D 316275 CDS YP_002264665.1 209809127 6961777 364553..365872 1 NC_011313.1 hypothetical protein 365872 6961777 VSAL_II0322 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264665.1 364553 D 316275 CDS YP_002264666.1 209809128 6961778 365899..367302 1 NC_011313.1 putative lipoprotein 367302 6961778 VSAL_II0323 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002264666.1 365899 D 316275 CDS YP_002264667.1 209809129 6961779 367305..368705 1 NC_011313.1 putative lipoprotein 368705 6961779 VSAL_II0324 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002264667.1 367305 D 316275 CDS YP_002264668.1 209809130 6961780 368705..369676 1 NC_011313.1 hypothetical protein 369676 6961780 VSAL_II0325 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264668.1 368705 D 316275 CDS YP_002264669.1 209809131 6961781 complement(369702..370142) 1 NC_011313.1 hypothetical protein 370142 6961781 VSAL_II0326 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264669.1 369702 R 316275 CDS YP_002264670.1 209809132 6961782 complement(370162..371307) 1 NC_011313.1 putative nucleotidyl transferase 371307 6961782 VSAL_II0327 Aliivibrio salmonicida LFI1238 putative nucleotidyl transferase YP_002264670.1 370162 R 316275 CDS YP_002264671.1 209809133 6961783 complement(371321..371614) 1 NC_011313.1 CDS contains a rare Leucine start codon (CTT), or may have an alternative translational start; putative anti-sigma F factor antagonist 371614 6961783 VSAL_II0328 Aliivibrio salmonicida LFI1238 putative anti-sigma F factor antagonist YP_002264671.1 371321 R 316275 CDS YP_002264672.1 209809134 6961784 complement(371605..372852) 1 NC_011313.1 putative response regulator 372852 6961784 VSAL_II0329 Aliivibrio salmonicida LFI1238 putative response regulator YP_002264672.1 371605 R 316275 CDS YP_002264673.1 209809135 6961785 373048..374316 1 NC_011313.1 hypothetical protein 374316 6961785 VSAL_II0330 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264673.1 373048 D 316275 CDS YP_002264674.1 209809136 6961786 374479..375486 1 NC_011313.1 hypothetical protein 375486 6961786 VSAL_II0331 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264674.1 374479 D 316275 CDS YP_002264675.1 209809137 6961788 376245..376559 1 NC_011313.1 transposase 376559 6961788 VSAL_II0333 Aliivibrio salmonicida LFI1238 transposase YP_002264675.1 376245 D 316275 CDS YP_002264676.1 209809138 6961789 376556..376903 1 NC_011313.1 transposase 376903 6961789 VSAL_II0334 Aliivibrio salmonicida LFI1238 transposase YP_002264676.1 376556 D 316275 CDS YP_002264677.1 209809139 6961790 376975..378462 1 NC_011313.1 transposase 378462 6961790 VSAL_II0335 Aliivibrio salmonicida LFI1238 transposase YP_002264677.1 376975 D 316275 CDS YP_002264678.1 209809140 6961792 379444..380181 1 NC_011313.1 glycerophosphoryl diester phosphodiesterase 380181 6961792 VSAL_II0337 Aliivibrio salmonicida LFI1238 glycerophosphoryl diester phosphodiesterase YP_002264678.1 379444 D 316275 CDS YP_002264679.1 209809141 6961793 380222..381505 1 NC_011313.1 MFS transporter 381505 6961793 VSAL_II0338 Aliivibrio salmonicida LFI1238 MFS transporter YP_002264679.1 380222 D 316275 CDS YP_002264680.1 209809142 6961794 complement(381591..382400) 1 NC_011313.1 phosphatase 382400 yidA 6961794 yidA Aliivibrio salmonicida LFI1238 phosphatase YP_002264680.1 381591 R 316275 CDS YP_002264681.1 209809143 6962617 382504..383157 1 NC_011313.1 hypothetical protein 383157 6962617 VSAL_II0340 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264681.1 382504 D 316275 CDS YP_002264682.1 209809144 6961795 complement(383889..384830) 1 NC_011313.1 membrane protein 384830 6961795 VSAL_II0341 Aliivibrio salmonicida LFI1238 membrane protein YP_002264682.1 383889 R 316275 CDS YP_002264683.1 209809145 6961796 complement(384949..385278) 1 NC_011313.1 No significant database matches. Expression may be regulated by Fur; hypothetical protein 385278 6961796 VSAL_II0342 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264683.1 384949 R 316275 CDS YP_002264684.1 209809146 6961797 complement(385655..385912) 1 NC_011313.1 putative HTH-type transcriptional regulator 385912 6961797 VSAL_II0343 Aliivibrio salmonicida LFI1238 putative HTH-type transcriptional regulator YP_002264684.1 385655 R 316275 CDS YP_002264685.1 209809147 6961798 complement(385987..386943) 1 NC_011313.1 putative HTH-type transcriptional regulator 386943 6961798 VSAL_II0344 Aliivibrio salmonicida LFI1238 putative HTH-type transcriptional regulator YP_002264685.1 385987 R 316275 CDS YP_002264686.1 209809148 6961799 387052..387327 1 NC_011313.1 membrane protein 387327 6961799 VSAL_II0345 Aliivibrio salmonicida LFI1238 membrane protein YP_002264686.1 387052 D 316275 CDS YP_002264687.1 209809149 6961800 complement(387592..388551) 1 NC_011313.1 putative nuclease 388551 6961800 VSAL_II0346 Aliivibrio salmonicida LFI1238 putative nuclease YP_002264687.1 387592 R 316275 CDS YP_002264688.1 209809150 6961802 complement(389899..390465) 1 NC_011313.1 transposase 390465 6961802 VSAL_II0348 Aliivibrio salmonicida LFI1238 transposase YP_002264688.1 389899 R 316275 CDS YP_002264689.1 209809151 6961803 complement(390483..390905) 1 NC_011313.1 transposase 390905 6961803 VSAL_II0349 Aliivibrio salmonicida LFI1238 transposase YP_002264689.1 390483 R 316275 CDS YP_002264690.1 209809152 6961804 391094..392491 1 NC_011313.1 hypothetical protein 392491 6961804 VSAL_II0350 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264690.1 391094 D 316275 CDS YP_002264691.1 209809153 6961805 392565..393788 1 NC_011313.1 outer membrane protein transport protein 393788 6961805 VSAL_II0351 Aliivibrio salmonicida LFI1238 outer membrane protein transport protein YP_002264691.1 392565 D 316275 CDS YP_002264692.1 209809154 6961806 393906..395561 1 NC_011313.1 membrane associated sultatease 395561 6961806 VSAL_II0352 Aliivibrio salmonicida LFI1238 membrane associated sultatease YP_002264692.1 393906 D 316275 CDS YP_002264693.1 209809155 6961807 395890..396615 1 NC_011313.1 No significant database matches. Expression may be regulated by Fur; hypothetical protein 396615 6961807 VSAL_II0353 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264693.1 395890 D 316275 CDS YP_002264694.1 209809156 6961808 396633..397319 1 NC_011313.1 putative two-component response regulator 397319 6961808 VSAL_II0354 Aliivibrio salmonicida LFI1238 putative two-component response regulator YP_002264694.1 396633 D 316275 CDS YP_002264695.1 209809157 6961809 397307..398746 1 NC_011313.1 membrane associated sensor histidine kinase 398746 6961809 VSAL_II0355 Aliivibrio salmonicida LFI1238 membrane associated sensor histidine kinase YP_002264695.1 397307 D 316275 CDS YP_002264696.1 209809158 6961810 complement(398805..399461) 1 NC_011313.1 hypothetical protein 399461 6961810 VSAL_II0356 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264696.1 398805 R 316275 CDS YP_002264697.1 209809159 6961811 complement(399534..401072) 1 NC_011313.1 arylsulfatase 401072 6961811 VSAL_II0357 Aliivibrio salmonicida LFI1238 arylsulfatase YP_002264697.1 399534 R 316275 CDS YP_002264698.1 209809160 6961813 402199..403392 1 NC_011313.1 transposase 403392 6961813 VSAL_II0359 Aliivibrio salmonicida LFI1238 transposase YP_002264698.1 402199 D 316275 CDS YP_002264699.1 209809161 6961814 complement(404127..405032) 1 NC_011313.1 LysR family transcriptional regulator 405032 6961814 VSAL_II0360 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002264699.1 404127 R 316275 CDS YP_002264700.1 209809162 6961815 405171..406313 1 NC_011313.1 putative ABC transporter solute-binding protein 406313 6961815 VSAL_II0361 Aliivibrio salmonicida LFI1238 putative ABC transporter solute-binding protein YP_002264700.1 405171 D 316275 CDS YP_002264701.1 209809163 6961816 406755..407645 1 NC_011313.1 hypothetical protein 407645 6961816 VSAL_II0362 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264701.1 406755 D 316275 CDS YP_002264702.1 209809164 6961817 407635..408783 1 NC_011313.1 putative response regulator 408783 6961817 VSAL_II0363 Aliivibrio salmonicida LFI1238 putative response regulator YP_002264702.1 407635 D 316275 CDS YP_002264703.1 209809165 6961818 408851..409078 1 NC_011313.1 hypothetical protein 409078 6961818 VSAL_II0364 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264703.1 408851 D 316275 CDS YP_002264704.1 209809166 6961819 409246..409353 1 NC_011313.1 hypothetical protein 409353 6961819 VSAL_II0365 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264704.1 409246 D 316275 CDS YP_002264705.1 209809167 6961820 409512..409721 1 NC_011313.1 Similar to Actinomycetemcomitans Fimbrial protein Flp precursor UniProt:O66149 (75 aa) fasta scores: E()=0.004, 31.429% id in 70 aa; fimbrial protein, Flp/Fap pilin component 409721 6961820 VSAL_II0366 Aliivibrio salmonicida LFI1238 fimbrial protein, Flp/Fap pilin component YP_002264705.1 409512 D 316275 CDS YP_002264706.1 209809168 6961821 409732..410166 1 NC_011313.1 Similar to Actinomycetemcomitans TadV UniProt:Q7X0M3 (142 aa) fasta scores: E()=5.7e-07, 33.103% id in 145 aa; type IV leader peptidase 410166 tadV 6961821 tadV Aliivibrio salmonicida LFI1238 type IV leader peptidase YP_002264706.1 409732 D 316275 CDS YP_002264707.1 209809169 6962597 410175..410957 1 NC_011313.1 putative Flp pilus assembly protein 410957 rcpC 6962597 rcpC Aliivibrio salmonicida LFI1238 putative Flp pilus assembly protein YP_002264707.1 410175 D 316275 CDS YP_002264708.1 209809170 6962567 410959..412296 1 NC_011313.1 type II/III secretion system protein 412296 6962567 VSAL_II0369 Aliivibrio salmonicida LFI1238 type II/III secretion system protein YP_002264708.1 410959 D 316275 CDS YP_002264709.1 209809171 6961822 412293..412802 1 NC_011313.1 putative lipoprotein 412802 6961822 VSAL_II0370 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002264709.1 412293 D 316275 CDS YP_002264710.1 209809172 6961823 412804..414021 1 NC_011313.1 Similar to Actinobacillus actinomycetemcomitans pilus assembly protein tadZ UniProt:Q8GCZ9 fasta scores: E()=0.002; type II secretion system protein Z 414021 tadZ 6961823 tadZ Aliivibrio salmonicida LFI1238 type II secretion system protein Z YP_002264710.1 412804 D 316275 CDS YP_002264711.1 209809173 6962598 414021..415307 1 NC_011313.1 Similar to Actinomycetemcomitans TadA UniProt:Q9XC06 (426 aa) fasta scores: E()=1.3e-77, 53.318% id in 422 aa; type II/IV secretion system protein, ATP binding domain 415307 tadA 6962598 tadA Aliivibrio salmonicida LFI1238 type II/IV secretion system protein, ATP binding domain YP_002264711.1 414021 D 316275 CDS YP_002264712.1 209809174 6962590 415304..416215 1 NC_011313.1 Similar to Actinomycetemcomitans TadB UniProt:Q9XC05 (295 aa) fasta scores: E()=5.3e-28, 37.000% id in 300 aa; type II secretion system protein F 416215 tadB 6962590 tadB Aliivibrio salmonicida LFI1238 type II secretion system protein F YP_002264712.1 415304 D 316275 CDS YP_002264713.1 209809175 6962591 416212..417090 1 NC_011313.1 Similar to Actinomycetemcomitans TadC UniProt:Q9S4A8 (288 aa) fasta scores: E()=7e-23, 32.667% id in 300 aa; type II secretion system protein F 417090 tadC 6962591 tadC Aliivibrio salmonicida LFI1238 type II secretion system protein F YP_002264713.1 416212 D 316275 CDS YP_002264714.1 209809176 6962592 417098..417841 1 NC_011313.1 Similar to Actinomycetemcomitans TadD UniProt:Q9S4A7 (253 aa) fasta scores: E()=7.1e-13, 30.252% id in 238 aa; putative secretion system protein 417841 tadD 6962592 tadD Aliivibrio salmonicida LFI1238 putative secretion system protein YP_002264714.1 417098 D 316275 CDS YP_002264715.1 209809177 6962593 417828..418316 1 NC_011313.1 Similar to Actinomycetemcomitans TadE UniProt:Q7X0L4 (191 aa) fasta scores: E()=0.75, 24.176% id in 182 aa; membrane associated secretion system protein 418316 tadE 6962593 tadE Aliivibrio salmonicida LFI1238 membrane associated secretion system protein YP_002264715.1 417828 D 316275 CDS YP_002264716.1 209809178 6962594 418300..418839 1 NC_011313.1 Similar to Actinomycetemcomitans TadF UniProt:Q9S4A5 (200 aa) fasta scores: E()=7.2e-08, 31.148% id in 183 aa; membrane associated secretion system protein 418839 tadF 6962594 tadF Aliivibrio salmonicida LFI1238 membrane associated secretion system protein YP_002264716.1 418300 D 316275 CDS YP_002264717.1 209809179 6962595 418842..420110 1 NC_011313.1 Similar to Actinomycetemcomitans TadG UniProt:Q9S4A4 (538 aa) fasta scores: E()=0.00046, 21.012% id in 514 aa; membrane associated secretion system protein 420110 tadG 6962595 tadG Aliivibrio salmonicida LFI1238 membrane associated secretion system protein YP_002264717.1 418842 D 316275 CDS YP_002264718.1 209809180 6961824 420786..421877 1 NC_011313.1 membrane protein 421877 6961824 VSAL_II0380 Aliivibrio salmonicida LFI1238 membrane protein YP_002264718.1 420786 D 316275 CDS YP_002264719.1 209809181 6961825 complement(421913..424120) 1 NC_011313.1 response regulator, histidine kinase 424120 6961825 VSAL_II0381 Aliivibrio salmonicida LFI1238 response regulator, histidine kinase YP_002264719.1 421913 R 316275 CDS YP_002264720.1 209809182 6961826 complement(424141..424536) 1 NC_011313.1 hypothetical protein 424536 6961826 VSAL_II0382 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264720.1 424141 R 316275 CDS YP_002264721.1 209809183 6961827 424775..425635 1 NC_011313.1 hypothetical protein 425635 6961827 VSAL_II0383 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264721.1 424775 D 316275 CDS YP_002264722.1 209809184 6961828 426108..426962 1 NC_011313.1 glycerol uptake facilitator protein 426962 glpF 6961828 glpF Aliivibrio salmonicida LFI1238 glycerol uptake facilitator protein YP_002264722.1 426108 D 316275 CDS YP_002264723.1 209809185 6962475 427043..428557 1 NC_011313.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 428557 glpK 6962475 glpK Aliivibrio salmonicida LFI1238 glycerol kinase YP_002264723.1 427043 D 316275 CDS YP_002264724.1 209809186 6962476 428748..429515 1 NC_011313.1 glycerol-3-phosphate repressor protein 429515 glpR 6962476 glpR Aliivibrio salmonicida LFI1238 glycerol-3-phosphate repressor protein YP_002264724.1 428748 D 316275 CDS YP_002264725.1 209809187 6962477 429697..431244 1 NC_011313.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 431244 glpD 6962477 glpD Aliivibrio salmonicida LFI1238 glycerol-3-phosphate dehydrogenase YP_002264725.1 429697 D 316275 CDS YP_002264726.1 209809188 6961829 complement(432258..433745) 1 NC_011313.1 transposase 433745 6961829 VSAL_II0389 Aliivibrio salmonicida LFI1238 transposase YP_002264726.1 432258 R 316275 CDS YP_002264727.1 209809189 6961830 complement(433817..434164) 1 NC_011313.1 transposase 434164 6961830 VSAL_II0390 Aliivibrio salmonicida LFI1238 transposase YP_002264727.1 433817 R 316275 CDS YP_002264728.1 209809190 6961831 complement(434161..434475) 1 NC_011313.1 transposase 434475 6961831 VSAL_II0391 Aliivibrio salmonicida LFI1238 transposase YP_002264728.1 434161 R 316275 CDS YP_002264729.1 209809191 6961832 complement(434825..436501) 1 NC_011313.1 putative signaling protein 436501 6961832 VSAL_II0392 Aliivibrio salmonicida LFI1238 putative signaling protein YP_002264729.1 434825 R 316275 CDS YP_002264730.1 209809192 7072199 complement(436664..439495) 1 NC_011313.1 response regulator, histidine kinase 439495 7072199 VSAL_II0393x Aliivibrio salmonicida LFI1238 response regulator, histidine kinase YP_002264730.1 436664 R 316275 CDS YP_002264731.1 209809193 6961834 complement(439492..440547) 1 NC_011313.1 Similar to Nitrosomonas europaea Cytochrome c551 peroxidase precursor Ccp UniProt:P55929 (334 aa) fasta scores: E()=7.6e-42, 42.907% id in 289 aa; cytochrome c551 peroxidase 440547 6961834 VSAL_II0394 Aliivibrio salmonicida LFI1238 cytochrome c551 peroxidase YP_002264731.1 439492 R 316275 CDS YP_002264732.1 209809194 6961835 complement(440699..441973) 1 NC_011313.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 441973 glpC 6961835 glpC Aliivibrio salmonicida LFI1238 sn-glycerol-3-phosphate dehydrogenase subunit C YP_002264732.1 440699 R 316275 CDS YP_002264733.1 209809195 6962473 complement(441970..443328) 1 NC_011313.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 443328 glpB 6962473 glpB Aliivibrio salmonicida LFI1238 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_002264733.1 441970 R 316275 CDS YP_002264734.1 209809196 6962472 complement(443325..445007) 1 NC_011313.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 445007 glpA 6962472 glpA Aliivibrio salmonicida LFI1238 sn-glycerol-3-phosphate dehydrogenase subunit A YP_002264734.1 443325 R 316275 CDS YP_002264735.1 209809197 6962471 445302..449459 1 NC_011313.1 Similar to Eubacterium acidaminophilum FdhA-I protein UniProt:Q93V06 (893 aa) fasta scores: E()=1.3e-116, 46.485% id in 882 aa; NAD-dependent formate dehydrogenase subunit alpha 449459 6962471 VSAL_II0398 Aliivibrio salmonicida LFI1238 NAD-dependent formate dehydrogenase subunit alpha YP_002264735.1 445302 D 316275 CDS YP_002264736.1 209809198 6961836 complement(449548..450777) 1 NC_011313.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 450777 pepT 6961836 pepT Aliivibrio salmonicida LFI1238 peptidase T YP_002264736.1 449548 R 316275 CDS YP_002264737.1 209809199 6962549 complement(451057..451440) 1 NC_011313.1 putative HTH-type transcriptional regulator 451440 6962549 VSAL_II0400 Aliivibrio salmonicida LFI1238 putative HTH-type transcriptional regulator YP_002264737.1 451057 R 316275 CDS YP_002264738.1 209809200 6961837 451940..452734 1 NC_011313.1 AraC family transcriptional regulator 452734 6961837 VSAL_II0401 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002264738.1 451940 D 316275 CDS YP_002264739.1 209809201 6961838 452998..453357 1 NC_011313.1 hypothetical protein 453357 6961838 VSAL_II0402 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264739.1 452998 D 316275 CDS YP_002264740.1 209809202 6961839 453450..454661 1 NC_011313.1 Possible alternative translational start site after codon 13; putative membrane associated signaling protein 454661 6961839 VSAL_II0403 Aliivibrio salmonicida LFI1238 putative membrane associated signaling protein YP_002264740.1 453450 D 316275 CDS YP_002264741.1 209809203 6961840 complement(454879..455442) 1 NC_011313.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 455442 6961840 VSAL_II0404 Aliivibrio salmonicida LFI1238 malate synthase YP_002264741.1 454879 R 316275 CDS YP_002264742.1 209809204 6961841 455580..457094 1 NC_011313.1 putative HTH-type transcriptional regulator 457094 6961841 VSAL_II0405 Aliivibrio salmonicida LFI1238 putative HTH-type transcriptional regulator YP_002264742.1 455580 D 316275 CDS YP_002264743.1 209809205 6961842 complement(457152..459068) 1 NC_011313.1 glutathione-regulated potassium-efflux system protein 459068 6961842 VSAL_II0406 Aliivibrio salmonicida LFI1238 glutathione-regulated potassium-efflux system protein YP_002264743.1 457152 R 316275 CDS YP_002264744.1 209809206 6961843 complement(459068..459691) 1 NC_011313.1 putative glutathione-regulated potassium-efflux system ancillary protein 459691 6961843 VSAL_II0407 Aliivibrio salmonicida LFI1238 putative glutathione-regulated potassium-efflux system ancillary protein YP_002264744.1 459068 R 316275 CDS YP_002264745.1 209809207 6961844 complement(459764..460093) 1 NC_011313.1 quaternary ammonium compound-resistance protein 460093 qac 6961844 qac Aliivibrio salmonicida LFI1238 quaternary ammonium compound-resistance protein YP_002264745.1 459764 R 316275 CDS YP_002264746.1 209809208 6962566 complement(460285..460692) 1 NC_011313.1 hypothetical protein 460692 6962566 VSAL_II0409 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264746.1 460285 R 316275 CDS YP_002264747.1 209809209 6961846 461778..463691 1 NC_011313.1 hypothetical protein 463691 6961846 VSAL_II0411 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264747.1 461778 D 316275 CDS YP_002264748.1 209809210 6961848 464477..466996 1 NC_011313.1 hypothetical protein 466996 6961848 VSAL_II0413 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264748.1 464477 D 316275 CDS YP_002264749.1 209809211 6961849 466989..467393 1 NC_011313.1 hypothetical protein 467393 6961849 VSAL_II0414 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264749.1 466989 D 316275 CDS YP_002264750.1 209809212 6961850 467531..467908 1 NC_011313.1 hypothetical protein 467908 6961850 VSAL_II0415 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264750.1 467531 D 316275 CDS YP_002264751.1 209809213 6961851 complement(468079..469251) 1 NC_011313.1 Expression may be regulated by Fur; putative ferredoxin 469251 6961851 VSAL_II0416 Aliivibrio salmonicida LFI1238 putative ferredoxin YP_002264751.1 468079 R 316275 CDS YP_002264752.1 209809214 6961852 complement(469318..470493) 1 NC_011313.1 Similar to Pseudomonas fluorescens ColS protein UniProt:P95472 (425 aa) fasta scores: E()=7.6e-09, 27.469% id in 324 aa; putative sensor kinase protein 470493 6961852 VSAL_II0417 Aliivibrio salmonicida LFI1238 putative sensor kinase protein YP_002264752.1 469318 R 316275 CDS YP_002264753.1 209809215 6961853 complement(470558..471223) 1 NC_011313.1 Similar to Pseudomonas fluorescens ColR protein UniProt:P95471 (227 aa) fasta scores: E()=2.9e-33, 42.273% id in 220 aa; two-component system response regulator 471223 6961853 VSAL_II0418 Aliivibrio salmonicida LFI1238 two-component system response regulator YP_002264753.1 470558 R 316275 CDS YP_002264754.1 209809216 6961854 471381..472262 1 NC_011313.1 transposase 472262 6961854 VSAL_II0419 Aliivibrio salmonicida LFI1238 transposase YP_002264754.1 471381 D 316275 CDS YP_002264755.1 209809217 6961855 472312..473238 1 NC_011313.1 putative lipoprotein 473238 6961855 VSAL_II0420 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002264755.1 472312 D 316275 CDS YP_002264756.1 209809218 6961856 473387..474292 1 NC_011313.1 membrane protein 474292 6961856 VSAL_II0421 Aliivibrio salmonicida LFI1238 membrane protein YP_002264756.1 473387 D 316275 CDS YP_002264757.1 209809219 6961857 complement(474385..475398) 1 NC_011313.1 membrane protein 475398 6961857 VSAL_II0422 Aliivibrio salmonicida LFI1238 membrane protein YP_002264757.1 474385 R 316275 CDS YP_002264758.1 209809220 6961858 475618..476589 1 NC_011313.1 exported serine protease, trypsin elastase 476589 6961858 VSAL_II0423 Aliivibrio salmonicida LFI1238 exported serine protease, trypsin elastase YP_002264758.1 475618 D 316275 CDS YP_002264759.1 209809221 6961859 complement(476655..477782) 1 NC_011313.1 Similar to Cryptococcus curvatus Delta-9 fatty acid desaturase UniProt:P79078 (555 aa) fasta scores: E()=2.6e-45, 44.371% id in 302 aa; putative fatty acid desaturase 477782 6961859 VSAL_II0424 Aliivibrio salmonicida LFI1238 putative fatty acid desaturase YP_002264759.1 476655 R 316275 CDS YP_002264760.1 209809222 6961860 477968..478204 1 NC_011313.1 hypothetical protein 478204 6961860 VSAL_II0425 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264760.1 477968 D 316275 CDS YP_002264761.1 209809223 6961861 complement(478201..479442) 1 NC_011313.1 putative GGDEF protein 479442 6961861 VSAL_II0426 Aliivibrio salmonicida LFI1238 putative GGDEF protein YP_002264761.1 478201 R 316275 CDS YP_002264762.1 209809224 6962418 480174..481196 1 NC_011313.1 Similar to Salmonella typhimurium Outer membrane pore protein E precursor PhoE UniProt:P30705 (350 aa) fasta scores: E()=6.7e-10, 24.148% id in 352 aa; putative outer membrane pore protein 481196 6962418 VSAL_II0427 Aliivibrio salmonicida LFI1238 putative outer membrane pore protein YP_002264762.1 480174 D 316275 CDS YP_002264763.1 209809225 6961863 481328..484492 1 NC_011313.1 integral membrane protein two-component signal transducer 484492 6961863 VSAL_II0428 Aliivibrio salmonicida LFI1238 integral membrane protein two-component signal transducer YP_002264763.1 481328 D 316275 CDS YP_002264764.1 209809226 6961864 484569..485825 1 NC_011313.1 Similar to Escherichia coli Putative ATP-dependent RNA helicase RhlE UniProt:P25888 (454 aa) fasta scores: E()=1.6e-73, 55.303% id in 396 aa; putative ATP-dependent RNA helicase 1 485825 rhlE 6961864 rhlE Aliivibrio salmonicida LFI1238 putative ATP-dependent RNA helicase 1 YP_002264764.1 484569 D 316275 CDS YP_002264765.1 209809227 6961865 487021..488145 1 NC_011313.1 hypothetical protein 488145 6961865 VSAL_II0431 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264765.1 487021 D 316275 CDS YP_002264766.1 209809228 6961866 488157..489209 1 NC_011313.1 membrane protein 489209 6961866 VSAL_II0432 Aliivibrio salmonicida LFI1238 membrane protein YP_002264766.1 488157 D 316275 CDS YP_002264767.1 209809229 6961867 complement(489281..490876) 1 NC_011313.1 Similar to Escherichia coli Secondary glycine betaine transporter BetU UniProt:Q71CH5 (667 aa) fasta scores: E()=8.2e-70, 41.667% id in 504 aa; transporter, BCCT family 490876 6961867 VSAL_II0433 Aliivibrio salmonicida LFI1238 transporter, BCCT family YP_002264767.1 489281 R 316275 CDS YP_002264768.1 209809230 6961868 complement(491077..492207) 1 NC_011313.1 Similar to Escherichia coli Inner membrane protein YibH UniProt:P0AFV0 (378 aa) fasta scores: E()=2.8e-58,45.000% id in 380 aa; secretion protein, HlyD family 492207 6961868 VSAL_II0434 Aliivibrio salmonicida LFI1238 secretion protein, HlyD family YP_002264768.1 491077 R 316275 CDS YP_002264769.1 209809231 6961869 complement(492207..492587) 1 NC_011313.1 hypothetical protein 492587 6961869 VSAL_II0435 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264769.1 492207 R 316275 CDS YP_002264770.1 209809232 6961870 complement(492788..494020) 1 NC_011313.1 membrane associated GGDEF protein 494020 6961870 VSAL_II0436 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002264770.1 492788 R 316275 CDS YP_002264771.1 209809233 6961871 494166..494525 1 NC_011313.1 hypothetical protein 494525 6961871 VSAL_II0437 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264771.1 494166 D 316275 CDS YP_002264772.1 209809234 6961872 complement(494598..496613) 1 NC_011313.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 496613 rnb 6961872 rnb Aliivibrio salmonicida LFI1238 exoribonuclease II YP_002264772.1 494598 R 316275 CDS YP_002264773.1 209809235 6962574 496944..498869 1 NC_011313.1 cold-shock DEAD box protein A (ATP-independent RNA helicase) 498869 deaD 6962574 deaD Aliivibrio salmonicida LFI1238 cold-shock DEAD box protein A (ATP-independent RNA helicase) YP_002264773.1 496944 D 316275 CDS YP_002264774.1 209809236 6962453 499152..499688 1 NC_011313.1 spermidine N1-acetyltransferase 499688 speG 6962453 speG Aliivibrio salmonicida LFI1238 spermidine N1-acetyltransferase YP_002264774.1 499152 D 316275 CDS YP_002264775.1 209809237 6962589 500090..500770 1 NC_011313.1 membrane protein 500770 6962589 VSAL_II0441 Aliivibrio salmonicida LFI1238 membrane protein YP_002264775.1 500090 D 316275 CDS YP_002264776.1 209809238 6961873 complement(501098..502291) 1 NC_011313.1 transposase 502291 6961873 VSAL_II0442 Aliivibrio salmonicida LFI1238 transposase YP_002264776.1 501098 R 316275 CDS YP_002264777.1 209809239 6961875 complement(504288..505172) 1 NC_011313.1 binding-protein-dependent transport system inner membrane protein 505172 6961875 VSAL_II0444 Aliivibrio salmonicida LFI1238 binding-protein-dependent transport system inner membrane protein YP_002264777.1 504288 R 316275 CDS YP_002264778.1 209809240 6961876 complement(505172..505972) 1 NC_011313.1 Similar to Escherichia coli Cystine-binding periplasmic protein precursor FliY UniProt:P0AEM9 (266 aa) fasta scores: E()=8.2e-18, 31.765% id in 255 aa; extracellular solute-binding protein 505972 6961876 VSAL_II0445 Aliivibrio salmonicida LFI1238 extracellular solute-binding protein YP_002264778.1 505172 R 316275 CDS YP_002264779.1 209809241 6961877 complement(505988..506782) 1 NC_011313.1 binding-protein-dependent transport system inner membrane protein 506782 6961877 VSAL_II0446 Aliivibrio salmonicida LFI1238 binding-protein-dependent transport system inner membrane protein YP_002264779.1 505988 R 316275 CDS YP_002264780.1 209809242 6961878 complement(506784..507530) 1 NC_011313.1 amino acid transporter ATP-binding protein 507530 6961878 VSAL_II0447 Aliivibrio salmonicida LFI1238 amino acid transporter ATP-binding protein YP_002264780.1 506784 R 316275 CDS YP_002264781.1 209809243 6961879 507783..508835 1 NC_011313.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 508835 aroG 6961879 aroG Aliivibrio salmonicida LFI1238 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002264781.1 507783 D 316275 CDS YP_002264782.1 209809244 6962432 complement(508913..510577) 1 NC_011313.1 hypothetical protein 510577 6962432 VSAL_II0449 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264782.1 508913 R 316275 CDS YP_002264783.1 209809245 6961880 510699..512438 1 NC_011313.1 5'-nucleotidase 512438 6961880 VSAL_II0450 Aliivibrio salmonicida LFI1238 5'-nucleotidase YP_002264783.1 510699 D 316275 CDS YP_002264784.1 209809246 6961881 512916..513107 1 NC_011313.1 hypothetical protein 513107 6961881 VSAL_II0451 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264784.1 512916 D 316275 CDS YP_002264785.1 209809247 6961882 complement(513187..514773) 1 NC_011313.1 putative GGDEF protein 514773 6961882 VSAL_II0452 Aliivibrio salmonicida LFI1238 putative GGDEF protein YP_002264785.1 513187 R 316275 CDS YP_002264786.1 209809248 6961884 515047..516003 1 NC_011313.1 transposase 516003 6961884 VSAL_II0454 Aliivibrio salmonicida LFI1238 transposase YP_002264786.1 515047 D 316275 CDS YP_002264787.1 209809249 6961885 complement(517426..518406) 1 NC_011313.1 HTH-type transcriptional regulator 518406 6961885 VSAL_II0455 Aliivibrio salmonicida LFI1238 HTH-type transcriptional regulator YP_002264787.1 517426 R 316275 CDS YP_002264788.1 209809250 6961886 complement(518415..519884) 1 NC_011313.1 hypothetical protein 519884 6961886 VSAL_II0456 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264788.1 518415 R 316275 CDS YP_002264789.1 209809251 6961887 complement(519939..520649) 1 NC_011313.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 520649 deoD 6961887 deoD Aliivibrio salmonicida LFI1238 purine nucleoside phosphorylase YP_002264789.1 519939 R 316275 CDS YP_002264790.1 209809252 6962454 520977..521639 1 NC_011313.1 potassium uptake protein KtrA 521639 ktrA 6962454 ktrA Aliivibrio salmonicida LFI1238 potassium uptake protein KtrA YP_002264790.1 520977 D 316275 CDS YP_002264791.1 209809253 6962503 521636..523000 1 NC_011313.1 potassium uptake protein KtrB 523000 ktrB 6962503 ktrB Aliivibrio salmonicida LFI1238 potassium uptake protein KtrB YP_002264791.1 521636 D 316275 CDS YP_002264792.1 209809254 6962504 complement(523092..524165) 1 NC_011313.1 putative mechanosensitive ion channel 524165 6962504 VSAL_II0460 Aliivibrio salmonicida LFI1238 putative mechanosensitive ion channel YP_002264792.1 523092 R 316275 CDS YP_002264793.1 209809255 6961888 complement(524184..524825) 1 NC_011313.1 cytochrome b561 524825 6961888 VSAL_II0461 Aliivibrio salmonicida LFI1238 cytochrome b561 YP_002264793.1 524184 R 316275 CDS YP_002264794.1 209809256 6961889 complement(524839..525306) 1 NC_011313.1 Similar to Alcaligenes xylosoxydans Cytochrome c' UniProt:P00138 (127 aa) fasta scores: E()=1.1e-10, 32.031% id in 128 aa; cytochrome c' 525306 6961889 VSAL_II0462 Aliivibrio salmonicida LFI1238 cytochrome c' YP_002264794.1 524839 R 316275 CDS YP_002264795.1 209809257 6961890 525511..526029 1 NC_011313.1 NUDIX hydrolase 526029 6961890 VSAL_II0463 Aliivibrio salmonicida LFI1238 NUDIX hydrolase YP_002264795.1 525511 D 316275 CDS YP_002264796.1 209809258 6961891 526030..526251 1 NC_011313.1 hypothetical protein 526251 6961891 VSAL_II0464 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264796.1 526030 D 316275 CDS YP_002264797.1 209809259 6961892 complement(526426..527307) 1 NC_011313.1 transposase 527307 6961892 VSAL_II0465 Aliivibrio salmonicida LFI1238 transposase YP_002264797.1 526426 R 316275 CDS YP_002264798.1 209809260 6961894 527865..528770 1 NC_011313.1 putative aldo/keto reductase 528770 6961894 VSAL_II0467 Aliivibrio salmonicida LFI1238 putative aldo/keto reductase YP_002264798.1 527865 D 316275 CDS YP_002264799.1 209809261 6961895 complement(528863..529891) 1 NC_011313.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 529891 pyrC 6961895 pyrC Aliivibrio salmonicida LFI1238 dihydroorotase YP_002264799.1 528863 R 316275 CDS YP_002264800.1 209809262 6962565 530094..530288 1 NC_011313.1 Expression may be stress-induced; hypothetical protein 530288 6962565 VSAL_II0469 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264800.1 530094 D 316275 CDS YP_002264801.1 209809263 6962419 complement(530686..532173) 1 NC_011313.1 transposase 532173 6962419 VSAL_II0470 Aliivibrio salmonicida LFI1238 transposase YP_002264801.1 530686 R 316275 CDS YP_002264802.1 209809264 6961897 complement(532245..532592) 1 NC_011313.1 transposase 532592 6961897 VSAL_II0471 Aliivibrio salmonicida LFI1238 transposase YP_002264802.1 532245 R 316275 CDS YP_002264803.1 209809265 6961898 complement(532589..532903) 1 NC_011313.1 transposase 532903 6961898 VSAL_II0472 Aliivibrio salmonicida LFI1238 transposase YP_002264803.1 532589 R 316275 CDS YP_002264804.1 209809266 6961899 533104..533262 1 NC_011313.1 hypothetical protein 533262 6961899 VSAL_II0473 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264804.1 533104 D 316275 CDS YP_002264805.1 209809267 6961900 complement(533275..534396) 1 NC_011313.1 hypothetical protein 534396 6961900 VSAL_II0474 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264805.1 533275 R 316275 CDS YP_002264806.1 209809268 6961901 complement(534405..535172) 1 NC_011313.1 peptide transport system ATP-binding protein SapF 535172 sapF 6961901 sapF Aliivibrio salmonicida LFI1238 peptide transport system ATP-binding protein SapF YP_002264806.1 534405 R 316275 CDS YP_002264807.1 209809269 6962582 complement(535213..536226) 1 NC_011313.1 peptide transport system ATP-binding protein SapD 536226 sapD 6962582 sapD Aliivibrio salmonicida LFI1238 peptide transport system ATP-binding protein SapD YP_002264807.1 535213 R 316275 CDS YP_002264808.1 209809270 6962581 complement(536226..537113) 1 NC_011313.1 peptide transport system permease SapC 537113 sapC 6962581 sapC Aliivibrio salmonicida LFI1238 peptide transport system permease SapC YP_002264808.1 536226 R 316275 CDS YP_002264809.1 209809271 6962580 complement(537100..538062) 1 NC_011313.1 peptide transport system permease SapB 538062 sapB 6962580 sapB Aliivibrio salmonicida LFI1238 peptide transport system permease SapB YP_002264809.1 537100 R 316275 CDS YP_002264810.1 209809272 6962579 complement(538062..539687) 1 NC_011313.1 peptide transport periplasmic protein SapA 539687 sapA 6962579 sapA Aliivibrio salmonicida LFI1238 peptide transport periplasmic protein SapA YP_002264810.1 538062 R 316275 CDS YP_002264811.1 209809273 6962578 complement(539767..540789) 1 NC_011313.1 psp operon transcriptional activator PspF 540789 pspF 6962578 pspF Aliivibrio salmonicida LFI1238 psp operon transcriptional activator PspF YP_002264811.1 539767 R 316275 CDS YP_002264812.1 209809274 6962561 540997..541662 1 NC_011313.1 phage shock protein A 541662 pspA 6962561 pspA Aliivibrio salmonicida LFI1238 phage shock protein A YP_002264812.1 540997 D 316275 CDS YP_002264813.1 209809275 6962558 541696..541920 1 NC_011313.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 541920 pspB 6962558 pspB Aliivibrio salmonicida LFI1238 phage shock protein B YP_002264813.1 541696 D 316275 CDS YP_002264814.1 209809276 6962559 541920..542306 1 NC_011313.1 phage shock protein C 542306 pspC 6962559 pspC Aliivibrio salmonicida LFI1238 phage shock protein C YP_002264814.1 541920 D 316275 CDS YP_002264815.1 209809277 6962560 542442..543839 1 NC_011313.1 Expression may be stress-induced; hypothetical protein 543839 6962560 VSAL_II0484 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264815.1 542442 D 316275 CDS YP_002264816.1 209809278 6961902 543836..544861 1 NC_011313.1 hypothetical protein 544861 6961902 VSAL_II0485 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264816.1 543836 D 316275 CDS YP_002264817.1 209809279 6962420 545136..545990 1 NC_011313.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 545990 thiD 6962420 thiD Aliivibrio salmonicida LFI1238 phosphomethylpyrimidine kinase YP_002264817.1 545136 D 316275 CDS YP_002264818.1 209809280 6962602 545990..546763 1 NC_011313.1 ABC transporter ATP-binding protein 546763 6962602 VSAL_II0487 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002264818.1 545990 D 316275 CDS YP_002264819.1 209809281 6961904 546756..547574 1 NC_011313.1 putative binding protein-dependent transport system, membrane component 547574 6961904 VSAL_II0488 Aliivibrio salmonicida LFI1238 putative binding protein-dependent transport system, membrane component YP_002264819.1 546756 D 316275 CDS YP_002264820.1 209809282 6961905 547602..548549 1 NC_011313.1 hypothetical protein 548549 6961905 VSAL_II0489 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264820.1 547602 D 316275 CDS YP_002264821.1 209809283 6961906 548583..549245 1 NC_011313.1 Similar to Bacillus subtilis Thiaminase-2 TenA UniProt:P25052 (236 aa) fasta scores: E()=5.4e-10, 28.241% id in 216 aa; putative thiaminase (transcriptional activator TenA) 549245 6961906 VSAL_II0490 Aliivibrio salmonicida LFI1238 putative thiaminase (transcriptional activator TenA) YP_002264821.1 548583 D 316275 CDS YP_002264822.1 209809284 6961907 549309..550103 1 NC_011313.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 550103 thiM 6961907 thiM Aliivibrio salmonicida LFI1238 hydroxyethylthiazole kinase YP_002264822.1 549309 D 316275 CDS YP_002264823.1 209809285 6962604 550113..550733 1 NC_011313.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 550733 thiE 6962604 thiE Aliivibrio salmonicida LFI1238 thiamine-phosphate pyrophosphorylase YP_002264823.1 550113 D 316275 CDS YP_002264824.1 209809286 6962603 complement(550775..551557) 1 NC_011313.1 membrane associated GGDEF protein 551557 6962603 VSAL_II0493 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002264824.1 550775 R 316275 CDS YP_002264825.1 209809287 6961909 complement(553071..553952) 1 NC_011313.1 transposase 553952 6961909 VSAL_II0495 Aliivibrio salmonicida LFI1238 transposase YP_002264825.1 553071 R 316275 CDS YP_002264826.1 209809288 6961910 554101..555219 1 NC_011313.1 glycine cleavage system T protein 555219 6961910 VSAL_II0496 Aliivibrio salmonicida LFI1238 glycine cleavage system T protein YP_002264826.1 554101 D 316275 CDS YP_002264827.1 209809289 6961911 555892..556572 1 NC_011313.1 hypothetical protein 556572 6961911 VSAL_II0497 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264827.1 555892 D 316275 CDS YP_002264828.1 209809290 6961912 complement(556696..557604) 1 NC_011313.1 putative chemotaxis protein, CheW-like 557604 6961912 VSAL_II0498 Aliivibrio salmonicida LFI1238 putative chemotaxis protein, CheW-like YP_002264828.1 556696 R 316275 CDS YP_002264829.1 209809291 6961913 557756..558034 1 NC_011313.1 peptidyl-prolyl cis-trans isomerase C 558034 ppiC 6961913 ppiC Aliivibrio salmonicida LFI1238 peptidyl-prolyl cis-trans isomerase C YP_002264829.1 557756 D 316275 CDS YP_002264830.1 209809292 6962557 complement(558125..559429) 1 NC_011313.1 inosine-guanosine kinase 559429 gsk 6962557 gsk Aliivibrio salmonicida LFI1238 inosine-guanosine kinase YP_002264830.1 558125 R 316275 CDS YP_002264831.1 209809293 6962483 559881..560924 1 NC_011313.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 560924 guaC 6962483 guaC Aliivibrio salmonicida LFI1238 guanosine 5'-monophosphate oxidoreductase YP_002264831.1 559881 D 316275 CDS YP_002264832.1 209809294 6961914 561922..563085 1 NC_011313.1 Similar to Acetobacter pasteurianus ApaLI methylase UniProt:P70750 (429 aa) fasta scores: E()=2.6e-20, 29.815% id in 379 aa; putative C-5 cytosine-specific DNA methylase 563085 6961914 VSAL_II0503 Aliivibrio salmonicida LFI1238 putative C-5 cytosine-specific DNA methylase YP_002264832.1 561922 D 316275 CDS YP_002264833.1 209809295 6961915 563172..566165 1 NC_011313.1 Similar to Bradyrhizobium sp. btai1 ATP-binding region, ATPase-like (Fragment) UniProt:Q35DF7 (804 aa) fasta scores: E()=6.9e-52, 33.213% id in 828 aa; signal transduction protein, histidine kinase 566165 6961915 VSAL_II0504 Aliivibrio salmonicida LFI1238 signal transduction protein, histidine kinase YP_002264833.1 563172 D 316275 CDS YP_002264834.1 209809296 6961916 566162..567949 1 NC_011313.1 hypothetical protein 567949 6961916 VSAL_II0505 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264834.1 566162 D 316275 CDS YP_002264835.1 209809297 6961917 complement(568020..568463) 1 NC_011313.1 Similar to Vibrio phage k139 CI UniProt:Q9XJF9 (215 aa) fasta scores: E()=2.5e-10, 48.113% id in 106 aa; hypothetical protein 568463 6961917 VSAL_II0506 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264835.1 568020 R 316275 CDS YP_002264836.1 209809298 6961918 568679..568921 1 NC_011313.1 hypothetical protein 568921 6961918 VSAL_II0507 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264836.1 568679 D 316275 CDS YP_002264837.1 209809299 6961919 568940..569344 1 NC_011313.1 hypothetical protein 569344 6961919 VSAL_II0508 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264837.1 568940 D 316275 CDS YP_002264838.1 209809300 6961920 complement(569488..569733) 1 NC_011313.1 hypothetical protein 569733 6961920 VSAL_II0509 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264838.1 569488 R 316275 CDS YP_002264839.1 209809301 6961921 570060..570356 1 NC_011313.1 hypothetical protein 570356 6961921 VSAL_II0510 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264839.1 570060 D 316275 CDS YP_002264840.1 209809302 6961922 570635..571147 1 NC_011313.1 [Cu-Zn]; superoxide dismutase 571147 sodC 6961922 sodC Aliivibrio salmonicida LFI1238 superoxide dismutase YP_002264840.1 570635 D 316275 CDS YP_002264841.1 209809303 6962584 571202..571660 1 NC_011313.1 hypothetical protein 571660 6962584 VSAL_II0512 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264841.1 571202 D 316275 CDS YP_002264842.1 209809304 6961923 571862..573202 1 NC_011313.1 membrane associated GGDEF protein 573202 6961923 VSAL_II0513 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002264842.1 571862 D 316275 CDS YP_002264843.1 209809305 6961925 complement(573451..574938) 1 NC_011313.1 transposase 574938 6961925 VSAL_II0515 Aliivibrio salmonicida LFI1238 transposase YP_002264843.1 573451 R 316275 CDS YP_002264844.1 209809306 6961926 complement(575010..575357) 1 NC_011313.1 transposase 575357 6961926 VSAL_II0516 Aliivibrio salmonicida LFI1238 transposase YP_002264844.1 575010 R 316275 CDS YP_002264845.1 209809307 6961927 complement(575354..575668) 1 NC_011313.1 transposase 575668 6961927 VSAL_II0517 Aliivibrio salmonicida LFI1238 transposase YP_002264845.1 575354 R 316275 CDS YP_002264846.1 209809308 6961928 576580..577536 1 NC_011313.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 577536 htrB 6961928 htrB Aliivibrio salmonicida LFI1238 lipid A biosynthesis lauroyl acyltransferase YP_002264846.1 576580 D 316275 CDS YP_002264847.1 209809309 6962488 577788..578744 1 NC_011313.1 transposase 578744 6962488 VSAL_II0519 Aliivibrio salmonicida LFI1238 transposase YP_002264847.1 577788 D 316275 CDS YP_002264848.1 209809310 6961929 complement(578747..580738) 1 NC_011313.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 580738 tktA 6961929 tktA Aliivibrio salmonicida LFI1238 transketolase YP_002264848.1 578747 R 316275 CDS YP_002264849.1 209809311 6962605 complement(580922..581872) 1 NC_011313.1 transaldolase B 581872 talB 6962605 talB Aliivibrio salmonicida LFI1238 transaldolase B YP_002264849.1 580922 R 316275 CDS YP_002264850.1 209809312 6962600 complement(582242..583948) 1 NC_011313.1 hypothetical protein 583948 6962600 VSAL_II0522 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264850.1 582242 R 316275 CDS YP_002264851.1 209809313 6961930 complement(583942..585801) 1 NC_011313.1 hypothetical protein 585801 6961930 VSAL_II0523 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264851.1 583942 R 316275 CDS YP_002264852.1 209809314 6961931 complement(585794..586756) 1 NC_011313.1 hypothetical protein 586756 6961931 VSAL_II0524 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264852.1 585794 R 316275 CDS YP_002264853.1 209809315 6961932 complement(586749..587300) 1 NC_011313.1 hypothetical protein 587300 6961932 VSAL_II0525 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264853.1 586749 R 316275 CDS YP_002264854.1 209809316 6961933 complement(587300..588259) 1 NC_011313.1 hypothetical protein 588259 6961933 VSAL_II0526 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264854.1 587300 R 316275 CDS YP_002264855.1 209809317 6961934 complement(588309..589265) 1 NC_011313.1 ATPase 589265 6961934 VSAL_II0527 Aliivibrio salmonicida LFI1238 ATPase YP_002264855.1 588309 R 316275 CDS YP_002264856.1 209809318 6962487 590879..591079 1 NC_011313.1 hypothetical protein 591079 6962487 VSAL_II0529 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264856.1 590879 D 316275 CDS YP_002264857.1 209809319 6961936 complement(591174..591878) 1 NC_011313.1 hypothetical protein 591878 6961936 VSAL_II0530 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264857.1 591174 R 316275 CDS YP_002264858.1 209809320 6961937 591956..592453 1 NC_011313.1 Similar to Escherichia coli Esterase YdiI UniProt:P77781 (136 aa) fasta scores: E()=5.3e-23, 48.148% id in 135 aa. The CDS appears to be truncated at the N-terminus; putative thioesterase 592453 6961937 VSAL_II0531 Aliivibrio salmonicida LFI1238 putative thioesterase YP_002264858.1 591956 D 316275 CDS YP_002264859.1 209809321 6961938 592475..593299 1 NC_011313.1 hypothetical protein 593299 6961938 VSAL_II0532 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264859.1 592475 D 316275 CDS YP_002264860.1 209809322 6961939 593313..593474 1 NC_011313.1 hypothetical protein 593474 6961939 VSAL_II0533 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264860.1 593313 D 316275 CDS YP_002264861.1 209809323 6961940 complement(593499..594482) 1 NC_011313.1 site-specific recombinase IntIA 594482 intIA 6961940 intIA Aliivibrio salmonicida LFI1238 site-specific recombinase IntIA YP_002264861.1 593499 R 316275 CDS YP_002264862.1 209809324 6961941 598055..598810 1 NC_011313.1 Similar to Vibrio fischeri orfc668-5 (superintegron p668 insert) UniProt:Q84B85 (251 aa) fasta scores: E()=4.5e-83, 99.203% id in 251 aa; membrane protein phage gene 598810 6961941 VSAL_II0536 Aliivibrio salmonicida LFI1238 membrane protein phage gene YP_002264862.1 598055 D 316275 CDS YP_002264863.1 209809325 6961942 599012..599725 1 NC_011313.1 Weakly similar to Streptococcus suis seps16C UniProt:Q5H807 (362 aa) fasta scores: E()=2.6e-06, 27.711% id in 166 aa; hypothetical protein 599725 6961942 VSAL_II0537 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264863.1 599012 D 316275 CDS YP_002264864.1 209809326 6961943 599862..600317 1 NC_011313.1 putative acetyltransferase phage gene 600317 6961943 VSAL_II0538 Aliivibrio salmonicida LFI1238 putative acetyltransferase phage gene YP_002264864.1 599862 D 316275 CDS YP_002264865.1 209809327 6961944 600422..600817 1 NC_011313.1 hypothetical protein 600817 6961944 VSAL_II0539 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264865.1 600422 D 316275 CDS YP_002264866.1 209809328 6961945 600814..601344 1 NC_011313.1 hypothetical protein 601344 6961945 VSAL_II0540 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264866.1 600814 D 316275 CDS YP_002264867.1 209809329 6961946 601353..602048 1 NC_011313.1 hypothetical protein 602048 6961946 VSAL_II0541 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264867.1 601353 D 316275 CDS YP_002264868.1 209809330 6961947 602236..602490 1 NC_011313.1 hypothetical phage-related protein 602490 6961947 VSAL_II0542 Aliivibrio salmonicida LFI1238 hypothetical phage-related protein YP_002264868.1 602236 D 316275 CDS YP_002264869.1 209809331 6961948 602481..602795 1 NC_011313.1 putative plasmid stabilisation system protein 602795 6961948 VSAL_II0543 Aliivibrio salmonicida LFI1238 putative plasmid stabilisation system protein YP_002264869.1 602481 D 316275 CDS YP_002264870.1 209809332 6961949 603039..603389 1 NC_011313.1 hypothetical protein 603389 6961949 VSAL_II0544 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264870.1 603039 D 316275 CDS YP_002264871.1 209809333 6961950 603629..604099 1 NC_011313.1 hypothetical protein 604099 6961950 VSAL_II0545 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264871.1 603629 D 316275 CDS YP_002264872.1 209809334 6961951 604092..604694 1 NC_011313.1 Similar to Escherichia coli Cell filamentation protein fic UniProt:P20605 (200 aa) fasta scores: E()=2.5e-30, 43.878% id in 196 aa; putative Fic-related phage protein 604694 6961951 VSAL_II0546 Aliivibrio salmonicida LFI1238 putative Fic-related phage protein YP_002264872.1 604092 D 316275 CDS YP_002264873.1 209809335 6961952 complement(605386..605655) 1 NC_011313.1 putative plasmid stabilisation system protein 605655 6961952 VSAL_II0547 Aliivibrio salmonicida LFI1238 putative plasmid stabilisation system protein YP_002264873.1 605386 R 316275 CDS YP_002264874.1 209809336 6961953 complement(605648..605926) 1 NC_011313.1 putative RelB antitoxin 605926 6961953 VSAL_II0548 Aliivibrio salmonicida LFI1238 putative RelB antitoxin YP_002264874.1 605648 R 316275 CDS YP_002264875.1 209809337 6961954 complement(606153..607745) 1 NC_011313.1 hypothetical protein 607745 6961954 VSAL_II0549 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264875.1 606153 R 316275 CDS YP_002264876.1 209809338 6961955 complement(607773..608144) 1 NC_011313.1 hypothetical protein 608144 6961955 VSAL_II0550 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264876.1 607773 R 316275 CDS YP_002264877.1 209809339 6961956 complement(608314..608508) 1 NC_011313.1 hypothetical protein 608508 6961956 VSAL_II0551 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264877.1 608314 R 316275 CDS YP_002264878.1 209809340 6961957 608674..608847 1 NC_011313.1 No significant database matches. Expression may be regulated by Fur; hypothetical protein 608847 6961957 VSAL_II0552 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264878.1 608674 D 316275 CDS YP_002264879.1 209809341 6961958 609002..609886 1 NC_011313.1 hypothetical protein 609886 6961958 VSAL_II0553 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264879.1 609002 D 316275 CDS YP_002264880.1 209809342 6961959 610662..610913 1 NC_011313.1 antitoxin 610913 yefM 6961959 yefM Aliivibrio salmonicida LFI1238 antitoxin YP_002264880.1 610662 D 316275 CDS YP_002264881.1 209809343 6962616 610910..611170 1 NC_011313.1 toxin 611170 yoeB 6962616 yoeB Aliivibrio salmonicida LFI1238 toxin YP_002264881.1 610910 D 316275 CDS YP_002264882.1 209809344 6962618 611499..611681 1 NC_011313.1 hypothetical protein 611681 6962618 VSAL_II0556 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264882.1 611499 D 316275 CDS YP_002264883.1 209809345 6961960 611947..613092 1 NC_011313.1 transposase 613092 6961960 VSAL_II0557 Aliivibrio salmonicida LFI1238 transposase YP_002264883.1 611947 D 316275 CDS YP_002264884.1 209809346 6961961 613475..613732 1 NC_011313.1 hypothetical protein 613732 6961961 VSAL_II0558 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264884.1 613475 D 316275 CDS YP_002264885.1 209809347 6961962 613740..614264 1 NC_011313.1 hypothetical protein 614264 6961962 VSAL_II0559 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264885.1 613740 D 316275 CDS YP_002264886.1 209809348 6961963 614957..615361 1 NC_011313.1 hypothetical protein 615361 6961963 VSAL_II0560 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264886.1 614957 D 316275 CDS YP_002264887.1 209809349 6961964 615528..615839 1 NC_011313.1 transposase 615839 6961964 VSAL_II0561 Aliivibrio salmonicida LFI1238 transposase YP_002264887.1 615528 D 316275 CDS YP_002264888.1 209809350 6961965 615836..616672 1 NC_011313.1 CDS contains a rare Leucine start codon (TTA); transposase 616672 6961965 VSAL_II0562 Aliivibrio salmonicida LFI1238 transposase YP_002264888.1 615836 D 316275 CDS YP_002264889.1 209809351 6961967 617151..617399 1 NC_011313.1 hypothetical protein 617399 6961967 VSAL_II0564 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264889.1 617151 D 316275 CDS YP_002264890.1 209809352 6961968 617633..618961 1 NC_011313.1 putative ATP-dependent RNA helicase RhlE 618961 rhlE 6961968 rhlE Aliivibrio salmonicida LFI1238 putative ATP-dependent RNA helicase RhlE YP_002264890.1 617633 D 316275 CDS YP_002264891.1 209809353 6962572 619300..619827 1 NC_011313.1 hypothetical protein 619827 6962572 VSAL_II0566 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264891.1 619300 D 316275 CDS YP_002264892.1 209809354 6961969 complement(619894..620976) 1 NC_011313.1 rod shape-determining protein roda 620976 mrdB 6961969 mrdB Aliivibrio salmonicida LFI1238 rod shape-determining protein roda YP_002264892.1 619894 R 316275 CDS YP_002264893.1 209809355 6962535 complement(621060..621635) 1 NC_011313.1 hypothetical protein 621635 6962535 VSAL_II0568 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264893.1 621060 R 316275 CDS YP_002264894.1 209809356 6961970 complement(621662..623347) 1 NC_011313.1 C-terminal part is similar to Escherichia coli Ribosomal large subunit pseudouridine synthase A RluA UniProt:P0AA37 (218 aa) fasta scores: E()=3e-25, 43.396% id in 212 aa. CDS is extended at the N-terminus in comparison to the Escherichia coli orthologue; putative RNA pseudouridylate synthase 623347 6961970 VSAL_II0569 Aliivibrio salmonicida LFI1238 putative RNA pseudouridylate synthase YP_002264894.1 621662 R 316275 CDS YP_002264895.1 209809357 6961971 complement(623349..625034) 1 NC_011313.1 C-terminal part is similar to Escherichia coli Ribosomal large subunit pseudouridine synthase A RluA UniProt:P0AA37 (218 aa) fasta scores: E()=3.1e-26, 44.292% id in 219 aa. CDS is extended at the N-terminus in comparison to the Escherichia coli orthologue; putative RNA pseudouridylate synthase 625034 6961971 VSAL_II0570 Aliivibrio salmonicida LFI1238 putative RNA pseudouridylate synthase YP_002264895.1 623349 R 316275 CDS YP_002264896.1 209809358 6961972 complement(625154..625390) 1 NC_011313.1 putative RNA binding protein 625390 6961972 VSAL_II0571 Aliivibrio salmonicida LFI1238 putative RNA binding protein YP_002264896.1 625154 R 316275 CDS YP_002264897.1 209809359 6961973 complement(625543..626481) 1 NC_011313.1 outer membrane protein porin 626481 6961973 VSAL_II0572 Aliivibrio salmonicida LFI1238 outer membrane protein porin YP_002264897.1 625543 R 316275 CDS YP_002264898.1 209809360 6961974 complement(626650..627519) 1 NC_011313.1 Expression may be regulated by Fur; hypothetical protein 627519 6961974 VSAL_II0573 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264898.1 626650 R 316275 CDS YP_002264899.1 209809361 6961975 complement(627554..628657) 1 NC_011313.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 628657 anmK 6961975 anmK Aliivibrio salmonicida LFI1238 anhydro-N-acetylmuramic acid kinase YP_002264899.1 627554 R 316275 CDS YP_002264900.1 209809362 6961976 628857..629852 1 NC_011313.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 629852 nagZ 6961976 nagZ Aliivibrio salmonicida LFI1238 beta-hexosaminidase YP_002264900.1 628857 D 316275 CDS YP_002264901.1 209809363 6962542 630004..630948 1 NC_011313.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 630948 treR 6962542 treR Aliivibrio salmonicida LFI1238 trehalose repressor YP_002264901.1 630004 D 316275 CDS YP_002264902.1 209809364 6962613 631097..632521 1 NC_011313.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunit IIBC 632521 treB 6962613 treB Aliivibrio salmonicida LFI1238 PTS system trehalose(maltose)-specific transporter subunit IIBC YP_002264902.1 631097 D 316275 CDS YP_002264903.1 209809365 6962612 632600..634270 1 NC_011313.1 trehalose-6-phosphate hydrolase 634270 treA 6962612 treA Aliivibrio salmonicida LFI1238 trehalose-6-phosphate hydrolase YP_002264903.1 632600 D 316275 CDS YP_002264904.1 209809366 6962611 complement(634373..635818) 1 NC_011313.1 pyruvate kinase II 635818 pykA 6962611 pykA Aliivibrio salmonicida LFI1238 pyruvate kinase II YP_002264904.1 634373 R 316275 CDS YP_002264905.1 209809367 6962564 complement(635923..636603) 1 NC_011313.1 hypothetical protein 636603 6962564 VSAL_II0580 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264905.1 635923 R 316275 CDS YP_002264906.1 209809368 6961977 636751..638001 1 NC_011313.1 protein mlc (making large colonies protein) 638001 mlc 6961977 mlc Aliivibrio salmonicida LFI1238 protein mlc (making large colonies protein) YP_002264906.1 636751 D 316275 CDS YP_002264907.1 209809369 6962530 complement(638108..639208) 1 NC_011313.1 L-allo-threonine aldolase 639208 gly 6962530 gly Aliivibrio salmonicida LFI1238 L-allo-threonine aldolase YP_002264907.1 638108 R 316275 CDS YP_002264908.1 209809370 6962480 639479..641119 1 NC_011313.1 hypothetical protein 641119 6962480 VSAL_II0583 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264908.1 639479 D 316275 CDS YP_002264909.1 209809371 6961978 641147..642595 1 NC_011313.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 642595 yieM 6961978 yieM Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264909.1 641147 D 316275 CDS YP_002264910.1 209809372 6961979 complement(642604..642849) 1 NC_011313.1 hypothetical protein 642849 6961979 VSAL_II0585 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264910.1 642604 R 316275 CDS YP_002264911.1 209809373 6961980 complement(642897..643334) 1 NC_011313.1 hypothetical protein 643334 6961980 VSAL_II0586 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264911.1 642897 R 316275 CDS YP_002264912.1 209809374 6961981 643554..644192 1 NC_011313.1 outer membrane protein, OmpA family 644192 6961981 VSAL_II0587 Aliivibrio salmonicida LFI1238 outer membrane protein, OmpA family YP_002264912.1 643554 D 316275 CDS YP_002264913.1 209809375 6961982 complement(644241..644717) 1 NC_011313.1 putative lipoprotein 644717 6961982 VSAL_II0588 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002264913.1 644241 R 316275 CDS YP_002264914.1 209809376 6961983 645096..645518 1 NC_011313.1 Expression may be stress-induced; hypothetical protein 645518 6961983 VSAL_II0589 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264914.1 645096 D 316275 CDS YP_002264915.1 209809377 6961984 645567..646055 1 NC_011313.1 hypothetical protein 646055 6961984 VSAL_II0590 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264915.1 645567 D 316275 CDS YP_002264916.1 209809378 6961985 646065..647855 1 NC_011313.1 putative membrane associated signaling protein 647855 6961985 VSAL_II0591 Aliivibrio salmonicida LFI1238 putative membrane associated signaling protein YP_002264916.1 646065 D 316275 CDS YP_002264917.1 209809379 6961986 complement(647972..649339) 1 NC_011313.1 membrane protein nucleoside transporter 649339 6961986 VSAL_II0592 Aliivibrio salmonicida LFI1238 membrane protein nucleoside transporter YP_002264917.1 647972 R 316275 CDS YP_002264918.1 209809380 6961987 complement(649611..651257) 1 NC_011313.1 hypothetical protein 651257 6961987 VSAL_II0593 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264918.1 649611 R 316275 CDS YP_002264919.1 209809381 6961988 651448..651681 1 NC_011313.1 hypothetical protein 651681 6961988 VSAL_II0594 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264919.1 651448 D 316275 CDS YP_002264920.1 209809382 6961989 651860..653260 1 NC_011313.1 putative exported oxidoreductase 653260 6961989 VSAL_II0595 Aliivibrio salmonicida LFI1238 putative exported oxidoreductase YP_002264920.1 651860 D 316275 CDS YP_002264921.1 209809383 6961990 653535..653906 1 NC_011313.1 hypothetical protein 653906 6961990 VSAL_II0596 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264921.1 653535 D 316275 CDS YP_002264922.1 209809384 6961991 complement(653915..654613) 1 NC_011313.1 hypothetical protein 654613 6961991 VSAL_II0597 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264922.1 653915 R 316275 CDS YP_002264923.1 209809385 6961992 complement(654831..656069) 1 NC_011313.1 MFS transporter 656069 6961992 VSAL_II0598 Aliivibrio salmonicida LFI1238 MFS transporter YP_002264923.1 654831 R 316275 CDS YP_002264924.1 209809386 6961993 656379..656930 1 NC_011313.1 membrane protein 656930 6961993 VSAL_II0599 Aliivibrio salmonicida LFI1238 membrane protein YP_002264924.1 656379 D 316275 CDS YP_002264925.1 209809387 6961994 657267..657638 1 NC_011313.1 membrane protein 657638 6961994 VSAL_II0600 Aliivibrio salmonicida LFI1238 membrane protein YP_002264925.1 657267 D 316275 CDS YP_002264926.1 209809388 6961995 657737..658771 1 NC_011313.1 putative response regulator 658771 6961995 VSAL_II0601 Aliivibrio salmonicida LFI1238 putative response regulator YP_002264926.1 657737 D 316275 CDS YP_002264927.1 209809389 6961996 658772..659209 1 NC_011313.1 hypothetical protein 659209 6961996 VSAL_II0602 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264927.1 658772 D 316275 CDS YP_002264928.1 209809390 6961997 complement(659254..659562) 1 NC_011313.1 hypothetical protein 659562 6961997 VSAL_II0603 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264928.1 659254 R 316275 CDS YP_002264929.1 209809391 6961998 complement(659663..660076) 1 NC_011313.1 hypothetical protein 660076 6961998 VSAL_II0604 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264929.1 659663 R 316275 CDS YP_002264930.1 209809392 6961999 660232..660897 1 NC_011313.1 hypothetical protein 660897 6961999 VSAL_II0605 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264930.1 660232 D 316275 CDS YP_002264931.1 209809393 6962000 660897..661181 1 NC_011313.1 hypothetical protein 661181 6962000 VSAL_II0606 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264931.1 660897 D 316275 CDS YP_002264932.1 209809394 6962001 complement(661178..662008) 1 NC_011313.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 662008 nadE 6962001 nadE Aliivibrio salmonicida LFI1238 NAD synthetase YP_002264932.1 661178 R 316275 CDS YP_002264933.1 209809395 6962540 662172..662681 1 NC_011313.1 catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP; nicotinic acid mononucleotide adenylyltransferase 662681 6962540 VSAL_II0608 Aliivibrio salmonicida LFI1238 nicotinic acid mononucleotide adenylyltransferase YP_002264933.1 662172 D 316275 CDS YP_002264934.1 209809396 6962002 662688..663200 1 NC_011313.1 hypothetical protein 663200 6962002 VSAL_II0609 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264934.1 662688 D 316275 CDS YP_002264935.1 209809397 6962003 complement(663231..663851) 1 NC_011313.1 hypothetical protein 663851 6962003 VSAL_II0610 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264935.1 663231 R 316275 CDS YP_002264936.1 209809398 6962004 664035..665138 1 NC_011313.1 Expression may be stress-induced; hypothetical protein 665138 6962004 VSAL_II0611 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264936.1 664035 D 316275 CDS YP_002264937.1 209809399 6962006 complement(666095..666865) 1 NC_011313.1 hypothetical protein 666865 6962006 VSAL_II0613 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264937.1 666095 R 316275 CDS YP_002264938.1 209809400 6962007 666910..667119 1 NC_011313.1 cold shock-like protein 667119 6962007 VSAL_II0614 Aliivibrio salmonicida LFI1238 cold shock-like protein YP_002264938.1 666910 D 316275 CDS YP_002264939.1 209809401 6962008 complement(667189..667485) 1 NC_011313.1 hypothetical protein 667485 6962008 VSAL_II0615 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264939.1 667189 R 316275 CDS YP_002264940.1 209809402 6962009 667949..668410 1 NC_011313.1 HTH-type transcriptional regulator LuxT 668410 luxT 6962009 luxT Aliivibrio salmonicida LFI1238 HTH-type transcriptional regulator LuxT YP_002264940.1 667949 D 316275 CDS YP_002264941.1 209809403 6962010 669896..670876 1 NC_011313.1 putative secretion protein, HlyD family 670876 6962010 VSAL_II0618 Aliivibrio salmonicida LFI1238 putative secretion protein, HlyD family YP_002264941.1 669896 D 316275 CDS YP_002264942.1 209809404 6962011 670889..672025 1 NC_011313.1 membrane protein 672025 6962011 VSAL_II0619 Aliivibrio salmonicida LFI1238 membrane protein YP_002264942.1 670889 D 316275 CDS YP_002264943.1 209809405 6962012 672018..673154 1 NC_011313.1 ABC-2 type transporter 673154 6962012 VSAL_II0620 Aliivibrio salmonicida LFI1238 ABC-2 type transporter YP_002264943.1 672018 D 316275 CDS YP_002264944.1 209809406 6962013 673264..673821 1 NC_011313.1 putative outer membrane protein, OmpA family 673821 6962013 VSAL_II0621 Aliivibrio salmonicida LFI1238 putative outer membrane protein, OmpA family YP_002264944.1 673264 D 316275 CDS YP_002264945.1 209809407 6962014 673933..674211 1 NC_011313.1 hypothetical protein 674211 6962014 VSAL_II0622 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264945.1 673933 D 316275 CDS YP_002264946.1 209809408 6962015 674471..676027 1 NC_011313.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 676027 pntA 6962015 pntA Aliivibrio salmonicida LFI1238 NAD(P) transhydrogenase subunit alpha YP_002264946.1 674471 D 316275 CDS YP_002264947.1 209809409 6962553 676039..677415 1 NC_011313.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 677415 pntB 6962553 pntB Aliivibrio salmonicida LFI1238 pyridine nucleotide transhydrogenase YP_002264947.1 676039 D 316275 CDS YP_002264948.1 209809410 6962554 677663..678259 1 NC_011313.1 hypothetical protein 678259 6962554 VSAL_II0625 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264948.1 677663 D 316275 CDS YP_002264949.1 209809411 6962016 complement(678341..678907) 1 NC_011313.1 PhnA protein 678907 6962016 VSAL_II0626 Aliivibrio salmonicida LFI1238 PhnA protein YP_002264949.1 678341 R 316275 CDS YP_002264950.1 209809412 6962017 679323..680186 1 NC_011313.1 hypothetical protein 680186 6962017 VSAL_II0627 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264950.1 679323 D 316275 CDS YP_002264951.1 209809413 6962018 complement(680242..680706) 1 NC_011313.1 hypothetical protein 680706 6962018 VSAL_II0628 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264951.1 680242 R 316275 CDS YP_002264952.1 209809414 6962020 complement(681509..681685) 1 NC_011313.1 phage replication repressor RstR 681685 rstR 6962020 rstR Aliivibrio salmonicida LFI1238 phage replication repressor RstR YP_002264952.1 681509 R 316275 CDS YP_002264953.1 209809415 6962576 681997..683244 1 NC_011313.1 phage replication and integration protein 683244 6962576 VSAL_II0631 Aliivibrio salmonicida LFI1238 phage replication and integration protein YP_002264953.1 681997 D 316275 CDS YP_002264954.1 209809416 6962022 complement(683521..683697) 1 NC_011313.1 phage replication repressor RstR 683697 rstR 6962022 rstR Aliivibrio salmonicida LFI1238 phage replication repressor RstR YP_002264954.1 683521 R 316275 CDS YP_002264955.1 209809417 6962577 684009..685256 1 NC_011313.1 phage replication protein 685256 6962577 VSAL_II0634 Aliivibrio salmonicida LFI1238 phage replication protein YP_002264955.1 684009 D 316275 CDS YP_002264956.1 209809418 6962024 complement(686043..686354) 1 NC_011313.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 686354 6962024 VSAL_II0636 Aliivibrio salmonicida LFI1238 translation initiation factor Sui1 YP_002264956.1 686043 R 316275 CDS YP_002264957.1 209809419 6962025 complement(686398..686748) 1 NC_011313.1 hypothetical protein 686748 6962025 VSAL_II0637 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264957.1 686398 R 316275 CDS YP_002264958.1 209809420 6962026 686913..687830 1 NC_011313.1 Similar to Selenomonas ruminantium Recombinase XerD UniProt:Q845Z5 (328 aa) fasta scores: E()=1.1e-08, 28.571% id in 287 aa; putative phage recombinase 687830 6962026 VSAL_II0638 Aliivibrio salmonicida LFI1238 putative phage recombinase YP_002264958.1 686913 D 316275 CDS YP_002264959.1 209809421 6962027 complement(687846..688877) 1 NC_011313.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 688877 ddl 6962027 ddl Aliivibrio salmonicida LFI1238 D-alanyl-alanine synthetase A YP_002264959.1 687846 R 316275 CDS YP_002264960.1 209809422 6962028 complement(688888..689445) 1 NC_011313.1 putative lipoprotein, may be involved in cell division 689445 6962028 VSAL_II0640 Aliivibrio salmonicida LFI1238 putative lipoprotein, may be involved in cell division YP_002264960.1 688888 R 316275 CDS YP_002264961.1 209809423 6962029 689689..692373 1 NC_011313.1 putative acetyltransferase 692373 6962029 VSAL_II0641 Aliivibrio salmonicida LFI1238 putative acetyltransferase YP_002264961.1 689689 D 316275 CDS YP_002264962.1 209809424 6962031 complement(694196..695077) 1 NC_011313.1 transposase 695077 6962031 VSAL_II0643 Aliivibrio salmonicida LFI1238 transposase YP_002264962.1 694196 R 316275 CDS YP_002264963.1 209809425 6962032 complement(695586..695864) 1 NC_011313.1 hypothetical protein 695864 6962032 VSAL_II0644 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264963.1 695586 R 316275 CDS YP_002264964.1 209809426 6962033 696082..696309 1 NC_011313.1 hypothetical protein 696309 6962033 VSAL_II0645 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264964.1 696082 D 316275 CDS YP_002264965.1 209809427 6962034 complement(696339..696875) 1 NC_011313.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 696875 mogA 6962034 mogA Aliivibrio salmonicida LFI1238 molybdenum cofactor biosynthesis protein MogA YP_002264965.1 696339 R 316275 CDS YP_002264966.1 209809428 6962035 complement(698336..698488) 1 NC_011313.1 hypothetical protein 698488 6962035 VSAL_II0648 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264966.1 698336 R 316275 CDS YP_002264967.1 209809429 6962036 complement(698488..699390) 1 NC_011313.1 hypothetical protein 699390 6962036 VSAL_II0649 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264967.1 698488 R 316275 CDS YP_002264968.1 209809430 6962037 complement(699392..699997) 1 NC_011313.1 Possible alternative translational start site; response regulator 699997 6962037 VSAL_II0650 Aliivibrio salmonicida LFI1238 response regulator YP_002264968.1 699392 R 316275 CDS YP_002264969.1 209809431 6962038 complement(700026..701501) 1 NC_011313.1 membrane associated signal transduction protein,histidine kinase 701501 6962038 VSAL_II0651 Aliivibrio salmonicida LFI1238 membrane associated signal transduction protein,histidine kinase YP_002264969.1 700026 R 316275 CDS YP_002264970.1 209809432 6962039 701942..702931 1 NC_011313.1 hypothetical protein 702931 6962039 VSAL_II0652 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264970.1 701942 D 316275 CDS YP_002264971.1 209809433 6962040 complement(702984..704693) 1 NC_011313.1 putative extracellular solute-binding protein 704693 6962040 VSAL_II0653 Aliivibrio salmonicida LFI1238 putative extracellular solute-binding protein YP_002264971.1 702984 R 316275 CDS YP_002264972.1 209809434 6962041 704823..705620 1 NC_011313.1 HTH-type regulatory protein, AraC family 705620 6962041 VSAL_II0654 Aliivibrio salmonicida LFI1238 HTH-type regulatory protein, AraC family YP_002264972.1 704823 D 316275 CDS YP_002264973.1 209809435 6962043 706576..706857 1 NC_011313.1 hypothetical protein 706857 6962043 VSAL_II0656 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264973.1 706576 D 316275 CDS YP_002264974.1 209809436 6962044 complement(706964..708316) 1 NC_011313.1 Similar to Escherichia coli ATP-dependent RNA helicase SrmB UniProt:P21507 (444 aa) fasta scores: E()=5.9e-47, 37.055% id in 421 aa; ATP-dependent RNA helicase 708316 6962044 VSAL_II0657 Aliivibrio salmonicida LFI1238 ATP-dependent RNA helicase YP_002264974.1 706964 R 316275 CDS YP_002264975.1 209809437 6962045 708479..709306 1 NC_011313.1 hypothetical protein 709306 6962045 VSAL_II0658 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264975.1 708479 D 316275 CDS YP_002264976.1 209809438 6962046 complement(709368..710291) 1 NC_011313.1 outer membrane protein, OmpA family 710291 6962046 VSAL_II0659 Aliivibrio salmonicida LFI1238 outer membrane protein, OmpA family YP_002264976.1 709368 R 316275 CDS YP_002264977.1 209809439 6962047 complement(710294..713809) 1 NC_011313.1 hypothetical protein 713809 6962047 VSAL_II0660 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264977.1 710294 R 316275 CDS YP_002264978.1 209809440 6962048 complement(713852..723934) 1 NC_011313.1 hypothetical protein 723934 6962048 VSAL_II0661 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264978.1 713852 R 316275 CDS YP_002264979.1 209809441 6962049 724246..725046 1 NC_011313.1 Expression may be stress-induced; putative signaling protein 725046 6962049 VSAL_II0662 Aliivibrio salmonicida LFI1238 putative signaling protein YP_002264979.1 724246 D 316275 CDS YP_002264980.1 209809442 6962050 complement(725049..725915) 1 NC_011313.1 integral membrane protein transmembrane transporter 725915 6962050 VSAL_II0663 Aliivibrio salmonicida LFI1238 integral membrane protein transmembrane transporter YP_002264980.1 725049 R 316275 CDS YP_002264981.1 209809443 6962051 complement(726082..726690) 1 NC_011313.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 726690 6962051 VSAL_II0664 Aliivibrio salmonicida LFI1238 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_002264981.1 726082 R 316275 CDS YP_002264982.1 209809444 6962052 complement(726700..728076) 1 NC_011313.1 gluconate permease 728076 6962052 VSAL_II0665 Aliivibrio salmonicida LFI1238 gluconate permease YP_002264982.1 726700 R 316275 CDS YP_002264983.1 209809445 6962053 728236..728760 1 NC_011313.1 thermosensitive gluconokinase 728760 idnK 6962053 idnK Aliivibrio salmonicida LFI1238 thermosensitive gluconokinase YP_002264983.1 728236 D 316275 CDS YP_002264984.1 209809446 6962494 728771..730570 1 NC_011313.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 730570 edd 6962494 edd Aliivibrio salmonicida LFI1238 phosphogluconate dehydratase YP_002264984.1 728771 D 316275 CDS YP_002264985.1 209809447 6962456 complement(730665..731678) 1 NC_011313.1 HTH-type transcriptional regulator GntR 731678 gntR 6962456 gntR Aliivibrio salmonicida LFI1238 HTH-type transcriptional regulator GntR YP_002264985.1 730665 R 316275 CDS YP_002264986.1 209809448 6962482 731955..732890 1 NC_011313.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 732890 rbgA 6962482 rbgA Aliivibrio salmonicida LFI1238 ribosomal biogenesis GTPase YP_002264986.1 731955 D 316275 CDS YP_002264987.1 209809449 6962054 complement(732967..733959) 1 NC_011313.1 putative cobalamin synthesis protein 733959 6962054 VSAL_II0670 Aliivibrio salmonicida LFI1238 putative cobalamin synthesis protein YP_002264987.1 732967 R 316275 CDS YP_002264988.1 209809450 6962055 734170..735993 1 NC_011313.1 Expression may be regulated by Fur; ABC-type multidrug efflux pump, ATP-binding component 735993 vcaM 6962055 vcaM Aliivibrio salmonicida LFI1238 ABC-type multidrug efflux pump, ATP-binding component YP_002264988.1 734170 D 316275 CDS YP_002264989.1 209809451 6962614 736246..737157 1 NC_011313.1 hypothetical protein 737157 6962614 VSAL_II0672 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264989.1 736246 D 316275 CDS YP_002264990.1 209809452 6962056 737377..738600 1 NC_011313.1 sodium/glutamate symport carrier protein (glutamate permease) 738600 gltS 6962056 gltS Aliivibrio salmonicida LFI1238 sodium/glutamate symport carrier protein (glutamate permease) YP_002264990.1 737377 D 316275 CDS YP_002264991.1 209809453 6962478 738870..740093 1 NC_011313.1 sodium/glutamate symport carrier protein (glutamate permease) 740093 gltS 6962478 gltS Aliivibrio salmonicida LFI1238 sodium/glutamate symport carrier protein (glutamate permease) YP_002264991.1 738870 D 316275 CDS YP_002264992.1 209809454 6962479 complement(740171..741799) 1 NC_011313.1 Expression may be regulated by Fur; methyl-accepting chemotaxis protein 741799 6962479 VSAL_II0675 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002264992.1 740171 R 316275 CDS YP_002264993.1 209809455 6962057 complement(742420..743463) 1 NC_011313.1 hypothetical protein 743463 6962057 VSAL_II0676 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264993.1 742420 R 316275 CDS YP_002264994.1 209809456 6962058 complement(743469..744746) 1 NC_011313.1 Similar to Escherichia coli Biofilm PGA synthesis N-glycosyltransferase PgaC UniProt:P75905 (441 aa) fasta scores: E()=9.6e-16, 25.234% id in 428 aa. Expression may be regulated by Fur; putative glycosyl transferase 744746 6962058 VSAL_II0677 Aliivibrio salmonicida LFI1238 putative glycosyl transferase YP_002264994.1 743469 R 316275 CDS YP_002264995.1 209809457 6962059 complement(744934..745314) 1 NC_011313.1 hypothetical protein 745314 6962059 VSAL_II0678 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264995.1 744934 R 316275 CDS YP_002264996.1 209809458 6962061 complement(746329..746619) 1 NC_011313.1 hypothetical protein 746619 6962061 VSAL_II0680 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264996.1 746329 R 316275 CDS YP_002264997.1 209809459 6962062 complement(746766..746990) 1 NC_011313.1 hypothetical protein 746990 6962062 VSAL_II0681 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002264997.1 746766 R 316275 CDS YP_002264998.1 209809460 6962063 747165..747587 1 NC_011313.1 transposase 747587 6962063 VSAL_II0682 Aliivibrio salmonicida LFI1238 transposase YP_002264998.1 747165 D 316275 CDS YP_002264999.1 209809461 6962064 747605..748171 1 NC_011313.1 transposase 748171 6962064 VSAL_II0683 Aliivibrio salmonicida LFI1238 transposase YP_002264999.1 747605 D 316275 CDS YP_002265000.1 209809462 6962065 748667..749335 1 NC_011313.1 Similar to Escherichia coli Inner membrane protein YqjA UniProt:P0AA63 (EMBL:D13328 (220 aa) fasta scores: E()=8.8e-25, 38.967% id in 213 aa. Expression may be regulated by Fur; inner membrane protein 749335 6962065 VSAL_II0684 Aliivibrio salmonicida LFI1238 inner membrane protein YP_002265000.1 748667 D 316275 CDS YP_002265001.1 209809463 6962066 complement(749393..750841) 1 NC_011313.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 750841 gnd 6962066 gnd Aliivibrio salmonicida LFI1238 6-phosphogluconate dehydrogenase YP_002265001.1 749393 R 316275 CDS YP_002265002.1 209809464 6962481 complement(750877..751599) 1 NC_011313.1 6-phosphogluconolactonase 751599 pgl 6962481 pgl Aliivibrio salmonicida LFI1238 6-phosphogluconolactonase YP_002265002.1 750877 R 316275 CDS YP_002265003.1 209809465 6962550 complement(751596..753098) 1 NC_011313.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 753098 zwf 6962550 zwf Aliivibrio salmonicida LFI1238 glucose-6-phosphate 1-dehydrogenase YP_002265003.1 751596 R 316275 CDS YP_002265004.1 209809466 6962619 complement(753249..754295) 1 NC_011313.1 hypothetical protein 754295 6962619 VSAL_II0688 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265004.1 753249 R 316275 CDS YP_002265005.1 209809467 6962067 complement(754329..755210) 1 NC_011313.1 transposase 755210 6962067 VSAL_II0689 Aliivibrio salmonicida LFI1238 transposase YP_002265005.1 754329 R 316275 CDS YP_002265006.1 209809468 6962068 complement(755308..756621) 1 NC_011313.1 Similar to Escherichia coli Biofilm PGA synthesis N-glycosyltransferase PgaC UniProt:P75905 (441 aa) fasta scores: E()=4.6e-16, 25.455% id in 440 aa; putative glucosyl transferase 756621 6962068 VSAL_II0690 Aliivibrio salmonicida LFI1238 putative glucosyl transferase YP_002265006.1 755308 R 316275 CDS YP_002265007.1 209809469 6962069 complement(756614..757972) 1 NC_011313.1 hypothetical protein 757972 6962069 VSAL_II0691 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265007.1 756614 R 316275 CDS YP_002265008.1 209809470 6962070 complement(758106..759350) 1 NC_011313.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 759350 lolE 6962070 lolE Aliivibrio salmonicida LFI1238 outer membrane-specific lipoprotein transporter subunit LolE YP_002265008.1 758106 R 316275 CDS YP_002265009.1 209809471 6962507 complement(759350..760066) 1 NC_011313.1 lipoprotein-releasing system ATP-binding protein 760066 lolD 6962507 lolD Aliivibrio salmonicida LFI1238 lipoprotein-releasing system ATP-binding protein YP_002265009.1 759350 R 316275 CDS YP_002265010.1 209809472 6962506 complement(760059..761267) 1 NC_011313.1 lipoprotein releasing system, transmembrane protein 761267 lolC 6962506 lolC Aliivibrio salmonicida LFI1238 lipoprotein releasing system, transmembrane protein YP_002265010.1 760059 R 316275 CDS YP_002265011.1 209809473 6962505 761451..762020 1 NC_011313.1 hypothetical protein 762020 6962505 VSAL_II0695 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265011.1 761451 D 316275 CDS YP_002265012.1 209809474 6962071 762036..765491 1 NC_011313.1 transcription-repair coupling factor 765491 mfd 6962071 mfd Aliivibrio salmonicida LFI1238 transcription-repair coupling factor YP_002265012.1 762036 D 316275 CDS YP_002265013.1 209809475 6962529 765578..766468 1 NC_011313.1 hypothetical protein 766468 6962529 VSAL_II0697 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265013.1 765578 D 316275 CDS YP_002265014.1 209809476 6962073 766877..767224 1 NC_011313.1 transposase 767224 6962073 VSAL_II0699 Aliivibrio salmonicida LFI1238 transposase YP_002265014.1 766877 D 316275 CDS YP_002265015.1 209809477 6962075 768809..769432 1 NC_011313.1 putative lipoprotein 769432 6962075 VSAL_II0701 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002265015.1 768809 D 316275 CDS YP_002265016.1 209809478 6962076 769457..769930 1 NC_011313.1 Similar to C-terminal part of Aeromonas hydrophila FKBP-type peptidyl-prolyl cis-trans isomerase fkpA precursor UniProt:O08437 (268 aa) fasta scores: E()=8.3e-25, 63.158% id in 133 aa; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 769930 fkpA 6962076 fkpA Aliivibrio salmonicida LFI1238 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA YP_002265016.1 769457 D 316275 CDS YP_002265017.1 209809479 6962461 complement(770002..770667) 1 NC_011313.1 hypothetical protein 770667 6962461 VSAL_II0703 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265017.1 770002 R 316275 CDS YP_002265018.1 209809480 6962077 770776..771480 1 NC_011313.1 histidine utilization repressor 771480 hutC 6962077 hutC Aliivibrio salmonicida LFI1238 histidine utilization repressor YP_002265018.1 770776 D 316275 CDS YP_002265019.1 209809481 6962489 771653..772876 1 NC_011313.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 772876 hutI 6962489 hutI Aliivibrio salmonicida LFI1238 imidazolonepropionase YP_002265019.1 771653 D 316275 CDS YP_002265020.1 209809482 6962491 772885..773919 1 NC_011313.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 773919 6962491 VSAL_II0706 Aliivibrio salmonicida LFI1238 formimidoylglutamase YP_002265020.1 772885 D 316275 CDS YP_002265021.1 209809483 6962078 773953..775647 1 NC_011313.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 775647 hutU 6962078 hutU Aliivibrio salmonicida LFI1238 urocanate hydratase YP_002265021.1 773953 D 316275 CDS YP_002265022.1 209809484 6962492 775737..777269 1 NC_011313.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 777269 hutH 6962492 hutH Aliivibrio salmonicida LFI1238 histidine ammonia-lyase YP_002265022.1 775737 D 316275 CDS YP_002265023.1 209809485 6962615 778754..779005 1 NC_011313.1 hypothetical protein 779005 6962615 VSAL_II0710 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265023.1 778754 D 316275 CDS YP_002265024.1 209809486 6962079 complement(779111..780142) 1 NC_011313.1 hypothetical protein 780142 6962079 VSAL_II0711 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265024.1 779111 R 316275 CDS YP_002265025.1 209809487 6962080 780900..782540 1 NC_011313.1 Expression may be regulated by Fur; methyl-accepting chemotaxis citrate transducer 782540 6962080 VSAL_II0712 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis citrate transducer YP_002265025.1 780900 D 316275 CDS YP_002265026.1 209809488 6962081 complement(782610..783182) 1 NC_011313.1 hypothetical protein 783182 6962081 VSAL_II0713 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265026.1 782610 R 316275 CDS YP_002265027.1 209809489 6962082 complement(783284..786409) 1 NC_011313.1 cation efflux system protein 786409 cusA 6962082 cusA Aliivibrio salmonicida LFI1238 cation efflux system protein YP_002265027.1 783284 R 316275 CDS YP_002265028.1 209809490 6962446 complement(786406..787875) 1 NC_011313.1 Similar to Escherichia coli Cation efflux system protein cusB precursor UniProt:P77239 (407 aa) fasta scores: E()=1.5e-33, 32.927% id in 410 aa; putative cation efflux system protein 787875 6962446 VSAL_II0715 Aliivibrio salmonicida LFI1238 putative cation efflux system protein YP_002265028.1 786406 R 316275 CDS YP_002265029.1 209809491 6962083 complement(787886..789220) 1 NC_011313.1 hypothetical protein 789220 6962083 VSAL_II0716 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265029.1 787886 R 316275 CDS YP_002265030.1 209809492 6962084 complement(789325..789747) 1 NC_011313.1 hypothetical protein 789747 6962084 VSAL_II0717 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265030.1 789325 R 316275 CDS YP_002265031.1 209809493 6962085 790009..791034 1 NC_011313.1 membrane protein 791034 6962085 VSAL_II0718 Aliivibrio salmonicida LFI1238 membrane protein YP_002265031.1 790009 D 316275 CDS YP_002265032.1 209809494 6962086 complement(791084..791935) 1 NC_011313.1 hypothetical protein 791935 6962086 VSAL_II0719 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265032.1 791084 R 316275 CDS YP_002265033.1 209809495 6962087 792147..793328 1 NC_011313.1 putative heme-Cu membrane protein (NnrS) 793328 6962087 VSAL_II0720 Aliivibrio salmonicida LFI1238 putative heme-Cu membrane protein (NnrS) YP_002265033.1 792147 D 316275 CDS YP_002265034.1 209809496 6962088 793484..794944 1 NC_011313.1 PTS system permease for N-acetylglucosamine and glucose 794944 nagE 6962088 nagE Aliivibrio salmonicida LFI1238 PTS system permease for N-acetylglucosamine and glucose YP_002265034.1 793484 D 316275 CDS YP_002265035.1 209809497 6962541 complement(795062..795355) 1 NC_011313.1 hypothetical protein 795355 6962541 VSAL_II0722 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265035.1 795062 R 316275 CDS YP_002265036.1 209809498 6962089 795578..796255 1 NC_011313.1 response regulator 796255 6962089 VSAL_II0723 Aliivibrio salmonicida LFI1238 response regulator YP_002265036.1 795578 D 316275 CDS YP_002265037.1 209809499 6962091 complement(797577..798194) 1 NC_011313.1 molecuar chaperone DnaJ 798194 6962091 VSAL_II0725 Aliivibrio salmonicida LFI1238 molecuar chaperone DnaJ YP_002265037.1 797577 R 316275 CDS YP_002265038.1 209809500 6962092 complement(798269..798601) 1 NC_011313.1 membrane protein 798601 6962092 VSAL_II0726 Aliivibrio salmonicida LFI1238 membrane protein YP_002265038.1 798269 R 316275 CDS YP_002265039.1 209809501 6962093 complement(798746..803218) 1 NC_011313.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 803218 mukB 6962093 mukB Aliivibrio salmonicida LFI1238 cell division protein MukB YP_002265039.1 798746 R 316275 CDS YP_002265040.1 209809502 6962537 complement(803215..803931) 1 NC_011313.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 803931 mukE 6962537 mukE Aliivibrio salmonicida LFI1238 condesin subunit E YP_002265040.1 803215 R 316275 CDS YP_002265041.1 209809503 6962538 complement(803939..805276) 1 NC_011313.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 805276 mukF 6962538 mukF Aliivibrio salmonicida LFI1238 condesin subunit F YP_002265041.1 803939 R 316275 CDS YP_002265042.1 209809504 6962539 complement(805302..806081) 1 NC_011313.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA 806081 6962539 VSAL_II0730 Aliivibrio salmonicida LFI1238 putative metallothionein SmtA YP_002265042.1 805302 R 316275 CDS YP_002265043.1 209809505 6962094 806216..807079 1 NC_011313.1 hypothetical protein 807079 6962094 VSAL_II0731 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265043.1 806216 D 316275 CDS YP_002265044.1 209809506 6962095 complement(807159..807908) 1 NC_011313.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 807908 kdsB 6962095 kdsB Aliivibrio salmonicida LFI1238 3-deoxy-manno-octulosonate cytidylyltransferase YP_002265044.1 807159 R 316275 CDS YP_002265045.1 209809507 6962502 complement(807890..808051) 1 NC_011313.1 Possible alternative translational start; hypothetical protein 808051 6962502 VSAL_II0733 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265045.1 807890 R 316275 CDS YP_002265046.1 209809508 6962096 complement(808068..809075) 1 NC_011313.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 809075 lpxK 6962096 lpxK Aliivibrio salmonicida LFI1238 tetraacyldisaccharide 4'-kinase YP_002265046.1 808068 R 316275 CDS YP_002265047.1 209809509 6962508 complement(809075..810823) 1 NC_011313.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding protein/permease 810823 msbA 6962508 msbA Aliivibrio salmonicida LFI1238 lipid transporter ATP-binding protein/permease YP_002265047.1 809075 R 316275 CDS YP_002265048.1 209809510 6962536 complement(810858..813164) 1 NC_011313.1 putative competence-related protein 813164 6962536 VSAL_II0736 Aliivibrio salmonicida LFI1238 putative competence-related protein YP_002265048.1 810858 R 316275 CDS YP_002265049.1 209809511 6962097 813171..813695 1 NC_011313.1 membrane protein 813695 6962097 VSAL_II0737 Aliivibrio salmonicida LFI1238 membrane protein YP_002265049.1 813171 D 316275 CDS YP_002265050.1 209809512 6962098 complement(814198..815118) 1 NC_011313.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 815118 ppaC 6962098 ppaC Aliivibrio salmonicida LFI1238 putative manganese-dependent inorganic pyrophosphatase YP_002265050.1 814198 R 316275 CDS YP_002265051.1 209809513 6962556 815375..815851 1 NC_011313.1 Similar to Bacteriophage P2 Replication gene A protein (GpA) UniProt:Q06419 (761 aa) fasta scores: E()=1.7e-05, 32.948% id in 173 aa; putative phage replication protein 815851 6962556 VSAL_II0739 Aliivibrio salmonicida LFI1238 putative phage replication protein YP_002265051.1 815375 D 316275 CDS YP_002265052.1 209809514 6962099 815848..816135 1 NC_011313.1 hypothetical protein 816135 6962099 VSAL_II0740 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265052.1 815848 D 316275 CDS YP_002265053.1 209809515 6962100 816178..816411 1 NC_011313.1 Similar to Bacteriophage L-413C Ogr UniProt:Q858U4 (99 aa) fasta scores: E()=6.8e-06, 41.429% id in 70 aa; putative phage zinc-binding transcriptional activator 816411 6962100 VSAL_II0741 Aliivibrio salmonicida LFI1238 putative phage zinc-binding transcriptional activator YP_002265053.1 816178 D 316275 CDS YP_002265054.1 209809516 6962101 complement(816531..817196) 1 NC_011313.1 putative HNH endonuclease 817196 6962101 VSAL_II0742 Aliivibrio salmonicida LFI1238 putative HNH endonuclease YP_002265054.1 816531 R 316275 CDS YP_002265055.1 209809517 6962102 complement(817201..818445) 1 NC_011313.1 hypothetical protein 818445 6962102 VSAL_II0743 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265055.1 817201 R 316275 CDS YP_002265056.1 209809518 6962103 818982..819254 1 NC_011313.1 Weakly similar to Pseudomonas phage PsP3 Late gene activator Pag UniProt:Q37973 (72 aa) fasta scores: E()=0.27, 34.783% id in 69 aa; putative phage zinc-binding transcriptional activator 819254 6962103 VSAL_II0744 Aliivibrio salmonicida LFI1238 putative phage zinc-binding transcriptional activator YP_002265056.1 818982 D 316275 CDS YP_002265057.1 209809519 6962104 819321..820337 1 NC_011313.1 Weakly similar to Bacteriophage HP1 Major capsid protein UniProt:P51720 (336 aa) fasta scores: E()=2e-20,28.025% id in 314 aa; major capsid protein 820337 6962104 VSAL_II0745 Aliivibrio salmonicida LFI1238 major capsid protein YP_002265057.1 819321 D 316275 CDS YP_002265058.1 209809520 6962106 821414..821836 1 NC_011313.1 transposase 821836 6962106 VSAL_II0747 Aliivibrio salmonicida LFI1238 transposase YP_002265058.1 821414 D 316275 CDS YP_002265059.1 209809521 6962107 821854..822420 1 NC_011313.1 transposase 822420 6962107 VSAL_II0748 Aliivibrio salmonicida LFI1238 transposase YP_002265059.1 821854 D 316275 CDS YP_002265060.1 209809522 6962108 823511..823825 1 NC_011313.1 transposase 823825 6962108 VSAL_II0749 Aliivibrio salmonicida LFI1238 transposase YP_002265060.1 823511 D 316275 CDS YP_002265061.1 209809523 6962109 823822..824169 1 NC_011313.1 transposase 824169 6962109 VSAL_II0750 Aliivibrio salmonicida LFI1238 transposase YP_002265061.1 823822 D 316275 CDS YP_002265062.1 209809524 6962110 824241..825728 1 NC_011313.1 transposase 825728 6962110 VSAL_II0751 Aliivibrio salmonicida LFI1238 transposase YP_002265062.1 824241 D 316275 CDS YP_002265063.1 209809525 6962111 825849..826406 1 NC_011313.1 hypothetical protein 826406 6962111 VSAL_II0752 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265063.1 825849 D 316275 CDS YP_002265064.1 209809526 6962112 826564..827232 1 NC_011313.1 outer membrane protein, OmpA family 827232 6962112 VSAL_II0753 Aliivibrio salmonicida LFI1238 outer membrane protein, OmpA family YP_002265064.1 826564 D 316275 CDS YP_002265065.1 209809527 6962113 complement(827377..827547) 1 NC_011313.1 hypothetical protein 827547 6962113 VSAL_II0754 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265065.1 827377 R 316275 CDS YP_002265066.1 209809528 6962114 827604..828302 1 NC_011313.1 membrane protein 828302 6962114 VSAL_II0755 Aliivibrio salmonicida LFI1238 membrane protein YP_002265066.1 827604 D 316275 CDS YP_002265067.1 209809529 6962115 complement(828380..830056) 1 NC_011313.1 methyl-accepting chemotaxis protein 830056 6962115 VSAL_II0756 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002265067.1 828380 R 316275 CDS YP_002265068.1 209809530 6962116 830288..830674 1 NC_011313.1 hypothetical protein 830674 6962116 VSAL_II0757 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265068.1 830288 D 316275 CDS YP_002265069.1 209809531 6962117 830728..832836 1 NC_011313.1 Similar to Salmonella typhimurium Suppressor for copper-sensitivity B precursor ScsB UniProt:O33918 (627 aa) fasta scores: E()=6.7e-55, 38.657% id in 670 aa; putative suppressor for copper-sensitivity B 832836 6962117 VSAL_II0758 Aliivibrio salmonicida LFI1238 putative suppressor for copper-sensitivity B YP_002265069.1 830728 D 316275 CDS YP_002265070.1 209809532 6962118 832836..833372 1 NC_011313.1 Similar to Salmonella typhimurium Suppressor for copper-sensitivity D ScsD UniProt:O33920 (168 aa) fasta scores: E()=3.3e-20, 36.145% id in 166 aa; putative suppressor for copper-sensitivity D 833372 6962118 VSAL_II0759 Aliivibrio salmonicida LFI1238 putative suppressor for copper-sensitivity D YP_002265070.1 832836 D 316275 CDS YP_002265071.1 209809533 6962119 833383..834033 1 NC_011313.1 Similar to Salmonella typhimurium Suppressor for copper-sensitivity C precursor ScsC UniProt:O33919 (207 aa) fasta scores: E()=2.8e-10, 38.136% id in 118 aa; putative suppressor for copper-sensitivity C 834033 6962119 VSAL_II0760 Aliivibrio salmonicida LFI1238 putative suppressor for copper-sensitivity C YP_002265071.1 833383 D 316275 CDS YP_002265072.1 209809534 6962121 835911..836792 1 NC_011313.1 transposase 836792 6962121 VSAL_II0762 Aliivibrio salmonicida LFI1238 transposase YP_002265072.1 835911 D 316275 CDS YP_002265073.1 209809535 6962122 complement(836847..837494) 1 NC_011313.1 putative DNA-binding protein 837494 6962122 VSAL_II0763 Aliivibrio salmonicida LFI1238 putative DNA-binding protein YP_002265073.1 836847 R 316275 CDS YP_002265074.1 209809536 6962123 837752..838132 1 NC_011313.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 838132 gcvH 6962123 gcvH Aliivibrio salmonicida LFI1238 glycine cleavage system protein H YP_002265074.1 837752 D 316275 CDS YP_002265075.1 209809537 6962467 838156..841023 1 NC_011313.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 841023 gcvP 6962467 gcvP Aliivibrio salmonicida LFI1238 glycine dehydrogenase YP_002265075.1 838156 D 316275 CDS YP_002265076.1 209809538 6962468 841210..841524 1 NC_011313.1 transposase 841524 6962468 VSAL_II0766 Aliivibrio salmonicida LFI1238 transposase YP_002265076.1 841210 D 316275 CDS YP_002265077.1 209809539 6962124 841521..841868 1 NC_011313.1 transposase 841868 6962124 VSAL_II0767 Aliivibrio salmonicida LFI1238 transposase YP_002265077.1 841521 D 316275 CDS YP_002265079.1 209809540 6962128 complement(847404..849389) 1 NC_011313.1 methyl-accepting chemotaxis protein 849389 6962128 VSAL_II0771 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002265079.1 847404 R 316275 CDS YP_002265080.1 209809541 6962129 complement(849629..852091) 1 NC_011313.1 trimethylamine-N-oxide reductase precursor 852091 torA 6962129 torA Aliivibrio salmonicida LFI1238 trimethylamine-N-oxide reductase precursor YP_002265080.1 849629 R 316275 CDS YP_002265081.1 209809542 6962610 complement(852115..853293) 1 NC_011313.1 cytochrome c-type protein 853293 6962610 VSAL_II0773 Aliivibrio salmonicida LFI1238 cytochrome c-type protein YP_002265081.1 852115 R 316275 CDS YP_002265082.1 209809543 6962130 complement(853357..853533) 1 NC_011313.1 putative periplasmic nitrate reductase protein NapE 853533 6962130 VSAL_II0774 Aliivibrio salmonicida LFI1238 putative periplasmic nitrate reductase protein NapE YP_002265082.1 853357 R 316275 CDS YP_002265083.1 209809544 6962131 complement(853865..854173) 1 NC_011313.1 hypothetical protein 854173 6962131 VSAL_II0775 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265083.1 853865 R 316275 CDS YP_002265084.1 209809545 6962132 854291..854809 1 NC_011313.1 Expression may be regulated by Fur; hypothetical protein 854809 6962132 VSAL_II0776 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265084.1 854291 D 316275 CDS YP_002265085.1 209809546 6962133 854814..855002 1 NC_011313.1 hypothetical protein 855002 6962133 VSAL_II0777 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265085.1 854814 D 316275 CDS YP_002265086.1 209809547 6962134 855160..856041 1 NC_011313.1 transposase 856041 6962134 VSAL_II0778 Aliivibrio salmonicida LFI1238 transposase YP_002265086.1 855160 D 316275 CDS YP_002265087.1 209809548 6962135 complement(856075..856761) 1 NC_011313.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 856761 6962135 VSAL_II0779 Aliivibrio salmonicida LFI1238 nucleotidase YP_002265087.1 856075 R 316275 CDS YP_002265088.1 209809549 6962136 complement(856793..857884) 1 NC_011313.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 857884 modC 6962136 modC Aliivibrio salmonicida LFI1238 molybdate transporter ATP-binding protein YP_002265088.1 856793 R 316275 CDS YP_002265089.1 209809550 6962533 complement(857886..858575) 1 NC_011313.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 858575 modB 6962533 modB Aliivibrio salmonicida LFI1238 molybdate ABC transporter permease YP_002265089.1 857886 R 316275 CDS YP_002265090.1 209809551 6962532 complement(858575..859309) 1 NC_011313.1 molybdate-binding periplasmic protein ModA 859309 modA 6962532 modA Aliivibrio salmonicida LFI1238 molybdate-binding periplasmic protein ModA YP_002265090.1 858575 R 316275 CDS YP_002265091.1 209809552 6962531 complement(859322..860809) 1 NC_011313.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 860809 cobQ 6962531 cobQ Aliivibrio salmonicida LFI1238 cobyric acid synthase YP_002265091.1 859322 R 316275 CDS YP_002265092.1 209809553 6962444 861045..861422 1 NC_011313.1 hypothetical protein 861422 6962444 VSAL_II0784 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265092.1 861045 D 316275 CDS YP_002265093.1 209809554 6962137 861505..862044 1 NC_011313.1 hypothetical protein 862044 6962137 VSAL_II0785 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265093.1 861505 D 316275 CDS YP_002265094.1 209809555 6962138 862397..863698 1 NC_011313.1 CDS contains a rare Leucine start codon (TTA); transglycosylase 863698 6962138 VSAL_II0786 Aliivibrio salmonicida LFI1238 transglycosylase YP_002265094.1 862397 D 316275 CDS YP_002265095.1 209809556 6962139 863816..865234 1 NC_011313.1 Similar to Escherichia coli Lytic transglycosylase Slt70 (PDB 1QSA), evalue=4e-09 identity=(49, 166); putative transglycosylase protein 865234 6962139 VSAL_II0787 Aliivibrio salmonicida LFI1238 putative transglycosylase protein YP_002265095.1 863816 D 316275 CDS YP_002265096.1 209809557 6962140 complement(865346..866014) 1 NC_011313.1 putative lipoprotein 866014 6962140 VSAL_II0788 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002265096.1 865346 R 316275 CDS YP_002265097.1 209809558 6962141 complement(866085..867272) 1 NC_011313.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 867272 6962141 VSAL_II0789 Aliivibrio salmonicida LFI1238 aromatic amino acid aminotransferase YP_002265097.1 866085 R 316275 CDS YP_002265098.1 209809559 6962142 complement(867363..867833) 1 NC_011313.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 867833 nrdG 6962142 nrdG Aliivibrio salmonicida LFI1238 anaerobic ribonucleotide reductase-activating protein YP_002265098.1 867363 R 316275 CDS YP_002265099.1 209809560 6962545 complement(867833..869953) 1 NC_011313.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 869953 nrdD 6962545 nrdD Aliivibrio salmonicida LFI1238 anaerobic ribonucleoside triphosphate reductase YP_002265099.1 867833 R 316275 CDS YP_002265100.1 209809561 6962544 870116..871081 1 NC_011313.1 membrane protein 871081 6962544 VSAL_II0792 Aliivibrio salmonicida LFI1238 membrane protein YP_002265100.1 870116 D 316275 CDS YP_002265101.1 209809562 6962143 complement(871164..871349) 1 NC_011313.1 hypothetical protein 871349 6962143 VSAL_II0793 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265101.1 871164 R 316275 CDS YP_002265102.1 209809563 6962144 complement(871445..872005) 1 NC_011313.1 DNA-3-methyladenine glycosylase I 872005 tag 6962144 tag Aliivibrio salmonicida LFI1238 DNA-3-methyladenine glycosylase I YP_002265102.1 871445 R 316275 CDS YP_002265103.1 209809564 6962599 872126..872566 1 NC_011313.1 membrane protein 872566 6962599 VSAL_II0795 Aliivibrio salmonicida LFI1238 membrane protein YP_002265103.1 872126 D 316275 CDS YP_002265104.1 209809565 6962145 872563..873129 1 NC_011313.1 hypothetical protein 873129 6962145 VSAL_II0796 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265104.1 872563 D 316275 CDS YP_002265105.1 209809566 6962146 873183..873629 1 NC_011313.1 hypothetical protein 873629 6962146 VSAL_II0797 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265105.1 873183 D 316275 CDS YP_002265106.1 209809567 6962147 873731..874627 1 NC_011313.1 Possible alternative translational start site after codon 21; integral membrane protein 874627 6962147 VSAL_II0798 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002265106.1 873731 D 316275 CDS YP_002265107.1 209809568 6962148 complement(874663..874842) 1 NC_011313.1 hypothetical protein 874842 6962148 VSAL_II0799 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265107.1 874663 R 316275 CDS YP_002265108.1 209809569 6962149 complement(874885..875265) 1 NC_011313.1 hypothetical protein 875265 6962149 VSAL_II0800 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265108.1 874885 R 316275 CDS YP_002265109.1 209809570 6962151 complement(878938..879504) 1 NC_011313.1 transposase 879504 6962151 VSAL_II0802 Aliivibrio salmonicida LFI1238 transposase YP_002265109.1 878938 R 316275 CDS YP_002265110.1 209809571 6962152 complement(879522..879944) 1 NC_011313.1 transposase 879944 6962152 VSAL_II0803 Aliivibrio salmonicida LFI1238 transposase YP_002265110.1 879522 R 316275 CDS YP_002265111.1 209809572 6962154 complement(880910..881518) 1 NC_011313.1 hypothetical protein 881518 6962154 VSAL_II0805 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265111.1 880910 R 316275 CDS YP_002265112.1 209809573 6962155 complement(881561..884884) 1 NC_011313.1 hypothetical protein 884884 6962155 VSAL_II0806 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265112.1 881561 R 316275 CDS YP_002265113.1 209809574 6962156 885024..885446 1 NC_011313.1 transposase 885446 6962156 VSAL_II0807 Aliivibrio salmonicida LFI1238 transposase YP_002265113.1 885024 D 316275 CDS YP_002265114.1 209809575 6962157 885464..886030 1 NC_011313.1 transposase 886030 6962157 VSAL_II0808 Aliivibrio salmonicida LFI1238 transposase YP_002265114.1 885464 D 316275 CDS YP_002265115.1 209809576 6962158 complement(886357..887238) 1 NC_011313.1 transposase 887238 6962158 VSAL_II0809 Aliivibrio salmonicida LFI1238 transposase YP_002265115.1 886357 R 316275 CDS YP_002265116.1 209809577 6962159 complement(887405..888517) 1 NC_011313.1 ABC transporter ATP-binding protein 888517 6962159 VSAL_II0810 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002265116.1 887405 R 316275 CDS YP_002265117.1 209809578 6962160 complement(888686..889741) 1 NC_011313.1 Possible alternative translational start site after codon 13; extracellular solute-binding protein 889741 6962160 VSAL_II0811 Aliivibrio salmonicida LFI1238 extracellular solute-binding protein YP_002265117.1 888686 R 316275 CDS YP_002265118.1 209809579 6962161 889912..891042 1 NC_011313.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 891042 6962161 VSAL_II0812 Aliivibrio salmonicida LFI1238 2-aminoethylphosphonate--pyruvate transaminase YP_002265118.1 889912 D 316275 CDS YP_002265119.1 209809580 6962162 891039..892418 1 NC_011313.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 892418 6962162 VSAL_II0813 Aliivibrio salmonicida LFI1238 4-aminobutyrate aminotransferase YP_002265119.1 891039 D 316275 CDS YP_002265120.1 209809581 6962163 892456..893271 1 NC_011313.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 893271 6962163 VSAL_II0814 Aliivibrio salmonicida LFI1238 phosphonoacetaldehyde hydrolase YP_002265120.1 892456 D 316275 CDS YP_002265121.1 209809582 6962164 complement(893345..893587) 1 NC_011313.1 hypothetical protein 893587 6962164 VSAL_II0815 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265121.1 893345 R 316275 CDS YP_002265122.1 209809583 6962165 complement(893856..894215) 1 NC_011313.1 putative glutaredoxin 894215 6962165 VSAL_II0816 Aliivibrio salmonicida LFI1238 putative glutaredoxin YP_002265122.1 893856 R 316275 CDS YP_002265123.1 209809584 6962166 complement(894423..895919) 1 NC_011313.1 proline permease 895919 putP 6962166 putP Aliivibrio salmonicida LFI1238 proline permease YP_002265123.1 894423 R 316275 CDS YP_002265124.1 209809585 6962563 complement(896039..896746) 1 NC_011313.1 hypothetical protein 896746 6962563 VSAL_II0818 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265124.1 896039 R 316275 CDS YP_002265125.1 209809586 6962167 complement(896761..899919) 1 NC_011313.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 899919 putA 6962167 putA Aliivibrio salmonicida LFI1238 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_002265125.1 896761 R 316275 CDS YP_002265126.1 209809587 6962562 complement(900099..900878) 1 NC_011313.1 AraC family transcriptional regulator 900878 6962562 VSAL_II0820 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002265126.1 900099 R 316275 CDS YP_002265127.1 209809588 6962168 901393..903267 1 NC_011313.1 hypothetical protein 903267 6962168 VSAL_II0821 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265127.1 901393 D 316275 CDS YP_002265128.1 209809589 6962169 903548..904039 1 NC_011313.1 hypothetical protein 904039 6962169 VSAL_II0822 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265128.1 903548 D 316275 CDS YP_002265129.1 209809590 6962170 904326..904595 1 NC_011313.1 PTS system lactose/cellobiose specific transporter subunit IIB 904595 6962170 VSAL_II0823 Aliivibrio salmonicida LFI1238 PTS system lactose/cellobiose specific transporter subunit IIB YP_002265129.1 904326 D 316275 CDS YP_002265130.1 209809591 6962171 904607..905863 1 NC_011313.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 905863 ulaA 6962171 ulaA Aliivibrio salmonicida LFI1238 PTS system ascorbate-specific transporter subunit IIC YP_002265130.1 904607 D 316275 CDS YP_002265131.1 209809592 6962172 905860..906309 1 NC_011313.1 Similar to Escherichia coli Mannitol-specific cryptic phosphotransferase enzyme IIA component UniProt:P69824 (147 aa) fasta scores: E()=9.9e-12, 36.913% id in 149 aa; putative phosphotransferase enzyme II, A component 906309 6962172 VSAL_II0825 Aliivibrio salmonicida LFI1238 putative phosphotransferase enzyme II, A component YP_002265131.1 905860 D 316275 CDS YP_002265132.1 209809593 6962173 906482..907273 1 NC_011313.1 membrane protein 907273 6962173 VSAL_II0826 Aliivibrio salmonicida LFI1238 membrane protein YP_002265132.1 906482 D 316275 CDS YP_002265133.1 209809594 6962174 complement(907304..908284) 1 NC_011313.1 membrane protein 908284 6962174 VSAL_II0827 Aliivibrio salmonicida LFI1238 membrane protein YP_002265133.1 907304 R 316275 CDS YP_002265134.1 209809595 6962176 complement(909118..910311) 1 NC_011313.1 transposase 910311 6962176 VSAL_II0829 Aliivibrio salmonicida LFI1238 transposase YP_002265134.1 909118 R 316275 CDS YP_002265135.1 209809596 6962179 912344..912691 1 NC_011313.1 transposase 912691 6962179 VSAL_II0832 Aliivibrio salmonicida LFI1238 transposase YP_002265135.1 912344 D 316275 CDS YP_002265136.1 209809597 6962180 912763..914250 1 NC_011313.1 transposase 914250 6962180 VSAL_II0833 Aliivibrio salmonicida LFI1238 transposase YP_002265136.1 912763 D 316275 CDS YP_002265137.1 209809598 6962427 complement(920490..920867) 1 NC_011313.1 hypothetical protein 920867 6962427 VSAL_II0834 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265137.1 920490 R 316275 CDS YP_002265138.1 209809599 6962182 complement(920870..921763) 1 NC_011313.1 CDS contains a rare Leucine start codon (TTA); LysR family transcriptional regulator 921763 6962182 VSAL_II0835 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002265138.1 920870 R 316275 CDS YP_002265139.1 209809600 6962183 921903..923099 1 NC_011313.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 923099 kbl 6962183 kbl Aliivibrio salmonicida LFI1238 2-amino-3-ketobutyrate coenzyme A ligase YP_002265139.1 921903 D 316275 CDS YP_002265140.1 209809601 6962501 923099..924130 1 NC_011313.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 924130 tdh 6962501 tdh Aliivibrio salmonicida LFI1238 L-threonine 3-dehydrogenase YP_002265140.1 923099 D 316275 CDS YP_002265141.1 209809602 6962601 924320..924682 1 NC_011313.1 hypothetical protein 924682 6962601 VSAL_II0838 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265141.1 924320 D 316275 CDS YP_002265142.1 209809603 6962184 complement(924710..925948) 1 NC_011313.1 hypothetical protein 925948 6962184 VSAL_II0839 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265142.1 924710 R 316275 CDS YP_002265143.1 209809604 6962185 complement(926138..928471) 1 NC_011313.1 Expression may be regulated by Fur; Similar to Vibrio fischeri (strain ATCC 700601/ES114) atp-dependent protease la (ec 3.4.21.53). UniProt:Q5E0G2 (EMBL:CP000021) (776 aa) fasta scores: E()=0, 85.8% id in 776 aa; putative Lon protease 928471 6962185 VSAL_II0840 Aliivibrio salmonicida LFI1238 putative Lon protease YP_002265143.1 926138 R 316275 CDS YP_002265144.1 209809605 6962187 complement(930236..931213) 1 NC_011313.1 putative NADP or NAD utilizing oxidoreductase 931213 6962187 VSAL_II0842 Aliivibrio salmonicida LFI1238 putative NADP or NAD utilizing oxidoreductase YP_002265144.1 930236 R 316275 CDS YP_002265145.1 209809606 6962188 complement(931240..931584) 1 NC_011313.1 hypothetical protein 931584 6962188 VSAL_II0843 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265145.1 931240 R 316275 CDS YP_002265146.1 209809607 6962189 complement(931674..931952) 1 NC_011313.1 hypothetical protein 931952 6962189 VSAL_II0844 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265146.1 931674 R 316275 CDS YP_002265147.1 209809608 6962190 complement(931959..933137) 1 NC_011313.1 MFS transporter 933137 6962190 VSAL_II0845 Aliivibrio salmonicida LFI1238 MFS transporter YP_002265147.1 931959 R 316275 CDS YP_002265148.1 209809609 6962191 933434..933943 1 NC_011313.1 putative acetyltransferase 933943 6962191 VSAL_II0846 Aliivibrio salmonicida LFI1238 putative acetyltransferase YP_002265148.1 933434 D 316275 CDS YP_002265149.1 209809610 6962192 complement(934011..934280) 1 NC_011313.1 hypothetical protein 934280 6962192 VSAL_II0847 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265149.1 934011 R 316275 CDS YP_002265150.1 209809611 6962193 complement(934427..935431) 1 NC_011313.1 hypothetical protein 935431 6962193 VSAL_II0848 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265150.1 934427 R 316275 CDS YP_002265151.1 209809612 6962194 complement(935585..935998) 1 NC_011313.1 hypothetical protein 935998 6962194 VSAL_II0849 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265151.1 935585 R 316275 CDS YP_002265152.1 209809613 6962195 complement(935995..936333) 1 NC_011313.1 hypothetical protein 936333 6962195 VSAL_II0850 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265152.1 935995 R 316275 CDS YP_002265153.1 209809614 6962196 936714..937358 1 NC_011313.1 putative transcriptional regulator 937358 6962196 VSAL_II0851 Aliivibrio salmonicida LFI1238 putative transcriptional regulator YP_002265153.1 936714 D 316275 CDS YP_002265154.1 209809615 6962197 937351..937824 1 NC_011313.1 membrane protein 937824 6962197 VSAL_II0852 Aliivibrio salmonicida LFI1238 membrane protein YP_002265154.1 937351 D 316275 CDS YP_002265155.1 209809616 6962198 complement(937892..938911) 1 NC_011313.1 membrane protein 938911 6962198 VSAL_II0853 Aliivibrio salmonicida LFI1238 membrane protein YP_002265155.1 937892 R 316275 CDS YP_002265156.1 209809617 6962199 complement(938924..939991) 1 NC_011313.1 secretion protein, HlyD family 939991 6962199 VSAL_II0854 Aliivibrio salmonicida LFI1238 secretion protein, HlyD family YP_002265156.1 938924 R 316275 CDS YP_002265157.1 209809618 6962200 940093..940971 1 NC_011313.1 LysR family transcriptional regulator 940971 6962200 VSAL_II0855 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002265157.1 940093 D 316275 CDS YP_002265158.1 209809619 6962201 941131..941367 1 NC_011313.1 hypothetical protein 941367 6962201 VSAL_II0856 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265158.1 941131 D 316275 CDS YP_002265159.1 209809620 6962202 complement(941439..942122) 1 NC_011313.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 942122 bioD 6962202 bioD Aliivibrio salmonicida LFI1238 dithiobiotin synthetase YP_002265159.1 941439 R 316275 CDS YP_002265160.1 209809621 6962438 complement(942115..942942) 1 NC_011313.1 biotin synthesis protein BioC 942942 bioC 6962438 bioC Aliivibrio salmonicida LFI1238 biotin synthesis protein BioC YP_002265160.1 942115 R 316275 CDS YP_002265161.1 209809622 6962437 complement(942950..944101) 1 NC_011313.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 944101 bioF 6962437 bioF Aliivibrio salmonicida LFI1238 8-amino-7-oxononanoate synthase YP_002265161.1 942950 R 316275 CDS YP_002265162.1 209809623 6962439 complement(944085..945137) 1 NC_011313.1 biotin synthase 945137 bioB 6962439 bioB Aliivibrio salmonicida LFI1238 biotin synthase YP_002265162.1 944085 R 316275 CDS YP_002265163.1 209809624 6962436 945244..946524 1 NC_011313.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 946524 bioA 6962436 bioA Aliivibrio salmonicida LFI1238 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_002265163.1 945244 D 316275 CDS YP_002265164.1 209809625 6962435 complement(946596..946802) 1 NC_011313.1 membrane protein 946802 6962435 VSAL_II0862 Aliivibrio salmonicida LFI1238 membrane protein YP_002265164.1 946596 R 316275 CDS YP_002265165.1 209809626 6962203 complement(946934..947500) 1 NC_011313.1 ribosomal-protein-alanine acetyltransferase 947500 rimJ 6962203 rimJ Aliivibrio salmonicida LFI1238 ribosomal-protein-alanine acetyltransferase YP_002265165.1 946934 R 316275 CDS YP_002265166.1 209809627 6962573 complement(947503..949050) 1 NC_011313.1 Similar to Enterobacter agglomerans Transcriptional regulatory protein TyrR UniProt:Q9ZIB7 (521 aa) fasta scores: E()=3.7e-92, 49.516% id in 517 aa; sigma-54 interaction protein 949050 6962573 VSAL_II0864 Aliivibrio salmonicida LFI1238 sigma-54 interaction protein YP_002265166.1 947503 R 316275 CDS YP_002265167.1 209809628 6962204 949199..950143 1 NC_011313.1 hypothetical protein 950143 6962204 VSAL_II0865 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265167.1 949199 D 316275 CDS YP_002265168.1 209809629 6962205 950133..951572 1 NC_011313.1 Similar to Vibrio cholerae Deoxyribodipyrimidine photo-lyase PhrA UniProt:Q9KNA8 (469 aa) fasta scores: E()=1.5e-94, 49.364% id in 472 aa; deoxyribodipyrimidine photo-lyase 951572 phrA 6962205 phrA Aliivibrio salmonicida LFI1238 deoxyribodipyrimidine photo-lyase YP_002265168.1 950133 D 316275 CDS YP_002265169.1 209809630 6962551 951624..953492 1 NC_011313.1 hypothetical protein 953492 6962551 VSAL_II0867 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265169.1 951624 D 316275 CDS YP_002265170.1 209809631 6962206 953830..954768 1 NC_011313.1 Expression may be regulated by Fur; putative lipoprotein 954768 6962206 VSAL_II0868 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002265170.1 953830 D 316275 CDS YP_002265171.1 209809632 6962207 complement(954818..955321) 1 NC_011313.1 hypothetical protein 955321 6962207 VSAL_II0869 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265171.1 954818 R 316275 CDS YP_002265172.1 209809633 6962208 complement(955318..955800) 1 NC_011313.1 hypothetical protein 955800 6962208 VSAL_II0870 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265172.1 955318 R 316275 CDS YP_002265173.1 209809634 6962209 complement(955808..956341) 1 NC_011313.1 membrane protein 956341 6962209 VSAL_II0871 Aliivibrio salmonicida LFI1238 membrane protein YP_002265173.1 955808 R 316275 CDS YP_002265174.1 209809635 6962211 complement(957677..958408) 1 NC_011313.1 hypothetical protein 958408 6962211 VSAL_II0873 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265174.1 957677 R 316275 CDS YP_002265175.1 209809636 6962213 959426..960619 1 NC_011313.1 transposase 960619 6962213 VSAL_II0875 Aliivibrio salmonicida LFI1238 transposase YP_002265175.1 959426 D 316275 CDS YP_002265176.1 209809637 6962214 960911..962398 1 NC_011313.1 transposase 962398 6962214 VSAL_II0876 Aliivibrio salmonicida LFI1238 transposase YP_002265176.1 960911 D 316275 CDS YP_002265177.1 209809638 6962216 963451..963768 1 NC_011313.1 putative cytochrome c-554 963768 6962216 VSAL_II0878 Aliivibrio salmonicida LFI1238 putative cytochrome c-554 YP_002265177.1 963451 D 316275 CDS YP_002265178.1 209809639 6962217 complement(963735..964898) 1 NC_011313.1 NifS-related protein aminotransferase 964898 6962217 VSAL_II0879 Aliivibrio salmonicida LFI1238 NifS-related protein aminotransferase YP_002265178.1 963735 R 316275 CDS YP_002265179.1 209809640 6962218 complement(964951..965607) 1 NC_011313.1 Similar to Serratia liquefaciens BsmA UniProt:Q71BC1 (214 aa) fasta scores: E()=3.4e-46, 59.048% id in 210 aa; cell aggregate formation protein, biofilm development BsmA 965607 bsmA 6962218 bsmA Aliivibrio salmonicida LFI1238 cell aggregate formation protein, biofilm development BsmA YP_002265179.1 964951 R 316275 CDS YP_002265180.1 209809641 6962440 complement(965846..967030) 1 NC_011313.1 Similar to Escherichia coli Multidrug resistance protein D EmrD UniProt:P31442 (394 aa) fasta scores: E()=3.4e-24, 30.709% id in 381 aa; drug resistance translocator protein 967030 6962440 VSAL_II0881 Aliivibrio salmonicida LFI1238 drug resistance translocator protein YP_002265180.1 965846 R 316275 CDS YP_002265181.1 209809642 6962219 967109..967981 1 NC_011313.1 Similar to Escherichia coli HTH-type transcriptional activator AaeR UniProt:P67662 (309 aa) fasta scores: E()=1.9e-22, 34.899% id in 298 aa; LysR family transcriptional regulator 967981 6962219 VSAL_II0882 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002265181.1 967109 D 316275 CDS YP_002265182.1 209809643 6962220 968097..968717 1 NC_011313.1 amino acid transport protein, LysE type 968717 6962220 VSAL_II0883 Aliivibrio salmonicida LFI1238 amino acid transport protein, LysE type YP_002265182.1 968097 D 316275 CDS YP_002265183.1 209809644 6962221 968890..969447 1 NC_011313.1 glutaredoxin 969447 6962221 VSAL_II0884 Aliivibrio salmonicida LFI1238 glutaredoxin YP_002265183.1 968890 D 316275 CDS YP_002265184.1 209809645 6962222 969713..971851 1 NC_011313.1 membrane associated GGDEF protein 971851 6962222 VSAL_II0885 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002265184.1 969713 D 316275 CDS YP_002265185.1 209809646 6962223 complement(971854..972033) 1 NC_011313.1 hypothetical protein 972033 6962223 VSAL_II0886 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265185.1 971854 R 316275 CDS YP_002265186.1 209809647 6962224 972176..972919 1 NC_011313.1 putative hydrolase 972919 6962224 VSAL_II0887 Aliivibrio salmonicida LFI1238 putative hydrolase YP_002265186.1 972176 D 316275 CDS YP_002265187.1 209809648 6962225 complement(973015..973890) 1 NC_011313.1 membrane protein 973890 6962225 VSAL_II0888 Aliivibrio salmonicida LFI1238 membrane protein YP_002265187.1 973015 R 316275 CDS YP_002265188.1 209809649 6962226 complement(973944..974546) 1 NC_011313.1 hypothetical protein 974546 6962226 VSAL_II0889 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265188.1 973944 R 316275 CDS YP_002265189.1 209809650 6962227 974815..975030 1 NC_011313.1 hypothetical protein 975030 6962227 VSAL_II0890 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265189.1 974815 D 316275 CDS YP_002265190.1 209809651 6962228 975030..975254 1 NC_011313.1 hypothetical protein 975254 6962228 VSAL_II0891 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265190.1 975030 D 316275 CDS YP_002265191.1 209809652 6962229 975254..975652 1 NC_011313.1 hypothetical protein 975652 6962229 VSAL_II0892 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265191.1 975254 D 316275 CDS YP_002265192.1 209809653 6962230 complement(975667..976521) 1 NC_011313.1 putative HTH-type regulatory protein, AraC family 976521 6962230 VSAL_II0893 Aliivibrio salmonicida LFI1238 putative HTH-type regulatory protein, AraC family YP_002265192.1 975667 R 316275 CDS YP_002265193.1 209809654 6962231 976824..978725 1 NC_011313.1 Similar to Xanthomonas campestris pv. campestris PTS system fructose-specific EIIBC component FruA UniProt:P23355 (580 aa) fasta scores: E()=6.5e-53, 41.807% id in 476 aa; PTS system transporter subunit IIBC 978725 6962231 VSAL_II0894 Aliivibrio salmonicida LFI1238 PTS system transporter subunit IIBC YP_002265193.1 976824 D 316275 CDS YP_002265194.1 209809655 6962232 978784..980001 1 NC_011313.1 mannose-6-phosphate isomerase 980001 manA 6962232 manA Aliivibrio salmonicida LFI1238 mannose-6-phosphate isomerase YP_002265194.1 978784 D 316275 CDS YP_002265195.1 209809656 6962528 complement(980066..980857) 1 NC_011313.1 hypothetical protein 980857 6962528 VSAL_II0896 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265195.1 980066 R 316275 CDS YP_002265196.1 209809657 6962233 complement(980854..981198) 1 NC_011313.1 Similar to Escherichia coli Fructose-like phosphotransferase enzyme IIB component 2 FrwB UniProt:P69816 (106 aa) fasta scores: E()=8.7e-11, 46.316% id in 95 aa; PTS system transporter subunit IIB 981198 6962233 VSAL_II0897 Aliivibrio salmonicida LFI1238 PTS system transporter subunit IIB YP_002265196.1 980854 R 316275 CDS YP_002265197.1 209809658 6962236 983459..984652 1 NC_011313.1 transposase 984652 6962236 VSAL_II0900 Aliivibrio salmonicida LFI1238 transposase YP_002265197.1 983459 D 316275 CDS YP_002265198.1 209809659 6962237 complement(985955..986578) 1 NC_011313.1 TonB3 protein 986578 tonB3 6962237 tonB3 Aliivibrio salmonicida LFI1238 TonB3 protein YP_002265198.1 985955 R 316275 CDS YP_002265199.1 209809660 6962609 complement(986578..986982) 1 NC_011313.1 TonB system transport protein ExbD3 986982 exbD3 6962609 exbD3 Aliivibrio salmonicida LFI1238 TonB system transport protein ExbD3 YP_002265199.1 986578 R 316275 CDS YP_002265200.1 209809661 6962460 complement(986979..987512) 1 NC_011313.1 TonB system transport protein ExbB3 987512 exbB3 6962460 exbB3 Aliivibrio salmonicida LFI1238 TonB system transport protein ExbB3 YP_002265200.1 986979 R 316275 CDS YP_002265201.1 209809662 6962458 complement(987512..988873) 1 NC_011313.1 Biopolymer transport protein TolR 988873 tolR3 6962458 tolR3 Aliivibrio salmonicida LFI1238 Biopolymer transport protein TolR YP_002265201.1 987512 R 316275 CDS YP_002265202.1 209809663 6962607 complement(988875..989642) 1 NC_011313.1 hypothetical protein 989642 6962607 VSAL_II0905 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265202.1 988875 R 316275 CDS YP_002265203.1 209809664 6962238 complement(989719..991734) 1 NC_011313.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 991734 hatB 6962238 hatB Aliivibrio salmonicida LFI1238 iron-hydroxamate transporter permease subunit YP_002265203.1 989719 R 316275 CDS YP_002265204.1 209809665 6962239 complement(992664..993431) 1 NC_011313.1 iron(III) ABC transporter ATP-binding protein 993431 hatC 6962239 hatC Aliivibrio salmonicida LFI1238 iron(III) ABC transporter ATP-binding protein YP_002265204.1 992664 R 316275 CDS YP_002265205.1 209809666 6962486 complement(993561..995711) 1 NC_011313.1 Expression may be regulated by Fur; ferrioxamine B receptor 995711 desA 6962486 desA Aliivibrio salmonicida LFI1238 ferrioxamine B receptor YP_002265205.1 993561 R 316275 CDS YP_002265206.1 209809667 6962455 complement(995856..996752) 1 NC_011313.1 AraC family transcriptional regulator 996752 6962455 VSAL_II0910 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002265206.1 995856 R 316275 CDS YP_002265207.1 209809668 6962240 complement(996958..998529) 1 NC_011313.1 ABC transporter ATP-binding protein 998529 6962240 VSAL_II0911 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002265207.1 996958 R 316275 CDS YP_002265208.1 209809669 6962241 complement(998797..999330) 1 NC_011313.1 hypothetical protein 999330 6962241 VSAL_II0912 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265208.1 998797 R 316275 CDS YP_002265209.1 209809670 6962242 complement(999320..1000417) 1 NC_011313.1 N-ethylmaleimide reductase 1000417 nemA 6962242 nemA Aliivibrio salmonicida LFI1238 N-ethylmaleimide reductase YP_002265209.1 999320 R 316275 CDS YP_002265210.1 209809671 6962543 complement(1000496..1001683) 1 NC_011313.1 MFS transporter 1001683 6962543 VSAL_II0914 Aliivibrio salmonicida LFI1238 MFS transporter YP_002265210.1 1000496 R 316275 CDS YP_002265211.1 209809672 6962243 1001920..1002855 1 NC_011313.1 LysR family transcriptional regulator 1002855 6962243 VSAL_II0915 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002265211.1 1001920 D 316275 CDS YP_002265212.1 209809673 6962244 complement(1003077..1003808) 1 NC_011313.1 membrane protein 1003808 6962244 VSAL_II0916 Aliivibrio salmonicida LFI1238 membrane protein YP_002265212.1 1003077 R 316275 CDS YP_002265213.1 209809674 6962245 complement(1003831..1004397) 1 NC_011313.1 transposase 1004397 6962245 VSAL_II0917 Aliivibrio salmonicida LFI1238 transposase YP_002265213.1 1003831 R 316275 CDS YP_002265214.1 209809675 6962246 complement(1004415..1004837) 1 NC_011313.1 transposase 1004837 6962246 VSAL_II0918 Aliivibrio salmonicida LFI1238 transposase YP_002265214.1 1004415 R 316275 CDS YP_002265215.1 209809676 6962521 1005562..1006452 1 NC_011313.1 with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 1006452 malG 6962521 malG Aliivibrio salmonicida LFI1238 maltose transporter permease YP_002265215.1 1005562 D 316275 CDS YP_002265216.1 209809677 6962523 complement(1006668..1007636) 1 NC_011313.1 putative GGDEF protein 1007636 6962523 VSAL_II0921 Aliivibrio salmonicida LFI1238 putative GGDEF protein YP_002265216.1 1006668 R 316275 CDS YP_002265217.1 209809678 6962248 complement(1007633..1008616) 1 NC_011313.1 Expression may be regulated by Fur; response regulator protein 1008616 6962248 VSAL_II0922 Aliivibrio salmonicida LFI1238 response regulator protein YP_002265217.1 1007633 R 316275 CDS YP_002265218.1 209809679 6962249 1008856..1010121 1 NC_011313.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1010121 ackA 6962249 ackA Aliivibrio salmonicida LFI1238 acetate kinase YP_002265218.1 1008856 D 316275 CDS YP_002265219.1 209809680 6962250 1013852..1014274 1 NC_011313.1 transposase 1014274 6962250 VSAL_II0925 Aliivibrio salmonicida LFI1238 transposase YP_002265219.1 1013852 D 316275 CDS YP_002265220.1 209809681 6962251 1014292..1014858 1 NC_011313.1 transposase 1014858 6962251 VSAL_II0926 Aliivibrio salmonicida LFI1238 transposase YP_002265220.1 1014292 D 316275 CDS YP_002265221.1 209809682 6962522 complement(1015834..1017321) 1 NC_011313.1 transposase 1017321 6962522 VSAL_II0928 Aliivibrio salmonicida LFI1238 transposase YP_002265221.1 1015834 R 316275 CDS YP_002265222.1 209809683 6962253 complement(1017393..1017740) 1 NC_011313.1 transposase 1017740 6962253 VSAL_II0929 Aliivibrio salmonicida LFI1238 transposase YP_002265222.1 1017393 R 316275 CDS YP_002265223.1 209809684 6962254 complement(1017737..1018051) 1 NC_011313.1 transposase 1018051 6962254 VSAL_II0930 Aliivibrio salmonicida LFI1238 transposase YP_002265223.1 1017737 R 316275 CDS YP_002265224.1 209809685 6962256 complement(1018599..1021217) 1 NC_011313.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 1021217 bcsA 6962256 bcsA Aliivibrio salmonicida LFI1238 cellulose synthase catalytic subunit YP_002265224.1 1018599 R 316275 CDS YP_002265225.1 209809686 6962434 complement(1021222..1021992) 1 NC_011313.1 hypothetical protein 1021992 6962434 VSAL_II0933 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265225.1 1021222 R 316275 CDS YP_002265226.1 209809687 6962257 complement(1021992..1022228) 1 NC_011313.1 hypothetical protein 1022228 6962257 VSAL_II0934 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265226.1 1021992 R 316275 CDS YP_002265227.1 209809688 6962258 1022509..1024056 1 NC_011313.1 hypothetical protein 1024056 6962258 VSAL_II0935 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265227.1 1022509 D 316275 CDS YP_002265228.1 209809689 6962259 1024061..1024237 1 NC_011313.1 membrane protein 1024237 6962259 VSAL_II0936 Aliivibrio salmonicida LFI1238 membrane protein YP_002265228.1 1024061 D 316275 CDS YP_002265229.1 209809690 6962260 1024234..1025859 1 NC_011313.1 membrane protein 1025859 6962260 VSAL_II0937 Aliivibrio salmonicida LFI1238 membrane protein YP_002265229.1 1024234 D 316275 CDS YP_002265230.1 209809691 6962261 complement(1025940..1026410) 1 NC_011313.1 hypothetical protein 1026410 6962261 VSAL_II0938 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265230.1 1025940 R 316275 CDS YP_002265231.1 209809692 6962262 1026685..1026975 1 NC_011313.1 hypothetical protein 1026975 6962262 VSAL_II0939 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265231.1 1026685 D 316275 CDS YP_002265232.1 209809693 6962263 1027211..1028221 1 NC_011313.1 AraC family transcriptional regulator 1028221 6962263 VSAL_II0940 Aliivibrio salmonicida LFI1238 AraC family transcriptional regulator YP_002265232.1 1027211 D 316275 CDS YP_002265233.1 209809694 6962264 1028352..1028705 1 NC_011313.1 hypothetical protein 1028705 6962264 VSAL_II0941 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265233.1 1028352 D 316275 CDS YP_002265234.1 209809695 6962265 1028698..1029921 1 NC_011313.1 putative secretion protein, HlyD family 1029921 6962265 VSAL_II0942 Aliivibrio salmonicida LFI1238 putative secretion protein, HlyD family YP_002265234.1 1028698 D 316275 CDS YP_002265235.1 209809696 6962515 complement(1033094..1033891) 1 NC_011313.1 hypothetical protein 1033891 6962515 VSAL_II0944 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265235.1 1033094 R 316275 CDS YP_002265236.1 209809697 6962268 1035539..1036426 1 NC_011313.1 integral membrane protein 1036426 6962268 VSAL_II0946 Aliivibrio salmonicida LFI1238 integral membrane protein YP_002265236.1 1035539 D 316275 CDS YP_002265237.1 209809698 6962269 complement(1036419..1036727) 1 NC_011313.1 No significant database matches. Expression may be stress-induced; hypothetical protein 1036727 6962269 VSAL_II0947 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265237.1 1036419 R 316275 CDS YP_002265238.1 209809699 6962270 1036919..1037629 1 NC_011313.1 ABC transporter ATP-binding protein 1037629 6962270 VSAL_II0948 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002265238.1 1036919 D 316275 CDS YP_002265239.1 209809700 6962271 1037629..1038501 1 NC_011313.1 membrane protein 1038501 6962271 VSAL_II0949 Aliivibrio salmonicida LFI1238 membrane protein YP_002265239.1 1037629 D 316275 CDS YP_002265240.1 209809701 6962272 complement(1038577..1040007) 1 NC_011313.1 putative membrane associated signaling protein 1040007 6962272 VSAL_II0950 Aliivibrio salmonicida LFI1238 putative membrane associated signaling protein YP_002265240.1 1038577 R 316275 CDS YP_002265241.1 209809702 6962273 complement(1040008..1041324) 1 NC_011313.1 membrane associated GGDEF protein 1041324 6962273 VSAL_II0951 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002265241.1 1040008 R 316275 CDS YP_002265242.1 209809703 6962274 complement(1041346..1042596) 1 NC_011313.1 membrane associated GGDEF protein 1042596 6962274 VSAL_II0952 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002265242.1 1041346 R 316275 CDS YP_002265243.1 209809704 6962275 complement(1042850..1044130) 1 NC_011313.1 membrane protein 1044130 6962275 VSAL_II0953 Aliivibrio salmonicida LFI1238 membrane protein YP_002265243.1 1042850 R 316275 CDS YP_002265244.1 209809705 6962276 complement(1044323..1044874) 1 NC_011313.1 maltose O-acetyltransferase 1044874 maa 6962276 maa Aliivibrio salmonicida LFI1238 maltose O-acetyltransferase YP_002265244.1 1044323 R 316275 CDS YP_002265245.1 209809706 6962277 1046582..1047025 1 NC_011313.1 putative cytidine and deoxycytidylate deaminase 1047025 6962277 VSAL_II0956 Aliivibrio salmonicida LFI1238 putative cytidine and deoxycytidylate deaminase YP_002265245.1 1046582 D 316275 CDS YP_002265246.1 209809707 6962278 complement(1047262..1047843) 1 NC_011313.1 autoinducer synthesis protein LuxI 1047843 luxI 6962278 luxI Aliivibrio salmonicida LFI1238 autoinducer synthesis protein LuxI YP_002265246.1 1047262 R 316275 CDS YP_002265247.1 209809708 6962514 1048076..1048819 1 NC_011313.1 transcriptional activator protein LuxR 1048819 luxR 6962514 luxR Aliivibrio salmonicida LFI1238 transcriptional activator protein LuxR YP_002265247.1 1048076 D 316275 CDS YP_002265248.1 209809709 6962517 complement(1048883..1049590) 1 NC_011313.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 1049590 fre 6962517 fre Aliivibrio salmonicida LFI1238 FMN reductase YP_002265248.1 1048883 R 316275 CDS YP_002265249.1 209809710 6962513 complement(1049612..1050733) 1 NC_011313.1 long-chain-fatty-acid ligase LuxE 1050733 6962513 VSAL_II0960 Aliivibrio salmonicida LFI1238 long-chain-fatty-acid ligase LuxE YP_002265249.1 1049612 R 316275 CDS YP_002265250.1 209809711 6962279 complement(1050812..1051792) 1 NC_011313.1 alkanal monooxygenase subunit beta 1051792 luxB 6962279 luxB Aliivibrio salmonicida LFI1238 alkanal monooxygenase subunit beta YP_002265250.1 1050812 R 316275 CDS YP_002265251.1 209809712 6962510 complement(1051831..1052895) 1 NC_011313.1 alkanal monooxygenase subunit alpha 1052895 luxA 6962510 luxA Aliivibrio salmonicida LFI1238 alkanal monooxygenase subunit alpha YP_002265251.1 1051831 R 316275 CDS YP_002265252.1 209809713 6962509 complement(1052942..1053829) 1 NC_011313.1 part of the fatty acid reductase system required for aldehyde biosynthesis; produces fatty acids for the luminescent reaction; acyl transferase 1053829 luxD 6962509 luxD Aliivibrio salmonicida LFI1238 acyl transferase YP_002265252.1 1052942 R 316275 CDS YP_002265253.1 209809714 6962512 complement(1053865..1055295) 1 NC_011313.1 acyl-CoA reductase LuxC 1055295 luxC 6962512 luxC Aliivibrio salmonicida LFI1238 acyl-CoA reductase LuxC YP_002265253.1 1053865 R 316275 CDS YP_002265254.1 209809715 6962511 1055927..1056673 1 NC_011313.1 transcriptional activator protein LuxR 1056673 luxR 6962511 luxR Aliivibrio salmonicida LFI1238 transcriptional activator protein LuxR YP_002265254.1 1055927 D 316275 CDS YP_002265255.1 209809716 6962518 complement(1056777..1057577) 1 NC_011313.1 mechanosensitive ion channel 1057577 6962518 VSAL_II0966 Aliivibrio salmonicida LFI1238 mechanosensitive ion channel YP_002265255.1 1056777 R 316275 CDS YP_002265256.1 209809717 6962280 complement(1057788..1057970) 1 NC_011313.1 membrane protein 1057970 6962280 VSAL_II0967 Aliivibrio salmonicida LFI1238 membrane protein YP_002265256.1 1057788 R 316275 CDS YP_002265257.1 209809718 6962281 1058433..1058957 1 NC_011313.1 hypothetical protein 1058957 6962281 VSAL_II0968 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265257.1 1058433 D 316275 CDS YP_002265258.1 209809719 6962282 1059098..1060063 1 NC_011313.1 hypothetical protein 1060063 6962282 VSAL_II0969 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265258.1 1059098 D 316275 CDS YP_002265259.1 209809720 6962283 1060538..1061728 1 NC_011313.1 transposase 1061728 6962283 VSAL_II0970 Aliivibrio salmonicida LFI1238 transposase YP_002265259.1 1060538 D 316275 CDS YP_002265260.1 209809721 6962286 complement(1065188..1066675) 1 NC_011313.1 transposase 1066675 6962286 VSAL_II0973 Aliivibrio salmonicida LFI1238 transposase YP_002265260.1 1065188 R 316275 CDS YP_002265261.1 209809722 6962287 complement(1066747..1067094) 1 NC_011313.1 transposase 1067094 6962287 VSAL_II0974 Aliivibrio salmonicida LFI1238 transposase YP_002265261.1 1066747 R 316275 CDS YP_002265262.1 209809723 6962288 complement(1067091..1067405) 1 NC_011313.1 transposase 1067405 6962288 VSAL_II0975 Aliivibrio salmonicida LFI1238 transposase YP_002265262.1 1067091 R 316275 CDS YP_002265263.1 209809724 6962290 complement(1068013..1068870) 1 NC_011313.1 hypothetical protein 1068870 6962290 VSAL_II0977 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265263.1 1068013 R 316275 CDS YP_002265264.1 209809725 6962291 1069349..1070086 1 NC_011313.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 1070086 pepE 6962291 pepE Aliivibrio salmonicida LFI1238 peptidase E YP_002265264.1 1069349 D 316275 CDS YP_002265265.1 209809726 6962548 complement(1070186..1071073) 1 NC_011313.1 LysR family transcriptional regulator 1071073 6962548 VSAL_II0979 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002265265.1 1070186 R 316275 CDS YP_002265266.1 209809727 6962292 1071202..1071921 1 NC_011313.1 putative exported oxidoreductase 1071921 6962292 VSAL_II0980 Aliivibrio salmonicida LFI1238 putative exported oxidoreductase YP_002265266.1 1071202 D 316275 CDS YP_002265267.1 209809728 6962293 complement(1071973..1073079) 1 NC_011313.1 putative flavin containing amine oxidoreductase 1073079 6962293 VSAL_II0981 Aliivibrio salmonicida LFI1238 putative flavin containing amine oxidoreductase YP_002265267.1 1071973 R 316275 CDS YP_002265268.1 209809729 6962294 complement(1073092..1073763) 1 NC_011313.1 hypothetical protein 1073763 6962294 VSAL_II0982 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265268.1 1073092 R 316275 CDS YP_002265269.1 209809730 6962295 1073892..1074794 1 NC_011313.1 LysR family transcriptional regulator 1074794 6962295 VSAL_II0983 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002265269.1 1073892 D 316275 CDS YP_002265270.1 209809731 6962296 1075047..1076009 1 NC_011313.1 Expression may be regulated by Fur; hypothetical protein 1076009 6962296 VSAL_II0984 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265270.1 1075047 D 316275 CDS YP_002265271.1 209809732 6962297 complement(1076165..1077121) 1 NC_011313.1 membrane transport protein auxin efflux carrier 1077121 6962297 VSAL_II0985 Aliivibrio salmonicida LFI1238 membrane transport protein auxin efflux carrier YP_002265271.1 1076165 R 316275 CDS YP_002265272.1 209809733 6962298 1078170..1080347 1 NC_011313.1 hypothetical protein 1080347 6962298 VSAL_II0986 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265272.1 1078170 D 316275 CDS YP_002265273.1 209809734 6962299 1080433..1081953 1 NC_011313.1 hypothetical protein 1081953 6962299 VSAL_II0987 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265273.1 1080433 D 316275 CDS YP_002265274.1 209809735 6962300 1082009..1082686 1 NC_011313.1 hypothetical protein 1082686 6962300 VSAL_II0988 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265274.1 1082009 D 316275 CDS YP_002265275.1 209809736 6962302 1083820..1085013 1 NC_011313.1 transposase 1085013 6962302 VSAL_II0990 Aliivibrio salmonicida LFI1238 transposase YP_002265275.1 1083820 D 316275 CDS YP_002265276.1 209809737 6962303 1085305..1086792 1 NC_011313.1 transposase 1086792 6962303 VSAL_II0991 Aliivibrio salmonicida LFI1238 transposase YP_002265276.1 1085305 D 316275 CDS YP_002265277.1 209809738 6962305 complement(1087960..1088307) 1 NC_011313.1 transposase 1088307 6962305 VSAL_II0993 Aliivibrio salmonicida LFI1238 transposase YP_002265277.1 1087960 R 316275 CDS YP_002265278.1 209809739 6962306 complement(1088304..1088618) 1 NC_011313.1 transposase 1088618 6962306 VSAL_II0994 Aliivibrio salmonicida LFI1238 transposase YP_002265278.1 1088304 R 316275 CDS YP_002265279.1 209809740 6962307 complement(1088783..1090186) 1 NC_011313.1 PTS system, fructose-like permease IIC component 1090186 6962307 VSAL_II0995 Aliivibrio salmonicida LFI1238 PTS system, fructose-like permease IIC component YP_002265279.1 1088783 R 316275 CDS YP_002265280.1 209809741 6962308 complement(1090210..1090641) 1 NC_011313.1 Similar to Bacillus subtilis Phosphotransferase system (PTS) fructose-specific enzyme IIAB component FruA UniProt:P71012 (635 aa) fasta scores: E()=6.7e-11, 37.500% id in 144 aa; PTS system, permease-specific phosphorylation site EIIA component 1090641 6962308 VSAL_II0996 Aliivibrio salmonicida LFI1238 PTS system, permease-specific phosphorylation site EIIA component YP_002265280.1 1090210 R 316275 CDS YP_002265281.1 209809742 6962309 complement(1091151..1092890) 1 NC_011313.1 Possible alternative translational start site after codon 12; membrane associated GGDEF protein 1092890 6962309 VSAL_II0997 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002265281.1 1091151 R 316275 CDS YP_002265282.1 209809743 6962310 complement(1093126..1094028) 1 NC_011313.1 hypothetical protein 1094028 6962310 VSAL_II0998 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265282.1 1093126 R 316275 CDS YP_002265283.1 209809744 6962311 complement(1094104..1095420) 1 NC_011313.1 branched-chain amino acid transport system II carrier protein 1095420 6962311 VSAL_II0999 Aliivibrio salmonicida LFI1238 branched-chain amino acid transport system II carrier protein YP_002265283.1 1094104 R 316275 CDS YP_002265284.1 209809745 6962313 1098380..1098850 1 NC_011313.1 putative lipoprotein 1098850 6962313 VSAL_II1001 Aliivibrio salmonicida LFI1238 putative lipoprotein YP_002265284.1 1098380 D 316275 CDS YP_002265285.1 209809746 6962314 complement(1098951..1100453) 1 NC_011313.1 Similar to Bacillus ps3 Sodium/proton-dependent alanine carrier protein Acp UniProt:P30145 (445 aa) fasta scores: E()=1.6e-52, 50.759% id in 461 aa; sodium/proton-dependent alanine carrier protein 1100453 6962314 VSAL_II1002 Aliivibrio salmonicida LFI1238 sodium/proton-dependent alanine carrier protein YP_002265285.1 1098951 R 316275 CDS YP_002265286.1 209809747 6962315 complement(1100751..1101083) 1 NC_011313.1 hypothetical protein 1101083 6962315 VSAL_II1003 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265286.1 1100751 R 316275 CDS YP_002265287.1 209809748 6962318 1102436..1102783 1 NC_011313.1 transposase 1102783 6962318 VSAL_II1006 Aliivibrio salmonicida LFI1238 transposase YP_002265287.1 1102436 D 316275 CDS YP_002265288.1 209809749 6962319 1102855..1104342 1 NC_011313.1 transposase 1104342 6962319 VSAL_II1007 Aliivibrio salmonicida LFI1238 transposase YP_002265288.1 1102855 D 316275 CDS YP_002265289.1 209809750 6962321 1106799..1107146 1 NC_011313.1 Expression may be stress-induced; hypothetical protein 1107146 6962321 VSAL_II1009 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265289.1 1106799 D 316275 CDS YP_002265290.1 209809751 6962322 1107154..1107726 1 NC_011313.1 hypothetical protein 1107726 6962322 VSAL_II1010 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265290.1 1107154 D 316275 CDS YP_002265291.1 209809752 6962323 1107989..1109461 1 NC_011313.1 Similar to Salmonella choleraesuis Putative POT family, peptide transport protein YdgR UniProt:Q57PI5 (501 aa) fasta scores: E()=1.2e-18, 20.896% id in 469 aa; peptide transporter 1109461 6962323 VSAL_II1011 Aliivibrio salmonicida LFI1238 peptide transporter YP_002265291.1 1107989 D 316275 CDS YP_002265292.1 209809753 6962324 complement(1109534..1111270) 1 NC_011313.1 response regulator, histidine kinase 1111270 6962324 VSAL_II1012 Aliivibrio salmonicida LFI1238 response regulator, histidine kinase YP_002265292.1 1109534 R 316275 CDS YP_002265293.1 209809754 6962325 complement(1111287..1111820) 1 NC_011313.1 putative heme binding protein 1111820 6962325 VSAL_II1013 Aliivibrio salmonicida LFI1238 putative heme binding protein YP_002265293.1 1111287 R 316275 CDS YP_002265294.1 209809755 6962326 1112027..1112563 1 NC_011313.1 hypothetical protein 1112563 6962326 VSAL_II1014 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265294.1 1112027 D 316275 CDS YP_002265295.1 209809756 6962328 1113734..1114048 1 NC_011313.1 transposase 1114048 6962328 VSAL_II1016 Aliivibrio salmonicida LFI1238 transposase YP_002265295.1 1113734 D 316275 CDS YP_002265296.1 209809757 6962329 1114045..1114392 1 NC_011313.1 transposase 1114392 6962329 VSAL_II1017 Aliivibrio salmonicida LFI1238 transposase YP_002265296.1 1114045 D 316275 CDS YP_002265297.1 209809758 6962330 1114464..1115951 1 NC_011313.1 transposase 1115951 6962330 VSAL_II1018 Aliivibrio salmonicida LFI1238 transposase YP_002265297.1 1114464 D 316275 CDS YP_002265298.1 209809759 6962331 complement(1116160..1116774) 1 NC_011313.1 hypothetical protein 1116774 6962331 VSAL_II1019 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265298.1 1116160 R 316275 CDS YP_002265299.1 209809760 6962332 complement(1116879..1117946) 1 NC_011313.1 membrane protein 1117946 6962332 VSAL_II1020 Aliivibrio salmonicida LFI1238 membrane protein YP_002265299.1 1116879 R 316275 CDS YP_002265300.1 209809761 6962333 complement(1118089..1118922) 1 NC_011313.1 Similar to Escherichia coli Inner membrane protein YddG UniProt:P46136 (274 aa) fasta scores: E()=2.9e-47,48.897% id in 272 aa; hypothetical protein 1118922 6962333 VSAL_II1021 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265300.1 1118089 R 316275 CDS YP_002265301.1 209809762 6962334 1119247..1121133 1 NC_011313.1 Expression may be regulated by Fur; methyl-accepting chemotaxis protein 1121133 6962334 VSAL_II1022 Aliivibrio salmonicida LFI1238 methyl-accepting chemotaxis protein YP_002265301.1 1119247 D 316275 CDS YP_002265302.1 209809763 6962335 complement(1121163..1121333) 1 NC_011313.1 hypothetical protein 1121333 6962335 VSAL_II1023 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265302.1 1121163 R 316275 CDS YP_002265303.1 209809764 6962336 complement(1121857..1123179) 1 NC_011313.1 Similar to Bacillus subtilis Probable 6-phospho-beta-glucosidase LicH UniProt:P46320 (442 aa) fasta scores: E()=1.1e-82, 48.526% id in 441 aa; putative 6-phospho-beta-glucosidase 1123179 6962336 VSAL_II1024 Aliivibrio salmonicida LFI1238 putative 6-phospho-beta-glucosidase YP_002265303.1 1121857 R 316275 CDS YP_002265304.1 209809765 6962337 1123301..1124218 1 NC_011313.1 Similar to Escherichia coli HTH-type transcriptional regulator DsdC UniProt:P46068 (311 aa) fasta scores: E()=5.7e-32, 36.877% id in 301 aa; LysR family transcriptional regulator 1124218 6962337 VSAL_II1025 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002265304.1 1123301 D 316275 CDS YP_002265305.1 209809766 6962338 complement(1124238..1125275) 1 NC_011313.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 1125275 6962338 VSAL_II1026 Aliivibrio salmonicida LFI1238 tryptophanyl-tRNA synthetase II YP_002265305.1 1124238 R 316275 CDS YP_002265306.1 209809767 6962339 1125648..1126715 1 NC_011313.1 hypothetical protein 1126715 6962339 VSAL_II1027 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265306.1 1125648 D 316275 CDS YP_002265307.1 209809768 6962340 1126724..1127530 1 NC_011313.1 hypothetical protein 1127530 6962340 VSAL_II1028 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265307.1 1126724 D 316275 CDS YP_002265308.1 209809769 6962341 1127527..1128414 1 NC_011313.1 binding-protein-dependent transport system,inner membrane component 1128414 6962341 VSAL_II1029 Aliivibrio salmonicida LFI1238 binding-protein-dependent transport system,inner membrane component YP_002265308.1 1127527 D 316275 CDS YP_002265309.1 209809770 6962342 1128401..1129189 1 NC_011313.1 binding-protein-dependent transport system,inner membrane component 1129189 6962342 VSAL_II1030 Aliivibrio salmonicida LFI1238 binding-protein-dependent transport system,inner membrane component YP_002265309.1 1128401 D 316275 CDS YP_002265310.1 209809771 6962343 1129186..1130205 1 NC_011313.1 ABC transporter ATP-binding protein 1130205 6962343 VSAL_II1031 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002265310.1 1129186 D 316275 CDS YP_002265311.1 209809772 6962344 1130207..1130872 1 NC_011313.1 hypothetical protein 1130872 6962344 VSAL_II1032 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265311.1 1130207 D 316275 CDS YP_002265312.1 209809773 6962345 complement(1130903..1131112) 1 NC_011313.1 hypothetical protein 1131112 6962345 VSAL_II1033 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265312.1 1130903 R 316275 CDS YP_002265313.1 209809774 6962346 complement(1131404..1131613) 1 NC_011313.1 Expression may be regulated by Fur; cold shock-like protein CspG 1131613 cspG 6962346 cspG Aliivibrio salmonicida LFI1238 cold shock-like protein CspG YP_002265313.1 1131404 R 316275 CDS YP_002265314.1 209809775 6962445 1132091..1132297 1 NC_011313.1 Expression may be regulated by Fur; membrane protein 1132297 6962445 VSAL_II1035 Aliivibrio salmonicida LFI1238 membrane protein YP_002265314.1 1132091 D 316275 CDS YP_002265315.1 209809776 6962347 complement(1132374..1133978) 1 NC_011313.1 Similar to Escherichia coli Small-conductance mechanosensitive channel MscS UniProt:Q2M9R8 (286 aa) fasta scores: E()=5.4e-26, 33.457% id in 269 aa; putative mechanosensitive ion channel protein 1133978 6962347 VSAL_II1036 Aliivibrio salmonicida LFI1238 putative mechanosensitive ion channel protein YP_002265315.1 1132374 R 316275 CDS YP_002265316.1 209809777 6962348 complement(1134318..1134716) 1 NC_011313.1 Similar to Vibrio fischeri Hypothetical protein. UniProt:Q5DYG8 (173 aa) fasta scores: E()=2.3e-39, 83.333% id in 132 aa. The CDS appears to be truncated at the N-terminus; hypothetical protein 1134716 6962348 VSAL_II1037 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265316.1 1134318 R 316275 CDS YP_002265317.1 209809778 6962349 complement(1134865..1135275) 1 NC_011313.1 putative glyoxalase I 1135275 6962349 VSAL_II1038 Aliivibrio salmonicida LFI1238 putative glyoxalase I YP_002265317.1 1134865 R 316275 CDS YP_002265318.1 209809779 6962351 complement(1136308..1137156) 1 NC_011313.1 membrane protein 1137156 6962351 VSAL_II1040 Aliivibrio salmonicida LFI1238 membrane protein YP_002265318.1 1136308 R 316275 CDS YP_002265319.1 209809780 6962352 complement(1137283..1137870) 1 NC_011313.1 transmembrane transporter protein, LysE type translocator 1137870 6962352 VSAL_II1041 Aliivibrio salmonicida LFI1238 transmembrane transporter protein, LysE type translocator YP_002265319.1 1137283 R 316275 CDS YP_002265320.1 209809781 6962353 1137980..1138423 1 NC_011313.1 Similar to Klebsiella aerogenes Leucine-responsive regulatory protein Lrp UniProt:P0A2S1 (163 aa) fasta scores: E()=9.4e-15, 38.462% id in 143 aa; AsnC family transcriptional regulator 1138423 6962353 VSAL_II1042 Aliivibrio salmonicida LFI1238 AsnC family transcriptional regulator YP_002265320.1 1137980 D 316275 CDS YP_002265321.1 209809782 6962354 complement(1138420..1139103) 1 NC_011313.1 putative cation efflux pump 1139103 6962354 VSAL_II1043 Aliivibrio salmonicida LFI1238 putative cation efflux pump YP_002265321.1 1138420 R 316275 CDS YP_002265322.1 209809783 6962355 1139254..1140138 1 NC_011313.1 LysR family transcriptional regulator 1140138 6962355 VSAL_II1044 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002265322.1 1139254 D 316275 CDS YP_002265323.1 209809784 6962356 complement(1140274..1141248) 1 NC_011313.1 hypothetical protein 1141248 6962356 VSAL_II1045 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265323.1 1140274 R 316275 CDS YP_002265324.1 209809785 6962357 complement(1141263..1141955) 1 NC_011313.1 hypothetical protein 1141955 6962357 VSAL_II1046 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265324.1 1141263 R 316275 CDS YP_002265325.1 209809786 6962359 1143436..1144629 1 NC_011313.1 transposase 1144629 6962359 VSAL_II1048 Aliivibrio salmonicida LFI1238 transposase YP_002265325.1 1143436 D 316275 CDS YP_002265326.1 209809787 6962361 1145241..1146728 1 NC_011313.1 transposase 1146728 6962361 VSAL_II1050 Aliivibrio salmonicida LFI1238 transposase YP_002265326.1 1145241 D 316275 CDS YP_002265327.1 209809788 6962363 complement(1147458..1148420) 1 NC_011313.1 Expression may be regulated by Fur; hypothetical protein 1148420 6962363 VSAL_II1052 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265327.1 1147458 R 316275 CDS YP_002265328.1 209809789 6962364 1149059..1149637 1 NC_011313.1 hypothetical protein 1149637 6962364 VSAL_II1053 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265328.1 1149059 D 316275 CDS YP_002265329.1 209809790 6962365 complement(1149643..1150770) 1 NC_011313.1 hypothetical protein 1150770 6962365 VSAL_II1054 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265329.1 1149643 R 316275 CDS YP_002265330.1 209809791 6962366 complement(1151000..1151827) 1 NC_011313.1 putative membrane associated protease 1151827 6962366 VSAL_II1055 Aliivibrio salmonicida LFI1238 putative membrane associated protease YP_002265330.1 1151000 R 316275 CDS YP_002265331.1 209809792 6962367 complement(1152006..1152356) 1 NC_011313.1 putative rhodanese-related sulfurtransferase 1152356 6962367 VSAL_II1056 Aliivibrio salmonicida LFI1238 putative rhodanese-related sulfurtransferase YP_002265331.1 1152006 R 316275 CDS YP_002265332.1 209809793 6962368 1152567..1153679 1 NC_011313.1 Similar to Thermoanaerobacter brockii NADH oxidase UniProt:P32382 (651 aa) fasta scores: E()=1.8e-34, 36.103% id in 349 aa; NADH oxidase 1153679 6962368 VSAL_II1057 Aliivibrio salmonicida LFI1238 NADH oxidase YP_002265332.1 1152567 D 316275 CDS YP_002265333.1 209809794 6962370 complement(1153874..1154440) 1 NC_011313.1 transposase 1154440 6962370 VSAL_II1059 Aliivibrio salmonicida LFI1238 transposase YP_002265333.1 1153874 R 316275 CDS YP_002265334.1 209809795 6962371 complement(1154458..1154880) 1 NC_011313.1 transposase 1154880 6962371 VSAL_II1060 Aliivibrio salmonicida LFI1238 transposase YP_002265334.1 1154458 R 316275 CDS YP_002265335.1 209809796 6962372 1155040..1156281 1 NC_011313.1 membrane associated GGDEF protein 1156281 6962372 VSAL_II1061 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002265335.1 1155040 D 316275 CDS YP_002265336.1 209809797 6962373 complement(1156460..1157008) 1 NC_011313.1 Expression may be regulated by Fur; membrane protein 1157008 6962373 VSAL_II1062 Aliivibrio salmonicida LFI1238 membrane protein YP_002265336.1 1156460 R 316275 CDS YP_002265337.1 209809798 6962375 complement(1158280..1158846) 1 NC_011313.1 transposase 1158846 6962375 VSAL_II1064 Aliivibrio salmonicida LFI1238 transposase YP_002265337.1 1158280 R 316275 CDS YP_002265338.1 209809799 6962376 complement(1158864..1159286) 1 NC_011313.1 transposase 1159286 6962376 VSAL_II1065 Aliivibrio salmonicida LFI1238 transposase YP_002265338.1 1158864 R 316275 CDS YP_002265339.1 209809800 6962377 1159759..1161951 1 NC_011313.1 ornithine decarboxylase 1161951 speF 6962377 speF Aliivibrio salmonicida LFI1238 ornithine decarboxylase YP_002265339.1 1159759 D 316275 CDS YP_002265340.1 209809801 6962588 1162002..1163321 1 NC_011313.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 1163321 potE 6962588 potE Aliivibrio salmonicida LFI1238 putrescine transporter YP_002265340.1 1162002 D 316275 CDS YP_002265341.1 209809802 6962555 complement(1163634..1164245) 1 NC_011313.1 hypothetical protein 1164245 6962555 VSAL_II1068 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265341.1 1163634 R 316275 CDS YP_002265342.1 209809803 6962379 1165426..1166634 1 NC_011313.1 MFS transporter 1166634 6962379 VSAL_II1070 Aliivibrio salmonicida LFI1238 MFS transporter YP_002265342.1 1165426 D 316275 CDS YP_002265343.1 209809804 6962380 complement(1166647..1168224) 1 NC_011313.1 membrane associated GGDEF protein 1168224 6962380 VSAL_II1071 Aliivibrio salmonicida LFI1238 membrane associated GGDEF protein YP_002265343.1 1166647 R 316275 CDS YP_002265344.1 209809805 6962381 complement(1168581..1169120) 1 NC_011313.1 putative cobalamin adenosyltransferase 1169120 6962381 VSAL_II1072 Aliivibrio salmonicida LFI1238 putative cobalamin adenosyltransferase YP_002265344.1 1168581 R 316275 CDS YP_002265345.1 209809806 6962382 complement(1169174..1169761) 1 NC_011313.1 membrane protein 1169761 6962382 VSAL_II1073 Aliivibrio salmonicida LFI1238 membrane protein YP_002265345.1 1169174 R 316275 CDS YP_002265346.1 209809807 6962383 1170040..1170957 1 NC_011313.1 putative iron transporterer, plasmic binding protein 1170957 6962383 VSAL_II1074 Aliivibrio salmonicida LFI1238 putative iron transporterer, plasmic binding protein YP_002265346.1 1170040 D 316275 CDS YP_002265347.1 209809808 6962384 1170954..1171997 1 NC_011313.1 Similar to Yersinia enterocolitica Hemin permease HemU UniProt:P74980 (334 aa) fasta scores: E()=4.5e-34,42.160% id in 287 aa; putative iron transporter, membrane component 1171997 6962384 VSAL_II1075 Aliivibrio salmonicida LFI1238 putative iron transporter, membrane component YP_002265347.1 1170954 D 316275 CDS YP_002265348.1 209809809 6962385 1171994..1172773 1 NC_011313.1 Similar to Pseudomonas aeruginosa ATPase component (Probable ATP-binding component of ABC transporter) PhuV UniProt:O68877 (255 aa) fasta scores: E()=2.1e-23, 37.209% id in 258 aa; putative iron transporter ATP-binding protein 1172773 6962385 VSAL_II1076 Aliivibrio salmonicida LFI1238 putative iron transporter ATP-binding protein YP_002265348.1 1171994 D 316275 CDS YP_002265349.1 209809810 6962386 complement(1172856..1174232) 1 NC_011313.1 L-serine dehydratase 1174232 sdaA 6962386 sdaA Aliivibrio salmonicida LFI1238 L-serine dehydratase YP_002265349.1 1172856 R 316275 CDS YP_002265350.1 209809811 6962387 complement(1175573..1176295) 1 NC_011313.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 1176295 frp 6962387 frp Aliivibrio salmonicida LFI1238 nitroreductase A YP_002265350.1 1175573 R 316275 CDS YP_002265351.1 209809812 6962462 complement(1176491..1177060) 1 NC_011313.1 membrane protein 1177060 6962462 VSAL_II1080 Aliivibrio salmonicida LFI1238 membrane protein YP_002265351.1 1176491 R 316275 CDS YP_002265352.1 209809813 6962429 1177432..1178340 1 NC_011313.1 LysR family transcriptional regulator 1178340 6962429 VSAL_II1081 Aliivibrio salmonicida LFI1238 LysR family transcriptional regulator YP_002265352.1 1177432 D 316275 CDS YP_002265353.1 209809814 6962389 1178465..1179421 1 NC_011313.1 transposase 1179421 6962389 VSAL_II1082 Aliivibrio salmonicida LFI1238 transposase YP_002265353.1 1178465 D 316275 CDS YP_002265354.1 209809815 6962390 1179485..1180249 1 NC_011313.1 hypothetical protein 1180249 6962390 VSAL_II1083 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265354.1 1179485 D 316275 CDS YP_002265355.1 209809816 6962391 complement(1180293..1181204) 1 NC_011313.1 putative 4Fe-4S ferredoxin, iron-sulfur binding 1181204 6962391 VSAL_II1084 Aliivibrio salmonicida LFI1238 putative 4Fe-4S ferredoxin, iron-sulfur binding YP_002265355.1 1180293 R 316275 CDS YP_002265356.1 209809817 6962393 1181852..1183045 1 NC_011313.1 transposase 1183045 6962393 VSAL_II1086 Aliivibrio salmonicida LFI1238 transposase YP_002265356.1 1181852 D 316275 CDS YP_002265357.1 209809818 6962395 complement(1184192..1184797) 1 NC_011313.1 hypothetical protein 1184797 6962395 VSAL_II1088 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265357.1 1184192 R 316275 CDS YP_002265358.1 209809819 6962397 complement(1185580..1187067) 1 NC_011313.1 transposase 1187067 6962397 VSAL_II1090 Aliivibrio salmonicida LFI1238 transposase YP_002265358.1 1185580 R 316275 CDS YP_002265359.1 209809820 6962398 complement(1187139..1187486) 1 NC_011313.1 transposase 1187486 6962398 VSAL_II1091 Aliivibrio salmonicida LFI1238 transposase YP_002265359.1 1187139 R 316275 CDS YP_002265360.1 209809821 6962430 complement(1188040..1188537) 1 NC_011313.1 hypothetical protein 1188537 6962430 VSAL_II1093 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265360.1 1188040 R 316275 CDS YP_002265361.1 209809822 6962401 complement(1188651..1189595) 1 NC_011313.1 protein alx 1189595 6962401 VSAL_II1094 Aliivibrio salmonicida LFI1238 protein alx YP_002265361.1 1188651 R 316275 CDS YP_002265362.1 209809823 6962402 1189986..1191149 1 NC_011313.1 hypothetical protein 1191149 6962402 VSAL_II1095 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265362.1 1189986 D 316275 CDS YP_002265363.1 209809824 6962404 1193610..1194803 1 NC_011313.1 transposase 1194803 6962404 VSAL_II1097 Aliivibrio salmonicida LFI1238 transposase YP_002265363.1 1193610 D 316275 CDS YP_002265364.1 209809825 6962405 complement(1194983..1197106) 1 NC_011313.1 Similar to Bordetella pertussis CyaB UniProt:P18770 (712 aa) fasta scores: E()=5.1e-51, 30.273% id in 697 aa; ABC transporter ATP-binding protein 1197106 6962405 VSAL_II1098 Aliivibrio salmonicida LFI1238 ABC transporter ATP-binding protein YP_002265364.1 1194983 R 316275 CDS YP_002265365.1 209809826 6962406 complement(1197099..1199024) 1 NC_011313.1 membrane signal transduction protein 1199024 6962406 VSAL_II1099 Aliivibrio salmonicida LFI1238 membrane signal transduction protein YP_002265365.1 1197099 R 316275 CDS YP_002265366.1 209809827 6962408 complement(1199722..1201113) 1 NC_011313.1 Expression may be regulated by Fur; secretion protein, HlyD family 1201113 6962408 VSAL_II1101 Aliivibrio salmonicida LFI1238 secretion protein, HlyD family YP_002265366.1 1199722 R 316275 CDS YP_002265367.1 209809828 6962409 complement(1201326..1203479) 1 NC_011313.1 putative exported ATPase protein 1203479 6962409 VSAL_II1102 Aliivibrio salmonicida LFI1238 putative exported ATPase protein YP_002265367.1 1201326 R 316275 CDS YP_002265368.1 209809829 6962410 1203582..1204154 1 NC_011313.1 hypothetical protein 1204154 6962410 VSAL_II1103 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265368.1 1203582 D 316275 CDS YP_002265369.1 209809830 6962411 complement(1204240..1205214) 1 NC_011313.1 Similar to Yersinia pestis Plasmid partitioning control protein SopB UniProt:O68706 (320 aa) fasta scores: E()=3.4e-14, 32.273% id in 220 aa; putative plasmid partition protein 1205214 6962411 VSAL_II1104 Aliivibrio salmonicida LFI1238 putative plasmid partition protein YP_002265369.1 1204240 R 316275 CDS YP_002265370.1 209809831 6962412 complement(1205218..1206441) 1 NC_011313.1 Similar to Proteus vulgaris ParA UniProt:Q8L255 (401 aa) fasta scores: E()=2.4e-25, 29.412% id in 391 aa; putative plasmid partition protein 1206441 parA 6962412 parA Aliivibrio salmonicida LFI1238 putative plasmid partition protein YP_002265370.1 1205218 R 316275 CDS YP_002265371.1 209967945 6962653 complement(127..336) 1 NC_011314.1 hypothetical protein 336 6962653 VSAL_p320_01 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265371.1 127 R 316275 CDS YP_002265372.1 209967946 6962622 complement(417..1130) 1 NC_011314.1 hypothetical protein 1130 6962622 VSAL_p320_02 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265372.1 417 R 316275 CDS YP_002265373.1 209967947 6962623 1404..2033 1 NC_011314.1 Similar to Escherichia coli Resolvase parA UniProt:P22996 (219 aa) fasta scores: E()=1.6e-17, 38.308% id in 201 aa; resolvase 2033 6962623 VSAL_p320_03 Aliivibrio salmonicida LFI1238 resolvase YP_002265373.1 1404 D 316275 CDS YP_002265374.1 209967948 6962624 complement(2052..2363) 1 NC_011314.1 hypothetical protein 2363 6962624 VSAL_p320_04 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265374.1 2052 R 316275 CDS YP_002265375.1 209967949 6962625 complement(2356..2643) 1 NC_011314.1 Similar to Vibrio fischeri Hypothetical protein UniProt:Q5DYK6 (80 aa) fasta scores: E()=1.7e-22, 76.923% id in 78 aa. Orthologues are identified on chromosomal DNA in other vibrios; hypothetical protein 2643 6962625 VSAL_p320_05 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265375.1 2356 R 316275 CDS YP_002265376.1 209967950 6962626 complement(2975..3964) 1 NC_011314.1 membrane protein 3964 6962626 VSAL_p320_06 Aliivibrio salmonicida LFI1238 membrane protein YP_002265376.1 2975 R 316275 CDS YP_002265377.1 209967951 6962627 complement(4063..4302) 1 NC_011314.1 hypothetical protein 4302 6962627 VSAL_p320_07 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265377.1 4063 R 316275 CDS YP_002265378.1 209967952 6962628 complement(4334..4969) 1 NC_011314.1 DNA-binding protein, putative plasmid partition protein 4969 6962628 VSAL_p320_08 Aliivibrio salmonicida LFI1238 DNA-binding protein, putative plasmid partition protein YP_002265378.1 4334 R 316275 CDS YP_002265379.1 209967953 6962629 5190..5381 1 NC_011314.1 hypothetical protein 5381 6962629 VSAL_p320_09 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265379.1 5190 D 316275 CDS YP_002265380.1 209967954 6962630 complement(5398..5991) 1 NC_011314.1 hypothetical protein 5991 6962630 VSAL_p320_10 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265380.1 5398 R 316275 CDS YP_002265381.1 209967955 6962631 complement(6403..6702) 1 NC_011314.1 putative DNA-damage-inducible protein 6702 6962631 VSAL_p320_11 Aliivibrio salmonicida LFI1238 putative DNA-damage-inducible protein YP_002265381.1 6403 R 316275 CDS YP_002265382.1 209967956 6962632 complement(7493..8353) 1 NC_011314.1 hypothetical protein 8353 6962632 VSAL_p320_12 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265382.1 7493 R 316275 CDS YP_002265383.1 209967957 6962633 complement(8744..9361) 1 NC_011314.1 Similar to Bacteriophage phi-80 Repressor protein CI UniProt:P14819 (235 aa) fasta scores: E()=1.5e-07,29.060% id in 234 aa; putative peptidase, S24-like 9361 6962633 VSAL_p320_13 Aliivibrio salmonicida LFI1238 putative peptidase, S24-like YP_002265383.1 8744 R 316275 CDS YP_002265384.1 209967958 6962634 9539..9706 1 NC_011314.1 hypothetical protein 9706 6962634 VSAL_p320_14 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265384.1 9539 D 316275 CDS YP_002265385.1 209967959 6962635 10109..10279 1 NC_011314.1 hypothetical protein 10279 6962635 VSAL_p320_15 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265385.1 10109 D 316275 CDS YP_002265386.1 209967960 6962636 10515..11087 1 NC_011314.1 hypothetical protein 11087 6962636 VSAL_p320_16 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265386.1 10515 D 316275 CDS YP_002265387.1 209967961 6962638 11555..12634 1 NC_011314.1 Identical to Aliivibrio salmonicida Plasmid pVS43 Putative transposase UniProt:Q5EJX2 (359 aa) fasta scores: E()=2.3e-156, 99.721% id in 359 aa; putative transposase 12634 6962638 VSAL_p320_18 Aliivibrio salmonicida LFI1238 putative transposase YP_002265387.1 11555 D 316275 CDS YP_002265388.1 209967962 6962639 complement(13144..14130) 1 NC_011314.1 putative antirestriction protein 14130 6962639 VSAL_p320_19 Aliivibrio salmonicida LFI1238 putative antirestriction protein YP_002265388.1 13144 R 316275 CDS YP_002265389.1 209967963 6962640 complement(14093..14638) 1 NC_011314.1 CDS contains a rare Valine start codon (GTA); hypothetical protein 14638 6962640 VSAL_p320_20 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265389.1 14093 R 316275 CDS YP_002265390.1 209967964 6962641 complement(15125..15391) 1 NC_011314.1 hypothetical protein 15391 6962641 VSAL_p320_21 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265390.1 15125 R 316275 CDS YP_002265391.1 209967965 6962642 15528..16211 1 NC_011314.1 hypothetical protein 16211 6962642 VSAL_p320_22 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265391.1 15528 D 316275 CDS YP_002265392.1 209967966 6962643 complement(16310..16576) 1 NC_011314.1 hypothetical protein 16576 6962643 VSAL_p320_23 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265392.1 16310 R 316275 CDS YP_002265393.1 209967967 6962644 16858..19917 1 NC_011314.1 Weakly similar to Enterococcus faecium Transposase for transposon Tn1546 UniProt:Q06238 (988 aa) fasta scores: E()=5.5e-41, 25.488% id in 1024 aa; transposase 19917 6962644 VSAL_p320_24 Aliivibrio salmonicida LFI1238 transposase YP_002265393.1 16858 D 316275 CDS YP_002265394.1 209967968 6962652 complement(21116..22195) 1 NC_011314.1 Identical to Aliivibrio salmonicida Plasmid pVS43 Putative transposase UniProt:Q5EJX2 (359 aa) fasta scores: E()=2.3e-156, 99.721% id in 359 aa; putative transposase 22195 6962652 VSAL_p320_26 Aliivibrio salmonicida LFI1238 putative transposase YP_002265394.1 21116 R 316275 CDS YP_002265395.1 209967969 6962646 22851..23915 1 NC_011314.1 Experimentally shown to be regulated by iron. Predicted Fur boxes indicate direct Fur regulation; iron ion ABC transporter, periplasmic component 23915 6962646 VSAL_p320_27 Aliivibrio salmonicida LFI1238 iron ion ABC transporter, periplasmic component YP_002265395.1 22851 D 316275 CDS YP_002265396.1 209967970 6962647 23912..24955 1 NC_011314.1 Similar to Gluconacetobacter diazotrophicus ABC-type Fe3+ transport system permease component FeuB UniProt:Q288C8 (342 aa) fasta scores: E()=1.8e-30, 37.771% id in 323 aa; iron ion transport system, inner membrane component 24955 6962647 VSAL_p320_28 Aliivibrio salmonicida LFI1238 iron ion transport system, inner membrane component YP_002265396.1 23912 D 316275 CDS YP_002265397.1 209967971 6962648 24948..25694 1 NC_011314.1 iron ion ABC transporter ATP-binding protein 25694 6962648 VSAL_p320_29 Aliivibrio salmonicida LFI1238 iron ion ABC transporter ATP-binding protein YP_002265397.1 24948 D 316275 CDS YP_002265398.1 209967972 6962649 25691..26980 1 NC_011314.1 hypothetical protein 26980 6962649 VSAL_p320_30 Aliivibrio salmonicida LFI1238 hypothetical protein YP_002265398.1 25691 D 316275 CDS YP_002265399.1 209967973 6962650 complement(27160..28497) 1 NC_011314.1 putative phage intergrase 28497 6962650 VSAL_p320_31 Aliivibrio salmonicida LFI1238 putative phage intergrase YP_002265399.1 27160 R 316275 CDS YP_002265400.1 209809833 6989608 346..1212 1 NC_011315.1 Weakly similar to Plasmid ColIb-P9 Replication initiation protein RepZ UniProt:Q7DJZ7 (343 aa) fasta scores: E()=0.06, 24.111% id in 253 aa; putative replication initiation protein 1212 repZ 6989608 repZ Aliivibrio salmonicida LFI1238 putative replication initiation protein YP_002265400.1 346 D 316275 CDS YP_002265401.1 209809834 6989604 complement(1648..2388) 1 NC_011315.1 Similar to Escherichia coli MobC-like protein UniProt:Q6XGE7 (248 aa) fasta scores: E()=0.0018, 25.692% id in 253 aa; putative mobilization protein 2388 6989604 VSAL_p54_02 Aliivibrio salmonicida LFI1238 putative mobilization protein YP_002265401.1 1648 R 316275 CDS YP_002265402.1 209809835 6989606 3432..5360 1 NC_011315.1 Weakly similar to Salmonella typhimurium O-antigen acetylase OafA UniProt:P74874 (609 aa) fasta scores: E()=6.3e-54, 33.591% id in 646 aa; acyltransferase 5360 6989606 VSAL_p54_03 Aliivibrio salmonicida LFI1238 acyltransferase YP_002265402.1 3432 D 316275 CDS YP_002265403.1 215538593 6962657 281..940 1 NC_011316.1 putative replication initiation protein 940 repA 6962657 repA Aliivibrio salmonicida LFI1238 putative replication initiation protein YP_002265403.1 281 D 316275 CDS YP_002265404.1 215538594 6962656 complement(1028..1993) 1 NC_011316.1 Weakly similar to Bacteriophage Sf6 O-acetyl transferase UniProt:P23214 (333 aa) fasta scores: E()=4.2e-11, 28.614% id in 339 aa; acetyltransferase 1993 6962656 VSAL_p43_02 Aliivibrio salmonicida LFI1238 acetyltransferase YP_002265404.1 1028 R 316275 CDS YP_002265405.1 215538595 6962655 2287..3366 1 NC_011316.1 transposase, IS91 family 3366 6962655 VSAL_p43_03 Aliivibrio salmonicida LFI1238 transposase, IS91 family YP_002265405.1 2287 D 316275 CDS