-- dump date 20140618_193823 -- class Genbank::CDS -- table cds_note -- id note YP_004385957.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: dia:Dtpsy_0001 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal YP_004385958.1 SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dia:Dtpsy_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain, C-terminal; DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, central YP_004385959.1 TIGRFAM: DNA gyrase, subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: dia:Dtpsy_0003 DNA gyrase, B subunit; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain YP_004385961.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: sbl:Sbal_4355 XRE family transcriptional regulator; SMART: Helix-turn-helix type 3 YP_004385962.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004385963.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004385964.1 KEGG: cyp:PCC8801_1290 hypothetical protein YP_004385965.1 PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_0006 protein of unknown function UPF0153 YP_004385966.1 KEGG: reh:H16_A2137 acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III YP_004385967.1 PFAM: Crotonase, core; KEGG: reh:H16_A2138 enoyl-CoA hydratase/carnithine racemase YP_004385968.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reh:H16_A2139 LysR family transcriptional regulator YP_004385969.1 KEGG: reh:H16_A2140 extra-cytoplasmic solute receptor YP_004385970.1 PFAM: Protein of unknown function DUF1446; KEGG: reh:H16_A2141 hypothetical protein YP_004385971.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: xtr:100489724 acetyl-/propionyl-coenzyme A carboxylase alpha chain-like; SMART: Biotin carboxylase, C-terminal YP_004385972.1 KEGG: reh:H16_A2143 acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004385973.1 KEGG: reh:H16_A2144 propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase YP_004385974.1 PFAM: Acylphosphatase-like; KEGG: ajs:Ajs_4152 acylphosphatase YP_004385975.1 PFAM: 4Fe-4S binding domain; KEGG: ajs:Ajs_4153 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004385976.1 PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; KEGG: ajs:Ajs_4155 homoserine dehydrogenase YP_004385977.1 KEGG: ajs:Ajs_4158 ATP-dependent DNA helicase DinG; PFAM: DEAD2; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal YP_004385978.1 PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: ajs:Ajs_4160 DNA polymerase III, epsilon subunit; SMART: Exonuclease YP_004385979.1 PFAM: NLP/P60; KEGG: ajs:Ajs_0001 NLP/P60 protein YP_004385980.1 TIGRFAM: DHAP synthase, class 1; KEGG: ajs:Ajs_0002 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004385981.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold; Diguanylate cyclase, predicted; GAF; KEGG: dia:Dtpsy_0021 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; GAF YP_004385982.1 KEGG: dia:Dtpsy_0022 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004385983.1 KEGG: ajs:Ajs_0005 hypothetical protein YP_004385984.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: axy:AXYL_04409 acyl-CoA dehydrogenase, C-terminal domain-containing protein 1 YP_004385985.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: axy:AXYL_04410 acyl-CoA dehydrogenase, middle domain-containing protein 12 YP_004385986.1 KEGG: axy:AXYL_04411 extra-cytoplasmic solute receptor family protein 110 YP_004385987.1 KEGG: rme:Rmet_0842 CoA-binding; PFAM: CoA-binding; ATP-grasp fold, succinyl-CoA synthetase-type; SMART: CoA-binding YP_004385988.1 PFAM: Crotonase, core; KEGG: rme:Rmet_0841 enoyl-CoA hydratase YP_004385989.1 KEGG: bpt:Bpet3285 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004385990.1 PFAM: Lipid A 3-O-deacylase-related; KEGG: dia:Dtpsy_0024 hypothetical protein YP_004385991.1 PFAM: Domain of unknown function DUF1520; KEGG: ajs:Ajs_0007 hypothetical protein YP_004385992.1 PFAM: Putative exonuclease, RdgC; KEGG: ajs:Ajs_0008 recombination associated protein YP_004385993.1 PFAM: Nucleoside recognition; KEGG: ajs:Ajs_0012 nucleoside recognition domain-containing protein YP_004385994.1 KEGG: dia:Dtpsy_0031 hypothetical protein YP_004385995.1 KEGG: blt:Balat_0053 beta-galactosidase I YP_004385996.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: dia:Dtpsy_0035 transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR YP_004385997.1 PFAM: Heavy metal transport/detoxification protein; KEGG: dia:Dtpsy_0036 heavy metal transport/detoxification protein YP_004385998.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_0037 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004385999.1 KEGG: ajs:Ajs_0020 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004386000.1 KEGG: aav:Aave_0038 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004386001.1 TIGRFAM: Secretion protein HlyD; KEGG: aav:Aave_0039 RND family efflux transporter MFP subunit YP_004386002.1 PFAM: Outer membrane efflux protein; KEGG: xtr:100485479 hypothetical protein LOC100485479 YP_004386003.1 KEGG: aav:Aave_0041 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004386004.1 KEGG: aav:Aave_0042 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004386005.1 KEGG: dia:Dtpsy_0040 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004386006.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: dia:Dtpsy_0042 glutathione S-transferase domain protein YP_004386007.1 PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_0043 protein of unknown function UPF0153 YP_004386008.1 PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_0044 NADPH-dependent FMN reductase YP_004386009.1 KEGG: dia:Dtpsy_0045 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose-inhibited division protein A-related YP_004386010.1 KEGG: pct:PC1_0787 hypothetical protein YP_004386011.1 KEGG: dia:Dtpsy_0046 16S rRNA methyltransferase GidB; TIGRFAM: rRNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G YP_004386012.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dia:Dtpsy_0047 lysine exporter protein (LysE/YggA) YP_004386013.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_0048 cobyrinic acid ac-diamide synthase YP_004386014.1 PFAM: Protein of unknown function DUF1234; KEGG: ajs:Ajs_0030 hypothetical protein YP_004386015.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: aav:Aave_0056 chromosome segregation DNA-binding protein; SMART: ParB-like nuclease YP_004386016.1 KEGG: ajs:Ajs_0032 methyltransferase type 12 YP_004386017.1 PFAM: Peptidoglycan binding-like; KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein YP_004386018.1 KEGG: dia:Dtpsy_0054 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004386019.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0055 major facilitator superfamily MFS_1 YP_004386020.1 PFAM: Mechanosensitive ion channel MscS; KEGG: bpy:Bphyt_0752 MscS mechanosensitive ion channel YP_004386022.1 KEGG: ajs:Ajs_0040 fis family transcriptional regulator; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_004386023.1 KEGG: dia:Dtpsy_0062 calcium-binding EF-hand-containing protein YP_004386024.1 TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: dia:Dtpsy_0063 ATP/cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type YP_004386025.1 KEGG: ajs:Ajs_0044 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004386026.1 TIGRFAM: Succinate CoA transferase; KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase; PFAM: Acetyl-CoA hydrolase/transferase YP_004386027.1 KEGG: dia:Dtpsy_0067 hypothetical protein YP_004386028.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rme:Rmet_5369 putative LysR family transcriptional regulator YP_004386029.1 KEGG: reu:Reut_B4598 hypothetical protein YP_004386030.1 KEGG: bbr:BB2766 putative short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004386031.1 KEGG: vap:Vapar_0736 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004386032.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: axy:AXYL_01971 carboxymuconolactone decarboxylase family protein 2 YP_004386033.1 KEGG: ajs:Ajs_0048 uracil-xanthine permease; TIGRFAM: Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease YP_004386034.1 TIGRFAM: Methyltransferase FkbM; KEGG: sna:Snas_6312 methyltransferase FkbM family YP_004386035.1 KEGG: ajs:Ajs_0052 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding YP_004386036.1 TIGRFAM: Acetoacetyl-CoA synthase; KEGG: dia:Dtpsy_0074 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004386037.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0055 LysR family transcriptional regulator YP_004386038.1 KEGG: ajs:Ajs_0056 hypothetical protein YP_004386039.1 KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004386040.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: ajs:Ajs_0062 acyl-CoA dehydrogenase domain-containing protein YP_004386041.1 PFAM: Crotonase, core; KEGG: ajs:Ajs_0063 enoyl-CoA hydratase YP_004386042.1 manually curated; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; KEGG: dia:Dtpsy_0083 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004386043.1 KEGG: rpt:Rpal_2080 hypothetical protein YP_004386044.1 TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: dia:Dtpsy_0084 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal YP_004386045.1 KEGG: dia:Dtpsy_0085 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase YP_004386046.1 KEGG: dia:Dtpsy_0086 cell division topological specificity factor MinE; TIGRFAM: Septum formation topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE YP_004386047.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_1015 LysR family transcriptional regulator YP_004386048.1 KEGG: pol:Bpro_4513 hypothetical protein YP_004386049.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: mes:Meso_4537 galactonate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004386050.1 manually curated; PFAM: Flavin reductase-like, FMN-binding; KEGG: ajs:Ajs_0068 flavin reductase domain-containing protein; SMART: Flavin reductase-like, FMN-binding YP_004386051.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_0088 alpha/beta hydrolase fold protein YP_004386052.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_0073 TetR family transcriptional regulator YP_004386053.1 PFAM: UspA; KEGG: ajs:Ajs_0074 UspA domain-containing protein YP_004386054.1 PFAM: Metallo-dependent phosphatase; KEGG: ajs:Ajs_0075 metallophosphoesterase YP_004386055.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0076 LysR family transcriptional regulator YP_004386056.1 KEGG: ajs:Ajs_0077 hypothetical protein YP_004386057.1 KEGG: dac:Daci_0114 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, GTP-utilising YP_004386058.1 KEGG: dia:Dtpsy_0098 hypothetical protein YP_004386059.1 KEGG: dia:Dtpsy_0099 threonine dehydratase; TIGRFAM: Threonine dehydratase II; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Amino acid-binding ACT YP_004386060.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: ajs:Ajs_0081 acyl-CoA dehydrogenase domain-containing protein YP_004386061.1 SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, magnesium-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: pfl:PFL_4078 magnesium-transporting ATPase MgtA; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004386062.1 KEGG: ajs:Ajs_0083 methionine synthase (B12-dependent); PFAM: Homocysteine S-methyltransferase YP_004386063.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_0175 LysR family transcriptional regulator YP_004386064.1 KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004386065.1 PFAM: Cupin 2, conserved barrel; KEGG: aav:Aave_0177 cupin 2 domain-containing protein YP_004386066.1 KEGG: xtr:100487983 UPF0065 protein in clcB-clcD intergenic region-like YP_004386067.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: dia:Dtpsy_0103 ATP-dependent DNA helicase RecQ; SMART: RQC domain; Helicase, C-terminal; DEAD-like helicase, N-terminal; Helicase/RNase D C-terminal, HRDC domain YP_004386068.1 KEGG: ajs:Ajs_0085 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic-like; PFAM: Radical SAM YP_004386069.1 KEGG: dia:Dtpsy_0105 hypothetical protein YP_004386070.1 KEGG: dia:Dtpsy_0106 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; PFAM: ATP-cone YP_004386071.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; PAS fold-4; KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif; PAS YP_004386072.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: dia:Dtpsy_0108 hemerythrin HHE cation binding domain-containing protein YP_004386073.1 KEGG: dia:Dtpsy_0109 nitric oxide reductase large subunit YP_004386074.1 KEGG: dia:Dtpsy_0110 anaerobic nitric oxide reductase transcription regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004386075.1 PFAM: Domain of unknown function DUF1794; KEGG: ctt:CtCNB1_2843 hypothetical protein YP_004386076.1 TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: dia:Dtpsy_0112 L-serine dehydratase 1; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain YP_004386077.1 KEGG: xtr:100490070 protein bugT-like YP_004386078.1 KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004386079.1 KEGG: ajs:Ajs_0099 hypothetical protein YP_004386080.1 KEGG: dia:Dtpsy_0117 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004386081.1 KEGG: dia:Dtpsy_0118 hypothetical protein YP_004386082.1 KEGG: dia:Dtpsy_0119 hypothetical protein YP_004386083.1 KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004386084.1 KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004386085.1 TIGRFAM: Thiolase; KEGG: dia:Dtpsy_0122 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004386086.1 KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004386087.1 KEGG: dia:Dtpsy_0125 hypothetical protein YP_004386088.1 KEGG: ajs:Ajs_0109 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004386090.1 KEGG: dia:Dtpsy_0128 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004386091.1 KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004386092.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: reh:H16_A2147 hypothetical protein YP_004386093.1 KEGG: reh:H16_A2148 acetyl-CoA acetyltransferase YP_004386094.1 KEGG: reh:H16_A2149 acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004386095.1 KEGG: reh:H16_A2150 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004386096.1 KEGG: reh:H16_A2151 putative acyl dehydratase; PFAM: MaoC-like dehydratase YP_004386097.1 KEGG: reh:H16_A2152 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004386098.1 KEGG: reh:H16_A2153 extra-cytoplasmic solute receptor YP_004386099.1 KEGG: reh:H16_A2154 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal YP_004386100.1 KEGG: ajs:Ajs_0113 major facilitator superfamily transporter; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004386101.1 KEGG: dia:Dtpsy_0131 HpcH/HpaI aldolase; PFAM: Aldehyde-lyase domain YP_004386102.1 KEGG: dia:Dtpsy_0133 hypothetical protein YP_004386103.1 PFAM: MmgE/PrpD; KEGG: dia:Dtpsy_0134 MmgE/PrpD family protein YP_004386104.1 KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004386105.1 KEGG: dac:Daci_0198 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004386106.1 KEGG: dia:Dtpsy_0137 hypothetical protein YP_004386107.1 KEGG: dia:Dtpsy_0138 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004386108.1 KEGG: ajs:Ajs_0121 dehydratase; PFAM: MaoC-like dehydratase YP_004386109.1 PFAM: Crotonase, core; KEGG: dia:Dtpsy_0140 enoyl-CoA hydratase/isomerase YP_004386110.1 PFAM: Acetyl-CoA hydrolase/transferase; KEGG: ajs:Ajs_0123 acetyl-CoA hydrolase/transferase YP_004386111.1 TIGRFAM: Thiolase; KEGG: ajs:Ajs_0124 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004386112.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0188 LysR family transcriptional regulator YP_004386113.1 KEGG: dac:Daci_0189 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004386114.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dac:Daci_0190 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase YP_004386115.1 KEGG: xtr:100498142 UPF0065 protein in clcB-clcD intergenic region-like YP_004386116.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_3679 LysR family transcriptional regulator YP_004386117.1 KEGG: aav:Aave_3678 hypothetical protein YP_004386118.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: aav:Aave_3677 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004386119.1 KEGG: ajs:Ajs_0125 hypothetical protein YP_004386120.1 KEGG: dac:Daci_0186 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase YP_004386121.1 KEGG: xtr:100497979 hypothetical protein LOC100497979 YP_004386122.1 KEGG: reh:H16_B1474 extra-cytoplasmic solute receptor YP_004386123.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; manually curated; KEGG: reu:Reut_B4300 peptidase M20D, amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase YP_004386124.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: ajs:Ajs_0128 hypothetical protein YP_004386125.1 PFAM: Thiolase, C-terminal; KEGG: ajs:Ajs_0129 thiolase YP_004386126.1 KEGG: dia:Dtpsy_0148 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004386127.1 KEGG: dac:Daci_0175 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004386128.1 KEGG: vei:Veis_2216 regulatory proteins, IclR; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal YP_004386129.1 KEGG: vei:Veis_2212 hypothetical protein YP_004386130.1 KEGG: vei:Veis_2211 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004386131.1 KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004386132.1 KEGG: axy:AXYL_05145 methylcrotonoyl-CoA carboxylase subunit beta; PFAM: Carboxyl transferase YP_004386133.1 KEGG: reu:Reut_B4462 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004386134.1 PFAM: Crotonase, core; KEGG: vei:Veis_2207 enoyl-CoA hydratase/isomerase YP_004386135.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: reu:Reut_B4460 carbamoyl-phosphate synthase subunit L; SMART: Biotin carboxylase, C-terminal YP_004386136.1 PFAM: Protein of unknown function DUF1446; KEGG: reu:Reut_B4459 hypothetical protein YP_004386137.1 KEGG: axy:AXYL_05150 extra-cytoplasmic solute receptor family protein 140 YP_004386138.1 KEGG: vei:Veis_2206 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004386139.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0150 transcriptional regulator, LysR family YP_004386140.1 KEGG: dia:Dtpsy_0151 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004386141.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_0218 transcriptional regulator, LysR family YP_004386142.1 KEGG: ctt:CtCNB1_0219 twin-arginine translocation pathway signal YP_004386143.1 KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004386144.1 PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: dia:Dtpsy_0153 Glu/Leu/Phe/Val dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_004386145.1 PFAM: Transmembrane pair, bacterial; KEGG: dia:Dtpsy_0156 transmembrane pair domain protein YP_004386146.1 PFAM: SdiA-regulated; KEGG: psa:PST_0402 hypothetical protein YP_004386147.1 TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: dac:Daci_0232 methionine synthase; PFAM: Vitamin B12-dependent methionine synthase, activation domain; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Pterin-binding YP_004386148.1 TIGRFAM: CRISPR-associated protein, SAG0894; KEGG: vei:Veis_1230 CRISPR-associated endonuclease Csn1 family protein YP_004386149.1 KEGG: vei:Veis_1231 CRISPR-associated Cas1 family protein; TIGRFAM: CRISPR-associated protein Cas1, NMENI subtype; CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1 YP_004386150.1 KEGG: vei:Veis_1232 CRISPR-associated Cas2 family protein; TIGRFAM: CRISPR associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2 YP_004386151.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66 YP_004386152.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_004386153.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911 YP_004386154.1 KEGG: mpt:Mpe_A2996 putative transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004386155.1 KEGG: dia:Dtpsy_0168 shikimate kinase; PFAM: Shikimate kinase YP_004386156.1 PFAM: Ribonuclease BN-related; KEGG: ajs:Ajs_0151 ribonuclease BN YP_004386157.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: ajs:Ajs_0152 17 kDa surface antigen YP_004386158.1 KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding YP_004386159.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_0172 extracellular ligand-binding receptor YP_004386160.1 PFAM: ABC transporter permease; KEGG: ajs:Ajs_0155 inner-membrane translocator YP_004386161.1 PFAM: ABC transporter-like; KEGG: vei:Veis_0860 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386162.1 KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal YP_004386163.1 TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: dia:Dtpsy_0179 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core YP_004386164.1 KEGG: dia:Dtpsy_0180 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02001; PFAM: Conserved hypothetical protein CHP02001 YP_004386165.1 KEGG: aav:Aave_0233 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII YP_004386166.1 KEGG: ajs:Ajs_0164 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_004386167.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004386168.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004386170.1 KEGG: esa:ESA_04058 hypothetical protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004386171.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: axy:AXYL_03189 alpha/beta hydrolase fold family protein 10 YP_004386172.1 KEGG: axy:AXYL_03188 hypothetical protein YP_004386173.1 KEGG: vap:Vapar_4786 membrane protein AbrB duplication; TIGRFAM: AbrB duplication, membrane protein; PFAM: Putative ammonia monooxygenase YP_004386174.1 KEGG: rme:Rmet_5425 putative butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004386175.1 KEGG: vei:Veis_3320 hypothetical protein YP_004386176.1 KEGG: dac:Daci_1885 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding YP_004386177.1 PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: dia:Dtpsy_0184 FAD linked oxidase domain protein YP_004386178.1 PFAM: Protein of unknown function DUF1275; KEGG: dia:Dtpsy_0185 protein of unknown function DUF1275 YP_004386179.1 PFAM: Cysteine-rich domain; 4Fe-4S binding domain; KEGG: ajs:Ajs_0168 glycolate oxidase iron-sulfur subunit YP_004386180.1 KEGG: dia:Dtpsy_0187 ProQ activator of osmoprotectant transporter ProP; PFAM: Fertility inhibition FinO/ProQ; SMART: Fertility inhibition FinO/ProQ YP_004386181.1 PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0174 hypothetical protein YP_004386182.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0193 lysophospholipid transporter LplT YP_004386183.1 PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: ajs:Ajs_0176 alanine racemase YP_004386184.1 KEGG: dia:Dtpsy_0196 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; Cytochrome c, class I YP_004386185.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_0197 glutathione S-transferase domain protein YP_004386186.1 TIGRFAM: DNA repair protein RadA; PFAM: Circadian clock protein KaiC/DNA repair protein RadA; KEGG: dia:Dtpsy_0199 DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_004386187.1 KEGG: rme:Rmet_1769 hypothetical protein YP_004386188.1 PFAM: Amidase; KEGG: reh:H16_A1882 Asp-tRNA Asn / Glu-tRNA Gln amidotransferase A subunit or related amidase YP_004386189.1 KEGG: ajs:Ajs_0181 hypothetical protein YP_004386190.1 TIGRFAM: Branched-chain amino acid aminotransferase I; KEGG: ajs:Ajs_0182 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004386191.1 KEGG: ajs:Ajs_0183 hypothetical protein YP_004386192.1 PFAM: O-antigen ligase-related; KEGG: ajs:Ajs_0184 O-antigen polymerase YP_004386193.1 PFAM: Glycosyl transferase, group 1; KEGG: ajs:Ajs_0185 glycosyl transferase, group 1 YP_004386194.1 PFAM: Glycosyl transferase, family 2; KEGG: ajs:Ajs_0186 glycosyl transferase family protein YP_004386195.1 KEGG: ajs:Ajs_0187 hypothetical protein YP_004386196.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_0188 2-nitropropane dioxygenase, NPD YP_004386197.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0189 LysR family transcriptional regulator YP_004386198.1 PFAM: Domain of unknown function DUF1228; KEGG: dia:Dtpsy_0209 protein of unknown function DUF1228 YP_004386199.1 PFAM: Molybdenum cofactor sulfurase, C-terminal; KEGG: dia:Dtpsy_0210 MOSC domain containing protein YP_004386200.1 PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: dia:Dtpsy_0211 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004386201.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: oca:OCAR_5014 activator of HSP90 ATPase 1 family protein YP_004386202.1 PFAM: MaoC-like dehydratase; KEGG: dac:Daci_0013 dehydratase YP_004386203.1 KEGG: dac:Daci_0012 hypothetical protein YP_004386204.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0011 LysR family transcriptional regulator YP_004386205.1 KEGG: axy:AXYL_02637 CoA-transferase family III family protein 17; PFAM: CoA-transferase family III YP_004386206.1 KEGG: dia:Dtpsy_0212 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004386207.1 KEGG: ajs:Ajs_0194 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004386208.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0214 major facilitator superfamily MFS_1 YP_004386209.1 KEGG: dia:Dtpsy_0215 transcriptional regulator, AraC family; PFAM: Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004386210.1 PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0201 hypothetical protein YP_004386211.1 PFAM: Peptidase M48; KEGG: ajs:Ajs_0203 peptidase M48, Ste24p YP_004386212.1 KEGG: ajs:Ajs_0204 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004386213.1 KEGG: lch:Lcho_3364 putative sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Activator of aromatic catabolism; Helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; SMART: ATPase, AAA+ type, core YP_004386214.1 PFAM: Phenol hydroxylase subunit; KEGG: avn:Avin_30760 multi-component phenol hydoxylase, assembly subunit; LapK YP_004386215.1 KEGG: azo:azo2443 phenol hydroxylase subunit P1; PFAM: Methane/phenol/toluene hydroxylase YP_004386216.1 PFAM: Monooxygenase component MmoB/DmpM; KEGG: azo:azo2442 phenol hydrolase subunit P2 YP_004386217.1 KEGG: azo:azo2441 phenol hydroxylase subunit P3; PFAM: Methane/phenol/toluene hydroxylase; YHS YP_004386218.1 PFAM: Phenol hydroxylase,conserved region; KEGG: rpf:Rpic12D_3551 phenol hydroxylase conserved region YP_004386219.1 KEGG: azo:azo1850 phenol 2-monooxygenase; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin YP_004386220.1 PFAM: Ferredoxin; KEGG: ajs:Ajs_0217 ferredoxin YP_004386221.1 TIGRFAM: Catechol 2,3 dioxygenase; KEGG: ajs:Ajs_0218 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004386222.1 PFAM: Domain of unknown function DUF336; KEGG: ajs:Ajs_0219 hypothetical protein YP_004386223.1 KEGG: ctt:CtCNB1_3154 ZorfX YP_004386224.1 TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; KEGG: ajs:Ajs_0220 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004386225.1 KEGG: ctt:CtCNB1_3150 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1 YP_004386226.1 TIGRFAM: 2-oxopent-4-enoate hydratase; KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004386227.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Acetaldehyde dehydrogenase; KEGG: ajs:Ajs_0223 acetaldehyde dehydrogenase; PFAM: Acetaldehyde dehydrogenase, C-terminal; Semialdehyde dehydrogenase, NAD-binding YP_004386228.1 TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; KEGG: ajs:Ajs_0224 4-hydroxy-2-ketovalerate aldolase; PFAM: Pyruvate carboxyltransferase; DmpG-like communication YP_004386229.1 TIGRFAM: 4-oxalocrotonate decarboxylase; KEGG: ajs:Ajs_0225 4-oxalocrotonate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004386230.1 KEGG: ctt:CtCNB1_3145 twin-arginine translocation pathway signal YP_004386231.1 KEGG: ajs:Ajs_0227 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase, bacteria/archaea; PFAM: 4-oxalocrotonate tautomerase YP_004386232.1 KEGG: ajs:Ajs_0228 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like YP_004386233.1 KEGG: dac:Daci_4281 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004386234.1 KEGG: dac:Daci_4280 hypothetical protein YP_004386235.1 PFAM: Amidohydrolase 2; KEGG: dac:Daci_4279 amidohydrolase 2 YP_004386236.1 KEGG: dac:Daci_4278 hypothetical protein YP_004386237.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4277 dimethylmenaquinone methyltransferase YP_004386238.1 KEGG: vap:Vapar_5586 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004386239.1 KEGG: vap:Vapar_3894 hypothetical protein YP_004386240.1 KEGG: dac:Daci_4274 hypothetical protein YP_004386241.1 PFAM: Amidohydrolase 2; KEGG: dac:Daci_4273 amidohydrolase 2 YP_004386242.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain-containing protein YP_004386243.1 KEGG: rme:Rmet_4433 extra-cytoplasmic solute receptor YP_004386244.1 KEGG: vei:Veis_2089 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004386245.1 KEGG: vei:Veis_2088 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004386246.1 KEGG: rme:Rmet_4432 IclR family transcriptional regulator family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004386247.1 KEGG: axy:AXYL_03188 hypothetical protein YP_004386248.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: axy:AXYL_03189 alpha/beta hydrolase fold family protein 10 YP_004386249.1 PFAM: Extracellular ligand-binding receptor; KEGG: bav:BAV0983 ABC transporter, substrate-binding protein YP_004386250.1 PFAM: ABC transporter permease; KEGG: bav:BAV0982 ABC transporter, permease protein YP_004386251.1 PFAM: ABC transporter permease; KEGG: dma:DMR_11370 ABC transporter permease protein YP_004386252.1 PFAM: ABC transporter-like; KEGG: pth:PTH_2348 ABC-type branched-chain amino acid transport systems, ATPase component; SMART: ATPase, AAA+ type, core YP_004386253.1 PFAM: ABC transporter-like; KEGG: oan:Oant_4420 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386254.1 PFAM: Amidohydrolase 2; KEGG: bbr:BB2353 hypothetical protein YP_004386255.1 KEGG: ajs:Ajs_0229 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004386256.1 KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004386257.1 KEGG: dia:Dtpsy_0225 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004386258.1 PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase YP_004386259.1 TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: dia:Dtpsy_0227 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_004386260.1 TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: dia:Dtpsy_0228 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004386261.1 KEGG: dia:Dtpsy_0229 hypothetical protein YP_004386262.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; KEGG: dac:Daci_0351 glutamyl-tRNA(Gln) amidotransferase subunit B; SMART: Asn/Gln amidotransferase YP_004386263.1 PFAM: Amidase; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: ajs:Ajs_0237 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_004386264.1 KEGG: aav:Aave_0293 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit YP_004386265.1 KEGG: dia:Dtpsy_0233 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_004386266.1 KEGG: ajs:Ajs_0240 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC YP_004386267.1 KEGG: ajs:Ajs_0241 putative rod shape-determining MreD transmembrane protein; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD YP_004386268.1 TIGRFAM: Penicillin-binding protein 2; KEGG: dia:Dtpsy_0236 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004386269.1 TIGRFAM: Arginase, subgroup; KEGG: dia:Dtpsy_0241 arginase; PFAM: Ureohydrolase YP_004386270.1 PFAM: Protein of unknown function DUF81; KEGG: aav:Aave_0304 hypothetical protein YP_004386271.1 KEGG: ajs:Ajs_0249 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004386272.1 KEGG: ajs:Ajs_0250 hypothetical protein; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140 YP_004386273.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_0251 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386274.1 PFAM: Mammalian cell entry-related; KEGG: dia:Dtpsy_0246 mammalian cell entry related domain protein YP_004386275.1 KEGG: ajs:Ajs_0253 putative lipoprotein; manually curated; PFAM: Protein of unknown function DUF330 YP_004386276.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bph:Bphy_6198 LysR family transcriptional regulator YP_004386277.1 PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; KEGG: cti:RALTA_B0856 putative hydrolyase YP_004386278.1 KEGG: cti:RALTA_B0858 conserved hypothetical protein; UPF0065 YP_004386279.1 KEGG: mmi:MMAR_5403 ribonuclease activity regulator protein RraA; TIGRFAM: Ribonuclease E inhibitor RraA; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase YP_004386280.1 KEGG: dia:Dtpsy_0253 multiple antibiotic resistance (MarC)-related protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related YP_004386281.1 KEGG: dia:Dtpsy_0255 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase YP_004386282.1 KEGG: dia:Dtpsy_0256 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004386283.1 PFAM: Secretion protein HlyD; KEGG: ajs:Ajs_0262 secretion protein HlyD family protein YP_004386284.1 KEGG: dia:Dtpsy_0258 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004386285.1 KEGG: ajs:Ajs_0264 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004386286.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: dia:Dtpsy_0260 Mg2 transporter protein CorA family protein YP_004386287.1 KEGG: ajs:Ajs_0266 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase YP_004386288.1 PFAM: Biotin/lipoate A/B protein ligase; KEGG: dia:Dtpsy_0262 biotin/lipoate A/B protein ligase YP_004386289.1 PFAM: Uncharacterised protein family UPF0093; KEGG: dia:Dtpsy_0263 hypothetical protein YP_004386290.1 PFAM: VanZ-like; KEGG: ajs:Ajs_0269 VanZ family protein YP_004386291.1 KEGG: dia:Dtpsy_0265 ferredoxin-like protein YP_004386292.1 KEGG: dia:Dtpsy_0266 putative transmembrane protein YP_004386293.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: ajs:Ajs_0272 penicillin-binding protein 6; SMART: Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YP_004386294.1 KEGG: dia:Dtpsy_0268 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacteria; PFAM: Ribosomal protein S12/S23 YP_004386295.1 KEGG: xtr:100494042 30S ribosomal protein S7-like; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7 YP_004386296.1 TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: ajs:Ajs_0275 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004386297.1 KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, C-terminal; Translation elongation factor EFTu/EF1A, domain 2 YP_004386298.1 TIGRFAM: Ribosomal protein S10 subgroup; HAMAP: Ribosomal protein S10 subgroup; KEGG: vei:Veis_1263 30S ribosomal protein S10; PFAM: Ribosomal protein S10 YP_004386299.1 KEGG: dia:Dtpsy_0273 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3 YP_004386300.1 PFAM: Ribosomal protein L4/L1e; KEGG: dia:Dtpsy_0274 50S ribosomal protein L4 YP_004386301.1 PFAM: Ribosomal protein L25/L23; KEGG: dia:Dtpsy_0275 50S ribosomal protein L23 YP_004386302.1 KEGG: dia:Dtpsy_0276 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain YP_004386303.1 KEGG: xtr:100486557 30S ribosomal protein S19-like; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15 YP_004386304.1 KEGG: dac:Daci_0396 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17 YP_004386305.1 TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: aav:Aave_0344 30S ribosomal protein S3; SMART: K Homology YP_004386306.1 KEGG: dia:Dtpsy_0280 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_004386307.1 KEGG: dia:Dtpsy_0281 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29 YP_004386308.1 KEGG: dia:Dtpsy_0282 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17 YP_004386309.1 PFAM: Redoxin; KEGG: ajs:Ajs_0288 redoxin domain-containing protein YP_004386310.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dia:Dtpsy_0284 GCN5-related N-acetyltransferase YP_004386311.1 KEGG: dia:Dtpsy_0285 cytochrome b561 YP_004386312.1 PFAM: Redoxin; KEGG: dia:Dtpsy_0287 redoxin domain protein YP_004386313.1 KEGG: dia:Dtpsy_0288 hypothetical protein YP_004386314.1 PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: ajs:Ajs_0295 PTS system fructose subfamily IIA component YP_004386315.1 KEGG: dia:Dtpsy_0291 phosphocarrier, HPr family; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein YP_004386316.1 TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: ajs:Ajs_0297 phosphoenolpyruvate--protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain YP_004386317.1 KEGG: dia:Dtpsy_0293 lipoyl synthase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB YP_004386318.1 TIGRFAM: Octanoyltransferase; KEGG: ajs:Ajs_0299 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase YP_004386319.1 PFAM: Protein of unknown function DUF493; KEGG: dia:Dtpsy_0295 protein of unknown function DUF493 YP_004386320.1 PFAM: ATPase, F0 complex, subunit I; KEGG: aav:Aave_0365 putative ATP synthase protein I YP_004386321.1 KEGG: dia:Dtpsy_0297 F0F1 ATP synthase subunit A; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATPase, F0 complex, subunit A YP_004386322.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: dac:Daci_0415 F0F1 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C YP_004386323.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: dia:Dtpsy_0299 F0F1 ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004386324.1 KEGG: dia:Dtpsy_0300 F0F1 ATP synthase subunit delta; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit YP_004386325.1 KEGG: aav:Aave_0370 F0F1 ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal YP_004386326.1 KEGG: dia:Dtpsy_0302 F0F1 ATP synthase subunit gamma; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit YP_004386327.1 TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: dia:Dtpsy_0303 F0F1 ATP synthase subunit beta; SMART: ATPase, AAA+ type, core YP_004386328.1 KEGG: dia:Dtpsy_0304 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal YP_004386329.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911 YP_004386330.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_004386331.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66 YP_004386332.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein YP_004386333.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein YP_004386334.1 PFAM: LemA; KEGG: aav:Aave_0381 LemA family protein YP_004386335.1 KEGG: dia:Dtpsy_0312 hypothetical protein YP_004386336.1 PFAM: Protein of unknown function DUF2944; KEGG: ajs:Ajs_0319 hypothetical protein YP_004386337.1 PFAM: Cytochrome c, class I; KEGG: aav:Aave_0385 cytochrome c, class I YP_004386338.1 KEGG: dia:Dtpsy_0316 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004386339.1 KEGG: dia:Dtpsy_0317 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004386340.1 KEGG: dia:Dtpsy_0318 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004386341.1 PFAM: Transcription regulator MAATS, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0319 transcriptional regulator, TetR family YP_004386342.1 KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, C-terminal; Translation elongation factor EFTu/EF1A, domain 2 YP_004386343.1 KEGG: ajs:Ajs_3903 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein SecE/Sec61-gamma protein YP_004386344.1 TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: dia:Dtpsy_3251 NusG antitermination factor; SMART: Transcription antitermination protein, NusG, N-terminal; KOW YP_004386345.1 TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal domain; Ribosomal protein L11, C-terminal domain; KEGG: aav:Aave_4535 50S ribosomal protein L11; SMART: Ribosomal protein L11 YP_004386346.1 KEGG: dia:Dtpsy_3249 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1 YP_004386347.1 KEGG: aav:Aave_4533 50S ribosomal protein L10; HAMAP: Ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0 YP_004386348.1 KEGG: dia:Dtpsy_3247 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal YP_004386349.1 KEGG: aav:Aave_4531 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 7; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain YP_004386350.1 TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 4; KEGG: dia:Dtpsy_3245 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase, N-terminal YP_004386351.1 PFAM: LemA; KEGG: dia:Dtpsy_3244 hypothetical protein YP_004386352.1 KEGG: dia:Dtpsy_3243 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p YP_004386353.1 KEGG: ajs:Ajs_3893 hypothetical protein YP_004386354.1 KEGG: ajs:Ajs_3892 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; HAMP linker domain YP_004386355.1 KEGG: dia:Dtpsy_3240 two component transcriptional regulator, fis family; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain YP_004386356.1 TIGRFAM: Phage head-tail joining protein; KEGG: aav:Aave_1622 phage head-tail adaptor, putative YP_004386357.1 PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region YP_004386358.1 PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein YP_004386359.1 TIGRFAM: Bacteriophage HK022, Gp6; KEGG: bcm:Bcenmc03_1290 phage protein DNA packaging protein YP_004386363.1 KEGG: pol:Bpro_0958 putative major phage head protein/prohead proteinase YP_004386365.1 KEGG: pol:Bpro_2970 hypothetical protein YP_004386366.1 KEGG: pol:Bpro_2969 hypothetical protein YP_004386367.1 KEGG: pol:Bpro_2968 hypothetical protein YP_004386368.1 KEGG: drt:Dret_1611 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory YP_004386371.1 PFAM: Integrase, catalytic core, phage; KEGG: dia:Dtpsy_3164 integrase family protein YP_004386372.1 KEGG: pol:Bpro_2745 putative transposase YP_004386373.1 KEGG: pol:Bpro_2744 hypothetical protein YP_004386374.1 KEGG: dia:Dtpsy_0401 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004386375.1 KEGG: dia:Dtpsy_0402 glycosyltransferase YP_004386376.1 PFAM: Glycosyl transferase, family 2; KEGG: ajs:Ajs_0411 glycosyl transferase family protein YP_004386377.1 KEGG: ajs:Ajs_0412 hypothetical protein YP_004386378.1 PFAM: Tetrapyrrole methylase; manually curated; TIGRFAM: Uncharacterised protein family UPF0011; KEGG: dia:Dtpsy_0405 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I YP_004386379.1 TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: dia:Dtpsy_0406 hypothetical protein; PFAM: Uncharacterised protein family UPF0102 YP_004386380.1 PFAM: Sugar isomerase (SIS); KEGG: dia:Dtpsy_0407 phosphoheptose isomerase YP_004386381.1 PFAM: Transport-associated; KEGG: ajs:Ajs_0416 transport-associated YP_004386382.1 KEGG: dia:Dtpsy_0409 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004386383.1 KEGG: ajs:Ajs_0418 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E YP_004386384.1 KEGG: dia:Dtpsy_0411 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain YP_004386385.1 KEGG: aav:Aave_0637 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E YP_004386386.1 KEGG: dac:Daci_1069 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal YP_004386387.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: dia:Dtpsy_0414 aminotransferase class V YP_004386388.1 manually curated; KEGG: aav:Aave_0642 hypothetical protein YP_004386389.1 PFAM: Protein of unknown function DUF445, transmembrane; KEGG: ajs:Ajs_0423 hypothetical protein YP_004386390.1 KEGG: dia:Dtpsy_0417 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_004386391.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0418 transcriptional regulator, LysR family YP_004386392.1 TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: xtr:100487869 formyltetrahydrofolate deformylase-like; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT YP_004386393.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; PAS fold-3; PAS fold-4; KEGG: ctt:CtCNB1_4372 diguanylate cyclase/phosphodiesterase with; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif YP_004386394.1 PFAM: Domain of unknown function DUF399; KEGG: dia:Dtpsy_0421 protein of unknown function DUF399 YP_004386395.1 TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: ajs:Ajs_0431 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal YP_004386396.1 KEGG: dia:Dtpsy_0423 GAF sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; HAMP linker domain; GAF; SMART: ATPase-like, ATP-binding domain; HAMP linker domain YP_004386397.1 KEGG: dia:Dtpsy_0424 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain YP_004386398.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_0434 major facilitator superfamily transporter YP_004386399.1 KEGG: xtr:100497879 nitrite extrusion protein 1-like; TIGRFAM: Nitrate transporter; PFAM: Major facilitator superfamily MFS-1 YP_004386400.1 SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Nitrate reductase, alpha subunit; KEGG: ajs:Ajs_0436 respiratory nitrate reductase alpha subunit apoprotein; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain YP_004386401.1 KEGG: dia:Dtpsy_0428 nitrate reductase, beta subunit; TIGRFAM: Nitrate reductase, beta subunit YP_004386402.1 TIGRFAM: Nitrate reductase chaperone, NarJ; KEGG: dia:Dtpsy_0429 nitrate reductase molybdenum cofactor assembly chaperone; PFAM: DMSO/Nitrate reductase chaperone YP_004386403.1 TIGRFAM: Nitrate reductase, gamma subunit; KEGG: dia:Dtpsy_0430 respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit YP_004386404.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_0431 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004386405.1 PFAM: Carbonic anhydrase; KEGG: dia:Dtpsy_0432 carbonate dehydratase; SMART: Carbonic anhydrase YP_004386406.1 PFAM: Nitroreductase-like; KEGG: dia:Dtpsy_0434 nitroreductase YP_004386407.1 KEGG: dia:Dtpsy_0435 hypothetical protein YP_004386408.1 KEGG: dia:Dtpsy_0436 hemerythrin HHE cation binding domain protein YP_004386409.1 PFAM: Protein of unknown function DUF3567; KEGG: ajs:Ajs_0446 hypothetical protein YP_004386410.1 KEGG: ajs:Ajs_0447 hypothetical protein YP_004386411.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: ajs:Ajs_0449 fumarylacetoacetate (FAA) hydrolase YP_004386412.1 KEGG: cph:Cpha266_1840 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat YP_004386413.1 PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: ajs:Ajs_0451 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain YP_004386414.1 KEGG: vei:Veis_1579 hypothetical protein YP_004386415.1 KEGG: vei:Veis_1580 citryl-CoA lyase; PFAM: Aldehyde-lyase domain YP_004386416.1 KEGG: vei:Veis_1581 formyl-CoA transferase; PFAM: CoA-transferase family III YP_004386417.1 KEGG: cti:RALTA_B1741 hypothetical protein YP_004386418.1 KEGG: cti:RALTA_B1742 putative acyl CoA dehydrogenase oxidoreductase protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004386419.1 PFAM: MaoC-like dehydratase; KEGG: cti:RALTA_B1743 hypothetical protein YP_004386420.1 PFAM: MmgE/PrpD; KEGG: vei:Veis_1585 MmgE/PrpD family protein YP_004386421.1 KEGG: xau:Xaut_1974 citryl-CoA lyase; PFAM: Aldehyde-lyase domain YP_004386422.1 PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; KEGG: rcu:RCOM_0002820 Transcriptional regulator kdgR, putative YP_004386423.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: dia:Dtpsy_0444 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004386424.1 PFAM: Acyl-CoA-binding protein, ACBP; KEGG: dia:Dtpsy_0446 acyl-coA-binding protein ACBP YP_004386425.1 PFAM: aminopeptidase; KEGG: dia:Dtpsy_0447 putative zinc protease protein YP_004386426.1 KEGG: ajs:Ajs_0457 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase YP_004386427.1 KEGG: dia:Dtpsy_0450 hypothetical protein YP_004386428.1 KEGG: ajs:Ajs_0460 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase YP_004386429.1 PFAM: Protein of unknown function DUF1840; KEGG: dia:Dtpsy_0452 hypothetical protein YP_004386430.1 KEGG: ajs:Ajs_0462 hypothetical protein YP_004386431.1 KEGG: vap:Vapar_5015 hypothetical protein YP_004386432.1 PFAM: AMP-dependent synthetase/ligase; KEGG: dia:Dtpsy_0455 putative phenylacetate-CoA ligase YP_004386433.1 KEGG: ctt:CtCNB1_4329 high-affinity branched-chain amino acid transport ATP-binding protein LivF; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004386434.1 KEGG: dac:Daci_1155 hypothetical protein YP_004386435.1 PFAM: ABC transporter permease; KEGG: ctt:CtCNB1_4327 membrane protein YP_004386436.1 PFAM: ABC transporter permease; KEGG: ctt:CtCNB1_4326 high-affinity branched-chain amino acidtransport system permease protein LivH YP_004386437.1 PFAM: ABC transporter-like; KEGG: dac:Daci_1158 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004386438.1 KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004386439.1 KEGG: dia:Dtpsy_0462 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan binding-like; SMART: ATPase, AAA+ type, core YP_004386440.1 KEGG: ajs:Ajs_0472 hypothetical protein YP_004386441.1 KEGG: ajs:Ajs_0473 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain YP_004386442.1 TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: ajs:Ajs_0474 RNA-binding S4 domain-containing protein; SMART: RNA-binding S4 YP_004386443.1 KEGG: dia:Dtpsy_0466 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004386444.1 KEGG: dac:Daci_1191 hypothetical protein YP_004386445.1 KEGG: dia:Dtpsy_0467 hypothetical protein YP_004386446.1 PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0479 serine/threonine protein kinase YP_004386447.1 PFAM: Serine/threonine-protein kinase-like domain; UspA; KEGG: dia:Dtpsy_0471 serine/threonine protein kinase YP_004386448.1 PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_0472 metallophosphoesterase YP_004386449.1 KEGG: ajs:Ajs_0058 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004386450.1 KEGG: ctt:CtCNB1_2196 hypothetical protein YP_004386451.1 TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: dia:Dtpsy_0475 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain YP_004386452.1 TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; KEGG: aav:Aave_4269 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004386453.1 KEGG: aav:Aave_4268 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004386454.1 PFAM: Amidohydrolase 2; KEGG: aav:Aave_4267 amidohydrolase 2 YP_004386455.1 PFAM: Endoribonuclease L-PSP; KEGG: aav:Aave_4266 endoribonuclease L-PSP YP_004386456.1 KEGG: aav:Aave_4265 hypothetical protein YP_004386457.1 KEGG: aav:Aave_4263 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding YP_004386458.1 KEGG: aav:Aave_4262 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004386459.1 KEGG: ajs:Ajs_3718 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004386460.1 KEGG: dia:Dtpsy_0477 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004386461.1 KEGG: ajs:Ajs_3712 ABC transporter; TIGRFAM: ABC-2 type transporter, NodJ; PFAM: ABC-2 type transporter YP_004386462.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_3711 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386463.1 PFAM: Tannase/feruloyl esterase; KEGG: reu:Reut_A1509 tannase and feruloyl esterase YP_004386464.1 TIGRFAM: AMP nucleosidase; KEGG: aav:Aave_4246 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase, N-terminal; Nucleoside phosphorylase domain YP_004386465.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; PAS fold-3; KEGG: dia:Dtpsy_0486 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS YP_004386466.1 KEGG: ajs:Ajs_3707 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004386467.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dia:Dtpsy_0488 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004386468.1 PFAM: Protein of unknown function DUF81; KEGG: dia:Dtpsy_0490 protein of unknown function DUF81 YP_004386469.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_1220 LysR family transcriptional regulator YP_004386470.1 KEGG: dac:Daci_1221 hypothetical protein YP_004386471.1 KEGG: dac:Daci_1222 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004386472.1 KEGG: dac:Daci_1223 quinone oxidoreductase; TIGRFAM: Quinone oxidoreductase putative, YhdH/YhfP; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like YP_004386473.1 KEGG: reh:H16_B1709 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004386474.1 TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: ajs:Ajs_3702 hypothetical protein; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted YP_004386475.1 PFAM: PhoH-like protein; KEGG: dia:Dtpsy_0492 PhoH family protein YP_004386476.1 TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; KEGG: dia:Dtpsy_0493 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding motif, class 1 YP_004386477.1 KEGG: dia:Dtpsy_0494 endoproteinase Arg-C YP_004386478.1 KEGG: ajs:Ajs_3698 DnaK-related protein YP_004386479.1 KEGG: dac:Daci_5720 putative heat-shock chaperone protein YP_004386480.1 KEGG: dac:Daci_5721 hypothetical protein YP_004386481.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: dia:Dtpsy_0499 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal YP_004386482.1 PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter YP_004386484.1 KEGG: ctt:CtCNB1_4283 hypothetical protein YP_004386485.1 PFAM: Alanine racemase, N-terminal; KEGG: dia:Dtpsy_0501 alanine racemase domain protein YP_004386486.1 KEGG: dia:Dtpsy_0502 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004386487.1 KEGG: dia:Dtpsy_0504 hypothetical protein YP_004386488.1 KEGG: dia:Dtpsy_0505 PP-loop domain protein; HAMAP: 2-thiocytidine tRNA biosynthesis protein, TtcA; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase YP_004386489.1 TIGRFAM: Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; KEGG: dia:Dtpsy_0506 dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase YP_004386490.1 KEGG: dia:Dtpsy_0507 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase YP_004386491.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bge:BC1002_2951 short-chain dehydrogenase/reductase SDR YP_004386492.1 PFAM: Protein of unknown function DUF185; KEGG: dia:Dtpsy_0510 protein of unknown function DUF185 YP_004386493.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4030 hypothetical protein YP_004386494.1 KEGG: dia:Dtpsy_0515 hypothetical protein YP_004386495.1 PFAM: ROK; KEGG: ajs:Ajs_0500 glucokinase YP_004386496.1 KEGG: ajs:Ajs_0501 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: Glycosyl transferase, family 20 YP_004386497.1 PFAM: Glycoside hydrolase 15-related; KEGG: ajs:Ajs_0502 glycoside hydrolase 15-related YP_004386498.1 KEGG: dia:Dtpsy_0519 trehalose-phosphatase; TIGRFAM: Trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Trehalose-phosphatase YP_004386499.1 TIGRFAM: Thioredoxin; Zinc finger/thioredoxin putative; KEGG: dia:Dtpsy_0520 thioredoxin; PFAM: Thioredoxin domain YP_004386500.1 HAMAP: tRNA nucleotidyltransferase, proteobacteria; KEGG: dia:Dtpsy_0521 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain YP_004386501.1 KEGG: axy:AXYL_01756 acetoacetate metabolism regulatory protein AtoC; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004386502.1 KEGG: vei:Veis_3993 hypothetical protein YP_004386503.1 KEGG: axy:AXYL_01758 hypothetical protein YP_004386504.1 KEGG: vei:Veis_3991 hypothetical protein YP_004386505.1 PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_0522 metallophosphoesterase YP_004386506.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: ajs:Ajs_0507 glutathione S-transferase domain-containing protein YP_004386507.1 KEGG: dia:Dtpsy_0524 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004386508.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: dia:Dtpsy_0525 lytic transglycosylase catalytic YP_004386509.1 KEGG: ajs:Ajs_0510 cytochrome b561 YP_004386510.1 KEGG: dia:Dtpsy_0527 putative signal peptide protein YP_004386511.1 HAMAP: PKHD-type hydroxylase ybiX; PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ajs:Ajs_0512 putative hydroxylase; SMART: Prolyl 4-hydroxylase, alpha subunit YP_004386512.1 KEGG: ajs:Ajs_0513 (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent dehydrogenase YP_004386513.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: ajs:Ajs_0514 TonB-dependent receptor YP_004386514.1 KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like YP_004386515.1 KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004386516.1 KEGG: dia:Dtpsy_0533 PGAP1 family protein YP_004386517.1 PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: dia:Dtpsy_0542 beta-ketoacyl synthase; SMART: Polyketide synthase, beta-ketoacyl synthase domain YP_004386518.1 TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: dia:Dtpsy_0541 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_004386519.1 KEGG: ajs:Ajs_0524 apolipoprotein N-acyltransferase; TIGRFAM: Apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004386520.1 PFAM: Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: ajs:Ajs_0523 CBS domain-containing protein YP_004386521.1 KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004386522.1 KEGG: dia:Dtpsy_0537 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type YP_004386523.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: ajs:Ajs_0520 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004386524.1 TIGRFAM: Phenylalanine-4-hydroxylase, monomeric form; KEGG: dia:Dtpsy_0534 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase, C-terminal YP_004386525.1 KEGG: pol:Bpro_0273 branched-chain alpha-keto acid dehydrogenase E1 component; PFAM: Dehydrogenase, E1 component; 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal YP_004386526.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: pol:Bpro_0274 branched-chain alpha-keto acid dehydrogenase E1 component; SMART: Transketolase-like, pyrimidine-binding domain YP_004386527.1 KEGG: axy:AXYL_02631 lipoamide acyltransferase component of branched-chain alpha-keto aciddehydrogenase complex; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004386528.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: axy:AXYL_02632 dihydrolipoyl dehydrogenase 2; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region YP_004386529.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: dac:Daci_1288 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit YP_004386530.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, beta subunit; KEGG: ajs:Ajs_0528 glycine--tRNA ligase YP_004386531.1 TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; KEGG: dia:Dtpsy_0545 histidinol-phosphate phosphatase family protein YP_004386532.1 KEGG: ajs:Ajs_0530 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004386533.1 PFAM: Protein of unknown function DUF45; KEGG: dia:Dtpsy_0547 protein of unknown function DUF45 YP_004386534.1 SMART: Rhodanese-like; KEGG: ajs:Ajs_0532 rhodanese domain-containing protein YP_004386535.1 KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM; PFAM: Transport-associated; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004386536.1 KEGG: dia:Dtpsy_0550 pantothenate kinase; TIGRFAM: Type III pantothenate kinase; PFAM: Type III pantothenate kinase YP_004386537.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0551 transcriptional regulator, TetR family YP_004386538.1 KEGG: dia:Dtpsy_0552 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: Poly granule associated; PFAM: Poly granule associated YP_004386539.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004386540.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: ajs:Ajs_0538 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004386541.1 TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: bvi:Bcep1808_3215 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_004386542.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: dia:Dtpsy_0556 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related YP_004386543.1 PFAM: Domain of unknown function DUF1972; Glycosyl transferase, group 1; KEGG: gme:Gmet_2169 glycosyltransferase-like protein YP_004386544.1 KEGG: ajs:Ajs_0541 rhamnosyltransferase; TIGRFAM: Rhamnosyltransferase; PFAM: Glycosyl transferase, family 2 YP_004386545.1 PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: vei:Veis_0688 general secretory pathway protein E YP_004386546.1 PFAM: Type II secretion system F domain; KEGG: eba:ebA1619 general secretion pathway protein F YP_004386547.1 KEGG: aav:Aave_4158 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal YP_004386548.1 KEGG: dac:Daci_1302 general secretion pathway protein H YP_004386549.1 KEGG: aav:Aave_4156 general secretion pathway protein I YP_004386550.1 KEGG: vei:Veis_0683 general secretion pathway protein J YP_004386551.1 KEGG: eba:ebA1612 general secretory pathway protein K YP_004386552.1 PFAM: Fimbrial assembly; KEGG: aav:Aave_4153 fimbrial assembly family protein YP_004386553.1 PFAM: General secretion pathway protein M; KEGG: vei:Veis_0680 general secretion pathway protein M YP_004386555.1 KEGG: pol:Bpro_2744 hypothetical protein YP_004386556.1 KEGG: pol:Bpro_2745 putative transposase YP_004386557.1 PFAM: Glycosyl transferase, group 1; KEGG: dbr:Deba_0993 glycosyl transferase group 1 YP_004386558.1 PFAM: ABC-2 type transporter; KEGG: mag:amb1063 ABC-type polysaccharide/polyol phosphate export systems YP_004386559.1 PFAM: ABC transporter-like; KEGG: vei:Veis_0673 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386561.1 PFAM: Methyltransferase type 11; KEGG: azl:AZL_f01750 hypothetical protein YP_004386562.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: rso:RSc0977 putative transglycosylase signal peptide protein YP_004386563.1 PFAM: Glycosyl transferase, family 4; KEGG: vei:Veis_1227 glycosyl transferase family protein YP_004386564.1 TIGRFAM: Acetylglutamate kinase; KEGG: ajs:Ajs_0588 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_004386565.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_0589 nucleoid occlusion protein YP_004386566.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0570 transcriptional regulator, TetR family YP_004386567.1 KEGG: dia:Dtpsy_0571 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004386568.1 KEGG: dia:Dtpsy_0572 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2147 YP_004386569.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG: dac:Daci_1339 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_004386570.1 TIGRFAM: Thiolase; KEGG: xtr:100490800 3-ketoacyl-CoA thiolase-like; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004386571.1 KEGG: dia:Dtpsy_0576 hypothetical protein YP_004386572.1 PFAM: Crotonase, core; KEGG: dia:Dtpsy_0577 enoyl-CoA hydratase YP_004386573.1 PFAM: Protein of unknown function DUF583; KEGG: dia:Dtpsy_0579 protein of unknown function DUF583 YP_004386574.1 PFAM: Thioesterase superfamily; KEGG: ajs:Ajs_0601 thioesterase superfamily protein YP_004386575.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: ajs:Ajs_0602 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386576.1 PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core; KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase YP_004386577.1 KEGG: ajs:Ajs_0604 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004386578.1 KEGG: ajs:Ajs_0605 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004386579.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ajs:Ajs_0606 tripartite ATP-independent periplasmic transporter DctQ YP_004386580.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0586 transcriptional regulator, LysR family YP_004386581.1 KEGG: dia:Dtpsy_0588 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004386582.1 KEGG: dia:Dtpsy_0589 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004386583.1 KEGG: ctt:CtCNB1_4180 glutamate/aspartate transport systempermease protein GltK; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004386584.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0591 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386585.1 KEGG: dia:Dtpsy_0592 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin YP_004386586.1 KEGG: ajs:Ajs_0616 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004386587.1 KEGG: xtr:100494427 peptide chain release factor 3-like; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2 YP_004386588.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0646 short-chain dehydrogenase/reductase SDR YP_004386589.1 TIGRFAM: Adenosylhomocysteinase; KEGG: dia:Dtpsy_0597 S-adenosyl-L-homocysteine hydrolase; PFAM: Adenosylhomocysteinase; S-adenosyl-L-homocysteine hydrolase, NAD binding YP_004386590.1 PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_0619 ribosomal RNA methyltransferase RrmJ/FtsJ YP_004386591.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dia:Dtpsy_0599 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase YP_004386592.1 manually curated; TIGRFAM: Rare lipoprotein A, bacterial; KEGG: dia:Dtpsy_0601 rare lipoprotein A; PFAM: Barwin-related endoglucanase YP_004386593.1 PFAM: Protein of unknown function DUF519; KEGG: dia:Dtpsy_0602 protein of unknown function DUF519 YP_004386594.1 KEGG: ajs:Ajs_0624 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain YP_004386595.1 KEGG: xtr:100489998 50S ribosomal protein L13-like; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13 YP_004386596.1 PFAM: Ribosomal protein S9; KEGG: xtr:100487283 30S ribosomal protein S9-like YP_004386597.1 KEGG: dia:Dtpsy_0608 iron-sulfur cluster insertion protein ErpA; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004386598.1 manually curated; HAMAP: Anhydro-N-acetylmuramic acid kinase; KEGG: dia:Dtpsy_0609 anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase YP_004386599.1 PFAM: Peptidase M23; KEGG: ajs:Ajs_0631 peptidase M23B YP_004386600.1 KEGG: ajs:Ajs_0632 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; manually curated; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; SMART: RNA-binding S4 YP_004386601.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0634 LysR family transcriptional regulator YP_004386602.1 TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: ajs:Ajs_0636 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat YP_004386603.1 KEGG: ajs:Ajs_0637 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004386604.1 KEGG: dia:Dtpsy_0617 MerR family transcriptional regulator YP_004386605.1 KEGG: dia:Dtpsy_0618 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004386606.1 KEGG: ajs:Ajs_0640 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type YP_004386607.1 PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: dia:Dtpsy_0620 glucosamine--fructose-6-phosphate aminotransferase YP_004386608.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004386609.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10 YP_004386610.1 KEGG: ajs:Ajs_2916 transposase IS66 YP_004386611.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_004386612.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911 YP_004386613.1 KEGG: ctt:CtCNB1_4017 hypothetical protein YP_004386614.1 PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: ctt:CtCNB1_4018 oxidoreductase, molybdopterin binding protein YP_004386615.1 KEGG: ctt:CtCNB1_4019 putative transmembrane hydrogenase cytochrome YP_004386616.1 KEGG: pol:Bpro_0543 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004386617.1 KEGG: vap:Vapar_2987 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004386619.1 TIGRFAM: PEP-CTERM anchor; PFAM: von Willebrand factor, type A; PEP-CTERM bacterial; KEGG: cja:CJA_0975 von Willebrand factor type A domain protein; SMART: von Willebrand factor, type A YP_004386620.1 TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: rfr:Rfer_0711 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase YP_004386621.1 KEGG: rfr:Rfer_0658 polysaccharide export protein; TIGRFAM: PEP-CTERM, putative polysaccharide export protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain YP_004386622.1 manually curated; TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis; PFAM: Lipopolysaccharide biosynthesis YP_004386623.1 manually curated; KEGG: app:CAP2UW1_1413 non-specific protein-tyrosine kinase YP_004386624.1 TIGRFAM: Conserved hypothetical protein CHP03016, PEP-CTERM; KEGG: rfr:Rfer_0661 hypothetical protein YP_004386625.1 KEGG: rfr:Rfer_0662 ATPase; TIGRFAM: ATPase, secretion system, PEP-CTERM, predicted; SMART: ATPase, AAA+ type, core YP_004386626.1 KEGG: app:CAP2UW1_1417 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: PEP-CTERM locus, polysaccharide deactylase; PFAM: Polysaccharide deacetylase YP_004386627.1 KEGG: rfr:Rfer_0665 hypothetical protein; manually curated; TIGRFAM: PEP-CTERM system-associated, FemAB-related YP_004386628.1 KEGG: dar:Daro_2405 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp1; PFAM: Glycosyl transferase, group 1 YP_004386629.1 KEGG: rfr:Rfer_0666 hypothetical protein; TIGRFAM: Exosortase 1; Exosortase, EpsH; Methanolan biosynthesis EpsI; PFAM: Exosortase EpsH-related YP_004386630.1 TIGRFAM: Exosortase 1 system-associated amidotransferase 1; Asparagine synthase, glutamine-hydrolyzing; KEGG: rfr:Rfer_0669 asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_004386631.1 KEGG: rfr:Rfer_0668 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp2; PFAM: Glycosyl transferase, group 1 YP_004386632.1 PFAM: Glycosyl transferase, group 1; KEGG: rru:Rru_A3107 glycosyl transferase, group 1 YP_004386633.1 PFAM: Glycosyl transferase, group 1; KEGG: hse:Hsero_2751 glycosyltransferase 1 protein YP_004386634.1 KEGG: tmz:Tmz1t_3254 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein YP_004386636.1 TIGRFAM: Conserved hypothetical protein CHP03097, O-antigen ligase-related; KEGG: hse:Hsero_2764 O-antigen polymerase YP_004386637.1 PFAM: Polysaccharide deacetylase; KEGG: neu:NE0847 hypothetical protein YP_004386638.1 PFAM: Polysaccharide deacetylase; KEGG: tgr:Tgr7_2375 polysaccharide deacetylase YP_004386639.1 KEGG: psl:Psta_3837 hypothetical protein YP_004386640.1 PFAM: Glycosyl transferase, family 2; KEGG: tkm:TK90_2524 glycosyl transferase family 2 YP_004386641.1 PFAM: Polysaccharide biosynthesis protein; KEGG: nwa:Nwat_1744 polysaccharide biosynthesis protein YP_004386642.1 KEGG: pol:Bpro_3996 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004386643.1 manually curated; TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: reu:Reut_B5375 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004386644.1 KEGG: hse:Hsero_2760 hypothetical protein YP_004386645.1 manually curated; KEGG: hse:Hsero_2738 hypothetical protein YP_004386646.1 KEGG: cyt:cce_4547 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004386647.1 KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family protein; TIGRFAM: Hydrolase, ortholog 1, exosortase system type 1 associated; PFAM: Alpha/beta hydrolase fold-1 YP_004386648.1 TIGRFAM: Hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: app:CAP2UW1_4344 hydrolase, exosortase system type 1 associated YP_004386649.1 KEGG: rfr:Rfer_0698 hypothetical protein YP_004386650.1 TIGRFAM: Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; KEGG: app:CAP2UW1_1626 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase/ligase YP_004386651.1 TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; KEGG: rfr:Rfer_0700 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal YP_004386652.1 TIGRFAM: Signal transduction histidine kinase, PEP-CTERM system, putative; PFAM: ATPase-like, ATP-binding domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: rfr:Rfer_0703 periplasmic sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004386653.1 TIGRFAM: Signal transduction response regulator, PEP-CTERM system, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: rfr:Rfer_0704 two component, sigma54 specific, fis family transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004386654.1 KEGG: rfr:Rfer_0705 tetratricopeptide TPR_2; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein, putative; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; Tetratricopeptide TPR-1 YP_004386655.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: rfr:Rfer_0710 peptidase S1 and S6, chymotrypsin/Hap YP_004386656.1 KEGG: azo:azo0349 putative small multi-drug resistant family protein YP_004386657.1 PFAM: UbiA prenyltransferase; KEGG: azo:azo0348 hypothetical protein YP_004386658.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_4993 LysR family transcriptional regulator YP_004386659.1 KEGG: dac:Daci_4992 hypothetical protein YP_004386660.1 KEGG: ctt:CtCNB1_3962 hypothetical protein YP_004386661.1 TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: dia:Dtpsy_0625 translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type YP_004386662.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: dia:Dtpsy_0631 2OG-Fe(II) oxygenase YP_004386663.1 KEGG: ajs:Ajs_0653 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004386664.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; KEGG: ctt:CtCNB1_2425 FAD-binding oxidoreductase YP_004386665.1 KEGG: vap:Vapar_3422 hypothetical protein YP_004386666.1 PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; Peptidoglycan binding-like; KEGG: pph:Ppha_2260 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin YP_004386667.1 PFAM: DSBA-like thioredoxin domain; KEGG: ajs:Ajs_0654 DsbA oxidoreductase YP_004386668.1 PFAM: Uncharacterised protein family CreA; KEGG: dia:Dtpsy_0634 CreA family protein YP_004386669.1 TIGRFAM: Cyanophycin synthetase; KEGG: dia:Dtpsy_0635 cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; Mur ligase, C-terminal YP_004386670.1 TIGRFAM: Cyanophycin synthetase; KEGG: ctt:CtCNB1_0610 cyanophycin synthetase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding YP_004386671.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: dia:Dtpsy_0637 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386672.1 PFAM: Domain of unknown function DUF1854; KEGG: dia:Dtpsy_0638 hypothetical protein YP_004386673.1 KEGG: dia:Dtpsy_0639 hypothetical protein YP_004386674.1 TIGRFAM: Small GTP-binding protein; PFAM: Translation elongation factor EFG/EF2, domain IV; Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, C-terminal; KEGG: vap:Vapar_5542 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004386675.1 KEGG: vei:Veis_1630 5-nucleotidase; PFAM: 5-nucleotidase YP_004386676.1 KEGG: dia:Dtpsy_0642 general secretion pathway protein F; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain YP_004386677.1 KEGG: ajs:Ajs_0664 luciferase family protein; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_004386678.1 KEGG: ajs:Ajs_0665 hypothetical protein YP_004386679.1 TIGRFAM: Type II secretion system GspE; PFAM: Type II secretion system protein E; KEGG: dia:Dtpsy_0645 general secretory pathway protein E; SMART: ATPase, AAA+ type, core YP_004386680.1 KEGG: dia:Dtpsy_0646 general secretion pathway protein D; TIGRFAM: Type II secretion system GspD; PFAM: Type II/III secretion system; NolW-like YP_004386681.1 KEGG: ajs:Ajs_0668 putative general secretory pathway N transmembrane protein YP_004386682.1 PFAM: General secretion pathway M protein; KEGG: ajs:Ajs_0669 hypothetical protein YP_004386683.1 PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L YP_004386684.1 KEGG: ajs:Ajs_0671 general secretion pathway protein K YP_004386685.1 KEGG: ajs:Ajs_0672 hypothetical protein YP_004386686.1 KEGG: dia:Dtpsy_0652 general secretion pathway protein I; TIGRFAM: General secretion pathway protein I; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein I/J; Prepilin-type cleavage/methylation, N-terminal YP_004386687.1 KEGG: dia:Dtpsy_0653 general secretion pathway protein H; manually curated; TIGRFAM: Bacterial general secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal YP_004386688.1 KEGG: aav:Aave_0925 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal YP_004386689.1 KEGG: dia:Dtpsy_0655 hypothetical protein YP_004386690.1 KEGG: dia:Dtpsy_0656 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004386691.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; KEGG: dia:Dtpsy_0657 cobalamin-5-phosphate synthase CobS YP_004386692.1 KEGG: dia:Dtpsy_0658 threonine dehydratase; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal YP_004386693.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: dia:Dtpsy_0659 OsmC family protein YP_004386694.1 KEGG: dia:Dtpsy_0660 putative ubiquinone biosynthesis protein YP_004386695.1 KEGG: aav:Aave_0932 porin YP_004386696.1 PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_0662 porin gram-negative type YP_004386697.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0664 binding-protein-dependent transport systems inner membrane component YP_004386698.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: dia:Dtpsy_0665 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004386699.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0667 binding-protein-dependent transport systems inner membrane component YP_004386700.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0668 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like YP_004386701.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0669 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004386702.1 KEGG: dia:Dtpsy_0671 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP YP_004386703.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: ajs:Ajs_0694 RpiR family transcriptional regulator YP_004386704.1 KEGG: dia:Dtpsy_0674 transaldolase B; TIGRFAM: Transaldolase 1; PFAM: Transaldolase YP_004386705.1 KEGG: ajs:Ajs_0697 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI) YP_004386706.1 KEGG: aav:Aave_0945 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1 YP_004386707.1 KEGG: dac:Daci_5660 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10 YP_004386708.1 KEGG: ajs:Ajs_0701 cytidyltransferase-like protein; TIGRFAM: Cytidyltransferase-related; PFAM: NUDIX hydrolase domain; Cytidylyltransferase YP_004386709.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: dia:Dtpsy_0683 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal YP_004386710.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0706 lipid A biosynthesis acyltransferase YP_004386711.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0707 lipid A biosynthesis acyltransferase YP_004386712.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_1352 LysR family transcriptional regulator YP_004386713.1 KEGG: vei:Veis_1351 fis family transcriptional regulator YP_004386714.1 KEGG: cti:RALTA_B1946 conserved hypothetical protein UPF0065 YP_004386715.1 KEGG: vei:Veis_1349 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004386716.1 PFAM: Amidohydrolase 2; KEGG: bbt:BBta_3003 hypothetical protein YP_004386717.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: aav:Aave_0983 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related YP_004386718.1 PFAM: Cytochrome c, class I; KEGG: ajs:Ajs_0710 cytochrome c, class I YP_004386719.1 PFAM: Cytochrome c biogenesis protein; KEGG: dia:Dtpsy_0691 ResB family protein YP_004386720.1 KEGG: ajs:Ajs_0712 cytochrome c assembly protein; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein YP_004386721.1 PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: dia:Dtpsy_0693 putative sulfite oxidase subunit YedY YP_004386722.1 KEGG: dia:Dtpsy_0694 ferric reductase domain protein transmembrane component; HAMAP: Sulphoxide reductase heme-binding subunit YedZ; PFAM: Flavoprotein transmembrane component YP_004386723.1 KEGG: dia:Dtpsy_0695 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like YP_004386724.1 TIGRFAM: Diaminopimelate decarboxylase; KEGG: dia:Dtpsy_0696 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal YP_004386725.1 manually curated; KEGG: ajs:Ajs_0717 hypothetical protein YP_004386726.1 TIGRFAM: Frataxin-like; HAMAP: Frataxin-like; KEGG: ajs:Ajs_0728 frataxin family protein; PFAM: Frataxin-like YP_004386727.1 KEGG: dia:Dtpsy_0698 penicillin-binding protein, 1A family; TIGRFAM: Penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004386728.1 TIGRFAM: Type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM YP_004386729.1 PFAM: Fimbrial assembly; KEGG: ajs:Ajs_0731 fimbrial assembly family protein YP_004386730.1 KEGG: ajs:Ajs_0732 pilus assembly protein, PilO YP_004386731.1 PFAM: Pilus assembly protein PilP; KEGG: dia:Dtpsy_0702 pilus assembly protein PilP YP_004386732.1 TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ; SMART: Secretin/TonB, short N-terminal YP_004386733.1 PFAM: Putative Ig; KEGG: eba:ebA2288 hypothetical protein YP_004386734.1 PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase AroB, subgroup; KEGG: dia:Dtpsy_0704 3-dehydroquinate synthase YP_004386735.1 SMART: Metal-dependent phosphohydrolase, HD domain; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: ajs:Ajs_0736 deoxyguanosinetriphosphate triphosphohydrolase-like protein; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase, type 2; PFAM: Metal-dependent phosphohydrolase, HD subdomain YP_004386736.1 PFAM: Protein of unknown function DUF1415; KEGG: dia:Dtpsy_0706 protein of unknown function DUF1415 YP_004386737.1 KEGG: dia:Dtpsy_0707 hypothetical protein YP_004386738.1 TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: xtr:100496453 methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like; PFAM: Aldehyde dehydrogenase domain YP_004386739.1 KEGG: hse:Hsero_3068 branched-chain amino acid ABC transporter periplasmic protein YP_004386740.1 PFAM: Transposase IS200-like; KEGG: vap:Vapar_1151 protein of unknown function DUF1568 YP_004386741.1 KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal YP_004386742.1 TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1; KEGG: dia:Dtpsy_0710 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region YP_004386743.1 KEGG: ajs:Ajs_0743 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004386744.1 KEGG: ajs:Ajs_0744 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004386745.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0713 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386746.1 KEGG: vei:Veis_4017 hypothetical protein YP_004386747.1 HAMAP: Spermine synthase; KEGG: ajs:Ajs_0746 spermidine synthase; PFAM: Spermine synthase YP_004386748.1 KEGG: dia:Dtpsy_0715 S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal YP_004386749.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0716 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386750.1 KEGG: dia:Dtpsy_0717 protein of unknown function DUF140; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140 YP_004386751.1 PFAM: Mammalian cell entry-related; KEGG: dia:Dtpsy_0718 mammalian cell entry related domain protein YP_004386752.1 PFAM: VacJ-like lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein YP_004386753.1 PFAM: Toluene tolerance Ttg2; KEGG: dia:Dtpsy_0720 toluene tolerance family protein YP_004386754.1 KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS YP_004386755.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-4; KEGG: gpb:HDN1F_11000 hypothetical protein; SMART: Diguanylate cyclase, predicted; PAS; PAC motif YP_004386756.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0722 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386757.1 PFAM: ABC-2 type transporter; KEGG: aav:Aave_1020 ABC-2 type transporter YP_004386758.1 PFAM: BolA protein; KEGG: dia:Dtpsy_0724 BolA family protein YP_004386759.1 PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: ctt:CtCNB1_0710 UDP-N-acetylglucosamine YP_004386760.1 TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; KEGG: dia:Dtpsy_0726 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase, catalytic domain YP_004386761.1 TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; KEGG: aav:Aave_1024 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type YP_004386762.1 PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: dia:Dtpsy_0729 histidinol-phosphate aminotransferase YP_004386763.1 KEGG: dia:Dtpsy_0730 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase YP_004386764.1 KEGG: dia:Dtpsy_0731 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004386765.1 TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; KEGG: ajs:Ajs_0765 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis YP_004386766.1 PFAM: Spherulation-specific family 4; KEGG: ajs:Ajs_0766 hypothetical protein YP_004386767.1 KEGG: ajs:Ajs_0767 putative transmembrane protein YP_004386768.1 PFAM: Glycosyl transferase, group 1; KEGG: ajs:Ajs_0768 glycosyl transferase, group 1 YP_004386769.1 KEGG: ajs:Ajs_0769 putative transmembrane protein YP_004386770.1 KEGG: ajs:Ajs_0770 putative transmembrane protein YP_004386771.1 KEGG: ajs:Ajs_0771 putative lipoprotein YP_004386772.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0772 TPR repeat-containing protein YP_004386773.1 PFAM: TM1410 hypothetical-related protein; KEGG: ajs:Ajs_0773 polysaccharide deacetylase YP_004386774.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: ajs:Ajs_0774 UDP-galactose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004386775.1 TIGRFAM: Histidine biosynthesis, HisF; KEGG: dia:Dtpsy_0738 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis YP_004386776.1 KEGG: aav:Aave_1048 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase YP_004386777.1 KEGG: dia:Dtpsy_0740 phosphoribosyl-ATP pyrophosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like YP_004386778.1 KEGG: dia:Dtpsy_0741 putative transmembrane protein YP_004386779.1 PFAM: Patatin/Phospholipase A2-related; KEGG: ajs:Ajs_0779 patatin YP_004386780.1 KEGG: dia:Dtpsy_0743 histidine triad (HIT) protein YP_004386781.1 KEGG: ajs:Ajs_0781 twin arginine translocase protein A; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106 YP_004386782.1 KEGG: dia:Dtpsy_0745 sec-independent translocase; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106 YP_004386783.1 KEGG: dia:Dtpsy_0746 sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase YP_004386784.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF YP_004386785.1 KEGG: dia:Dtpsy_0749 protein of unknown function DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3 YP_004386786.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA YP_004386787.1 KEGG: dac:Daci_5504 large-conductance mechanosensitive channel; TIGRFAM: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel YP_004386788.1 TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal YP_004386789.1 PFAM: Cytochrome b/b6, C-terminal; Cytochrome b/b6, N-terminal; KEGG: dia:Dtpsy_0753 cytochrome b/b6 domain protein YP_004386790.1 KEGG: ajs:Ajs_0791 cytochrome c1; manually curated; PFAM: Cytochrome c1 YP_004386791.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_0755 glutathione S-transferase domain protein YP_004386792.1 PFAM: Stringent starvation protein B; KEGG: dia:Dtpsy_0756 stringent starvation protein B YP_004386793.1 KEGG: dia:Dtpsy_0757 hypothetical protein YP_004386794.1 SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; TIGRFAM: SecA protein; KEGG: dia:Dtpsy_0759 preprotein translocase subunit SecA; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SEC-C motif YP_004386795.1 PFAM: Arginine biosynthesis protein ArgJ; TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: ajs:Ajs_0797 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_004386796.1 KEGG: dia:Dtpsy_0761 protein of unknown function DUF815; PFAM: Domain of unknown function DUF815; SMART: ATPase, AAA+ type, core YP_004386797.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0762 NUDIX hydrolase YP_004386798.1 PFAM: Uncharacterised protein family, zinc-binding; KEGG: dia:Dtpsy_0763 protein of unknown function DUF329 YP_004386799.1 PFAM: Uncharacterised protein family UPF0289; KEGG: dia:Dtpsy_0764 hypothetical protein YP_004386800.1 TIGRFAM: Dephospho-CoA kinase; KEGG: ajs:Ajs_0802 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_004386801.1 KEGG: dia:Dtpsy_0766 prepilin peptidase; PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV YP_004386802.1 PFAM: Type II secretion system F domain; KEGG: ajs:Ajs_0804 type II secretion system protein YP_004386803.1 TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: ajs:Ajs_0805 type IV-A pilus assembly ATPase PilB; SMART: ATPase, AAA+ type, core YP_004386804.1 KEGG: ajs:Ajs_0807 phage integrase family protein; manually curated; PFAM: Integrase, catalytic core, phage YP_004386805.1 KEGG: vap:Vapar_5848 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004386806.1 PFAM: Protein of unknown function DUF1814; KEGG: vap:Vapar_5847 hypothetical protein YP_004386807.1 KEGG: tbd:Tbd_1344 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004386808.1 KEGG: pol:Bpro_0676 hypothetical protein YP_004386809.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004386810.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10 YP_004386811.1 KEGG: dac:Daci_4208 hypothetical protein YP_004386812.1 KEGG: ajs:Ajs_3614 phage integrase family protein YP_004386813.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004386814.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004386815.1 KEGG: ajs:Ajs_0840 dimethylallyltranstransferase; PFAM: Polyprenyl synthetase YP_004386816.1 TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: ajs:Ajs_0841 50S ribosomal protein L21; PFAM: Ribosomal protein L21 YP_004386817.1 TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: dia:Dtpsy_0771 50S ribosomal protein L27; PFAM: Ribosomal protein L27 YP_004386818.1 TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTP-binding protein Obg/CgtA; KEGG: ajs:Ajs_0843 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related YP_004386819.1 TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; KEGG: dia:Dtpsy_0773 gamma-glutamyl kinase; SMART: Pseudouridine synthase/archaeosine transglycosylase YP_004386820.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0774 dinucleoside polyphosphate hydrolase YP_004386821.1 TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase, class IIa, bacterial; KEGG: dia:Dtpsy_0775 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding YP_004386822.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_0847 lytic transglycosylase, catalytic YP_004386823.1 PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: dia:Dtpsy_0777 protein of unknown function DUF21 YP_004386824.1 KEGG: aav:Aave_3667 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004386825.1 KEGG: dia:Dtpsy_0778 glutaredoxin-like protein; TIGRFAM: Monothiol glutaredoxin-related; PFAM: Glutaredoxin YP_004386826.1 TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; KEGG: ajs:Ajs_0850 HemK family modification methylase; PFAM: Methyltransferase small YP_004386827.1 SMART: Peptide chain release factor; TIGRFAM: Peptide chain release factor 1; KEGG: ajs:Ajs_0851 peptide chain release factor 1; HAMAP: Peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor YP_004386828.1 KEGG: dia:Dtpsy_0781 glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004386829.1 KEGG: dia:Dtpsy_0782 hypothetical protein YP_004386830.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0783 transcriptional regulator, LysR family YP_004386831.1 KEGG: ajs:Ajs_0855 hypothetical protein YP_004386832.1 PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase YP_004386833.1 PFAM: Mechanosensitive ion channel MscS; Protein of unknown function DUF3772; KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel YP_004386834.1 KEGG: dia:Dtpsy_0787 glycerophosphodiester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase YP_004386835.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: ctt:CtCNB1_0786 sn-glycerol-3-phosphate transport ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004386836.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0789 binding-protein-dependent transport systems inner membrane component YP_004386837.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ctt:CtCNB1_0788 sn-glycerol-3-phosphate transport systempermease protein UgpA YP_004386838.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dia:Dtpsy_0791 extracellular solute-binding protein family 1 YP_004386839.1 KEGG: ajs:Ajs_0863 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; Amino acid-binding ACT; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004386840.1 PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich domain; KEGG: dia:Dtpsy_0793 FAD linked oxidase domain protein YP_004386841.1 PFAM: Histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein YP_004386842.1 PFAM: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal; KEGG: dia:Dtpsy_0795 protein of unknown function DUF971 YP_004386843.1 KEGG: dia:Dtpsy_0796 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_004386844.1 KEGG: dia:Dtpsy_0797 import inner membrane translocase subunit Tim44; PFAM: Membrane transporter, Tim44-related/Ribosomal protein L45; SMART: Membrane transporter, Tim44-related/Ribosomal protein L45 YP_004386845.1 KEGG: dia:Dtpsy_0798 hypothetical protein YP_004386846.1 KEGG: dia:Dtpsy_0799 putative ubiquinone biosynthesis protein UbiB; TIGRFAM: Probable ubiquinone biosynthesis protein UbiB; PFAM: ABC-1 YP_004386847.1 PFAM: Sodium/solute symporter; KEGG: dia:Dtpsy_0800 Na+/solute symporter YP_004386848.1 SMART: Regulatory protein, FmdB, putative; manually curated; TIGRFAM: Regulatory protein, FmdB, putative; KEGG: dia:Dtpsy_0801 regulatory protein, FmdB family; PFAM: Regulatory protein, FmdB, putative YP_004386849.1 PFAM: Protein of unknown function DUF502; KEGG: dia:Dtpsy_0802 protein of unknown function DUF502 YP_004386850.1 TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: dia:Dtpsy_0803 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain YP_004386851.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0805 NUDIX hydrolase YP_004386852.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dia:Dtpsy_0806 endonuclease/exonuclease/phosphatase YP_004386853.1 KEGG: dia:Dtpsy_0807 phospholipase D/transphosphatidylase YP_004386854.1 KEGG: dia:Dtpsy_0808 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase YP_004386855.1 PFAM: BLUF; KEGG: dia:Dtpsy_0809 BLUF domain protein YP_004386856.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_0810 protein of unknown function DUF6 transmembrane YP_004386857.1 KEGG: dar:Daro_2490 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004386858.1 KEGG: dar:Daro_2491 LuxR response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal YP_004386859.1 PFAM: Cytochrome c, class I; KEGG: azo:azo2669 cytochrome c family protein YP_004386860.1 KEGG: aav:Aave_3628 hypothetical protein YP_004386861.1 KEGG: dia:Dtpsy_0813 hypothetical protein YP_004386862.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0885 lysine exporter protein LysE/YggA YP_004386863.1 PFAM: Amidase; KEGG: dia:Dtpsy_0815 amidase YP_004386864.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dia:Dtpsy_0816 extracellular solute-binding protein family 5 YP_004386865.1 PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: dia:Dtpsy_0817 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004386866.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0818 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004386867.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0819 binding-protein-dependent transport systems inner membrane component YP_004386868.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0820 binding-protein-dependent transport systems inner membrane component YP_004386869.1 KEGG: dia:Dtpsy_0821 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004386870.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: dia:Dtpsy_0822 peptidyl-tRNA hydrolase YP_004386871.1 KEGG: dia:Dtpsy_0823 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: Ribosomal protein L25, long-form; PFAM: Ribosomal protein L25, short-form YP_004386872.1 TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: dia:Dtpsy_0824 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase YP_004386873.1 PFAM: GHMP kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: ajs:Ajs_0896 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_004386874.1 PFAM: Outer membrane lipoprotein LolB; KEGG: dia:Dtpsy_0826 putative lipoprotein YP_004386875.1 PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0898 TPR repeat-containing protein YP_004386876.1 SMART: DNA glycosylase/AP lyase, catalytic domain; TIGRFAM: DNA glycosylase/AP lyase; KEGG: ajs:Ajs_0899 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase YP_004386877.1 manually curated; KEGG: dia:Dtpsy_0829 hypothetical protein YP_004386878.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: dia:Dtpsy_0830 A/G-specific adenine glycosylase; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif YP_004386879.1 HAMAP: ATPase, P-loop-containing; KEGG: dia:Dtpsy_0831 hypothetical protein YP_004386880.1 KEGG: ajs:Ajs_0903 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC YP_004386881.1 HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: dia:Dtpsy_0833 NAD(+)/NADH kinase family protein; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted YP_004386882.1 TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; HAMAP: Winged helix-turn-helix transcription repressor, HrcA; KEGG: dia:Dtpsy_0847 heat-inducible transcription repressor; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal YP_004386883.1 PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; KEGG: gur:Gura_3600 N-6 DNA methylase YP_004386884.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004386885.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004386886.1 KEGG: dac:Daci_2707 outer membrane efflux protein YP_004386887.1 PFAM: Protein of unknown function DUF3240; KEGG: dac:Daci_2708 hypothetical protein YP_004386888.1 PFAM: Transposase, IS4-like; KEGG: bvi:Bcep1808_6138 transposase, IS4 family protein YP_004386889.1 KEGG: dac:Daci_2710 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004386890.1 manually curated; KEGG: dac:Daci_2711 cytochrome b561 YP_004386891.1 PFAM: Domain of unknown function DUF125, transmembrane; KEGG: dac:Daci_2712 hypothetical protein YP_004386892.1 manually curated; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: dac:Daci_2713 histidine kinase; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain YP_004386893.1 KEGG: dac:Daci_2714 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004386895.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: rpa:RPA3655 alcohol dehydrogenase YP_004386896.1 PFAM: Lactonase, 7-bladed beta propeller; KEGG: dac:Daci_4552 putative hemagglutinin-related protein YP_004386897.1 KEGG: dac:Daci_4553 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004386898.1 KEGG: dac:Daci_4554 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal YP_004386899.1 KEGG: dac:Daci_4555 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004386900.1 KEGG: vap:Vapar_6186 hypothetical protein YP_004386901.1 KEGG: dac:Daci_4557 hypothetical protein YP_004386902.1 PFAM: Divalent ion tolerance protein, CutA1; KEGG: dia:Dtpsy_2844 CutA1 divalent ion tolerance protein YP_004386903.1 KEGG: dac:Daci_3339 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004386904.1 KEGG: vap:Vapar_5678 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004386905.1 KEGG: dac:Daci_3341 hypothetical protein YP_004386906.1 KEGG: dac:Daci_3342 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase YP_004386907.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: aav:Aave_1392 LysR family transcriptional regulator YP_004386908.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: dia:Dtpsy_2843 signal recognition particle-docking protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core YP_004386909.1 KEGG: dia:Dtpsy_2842 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal YP_004386910.1 KEGG: dia:Dtpsy_2841 peptidase M16 domain protein; manually curated; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal YP_004386911.1 TIGRFAM: RNA methyltransferase, RsmD; KEGG: dia:Dtpsy_2840 methyltransferase; PFAM: RNA methyltransferase, RsmD YP_004386912.1 TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; KEGG: dia:Dtpsy_2839 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase YP_004386913.1 KEGG: dia:Dtpsy_2837 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria YP_004386914.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_2835 hypothetical protein YP_004386915.1 PFAM: Protein of unknown function DUF1328; KEGG: dia:Dtpsy_2834 hypothetical protein YP_004386916.1 KEGG: ajs:Ajs_3510 multi-sensor signal transduction histidine kinase; PFAM: CHASE3; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004386917.1 KEGG: dia:Dtpsy_2832 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal YP_004386918.1 KEGG: dia:Dtpsy_2831 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004386919.1 PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: ajs:Ajs_3507 UBA/ThiF-type NAD/FAD binding protein YP_004386920.1 TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: ajs:Ajs_3506 C-terminal processing peptidase-3; SMART: Peptidase S41; PDZ/DHR/GLGF YP_004386921.1 SMART: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; KEGG: ajs:Ajs_3505 phosphoglyceromutase; PFAM: Histidine phosphatase superfamily, clade-1 YP_004386922.1 KEGG: dia:Dtpsy_2827 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004386923.1 KEGG: dia:Dtpsy_2826 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin YP_004386924.1 KEGG: dia:Dtpsy_2825 preprotein translocase subunit SecB; TIGRFAM: Bacterial protein export chaperone SecB; PFAM: Bacterial protein export chaperone SecB YP_004386925.1 manually curated; HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; KEGG: xtr:100490244 glycerol-3-phosphate dehydrogenase [NAD(P)+]-like; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YP_004386926.1 KEGG: pna:Pnap_3576 hypothetical protein YP_004386927.1 KEGG: bpa:BPP0893 hypothetical protein YP_004386928.1 PFAM: Protein of unknown function DUF81; KEGG: bpa:BPP0894 hypothetical protein YP_004386929.1 PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: bbr:BB0988 hypothetical protein YP_004386930.1 KEGG: bpa:BPP0896 hypothetical protein YP_004386931.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bbr:BB0990 LysR family transcriptional regulator YP_004386932.1 KEGG: ajs:Ajs_3500 pantoate--beta-alanine ligase; TIGRFAM: Pantoate-beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_004386933.1 TIGRFAM: Ketopantoate hydroxymethyltransferase; KEGG: dia:Dtpsy_2822 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_004386934.1 TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: dia:Dtpsy_2821 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal YP_004386935.1 TIGRFAM: Quinolinate synthetase A; KEGG: dia:Dtpsy_2820 quinolinate synthetase; PFAM: Quinolinate synthetase A YP_004386936.1 TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: ajs:Ajs_3496 para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding, C-terminal; Aminotransferase, class IV YP_004386937.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: dia:Dtpsy_2818 5-carboxymethyl-2-hydroxymuconate isomerase YP_004386938.1 TIGRFAM: L-aspartate oxidase; KEGG: vei:Veis_1080 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004386939.1 KEGG: reh:H16_A1911 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004386940.1 KEGG: axy:AXYL_05773 carboxymuconolactone decarboxylase family protein 5; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004386941.1 PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: ajs:Ajs_3492 condensin subunit ScpA YP_004386942.1 PFAM: Protein of unknown function DUF3460; KEGG: ajs:Ajs_3491 hypothetical protein YP_004386943.1 KEGG: dac:Daci_1840 putative lipoprotein YP_004386944.1 KEGG: ajs:Ajs_3488 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YP_004386945.1 KEGG: ajs:Ajs_3487 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase YP_004386946.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: dia:Dtpsy_2809 fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_004386947.1 KEGG: ajs:Ajs_3485 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; Helix-turn-helix, Fis-type; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004386948.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: tmz:Tmz1t_0983 glutamine amidotransferase YP_004386949.1 KEGG: dac:Daci_3709 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal YP_004386950.1 KEGG: dac:Daci_3710 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein YP_004386951.1 KEGG: tmz:Tmz1t_0986 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004386952.1 KEGG: dac:Daci_1842 hypothetical protein YP_004386953.1 TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; KEGG: dia:Dtpsy_2806 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain YP_004386954.1 PFAM: Patatin/Phospholipase A2-related; KEGG: dia:Dtpsy_2805 patatin YP_004386955.1 PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: dia:Dtpsy_2804 restriction endonuclease YP_004386956.1 KEGG: dia:Dtpsy_2803 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese-like YP_004386957.1 TIGRFAM: Selenide water dikinase; HAMAP: Selenide, water dikinase, class I; KEGG: ajs:Ajs_3479 selenophosphate synthase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal YP_004386958.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: dia:Dtpsy_2801 C4-dicarboxylate transporter/malic acid transport protein YP_004386959.1 PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; KEGG: ajs:Ajs_3476 hypothetical protein YP_004386960.1 PFAM: MaoC-like dehydratase; KEGG: bpt:Bpet0844 hypothetical protein YP_004386961.1 KEGG: vap:Vapar_0801 hypothetical protein YP_004386962.1 PFAM: MmgE/PrpD; KEGG: bpt:Bpet0850 hypothetical protein YP_004386963.1 KEGG: bpt:Bpet0851 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004386964.1 KEGG: bpt:Bpet0852 hypothetical protein; PFAM: CoA-transferase family III YP_004386965.1 KEGG: bpt:Bpet0853 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated YP_004386966.1 PFAM: Major facilitator superfamily MFS-1; KEGG: rfr:Rfer_4176 major facilitator transporter YP_004386967.1 PFAM: Aldehyde-lyase domain; KEGG: bpy:Bphyt_0618 citrate (pro-3S)-lyase YP_004386968.1 KEGG: dia:Dtpsy_2798 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH:ubiquinone oxidoreductase, 24kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004386969.1 SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Formate dehydrogenase, alpha subunit; KEGG: dia:Dtpsy_2797 formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Ferredoxin; 4Fe-4S binding domain; Molydopterin dinucleotide-binding domain YP_004386970.1 manually curated; KEGG: dia:Dtpsy_2796 hypothetical protein YP_004386971.1 KEGG: ajs:Ajs_3468 hypothetical protein YP_004386972.1 PFAM: 4Fe-4S binding domain; KEGG: ajs:Ajs_3467 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004386973.1 KEGG: dia:Dtpsy_2793 cytoplasmic chaperone TorD family protein YP_004386974.1 TIGRFAM: Formate dehydrogenase, TAT signal-containing; KEGG: dia:Dtpsy_2792 formate dehydrogenase region TAT target YP_004386975.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; KEGG: dia:Dtpsy_2791 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain YP_004386976.1 PFAM: 4Fe-4S binding domain; KEGG: dia:Dtpsy_2790 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004386977.1 KEGG: dia:Dtpsy_2789 putative lipoprotein YP_004386978.1 KEGG: ajs:Ajs_3461 formate dehydrogenase gamma subunit; TIGRFAM: Formate dehydrogenase, gamma subunit; PFAM: Cytochrome b/b6, N-terminal YP_004386979.1 KEGG: dia:Dtpsy_2787 hypothetical protein YP_004386980.1 PFAM: Formate dehydrogenase, subunit FdhD; KEGG: dia:Dtpsy_2786 formate dehydrogenase subunit FdhD YP_004386981.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2785 protein of unknown function DUF214 YP_004386982.1 KEGG: dia:Dtpsy_2784 hypothetical protein YP_004386983.1 KEGG: ajs:Ajs_3456 hypothetical protein YP_004386984.1 KEGG: dia:Dtpsy_2782 transcriptional regulator, TraR/DksA family YP_004386985.1 PFAM: Globin, truncated bacterial-like; KEGG: ajs:Ajs_3454 globin YP_004386986.1 KEGG: reu:Reut_B4840 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004386987.1 PFAM: Isocitrate lyase/phosphorylmutase; KEGG: reu:Reut_B4841 2,3-dimethylmalate lyase YP_004386988.1 KEGG: reu:Reut_B4842 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, subgroup; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004386989.1 KEGG: xtr:100490803 isopropylmalate/citramalate isomerase large subunit-like; TIGRFAM: Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004386990.1 KEGG: xtr:100490977 UPF0065 protein in tcbD-tcbE intergenic region-like YP_004386991.1 KEGG: dia:Dtpsy_2779 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal YP_004386992.1 KEGG: dia:Dtpsy_2778 hypothetical protein YP_004386993.1 KEGG: ajs:Ajs_3450 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758 YP_004386994.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dia:Dtpsy_2776 peptidylprolyl isomerase FKBP-type YP_004386995.1 PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: ajs:Ajs_3448 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_004386996.1 KEGG: ajs:Ajs_3447 hypothetical protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core YP_004386997.1 KEGG: aav:Aave_3769 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004386998.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase, class IIa; KEGG: dia:Dtpsy_2772 seryl-tRNA synthetase YP_004386999.1 KEGG: dac:Daci_5376 hypothetical protein YP_004387000.1 KEGG: mca:MCA1626 hypothetical protein YP_004387002.1 PFAM: Integrase, catalytic core, phage; KEGG: pol:Bpro_0966 phage integrase YP_004387003.1 PFAM: Protein of unknown function DUF1643; KEGG: mtt:Ftrac_0456 hypothetical protein YP_004387004.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: pde:Pden_0455 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3 YP_004387005.1 KEGG: ppn:Palpr_2996 hypothetical protein YP_004387006.1 KEGG: pol:Bpro_0961 hypothetical protein; manually curated; SMART: ATPase, AAA+ type, core YP_004387008.1 KEGG: app:CAP2UW1_1805 FRG domain protein; PFAM: FRG domain; SMART: FRG domain YP_004387009.1 KEGG: rva:Rvan_1233 hypothetical protein YP_004387010.1 KEGG: dac:Daci_5376 hypothetical protein YP_004387011.1 KEGG: rfr:Rfer_0701 hypothetical protein YP_004387012.1 TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Sugar transferase, PEP-CTERM system associated; KEGG: rfr:Rfer_0702 undecaprenyl-phosphate galactosephosphotransferase; PFAM: Bacterial sugar transferase YP_004387013.1 KEGG: dac:Daci_5418 histidine kinase; PFAM: CHASE2; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS YP_004387014.1 KEGG: dac:Daci_5417 peptidoglycan-binding LysM; PFAM: FecR protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004387015.1 KEGG: ctt:CtCNB1_0831 two component transcriptional regulator, winged; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004387016.1 TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: dia:Dtpsy_2771 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_004387017.1 PFAM: Peptidase M50; KEGG: dia:Dtpsy_2770 peptidase M50 YP_004387018.1 KEGG: dac:Daci_5413 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004387019.1 KEGG: dia:Dtpsy_2764 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal YP_004387020.1 KEGG: dia:Dtpsy_2763 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal YP_004387021.1 KEGG: ajs:Ajs_3430 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004387022.1 KEGG: ajs:Ajs_3424 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1 YP_004387023.1 PFAM: Bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: dia:Dtpsy_2757 hypothetical protein YP_004387024.1 manually curated; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; KEGG: dia:Dtpsy_2755 lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Domain of unknown function DUF214, ABC transporter permease YP_004387025.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Lipoprotein releasing system, ATP-binding protein; KEGG: dia:Dtpsy_2754 lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-like YP_004387026.1 PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_0985 cytochrome c class I YP_004387027.1 KEGG: dia:Dtpsy_0986 hypothetical protein YP_004387028.1 TIGRFAM: Dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0987 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004387029.1 TIGRFAM: Dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0988 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004387030.1 KEGG: dia:Dtpsy_0989 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004387031.1 KEGG: dia:Dtpsy_0990 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004387032.1 KEGG: dia:Dtpsy_0991 prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase YP_004387033.1 KEGG: dia:Dtpsy_0992 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004387034.1 KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase YP_004387035.1 KEGG: dia:Dtpsy_0994 hypothetical protein YP_004387036.1 PFAM: Crotonase, core; KEGG: ajs:Ajs_1079 enoyl-CoA hydratase/isomerase YP_004387037.1 KEGG: dia:Dtpsy_0996 malonyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase YP_004387038.1 PFAM: UspA; KEGG: dia:Dtpsy_0997 UspA domain protein YP_004387039.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_0998 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004387040.1 KEGG: dia:Dtpsy_0999 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type YP_004387041.1 TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: dia:Dtpsy_1000 cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I YP_004387042.1 KEGG: dia:Dtpsy_1001 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO YP_004387043.1 KEGG: dia:Dtpsy_1002 Cbb3-type cytochrome oxidase component YP_004387044.1 KEGG: ajs:Ajs_1087 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I YP_004387045.1 TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG YP_004387046.1 PFAM: FixH; KEGG: dia:Dtpsy_1005 hypothetical protein YP_004387047.1 KEGG: dia:Dtpsy_1006 hypothetical protein YP_004387048.1 KEGG: ajs:Ajs_1091 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain YP_004387049.1 TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: dia:Dtpsy_1008 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004387050.1 KEGG: ajs:Ajs_1093 hypothetical protein YP_004387051.1 TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: aav:Aave_1533 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain YP_004387052.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; KEGG: dac:Daci_2786 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS YP_004387053.1 PFAM: Cell division protein ZapA-like; KEGG: dia:Dtpsy_1010 protein of unknown function DUF710 YP_004387054.1 KEGG: ajs:Ajs_1095 hypothetical protein YP_004387055.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: aav:Aave_1537 TonB-dependent receptor YP_004387056.1 PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_1013 CobB/CobQ domain protein glutamine amidotransferase YP_004387057.1 KEGG: dia:Dtpsy_1014 cobalbumin biosynthesis protein; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase YP_004387058.1 PFAM: Periplasmic binding protein; KEGG: dia:Dtpsy_1015 periplasmic binding protein YP_004387059.1 PFAM: ABC transporter permease protein; KEGG: dia:Dtpsy_1016 transport system permease protein YP_004387060.1 manually curated; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1017 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004387061.1 TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: ctt:CtCNB1_1848 cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YP_004387062.1 KEGG: dia:Dtpsy_1019 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Methylguanine DNA methyltransferase, ribonuclease-like YP_004387063.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2354 methyltransferase type 11 YP_004387064.1 KEGG: gbm:Gbem_2134 NADPH-dependent enal/enone/nitroreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004387065.1 KEGG: reh:H16_B0202 extra-cytoplasmic solute receptor YP_004387066.1 KEGG: pde:Pden_3227 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004387067.1 KEGG: ara:Arad_7507 3-oxoacyl-(acyl-carrier-protein) reductase protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004387068.1 KEGG: axy:AXYL_06414 3-oxoacyl-[acyl-carrier-protein] reductase 10; PFAM: Short-chain dehydrogenase/reductase SDR YP_004387069.1 KEGG: pag:PLES_04421 putative acyl-CoA transferase; PFAM: CoA-transferase family III YP_004387070.1 KEGG: azl:AZL_d00150 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004387071.1 KEGG: reu:Reut_B3884 hypothetical protein YP_004387072.1 KEGG: vap:Vapar_5494 gamma-BHC dehydrochlorinase YP_004387073.1 PFAM: Crotonase, core; KEGG: swi:Swit_0321 1,4-dihydroxy-2-naphthoate synthase YP_004387074.1 PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein YP_004387075.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like YP_004387076.1 KEGG: gct:GC56T3_1469 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal YP_004387077.1 KEGG: rme:Rmet_5110 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core YP_004387078.1 PFAM: Crotonase, core; KEGG: swi:Swit_0344 enoyl-CoA hydratase YP_004387079.1 KEGG: axy:AXYL_06648 thiolase, C-terminal domain-containing protein 10 YP_004387080.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rpc:RPC_1073 hypothetical protein YP_004387081.1 KEGG: reu:Reut_B4556 CoA-binding; PFAM: CoA-binding; SMART: CoA-binding YP_004387082.1 KEGG: fal:FRAAL3384 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004387083.1 PFAM: Crotonase, core; KEGG: bxe:Bxe_C0267 short chain enoyl-CoA hydratase YP_004387084.1 KEGG: vei:Veis_4266 hypothetical protein YP_004387085.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: bbr:BB4332 hypothetical protein YP_004387086.1 TIGRFAM: Thiolase; KEGG: vap:Vapar_0843 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal YP_004387087.1 KEGG: vap:Vapar_1676 hypothetical protein YP_004387088.1 KEGG: dia:Dtpsy_2299 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004387089.1 KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004387090.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: reh:H16_B0372 pimeloyl-CoA dehydrogenase (small subunit) YP_004387091.1 KEGG: rme:Rmet_5530 acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004387092.1 KEGG: vap:Vapar_5507 hypothetical protein YP_004387093.1 PFAM: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3; KEGG: dia:Dtpsy_2561 protein of unknown function DUF498 YP_004387094.1 KEGG: dia:Dtpsy_2560 aminotransferase AlaT; PFAM: Aminotransferase, class I/classII YP_004387095.1 KEGG: ajs:Ajs_3206 homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT YP_004387096.1 KEGG: bts:Btus_3191 prevent-host-death family protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein YP_004387097.1 PFAM: PilT protein, N-terminal; KEGG: geo:Geob_1146 PilT protein domain protein YP_004387098.1 TIGRFAM: Threonine synthase; KEGG: dia:Dtpsy_2558 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004387099.1 TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB), conserved domain; KEGG: dia:Dtpsy_2557 molybdopterin-guanine dinucleotide biosynthesis protein B YP_004387100.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; MoeA, C-terminal, domain IV; Molybdopterin binding; KEGG: ajs:Ajs_3203 molybdenum cofactor synthesis domain-containing protein; SMART: Molybdopterin binding YP_004387101.1 KEGG: dia:Dtpsy_2555 molybdopterin converting factor, subunit 1; TIGRFAM: Molybdopterin converting factor, subunit 1; PFAM: ThiamineS YP_004387102.1 TIGRFAM: Dihydrodipicolinate synthase subfamily; KEGG: dac:Daci_5213 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase YP_004387103.1 KEGG: dia:Dtpsy_2554 hypothetical protein YP_004387104.1 PFAM: Protein of unknown function DUF3149; KEGG: dia:Dtpsy_2553 hypothetical protein YP_004387105.1 KEGG: dia:Dtpsy_2552 hypothetical protein YP_004387106.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: ajs:Ajs_3199 molybdopterin synthase subunit MoaE YP_004387107.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: dia:Dtpsy_2550 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core YP_004387108.1 KEGG: dia:Dtpsy_2549 hypothetical protein YP_004387109.1 KEGG: dia:Dtpsy_2547 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004387110.1 KEGG: dia:Dtpsy_2546 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004387111.1 PFAM: Methyltransferase small; KEGG: aav:Aave_1253 methyltransferase small YP_004387112.1 PFAM: tRNA-dihydrouridine synthase; KEGG: dia:Dtpsy_2544 dihydrouridine synthase DuS YP_004387113.1 KEGG: dia:Dtpsy_2543 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004387114.1 TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: dia:Dtpsy_2542 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding YP_004387115.1 KEGG: dia:Dtpsy_2540 fimbrial protein pilin YP_004387116.1 PFAM: PilC domain; KEGG: dac:Daci_5197 FG-GAP repeat-containing protein YP_004387117.1 KEGG: dac:Daci_5196 hypothetical protein YP_004387118.1 KEGG: dac:Daci_5195 hypothetical protein YP_004387119.1 TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: dac:Daci_5194 type IV pilus modification protein PilV YP_004387120.1 PFAM: General secretion pathway, GspH; KEGG: ajs:Ajs_3182 putative type-4 fimbrial pilin related signal peptide protein YP_004387121.1 KEGG: ajs:Ajs_3180 adenosylcobinamide-phosphate synthase; TIGRFAM: Cobalamin biosynthesis CobD/CbiB; PFAM: Cobalamin biosynthesis CobD/CbiB YP_004387122.1 KEGG: dia:Dtpsy_2532 aminotransferase class I and II YP_004387123.1 TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: ajs:Ajs_3178 adenosylcobyric acid synthase (glutamine-hydrolysing); PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase YP_004387124.1 TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; KEGG: ajs:Ajs_3176 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like YP_004387125.1 PFAM: Appr-1-p processing; KEGG: pag:PLES_35831 hypothetical protein YP_004387126.1 SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Endonuclease III/Nth; KEGG: ajs:Ajs_3170 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD domain; Helix-hairpin-helix motif; Endonuclease III-like, iron-sulphur cluster loop motif YP_004387127.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2826 LysR family transcriptional regulator YP_004387128.1 PFAM: Amidase; KEGG: dac:Daci_2827 amidase YP_004387129.1 KEGG: dac:Daci_2828 hypothetical protein YP_004387130.1 KEGG: dac:Daci_3099 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding YP_004387131.1 KEGG: aav:Aave_1563 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII YP_004387132.1 PFAM: SlyX; KEGG: dia:Dtpsy_2515 SlyX family protein YP_004387133.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ajs:Ajs_3167 aldo/keto reductase YP_004387134.1 PFAM: Copper resistance D; KEGG: ajs:Ajs_3166 hypothetical protein YP_004387135.1 KEGG: dia:Dtpsy_2512 hypothetical protein YP_004387136.1 KEGG: aav:Aave_1570 globin-like protein YP_004387137.1 KEGG: dia:Dtpsy_2511 hemerythrin HHE cation binding domain protein; TIGRFAM: Iron-sulfur cluster repair di-iron protein; PFAM: Domain of unknown function DUF542, ScdA N-terminal; Haemerythrin/HHE cation-binding motif YP_004387138.1 KEGG: dia:Dtpsy_2510 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2 YP_004387139.1 KEGG: ctt:CtCNB1_1949 putative serine protein kinase, PrkA; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA YP_004387140.1 KEGG: dac:Daci_2328 hypothetical protein; HAMAP: Uncharacterised protein family UPF0229; PFAM: Uncharacterised protein family UPF0229 YP_004387141.1 PFAM: Sporulation stage V, protein R; KEGG: dac:Daci_2329 SpoVR family protein YP_004387142.1 KEGG: dia:Dtpsy_2507 lipoprotein, YaeC family; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein YP_004387143.1 KEGG: ajs:Ajs_3313 histidine kinase internal region; PFAM: Signal transduction histidine kinase, internal region; SMART: ATPase-like, ATP-binding domain YP_004387144.1 TIGRFAM: Argininosuccinate lyase; KEGG: dia:Dtpsy_2664 argininosuccinate lyase; PFAM: Lyase 1, N-terminal YP_004387145.1 KEGG: ajs:Ajs_3311 hypothetical protein YP_004387146.1 PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; Alpha-2-macroglobulin; KEGG: dia:Dtpsy_2661 alpha-2-macroglobulin domain protein YP_004387147.1 PFAM: Metallo-dependent phosphatase; KEGG: dac:Daci_4972 metallophosphoesterase YP_004387148.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2067 LysR family transcriptional regulator YP_004387149.1 KEGG: vap:Vapar_4821 hypothetical protein YP_004387150.1 PFAM: Asparaginase/glutaminase; KEGG: axy:AXYL_04759 L-asparaginase 1; SMART: Asparaginase/glutaminase YP_004387151.1 KEGG: rme:Rmet_5425 putative butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004387152.1 KEGG: dac:Daci_1885 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding YP_004387153.1 KEGG: gpb:HDN1F_16010 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004387154.1 KEGG: bbr:BB0464 putative dehydratase/racemase YP_004387155.1 KEGG: dia:Dtpsy_2653 hypothetical protein YP_004387156.1 TIGRFAM: Penicillin-binding protein 1C; KEGG: ajs:Ajs_3299 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal YP_004387157.1 KEGG: dac:Daci_3482 hypothetical protein YP_004387158.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; KEGG: dac:Daci_3483 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; HAMP linker domain YP_004387159.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dac:Daci_3484 OmpA/MotB domain-containing protein YP_004387160.1 KEGG: ajs:Ajs_3298 (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent dehydrogenase YP_004387161.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2650 hypothetical protein YP_004387162.1 KEGG: bbr:BB0981 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain YP_004387163.1 KEGG: bbr:BB0982 hypothetical protein; PFAM: CoA-transferase family III YP_004387164.1 KEGG: bbr:BB0983 hypothetical protein YP_004387165.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bbr:BB0984 LysR family transcriptional regulator YP_004387166.1 KEGG: aav:Aave_1964 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like YP_004387167.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: dia:Dtpsy_2648 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; PAC motif YP_004387168.1 TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, YqcD; KEGG: ajs:Ajs_3294 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase YP_004387169.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit YP_004387170.1 PFAM: Uncharacterised protein family UPF0246; KEGG: dia:Dtpsy_2644 hypothetical protein YP_004387171.1 TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: ajs:Ajs_3290 ribonuclease E; SMART: RNA-binding domain, S1 YP_004387172.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; Zinc finger, FLYWCH-type; KEGG: dia:Dtpsy_2642 pseudouridine synthase, RluA family; SMART: RNA-binding S4 YP_004387173.1 KEGG: dia:Dtpsy_2641 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004387174.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: dia:Dtpsy_2640 Rieske (2Fe-2S) domain protein YP_004387175.1 PFAM: Peptidase S49; KEGG: dia:Dtpsy_2639 peptidase S49 YP_004387176.1 PFAM: Tetrapyrrole methylase; KEGG: dia:Dtpsy_2638 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_004387177.1 KEGG: dia:Dtpsy_2637 maf protein; TIGRFAM: Maf-like protein; PFAM: Maf-like protein YP_004387178.1 PFAM: Protein of unknown function DUF177; KEGG: dia:Dtpsy_2636 protein of unknown function DUF177 YP_004387179.1 KEGG: aav:Aave_1181 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; PFAM: Ribosomal protein L32p YP_004387180.1 PFAM: Fatty acid synthesis PlsX protein; manually curated; TIGRFAM: Phospholipid biosynthesis protein, PlsX-like; KEGG: dia:Dtpsy_2634 putative glycerol-3-phosphate acyltransferase PlsX; HAMAP: Phospholipid biosynthesis protein, PlsX-like YP_004387181.1 TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: dia:Dtpsy_2633 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_004387182.1 TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase YP_004387183.1 KEGG: dia:Dtpsy_2631 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004387184.1 SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Acyl carrier protein (ACP); KEGG: ctt:CtCNB1_0973 acyl carrier protein; HAMAP: Acyl carrier protein (ACP); PFAM: Phosphopantetheine-binding YP_004387185.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: dia:Dtpsy_2629 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004387186.1 KEGG: dia:Dtpsy_2628 hypothetical protein YP_004387187.1 KEGG: dia:Dtpsy_2627 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004387188.1 PFAM: Anti sigma-E protein RseA, N-terminal; KEGG: dia:Dtpsy_2626 anti sigma-E protein, RseA YP_004387189.1 KEGG: dia:Dtpsy_2625 sigma E regulatory protein, MucB/RseB; manually curated; PFAM: MucB/RseB YP_004387190.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: dia:Dtpsy_2624 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_004387191.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; GTP-binding protein LepA, C-terminal; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: dia:Dtpsy_2623 GTP-binding protein LepA; SMART: Translation elongation factor EFG/EF2, C-terminal YP_004387192.1 KEGG: dia:Dtpsy_2622 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region YP_004387193.1 KEGG: dia:Dtpsy_2621 putative transmembrane protein YP_004387194.1 KEGG: ajs:Ajs_3267 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA-binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA-binding YP_004387195.1 KEGG: dia:Dtpsy_2619 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_004387196.1 KEGG: ajs:Ajs_3265 DNA repair protein RecO; TIGRFAM: Recombination protein O, RecO; PFAM: DNA replication/recombination mediator RecO, N-terminal; Recombination protein O, RecO YP_004387197.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: dia:Dtpsy_2616 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YP_004387198.1 KEGG: dia:Dtpsy_2615 4'-phosphopantetheinyl transferase; TIGRFAM: Phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; PFAM: 4'-phosphopantetheinyl transferase YP_004387199.1 PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: dia:Dtpsy_2614 beta-N-acetylhexosaminidase YP_004387200.1 KEGG: ajs:Ajs_3260 6-phosphofructokinase; PFAM: Phosphofructokinase domain YP_004387201.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2610 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004387202.1 PFAM: ABC transporter-like; KEGG: xtr:100485612 putative ribose/galactose/methyl galactoside import ATP-binding protein-like; SMART: ATPase, AAA+ type, core YP_004387203.1 PFAM: ABC transporter permease; High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal; KEGG: dia:Dtpsy_2608 leucine/isoleucine/valine transporter permease subunit YP_004387204.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2607 inner-membrane translocator YP_004387205.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_4331 extracellular ligand-binding receptor YP_004387206.1 PFAM: Mechanosensitive ion channel MscS; KEGG: ajs:Ajs_3252 small-conductance mechanosensitive channel-like protein YP_004387207.1 TIGRFAM: Lysyl-tRNA synthetase, class II; KEGG: ajs:Ajs_3250 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004387208.1 PFAM: Bacterial sugar transferase; KEGG: lch:Lcho_0300 sugar transferase YP_004387209.1 KEGG: mpt:Mpe_A0607 lipopolysaccharide biosynthesis protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004387210.1 PFAM: Methyltransferase type 11; KEGG: mpt:Mpe_A0605 hypothetical protein YP_004387211.1 PFAM: Glycosyl transferase, family 2; KEGG: bpt:Bpet1524 glycosyltransferase YP_004387212.1 PFAM: Glycosyl transferase, group 1; KEGG: bpt:Bpet1525 glycosyltransferase YP_004387213.1 KEGG: bpt:Bpet1526 acetyltransferase YP_004387214.1 PFAM: Polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein YP_004387215.1 PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: pol:Bpro_3983 polysaccharide biosynthesis protein CapD YP_004387216.1 PFAM: Peptidase S16, lon N-terminal; KEGG: xtr:100498456 hypothetical protein LOC100498456 YP_004387217.1 PFAM: Uncharacterised protein family Ycf19; KEGG: dia:Dtpsy_2595 protein of unknown function YGGT YP_004387218.1 TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; KEGG: ajs:Ajs_3241 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; PFAM: Carboxyl transferase YP_004387219.1 TIGRFAM: Tryptophan synthase, alpha chain; KEGG: ajs:Ajs_3240 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain YP_004387220.1 TIGRFAM: Tryptophan synthase, beta chain; KEGG: ajs:Ajs_3239 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004387221.1 KEGG: ajs:Ajs_3238 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_004387222.1 KEGG: dia:Dtpsy_2590 tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_004387223.1 TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: ajs:Ajs_3236 putative transmembrane protein YP_004387224.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, proteobacteria; KEGG: ctt:CtCNB1_1004 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding YP_004387225.1 TIGRFAM: Isopropylmalate dehydrogenase; KEGG: dia:Dtpsy_2586 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004387226.1 KEGG: dia:Dtpsy_2585 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004387227.1 PFAM: Entericidin EcnAB; KEGG: dac:Daci_5236 entericidin EcnAB YP_004387228.1 KEGG: ajs:Ajs_3229 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004387229.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_2581 transcriptional regulator, LysR family YP_004387230.1 KEGG: dia:Dtpsy_2580 beta-lactamase domain protein; PFAM: Beta-Casp domain; RNA-metabolising metallo-beta-lactamase; Beta-lactamase-like; SMART: Beta-lactamase-like YP_004387231.1 PFAM: Cytochrome P450; KEGG: ajs:Ajs_3226 cytochrome P450 YP_004387232.1 KEGG: ajs:Ajs_3225 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related YP_004387233.1 KEGG: dia:Dtpsy_2577 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein YP_004387234.1 PFAM: DGC; KEGG: ajs:Ajs_3223 hypothetical protein YP_004387235.1 PFAM: SCP2 sterol-binding domain; KEGG: ajs:Ajs_3222 hypothetical protein YP_004387236.1 PFAM: Peptidase U32; KEGG: ajs:Ajs_3221 peptidase U32 YP_004387237.1 PFAM: Peptidase U32; KEGG: ajs:Ajs_3220 peptidase U32 YP_004387238.1 KEGG: rfr:Rfer_2475 tryptophanase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004387239.1 KEGG: maq:Maqu_1010 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004387240.1 TIGRFAM: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, cysteine-rich domain; Heat shock protein DnaJ, N-terminal; KEGG: dia:Dtpsy_2572 chaperone protein DnaJ; SMART: Heat shock protein DnaJ, N-terminal YP_004387241.1 KEGG: dia:Dtpsy_2571 molecular chaperone DnaK; TIGRFAM: Chaperone DnaK; PFAM: Heat shock protein 70 YP_004387242.1 PFAM: GrpE nucleotide exchange factor; KEGG: dia:Dtpsy_2570 heat shock protein GrpE YP_004387243.1 KEGG: dia:Dtpsy_2569 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; PFAM: Ribosomal protein S6 YP_004387244.1 PFAM: Primosome PriB/single-strand DNA-binding; KEGG: dia:Dtpsy_2568 putative primosomal replication protein YP_004387245.1 TIGRFAM: Ribosomal protein S18; HAMAP: Ribosomal protein S18; KEGG: aav:Aave_1230 30S ribosomal protein S18; PFAM: Ribosomal protein S18 YP_004387246.1 KEGG: dia:Dtpsy_2566 50S ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal YP_004387247.1 TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: dia:Dtpsy_2565 replicative DNA helicase; SMART: ATPase, AAA+ type, core YP_004387248.1 KEGG: bpd:BURPS668_A2080 putative piperideine-6-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004387249.1 KEGG: dia:Dtpsy_2563 PhoH family protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc YP_004387250.1 PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: dia:Dtpsy_2562 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004387251.1 KEGG: ajs:Ajs_1106 hypothetical protein YP_004387252.1 PFAM: Cytochrome b/b6, N-terminal; KEGG: dia:Dtpsy_1026 cytochrome b561 YP_004387253.1 KEGG: dia:Dtpsy_1027 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like YP_004387254.1 KEGG: dia:Dtpsy_1028 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like YP_004387255.1 PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: ajs:Ajs_1112 malic enzyme; SMART: Malic enzyme, NAD-binding YP_004387256.1 KEGG: dac:Daci_2107 xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease YP_004387257.1 KEGG: dia:Dtpsy_2395 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004387258.1 PFAM: Peptidase M20, dimerisation; Peptidase M20; KEGG: dia:Dtpsy_1035 peptidase dimerisation domain protein YP_004387259.1 TIGRFAM: Amidase, hydantoinase/carbamoylase; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1; KEGG: ajs:Ajs_1115 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Peptidase M20 YP_004387260.1 TIGRFAM: Putative urate catabolism protein; KEGG: dia:Dtpsy_1037 urate catabolism protein; PFAM: Polysaccharide deacetylase YP_004387261.1 KEGG: dia:Dtpsy_1038 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004387262.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1039 transcriptional regulator, LysR family YP_004387263.1 TIGRFAM: Tartrate dehydrogenase; KEGG: ajs:Ajs_1120 tartrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004387264.1 KEGG: dia:Dtpsy_1041 hypothetical protein YP_004387265.1 KEGG: ajs:Ajs_1122 hydroxypyruvate reductase; PFAM: MOFRL domain YP_004387266.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: axy:AXYL_05357 LysR family regulatory helix-turn-helix protein 171 YP_004387267.1 KEGG: axy:AXYL_05358 2,2-dialkylglycine decarboxylase; PFAM: Aminotransferase class-III YP_004387268.1 KEGG: lch:Lcho_4024 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004387269.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2116 LysR family transcriptional regulator YP_004387270.1 TIGRFAM: Glyoxylate carboligase; KEGG: dac:Daci_2117 glyoxylate carboligase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004387271.1 TIGRFAM: Hydroxypyruvate isomerase; KEGG: ctt:CtCNB1_3709 xylose isomerase-like TIM barrel; PFAM: Xylose isomerase, TIM barrel domain YP_004387272.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: dac:Daci_2119 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004387273.1 KEGG: dac:Daci_0940 hypothetical protein YP_004387274.1 TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: dac:Daci_2120 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase YP_004387275.1 TIGRFAM: Hydroxyisourate hydrolase; KEGG: dia:Dtpsy_1043 hydroxyisourate hydrolase; PFAM: Transthyretin/hydroxyisourate hydrolase YP_004387276.1 KEGG: dia:Dtpsy_1044 hypothetical protein YP_004387277.1 TIGRFAM: Xanthine dehydrogenase accessory protein XdhC; KEGG: ajs:Ajs_1125 hypothetical protein YP_004387278.1 PFAM: Protein of unknown function DUF989; KEGG: ajs:Ajs_1128 hypothetical protein YP_004387279.1 TIGRFAM: Deoxycytidine triphosphate deaminase; KEGG: dia:Dtpsy_1050 deoxycytidine triphosphate deaminase; PFAM: DeoxyUTP pyrophosphatase domain YP_004387280.1 PFAM: Uncharacterised protein family, zinc metallopeptidase putative; KEGG: dia:Dtpsy_1052 protein of unknown function zinc metallopeptidase putative YP_004387281.1 KEGG: dia:Dtpsy_1053 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004387282.1 PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: dia:Dtpsy_1054 hypothetical protein YP_004387283.1 PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: dia:Dtpsy_1055 NosL family protein YP_004387284.1 KEGG: dia:Dtpsy_1056 ABC-2 type transporter YP_004387285.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1057 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004387286.1 TIGRFAM: Parallel beta-helix repeat-2; PFAM: Periplasmic copper-binding; Domain of unknown function DUF1565; KEGG: dia:Dtpsy_1058 periplasmic copper-binding; SMART: Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat YP_004387287.1 KEGG: dia:Dtpsy_1059 FMN-binding domain protein; PFAM: FMN-binding; SMART: FMN-binding YP_004387288.1 KEGG: ajs:Ajs_1139 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal YP_004387289.1 KEGG: dia:Dtpsy_1061 hypothetical protein YP_004387290.1 PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_1062 cytochrome c class I YP_004387291.1 PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: dia:Dtpsy_1063 ApbE family lipoprotein YP_004387292.1 TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: dia:Dtpsy_1064 diadenosine tetraphosphatase; PFAM: Metallo-dependent phosphatase YP_004387293.1 PFAM: Histone-like nucleoid-structuring protein H-NS; KEGG: dia:Dtpsy_1065 histone family protein nucleoid-structuring protein H-NS YP_004387294.1 TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: ajs:Ajs_1145 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004387295.1 PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_1146 monooxygenase, FAD-binding YP_004387296.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1068 major facilitator superfamily MFS_1 YP_004387297.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bpe:BP2600 hypothetical protein YP_004387298.1 KEGG: dia:Dtpsy_1069 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004387299.1 PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; KEGG: vei:Veis_2283 signal transduction histidine kinase, LytS YP_004387300.1 KEGG: vei:Veis_2284 hypothetical protein YP_004387301.1 KEGG: xtr:100495621 UPF0065 protein in clcB-clcD intergenic region-like YP_004387302.1 TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Bacitracin resistance protein BacA; KEGG: ajs:Ajs_1152 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA YP_004387303.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_1074 alpha/beta hydrolase fold protein YP_004387304.1 KEGG: dac:Daci_2256 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Uncharacterised protein domain Spy-rel YP_004387305.1 PFAM: Acriflavin resistance protein; KEGG: dac:Daci_2257 acriflavin resistance protein YP_004387306.1 PFAM: Acriflavin resistance protein; KEGG: dac:Daci_2258 acriflavin resistance protein YP_004387307.1 KEGG: dac:Daci_2259 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004387308.1 KEGG: dia:Dtpsy_1076 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; manually curated; TIGRFAM: DNA mismatch repair protein MutS, type 1; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; HAMAP: DNA mismatch repair protein MutS, type 1 YP_004387309.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bph:Bphy_3516 TetR family transcriptional regulator YP_004387310.1 KEGG: bja:bll6360 putative bifunctional enzyme 2-hydroxyhepta-2,4-diene-1,7-dioatesomerase 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase protein; PFAM: Fumarylacetoacetase, C-terminal-like YP_004387312.1 KEGG: dac:Daci_5118 hypothetical protein YP_004387313.1 KEGG: dac:Daci_0789 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase YP_004387314.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0788 LysR family transcriptional regulator YP_004387315.1 KEGG: dia:Dtpsy_1077 alkaline phosphatase; PFAM: Alkaline phosphatase D-related YP_004387316.1 SMART: Diguanylate cyclase, predicted; TIGRFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_1078 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted YP_004387317.1 TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; KEGG: ajs:Ajs_1160 stationary phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase YP_004387318.1 TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: dia:Dtpsy_1081 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004387319.1 KEGG: dia:Dtpsy_1082 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004387320.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: dia:Dtpsy_1083 pseudouridine synthase, RluA family; SMART: RNA-binding S4 YP_004387321.1 KEGG: dia:Dtpsy_1084 chromosome segregation and condensation protein, ScpB; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote YP_004387322.1 TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: dia:Dtpsy_1085 pseudouridine synthase; SMART: RNA-binding S4 YP_004387323.1 PFAM: Nucleoside diphosphate kinase; KEGG: ajs:Ajs_1166 nucleoside diphosphate kinase; SMART: Nucleoside diphosphate kinase YP_004387324.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: dia:Dtpsy_1087 radical SAM enzyme, Cfr family; PFAM: Radical SAM YP_004387325.1 KEGG: dia:Dtpsy_1088 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1 YP_004387326.1 KEGG: dia:Dtpsy_1089 hypothetical protein YP_004387327.1 KEGG: dia:Dtpsy_1090 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_004387328.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: dia:Dtpsy_1091 histidyl-tRNA synthetase YP_004387329.1 PFAM: Protein of unknown function DUF2133; KEGG: dia:Dtpsy_1092 hypothetical protein YP_004387330.1 KEGG: dia:Dtpsy_1093 outer membrane assembly lipoprotein YfgL; TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat YP_004387331.1 KEGG: dia:Dtpsy_1094 GTP-binding protein EngA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related YP_004387332.1 KEGG: dia:Dtpsy_1095 RNA chaperone Hfq; TIGRFAM: Host factor Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain YP_004387333.1 KEGG: ajs:Ajs_1176 small GTP-binding protein; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related YP_004387334.1 TIGRFAM: HflK; PFAM: Band 7 protein; Protein HflK, N-terminal; KEGG: dia:Dtpsy_1097 HflK protein; SMART: Band 7 protein YP_004387335.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: ajs:Ajs_1178 HflC protein; SMART: Band 7 protein YP_004387336.1 PFAM: Protein of unknown function DUF2065; KEGG: ajs:Ajs_1179 hypothetical protein YP_004387337.1 TIGRFAM: Histidyl-tRNA synthetase, class IIa, putative; KEGG: ajs:Ajs_1180 tRNA synthetase, class II (G, H, P and S) YP_004387338.1 SMART: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; KEGG: dia:Dtpsy_1101 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase YP_004387339.1 PFAM: Phosphoribosyltransferase; KEGG: ajs:Ajs_1182 phosphoribosyltransferase YP_004387340.1 KEGG: ajs:Ajs_1183 ribosomal small subunit pseudouridine synthase A; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004387341.1 KEGG: dia:Dtpsy_1104 hypothetical protein YP_004387342.1 KEGG: dia:Dtpsy_1105 polysaccharide deacetylase; manually curated; PFAM: Polysaccharide deacetylase YP_004387343.1 PFAM: Fatty acid hydroxylase; KEGG: dia:Dtpsy_1106 fatty acid hydroxylase YP_004387344.1 PFAM: Uncharacterised protein family CysZ; KEGG: dia:Dtpsy_1107 putative transmembrane protein YP_004387345.1 KEGG: ajs:Ajs_1188 molybdopterin binding domain-containing protein; PFAM: Molybdopterin binding; SMART: Molybdopterin binding YP_004387346.1 TIGRFAM: Glutamine synthetase type I; KEGG: aav:Aave_1442 L-glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp YP_004387347.1 KEGG: dia:Dtpsy_1110 putative signal peptide protein YP_004387348.1 manually curated; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_1111 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004387349.1 TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: dia:Dtpsy_1112 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004387350.1 TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: dia:Dtpsy_1114 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_004387351.1 KEGG: shn:Shewana3_1258 XRE family transcriptional regulator YP_004387352.1 TIGRFAM: ATPase, K+ transporting, A subunit; KEGG: pap:PSPA7_3712 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit YP_004387353.1 PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: tgr:Tgr7_1888 potassium-transporting ATPase subunit B YP_004387354.1 TIGRFAM: Potassium transporting ATPase, C subunit; KEGG: pap:PSPA7_3714 K+-transporting ATPase subunit C; PFAM: Potassium transporting ATPase, C subunit YP_004387355.1 KEGG: tgr:Tgr7_1885 sensor protein KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; ATPase-like, ATP-binding domain; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF YP_004387356.1 KEGG: tgr:Tgr7_1884 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004387357.1 KEGG: rle:pRL110581 putative transposase-related protein YP_004387358.1 PFAM: Transposase, IS4-like; KEGG: nwi:Nwi_1015 transposase, IS4 YP_004387359.1 PFAM: Protein of unknown function DUF3348; KEGG: vap:Vapar_3241 hypothetical protein YP_004387360.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Domain of unknown function DUF802; KEGG: vap:Vapar_3240 protein of unknown function DUF802 YP_004387361.1 KEGG: dia:Dtpsy_1115 dihydrofolate reductase; PFAM: Dihydrofolate reductase domain YP_004387362.1 TIGRFAM: Thymidylate synthase; KEGG: ajs:Ajs_1197 thymidylate synthase; PFAM: Thymidylate synthase YP_004387363.1 KEGG: dia:Dtpsy_1117 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_004387364.1 PFAM: Protein of unknown function DUF2069, membrane; KEGG: dia:Dtpsy_1118 membrane protein-like protein YP_004387365.1 KEGG: dia:Dtpsy_1119 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related YP_004387366.1 PFAM: Protein of unknown function DUF2868; Protein of unknown function DUF3482; KEGG: pna:Pnap_2063 hypothetical protein YP_004387367.1 KEGG: ajs:Ajs_1201 amine oxidase; TIGRFAM: Squalene-associated FAD-dependent desaturase; PFAM: Amine oxidase YP_004387368.1 KEGG: rfr:Rfer_3023 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004387369.1 TIGRFAM: Squalene/phytoene synthase HpnD; KEGG: dia:Dtpsy_1121 squalene synthase HpnD; PFAM: Squalene/phytoene synthase YP_004387370.1 KEGG: dia:Dtpsy_1124 squalene synthase HpnC; TIGRFAM: Squalene synthase HpnC; PFAM: Squalene/phytoene synthase YP_004387371.1 KEGG: dia:Dtpsy_1125 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004387372.1 PFAM: Acriflavin resistance protein; KEGG: ajs:Ajs_1207 acriflavin resistance protein YP_004387373.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: dia:Dtpsy_1127 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial YP_004387374.1 TIGRFAM: Peptidase S14, ClpP; KEGG: dia:Dtpsy_1128 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP YP_004387375.1 TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Clp ATPase, C-terminal; Zinc finger, C4-type; KEGG: dia:Dtpsy_1129 ATP-dependent protease ATP-binding subunit ClpX; SMART: ATPase, AAA+ type, core YP_004387376.1 SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: dia:Dtpsy_1130 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core YP_004387377.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_4464 TetR family transcriptional regulator YP_004387378.1 KEGG: bbr:BB0589 hypothetical protein; PFAM: Aldehyde-lyase domain YP_004387379.1 PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7289 MaoC-like dehydratase YP_004387380.1 KEGG: bur:Bcep18194_C7290 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004387381.1 KEGG: bur:Bcep18194_B2644 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004387382.1 KEGG: bbr:BB0593 CaiB/BaiF family protein; PFAM: CoA-transferase family III YP_004387383.1 KEGG: bbr:BB0594 hypothetical protein YP_004387384.1 KEGG: bbr:BB0595 hypothetical protein YP_004387385.1 PFAM: Nitroreductase-like; KEGG: bbr:BB0596 nitroreductase family protein YP_004387386.1 PFAM: Crotonase, core; KEGG: bbr:BB0597 enoyl-CoA hydratase/isomerase family protein YP_004387387.1 PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB0598 extracellular ligand binding protein YP_004387388.1 PFAM: ABC transporter permease; KEGG: bbr:BB0599 putative branched-chain amino acid transport system permease protein YP_004387389.1 PFAM: ABC transporter permease; KEGG: bbr:BB0600 putative branched-chain amino acid transport system permease protein YP_004387390.1 PFAM: ABC transporter-like; KEGG: bbr:BB0601 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004387391.1 PFAM: ABC transporter-like; KEGG: bbr:BB0602 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004387392.1 KEGG: bbr:BB0603 NADH:flavin oxidoreductase / NADH oxidase family protein; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; Alanine dehydrogenase/PNT, C-terminal YP_004387393.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0604 short chain dehydrogenase YP_004387394.1 PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_B2639 hypothetical protein YP_004387395.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2640 LysR family transcriptional regulator YP_004387396.1 KEGG: bbr:BB0605 hypothetical protein YP_004387397.1 KEGG: bur:Bcep18194_C7493 alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III YP_004387400.1 KEGG: reu:Reut_A1830 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004387401.1 KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004387402.1 KEGG: reu:Reut_A1831 hypothetical protein YP_004387403.1 KEGG: eba:ebA306 lipid-transfer protein; PFAM: Beta-ketoacyl synthase, C-terminal YP_004387404.1 KEGG: bbt:BBta_2933 hypothetical protein YP_004387405.1 PFAM: Protein of unknown function DUF1446; KEGG: sth:STH1574 hypothetical protein YP_004387406.1 PFAM: MaoC-like dehydratase; KEGG: reu:Reut_A1834 MaoC-like dehydratase YP_004387407.1 KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004387409.1 KEGG: bur:Bcep18194_C7276 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004387410.1 PFAM: Crotonase, core; KEGG: pol:Bpro_5272 short chain enoyl-CoA hydratase YP_004387411.1 KEGG: reu:Reut_A1831 hypothetical protein YP_004387412.1 KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004387413.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bur:Bcep18194_C7486 LysR family transcriptional regulator YP_004387414.1 KEGG: bur:Bcep18194_C7484 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004387415.1 KEGG: vei:Veis_2943 hypothetical protein YP_004387416.1 KEGG: bur:Bcep18194_C6760 hypothetical protein YP_004387417.1 PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C6759 MmgE/PrpD YP_004387418.1 KEGG: bbr:BB0608 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004387419.1 KEGG: bpa:BPP0603 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004387420.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: bxe:Bxe_A2766 non-heme peroxidase YP_004387421.1 KEGG: bbr:BB0611 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004387422.1 KEGG: bpa:BPP0606 putative enoyl-CoA hydratase; PFAM: MaoC-like dehydratase YP_004387423.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0613 putative short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR YP_004387424.1 TIGRFAM: Thiolase; KEGG: bur:Bcep18194_C7332 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004387425.1 KEGG: bbr:BB0615 AMP-binding enzyme; PFAM: AMP-dependent synthetase/ligase YP_004387426.1 KEGG: bpa:BPP0610 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004387427.1 KEGG: bbr:BB0617 CaiB/BaiF family protein; PFAM: CoA-transferase family III YP_004387428.1 PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C7308 MmgE/PrpD YP_004387429.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bur:Bcep18194_C7296 LysR family transcriptional regulator YP_004387430.1 KEGG: bur:Bcep18194_C7297 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004387431.1 KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004387432.1 KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004387433.1 KEGG: bbr:BB0622 hypothetical protein YP_004387434.1 KEGG: bur:Bcep18194_C7301 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004387435.1 PFAM: Aldehyde-lyase domain; KEGG: bur:Bcep18194_C7302 HpcH/HpaI aldolase YP_004387436.1 KEGG: jan:Jann_2264 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004387437.1 PFAM: ABC transporter-like; KEGG: jan:Jann_2265 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004387438.1 PFAM: ABC transporter permease; KEGG: jan:Jann_2266 inner-membrane translocator YP_004387439.1 PFAM: ABC transporter permease; KEGG: jan:Jann_2267 inner-membrane translocator YP_004387440.1 PFAM: Extracellular ligand-binding receptor; KEGG: jan:Jann_2263 extracellular ligand-binding receptor YP_004387441.1 KEGG: bur:Bcep18194_C7304 zinc-containing alcohol dehydrogenase superfamily protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like YP_004387442.1 PFAM: Aldehyde dehydrogenase domain; KEGG: bur:Bcep18194_C6756 aldehyde dehydrogenase (acceptor) YP_004387444.1 KEGG: bbr:BB0625 hypothetical protein YP_004387445.1 PFAM: MmgE/PrpD; KEGG: bpa:BPP0622 hypothetical protein YP_004387446.1 KEGG: bur:Bcep18194_C7305 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain YP_004387447.1 KEGG: bur:Bcep18194_C7306 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain YP_004387448.1 PFAM: Crotonase, core; KEGG: bbr:BB0629 enoyl-CoA hydratase YP_004387449.1 PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: aav:Aave_4649 protein of unknown function DUF894, DitE YP_004387450.1 PFAM: Porin, Gram-negative type; KEGG: bcm:Bcenmc03_6621 porin YP_004387451.1 KEGG: reu:Reut_B3884 hypothetical protein YP_004387452.1 PFAM: ABC transporter permease; KEGG: dac:Daci_0260 inner-membrane translocator YP_004387453.1 PFAM: ABC transporter permease; KEGG: dac:Daci_0261 inner-membrane translocator YP_004387454.1 PFAM: ABC transporter-like; KEGG: dac:Daci_0262 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004387455.1 PFAM: ABC transporter-like; KEGG: dac:Daci_0263 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004387456.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0264 extracellular ligand-binding receptor YP_004387457.1 KEGG: tin:Tint_1587 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004387458.1 KEGG: tin:Tint_1589 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004387459.1 KEGG: dac:Daci_0266 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004387460.1 KEGG: reh:H16_A2948 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004387461.1 PFAM: Histone-like nucleoid-structuring protein H-NS; KEGG: ctt:CtCNB1_0646 histone-like nucleoid-structuring protein H-NS YP_004387462.1 PFAM: Major facilitator superfamily MFS-1; KEGG: azo:azo3693 hypothetical protein YP_004387463.1 PFAM: Integrase, catalytic core; KEGG: pol:Bpro_0754 integrase catalytic subunit YP_004387464.1 manually curated; KEGG: bxe:Bxe_A1801 hypothetical protein YP_004387465.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004387466.1 PFAM: Transposase, IS4-like; KEGG: bmj:BMULJ_05861 ISBmu20 transposase YP_004387467.1 PFAM: Transposase, IS4-like; KEGG: axy:AXYL_01136 transposase, IS4 family protein 1 YP_004387469.1 PFAM: Integrase, catalytic core; KEGG: xop:PXO_02075 IS1112 transposase YP_004387470.1 PFAM: Protein of unknown function DUF2274; KEGG: pap:PSPA7_3696 conjugal transfer protein YP_004387471.1 PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: pap:PSPA7_3697 conjugation TrbI family protein YP_004387472.1 KEGG: rme:Rmet_1349 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX YP_004387473.1 KEGG: pap:PSPA7_3699 conjugal transfer protein TrbF YP_004387474.1 KEGG: tgr:Tgr7_1901 conjugal transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6 YP_004387475.1 KEGG: pap:PSPA7_3701 putative lipoprotein YP_004387476.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pap:PSPA7_3702 conjugal transfer protein TrbJ YP_004387477.1 KEGG: pap:PSPA7_3703 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; SMART: ATPase, AAA+ type, core YP_004387478.1 KEGG: pap:PSPA7_3704 conjugal transfer protein YP_004387479.1 PFAM: Conjugal transfer,TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC YP_004387480.1 KEGG: pap:PSPA7_3706 P-type conjugative transfer ATPase TrbB; TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E YP_004387481.1 PFAM: CopG-like DNA-binding; KEGG: dac:Daci_0439 CopG/DNA-binding domain-containing protein YP_004387482.1 PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: pau:PA14_30960 conjugal transfer coupling protein TraG YP_004387483.1 KEGG: pap:PSPA7_3722 putative lipoprotein YP_004387484.1 KEGG: bpt:Bpet2202 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004387485.1 PFAM: Monooxygenase, FAD-binding; KEGG: ami:Amir_4339 monooxygenase FAD-binding YP_004387486.1 KEGG: bbr:BB2379 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004387487.1 PFAM: ABC-2 type transporter; KEGG: abc:ACICU_01702 ABC-type multidrug transport system, permease component YP_004387488.1 PFAM: ABC-2 type transporter; KEGG: bpa:BPP1316 hypothetical protein YP_004387489.1 PFAM: ABC transporter-like; KEGG: pag:PLES_25911 ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004387490.1 PFAM: Secretion protein HlyD; KEGG: bbr:BB2383 HlyD family secretion protein YP_004387491.1 PFAM: Transcription regulator YbiH, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ppg:PputGB1_3284 TetR family transcriptional regulator YP_004387492.1 KEGG: sml:Smlt1841 hypothetical protein YP_004387493.1 KEGG: pap:PSPA7_3726 hypothetical protein YP_004387494.1 manually curated; KEGG: sml:Smlt1309 hypothetical protein YP_004387495.1 PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase YP_004387496.1 KEGG: rme:Rmet_1257 hypothetical protein YP_004387497.1 KEGG: bpt:Bpet2187 hypothetical protein YP_004387498.1 KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase; manually curated; PFAM: Cobyrinic acid a,c-diamide synthase YP_004387499.1 PFAM: Replication initiator protein A; KEGG: dia:Dtpsy_3526 putative replication initiator and transcription repressor protein YP_004387500.1 KEGG: ajs:Ajs_2652 hypothetical protein YP_004387501.1 PFAM: Protein of unknown function DUF2285; KEGG: dac:Daci_0459 hypothetical protein YP_004387502.1 manually curated; KEGG: rme:Rmet_1250 hypothetical protein YP_004387503.1 KEGG: rme:Rmet_1249 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004387504.1 KEGG: ajs:Ajs_2644 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF736 YP_004387505.1 SMART: HTH transcriptional regulator, ArsR; KEGG: bpt:Bpet1026 ArsR family transcriptional regulator YP_004387506.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_0488 glyoxalase/bleomycin resistance protein/dioxygenase YP_004387507.1 KEGG: bpt:Bpet1024 hypothetical protein; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004387508.1 KEGG: dac:Daci_0490 arsenical-resistance protein; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter YP_004387509.1 TIGRFAM: Arsenate reductase; KEGG: rpf:Rpic12D_0647 arsenate reductase; PFAM: Arsenate reductase-like YP_004387510.1 PFAM: Transcription regulator PadR N-terminal-like; KEGG: oan:Oant_4665 PadR-like family transcriptional regulator YP_004387511.1 KEGG: bav:BAV1573 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter YP_004387512.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: rme:Rmet_1246 GCN5-related N-acetyltransferase YP_004387513.1 KEGG: rme:Rmet_1245 ParB family protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease YP_004387514.1 PFAM: Protein of unknown function DUF932; KEGG: ajs:Ajs_2639 hypothetical protein YP_004387515.1 KEGG: dia:Dtpsy_1275 hypothetical protein YP_004387516.1 KEGG: rme:Rmet_3038 hypothetical protein YP_004387517.1 KEGG: tgr:Tgr7_1867 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758 YP_004387518.1 KEGG: ajs:Ajs_2635 hypothetical protein YP_004387519.1 manually curated; KEGG: dia:Dtpsy_1271 hypothetical protein YP_004387520.1 PFAM: MTH538 TIR-like domain; KEGG: ajs:Ajs_2632 hypothetical protein YP_004387521.1 PFAM: Uracil-DNA glycosylase-like; KEGG: ajs:Ajs_2631 hypothetical protein YP_004387522.1 KEGG: ajs:Ajs_2630 hypothetical protein YP_004387523.1 manually curated; KEGG: ajs:Ajs_2629 hypothetical protein YP_004387524.1 PFAM: MTH538 TIR-like domain; KEGG: ajs:Ajs_2628 hypothetical protein YP_004387525.1 KEGG: ajs:Ajs_2627 transcriptional regulator YP_004387526.1 KEGG: ajs:Ajs_2626 hypothetical protein YP_004387527.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein YP_004387528.1 KEGG: ajs:Ajs_2624 hypothetical protein YP_004387529.1 TIGRFAM: Excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; KEGG: dia:Dtpsy_1185 excinuclease ABC subunit C; SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1 YP_004387530.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: dia:Dtpsy_1186 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004387531.1 KEGG: dia:Dtpsy_1187 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004387532.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_1188 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004387533.1 PFAM: Extracellular ligand-binding receptor; KEGG: mno:Mnod_4450 extracellular ligand-binding receptor YP_004387534.1 PFAM: Crotonase, core; KEGG: mlo:mll1009 enoyl-CoA hydratase YP_004387535.1 KEGG: rxy:Rxyl_1851 phenylacetate-CoA ligase YP_004387536.1 KEGG: pol:Bpro_5271 carboxyl transferase; PFAM: Carboxyl transferase YP_004387537.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: pol:Bpro_5270 carbamoyl-phosphate synthase L chain, ATP-binding; SMART: Biotin carboxylase, C-terminal YP_004387538.1 KEGG: pol:Bpro_5269 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase YP_004387539.1 KEGG: rlt:Rleg2_6334 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004387540.1 PFAM: Transcription regulator YsiA, C-terminal; KEGG: azc:AZC_4590 transcriptional regulator YP_004387541.1 PFAM: Crotonase, core; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase YP_004387542.1 TIGRFAM: Cysteine synthase K/M; Cysteine synthase B; KEGG: dia:Dtpsy_2386 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004387543.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_2385 NUDIX hydrolase YP_004387544.1 PFAM: SirA-like; KEGG: dia:Dtpsy_2384 SirA family protein YP_004387545.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dia:Dtpsy_2383 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_004387546.1 TIGRFAM: Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; KEGG: ajs:Ajs_2896 valyl-tRNA synthetase YP_004387547.1 KEGG: pol:Bpro_1263 hypothetical protein YP_004387548.1 PFAM: Copper chaperone SCO1/SenC; KEGG: net:Neut_1585 hypothetical protein YP_004387549.1 PFAM: Cytochrome c, class I; KEGG: net:Neut_1584 cytochrome c, class I YP_004387550.1 PFAM: Cytochrome c oxidase, monohaem subunit/FixO; KEGG: net:Neut_1583 cytochrome c oxidase, mono-heme subunit/FixO YP_004387551.1 KEGG: net:Neut_1582 cytochrome c oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I YP_004387552.1 PFAM: HemY, N-terminal; KEGG: ajs:Ajs_2893 HemY domain-containing protein YP_004387553.1 PFAM: HemX; KEGG: ajs:Ajs_2892 protein of unknown function DUF513, HemX YP_004387554.1 KEGG: ajs:Ajs_2891 uroporphyrinogen-III synthase YP_004387555.1 PFAM: Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal domain; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; KEGG: dia:Dtpsy_2377 porphobilinogen deaminase YP_004387556.1 KEGG: dia:Dtpsy_2376 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase YP_004387557.1 PFAM: Flagellar transcriptional activator FlhC; KEGG: ajs:Ajs_2885 transcriptional activator FlhC YP_004387558.1 PFAM: Flagellar transcriptional activator; KEGG: ajs:Ajs_2884 flagellar transcriptional activator, FlhD subunit YP_004387559.1 KEGG: dia:Dtpsy_2370 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004387560.1 TIGRFAM: Peroxiredoxin; KEGG: xtr:100496295 alkyl hydroperoxide reductase subunit C-like; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal YP_004387561.1 TIGRFAM: Alkyl hydroperoxide reductase, subunit F; KEGG: xtr:100496451 alkyl hydroperoxide reductase subunit F-like; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glutaredoxin YP_004387562.1 KEGG: gpb:HDN1F_12050 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive YP_004387563.1 KEGG: mpt:Mpe_A2670 hypothetical protein YP_004387564.1 PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_1332 outer membrane efflux protein YP_004387565.1 KEGG: dia:Dtpsy_1144 hypothetical protein YP_004387566.1 KEGG: xtr:100489290 hypothetical protein LOC100489290 YP_004387567.1 KEGG: tmz:Tmz1t_2382 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004387568.1 KEGG: aav:Aave_1381 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted YP_004387569.1 TIGRFAM: Phosphoenolpyruvate synthase; KEGG: dia:Dtpsy_2366 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme YP_004387570.1 TIGRFAM: Sodium symporter small subunit, predicted; KEGG: ajs:Ajs_2878 hypothetical protein YP_004387571.1 KEGG: dia:Dtpsy_2364 calcium-binding EF-hand-containing protein; TIGRFAM: Sodium/solute symporter, VC2705 subfamily; PFAM: Sodium/solute symporter YP_004387572.1 KEGG: ajs:Ajs_2876 hypothetical protein YP_004387573.1 KEGG: rpi:Rpic_2638 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004387574.1 KEGG: ppw:PputW619_3351 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004387575.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0182 extracellular ligand-binding receptor YP_004387576.1 KEGG: rpi:Rpic_2632 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004387577.1 KEGG: rpi:Rpic_2631 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004387578.1 KEGG: rpi:Rpic_2630 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004387579.1 TIGRFAM: Thiolase; KEGG: rpi:Rpic_2629 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004387580.1 PFAM: Crotonase, core; KEGG: rpi:Rpic_2628 enoyl-CoA hydratase/isomerase YP_004387581.1 KEGG: rpi:Rpic_2627 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004387582.1 SMART: Elongation factor P, C-terminal; TIGRFAM: Translation elongation factor P; KEGG: xtr:100493038 elongation factor P-like; HAMAP: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central YP_004387583.1 KEGG: ajs:Ajs_2874 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP015557; PFAM: Uncharacterised conserved protein UCP015557 YP_004387584.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_2873 LysR family transcriptional regulator YP_004387585.1 KEGG: dia:Dtpsy_2359 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004387586.1 KEGG: dia:Dtpsy_2358 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase YP_004387587.1 KEGG: dia:Dtpsy_2357 hypothetical protein YP_004387588.1 KEGG: ajs:Ajs_2869 hypothetical protein YP_004387589.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_0157 L-carnitine dehydratase/bile acid-inducible YP_004387590.1 KEGG: xtr:100493857 uncharacterized protein yfdE-like; PFAM: CoA-transferase family III YP_004387591.1 KEGG: xtr:100494035 short-chain specific acyl-CoA dehydrogenase, mitochondrial-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004387592.1 KEGG: aav:Aave_2969 substrate-binding region of ABC-type glycine betaine transport system YP_004387593.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: xtr:100494207 probable ABC transporter permease protein BruAb2_1124-like YP_004387594.1 PFAM: ABC transporter-like; KEGG: xtr:100494366 uncharacterized ABC transporter ATP-binding protein MJ0412-like; SMART: ATPase, AAA+ type, core YP_004387595.1 TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: aav:Aave_2966 histidine utilization repressor; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004387596.1 PFAM: Phenylalanine/histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; HAMAP: Histidine ammonia-lyase; KEGG: aav:Aave_2965 histidine ammonia-lyase YP_004387597.1 TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: ctt:CtCNB1_0165 transcriptional regulator, histidine; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004387598.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: ctt:CtCNB1_0166 cytosine/purines/uracil permease YP_004387599.1 TIGRFAM: Urocanase; KEGG: dac:Daci_0150 urocanate hydratase; PFAM: Urocanase YP_004387600.1 KEGG: pol:Bpro_1041 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal YP_004387601.1 KEGG: pol:Bpro_1040 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004387602.1 KEGG: pol:Bpro_1039 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004387603.1 PFAM: ABC transporter-like; KEGG: pol:Bpro_1038 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004387604.1 PFAM: Uncharacterised protein family HutD; KEGG: aav:Aave_2962 hypothetical protein YP_004387605.1 TIGRFAM: Imidazolonepropionase; KEGG: pol:Bpro_1035 imidazolonepropionase; PFAM: Amidohydrolase 1 YP_004387606.1 KEGG: dac:Daci_0155 N-formimino-L-glutamate deiminase; TIGRFAM: Formiminoglutamate deiminase; PFAM: Amidohydrolase 1 YP_004387607.1 KEGG: aav:Aave_2959 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate deformylase; PFAM: N-formylglutamate amidohydrolase YP_004387608.1 TIGRFAM: Glutamate racemase; KEGG: ajs:Ajs_2867 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_004387609.1 PFAM: Protein of unknown function DUF938; KEGG: dia:Dtpsy_2352 protein of unknown function DUF938 YP_004387610.1 KEGG: aav:Aave_2080 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: Aldehyde-lyase domain YP_004387611.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: dac:Daci_2346 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004387612.1 PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; KEGG: ctt:CtCNB1_3469 outer membrane protein precursor; SMART: SAF domain YP_004387613.1 KEGG: ctt:CtCNB1_3468 TctC YP_004387614.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_2084 LysR family transcriptional regulator YP_004387615.1 PFAM: Patatin/Phospholipase A2-related; KEGG: dac:Daci_3706 patatin YP_004387616.1 TIGRFAM: Tartrate dehydrogenase; KEGG: aav:Aave_2087 tartrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004387617.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2361 LysR family transcriptional regulator YP_004387618.1 KEGG: dia:Dtpsy_0973 hypothetical protein YP_004387620.1 KEGG: abb:ABBFA_001155 transcriptional regulatory protein QseB YP_004387621.1 KEGG: pol:Bpro_4958 histone-like DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004387622.1 KEGG: pol:Bpro_5021 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004387623.1 KEGG: tmz:Tmz1t_1027 transcriptional regulator, LysR family; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004387624.1 SMART: Polyketide synthase/Fatty acid synthase, KR; TIGRFAM: Acetoacetyl-CoA reductase; KEGG: rme:Rmet_1333 acetoacetyl-CoA reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004387625.1 KEGG: tmz:Tmz1t_1024 hypothetical protein YP_004387626.1 PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; KEGG: tmz:Tmz1t_1023 poly-beta-hydroxybutyrate polymerase domain protein YP_004387627.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tmz:Tmz1t_1022 transcriptional regulator, TetR family YP_004387628.1 KEGG: tmz:Tmz1t_1021 hypothetical protein YP_004387629.1 PFAM: Secretion protein HlyD; KEGG: tmz:Tmz1t_1020 hypothetical protein YP_004387630.1 PFAM: ABC transporter-like; KEGG: tmz:Tmz1t_1019 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004387631.1 PFAM: ABC-2 type transporter; KEGG: tmz:Tmz1t_1018 ABC-2 type transporter YP_004387632.1 PFAM: ABC-2 type transporter; KEGG: tmz:Tmz1t_1017 ABC-2 type transporter YP_004387633.1 KEGG: rme:Rmet_1267 RND efflux system outer membrane lipoprotein NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004387634.1 PFAM: Protein of unknown function DUF2892; KEGG: tmz:Tmz1t_1015 hypothetical protein YP_004387635.1 KEGG: rme:Rmet_1266 beta-lactamase-like protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like YP_004387636.1 KEGG: rme:Rmet_1265 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG YP_004387637.1 PFAM: Protein of unknown function DUF2219; KEGG: rme:Rmet_1261 hypothetical protein YP_004387638.1 KEGG: tmz:Tmz1t_1007 hypothetical protein YP_004387639.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: tmz:Tmz1t_1002 transcriptional regulator, LysR family YP_004387640.1 KEGG: tmz:Tmz1t_1001 hypothetical protein YP_004387641.1 PFAM: Prophage CP4-57 regulatory; KEGG: tmz:Tmz1t_1000 phage transcriptional regulator, AlpA YP_004387642.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: tmz:Tmz1t_0999 cobyrinic acid ac-diamide synthase YP_004387643.1 KEGG: tmz:Tmz1t_0998 hypothetical protein YP_004387644.1 KEGG: tmz:Tmz1t_0997 hypothetical protein; manually curated; TIGRFAM: Integrating conjugative element, PFGI-1, ParB YP_004387645.1 KEGG: mpt:Mpe_A2335 hypothetical protein YP_004387646.1 KEGG: mpt:Mpe_A2336 hypothetical protein YP_004387647.1 KEGG: rsl:RPSI07_1104 hypothethical protein YP_004387648.1 KEGG: mpt:Mpe_A2339 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4669; PFAM: Integrating conjugative element protein, PFL4669 YP_004387649.1 KEGG: tmz:Tmz1t_0992 hypothetical protein YP_004387650.1 PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein YP_004387651.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger YP_004387652.1 KEGG: tmz:Tmz1t_0989 hypothetical protein YP_004387653.1 KEGG: ajs:Ajs_2230 hypothetical protein YP_004387654.1 KEGG: ajs:Ajs_2229 hypothetical protein YP_004387655.1 KEGG: tmz:Tmz1t_0980 hypothetical protein YP_004387656.1 KEGG: tmz:Tmz1t_0979 hypothetical protein YP_004387657.1 KEGG: mpt:Mpe_A2362 hypothetical protein YP_004387658.1 KEGG: mpt:Mpe_A2363 hypothetical protein YP_004387659.1 KEGG: mpt:Mpe_A2364 hypothetical protein YP_004387660.1 KEGG: tmz:Tmz1t_0975 hypothetical protein YP_004387661.1 KEGG: tmz:Tmz1t_0974 hypothetical protein YP_004387662.1 KEGG: ajs:Ajs_2221 hypothetical protein YP_004387663.1 SMART: DEAD-like helicase, N-terminal; KEGG: tmz:Tmz1t_0972 DEAD-like helicase YP_004387664.1 PFAM: Chromate resistance exported protein; KEGG: har:HEAR0891 putative chromate resistance protein YP_004387665.1 KEGG: sfu:Sfum_0092 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter YP_004387666.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; KEGG: rme:Rmet_6201 manganese and iron superoxide dismutase YP_004387667.1 PFAM: Integrase, catalytic core; KEGG: xom:XOO_1208 transposase YP_004387668.1 PFAM: Transposase IS3/IS911family; KEGG: azl:AZL_f00580 transposase YP_004387669.1 PFAM: Uncharacterised protein family, LppY/LpqO; KEGG: pop:POPTR_594759 hypothetical protein YP_004387670.1 PFAM: Chromate resistance exported protein; KEGG: bph:Bphy_5141 ChrB protein YP_004387671.1 PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_6018 major facilitator superfamily MFS_1 YP_004387672.1 KEGG: gbm:Gbem_2672 winged-helix transcriptional response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004387673.1 TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; KEGG: gbm:Gbem_2673 HAMP domain-containing sensor histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004387674.1 PFAM: NHL repeat; KEGG: phe:Phep_1359 NHL repeat containing protein YP_004387675.1 KEGG: nwa:Nwat_1254 hypothetical protein YP_004387676.1 KEGG: mno:Mnod_2229 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004387677.1 KEGG: bvi:Bcep1808_7485 hypothetical protein YP_004387678.1 KEGG: mno:Mnod_2227 hypothetical protein YP_004387679.1 KEGG: bvi:Bcep1808_7486 hypothetical protein YP_004387680.1 TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: tmz:Tmz1t_0968 hypothetical protein YP_004387681.1 KEGG: mpt:Mpe_A2376 hypothetical protein YP_004387682.1 TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: ajs:Ajs_2211 putative secreted protein YP_004387683.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: mpt:Mpe_A2378 hypothetical protein YP_004387684.1 TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: mpt:Mpe_A2379 hypothetical protein YP_004387685.1 KEGG: tmz:Tmz1t_0963 hypothetical protein; manually curated; TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1 YP_004387686.1 TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: mpt:Mpe_A2381 hypothetical protein YP_004387687.1 KEGG: cli:Clim_0127 hypothetical protein YP_004387688.1 PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: eba:ebA2417 hypothetical protein YP_004387689.1 PFAM: DNA methylase N-4/N-6; KEGG: bpm:BURPS1710b_3656 adenine specific DNA methylase Mod YP_004387690.1 PFAM: Abortive phage infection; KEGG: pph:Ppha_0341 hypothetical protein YP_004387691.1 PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: alv:Alvin_2786 peptidase S8 and S53 subtilisin kexin sedolisin YP_004387692.1 KEGG: alv:Alvin_2785 AAA ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004387693.1 manually curated; PFAM: SNF2-related; Helicase, C-terminal; KEGG: tbd:Tbd_0933 DEAD/DEAH box helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004387694.1 KEGG: ajs:Ajs_2531 phage transcriptional regulator, AlpA; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory YP_004387695.1 KEGG: tmz:Tmz1t_0956 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD YP_004387696.1 TIGRFAM: Protein of unknown function DUF3262; KEGG: ajs:Ajs_2193 hypothetical protein YP_004387697.1 TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: tmz:Tmz1t_0954 hypothetical protein YP_004387698.1 TIGRFAM: Protein of unknown function DUF3487; KEGG: ajs:Ajs_2191 hypothetical protein YP_004387699.1 TIGRFAM: Protein of unknown function DUF2895; KEGG: mpt:Mpe_A2390 hypothetical protein YP_004387700.1 TIGRFAM: Integrating conjugative element protein, PFL4704; KEGG: ajs:Ajs_2189 hypothetical protein YP_004387701.1 TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: mpt:Mpe_A2392 hypothetical protein YP_004387702.1 TIGRFAM: Conjugative transfer region lipoprotein; KEGG: mpt:Mpe_A2393 hypothetical protein YP_004387703.1 TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: tmz:Tmz1t_0948 hypothetical protein YP_004387704.1 KEGG: tmz:Tmz1t_0947 hypothetical protein YP_004387705.1 KEGG: ajs:Ajs_2184 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758 YP_004387706.1 KEGG: app:CAP2UW1_2945 hypothetical protein YP_004387707.1 KEGG: app:CAP2UW1_2946 N-6 DNA methylase YP_004387708.1 KEGG: app:CAP2UW1_2947 hypothetical protein YP_004387709.1 KEGG: ajs:Ajs_2183 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4709; PFAM: Integrating conjugative element protein, PFL4709 YP_004387710.1 KEGG: eba:ebA2511 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4710; PFAM: Integrating conjugative element protein, PFL4710 YP_004387711.1 TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: ajs:Ajs_2181 hypothetical protein YP_004387712.1 KEGG: ajs:Ajs_2180 hypothetical protein YP_004387713.1 KEGG: ajs:Ajs_2179 hypothetical protein YP_004387714.1 PFAM: Protein of unknown function DUF3742; KEGG: ajs:Ajs_2178 hypothetical protein YP_004387715.1 KEGG: mpt:Mpe_A2403 hypothetical protein YP_004387716.1 PFAM: Protein of unknown function DUF1814; KEGG: ajs:Ajs_2176 hypothetical protein YP_004387717.1 KEGG: ajs:Ajs_2175 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal YP_004387718.1 KEGG: mpt:Mpe_A2406 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004387719.1 PFAM: LysR, substrate-binding; KEGG: mpt:Mpe_A2407 transcriptional regulator YP_004387720.1 SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; TIGRFAM: Peptidase A8, signal peptidase II; KEGG: kpu:pK2044_00535 lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; PFAM: Peptidase A8, signal peptidase II; Phosphatidic acid phosphatase type 2/haloperoxidase YP_004387721.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: tin:Tint_3215 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004387722.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: tgr:Tgr7_2809 putative transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR YP_004387723.1 PFAM: Integrase, catalytic core, phage; KEGG: mpt:Mpe_A2408 integrase (int) YP_004387724.1 KEGG: pna:Pnap_4574 hypothetical protein YP_004387725.1 KEGG: xfa:XF2733 hypothetical protein YP_004387726.1 KEGG: tmz:Tmz1t_0049 hypothetical protein YP_004387727.1 KEGG: tmz:Tmz1t_0051 conserved hypothetical cytosolic protein YP_004387728.1 KEGG: xfm:Xfasm12_2281 hypothetical protein YP_004387729.1 PFAM: Transposase IS3/IS911family; KEGG: rpi:Rpic_2066 transposase IS3/IS911 family protein YP_004387730.1 PFAM: Integrase, catalytic core; KEGG: rde:RD1_3452 transposase, putative YP_004387731.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_5293 TetR family transcriptional regulator YP_004387732.1 KEGG: axy:AXYL_02788 acyl-CoA dehydrogenase 1; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004387733.1 KEGG: reu:Reut_A3087 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004387734.1 PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like YP_004387735.1 KEGG: pol:Bpro_5277 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004387736.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: eba:ebB200 putative thiolase subunit YP_004387737.1 KEGG: reh:H16_A1297 acetyl-CoA acetyltransferase YP_004387738.1 KEGG: pol:Bpro_5250 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal YP_004387739.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: eba:ebA5300 putative dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR YP_004387740.1 KEGG: bpt:Bpet1210 acetyl-CoA synthetase; PFAM: CoA-binding; SMART: CoA-binding YP_004387741.1 PFAM: Crotonase, core; KEGG: dac:Daci_0194 enoyl-CoA hydratase/isomerase YP_004387742.1 KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004387743.1 KEGG: reu:Reut_B4356 hypothetical protein YP_004387744.1 KEGG: rme:Rmet_3671 extra-cytoplasmic solute receptor YP_004387745.1 KEGG: cti:RALTA_B1677 conserved hypothetical protein; UPF0065 YP_004387746.1 KEGG: pol:Bpro_5282 MaoC-like dehydratase; PFAM: MaoC-like dehydratase YP_004387748.1 KEGG: bbr:BB4339 hypothetical protein YP_004387749.1 KEGG: pol:Bpro_5250 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal YP_004387750.1 KEGG: azo:azo2492 electron transfer flavoprotein subunit beta; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004387751.1 KEGG: tmz:Tmz1t_0422 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004387752.1 PFAM: Crotonase, core; KEGG: bxe:Bxe_C0269 enoyl-CoA hydratase YP_004387753.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bph:Bphy_0157 2-nitropropane dioxygenase NPD YP_004387754.1 KEGG: vap:Vapar_0801 hypothetical protein YP_004387755.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pla:Plav_2055 alpha/beta hydrolase fold YP_004387756.1 manually curated; KEGG: mau:Micau_2811 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004387757.1 KEGG: rpa:RPA4552 4-hydroxybutyrate-CoA transferase/hydrolase YP_004387758.1 PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C7308 MmgE/PrpD YP_004387759.1 KEGG: bbr:BB3950 hypothetical protein YP_004387760.1 KEGG: bbr:BB4584 hypothetical protein; PFAM: CoA-transferase family III YP_004387761.1 KEGG: bur:Bcep18194_C7492 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004387762.1 PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7491 MaoC-like dehydratase YP_004387763.1 KEGG: bpt:Bpet1156 hypothetical protein YP_004387764.1 KEGG: bpt:Bpet1157 putative secreted protein YP_004387765.1 PFAM: Crotonase, core; KEGG: bpt:Bpet1158 putative enoyl-CoA hydratase/isomerase YP_004387766.1 PFAM: Crotonase, core; KEGG: axy:AXYL_06657 enoyl-CoA hydratase/isomerase family protein 35 YP_004387767.1 KEGG: axy:AXYL_06658 transcriptional regulator family protein 40; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004387768.1 KEGG: axy:AXYL_06659 transcriptional regulator family protein 41; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004387769.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: bpt:Bpet1154 putative biotin carboxylase subunit of propionyl-CoA carboxylase; SMART: Biotin carboxylase, C-terminal YP_004387770.1 KEGG: bpt:Bpet1153 putative propionyl-CoA carboxylase beta subunit; PFAM: Carboxyl transferase YP_004387771.1 KEGG: bpt:Bpet1152 hypothetical protein YP_004387772.1 PFAM: Protein of unknown function DUF1446; KEGG: bpt:Bpet1151 hypothetical protein YP_004387773.1 KEGG: reh:H16_B1907 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004387774.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004387775.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10 YP_004387776.1 KEGG: tmz:Tmz1t_0992 hypothetical protein YP_004387777.1 PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein YP_004387778.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger YP_004387779.1 KEGG: mpt:Mpe_A2343 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like; GCN5-related N-acetyltransferase (GNAT) domain YP_004387780.1 KEGG: mpt:Mpe_A2344 ACR3 permease; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter YP_004387781.1 KEGG: mpt:Mpe_A2345 arsenate reductase, putative; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004387782.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A2346 hypothetical protein YP_004387783.1 SMART: HTH transcriptional regulator, ArsR; KEGG: mpt:Mpe_A2347 ArsR family transcriptional regulator YP_004387784.1 KEGG: rpf:Rpic12D_0655 hypothetical protein YP_004387785.1 KEGG: rpf:Rpic12D_0656 hypothetical protein YP_004387786.1 KEGG: tau:Tola_2412 hypothetical protein YP_004387787.1 KEGG: rpf:Rpic12D_0658 hypothetical protein YP_004387788.1 KEGG: rpf:Rpic12D_0659 hypothetical protein YP_004387789.1 KEGG: ajs:Ajs_2227 hypothetical protein YP_004387790.1 KEGG: rpf:Rpic12D_0661 hypothetical protein YP_004387791.1 KEGG: rpf:Rpic12D_0662 hypothetical protein YP_004387792.1 KEGG: rpf:Rpic12D_0663 hypothetical protein YP_004387793.1 KEGG: mpt:Mpe_A2364 hypothetical protein YP_004387794.1 KEGG: tgr:Tgr7_2834 hypothetical protein YP_004387795.1 PFAM: Protein of unknown function DUF932; KEGG: rpf:Rpic12D_0664 protein of unknown function DUF932 YP_004387796.1 KEGG: rpf:Rpic12D_0665 hypothetical protein YP_004387797.1 KEGG: rpf:Rpic12D_0666 hypothetical protein YP_004387798.1 KEGG: tmz:Tmz1t_0973 hypothetical protein YP_004387799.1 SMART: DEAD-like helicase, N-terminal; KEGG: rpf:Rpic12D_0667 DEAD-like helicase YP_004387800.1 TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: rpf:Rpic12D_0668 hypothetical protein YP_004387801.1 KEGG: rpf:Rpic12D_0669 hypothetical protein YP_004387802.1 TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: rpf:Rpic12D_0670 putative secreted protein YP_004387803.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: rpf:Rpic12D_0671 lytic transglycosylase catalytic YP_004387804.1 TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: rpf:Rpic12D_0672 hypothetical protein YP_004387805.1 TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1; KEGG: rpf:Rpic12D_0673 hypothetical protein YP_004387806.1 TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: rpf:Rpic12D_0674 hypothetical protein YP_004387807.1 KEGG: rpf:Rpic12D_0675 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD YP_004387808.1 TIGRFAM: Protein of unknown function DUF3262; KEGG: rpf:Rpic12D_0676 hypothetical protein YP_004387809.1 TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: rpf:Rpic12D_0677 hypothetical protein YP_004387810.1 TIGRFAM: Protein of unknown function DUF3487; KEGG: rpf:Rpic12D_0678 hypothetical protein YP_004387811.1 TIGRFAM: Protein of unknown function DUF2895; KEGG: rpf:Rpic12D_0679 hypothetical protein YP_004387812.1 TIGRFAM: Integrating conjugative element protein, PFL4704; KEGG: rpf:Rpic12D_0680 hypothetical protein YP_004387813.1 TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: rpf:Rpic12D_0681 hypothetical protein YP_004387814.1 TIGRFAM: Conjugative transfer region lipoprotein; KEGG: rpf:Rpic12D_0682 hypothetical protein YP_004387815.1 TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: rpf:Rpic12D_0683 hypothetical protein YP_004387816.1 PFAM: DSBA-like thioredoxin domain; KEGG: rpf:Rpic12D_0684 DsbA oxidoreductase YP_004387817.1 KEGG: net:Neut_0078 hypothetical protein YP_004387818.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: maq:Maqu_1250 TetR family transcriptional regulator YP_004387819.1 KEGG: ppd:Ppro_3851 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004387820.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: ppd:Ppro_3850 hypothetical protein YP_004387821.1 PFAM: ABC transporter-like; KEGG: ppd:Ppro_3849 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004387822.1 KEGG: ppd:Ppro_3848 hypothetical protein YP_004387823.1 KEGG: maq:Maqu_1255 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004387824.1 PFAM: Integrase, catalytic core; Transposase-like, Mu, C-terminal; KEGG: bxe:Bxe_C1173 integrase TniA YP_004387825.1 KEGG: bxe:Bxe_C1174 transposition protein TniB; PFAM: Bacterial TniB; SMART: ATPase, AAA+ type, core YP_004387826.1 KEGG: bxe:Bxe_C1175 transposition protein TniQ; manually curated; PFAM: TniQ YP_004387827.1 KEGG: shn:Shewana3_1247 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02391; PFAM: Conserved hypothetical protein CHP02391 YP_004387828.1 PFAM: Aminoglycoside phosphotransferase; KEGG: bxe:Bxe_C1178 hypothetical protein YP_004387829.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: art:Arth_4258 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004387830.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: art:Arth_4257 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004387831.1 KEGG: bvi:Bcep1808_7475 hypothetical protein YP_004387832.1 PFAM: Uncharacterised protein family, LppY/LpqO; KEGG: pop:POPTR_594759 hypothetical protein YP_004387833.1 KEGG: bxe:Bxe_C1203 hypothetical protein YP_004387834.1 PFAM: Chromate resistance exported protein; KEGG: bxe:Bxe_C1204 hypothetical protein YP_004387835.1 KEGG: bxe:Bxe_C1205 putative superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; SMART: Rhodanese-like YP_004387836.1 KEGG: bxe:Bxe_C1206 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter YP_004387837.1 PFAM: Chromate resistance exported protein; KEGG: bxe:Bxe_C1207 putative chromate resistance protein YP_004387838.1 KEGG: bxe:Bxe_C1209 putative resolvase; PFAM: Resolvase, N-terminal; Protein of unknown function DUF932; SMART: Resolvase, N-terminal YP_004387839.1 manually curated; KEGG: bxe:Bxe_C1210 transposon modulator protein YP_004387840.1 PFAM: MerE; KEGG: bxe:Bxe_C1211 putative mercury resistance protein YP_004387841.1 TIGRFAM: Mercuric resistence transcriptional repressor protein MerD; PFAM: HTH transcriptional regulator, MerR; KEGG: bxe:Bxe_C1212 transcriptional regulator MerD; SMART: HTH transcriptional regulator, MerR YP_004387842.1 TIGRFAM: Mercury reductase, MerA; KEGG: bxe:Bxe_C1213 putative mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004387843.1 KEGG: mms:mma_1750 putative mercury transport protein MerC YP_004387844.1 KEGG: mms:mma_1751 mercuric transport periplasmic binding protein; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein YP_004387845.1 PFAM: Mercuric transport protein MerT; KEGG: bxe:Bxe_C1216 putative mercuric transport protein YP_004387846.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: bxe:Bxe_C1217 putative transcriptional regulator MerR; SMART: HTH transcriptional regulator, MerR YP_004387847.1 KEGG: rpf:Rpic12D_0686 protein of unknown function DUF1525; TIGRFAM: Integrating conjugative element protein, PFL4709; PFAM: Integrating conjugative element protein, PFL4709 YP_004387848.1 KEGG: rpf:Rpic12D_0687 protein of unknown function DUF1527; TIGRFAM: Integrating conjugative element protein, PFL4710; PFAM: Integrating conjugative element protein, PFL4710 YP_004387849.1 TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: rpf:Rpic12D_0688 hypothetical protein YP_004387850.1 KEGG: rpf:Rpic12D_0689 hypothetical protein YP_004387851.1 KEGG: rpf:Rpic12D_0690 hypothetical protein YP_004387852.1 KEGG: rpf:Rpic12D_0691 hypothetical protein YP_004387853.1 KEGG: dac:Daci_4188 hypothetical protein YP_004387854.1 TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: dac:Daci_4189 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted YP_004387855.1 KEGG: rpf:Rpic12D_0694 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal YP_004387856.1 KEGG: rpf:Rpic12D_0695 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004387857.1 PFAM: LysR, substrate-binding; KEGG: rpf:Rpic12D_0696 transcriptional regulator, LysR family YP_004387858.1 PFAM: Integrase, catalytic core, phage; KEGG: dac:Daci_4139 integrase family protein YP_004387859.1 KEGG: ajs:Ajs_1664 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2 YP_004387860.1 KEGG: dia:Dtpsy_2037 hypothetical protein YP_004387861.1 TIGRFAM: Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase; KEGG: dia:Dtpsy_2036 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related YP_004387862.1 manually curated; PFAM: Cystathionine beta-synthase, core; HPP; KEGG: ajs:Ajs_1669 CBS domain-containing protein; SMART: Cystathionine beta-synthase, core YP_004387863.1 KEGG: dia:Dtpsy_2034 translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type YP_004387864.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: ajs:Ajs_4119 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004387865.1 PFAM: Protein of unknown function DUF1624; KEGG: ajs:Ajs_1672 hypothetical protein YP_004387866.1 TIGRFAM: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_1390 integration host factor, beta subunit; SMART: Histone-like bacterial DNA-binding protein YP_004387867.1 TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA-binding domain; KEGG: dia:Dtpsy_1391 30S ribosomal protein S1; SMART: RNA-binding domain, S1 YP_004387868.1 PFAM: Enolpyruvate transferase domain; Cytidylate kinase domain; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; Cytidylate kinase; HAMAP: Cytidylate kinase; 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: dia:Dtpsy_1392 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase YP_004387869.1 KEGG: dia:Dtpsy_1393 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase YP_004387870.1 TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; KEGG: dia:Dtpsy_1394 chorismate mutase; SMART: Chorismate mutase YP_004387871.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Phosphoserine aminotransferase, subgroup; HAMAP: Phosphoserine aminotransferase; KEGG: dia:Dtpsy_1395 phosphoserine aminotransferase YP_004387872.1 SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: ajs:Ajs_2464 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004387873.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_1397 OmpA/MotB domain protein YP_004387874.1 TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; KEGG: dia:Dtpsy_1398 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11 YP_004387875.1 TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: ajs:Ajs_2461 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004387876.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bvi:Bcep1808_7210 LysR family transcriptional regulator YP_004387877.1 KEGG: bvi:Bcep1808_7212 phosphonate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004387878.1 KEGG: mms:mma_3042 phosphonate ABC-type transport system permease protein; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004387879.1 TIGRFAM: Phosphonate-binding periplasmic protein; KEGG: mms:mma_3041 phosphonate ABC-type transport system substrate-binding protein YP_004387880.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, phosphonate import, PhnC; KEGG: mms:mma_3040 phosphonate ABC-type transport system ATP-binding protein; PFAM: ABC transporter-like YP_004387881.1 PFAM: Domain of unknown function DUF88; KEGG: cvi:CV_0373 hypothetical protein YP_004387882.1 KEGG: rsl:RPSI07_0201 putative bacteriophage-related protein YP_004387883.1 KEGG: rsl:RPSI07_0202 putative bacteriophage-related protein YP_004387884.1 KEGG: nde:NIDE0070 putative site-specific recombinase, resolvase family (phage related); PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004387885.1 KEGG: mfa:Mfla_1156 hypothetical protein YP_004387886.1 KEGG: mfa:Mfla_1157 hypothetical protein YP_004387887.1 KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004387888.1 KEGG: nde:NIDE0076 hypothetical protein YP_004387889.1 KEGG: nde:NIDE0077 hypothetical protein YP_004387890.1 KEGG: nde:NIDE0078 hypothetical protein YP_004387891.1 KEGG: mca:MCA2640 hypothetical protein YP_004387892.1 KEGG: mms:mma_2689 hypothetical protein YP_004387893.1 KEGG: nde:NIDE0081 hypothetical protein YP_004387894.1 KEGG: dia:Dtpsy_3225 hypothetical protein YP_004387895.1 PFAM: Uncharacterised protein domain P63C; KEGG: nde:NIDE0083 hypothetical protein YP_004387896.1 KEGG: nde:NIDE0084 hypothetical protein YP_004387897.1 KEGG: dia:Dtpsy_3223 hypothetical protein YP_004387898.1 KEGG: nde:NIDE0086 hypothetical protein YP_004387899.1 TIGRFAM: DNA primase, phage/plasmid; PFAM: Phage/plasmid primase, P4, C-terminal; KEGG: dia:Dtpsy_3221 hypothetical protein; SMART: Phage/plasmid primase, P4, C-terminal YP_004387900.1 KEGG: dia:Dtpsy_3220 hypothetical protein YP_004387901.1 KEGG: mms:mma_2698 hypothetical protein YP_004387902.1 KEGG: sml:Smlt1883 hypothetical protein YP_004387903.1 KEGG: dia:Dtpsy_3217 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease YP_004387904.1 KEGG: dia:Dtpsy_3216 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease YP_004387905.1 KEGG: mms:mma_2759 hypothetical protein YP_004387906.1 KEGG: mms:mma_2762 hypothetical protein YP_004387907.1 KEGG: dia:Dtpsy_3211 hypothetical protein YP_004387908.1 KEGG: sml:Smlt1874 hypothetical protein YP_004387909.1 PFAM: Phage terminase GpA; KEGG: dia:Dtpsy_3209 terminase GpA YP_004387910.1 KEGG: mms:mma_2706 hypothetical protein YP_004387911.1 KEGG: mms:mma_2767 hypothetical protein YP_004387912.1 KEGG: rsl:RPSI07_0240 hypothetical protein YP_004387913.1 manually curated; TIGRFAM: Phage portal protein, lambda; KEGG: dia:Dtpsy_3207 phage portal protein, lambda family; PFAM: Phage portal protein, lambda YP_004387914.1 PFAM: Peptidase S49; KEGG: dia:Dtpsy_3206 peptidase S49 YP_004387915.1 KEGG: dia:Dtpsy_3205 hypothetical protein YP_004387916.1 KEGG: dia:Dtpsy_3204 hypothetical protein YP_004387917.1 KEGG: dia:Dtpsy_3203 hypothetical protein YP_004387918.1 KEGG: dia:Dtpsy_3202 signal peptide protein YP_004387919.1 KEGG: dia:Dtpsy_3201 hypothetical protein YP_004387920.1 KEGG: dia:Dtpsy_3200 hypothetical protein YP_004387921.1 KEGG: dia:Dtpsy_3199 hypothetical protein YP_004387922.1 manually curated; KEGG: rso:RSc0865 hypothetical protein YP_004387923.1 KEGG: dia:Dtpsy_3198 hypothetical protein YP_004387924.1 TIGRFAM: Tape measure domain; KEGG: dia:Dtpsy_3197 phage tape measure protein YP_004387925.1 KEGG: dia:Dtpsy_3196 hypothetical protein YP_004387926.1 KEGG: dia:Dtpsy_3195 hypothetical protein YP_004387927.1 KEGG: dia:Dtpsy_3194 hypothetical protein YP_004387928.1 KEGG: mca:MCA2674 hypothetical protein YP_004387929.1 KEGG: mca:MCA2675 hypothetical protein YP_004387930.1 KEGG: dia:Dtpsy_3191 hypothetical protein YP_004387931.1 KEGG: dia:Dtpsy_3190 hypothetical protein YP_004387932.1 KEGG: mms:mma_2786 hypothetical protein YP_004387933.1 KEGG: nde:NIDE0123 hypothetical protein YP_004387934.1 PFAM: Glycoside hydrolase, family 24; KEGG: sml:Smlt1851 putative glycosidase YP_004387935.1 KEGG: nde:NIDE0125 hypothetical protein YP_004387936.1 KEGG: rso:RSc3214 hypothetical protein YP_004387937.1 PFAM: Protein of unknown function DUF511; KEGG: dno:DNO_0218 hypothetical protein YP_004387938.1 KEGG: bav:BAV0365 hypothetical protein YP_004387939.1 manually curated; KEGG: pol:Bpro_1539 hypothetical protein YP_004387940.1 KEGG: xfm:Xfasm12_2267 type I restriction-modification system endonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal YP_004387941.1 KEGG: mca:MCA0277 hypothetical protein YP_004387942.1 PFAM: DNA methylase, adenine-specific; KEGG: xfn:XfasM23_2177 N-6 DNA methylase YP_004387943.1 PFAM: Domain of unknown function DUF262; Domain of unknown function DUF1524 RloF; KEGG: gca:Galf_1217 hypothetical protein YP_004387944.1 KEGG: vei:Veis_2419 hypothetical protein YP_004387945.1 PFAM: Glycoside hydrolase, family 24; KEGG: mms:mma_2788 phage-related lysozyme YP_004387946.1 KEGG: mfa:Mfla_1158 DegP2 peptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF YP_004387947.1 PFAM: Peptidase M48; KEGG: mfa:Mfla_1159 peptidase M48, Ste24p YP_004387948.1 KEGG: mfa:Mfla_1160 hypothetical protein YP_004387949.1 TIGRFAM: Thioredoxin; KEGG: dde:Dde_3416 thioredoxin; PFAM: Thioredoxin domain YP_004387950.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: dde:Dde_3415 FtsH-2 peptidase; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular YP_004387951.1 KEGG: rpf:Rpic12D_0625 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004387952.1 KEGG: mfa:Mfla_1170 ATPase AAA-2; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core YP_004387953.1 PFAM: Heat shock protein Hsp20; KEGG: rpf:Rpic12D_0629 heat shock protein HSP20 YP_004387954.1 manually curated; TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: mfa:Mfla_1172 phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory YP_004387955.1 PFAM: Protein of unknown function DUF159; KEGG: tin:Tint_2914 protein of unknown function DUF159 YP_004387956.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: tin:Tint_2913 peptidase S24/S26A/S26B, conserved region YP_004387957.1 KEGG: tin:Tint_2912 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like YP_004387958.1 KEGG: mca:MCA2632 hypothetical protein YP_004387959.1 KEGG: mca:MCA2633 prophage LambdaMc01, site-specific recombinase resolvase family protein, truncation YP_004387960.1 KEGG: mca:MCA2634 prophage LambdaMc01, site-specific recombinase resolvase family protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004387961.1 PFAM: Protein of unknown function DUF2924; KEGG: mca:MCA2635 hypothetical protein YP_004387962.1 KEGG: mca:MCA2636 hypothetical protein YP_004387963.1 KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004387964.1 KEGG: nde:NIDE0076 hypothetical protein YP_004387965.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004387966.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004387967.1 PFAM: Glutaminase; TIGRFAM: Glutaminase; HAMAP: Glutaminase; KEGG: atu:Atu1859 glutaminase YP_004387968.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: pol:Bpro_4523 peptidase M20D, amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004387969.1 PFAM: General substrate transporter; KEGG: rme:Rmet_5758 major facilitator protein family permease YP_004387970.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4525 LysR family transcriptional regulator YP_004387971.1 KEGG: sde:Sde_2785 hypothetical protein YP_004387972.1 manually curated; KEGG: afr:AFE_1417 acetyltransferase, GNAT family YP_004387973.1 PFAM: Protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein YP_004387974.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1692 major facilitator superfamily transporter YP_004387975.1 KEGG: dia:Dtpsy_2008 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004387976.1 KEGG: ajs:Ajs_1696 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004387977.1 PFAM: Alcohol dehydrogenase, C-terminal; KEGG: ajs:Ajs_1697 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase YP_004387978.1 KEGG: ajs:Ajs_1699 putative glutathione S-transferase-related protein YP_004387979.1 PFAM: Protein of unknown function DUF1566; KEGG: dia:Dtpsy_2002 protein of unknown function DUF1566 YP_004387980.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1703 major facilitator superfamily transporter YP_004387981.1 KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal YP_004387982.1 KEGG: ajs:Ajs_1629 hypothetical protein YP_004387983.1 PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; TIGRFAM: Cobalamin-independent methionine synthase; HAMAP: Cobalamin-independent methionine synthase; KEGG: ajs:Ajs_1630 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase YP_004387984.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_1631 LysR family transcriptional regulator YP_004387986.1 KEGG: dac:Daci_3076 hypothetical protein YP_004387987.1 PFAM: Protein of unknown function DUF3016; KEGG: dac:Daci_0667 hypothetical protein YP_004387988.1 KEGG: dac:Daci_3579 PEP phosphonomutase; PFAM: Isocitrate lyase/phosphorylmutase YP_004387989.1 KEGG: dac:Daci_3586 AcnD-accessory protein PrpF; TIGRFAM: PrpF, AcnD-accessory; PFAM: PrpF protein YP_004387990.1 TIGRFAM: 2-methylisocitrate dehydratase AcnD, Fe/S-dependent; KEGG: dia:Dtpsy_2080 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004387991.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; KEGG: ajs:Ajs_1635 methylcitrate synthase; PFAM: Citrate synthase-like YP_004387992.1 KEGG: dia:Dtpsy_2078 thioesterase superfamily protein; manually curated; PFAM: Thioesterase superfamily YP_004387993.1 KEGG: ajs:Ajs_1637 XRE family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Helix-turn-helix type 3; Protein of unknown function DUF955; SMART: Helix-turn-helix type 3 YP_004387994.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: cti:RALTA_B2225 putative transcription regulator, LysR family YP_004387995.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B2224 putative metallothiol transferase YP_004387996.1 KEGG: hse:Hsero_2301 hypothetical protein YP_004387997.1 KEGG: ajs:Ajs_1639 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004387998.1 KEGG: dia:Dtpsy_2074 histidine kinase; PFAM: Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004387999.1 KEGG: ajs:Ajs_1641 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004388000.1 KEGG: dia:Dtpsy_2072 hypothetical protein YP_004388001.1 KEGG: dia:Dtpsy_2071 hypothetical protein YP_004388002.1 PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_1644 hypothetical protein YP_004388003.1 KEGG: dia:Dtpsy_2060 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; PFAM: D-(-)-3-hydroxybutyrate oligomer hydrolase, putative YP_004388004.1 KEGG: ctt:CtCNB1_3704 putative lipoprotein YP_004388005.1 KEGG: dia:Dtpsy_2056 hypothetical protein YP_004388006.1 PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: ajs:Ajs_1649 protein of unknown function DUF395, YeeE/YedE YP_004388007.1 KEGG: dia:Dtpsy_2054 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004388008.1 TIGRFAM: Ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase; PFAM: Ferrochelatase YP_004388009.1 KEGG: dac:Daci_2563 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004388010.1 SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_2050 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004388011.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: ajs:Ajs_1655 alpha/beta hydrolase fold YP_004388012.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: ajs:Ajs_1656 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004388013.1 KEGG: dia:Dtpsy_2047 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004388014.1 TIGRFAM: Chorismate synthase; KEGG: dia:Dtpsy_2046 chorismate synthase; PFAM: Chorismate synthase YP_004388015.1 KEGG: dia:Dtpsy_2045 transcriptional regulator NrdR; TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone YP_004388016.1 KEGG: dia:Dtpsy_2044 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_004388017.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: dia:Dtpsy_2043 lytic transglycosylase catalytic YP_004388018.1 PFAM: Protein of unknown function DUF748; Outer membrane protein, OmpA/MotB, C-terminal; KEGG: ajs:Ajs_1662 hypothetical protein YP_004388019.1 PFAM: Protein of unknown function DUF349; KEGG: dia:Dtpsy_2041 hypothetical protein YP_004388020.1 SMART: Ribonuclease II/R; Cold shock protein; RNA-binding domain, S1; manually curated; KEGG: dia:Dtpsy_1240 ribonuclease R; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, N-terminal OB domain; Ribosomal protein S1, RNA-binding domain YP_004388021.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1241 short-chain dehydrogenase/reductase SDR YP_004388022.1 KEGG: aav:Aave_3388 cytochrome c553-like protein YP_004388023.1 KEGG: aav:Aave_3387 cytochrome c, class I; PFAM: Cytochrome c, class I YP_004388024.1 PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1244 hypothetical protein YP_004388025.1 KEGG: dia:Dtpsy_1245 hypothetical protein; HAMAP: Ribosome maturation factor RimP; PFAM: Ribosome maturation factor RimP YP_004388026.1 TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA-binding domain; KEGG: dia:Dtpsy_1246 NusA antitermination factor; SMART: RNA-binding domain, S1; K Homology YP_004388027.1 KEGG: dia:Dtpsy_1247 translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; Translation initiation factor IF- 2, domain 3 YP_004388028.1 KEGG: aav:Aave_3382 ribosome-binding factor A; TIGRFAM: Ribosome-binding factor A; PFAM: Ribosome-binding factor A YP_004388029.1 TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: ajs:Ajs_2559 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II YP_004388030.1 KEGG: ajs:Ajs_2558 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004388031.1 KEGG: vap:Vapar_3272 hypothetical protein YP_004388032.1 KEGG: ajs:Ajs_2556 3-hydroxyisobutyryl-CoA hydrolase; PFAM: Crotonase, core YP_004388033.1 KEGG: ajs:Ajs_2555 putative transmembrane anti-sigma factor YP_004388034.1 KEGG: dia:Dtpsy_1254 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004388035.1 KEGG: dia:Dtpsy_1255 secreted repeat of unknown function YP_004388036.1 KEGG: dia:Dtpsy_1256 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SsrA-binding protein YP_004388037.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: dia:Dtpsy_1257 cyclase/dehydrase YP_004388038.1 PFAM: Uncharacterised protein family UPF0125; KEGG: ajs:Ajs_2550 hypothetical protein YP_004388039.1 KEGG: ajs:Ajs_2549 hypothetical protein YP_004388040.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: dia:Dtpsy_1260 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core YP_004388041.1 TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; KEGG: dac:Daci_3013 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; NAD/GMP synthase YP_004388042.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10 YP_004388043.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004388044.1 PFAM: Integrase, catalytic core, phage; KEGG: bpt:Bpet1499 putative integrase/recombinase YP_004388045.1 PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: bpt:Bpet1498 putative integrase/recombinase YP_004388046.1 KEGG: bpt:Bpet2173 putative transposon YP_004388047.1 PFAM: Protein of unknown function DUF932; KEGG: sml:Smlt1327 hypothetical protein YP_004388048.1 KEGG: dia:Dtpsy_3534 ParB domain protein nuclease; PFAM: ParB-like nuclease; SMART: ParB-like nuclease YP_004388049.1 KEGG: dac:Daci_2732 hypothetical protein YP_004388050.1 KEGG: rfr:Rfer_0855 hypothetical protein YP_004388051.1 KEGG: psa:PST_3433 periplasmic transport protein; MerP; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein YP_004388052.1 PFAM: Mercuric transport protein MerT; KEGG: psa:PST_3432 mercuric transport protein YP_004388053.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: rme:Rmet_5990 mercury resistance regulatory protein MerR; SMART: HTH transcriptional regulator, MerR YP_004388054.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2217 protein of unknown function DUF6 transmembrane YP_004388055.1 KEGG: pau:PA14_31180 hypothetical protein YP_004388056.1 PFAM: Protein of unknown function DUF736; KEGG: dac:Daci_0462 hypothetical protein YP_004388057.1 KEGG: bpr:GBP346_A0950 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004388058.1 KEGG: rme:Rmet_1482 hypothetical protein YP_004388059.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004388060.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004388061.1 PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein YP_004388062.1 KEGG: ajs:Ajs_2652 hypothetical protein YP_004388063.1 PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein YP_004388064.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase YP_004388065.1 KEGG: bpt:Bpet2187 hypothetical protein YP_004388066.1 KEGG: rme:Rmet_1257 hypothetical protein YP_004388067.1 PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase YP_004388068.1 KEGG: pau:PA14_31070 hypothetical protein YP_004388069.1 KEGG: net:Neut_0014 twin-arginine translocation pathway signal; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2 YP_004388071.1 KEGG: ajs:Ajs_2700 hypothetical protein YP_004388072.1 TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_2202 heavy metal sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004388073.1 TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: ajs:Ajs_2725 two component heavy metal response transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004388074.1 KEGG: bmj:BMULJ_00903 copper resistance transmembrane protein; TIGRFAM: Copper-resistance protein CopA; Twin-arginine translocation pathway, signal sequence; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2 YP_004388075.1 KEGG: bmj:BMULJ_00902 copper resistance protein B; manually curated; PFAM: Copper resistance B precursor YP_004388076.1 PFAM: Blue (type 1) copper domain; KEGG: net:Neut_0023 blue (type1) copper domain-containing protein YP_004388077.1 KEGG: ajs:Ajs_2667 hypothetical protein YP_004388078.1 KEGG: dia:Dtpsy_2195 hypothetical protein YP_004388079.1 KEGG: dia:Dtpsy_2194 hypothetical protein YP_004388080.1 KEGG: dia:Dtpsy_2193 isoprenylcysteine carboxyl methyltransferase YP_004388082.1 PFAM: Heavy metal transport/detoxification protein; KEGG: ajs:Ajs_1492 heavy metal transport/detoxification protein YP_004388083.1 KEGG: rpf:Rpic12D_5298 hypothetical protein YP_004388084.1 PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2192 cytochrome c class I YP_004388085.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2710 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004388086.1 KEGG: maq:Maqu_0130 hypothetical protein YP_004388087.1 KEGG: axy:AXYL_01135 hypothetical protein YP_004388088.1 KEGG: axy:AXYL_01137 heavy metal RND efflux outer membrane protein, CzcC family YP_004388089.1 TIGRFAM: Secretion protein HlyD; KEGG: axy:AXYL_01138 RND family efflux transporter MFP subunit 3 YP_004388090.1 KEGG: axy:AXYL_01139 cation efflux system protein CusA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004388091.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004388092.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10 YP_004388093.1 PFAM: Integrase, catalytic core, phage; KEGG: bam:Bamb_2021 phage integrase family protein YP_004388094.1 KEGG: dia:Dtpsy_2288 type II citrate synthase; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like YP_004388095.1 PFAM: Protein of unknown function DUF339; KEGG: ajs:Ajs_2797 hypothetical protein YP_004388096.1 TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; KEGG: dac:Daci_2424 succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: Ferredoxin YP_004388097.1 TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: dia:Dtpsy_2285 succinate dehydrogenase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004388098.1 KEGG: aav:Aave_2203 succinate dehydrogenase subunit D; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit YP_004388099.1 KEGG: dia:Dtpsy_2283 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit YP_004388100.1 KEGG: dia:Dtpsy_2282 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004388101.1 KEGG: dia:Dtpsy_2281 malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD/NADP; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal YP_004388102.1 KEGG: dac:Daci_2430 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 11 YP_004388103.1 KEGG: dia:Dtpsy_2278 hypothetical protein YP_004388104.1 KEGG: ajs:Ajs_2787 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: Aconitase B, bacterial; PFAM: Aconitase B, N-terminal, bacterial; Aconitase B, HEAT-like, bacterial; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004388105.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_3364 transcriptional regulator, LysR family YP_004388106.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: ctt:CtCNB1_3363 acyl-CoA dehydrogenase-like protein YP_004388107.1 KEGG: ctt:CtCNB1_3361 AccB YP_004388108.1 KEGG: ctt:CtCNB1_3358 L-carnitine dehydratase/bile acid-inducible; PFAM: CoA-transferase family III YP_004388109.1 TIGRFAM: Glutathione reductase, eukaryote/bacterial; KEGG: dac:Daci_2356 glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004388110.1 KEGG: vei:Veis_4544 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin YP_004388111.1 KEGG: vap:Vapar_1594 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_004388112.1 KEGG: pol:Bpro_0576 molybdopterin dehydrogenase, FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal YP_004388113.1 KEGG: dac:Daci_2251 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core YP_004388114.1 KEGG: vei:Veis_4536 VWA containing CoxE family protein; PFAM: vWA containing CoxE-like; SMART: von Willebrand factor, type A YP_004388115.1 PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G YP_004388116.1 PFAM: XdhC- CoxI; KEGG: pol:Bpro_0572 hypothetical protein YP_004388117.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase YP_004388118.1 KEGG: dia:Dtpsy_2274 hypothetical protein YP_004388119.1 KEGG: gox:GOX2135 hypothetical protein YP_004388120.1 PFAM: Amine oxidase; KEGG: xal:XALc_2703 protoporphyrinogen oxidase protein YP_004388121.1 KEGG: reh:H16_A2892 hypothetical protein; manually curated; PFAM: Lysylphosphatidylglycerol synthetase/UPF0104 YP_004388122.1 KEGG: cph:Cpha266_0350 glycosyl transferase family protein; manually curated; PFAM: Glycosyl transferase, family 2 YP_004388123.1 PFAM: Peptidase U32; KEGG: dia:Dtpsy_2273 peptidase U32 YP_004388124.1 KEGG: dac:Daci_1894 hypothetical protein YP_004388125.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2444 LysR family transcriptional regulator YP_004388126.1 PFAM: Transposase, IS4-like; KEGG: pna:Pnap_4647 transposase, IS4 family protein YP_004388127.1 KEGG: dia:Dtpsy_2271 two component transcriptional regulator, fis family; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain YP_004388128.1 KEGG: ajs:Ajs_2780 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004388129.1 PFAM: Surfeit locus 1; KEGG: ajs:Ajs_2779 surfeit locus 1 family protein YP_004388130.1 KEGG: ajs:Ajs_2778 cytochrome c oxidase subunit IV; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic YP_004388131.1 KEGG: dia:Dtpsy_2267 cytochrome o ubiquinol oxidase, subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III YP_004388132.1 TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; KEGG: ajs:Ajs_2776 cytochrome-c oxidase; PFAM: Cytochrome c oxidase, subunit I YP_004388133.1 KEGG: ajs:Ajs_2775 ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal YP_004388134.1 PFAM: General substrate transporter; KEGG: ajs:Ajs_2774 general substrate transporter YP_004388135.1 KEGG: dia:Dtpsy_2263 protein TolA; TIGRFAM: Tol-Pal system, TolA; TonB, C-terminal; PFAM: Tol-Pal system, TolA YP_004388136.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2772 biopolymer transport protein ExbD/TolR YP_004388137.1 KEGG: dia:Dtpsy_2261 protein TolQ; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_004388138.1 KEGG: dia:Dtpsy_2260 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily YP_004388139.1 KEGG: dia:Dtpsy_2259 aminotransferase; PFAM: Aminotransferase, class I/classII YP_004388140.1 TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: dia:Dtpsy_2258 NusB antitermination factor; PFAM: NusB/RsmB/TIM44 YP_004388141.1 KEGG: ajs:Ajs_2767 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004388142.1 KEGG: dia:Dtpsy_2256 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA YP_004388143.1 PFAM: Ferredoxin; KEGG: dia:Dtpsy_2255 ferredoxin YP_004388144.1 PFAM: NUDIX hydrolase domain; KEGG: pna:Pnap_2699 NUDIX hydrolase YP_004388145.1 KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004388146.1 TIGRFAM: Glutamate--cysteine ligase, monofunctional; KEGG: dia:Dtpsy_1339 glutamate/cysteine ligase; PFAM: Glutamate--cysteine ligase YP_004388147.1 KEGG: vap:Vapar_3567 protein of unknown function DUF893 YccS/YhfK YP_004388148.1 KEGG: aav:Aave_2269 hypothetical protein YP_004388149.1 PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_4413 endoribonuclease L-PSP YP_004388150.1 PFAM: BFD-like [2Fe-2S]-binding domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_4414 BFD-like (2Fe-2S)-binding region YP_004388151.1 KEGG: pol:Bpro_4415 hypothetical protein YP_004388152.1 KEGG: pol:Bpro_4416 FAD dependent oxidoreductase; manually curated; PFAM: FAD dependent oxidoreductase YP_004388153.1 KEGG: dac:Daci_0779 hypothetical protein YP_004388154.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4347 LysR family transcriptional regulator YP_004388155.1 KEGG: ajs:Ajs_2510 GTP-binding protein, HSR1-related; TIGRFAM: GTP-binding protein, ribosome biogenesis, YlqF; PFAM: GTP-binding protein, HSR1-related YP_004388156.1 KEGG: dia:Dtpsy_1352 hypothetical protein YP_004388157.1 KEGG: dia:Dtpsy_1355 pseudouridine synthase; manually curated; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004388158.1 KEGG: dia:Dtpsy_1356 hypothetical protein YP_004388159.1 PFAM: Phosphoesterase, DHHA1; KEGG: ajs:Ajs_2502 phosphoesterase, DHHA1 YP_004388160.1 PFAM: Major facilitator superfamily MFS-1; KEGG: aav:Aave_2285 major facilitator superfamily transporter YP_004388161.1 KEGG: ajs:Ajs_2501 nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like) YP_004388162.1 TIGRFAM: RarD protein; KEGG: dia:Dtpsy_1360 RarD protein, DMT superfamily transporter YP_004388163.1 KEGG: dia:Dtpsy_1363 pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004388164.1 PFAM: Peptidase M23; KEGG: ajs:Ajs_2496 peptidase M23B YP_004388165.1 KEGG: dia:Dtpsy_1365 fumarate lyase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal YP_004388166.1 PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: dac:Daci_2483 hypothetical protein YP_004388167.1 PFAM: Protein of unknown function DUF924; KEGG: hel:HELO_3084 protein of unknown function DUF924 YP_004388168.1 TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; KEGG: ajs:Ajs_1608 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain YP_004388169.1 KEGG: dia:Dtpsy_2105 hypothetical protein YP_004388170.1 TIGRFAM: Dehydroquinase, class II; KEGG: ajs:Ajs_1610 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II YP_004388171.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_2103 alpha/beta hydrolase fold protein YP_004388172.1 PFAM: Peptide chain release factor class I/class II; KEGG: dia:Dtpsy_2102 class I peptide chain release factor YP_004388173.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B YP_004388174.1 PFAM: Phospholipase/carboxylesterase; KEGG: vei:Veis_2297 phospholipase/carboxylesterase YP_004388175.1 KEGG: ajs:Ajs_1615 hypothetical protein YP_004388176.1 KEGG: ajs:Ajs_1616 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type YP_004388177.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; Alpha-ketoglutarate dehydrogenase; KEGG: ajs:Ajs_1617 2-oxoacid dehydrogenase subunit E1; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain YP_004388178.1 PFAM: Amidase; KEGG: bpt:Bpet0082 putative amidase YP_004388179.1 KEGG: aav:Aave_3937 hypothetical protein YP_004388180.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hmg:100212933 similar to lysR transcriptional regulator YP_004388181.1 KEGG: vap:Vapar_5148 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004388182.1 PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_5147 major facilitator superfamily MFS_1 YP_004388183.1 KEGG: vap:Vapar_5146 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004388184.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_5145 NAD-dependent epimerase/dehydratase YP_004388185.1 PFAM: Protein of unknown function, DUF1537; KEGG: vap:Vapar_5144 type III effector Hrp-dependent outers YP_004388186.1 PFAM: Class II aldolase/adducin, N-terminal; KEGG: vap:Vapar_5143 putative aldolase YP_004388187.1 KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain YP_004388188.1 PFAM: Protein of unknown function DUF980; KEGG: ajs:Ajs_1618 hypothetical protein YP_004388189.1 PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_2095 UDP-2,3-diacylglucosamine hydrolase YP_004388190.1 KEGG: dia:Dtpsy_2094 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_004388191.1 KEGG: dia:Dtpsy_2093 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_004388192.1 PFAM: YkuD domain; KEGG: aav:Aave_2318 ErfK/YbiS/YcfS/YnhG YP_004388193.1 PFAM: Tetratricopeptide TPR-1; KEGG: aav:Aave_2319 TPR repeat-containing protein YP_004388194.1 SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: ajs:Ajs_1623 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR YP_004388195.1 SMART: HhH-GPD domain; manually curated; KEGG: dia:Dtpsy_2090 HhH-GPD family protein; PFAM: HhH-GPD domain YP_004388196.1 PFAM: Acetyl-CoA carboxylase, alpha subunit; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: ajs:Ajs_1625 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_004388197.1 KEGG: ajs:Ajs_1627 tRNA(Ile)-lysidine synthetase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; Lysidine-tRNA(Ile) synthetase, substrate-binding domain YP_004388198.1 KEGG: aav:Aave_2324 aspartate kinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT YP_004388199.1 PFAM: Chloride channel, voltage gated; KEGG: aav:Aave_4712 Cl-channel, voltage-gated family protein YP_004388200.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_1833 TetR family transcriptional regulator YP_004388201.1 KEGG: dia:Dtpsy_1685 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004388202.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_1686 protein of unknown function DUF214 YP_004388203.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_1836 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004388204.1 KEGG: ajs:Ajs_1837 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like YP_004388205.1 KEGG: ajs:Ajs_1838 exonuclease I; PFAM: Exonuclease C-terminal; Exonuclease, RNase T/DNA polymerase III YP_004388206.1 PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; KEGG: ajs:Ajs_1839 silent information regulator protein Sir2 YP_004388207.1 KEGG: dia:Dtpsy_1696 putative phytochrome sensor protein; PFAM: Uncharacterised protein family UPF0118; GAF; SMART: GAF YP_004388208.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aav:Aave_3219 GCN5-related N-acetyltransferase YP_004388209.1 KEGG: xtr:100496255 uracil phosphoribosyltransferase-like; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase YP_004388210.1 KEGG: dia:Dtpsy_1698 pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004388211.1 PFAM: Protein of unknown function DUF28; KEGG: dia:Dtpsy_1700 hypothetical protein YP_004388212.1 TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG YP_004388213.1 PFAM: Cytochrome d ubiquinol oxidase, subunit I; KEGG: ara:Arad_12230 cytochrome bd-type quinol oxidase subunit 1 YP_004388214.1 KEGG: msl:Msil_2643 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II YP_004388215.1 PFAM: Protein of unknown function DUF2474; KEGG: ara:Arad_12232 hypothetical protein YP_004388216.1 PFAM: LrgB-like protein; KEGG: dia:Dtpsy_2405 LrgB family protein YP_004388217.1 PFAM: Uncharacterised protein family LrgA/YohJ; KEGG: dac:Daci_2210 LrgA family protein YP_004388218.1 PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; KEGG: mpt:Mpe_A0752 GntR family transcriptional regulator; SMART: HTH transcriptional regulator, GntR YP_004388219.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: dia:Dtpsy_1701 glutathione S-transferase domain protein YP_004388220.1 KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase putative; PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, putative; SMART: ATPase, AAA+ type, core YP_004388221.1 TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: dia:Dtpsy_1703 hypothetical protein; PFAM: Protein of unknown function DUF28 YP_004388222.1 TIGRFAM: Phosphoribosylglycinamide synthetase; KEGG: ajs:Ajs_1899 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain YP_004388223.1 HAMAP: Coproporphyrinogen III oxidase; KEGG: dia:Dtpsy_1705 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase YP_004388224.1 KEGG: dia:Dtpsy_1706 iojap-like protein; TIGRFAM: Ribosome-associated, Iojap-like; PFAM: Ribosome-associated, Iojap-like YP_004388225.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase H; HAMAP: SPOUT methyltransferase, predicted; KEGG: aav:Aave_3199 rRNA large subunit methyltransferase; PFAM: SPOUT methyltransferase, predicted YP_004388226.1 KEGG: xtr:100495456 hypothetical protein LOC100495456; TIGRFAM: Maf-like protein; PFAM: Maf-like protein YP_004388227.1 KEGG: dia:Dtpsy_1709 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004388228.1 KEGG: dia:Dtpsy_1710 cytochrome d1 heme region; PFAM: Cytochrome c, class I YP_004388229.1 KEGG: dia:Dtpsy_1711 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004388230.1 KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator YP_004388231.1 KEGG: dia:Dtpsy_1714 putative transcriptional regulator, AsnC family YP_004388232.1 KEGG: ajs:Ajs_1910 cytochrome d1, heme region YP_004388233.1 KEGG: dia:Dtpsy_1716 hypothetical protein YP_004388234.1 KEGG: dia:Dtpsy_1717 hydroxylamine reductase; PFAM: Cytochrome c, class I YP_004388235.1 TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: dia:Dtpsy_1718 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase YP_004388236.1 TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: ajs:Ajs_1914 ribonuclease G; SMART: RNA-binding domain, S1 YP_004388237.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pca:Pcar_0095 putative sensory transduction system, regulatory protein; SMART: Diguanylate cyclase, predicted YP_004388238.1 PFAM: LysR, substrate-binding; KEGG: hmg:100212933 similar to lysR transcriptional regulator YP_004388239.1 KEGG: dia:Dtpsy_1720 putative aminotransferase; PFAM: Aminotransferase, class I/classII YP_004388240.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1721 transcriptional regulator CysB-like protein YP_004388241.1 PFAM: Cobalamin (vitamin B12) biosynthesis CbiX; KEGG: dia:Dtpsy_1722 cobalamin (vitamin B12) biosynthesis CbiX protein YP_004388242.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: dia:Dtpsy_1723 permease YjgP/YjgQ family protein YP_004388243.1 KEGG: dia:Dtpsy_1724 permease YjgP/YjgQ family protein; manually curated; PFAM: Permease YjgP/YjgQ, predicted YP_004388244.1 PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal; KEGG: ajs:Ajs_1921 PepA aminopeptidase YP_004388245.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: ajs:Ajs_1922 DNA polymerase III chi subunit, HolC YP_004388246.1 KEGG: dia:Dtpsy_1727 hypothetical protein YP_004388247.1 PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1925 extracellular ligand-binding receptor YP_004388248.1 KEGG: ajs:Ajs_1926 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004388249.1 manually curated; KEGG: ajs:Ajs_1927 hypothetical protein YP_004388250.1 KEGG: dia:Dtpsy_1731 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2257 YP_004388251.1 PFAM: UspA; KEGG: dia:Dtpsy_1732 UspA domain protein YP_004388252.1 KEGG: dac:Daci_4355 hypothetical protein; TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Haemerythrin/HHE cation-binding motif YP_004388253.1 KEGG: ajs:Ajs_1930 hypothetical protein YP_004388254.1 TIGRFAM: Thiolase; KEGG: xtr:100490341 acetyl-CoA acetyltransferase-like; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004388255.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1735 short-chain dehydrogenase/reductase SDR YP_004388256.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: ajs:Ajs_1933 ribosomal large subunit pseudouridine synthase A YP_004388257.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; Signal transduction response regulator, receiver domain; KEGG: dia:Dtpsy_1737 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; Signal transduction response regulator, receiver domain YP_004388258.1 KEGG: dia:Dtpsy_1738 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004388259.1 KEGG: dia:Dtpsy_1772 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain YP_004388260.1 KEGG: dia:Dtpsy_1773 putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain YP_004388261.1 KEGG: dia:Dtpsy_1406 hypothetical protein YP_004388262.1 PFAM: Redoxin; KEGG: ajs:Ajs_2433 redoxin domain-containing protein YP_004388263.1 KEGG: dia:Dtpsy_1426 2',5' RNA ligase YP_004388264.1 KEGG: ajs:Ajs_2417 hypothetical protein YP_004388265.1 KEGG: dia:Dtpsy_1431 hypothetical protein YP_004388266.1 KEGG: dia:Dtpsy_1432 putative transmembrane anti-sigma factor YP_004388267.1 KEGG: dia:Dtpsy_1433 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004388268.1 KEGG: dia:Dtpsy_1434 hypothetical protein YP_004388269.1 PFAM: (Uracil-5)-methyltransferase; manually curated; TIGRFAM: 23S rRNA methyltransferase/RumA; KEGG: dia:Dtpsy_1435 23S rRNA 5-methyluridine methyltransferase; HAMAP: 23S rRNA methyltransferase/RumA YP_004388270.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: D-serine ammonia-lyase; HAMAP: D-serine dehydratase; KEGG: ajs:Ajs_2250 D-serine dehydratase YP_004388271.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: ajs:Ajs_2244 hypothetical protein YP_004388272.1 KEGG: har:HEAR1365 azurin precursor; TIGRFAM: Azurin, proteobacteria; PFAM: Blue (type 1) copper domain YP_004388273.1 HAMAP: Uncharacterised protein family UPF0313; PFAM: Radical SAM N-terminal; Radical SAM; KEGG: dia:Dtpsy_1631 radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_004388274.1 KEGG: ajs:Ajs_2151 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/classII YP_004388275.1 TIGRFAM: Excinuclease ABC, B subunit; PFAM: Helicase, C-terminal; UvrB/UvrC protein; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: dia:Dtpsy_1636 excinuclease ABC subunit B; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004388276.1 KEGG: dia:Dtpsy_1637 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: ISC system FeS cluster assembly, IscR transcription factor; Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2 YP_004388277.1 TIGRFAM: Cysteine desulfurase; KEGG: dia:Dtpsy_1638 cysteine desulfurase IscS; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004388278.1 KEGG: dia:Dtpsy_1639 FeS cluster assembly scaffold IscU; TIGRFAM: ISC system FeS cluster assembly, IscU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal YP_004388279.1 KEGG: dia:Dtpsy_1640 iron-sulfur cluster assembly protein IscA; TIGRFAM: ISC system FeS cluster assembly, IscA scaffold; FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004388280.1 TIGRFAM: Co-chaperone Hsc20; PFAM: Heat shock cognate protein B, C-terminal oligomerisation; Heat shock protein DnaJ, N-terminal; KEGG: dia:Dtpsy_1641 co-chaperone Hsc20; SMART: Heat shock protein DnaJ, N-terminal YP_004388281.1 KEGG: dia:Dtpsy_1642 chaperone protein HscA; TIGRFAM: ISC system FeS cluster assembly, HscA chaperone; PFAM: Heat shock protein 70 YP_004388282.1 KEGG: dia:Dtpsy_1643 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: Ferredoxin, 2Fe-2S type; PFAM: Ferredoxin YP_004388283.1 SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: ajs:Ajs_2138 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III YP_004388284.1 PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2136 FAD dependent oxidoreductase YP_004388285.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB YP_004388286.1 KEGG: dia:Dtpsy_1648 hypothetical protein YP_004388287.1 KEGG: ajs:Ajs_2133 hypothetical protein YP_004388288.1 TIGRFAM: Dihydroorotate dehydrogenase, class 2; KEGG: ajs:Ajs_2132 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2 YP_004388289.1 TIGRFAM: Ribose 5-phosphate isomerase, type A; KEGG: ajs:Ajs_2131 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase, type A YP_004388290.1 PFAM: Glutaredoxin; KEGG: dia:Dtpsy_1652 glutaredoxin YP_004388291.1 KEGG: ajs:Ajs_2129 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F YP_004388292.1 KEGG: dac:Daci_3983 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004388293.1 KEGG: ctt:CtCNB1_2245 two component transcriptional regulator, LuxR; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal YP_004388294.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_1656 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004388295.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; KEGG: dia:Dtpsy_1657 pyruvate dehydrogenase subunit E1; PFAM: Transketolase, N-terminal YP_004388296.1 TIGRFAM: Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex; KEGG: dia:Dtpsy_1658 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004388297.1 KEGG: dia:Dtpsy_1659 dihydrolipoamide dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Biotin/lipoyl attachment; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004388300.1 KEGG: aav:Aave_2466 hypothetical protein YP_004388301.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: pna:Pnap_3558 filamentation induced by cAMP protein Fic YP_004388302.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1341 transcriptional regulator, LysR family YP_004388303.1 KEGG: ajs:Ajs_1877 transposase Tn3 YP_004388304.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_004388305.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66 YP_004388306.1 PFAM: Transposase IS3/IS911family; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911 YP_004388307.1 KEGG: reu:Reut_B3949 hypothetical protein YP_004388308.1 PFAM: S-adenosylmethionine-dependent methyltransferase; KEGG: dia:Dtpsy_1661 hypothetical protein YP_004388309.1 KEGG: ajs:Ajs_2093 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004388310.1 KEGG: ade:Adeh_1681 PE-PGRS family protein YP_004388311.1 PFAM: Protein of unknown function DUF55; KEGG: aav:Aave_2834 hypothetical protein YP_004388312.1 PFAM: Transglycosylase-associated protein; KEGG: aav:Aave_2831 transglycosylase-associated protein YP_004388313.1 KEGG: ajs:Ajs_2091 NLP/P60 protein; manually curated; PFAM: NLP/P60 YP_004388314.1 PFAM: Amino acid permease domain; KEGG: dac:Daci_3739 D-alanine/D-serine/glycine permease YP_004388315.1 KEGG: dia:Dtpsy_1665 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004388316.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; CHASE; PAS fold; KEGG: dia:Dtpsy_1667 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif YP_004388317.1 PFAM: Uncharacterised protein family UPF0060; KEGG: ajs:Ajs_2087 hypothetical protein YP_004388318.1 KEGG: nar:Saro_2119 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004388319.1 TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC; KEGG: dia:Dtpsy_1669 chromosome segregation protein SMC; SMART: SMCs flexible hinge YP_004388320.1 SMART: ZipA, C-terminal FtsZ-binding domain; KEGG: dia:Dtpsy_1670 ZipA FtsZ-binding region YP_004388321.1 SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: ajs:Ajs_2083 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase, adenylation; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; NAD-dependent DNA ligase, OB-fold YP_004388322.1 PFAM: Patatin/Phospholipase A2-related; KEGG: ajs:Ajs_2082 patatin YP_004388323.1 KEGG: ajs:Ajs_2081 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004388324.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1675 major facilitator superfamily MFS_1 YP_004388325.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_1676 NUDIX hydrolase YP_004388326.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: dia:Dtpsy_1677 fumarylacetoacetate (FAA) hydrolase YP_004388327.1 TIGRFAM: Maleylacetoacetate isomerase; KEGG: dia:Dtpsy_1678 maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal YP_004388328.1 KEGG: dia:Dtpsy_1679 protein of unknown function DUF152; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase YP_004388329.1 KEGG: dia:Dtpsy_1680 hypothetical protein YP_004388330.1 KEGG: dia:Dtpsy_1681 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1 YP_004388331.1 TIGRFAM: Thiolase; KEGG: ajs:Ajs_2073 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004388332.1 TIGRFAM: Acetoacetyl-CoA reductase; KEGG: ajs:Ajs_2072 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004388333.1 KEGG: ajs:Ajs_2071 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004388334.1 KEGG: dac:Daci_3609 hypothetical protein YP_004388335.1 KEGG: dac:Daci_3610 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004388336.1 KEGG: dac:Daci_3611 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase YP_004388337.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: dac:Daci_3612 LysR family transcriptional regulator YP_004388338.1 TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; KEGG: ajs:Ajs_2070 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; PFAM: Methyltransferase small YP_004388339.1 KEGG: ajs:Ajs_2069 succinyl-diaminopimelate desuccinylase; TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004388340.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: dia:Dtpsy_1891 twitching motility protein; SMART: ATPase, AAA+ type, core YP_004388341.1 KEGG: dia:Dtpsy_1890 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_004388342.1 TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; KEGG: dia:Dtpsy_1889 succinyldiaminopimelate transaminase; PFAM: Aminotransferase, class I/classII YP_004388343.1 KEGG: dia:Dtpsy_1887 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: Electron transport complex, RnfB; PFAM: Putative Fe-S cluster; 4Fe-4S binding domain YP_004388344.1 KEGG: ajs:Ajs_2063 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: Polyhydroxyalkanoate depolymerase; PFAM: PHB de-polymerase, C-terminal YP_004388345.1 KEGG: dia:Dtpsy_1885 RelA/SpoT domain protein; PFAM: RelA/SpoT; SMART: RelA/SpoT YP_004388346.1 KEGG: dia:Dtpsy_1883 tRNA-dihydrouridine synthase A; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, YjbN; PFAM: tRNA-dihydrouridine synthase YP_004388347.1 PFAM: MaoC-like dehydratase; KEGG: pde:Pden_4680 dehydratase YP_004388348.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pde:Pden_4681 TetR family transcriptional regulator YP_004388349.1 PFAM: Saccharopine dehydrogenase / Homospermidine synthase; KEGG: dia:Dtpsy_1846 saccharopine dehydrogenase YP_004388350.1 KEGG: dia:Dtpsy_1847 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004388351.1 KEGG: dia:Dtpsy_1848 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004388352.1 KEGG: axy:AXYL_01256 3-hydroxy-3-methylglutaryl-CoA lyase 1; PFAM: Pyruvate carboxyltransferase YP_004388353.1 KEGG: axy:AXYL_01255 extra-cytoplasmic solute receptor family protein 24 YP_004388354.1 KEGG: axy:AXYL_01254 CoA-transferase family III family protein 9; PFAM: CoA-transferase family III YP_004388355.1 KEGG: rpt:Rpal_2644 transcriptional regulator, XRE family; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Helix-turn-helix type 3; Protein of unknown function DUF955; SMART: Helix-turn-helix type 3 YP_004388356.1 TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: dia:Dtpsy_1849 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding YP_004388357.1 KEGG: xtr:100495832 uncharacterized protein CC_2483-like; TIGRFAM: ArgK protein; PFAM: ArgK protein YP_004388358.1 KEGG: ajs:Ajs_2042 carboxyl transferase; PFAM: Carboxyl transferase YP_004388359.1 SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: dia:Dtpsy_1853 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment YP_004388360.1 KEGG: dia:Dtpsy_1854 lactoylglutathione lyase YP_004388361.1 KEGG: ajs:Ajs_2045 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; TIGRFAM: Biotin synthase; HAMAP: Biotin synthase; SMART: Biotin/thiamin synthesis-associated protein; Elongator protein 3/MiaB/NifB YP_004388362.1 KEGG: pol:Bpro_1449 twin-arginine translocation pathway signal YP_004388363.1 KEGG: pol:Bpro_1450 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004388364.1 KEGG: pol:Bpro_1451 histidine kinase; PFAM: Two-component sensor kinase N-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004388365.1 KEGG: pol:Bpro_1452 hypothetical protein YP_004388366.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: pna:Pnap_2833 OsmC family protein YP_004388367.1 KEGG: pna:Pnap_2832 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004388368.1 KEGG: pna:Pnap_2829 hypothetical protein YP_004388369.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: alv:Alvin_1195 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004388370.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pna:Pnap_2831 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004388371.1 PFAM: Outer membrane efflux protein; KEGG: pna:Pnap_2830 TolC family type I secretion outer membrane protein YP_004388372.1 PFAM: Acriflavin resistance protein; KEGG: pna:Pnap_2828 acriflavin resistance protein YP_004388373.1 KEGG: pna:Pnap_2827 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004388374.1 KEGG: pna:Pnap_2826 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004388375.1 KEGG: tjr:TherJR_2256 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain YP_004388376.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: rpa:RPA2008 hypothetical protein YP_004388377.1 KEGG: axy:AXYL_04163 extra-cytoplasmic solute receptor family protein 99 YP_004388378.1 KEGG: bpt:Bpet3225 putative secreted protein YP_004388379.1 KEGG: bxe:Bxe_C0307 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004388380.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0308 putative short-chain dehydrogenase/reductase; SMART: Polyketide synthase/Fatty acid synthase, KR YP_004388381.1 PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: xtr:100486926 histidinol dehydrogenase 2-like YP_004388382.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2324 methyltransferase type 11 YP_004388383.1 PFAM: DTW; KEGG: dia:Dtpsy_1758 DTW domain containing protein YP_004388384.1 KEGG: dia:Dtpsy_1757 uncharacterized peroxidase-related enzyme; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004388385.1 PFAM: Sulfatase; Domain of unknown function DUF1705; KEGG: ajs:Ajs_1955 sulfatase YP_004388386.1 KEGG: dia:Dtpsy_1755 PAP2 (acid phosphatase) superfamily protein-like protein YP_004388387.1 KEGG: dia:Dtpsy_1754 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004388388.1 KEGG: dia:Dtpsy_1753 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004388389.1 PFAM: Crotonase, core; KEGG: bbr:BB4306 putative enoyl-CoA hydratase/isomerase family protein YP_004388390.1 KEGG: xtr:100486988 UPF0065 protein in tcbD-tcbE intergenic region-like YP_004388391.1 KEGG: bbr:BB4304 putative zinc-binding dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like YP_004388392.1 KEGG: bbr:BB4303 putative racemase; PFAM: CoA-transferase family III YP_004388393.1 KEGG: xtr:100487140 short-chain specific acyl-CoA dehydrogenase, mitochondrial-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004388394.1 KEGG: bbr:BB1197 hypothetical protein YP_004388395.1 KEGG: cti:RALTA_B0352 putative acyl-CoA transferases/carnitine dehydratase; PFAM: CoA-transferase family III YP_004388396.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bbr:BB4302 TetR family transcriptional regulator YP_004388397.1 KEGG: xtr:100487291 electron transfer flavoprotein-ubiquinone oxidoreductase-like; PFAM: Electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase YP_004388398.1 PFAM: ABC transporter substrate binding protein; KEGG: ajs:Ajs_1949 hypothetical protein YP_004388399.1 PFAM: ABC transporter permease; KEGG: dac:Daci_4312 inner-membrane translocator YP_004388400.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1748 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004388401.1 KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS YP_004388402.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: vap:Vapar_5337 alpha/beta hydrolase fold protein YP_004388403.1 KEGG: azo:azo3873 putative glucase dehydrogenase subunit alpha; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004388404.1 KEGG: azo:azo3872 hypothetical protein YP_004388405.1 PFAM: Biotin/lipoate A/B protein ligase; KEGG: azo:azo3871 putative lipoate protein ligase YP_004388406.1 KEGG: azo:azo3870 hypothetical protein; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain YP_004388407.1 PFAM: Biotin/lipoyl attachment; KEGG: rfr:Rfer_3967 biotin/lipoyl attachment YP_004388408.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: rfr:Rfer_3966 transketolase; SMART: Transketolase-like, pyrimidine-binding domain YP_004388409.1 KEGG: azo:azo3867 acetoin dehydrogenase subunit alpha; PFAM: Dehydrogenase, E1 component YP_004388410.1 KEGG: dia:Dtpsy_1745 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type YP_004388411.1 KEGG: ajs:Ajs_1941 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004388412.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dia:Dtpsy_1743 tripartite ATP-independent periplasmic transporter DctQ component YP_004388413.1 KEGG: dia:Dtpsy_1742 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004388414.1 KEGG: bpt:Bpet1117 metallo-beta-lactamase family protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like YP_004388415.1 TIGRFAM: Glycine cleavage system T protein; KEGG: xtr:100488488 hypothetical protein LOC100488488; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel YP_004388416.1 KEGG: xtr:100488332 glycine cleavage system H protein-like; TIGRFAM: Glycine cleavage H-protein, subgroup; PFAM: Glycine cleavage H-protein YP_004388417.1 TIGRFAM: Glycine cleavage system P protein, homodimeric; HAMAP: Glycine cleavage system P protein, homodimeric; KEGG: dia:Dtpsy_1739 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal YP_004388418.1 PFAM: Protein of unknown function DUF156; KEGG: ajs:Ajs_2799 hypothetical protein YP_004388419.1 KEGG: dia:Dtpsy_2290 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal YP_004388420.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: ajs:Ajs_2801 carboxylesterase; PFAM: Putative esterase YP_004388422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_2228 transcriptional regulator, LysR family YP_004388423.1 KEGG: ajs:Ajs_2803 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004388424.1 PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: ajs:Ajs_2805 GreA/GreB family elongation factor YP_004388425.1 PFAM: Acyltransferase 3; KEGG: dia:Dtpsy_2295 acyltransferase 3 YP_004388426.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase, NPD YP_004388427.1 KEGG: dia:Dtpsy_2297 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA dehydrogenase, N-terminal, bacteria YP_004388428.1 KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004388429.1 KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004388430.1 PFAM: Crotonase, core; KEGG: ajs:Ajs_2812 enoyl-CoA hydratase YP_004388431.1 PFAM: Histone deacetylase superfamily; KEGG: ajs:Ajs_2813 histone deacetylase superfamily protein YP_004388432.1 KEGG: dia:Dtpsy_2303 ATPase associated with various cellular activities AAA_3; PFAM: ATPase, AAA-3; SMART: ATPase, AAA+ type, core YP_004388433.1 KEGG: ajs:Ajs_2816 transglutaminase domain-containing protein; PFAM: Protein of unknown function DUF3488; Transglutaminase-like; SMART: Transglutaminase-like YP_004388434.1 TIGRFAM: Lytic transglycosylase MltB; KEGG: dia:Dtpsy_2306 lytic murein transglycosylase B YP_004388435.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: lch:Lcho_4275 transketolase central region; SMART: Transketolase-like, pyrimidine-binding domain YP_004388436.1 KEGG: dac:Daci_0728 transketolase domain-containing protein; PFAM: Transketolase, N-terminal YP_004388437.1 KEGG: pol:Bpro_1457 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004388438.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: lch:Lcho_0406 tripartite ATP-independent periplasmic transporter DctQ YP_004388439.1 KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004388440.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: lch:Lcho_0404 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR YP_004388441.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_1453 LysR family transcriptional regulator YP_004388442.1 SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: hse:Hsero_0506 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004388443.1 KEGG: bxe:Bxe_B0983 putative 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004388444.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_2307 transcriptional regulator, LysR family YP_004388445.1 KEGG: dia:Dtpsy_2308 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0324, bacteria; PFAM: Uncharacterised protein family UPF0324, prokaryote YP_004388446.1 KEGG: dia:Dtpsy_2309 putative transporter signal peptide protein YP_004388447.1 PFAM: Protein of unknown function DUF2242; KEGG: dia:Dtpsy_2310 putative lipoprotein YP_004388448.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2312 protein of unknown function DUF214 YP_004388449.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2313 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004388450.1 KEGG: dia:Dtpsy_2314 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004388451.1 KEGG: dia:Dtpsy_2315 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004388452.1 TIGRFAM: Peptidase M22, glycoprotease, subgroup; Peptidase M22, O-sialoglycoprotein peptidase; KEGG: dia:Dtpsy_2317 putative DNA-binding/iron metalloprotein/AP endonuclease; PFAM: Peptidase M22, glycoprotease YP_004388453.1 KEGG: dia:Dtpsy_2323 putative signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004388454.1 KEGG: dia:Dtpsy_2324 calcium-binding EF-hand-containing protein YP_004388455.1 KEGG: aav:Aave_2112 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004388456.1 KEGG: dia:Dtpsy_2326 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004388457.1 KEGG: dia:Dtpsy_2327 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004388458.1 TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: ajs:Ajs_2839 assimilatory nitrite reductase (NAD(P)H) large subunit precursor; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like YP_004388459.1 KEGG: ajs:Ajs_2840 assimilatory nitrite reductase (NAD(P)H) small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain YP_004388460.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; BFD-like [2Fe-2S]-binding domain; KEGG: ajs:Ajs_2841 assimilatory nitrate reductase (NADH) alpha subunit apoprotein; SMART: Molybdopterin oxidoreductase, Fe4S4 domain YP_004388461.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pol:Bpro_3273 major facilitator transporter YP_004388462.1 PFAM: SNARE associated Golgi protein; KEGG: net:Neut_2429 hypothetical protein YP_004388463.1 PFAM: Glycosyl transferase, family 3, N-terminal; KEGG: ajs:Ajs_2842 glycosyl transferase family protein YP_004388464.1 TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: ajs:Ajs_2843 uroporphyrinogen-III C-methyltransferase; PFAM: Tetrapyrrole methylase YP_004388465.1 PFAM: Thioesterase superfamily; KEGG: dia:Dtpsy_2333 thioesterase superfamily protein YP_004388466.1 KEGG: dia:Dtpsy_2335 HI0933 family protein; TIGRFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like YP_004388467.1 PFAM: NnrS; KEGG: ajs:Ajs_2847 NnrS family protein YP_004388468.1 PFAM: Protein of unknown function DUF2249; KEGG: dia:Dtpsy_2337 hypothetical protein YP_004388469.1 KEGG: dia:Dtpsy_2338 FeS assembly SUF system protein SufT; TIGRFAM: FeS assembly SUF system protein SufT, putative; PFAM: Domain of unknown function DUF59 YP_004388470.1 KEGG: dia:Dtpsy_2339 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS cluster assembly, SufU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal YP_004388471.1 TIGRFAM: Cysteine desulfurase, SufS; KEGG: ajs:Ajs_2851 aminotransferase, class V; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004388472.1 PFAM: SUF system FeS cluster assembly, SufBD; KEGG: ajs:Ajs_2852 SufBD protein YP_004388473.1 TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2342 FeS assembly ATPase SufC; SMART: ATPase, AAA+ type, core YP_004388474.1 KEGG: dia:Dtpsy_2343 cysteine desulfurase activator complex subunit SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD YP_004388475.1 TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: vap:Vapar_3540 30S ribosomal protein S21; PFAM: Ribosomal protein S21 YP_004388476.1 KEGG: aav:Aave_2091 GatB/YqeY domain-containing protein YP_004388477.1 PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: ajs:Ajs_1963 metal dependent phosphohydrolase YP_004388478.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: dia:Dtpsy_1763 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase YP_004388479.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: pna:Pnap_2658 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase YP_004388480.1 TIGRFAM: PAS; PFAM: Transcription regulator LuxR, C-terminal; PAS fold; KEGG: dia:Dtpsy_1761 transcriptional regulator, LuxR family; SMART: Transcription regulator LuxR, C-terminal; PAS YP_004388481.1 PFAM: Acyltransferase 3; KEGG: ajs:Ajs_2326 acyltransferase 3 YP_004388482.1 KEGG: ajs:Ajs_2327 N-acetylglutamate synthase; TIGRFAM: Amino-acid N-acetyltransferase (ArgA); PFAM: Aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase (GNAT) domain YP_004388483.1 PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_3393 endoribonuclease L-PSP YP_004388484.1 KEGG: bam:Bamb_3394 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004388485.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: vei:Veis_4472 Asp/Glu racemase YP_004388486.1 PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_4471 extracellular ligand-binding receptor YP_004388487.1 PFAM: ABC transporter permease; KEGG: vei:Veis_4470 inner-membrane translocator YP_004388488.1 PFAM: ABC transporter permease; KEGG: vei:Veis_4469 inner-membrane translocator YP_004388489.1 PFAM: ABC transporter-like; KEGG: vei:Veis_4468 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004388490.1 PFAM: ABC transporter-like; KEGG: vei:Veis_4467 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004388491.1 PFAM: Extracellular ligand-binding receptor; KEGG: bcm:Bcenmc03_6241 extracellular ligand-binding receptor YP_004388492.1 KEGG: tbd:Tbd_1098 dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; PFAM: Dihydrodipicolinate synthetase YP_004388493.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: xau:Xaut_0390 indolepyruvate ferredoxin oxidoreductase YP_004388494.1 KEGG: vei:Veis_4063 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004388495.1 KEGG: dar:Daro_3357 hypothetical protein; PFAM: GAF; Metal-dependent phosphohydrolase, HD subdomain; SMART: GAF; Metal-dependent phosphohydrolase, HD domain YP_004388496.1 KEGG: dia:Dtpsy_1523 disulphide bond formation protein DsbB; HAMAP: Disulphide bond formation protein DsbB; PFAM: Disulphide bond formation protein DsbB/BdbC YP_004388497.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Sulphate transport system permease protein 1; KEGG: dia:Dtpsy_1522 sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter-like YP_004388498.1 KEGG: xtr:100493368 sulfate transport system permease protein cysW-like; TIGRFAM: Sulphate ABC transporter, permease protein CysW; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004388499.1 KEGG: xtr:100493198 probable sulfate transport system permease protein cysT-like; TIGRFAM: Sulphate ABC transporter, permease protein CysT; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004388500.1 KEGG: dia:Dtpsy_1519 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004388501.1 PFAM: Protein of unknown function DUF1234; KEGG: aav:Aave_2544 hypothetical protein YP_004388502.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1518 transcriptional regulator, LysR family YP_004388503.1 PFAM: Flavodoxin-like fold; KEGG: dia:Dtpsy_1517 NAD(P)H dehydrogenase (quinone) YP_004388504.1 PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_1516 NADPH-dependent FMN reductase YP_004388505.1 KEGG: dia:Dtpsy_1515 lipoprotein, YaeC family; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein YP_004388506.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_1513 binding-protein-dependent transport systems inner membrane component YP_004388507.1 PFAM: ABC transporter-like; NIL domain; KEGG: dia:Dtpsy_1512 DL-methionine transporter ATP-binding subunit; SMART: NIL domain; ATPase, AAA+ type, core YP_004388508.1 PFAM: Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein; KEGG: ajs:Ajs_2347 membrane protein-like protein YP_004388509.1 KEGG: dia:Dtpsy_1509 recombination protein RecR; TIGRFAM: RecR protein; SMART: Toprim domain; Helix-hairpin-helix DNA-binding motif, class 1 YP_004388510.1 KEGG: ctt:CtCNB1_1631 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0133; PFAM: Uncharacterised protein family UPF0133 YP_004388511.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA polymerase III, subunit gamma/ tau; KEGG: dia:Dtpsy_1507 DNA polymerase III, subunits gamma and tau; PFAM: DNA polymerase III, gamma subunit, domain III; ATPase, AAA-type, core YP_004388512.1 KEGG: gpb:HDN1F_09840 molybdopterin-binding protein; TIGRFAM: Molybdenum-binding protein, N-terminal; Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, LysR YP_004388513.1 TIGRFAM: Putative molybdenum utilization protein ModD; KEGG: cli:Clim_0375 ModD protein; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal YP_004388514.1 KEGG: dac:Daci_3882 binding-protein-dependent transport systems inner membrane component; TIGRFAM: Molybdate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004388515.1 TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; KEGG: dac:Daci_3883 molybdenum ABC transporter periplasmic molybdate-binding protein YP_004388516.1 PFAM: Protein of unknown function DUF364; KEGG: mta:Moth_1420 hypothetical protein YP_004388517.1 PFAM: Methyltransferase type 11; KEGG: bpt:Bpet1277 hypothetical protein YP_004388518.1 PFAM: ABC transporter-like; KEGG: dac:Daci_4650 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004388519.1 PFAM: ABC transporter permease protein; KEGG: dac:Daci_4649 transport system permease YP_004388520.1 PFAM: Periplasmic binding protein; KEGG: ctt:CtCNB1_0597 periplasmic binding protein YP_004388521.1 PFAM: Protein of unknown function DUF2478; KEGG: bpt:Bpet1276 hypothetical protein YP_004388522.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: ctt:CtCNB1_0594 TonB-dependent receptor YP_004388523.1 KEGG: dia:Dtpsy_1506 hypothetical protein YP_004388524.1 KEGG: dia:Dtpsy_1505 HI0933 family protein; TIGRFAM: Conserved hyptotheical protein CHP03862, flavoprotein, PP4765; Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like YP_004388525.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: bpe:BP2937 hypothetical protein YP_004388526.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: pag:PLES_41041 putative pirin protein YP_004388527.1 PFAM: DNA helicase, UvrD/REP type; KEGG: dia:Dtpsy_1503 UvrD/REP helicase YP_004388528.1 KEGG: ajs:Ajs_2356 exonuclease-like protein YP_004388529.1 KEGG: vap:Vapar_2323 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004388530.1 TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, N-terminal; Rho termination factor, RNA-binding; KEGG: ajs:Ajs_2358 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core; Rho termination factor, N-terminal YP_004388531.1 KEGG: dia:Dtpsy_1495 ribosomal protein L31; TIGRFAM: Ribosomal protein L31; PFAM: Ribosomal protein L31 YP_004388532.1 KEGG: ajs:Ajs_2364 putative inner membrane transmembrane protein YP_004388533.1 KEGG: ajs:Ajs_2365 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004388534.1 TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_1492 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS YP_004388535.1 TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver domain; KEGG: ajs:Ajs_2367 two component transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004388536.1 KEGG: ajs:Ajs_2368 phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU YP_004388537.1 SMART: ATPase, AAA+ type, core; K Homology; TIGRFAM: Phosphate transport system permease protein 1; KEGG: aav:Aave_2629 phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter-like YP_004388538.1 KEGG: ajs:Ajs_2370 phosphate transporter permease subunit PtsA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004388539.1 KEGG: dia:Dtpsy_1487 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004388540.1 KEGG: dia:Dtpsy_1486 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004388541.1 KEGG: dia:Dtpsy_1483 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase YP_004388542.1 KEGG: ajs:Ajs_2377 phosphohistidine phosphatase, SixA; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004388543.1 PFAM: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; HAMAP: Polyphosphate kinase; KEGG: dia:Dtpsy_1480 polyphosphate kinase YP_004388544.1 KEGG: dia:Dtpsy_1479 ornithine-acyl(acyl carrier protein) N-acyltransferase YP_004388545.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: ajs:Ajs_2380 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif YP_004388546.1 TIGRFAM: Phosphoglucosamine mutase; KEGG: dia:Dtpsy_1477 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, C-terminal YP_004388547.1 TIGRFAM: Dihydropteroate synthase; KEGG: ajs:Ajs_2382 dihydropteroate synthase; PFAM: Pterin-binding YP_004388548.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: dia:Dtpsy_1475 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular YP_004388549.1 PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dia:Dtpsy_1474 ribosomal RNA methyltransferase RrmJ/FtsJ YP_004388550.1 PFAM: RNA-binding, CRM domain; KEGG: dia:Dtpsy_1473 protein of unknown function UPF0044 YP_004388551.1 KEGG: dac:Daci_4928 hypothetical protein YP_004388552.1 KEGG: ajs:Ajs_2388 hypothetical protein YP_004388553.1 KEGG: dia:Dtpsy_1469 transcription elongation factor GreA; TIGRFAM: Transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal YP_004388554.1 SMART: Methylglyoxal synthase-like domain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; KEGG: dia:Dtpsy_1458 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; Methylglyoxal synthase-like domain; Carbamoyl-phosphate synthase, large subunit, N-terminal YP_004388555.1 TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: aav:Aave_2610 carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal YP_004388556.1 PFAM: Integrase, catalytic core, phage; KEGG: dar:Daro_2526 phage integrase YP_004388557.1 PFAM: Prophage CP4-57 regulatory YP_004388558.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004388559.1 KEGG: sfu:Sfum_1898 hypothetical protein YP_004388560.1 PFAM: Integrase, catalytic core, phage; KEGG: ppu:PP_2501 phage integrase, putative YP_004388561.1 KEGG: pwa:Pecwa_1723 hypothetical protein YP_004388562.1 PFAM: ATP-grasp fold, RimK-type; KEGG: psb:Psyr_2651 hypothetical protein YP_004388563.1 KEGG: pwa:Pecwa_1721 hypothetical protein YP_004388565.1 KEGG: rcu:RCOM_1905080 hypothetical protein YP_004388566.1 KEGG: dze:Dd1591_3709 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory YP_004388567.1 PFAM: DNA helicase, UvrD/REP type; KEGG: rpf:Rpic12D_4971 DNA helicase II YP_004388568.1 KEGG: rpf:Rpic12D_4970 ATP-dependent OLD family endonuclease YP_004388569.1 PFAM: Histone-like bacterial DNA-binding protein; KEGG: pol:Bpro_1551 histone-like DNA-binding protein YP_004388570.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_1457 transposase IS3/IS911 family protein YP_004388571.1 PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region YP_004388572.1 PFAM: Methyltransferase type 12; KEGG: pol:Bpro_4843 methyltransferase type 12 YP_004388573.1 PFAM: Copper binding periplasmic protein CusF; KEGG: ajs:Ajs_2667 hypothetical protein YP_004388574.1 PFAM: Blue (type 1) copper domain; KEGG: ajs:Ajs_2668 blue (type1) copper domain-containing protein YP_004388575.1 PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: ajs:Ajs_2669 multicopper oxidase, type 3 YP_004388576.1 PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_2670 putative copper resistance-related lipoprotein YP_004388577.1 KEGG: ajs:Ajs_2671 hypothetical protein YP_004388579.1 TIGRFAM: Flagellar hook-basal body complex protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; KEGG: ajs:Ajs_2673 flagellar hook-basal body complex subunit FliE; PFAM: Flagellar hook-basal body complex protein FliE YP_004388580.1 TIGRFAM: Acetate kinase; KEGG: ajs:Ajs_2674 acetate kinase; PFAM: Acetate/butyrate kinase YP_004388581.1 manually curated; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: ajs:Ajs_2675 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR YP_004388582.1 KEGG: ajs:Ajs_2676 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase YP_004388583.1 KEGG: ajs:Ajs_2677 hypothetical protein YP_004388584.1 PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; KEGG: ajs:Ajs_2678 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase YP_004388585.1 KEGG: ajs:Ajs_2679 hypothetical protein YP_004388586.1 SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type II; KEGG: ajs:Ajs_2680 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004388587.1 PFAM: ABC-1; KEGG: ajs:Ajs_2681 2-octaprenylphenol hydroxylase YP_004388588.1 KEGG: ajs:Ajs_2682 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004388589.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2683 methyltransferase type 11 YP_004388590.1 KEGG: ajs:Ajs_1500 hypothetical protein YP_004388591.1 KEGG: ajs:Ajs_2687 hypothetical protein YP_004388592.1 KEGG: ajs:Ajs_2688 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF YP_004388593.1 KEGG: ajs:Ajs_2689 phosphoribosylpyrophosphate synthetase; TIGRFAM: Phosphoribosyl pyrophosphokinase YP_004388594.1 KEGG: ajs:Ajs_2690 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase, C-terminal; Glycosyl transferase, family 3; TIGRFAM: Thymidine phosphorylase, type 2; HAMAP: Thymidine phosphorylase, type 2; SMART: Pyrimidine nucleoside phosphorylase, C-terminal YP_004388595.1 KEGG: ajs:Ajs_2691 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like YP_004388596.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2692 hypothetical protein YP_004388597.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2693 hypothetical protein YP_004388598.1 PFAM: LemA; KEGG: ajs:Ajs_2694 LemA family protein YP_004388599.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_2695 major facilitator superfamily transporter YP_004388600.1 TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2696 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004388601.1 KEGG: ajs:Ajs_2697 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related YP_004388603.1 manually curated; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: ajs:Ajs_2699 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR YP_004388604.1 KEGG: ajs:Ajs_2700 hypothetical protein YP_004388605.1 KEGG: dac:Daci_0472 hypothetical protein YP_004388606.1 KEGG: ajs:Ajs_2702 hypothetical protein YP_004388607.1 KEGG: ajs:Ajs_2703 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004388608.1 TIGRFAM: Secretion protein HlyD; KEGG: ajs:Ajs_1482 RND family efflux transporter MFP subunit YP_004388609.1 PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_1481 outer membrane efflux protein YP_004388610.1 PFAM: Protein of unknown function DUF2789; KEGG: ajs:Ajs_1480 hypothetical protein YP_004388611.1 KEGG: ajs:Ajs_1479 membrane protein-like protein YP_004388612.1 KEGG: dia:Dtpsy_2188 hypothetical protein YP_004388613.1 TIGRFAM: YVTN beta-propeller repeat; KEGG: ajs:Ajs_1471 YVTN beta-propeller repeat-containing protein YP_004388614.1 KEGG: ajs:Ajs_1470 hypothetical protein YP_004388615.1 SMART: TRASH; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lbf:LBF_0420 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated domain; YHS; Haloacid dehalogenase-like hydrolase YP_004388616.1 KEGG: lbf:LBF_0421 hypothetical protein YP_004388617.1 KEGG: ajs:Ajs_1467 heavy metal transport/detoxification protein; manually curated; PFAM: Heavy metal transport/detoxification protein YP_004388618.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ajs:Ajs_1466 isoprenylcysteine carboxyl methyltransferase YP_004388619.1 KEGG: ajs:Ajs_1465 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2933 YP_004388620.1 KEGG: ajs:Ajs_1464 hypothetical protein YP_004388621.1 KEGG: ajs:Ajs_1463 hypothetical protein YP_004388622.1 TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: ajs:Ajs_1461 two component heavy metal response transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004388623.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004388624.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004388625.1 KEGG: dat:HRM2_14600 hypothetical protein YP_004388626.1 PFAM: MTH538 TIR-like domain; KEGG: hdn:Hden_3446 hypothetical protein YP_004388628.1 KEGG: vap:Vapar_2079 hypothetical protein; manually curated; PFAM: Thioesterase superfamily YP_004388629.1 manually curated; KEGG: ajs:Ajs_1603 hypothetical protein YP_004388630.1 manually curated; KEGG: ajs:Ajs_1602 hypothetical protein YP_004388631.1 KEGG: ajs:Ajs_1601 hypothetical protein YP_004388632.1 TIGRFAM: ParB-related, ThiF-related cassette, protein D; KEGG: ajs:Ajs_1600 hypothetical protein YP_004388633.1 manually curated; KEGG: ajs:Ajs_1599 hypothetical protein YP_004388634.1 KEGG: ajs:Ajs_1598 nucleoid protein H-NS; PFAM: Histone-like nucleoid-structuring protein H-NS; SMART: Histone-like nucleoid-structuring protein H-NS YP_004388636.1 KEGG: ajs:Ajs_1596 hypothetical protein; TIGRFAM: ParB-related, ThiF-related cassette, protein A; PFAM: Domain of unknown function DUF2016 YP_004388637.1 TIGRFAM: ParB-related, ThiF-related cassette, protein B; KEGG: ajs:Ajs_1595 hypothetical protein YP_004388638.1 KEGG: pol:Bpro_2745 putative transposase YP_004388639.1 KEGG: pol:Bpro_2744 hypothetical protein YP_004388640.1 TIGRFAM: ParB-related, ThiF-related cassette, protein C; KEGG: ajs:Ajs_1593 hypothetical protein YP_004388641.1 TIGRFAM: ParB-related, ThiF-related cassette, protein E; KEGG: ajs:Ajs_1592 hypothetical protein YP_004388642.1 TIGRFAM: ParB-related, ThiF-related cassette, ParB; ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_1591 ParB family protein; SMART: ParB-like nuclease YP_004388643.1 PFAM: DNA methylase, adenine-specific; KEGG: hch:HCH_07036 type I restriction-modification system methyltransferase subunit YP_004388644.1 KEGG: hch:HCH_07035 hypothetical protein YP_004388645.1 KEGG: seh:SeHA_C1592 helicase C2; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, ATP-dependent, c2 type YP_004388646.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_004388647.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911 YP_004388648.1 KEGG: ajs:Ajs_1561 hypothetical protein YP_004388649.1 KEGG: ajs:Ajs_1560 hypothetical protein YP_004388650.1 KEGG: ajs:Ajs_1559 hypothetical protein YP_004388651.1 KEGG: ajs:Ajs_1558 hypothetical protein YP_004388652.1 KEGG: ajs:Ajs_1556 phage P4 alpha zinc-binding domain-containing protein; PFAM: Phage P4 alpha, zinc-binding; SMART: Phage P4 alpha, zinc-binding YP_004388653.1 KEGG: ajs:Ajs_1554 hypothetical protein YP_004388654.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: ajs:Ajs_1553 putative phage repressor YP_004388655.1 KEGG: ajs:Ajs_1552 hypothetical protein YP_004388656.1 KEGG: ajs:Ajs_1551 hypothetical protein YP_004388657.1 PFAM: Uncharacterised protein family, helicase/relaxase, putative; KEGG: ajs:Ajs_1550 FHA domain-containing protein YP_004388658.1 TIGRFAM: Conjugative coupling factor TraG/TraD; KEGG: ajs:Ajs_1549 hypothetical protein YP_004388659.1 KEGG: ajs:Ajs_1548 hypothetical protein YP_004388660.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: ajs:Ajs_1547 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3 YP_004388661.1 KEGG: ajs:Ajs_1546 hypothetical protein YP_004388662.1 KEGG: ajs:Ajs_1545 hypothetical protein YP_004388663.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_1544 lytic transglycosylase, catalytic YP_004388664.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dar:Daro_2312 OmpA/MotB YP_004388665.1 KEGG: ajs:Ajs_1542 hypothetical protein YP_004388666.1 KEGG: ajs:Ajs_1541 TraL family protein; TIGRFAM: Type IV conjugative transfer system, protein TraL; PFAM: Type IV conjugative transfer system, protein TraL YP_004388667.1 TIGRFAM: Pilus assembly TraE; KEGG: ajs:Ajs_1540 plasmid-like conjugative transfer protein TraE YP_004388668.1 KEGG: ajs:Ajs_1539 hypothetical protein YP_004388669.1 KEGG: ajs:Ajs_1538 TraB pilus assembly family protein YP_004388670.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_1537 periplasmic thiol:disulfide interchange protein YP_004388671.1 KEGG: ajs:Ajs_1536 hypothetical protein; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV YP_004388672.1 TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_1535 hypothetical protein YP_004388673.1 KEGG: ajs:Ajs_1534 hypothetical protein YP_004388674.1 KEGG: ajs:Ajs_1533 hypothetical protein; TIGRFAM: Peptidase S26C, conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region YP_004388675.1 KEGG: ajs:Ajs_1532 hypothetical protein YP_004388676.1 TIGRFAM: Type-F conjugative transfer system protein TraW; KEGG: ajs:Ajs_1531 membrane lipoprotein lipid attachment site YP_004388677.1 PFAM: TraU; KEGG: ajs:Ajs_1530 TraU family protein YP_004388678.1 KEGG: ajs:Ajs_1529 hypothetical protein; TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC, subgroup; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC YP_004388679.1 KEGG: ajs:Ajs_1528 conjugal transfer mating pair stabilization protein TraN YP_004388680.1 KEGG: ajs:Ajs_1527 hypothetical protein YP_004388681.1 TIGRFAM: Type IV conjugative transfer system protein TraF; KEGG: ajs:Ajs_1526 hypothetical protein YP_004388682.1 PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_1525 TraH family protein YP_004388683.1 PFAM: TraG-like, N-terminal; KEGG: ajs:Ajs_1524 TraG domain-containing protein YP_004388684.1 KEGG: ajs:Ajs_1521 hypothetical protein YP_004388686.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: mmu:16621 kallikrein B, plasma 1; SMART: Peptidase S1/S6, chymotrypsin/Hap YP_004388687.1 KEGG: dia:Dtpsy_1455 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004388688.1 TIGRFAM: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_1454 integration host factor subunit alpha; SMART: Histone-like bacterial DNA-binding protein YP_004388689.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: ajs:Ajs_2395 phenylalanyl-tRNA synthetase subunit beta; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial YP_004388690.1 KEGG: dia:Dtpsy_1452 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal YP_004388691.1 TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: ajs:Ajs_2397 50S ribosomal protein L20; PFAM: Ribosomal protein L20 YP_004388692.1 KEGG: aav:Aave_2857 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35, non-mitochondrial; PFAM: Ribosomal protein L35 YP_004388693.1 PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; manually curated; TIGRFAM: Translation initiation factor 3; KEGG: ajs:Ajs_2399 translation initiation factor 3; HAMAP: Translation initiation factor 3 YP_004388694.1 TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; KEGG: ajs:Ajs_2400 threonyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD YP_004388695.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: bbr:BB4124 putative enzyme-regulator fusion protein YP_004388696.1 TIGRFAM: Isocitrate lyase; KEGG: dia:Dtpsy_1447 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase YP_004388697.1 PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_2402 hypothetical protein YP_004388698.1 KEGG: dia:Dtpsy_1444 SWIB/MDM2 domain protein; PFAM: SWIB/MDM2 domain; SMART: SWIB domain YP_004388699.1 KEGG: dia:Dtpsy_1443 BFD domain protein (2Fe-2S)-binding domain protein; manually curated; PFAM: BFD-like [2Fe-2S]-binding domain YP_004388700.1 KEGG: dia:Dtpsy_1442 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: TonB, C-terminal YP_004388701.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_1441 MotA/TolQ/ExbB proton channel YP_004388702.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2408 biopolymer transport protein ExbD/TolR YP_004388703.1 PFAM: Hemin uptake protein HemP; KEGG: ajs:Ajs_2409 hypothetical protein YP_004388704.1 PFAM: Domain of unknown function DUF336; KEGG: dia:Dtpsy_1438 protein of unknown function DUF336 YP_004388705.1 PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: dia:Dtpsy_1437 protein of unknown function UPF0005 YP_004388706.1 KEGG: rme:Rmet_3623 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004388707.1 PFAM: Major facilitator superfamily MFS-1; KEGG: reu:Reut_B5563 major facilitator transporter YP_004388708.1 KEGG: ajs:Ajs_2412 hypothetical protein YP_004388709.1 PFAM: Small multidrug resistance protein; KEGG: dia:Dtpsy_1617 small multidrug resistance protein YP_004388710.1 PFAM: Chromate transporter; KEGG: dia:Dtpsy_1615 chromate transporter YP_004388711.1 PFAM: Chromate transporter; KEGG: dia:Dtpsy_1614 chromate transporter YP_004388712.1 KEGG: dia:Dtpsy_1612 silent information regulator protein Sir2; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2 YP_004388713.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_1611 regulatory protein TetR YP_004388714.1 PFAM: Protein of unknown function DUF1428; KEGG: dia:Dtpsy_1610 protein of unknown function DUF1428 YP_004388715.1 PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: pol:Bpro_2417 glutathione-dependent formaldehyde-activating, GFA YP_004388716.1 KEGG: ajs:Ajs_2265 3-demethylubiquinone-9 3-methyltransferase YP_004388717.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: dia:Dtpsy_1608 activator of HSP90 ATPase 1 family protein YP_004388718.1 KEGG: gur:Gura_0848 3-demethylubiquinone-9 3-methyltransferase YP_004388719.1 KEGG: dac:Daci_4029 hypothetical protein YP_004388720.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: dar:Daro_2725 hypothetical protein YP_004388721.1 TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: dia:Dtpsy_1606 RNA methyltransferase, TrmH family, group 3; SMART: RNA 2-O ribose methyltransferase, substrate binding YP_004388722.1 KEGG: dia:Dtpsy_1605 serine/threonine transporter SstT; HAMAP: Serine/threonine transporter SstT; PFAM: Sodium:dicarboxylate symporter YP_004388723.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1604 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004388724.1 KEGG: dia:Dtpsy_1603 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL YP_004388725.1 PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: dia:Dtpsy_1602 integral membrane protein YP_004388726.1 KEGG: dia:Dtpsy_1601 Cys/Met metabolism pyridoxal-phosphate-dependent protein; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004388727.1 KEGG: dia:Dtpsy_1600 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria YP_004388728.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: ajs:Ajs_2275 sulphate transporter YP_004388729.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_1598 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004388730.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_1597 cobyrinic acid ac-diamide synthase YP_004388731.1 TIGRFAM: Propionate--CoA ligase; KEGG: dia:Dtpsy_1825 propionyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004388732.1 PFAM: Isochorismatase-like; KEGG: dia:Dtpsy_1824 isochorismatase hydrolase YP_004388733.1 KEGG: dia:Dtpsy_1823 glucose sorbosone dehydrogenase YP_004388734.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1814 transcriptional regulator, LysR family YP_004388735.1 TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase [acylating]; PFAM: Aldehyde dehydrogenase domain YP_004388736.1 PFAM: Protein of unknown function DUF1311; KEGG: ajs:Ajs_2008 hypothetical protein YP_004388737.1 KEGG: ajs:Ajs_2007 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain YP_004388738.1 PFAM: TfoX, N-terminal; KEGG: dia:Dtpsy_1810 hypothetical protein YP_004388739.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: dia:Dtpsy_1809 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004388740.1 TIGRFAM: Methyltransferase FkbM; KEGG: ter:Tery_1754 FkbM family methyltransferase YP_004388741.1 manually curated; KEGG: har:HEAR0421 hypothetical protein YP_004388742.1 KEGG: dia:Dtpsy_1801 hypothetical protein YP_004388743.1 TIGRFAM: Tryptophan synthase, beta chain; KEGG: dia:Dtpsy_1800 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004388744.1 PFAM: Protein of unknown function DUF469; KEGG: dia:Dtpsy_1799 protein of unknown function DUF469 YP_004388745.1 SMART: SAF domain; TIGRFAM: Galactarate dehydratase; KEGG: ajs:Ajs_1998 galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain YP_004388746.1 KEGG: ajs:Ajs_1997 hypothetical protein YP_004388747.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: ctt:CtCNB1_0239 mandelate racemase/muconate lactonizing; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004388748.1 KEGG: ctt:CtCNB1_0240 GntR-like protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004388749.1 KEGG: dia:Dtpsy_1794 hypothetical protein YP_004388750.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; HAMAP: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: dia:Dtpsy_1793 5-dehydro-4-deoxyglucarate dehydratase YP_004388751.1 KEGG: ajs:Ajs_1992 hypothetical protein YP_004388752.1 KEGG: ajs:Ajs_1991 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004388753.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: dia:Dtpsy_1790 glucarate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004388754.1 PFAM: Aldehyde dehydrogenase domain; KEGG: ctt:CtCNB1_0246 aldehyde dehydrogenase YP_004388755.1 PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: dia:Dtpsy_1788 leucyl/phenylalanyl-tRNA--protein transferase YP_004388756.1 KEGG: dia:Dtpsy_1787 arginyl-tRNA-protein transferase; HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal YP_004388757.1 PFAM: Pirin, N-terminal; KEGG: ajs:Ajs_1985 pirin domain-containing protein YP_004388758.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1784 transcriptional regulator, LysR family YP_004388759.1 PFAM: Amine oxidase; KEGG: ajs:Ajs_1983 FAD dependent oxidoreductase YP_004388760.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; TIGRFAM: Glutamyl-Q tRNA(Asp) synthetase; HAMAP: Glutamyl-Q tRNA(Asp) synthetase; KEGG: ajs:Ajs_1982 glutamate--tRNA ligase YP_004388761.1 TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; KEGG: dia:Dtpsy_1781 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase YP_004388762.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_1780 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004388763.1 TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; KEGG: dia:Dtpsy_1779 alanyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD YP_004388764.1 KEGG: vap:Vapar_5222 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase YP_004388765.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ctt:CtCNB1_4596 tripartite ATP-independent periplasmic YP_004388766.1 KEGG: ctt:CtCNB1_4595 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004388767.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ctt:CtCNB1_4594 TRAP dicarboxylate transporter, DctP subunit YP_004388768.1 KEGG: bpd:BURPS668_A0565 malate/L-lactate dehydrogenase family protein; PFAM: Malate/L-lactate dehydrogenase YP_004388769.1 KEGG: vap:Vapar_5216 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004388770.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: dia:Dtpsy_1777 pseudouridine synthase YP_004388771.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dia:Dtpsy_1832 GCN5-related N-acetyltransferase YP_004388772.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; KEGG: dia:Dtpsy_1831 3-deoxy-D-manno-octulosonic-acid transferase domain protein YP_004388773.1 KEGG: dia:Dtpsy_1830 phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004388774.1 KEGG: dac:Daci_0982 hypothetical protein YP_004388775.1 KEGG: vei:Veis_0062 hypothetical protein YP_004388776.1 PFAM: KduI/IolB isomerase; KEGG: rsc:RCFBP_20182 myo-inositol catabolism protein, protein IolB YP_004388777.1 KEGG: dac:Daci_0985 ribokinase-like domain-containing protein; PFAM: Protein of unknown function DUF2090; Carbohydrate/purine kinase YP_004388778.1 PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: dac:Daci_0986 RpiR family transcriptional regulator YP_004388779.1 KEGG: ajs:Ajs_2020 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada; PFAM: AlkA, N-terminal; Ada DNA repair, metal-binding; HTH transcriptional regulator, AraC; HhH-GPD domain; SMART: Helix-turn-helix, AraC type, DNA binding domain; HhH-GPD domain YP_004388780.1 KEGG: dia:Dtpsy_1828 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_004388781.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_1827 protein of unknown function DUF6 transmembrane YP_004388782.1 KEGG: aav:Aave_3080 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain; Adenylyl cyclase class-3/4/guanylyl cyclase YP_004388783.1 KEGG: dia:Dtpsy_1593 muramoyltetrapeptide carboxypeptidase; PFAM: Peptidase S66, LD-carboxypeptidase A YP_004388784.1 PFAM: CMP/dCMP deaminase, zinc-binding; Alpha/beta hydrolase fold-1; KEGG: ajs:Ajs_2282 CMP/dCMP deaminase, zinc-binding YP_004388785.1 PFAM: Negative transcriptional regulator; KEGG: vap:Vapar_2794 FMN-binding negative transcriptional regulator YP_004388786.1 PFAM: Peptidase U32; KEGG: dia:Dtpsy_1589 peptidase U32 YP_004388787.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: dia:Dtpsy_1588 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004388788.1 KEGG: dia:Dtpsy_1587 protein of unknown function DUF323; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor YP_004388789.1 KEGG: dia:Dtpsy_1586 methyltransferase; TIGRFAM: Methyltransferase-like; PFAM: Protein of unknown function DUF2260 YP_004388790.1 KEGG: dia:Dtpsy_1585 OmpW family protein; manually curated; PFAM: Outer membrane protein, OmpW YP_004388791.1 PFAM: Protein of unknown function DUF808; KEGG: ajs:Ajs_2290 hypothetical protein YP_004388792.1 TIGRFAM: Phosphoribosylformylglycinamidine synthase; KEGG: dia:Dtpsy_1582 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein YP_004388793.1 TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: dia:Dtpsy_1581 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain YP_004388794.1 KEGG: dia:Dtpsy_1580 PII uridylyl-transferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Domain of unknown function DUF294, nucleotidyltransferase putative; Metal-dependent phosphohydrolase, HD subdomain; Amino acid-binding ACT; TIGRFAM: Protein-PII uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD domain YP_004388795.1 KEGG: ctt:CtCNB1_3177 uracil-xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease YP_004388796.1 TIGRFAM: Formylmethionine deformylase; KEGG: dac:Daci_4855 peptide deformylase; PFAM: Formylmethionine deformylase YP_004388797.1 PFAM: Protein of unknown function DUF454; KEGG: ajs:Ajs_2296 hypothetical protein YP_004388798.1 PFAM: Protein of unknown function DUF3423 YP_004388799.1 KEGG: pzu:PHZ_c2128 hypothetical protein YP_004388800.1 TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; KEGG: aav:Aave_2572 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004388801.1 PFAM: Protein of unknown function DUF192; KEGG: dia:Dtpsy_1560 protein of unknown function DUF192 YP_004388802.1 TIGRFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; KEGG: ajs:Ajs_2300 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type YP_004388803.1 KEGG: ajs:Ajs_2301 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal YP_004388804.1 PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exonuclease VII, large subunit; KEGG: ajs:Ajs_2302 exodeoxyribonuclease VII large subunit YP_004388805.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_1556 MotA/TolQ/ExbB proton channel YP_004388806.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dia:Dtpsy_1555 biopolymer transport protein ExbD/TolR YP_004388807.1 TIGRFAM: Tetraacyldisaccharide 4'-kinase; KEGG: ajs:Ajs_2305 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase YP_004388808.1 PFAM: Uncharacterised protein family UPF0434/Trm112; KEGG: dia:Dtpsy_1553 protein of unknown function DUF343 YP_004388809.1 PFAM: Acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: ajs:Ajs_2307 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_004388810.1 KEGG: dia:Dtpsy_1551 adenylate kinase; TIGRFAM: Adenylate kinase, subfamily; PFAM: Adenylate kinase; Adenylate kinase, active site lid domain YP_004388811.1 PFAM: Asparaginase/glutaminase; KEGG: dia:Dtpsy_1550 asparaginase; SMART: Asparaginase/glutaminase YP_004388812.1 KEGG: dia:Dtpsy_1549 LexA repressor; TIGRFAM: Peptidase S24, LexA repressor; PFAM: LexA, DNA-binding domain; Peptidase S24/S26A/S26B, conserved region YP_004388813.1 KEGG: ajs:Ajs_2311 hypothetical protein YP_004388814.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated domain; Helicase, C-terminal; Domain of unknown function DUF1605; KEGG: dia:Dtpsy_1546 ATP-dependent helicase HrpA; SMART: Helicase-associated domain; DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; Helicase, C-terminal YP_004388815.1 TIGRFAM: Thiolase; KEGG: ajs:Ajs_2317 acetyl-CoA acetyltransferases; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004388816.1 KEGG: dia:Dtpsy_1541 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004388817.1 PFAM: BioY protein; KEGG: dia:Dtpsy_1540 BioY protein YP_004388818.1 PFAM: Cobalt transport protein; KEGG: ajs:Ajs_2320 cobalt transport protein YP_004388819.1 KEGG: dia:Dtpsy_1538 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004388820.1 KEGG: bte:BTH_II1296 hypothetical protein YP_004388821.1 KEGG: gdj:Gdia_1658 hypothetical protein YP_004388822.1 TIGRFAM: Glyoxalase I; KEGG: dia:Dtpsy_1870 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004388823.1 KEGG: vap:Vapar_2120 hypothetical protein YP_004388825.1 manually curated; KEGG: bcm:Bcenmc03_6935 hypothetical protein YP_004388826.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004388827.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10 YP_004388828.1 PFAM: Protein of unknown function DUF736; KEGG: dac:Daci_0462 hypothetical protein YP_004388829.1 KEGG: dac:Daci_0461 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004388830.1 KEGG: tgr:Tgr7_1875 putative lipoprotein YP_004388831.1 PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein YP_004388832.1 KEGG: rpi:Rpic_2619 hypothetical protein YP_004388833.1 PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein YP_004388834.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dac:Daci_2720 cobyrinic acid ac-diamide synthase YP_004388835.1 KEGG: bpt:Bpet2187 hypothetical protein YP_004388836.1 KEGG: rme:Rmet_1257 hypothetical protein YP_004388837.1 PFAM: Peptidase S26, conserved region; KEGG: dia:Dtpsy_1292 TraF peptidase. Serine peptidase. MEROPS family S26C YP_004388838.1 KEGG: dac:Daci_0453 hypothetical protein YP_004388839.1 PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase YP_004388840.1 PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: mxa:MXAN_6138 riboflavin biosynthesis protein RibD domain-containing protein YP_004388841.1 PFAM: Uncharacterised protein family UPF0753; KEGG: mei:Msip34_2093 hypothetical protein YP_004388842.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: mei:Msip34_2092 NADH dehydrogenase subunit L YP_004388843.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: mep:MPQ_2042 transcriptional regulator, LysR family YP_004388844.1 KEGG: lch:Lcho_3347 integral membrane protein TerC; TIGRFAM: Integral membrane protein TerC, riboswitch-linked; PFAM: Integral membrane protein TerC YP_004388845.1 KEGG: lch:Lcho_3349 hypothetical protein YP_004388846.1 KEGG: rme:Rmet_5308 hypothetical protein YP_004388847.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: tin:Tint_2185 transcriptional regulator, LysR family YP_004388848.1 KEGG: reu:Reut_A0042 glutathione peroxidase; manually curated; PFAM: Glutathione peroxidase YP_004388849.1 PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: bav:BAV2083 hypothetical protein YP_004388850.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1994 hypothetical protein YP_004388851.1 PFAM: Deoxyribodipyrimidine photolyase-related protein; KEGG: ctt:CtCNB1_1993 deoxyribodipyrimidine photolyase-related protein YP_004388852.1 KEGG: reu:Reut_C6236 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain YP_004388853.1 PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; KEGG: tmz:Tmz1t_3951 deoxyribodipyrimidine photo-lyase YP_004388854.1 PFAM: Lipocalin-like; KEGG: reu:Reut_C6237 outer membrane lipoprotein, lipocalin YP_004388855.1 KEGG: reu:Reut_C6238 regulatory protein, MerR; PFAM: Cobalamin (vitamin B12)-binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004388856.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: bav:BAV2082 dehydrogenase YP_004388857.1 PFAM: Protein of unknown function DUF1365; KEGG: bav:BAV2081 hypothetical protein YP_004388858.1 KEGG: dia:Dtpsy_2396 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase YP_004388859.1 KEGG: dia:Dtpsy_2394 hypothetical protein YP_004388860.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bav:BAV2078 transporter YP_004388861.1 KEGG: dia:Dtpsy_2392 putative lipoprotein YP_004388862.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bav:BAV2076 short-chain dehydrogenase YP_004388863.1 KEGG: bav:BAV2075 isomerase YP_004388864.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: ajs:Ajs_1800 glutathione S-transferase domain-containing protein YP_004388865.1 KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal YP_004388866.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: dia:Dtpsy_3510 transcriptional regulator, LysR family YP_004388867.1 KEGG: bvi:Bcep1808_2622 integrase catalytic subunit YP_004388868.1 KEGG: mpt:Mpe_A2996 putative transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004388869.1 PFAM: Protein of unknown function DUF1016; KEGG: pau:PA14_31270 hypothetical protein YP_004388870.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein YP_004388871.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bpt:Bpet1402 transcriptional regulator CatR YP_004388872.1 TIGRFAM: KDPG/KHG aldolase; KEGG: ajs:Ajs_2048 2-keto-3-deoxy-phosphogluconate aldolase; PFAM: KDPG/KHG aldolase YP_004388873.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: ajs:Ajs_2049 phosphogluconate dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004388874.1 KEGG: dia:Dtpsy_1873 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004388875.1 KEGG: dia:Dtpsy_1874 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004388876.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dia:Dtpsy_1875 tripartite ATP-independent periplasmic transporter DctQ component YP_004388877.1 PFAM: Shikimate kinase; manually curated; KEGG: ajs:Ajs_2053 carbohydrate kinase; TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase YP_004388878.1 KEGG: ajs:Ajs_2054 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004388879.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: dia:Dtpsy_1896 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core YP_004388880.1 KEGG: dia:Dtpsy_1897 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core YP_004388881.1 SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dia:Dtpsy_1898 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004388882.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: dia:Dtpsy_1899 outer membrane assembly lipoprotein YfiO YP_004388883.1 SMART: Helicase, ATP-dependent, c2 type; KEGG: ajs:Ajs_1828 helicase C2 YP_004388884.1 KEGG: dia:Dtpsy_1901 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like YP_004388885.1 KEGG: ajs:Ajs_1826 hypothetical protein YP_004388886.1 PFAM: ATPase, AFG1-like; KEGG: dia:Dtpsy_1903 AFG1-family ATPase YP_004388887.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: ajs:Ajs_1824 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004388888.1 TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: dia:Dtpsy_1905 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004388889.1 SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: ajs:Ajs_1822 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component YP_004388890.1 PFAM: Uncharacterised protein family UPF0118; KEGG: dia:Dtpsy_1907 protein of unknown function UPF0118 YP_004388891.1 KEGG: dia:Dtpsy_1908 hypothetical protein YP_004388892.1 KEGG: dia:Dtpsy_1909 hypothetical protein YP_004388893.1 PFAM: Protein of unknown function DUF1446; KEGG: dia:Dtpsy_1910 protein of unknown function DUF1446 YP_004388894.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_1817 LysR family transcriptional regulator YP_004388895.1 PFAM: UspA; KEGG: ajs:Ajs_1816 UspA domain-containing protein YP_004388896.1 PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: dia:Dtpsy_1915 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004388897.1 PFAM: Binding-protein-dependent transport systems inner membrane component; Mitochondrial distribution and morphology protein family 31/32, fungi; KEGG: dia:Dtpsy_1916 binding-protein-dependent transport systems inner membrane component YP_004388898.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1811 binding-protein-dependent transport systems inner membrane component YP_004388899.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: dia:Dtpsy_2487 putative protein-S-isoprenylcysteine methyltransferase-like protein YP_004388900.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dia:Dtpsy_1918 extracellular solute-binding protein family 5 YP_004388901.1 KEGG: dia:Dtpsy_1919 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004388902.1 PFAM: Drug/metabolite transporter; KEGG: rsc:RCFBP_10755 multidrug resistance efflux transporter YP_004388903.1 PFAM: Protein of unknown function DUF465; KEGG: cvi:CV_3311 hypothetical protein YP_004388904.1 KEGG: dia:Dtpsy_2251 DNA ligase; PFAM: DNA ligase, ATP-dependent, central YP_004388905.1 KEGG: aav:Aave_4673 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC YP_004388906.1 KEGG: ajs:Ajs_2762 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal YP_004388907.1 KEGG: dia:Dtpsy_2253 hypothetical protein YP_004388908.1 KEGG: dia:Dtpsy_2254 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004388909.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rfr:Rfer_0879 LysR family transcriptional regulator YP_004388910.1 KEGG: ajs:Ajs_2520 thiamine pyrophosphate protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain YP_004388912.1 PFAM: Protein of unknown function DUF1778; KEGG: ctt:CtCNB1_1524 hypothetical protein YP_004388913.1 manually curated; KEGG: ecc:c5378 hypothetical protein YP_004388914.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004388915.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004388916.1 KEGG: rme:Rmet_3347 hypothetical protein YP_004388917.1 PFAM: Transposase, IS4-like; KEGG: aav:Aave_4617 transposase, IS4 family protein YP_004388918.1 KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; Extracellular Endonuclease, subunit A YP_004388919.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66 YP_004388920.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_004388921.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911 YP_004388922.1 manually curated; KEGG: alv:Alvin_3273 hypothetical protein YP_004388923.1 TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: ctt:CtCNB1_1504 hypothetical protein YP_004388924.1 KEGG: har:HEAR0514 hypothetical protein; TIGRFAM: Putative phage-type endonuclease; PFAM: YqaJ viral recombinase family YP_004388925.1 KEGG: pag:PLES_23531 hypothetical protein YP_004388928.1 KEGG: abn:AB57_0651 hypothetical protein YP_004388929.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: rsl:RPSI07_1481 putative HTH-type transcriptional regulator; SMART: Helix-turn-helix type 3 YP_004388930.1 KEGG: dap:Dacet_0600 hypothetical protein YP_004388931.1 KEGG: vap:Vapar_6015 DNA polymerase II; PFAM: DNA-directed DNA polymerase, family B, conserved region; DNA-directed DNA polymerase, family B, exonuclease domain; SMART: DNA-directed DNA polymerase, family B YP_004388932.1 KEGG: ppg:PputGB1_4754 transposase YP_004388933.1 PFAM: Prophage CP4-57 regulatory; KEGG: ppg:PputGB1_4755 phage transcriptional regulator, AlpA YP_004388934.1 KEGG: ppg:PputGB1_4756 hypothetical protein YP_004388935.1 PFAM: Integrase, catalytic core, phage; KEGG: ecp:ECP_1909 Int/Topo IB signature motif; other site YP_004388936.1 PFAM: Lytic transglycosylase-like, catalytic; Sel1-like; KEGG: rfr:Rfer_0483 lytic transglycosylase, catalytic YP_004388937.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1711 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR YP_004388938.1 KEGG: tfu:Tfu_1300 DitJ-like CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004388939.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: kko:Kkor_1470 carboxymuconolactone decarboxylase YP_004388940.1 KEGG: axy:AXYL_02565 ABC transporter family protein 37; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004388941.1 PFAM: ABC transporter-like; KEGG: axy:AXYL_02566 ABC transporter family protein 38; SMART: ATPase, AAA+ type, core YP_004388942.1 PFAM: ABC transporter permease; KEGG: axy:AXYL_02567 inner-membrane translocator 29 YP_004388943.1 PFAM: ABC transporter permease; KEGG: axy:AXYL_02568 inner-membrane translocator 30 YP_004388944.1 PFAM: Extracellular ligand-binding receptor; KEGG: axy:AXYL_02569 ABC branched chain amino acid family transporter, periplasmic ligand binding protein YP_004388945.1 KEGG: rpb:RPB_4328 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004388946.1 KEGG: bxe:Bxe_B2740 lipid-transfer protein; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004388947.1 KEGG: azl:AZL_a10790 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004388948.1 KEGG: rme:Rmet_3794 putative TetR family transcriptional regulator YP_004388950.1 KEGG: ajs:Ajs_1799 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; Twin-arginine translocation pathway, signal sequence; PFAM: Bacterial extracellular solute-binding, family 1 YP_004388951.1 PFAM: Fe(II) trafficking protein YggX; KEGG: ctt:CtCNB1_3078 Fe(II) trafficking protein YggX YP_004388952.1 PFAM: Uncharacterised protein family UPF0126; KEGG: dia:Dtpsy_1925 protein of unknown function UPF0126 YP_004388953.1 TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal; HAMAP: tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; KEGG: dac:Daci_4644 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; Domain of unknown function DUF752 YP_004388954.1 PFAM: Protein of unknown function DUF81; KEGG: aav:Aave_3052 hypothetical protein YP_004388955.1 PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; KEGG: dia:Dtpsy_1927 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_004388956.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: dia:Dtpsy_1928 hypothetical protein YP_004388957.1 KEGG: ajs:Ajs_1793 phosphoadenylylsulfate reductase (thioredoxin); PFAM: Phosphoadenosine phosphosulphate reductase YP_004388958.1 KEGG: aav:Aave_3055 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase YP_004388959.1 TIGRFAM: Sulphate adenylyltransferase, large subunit; KEGG: dia:Dtpsy_1931 sulfate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding YP_004388960.1 PFAM: Ferredoxin, C-terminal; 4Fe-4S binding domain; KEGG: dia:Dtpsy_1932 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004388961.1 KEGG: dia:Dtpsy_1933 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004388962.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: ctt:CtCNB1_2972 cytosine/purines/uracil permease YP_004388963.1 KEGG: dia:Dtpsy_1934 SH3 type 3 domain protein; PFAM: SH3, type 3; Protein of unknown function DUF1058; SMART: SH3-like domain, bacterial YP_004388964.1 TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: ajs:Ajs_1787 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_004388965.1 KEGG: dia:Dtpsy_1936 FAD dependent oxidoreductase; TIGRFAM: Glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase YP_004388966.1 KEGG: dia:Dtpsy_1937 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS YP_004388967.1 KEGG: dia:Dtpsy_1938 thiazole synthase; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis YP_004388968.1 KEGG: dia:Dtpsy_1939 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase YP_004388969.1 KEGG: dia:Dtpsy_1940 hypothetical protein YP_004388970.1 KEGG: dia:Dtpsy_1941 3-hydroxy-acyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004388971.1 PFAM: Crotonase, core; KEGG: dia:Dtpsy_1942 enoyl-CoA hydratase/isomerase YP_004388972.1 KEGG: ajs:Ajs_1779 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004388973.1 PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_1778 aminoglycoside phosphotransferase YP_004388974.1 KEGG: dia:Dtpsy_1945 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004388975.1 KEGG: dac:Daci_5941 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase domain YP_004388976.1 KEGG: dac:Daci_5942 sodium/proline symporter; TIGRFAM: Sodium/solute symporter, subgroup; Sodium/proline symporter; PFAM: Sodium/solute symporter YP_004388977.1 KEGG: dia:Dtpsy_1946 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal YP_004388978.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; KEGG: ajs:Ajs_1775 murein-dd-endopeptidase YP_004388979.1 SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type; KEGG: ajs:Ajs_1774 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004388980.1 SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: Yeast 2-isopropylmalate synthase; KEGG: dia:Dtpsy_1949 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004388981.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_3346 LysR family transcriptional regulator YP_004388982.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3679 glyoxalase-family protein YP_004388983.1 PFAM: Major facilitator superfamily MFS-1; KEGG: hse:Hsero_1116 4-hydroxybenzoate transporter transmembrane protein YP_004388984.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: tmz:Tmz1t_0853 fumarylacetoacetate (FAA) hydrolase YP_004388985.1 TIGRFAM: Maleylacetoacetate isomerase; KEGG: xtr:100496290 probable maleylacetoacetate isomerase-like; PFAM: Glutathione S-transferase, N-terminal YP_004388986.1 KEGG: xtr:100496448 CDP-diacylglycerol--serine O-phosphatidyltransferase-like; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004388987.1 TIGRFAM: Acetohydroxy acid isomeroreductase; KEGG: dia:Dtpsy_1951 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal YP_004388988.1 KEGG: ctt:CtCNB1_1659 acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT YP_004388989.1 TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: ajs:Ajs_1769 acetolactate synthase 3 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain YP_004388990.1 KEGG: dia:Dtpsy_1954 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004388991.1 PFAM: Protein of unknown function DUF3619; KEGG: dia:Dtpsy_1955 putative transmembrane protein YP_004388992.1 PFAM: Protein of unknown function DUF3106; KEGG: ajs:Ajs_1766 putative transmembrane protein YP_004388993.1 PFAM: RDD; KEGG: ajs:Ajs_1765 RDD domain-containing protein YP_004388994.1 PFAM: Diacylglycerol kinase, prokaryotic; KEGG: dia:Dtpsy_1958 diacylglycerol kinase YP_004388995.1 KEGG: dia:Dtpsy_1959 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG YP_004388996.1 KEGG: dia:Dtpsy_1960 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII YP_004388997.1 TIGRFAM: NAD synthase; KEGG: vei:Veis_1737 NAD+ synthetase; PFAM: NAD/GMP synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004388998.1 PFAM: Protein of unknown function DUF482; KEGG: vei:Veis_1736 hypothetical protein YP_004388999.1 KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004389000.1 KEGG: ajs:Ajs_1759 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004389001.1 KEGG: dia:Dtpsy_1964 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase YP_004389002.1 PFAM: Pyrophosphate-energised proton pump; TIGRFAM: Pyrophosphate-energised proton pump; HAMAP: Pyrophosphate-energised proton pump; KEGG: dia:Dtpsy_1965 membrane-bound proton-translocating pyrophosphatase YP_004389003.1 PFAM: Aldehyde dehydrogenase domain; KEGG: dia:Dtpsy_1966 aldehyde dehydrogenase YP_004389004.1 KEGG: ajs:Ajs_1755 hypothetical protein YP_004389005.1 KEGG: dia:Dtpsy_1968 hypothetical protein YP_004389006.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: dia:Dtpsy_1969 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_004389007.1 TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: dia:Dtpsy_1970 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_004389008.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aav:Aave_2657 GCN5-related N-acetyltransferase YP_004389009.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; MoeA, N-terminal and linker domain; MoeA, C-terminal, domain IV; KEGG: dia:Dtpsy_1971 molybdenum cofactor synthesis domain protein; SMART: Molybdopterin binding YP_004389010.1 PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1972 thioredoxin domain protein YP_004389011.1 KEGG: dac:Daci_4475 hypothetical protein YP_004389012.1 KEGG: bbr:BB4338 hypothetical protein YP_004389013.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: rsl:RPSI07_mp1263 dimethylmenaquinone methyltransferase; protein YP_004389014.1 KEGG: aav:Aave_4073 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004389015.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rso:RS03179 transcription regulator protein YP_004389016.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2990 dimethylmenaquinone methyltransferase YP_004389017.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2989 dimethylmenaquinone methyltransferase YP_004389018.1 KEGG: rso:RSp1232 aspartate aminotransferase A protein; PFAM: Aminotransferase, class I/classII YP_004389019.1 KEGG: dia:Dtpsy_1973 ribonuclease H; HAMAP: Ribonuclease H; PFAM: Ribonuclease H domain YP_004389020.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_1744 methyltransferase type 11 YP_004389021.1 SMART: Beta-lactamase-like; TIGRFAM: Hydroxyacylglutathione hydrolase; KEGG: dia:Dtpsy_1975 hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase; PFAM: Beta-lactamase-like YP_004389022.1 PFAM: Lytic transglycosylase-like, catalytic; MLTD-N; Peptidoglycan-binding lysin domain; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic YP_004389023.1 PFAM: Protein of unknown function DUF3096; KEGG: dia:Dtpsy_1977 hypothetical protein YP_004389024.1 KEGG: aav:Aave_2648 putative signal peptide protein YP_004389025.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_3340 phage integrase family protein YP_004389026.1 KEGG: eba:ebA218 hypothetical protein YP_004389027.1 KEGG: vap:Vapar_3801 hypothetical protein YP_004389028.1 KEGG: hsm:HSM_1673 hypothetical protein YP_004389029.1 KEGG: ajs:Ajs_1730 hypothetical protein YP_004389030.1 KEGG: vap:Vapar_3798 hypothetical protein YP_004389031.1 KEGG: vap:Vapar_3797 hypothetical protein YP_004389035.1 KEGG: ctt:CtCNB1_2998 hypothetical protein YP_004389036.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: aav:Aave_3403 UBA/ThiF-type NAD/FAD binding protein YP_004389037.1 TIGRFAM: Tol-Pal system, YbgF; KEGG: ajs:Ajs_1725 TPR repeat-containing protein YP_004389038.1 KEGG: dia:Dtpsy_1980 peptidoglycan-associated lipoprotein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal YP_004389039.1 KEGG: dia:Dtpsy_1981 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller YP_004389040.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, lipid A export, MsbA; KEGG: dia:Dtpsy_1982 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane domain; ABC transporter-like YP_004389041.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin/lipoyl attachment; KEGG: dac:Daci_5726 carbamoyl-phosphate synthase subunit L; SMART: Biotin carboxylase, C-terminal YP_004389042.1 SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: Allophanate hydrolase subunit 2; Conserved hypothetical protein CHP00370; KEGG: reu:Reut_A2450 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1 YP_004389043.1 PFAM: Protein of unknown function DUF1445; KEGG: reh:H16_B1759 hypothetical protein YP_004389044.1 PFAM: Uncharacterised protein family UPF0271, LamB/YcsF; KEGG: aav:Aave_3513 LamB/YcsF family protein YP_004389045.1 PFAM: General substrate transporter; KEGG: reh:H16_B1760 major facilitator superfamily transporter AAHS family protein YP_004389046.1 KEGG: aav:Aave_3515 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004389047.1 KEGG: app:CAP2UW1_0424 hypothetical protein YP_004389049.1 PFAM: Ankyrin repeat; KEGG: dia:Dtpsy_1983 ankyrin YP_004389050.1 KEGG: ajs:Ajs_1720 TatD family hydrolase; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related YP_004389051.1 PFAM: Type IV pilus assembly PilZ; KEGG: dia:Dtpsy_1985 type IV pilus assembly PilZ YP_004389052.1 KEGG: ajs:Ajs_1718 DNA-directed DNA polymerase YP_004389053.1 PFAM: Thymidylate kinase; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: dia:Dtpsy_1987 thymidylate kinase YP_004389054.1 KEGG: ajs:Ajs_1716 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755 YP_004389055.1 KEGG: ajs:Ajs_1715 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel YP_004389056.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: dia:Dtpsy_2009 CMP/dCMP deaminase zinc-binding YP_004389057.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dac:Daci_2202 major facilitator transporter YP_004389058.1 KEGG: dac:Daci_1205 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004389059.1 KEGG: dac:Daci_1204 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal YP_004389060.1 PFAM: Domain of unknown function DUF336; KEGG: dac:Daci_1203 hypothetical protein YP_004389061.1 KEGG: dia:Dtpsy_1990 thioesterase superfamily protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; GCN5-related N-acetyltransferase (GNAT) domain YP_004389062.1 KEGG: ajs:Ajs_1713 alpha/beta hydrolase domain-containing protein YP_004389063.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: ajs:Ajs_1712 hydratase/decarboxylase YP_004389064.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_1708 putative signal transduction protein YP_004389065.1 KEGG: cti:pRALTA_0434 putative transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004389066.1 PFAM: Amidohydrolase 2; KEGG: bam:Bamb_4804 amidohydrolase 2 YP_004389067.1 KEGG: rme:Rmet_4146 extra-cytoplasmic solute receptor YP_004389068.1 KEGG: aav:Aave_3937 hypothetical protein YP_004389069.1 KEGG: reu:Reut_B4958 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004389070.1 PFAM: Citrate synthase-like; KEGG: rme:Rmet_4144 citrate synthase YP_004389071.1 KEGG: bbr:BB0548 LacI family regulatory protein; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004389072.1 KEGG: bbr:BB0564 hypothetical protein YP_004389073.1 KEGG: bbr:BB0547 putative ligase; PFAM: AMP-dependent synthetase/ligase YP_004389074.1 KEGG: rpd:RPD_4223 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004389075.1 KEGG: reu:Reut_A0842 hypothetical protein YP_004389076.1 KEGG: bbr:BB0546 acetyl-CoA acetyltransferase YP_004389077.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: bbr:BB0545 hypothetical protein YP_004389078.1 KEGG: bbr:BB0544 hypothetical protein YP_004389079.1 KEGG: ajs:Ajs_1707 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1 YP_004389080.1 KEGG: dia:Dtpsy_1998 hypothetical protein YP_004389081.1 PFAM: Protein of unknown function DUF72; KEGG: dia:Dtpsy_1999 protein of unknown function DUF72 YP_004389082.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein YP_004389083.1 PFAM: ChaC-like protein; KEGG: dia:Dtpsy_1879 ChaC family protein YP_004389084.1 TIGRFAM: Pyridoxamine 5'-phosphate oxidase; KEGG: dia:Dtpsy_1881 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal YP_004389085.1 PFAM: Auxin efflux carrier; KEGG: dia:Dtpsy_1882 auxin efflux carrier YP_004389086.1 KEGG: ajs:Ajs_2035 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter YP_004389087.1 KEGG: ajs:Ajs_2034 hypothetical protein YP_004389088.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dia:Dtpsy_1842 TonB-dependent receptor YP_004389089.1 TIGRFAM: Peptide methionine sulphoxide reductase MsrA; KEGG: ajs:Ajs_2030 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA YP_004389090.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_2029 TetR family transcriptional regulator YP_004389091.1 KEGG: dia:Dtpsy_1837 protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004389092.1 KEGG: dia:Dtpsy_1836 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004389093.1 KEGG: dia:Dtpsy_1835 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004389094.1 PFAM: Plasmid recombination enzyme; KEGG: bvi:Bcep1808_2267 plasmid recombination enzyme YP_004389095.1 KEGG: mmb:Mmol_0218 hypothetical protein YP_004389096.1 KEGG: axy:AXYL_03456 hypothetical protein; manually curated; PFAM: Drug/metabolite transporter YP_004389097.1 PFAM: Flavodoxin/nitric oxide synthase; KEGG: dia:Dtpsy_2016 NAD(P)H dehydrogenase (quinone) YP_004389098.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: dia:Dtpsy_2017 acyl-CoA dehydrogenase domain protein YP_004389099.1 KEGG: ctt:CtCNB1_1867 amino acid ABC transporter, permease protein PEB1; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004389100.1 KEGG: dac:Daci_4388 polar amino acid ABC transporter inner membrane protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004389101.1 KEGG: ctt:CtCNB1_1865 glutamate-binding protein precursor; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004389102.1 TIGRFAM: Thiolase; KEGG: dia:Dtpsy_2019 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004389103.1 KEGG: ajs:Ajs_1684 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core YP_004389104.1 KEGG: dia:Dtpsy_2021 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004389105.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2022 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389106.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2023 inner-membrane translocator YP_004389107.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2024 inner-membrane translocator YP_004389108.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2025 extracellular ligand-binding receptor YP_004389109.1 KEGG: dia:Dtpsy_2026 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004389110.1 KEGG: ajs:Ajs_1677 hypothetical protein; HAMAP: Uncharacterised protein family UPF0061; PFAM: Uncharacterised protein family UPF0061 YP_004389111.1 TIGRFAM: Methionine sulphoxide reductase B; KEGG: dia:Dtpsy_2028 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B YP_004389112.1 KEGG: ajs:Ajs_1675 intracellular septation protein A; TIGRFAM: Intracellular septation protein A; PFAM: Intracellular septation protein A YP_004389113.1 PFAM: BolA protein; KEGG: dia:Dtpsy_2030 BolA family protein YP_004389114.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_2031 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004389115.1 PFAM: Protein of unknown function DUF1049; KEGG: dia:Dtpsy_1389 hypothetical protein YP_004389116.1 KEGG: ajs:Ajs_2472 tetratricopeptide repeat protein YP_004389117.1 KEGG: ajs:Ajs_2473 hypothetical protein YP_004389118.1 KEGG: dia:Dtpsy_1386 putative monovalent cation/H+ antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; Na+/H+ antiporter MnhB subunit-related protein YP_004389119.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: dia:Dtpsy_1385 putative monovalent cation/H+ antiporter subunit C YP_004389120.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: ajs:Ajs_2476 putative monovalent cation/H+ antiporter subunit D YP_004389121.1 PFAM: cation antiporter; KEGG: dia:Dtpsy_1383 putative monovalent cation/H+ antiporter subunit E YP_004389122.1 PFAM: Multiple resistance and pH regulation protein F; KEGG: dia:Dtpsy_1382 multiple resistance and pH regulation protein F YP_004389123.1 PFAM: Na+/H+ antiporter subunit; KEGG: dia:Dtpsy_1381 Na+/H+ antiporter subunit YP_004389124.1 PFAM: Peptidase M14, carboxypeptidase A; KEGG: dia:Dtpsy_1379 hypothetical protein YP_004389125.1 KEGG: dia:Dtpsy_1374 camphor resistance protein CrcB; TIGRFAM: Camphor resistance CrcB protein; PFAM: Camphor resistance CrcB protein YP_004389126.1 KEGG: ajs:Ajs_2487 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG YP_004389127.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1372 major facilitator superfamily MFS_1 YP_004389128.1 PFAM: DNA recombination RmuC; KEGG: azo:azo2787 putative RumC-like protein YP_004389129.1 KEGG: dia:Dtpsy_1370 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004389130.1 KEGG: ajs:Ajs_2491 putative transmembrane protein YP_004389131.1 KEGG: dia:Dtpsy_1368 nicotinate phosphoribosyltransferase; TIGRFAM: Nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_004389132.1 PFAM: Thioesterase superfamily; KEGG: dia:Dtpsy_1367 thioesterase superfamily protein YP_004389133.1 KEGG: dia:Dtpsy_1366 phasin family protein; TIGRFAM: Phasin, subfamily 1; PFAM: Phasin YP_004389134.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ajs:Ajs_1607 extracellular solute-binding protein YP_004389135.1 KEGG: dia:Dtpsy_2108 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004389136.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1604 phage integrase family protein YP_004389137.1 manually curated; KEGG: ajs:Ajs_1603 hypothetical protein YP_004389138.1 manually curated; KEGG: ajs:Ajs_1602 hypothetical protein YP_004389139.1 KEGG: ajs:Ajs_1601 hypothetical protein YP_004389140.1 TIGRFAM: ParB-related, ThiF-related cassette, protein D; KEGG: ajs:Ajs_1600 hypothetical protein YP_004389142.1 KEGG: ajs:Ajs_1599 hypothetical protein YP_004389143.1 KEGG: ajs:Ajs_1598 nucleoid protein H-NS; PFAM: Histone-like nucleoid-structuring protein H-NS; SMART: Histone-like nucleoid-structuring protein H-NS YP_004389145.1 KEGG: ajs:Ajs_1597 UBA/ThiF-type NAD/FAD binding protein; TIGRFAM: ParB-related, ThiF-related cassette, ThiF; PFAM: UBA/THIF-type NAD/FAD binding fold YP_004389146.1 KEGG: ajs:Ajs_1596 hypothetical protein; TIGRFAM: ParB-related, ThiF-related cassette, protein A; PFAM: Domain of unknown function DUF2016 YP_004389147.1 TIGRFAM: ParB-related, ThiF-related cassette, protein B; KEGG: ajs:Ajs_1595 hypothetical protein YP_004389148.1 TIGRFAM: ParB-related, ThiF-related cassette, protein F; KEGG: ajs:Ajs_1594 hypothetical protein YP_004389149.1 TIGRFAM: ParB-related, ThiF-related cassette, protein C; KEGG: ajs:Ajs_1593 hypothetical protein YP_004389150.1 TIGRFAM: ParB-related, ThiF-related cassette, protein E; KEGG: ajs:Ajs_1592 hypothetical protein YP_004389151.1 TIGRFAM: ParB-related, ThiF-related cassette, ParB; ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_1591 ParB family protein; SMART: ParB-like nuclease YP_004389152.1 KEGG: ajs:Ajs_1590 hypothetical protein YP_004389153.1 KEGG: dia:Dtpsy_2126 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004389154.1 KEGG: dia:Dtpsy_2127 hypothetical protein YP_004389155.1 KEGG: ajs:Ajs_1585 putative EA31 gene protein, phage lambda YP_004389156.1 KEGG: ajs:Ajs_1584 putative EA59 gene protein, phage lambda YP_004389157.1 manually curated; KEGG: dia:Dtpsy_2166 hypothetical protein YP_004389158.1 KEGG: rfr:Rfer_1072 hypothetical protein YP_004389159.1 PFAM: Phage Gp37Gp68; KEGG: dia:Dtpsy_2170 Gp37Gp68 family protein YP_004389160.1 PFAM: Protein of unknown function DUF1814; KEGG: dia:Dtpsy_2171 hypothetical protein YP_004389161.1 KEGG: vei:Veis_2691 hypothetical protein YP_004389162.1 KEGG: dia:Dtpsy_2173 hypothetical protein YP_004389163.1 KEGG: dia:Dtpsy_2174 hypothetical protein YP_004389164.1 KEGG: dia:Dtpsy_2175 hypothetical protein YP_004389165.1 KEGG: dia:Dtpsy_2176 hypothetical protein YP_004389166.1 SMART: DEAD-like helicase, N-terminal; KEGG: ajs:Ajs_1578 helicase domain-containing protein YP_004389167.1 manually curated; KEGG: ajs:Ajs_1576 hypothetical protein YP_004389168.1 KEGG: ajs:Ajs_1575 hypothetical protein YP_004389169.1 KEGG: ajs:Ajs_1574 hypothetical protein YP_004389170.1 KEGG: ajs:Ajs_1573 hypothetical protein YP_004389171.1 KEGG: ajs:Ajs_1572 hypothetical protein YP_004389172.1 KEGG: ajs:Ajs_1571 putative DNA repair ATPase YP_004389173.1 KEGG: ajs:Ajs_1570 hypothetical protein YP_004389174.1 PFAM: Protein of unknown function DUF1814; KEGG: ajs:Ajs_1569 hypothetical protein YP_004389175.1 PFAM: Metallo-dependent phosphatase; KEGG: ajs:Ajs_1567 metallophosphoesterase YP_004389176.1 KEGG: ajs:Ajs_1566 hypothetical protein YP_004389177.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1565 phage integrase family protein YP_004389178.1 PFAM: Protein of unknown function DUF1173; KEGG: ajs:Ajs_1564 hypothetical protein YP_004389179.1 PFAM: Prophage CP4-57 regulatory; KEGG: ajs:Ajs_1562 phage transcriptional regulator, AlpA YP_004389180.1 KEGG: ajs:Ajs_1561 hypothetical protein YP_004389181.1 KEGG: ajs:Ajs_1560 hypothetical protein YP_004389182.1 KEGG: ajs:Ajs_1559 hypothetical protein YP_004389183.1 KEGG: ajs:Ajs_1558 hypothetical protein YP_004389184.1 KEGG: ajs:Ajs_1556 phage P4 alpha zinc-binding domain-containing protein; PFAM: Phage P4 alpha, zinc-binding; SMART: Phage P4 alpha, zinc-binding YP_004389185.1 KEGG: ajs:Ajs_1554 hypothetical protein YP_004389186.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: ajs:Ajs_1553 putative phage repressor YP_004389187.1 KEGG: ajs:Ajs_1552 hypothetical protein YP_004389188.1 KEGG: ajs:Ajs_1551 hypothetical protein YP_004389189.1 PFAM: Uncharacterised protein family, helicase/relaxase, putative; KEGG: ajs:Ajs_1550 FHA domain-containing protein YP_004389190.1 TIGRFAM: Conjugative coupling factor TraG/TraD; KEGG: ajs:Ajs_1549 hypothetical protein YP_004389191.1 KEGG: ajs:Ajs_1548 hypothetical protein YP_004389192.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: ajs:Ajs_1547 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3 YP_004389193.1 manually curated; KEGG: ajs:Ajs_1546 hypothetical protein YP_004389194.1 KEGG: ajs:Ajs_1545 hypothetical protein YP_004389195.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_1544 lytic transglycosylase, catalytic YP_004389196.1 KEGG: ajs:Ajs_1542 hypothetical protein YP_004389197.1 KEGG: ajs:Ajs_1541 TraL family protein; TIGRFAM: Type IV conjugative transfer system, protein TraL; PFAM: Type IV conjugative transfer system, protein TraL YP_004389198.1 TIGRFAM: Pilus assembly TraE; KEGG: ajs:Ajs_1540 plasmid-like conjugative transfer protein TraE YP_004389199.1 KEGG: ajs:Ajs_1539 hypothetical protein YP_004389200.1 KEGG: ajs:Ajs_1538 TraB pilus assembly family protein YP_004389201.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_1537 periplasmic thiol:disulfide interchange protein YP_004389202.1 KEGG: ajs:Ajs_1536 hypothetical protein; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV YP_004389203.1 TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_1535 hypothetical protein YP_004389204.1 KEGG: ajs:Ajs_1534 hypothetical protein YP_004389205.1 KEGG: ajs:Ajs_1533 hypothetical protein; TIGRFAM: Peptidase S26C, conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region YP_004389206.1 KEGG: ajs:Ajs_1532 hypothetical protein YP_004389207.1 TIGRFAM: Type-F conjugative transfer system protein TraW; KEGG: ajs:Ajs_1531 membrane lipoprotein lipid attachment site YP_004389208.1 PFAM: TraU; KEGG: ajs:Ajs_1530 TraU family protein YP_004389209.1 KEGG: ajs:Ajs_1529 hypothetical protein; TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC, subgroup; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC YP_004389210.1 KEGG: ajs:Ajs_1528 conjugal transfer mating pair stabilization protein TraN YP_004389211.1 KEGG: ajs:Ajs_1527 hypothetical protein YP_004389212.1 KEGG: ajs:Ajs_1526 hypothetical protein; TIGRFAM: Type IV conjugative transfer system protein TraF; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant YP_004389213.1 PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_1525 TraH family protein YP_004389214.1 PFAM: TraG-like, N-terminal; KEGG: ajs:Ajs_1524 TraG domain-containing protein YP_004389215.1 KEGG: ajs:Ajs_1521 hypothetical protein YP_004389216.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1565 phage integrase family protein YP_004389217.1 PFAM: Transposase, IS4-like; KEGG: pol:Bpro_4722 IS4 family transposase YP_004389218.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_1490 hypothetical protein YP_004389219.1 KEGG: ajs:Ajs_1514 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related YP_004389220.1 PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; manually curated; KEGG: ajs:Ajs_1513 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter YP_004389221.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1512 major facilitator superfamily transporter YP_004389222.1 PFAM: LemA; KEGG: ajs:Ajs_1511 LemA family protein YP_004389223.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1510 hypothetical protein YP_004389224.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1509 hypothetical protein YP_004389225.1 KEGG: ajs:Ajs_1508 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like YP_004389226.1 KEGG: ajs:Ajs_1507 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase, C-terminal; Glycosyl transferase, family 3; TIGRFAM: Thymidine phosphorylase, type 2; HAMAP: Thymidine phosphorylase, type 2; SMART: Pyrimidine nucleoside phosphorylase, C-terminal YP_004389227.1 KEGG: ajs:Ajs_1506 phosphoribosylpyrophosphate synthetase; TIGRFAM: Phosphoribosyl pyrophosphokinase YP_004389228.1 KEGG: ajs:Ajs_1505 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF YP_004389229.1 KEGG: dba:Dbac_2177 carbamate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_004389230.1 KEGG: ajs:Ajs_1500 hypothetical protein YP_004389231.1 TIGRFAM: Mercury reductase, MerA; KEGG: mms:mma_1749 putative mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004389232.1 KEGG: shn:Shewana3_4343 mercuric transport protein periplasmic component; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein YP_004389233.1 PFAM: Mercuric transport protein MerT; KEGG: net:Neut_2570 putative mercuric transport protein YP_004389234.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: net:Neut_2571 putative transcriptional regulator MerR; SMART: HTH transcriptional regulator, MerR YP_004389235.1 KEGG: ajs:Ajs_1486 hypothetical protein YP_004389236.1 PFAM: Flagellar hook-basal body complex protein FliE; manually curated; TIGRFAM: Flagellar hook-basal body complex protein FliE; KEGG: ajs:Ajs_1485 flagellar hook-basal body complex subunit FliE; HAMAP: Flagellar hook-basal body complex protein FliE YP_004389237.1 KEGG: dia:Dtpsy_2181 hypothetical protein YP_004389238.1 KEGG: dia:Dtpsy_2183 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004389239.1 PFAM: Transposase IS3/IS911family; KEGG: dia:Dtpsy_3180 transposase IS3/IS911 family protein YP_004389240.1 PFAM: Integrase, catalytic core; KEGG: dia:Dtpsy_3179 integrase catalytic region YP_004389241.1 KEGG: dia:Dtpsy_2203 hypothetical protein YP_004389242.1 KEGG: dia:Dtpsy_2204 transcriptional regulator, ArsR family; PFAM: Rhodanese-like; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; Rhodanese-like YP_004389243.1 PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_2205 methyltransferase type 11 YP_004389244.1 PFAM: Sulphur relay, DsrE/F-like protein; KEGG: dia:Dtpsy_2206 DsrE family protein YP_004389245.1 KEGG: dia:Dtpsy_2207 methyltransferase type 11; manually curated; PFAM: Methyltransferase type 11 YP_004389246.1 PFAM: Outer membrane efflux protein; KEGG: dia:Dtpsy_2209 outer membrane efflux protein YP_004389247.1 KEGG: dia:Dtpsy_2210 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004389248.1 KEGG: dia:Dtpsy_2211 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII YP_004389249.1 KEGG: dia:Dtpsy_2212 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004389250.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_2214 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004389251.1 TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: dia:Dtpsy_2215 two component heavy metal response transcriptional regulator, winged helix family; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004389252.1 TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; KEGG: dia:Dtpsy_2216 heavy metal sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004389253.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2217 protein of unknown function DUF6 transmembrane YP_004389254.1 KEGG: dia:Dtpsy_2218 hypothetical protein YP_004389255.1 KEGG: dia:Dtpsy_2221 hypothetical protein YP_004389256.1 KEGG: dia:Dtpsy_2222 ISRSO5-transposase protein YP_004389257.1 TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: dia:Dtpsy_2224 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004389258.1 TIGRFAM: O-succinylhomoserine sulfhydrylase; KEGG: dac:Daci_4768 O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004389259.1 TIGRFAM: Amidophosphoribosyl transferase; KEGG: dia:Dtpsy_2226 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase YP_004389260.1 PFAM: Colicin V production, CvpA; Protein of unknown function DUF2474; KEGG: dia:Dtpsy_2227 colicin V production protein YP_004389261.1 PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_2228 sporulation domain protein YP_004389262.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: ajs:Ajs_2739 FolC bifunctional protein; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_004389263.1 KEGG: dia:Dtpsy_2230 arsenate reductase and related; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like YP_004389264.1 KEGG: dia:Dtpsy_2231 17 kDa surface antigen YP_004389265.1 PFAM: Protein of unknown function DUF1255; KEGG: dia:Dtpsy_2232 protein of unknown function DUF1255 YP_004389266.1 PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: dia:Dtpsy_2233 argininosuccinate synthase YP_004389267.1 KEGG: tmz:Tmz1t_3466 GAF modulated sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004389268.1 PFAM: Acetone carboxylase, gamma subunit-related; KEGG: eba:ebA4702 acetone carboxylase gamma subunit YP_004389269.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: tmz:Tmz1t_3470 hydantoinase B/oxoprolinase YP_004389270.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: reu:Reut_C6172 acetone carboxylase, beta subunit YP_004389271.1 KEGG: dia:Dtpsy_2234 ExsB protein; TIGRFAM: Queuosine synthesis; PFAM: Queuosine synthesis YP_004389272.1 KEGG: dia:Dtpsy_2235 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165 YP_004389273.1 PFAM: SPW repeat; KEGG: dac:Daci_4779 SPW repeat-containing protein YP_004389274.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dia:Dtpsy_2239 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal YP_004389275.1 PFAM: Protein of unknown function DUF520; KEGG: ajs:Ajs_2750 putative nucleotide-binding protein YP_004389276.1 PFAM: Peptidase A2A, retrovirus RVP subgroup; KEGG: ajs:Ajs_2751 hypothetical protein YP_004389277.1 KEGG: dia:Dtpsy_2242 putative metal dependent phosphohydrolase YP_004389278.1 TIGRFAM: Glycerol-3-phosphate acyltransferase, bacteria; HAMAP: Glycerol-3-phosphate acyltransferase, bacteria; KEGG: dia:Dtpsy_2243 protein of unknown function DUF205; PFAM: Glycerol-3-phosphate acyltransferase, bacteria YP_004389279.1 KEGG: ajs:Ajs_2754 YbaK/EbsC protein; TIGRFAM: Prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain YP_004389280.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ajs:Ajs_2755 aldo/keto reductase YP_004389281.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: dac:Daci_4799 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004389282.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_4800 binding-protein-dependent transport systems inner membrane component YP_004389283.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dac:Daci_4801 extracellular solute-binding protein YP_004389284.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_2246 alpha/beta hydrolase fold protein YP_004389285.1 TIGRFAM: Diaminopimelate dehydrogenase; KEGG: ajs:Ajs_2757 diaminopimelate dehydrogenase; PFAM: Dihydrodipicolinate reductase, N-terminal YP_004389286.1 manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_004389287.1 KEGG: dia:Dtpsy_2249 aminopeptidase N; TIGRFAM: Peptidase M1, alanyl aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal YP_004389288.1 KEGG: xtr:100486364 fructose-1,6-bisphosphatase class 1-like; PFAM: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase YP_004389289.1 KEGG: sew:SeSA_B0128 antirestriction protein; manually curated; PFAM: Domain of unknown function DUF1738 YP_004389291.1 KEGG: gca:Galf_1463 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004389294.1 PFAM: Terminase small subunit; KEGG: mch:Mchl_1604 terminase small subunit YP_004389295.1 SMART: Primase, C-terminal 1; KEGG: aeh:Mlg_0791 ATPase-like protein YP_004389296.1 KEGG: ava:Ava_3094 virulence-associated E YP_004389298.1 KEGG: glo:Glov_1426 hypothetical protein YP_004389300.1 PFAM: Integrase, catalytic core, phage; KEGG: glo:Glov_1428 integrase family protein YP_004389301.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: dia:Dtpsy_1238 tRNA/rRNA methyltransferase (SpoU) YP_004389302.1 KEGG: dia:Dtpsy_1237 ribonuclease HII; PFAM: Ribonuclease HII/HIII YP_004389303.1 KEGG: dia:Dtpsy_1236 lipid-A-disaccharide synthase; manually curated; TIGRFAM: Glycosyl transferase, family 19; PFAM: Glycosyl transferase, family 19; HAMAP: Glycosyl transferase, family 19 YP_004389304.1 PFAM: Bacterial transferase hexapeptide repeat; TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: ajs:Ajs_2573 UDP-N-acetylglucosamine acyltransferase YP_004389305.1 KEGG: aav:Aave_1834 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_004389306.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: dia:Dtpsy_1233 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat YP_004389307.1 KEGG: ajs:Ajs_2576 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH) YP_004389308.1 KEGG: dia:Dtpsy_1231 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_004389309.1 TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: ajs:Ajs_2578 peptidase RseP; SMART: PDZ/DHR/GLGF YP_004389310.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: dia:Dtpsy_1229 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal YP_004389311.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: dia:Dtpsy_1228 phosphatidate cytidylyltransferase YP_004389312.1 TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: dia:Dtpsy_1227 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase-like YP_004389313.1 KEGG: dia:Dtpsy_1226 ribosome recycling factor; TIGRFAM: Ribosome recycling factor; PFAM: Ribosome recycling factor YP_004389314.1 KEGG: dia:Dtpsy_1225 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase YP_004389315.1 KEGG: dia:Dtpsy_1224 elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_004389316.1 KEGG: ajs:Ajs_2585 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2 YP_004389317.1 PFAM: Amidase; KEGG: ajs:Ajs_2586 amidase YP_004389318.1 KEGG: ajs:Ajs_2587 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004389319.1 KEGG: vap:Vapar_0122 hypothetical protein YP_004389320.1 KEGG: dia:Dtpsy_1218 hypothetical protein YP_004389321.1 KEGG: dia:Dtpsy_1217 mammalian cell entry related domain protein YP_004389322.1 PFAM: Domain of unknown function DUF140; KEGG: dia:Dtpsy_1216 protein of unknown function DUF140 YP_004389323.1 KEGG: dia:Dtpsy_1215 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004389324.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2594 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004389325.1 KEGG: dia:Dtpsy_1212 protein of unknown function DUF161; manually curated; PFAM: Protein of unknown function DUF161 YP_004389326.1 KEGG: dia:Dtpsy_1211 hypothetical protein YP_004389327.1 PFAM: Blue (type 1) copper domain; KEGG: ajs:Ajs_2601 blue (type1) copper domain-containing protein YP_004389328.1 PFAM: Protein of unknown function DUF411; KEGG: dia:Dtpsy_1206 protein of unknown function DUF411 YP_004389329.1 PFAM: Peptidase S58, DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA YP_004389330.1 KEGG: ajs:Ajs_2606 TRAP transporter solute receptor TAXI family protein YP_004389331.1 TIGRFAM: ABC transporter ATP-binding protein, ChvD; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1200 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004389332.1 KEGG: ajs:Ajs_2609 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004389333.1 KEGG: ajs:Ajs_2610 peptidase M14, carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A YP_004389334.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_004389335.1 KEGG: ajs:Ajs_2619 hypothetical protein YP_004389337.1 KEGG: dia:Dtpsy_2403 hypothetical protein YP_004389338.1 PFAM: LrgB-like protein; KEGG: dia:Dtpsy_2405 LrgB family protein YP_004389339.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_2978 LysR family transcriptional regulator YP_004389340.1 KEGG: dia:Dtpsy_2407 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004389341.1 KEGG: dia:Dtpsy_2408 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004389342.1 KEGG: ajs:Ajs_2981 hypothetical protein YP_004389343.1 KEGG: dia:Dtpsy_2411 hypothetical protein YP_004389344.1 KEGG: dia:Dtpsy_2412 hypothetical protein YP_004389345.1 PFAM: Regulator of K+ conductance, N-terminal; KEGG: ajs:Ajs_2986 NAD-dependent epimerase/dehydratase YP_004389346.1 KEGG: dia:Dtpsy_2414 CDP-6-deoxy-delta-3,4-glucoseen reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin YP_004389347.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; KEGG: hch:HCH_06702 cysteine synthase YP_004389348.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_B5443 regulatory protein, LysR:LysR, substrate-binding YP_004389349.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase YP_004389350.1 KEGG: reu:Reut_B5440 hypothetical protein YP_004389351.1 KEGG: ajs:Ajs_2989 hypothetical protein YP_004389352.1 PFAM: Uncharacterised protein family UPF0249/HpnK; KEGG: vap:Vapar_5574 YdjC family protein YP_004389353.1 PFAM: GtrA-like protein; KEGG: axy:AXYL_00714 GtrA-like protein YP_004389354.1 PFAM: Glycosyl transferase, family 39; KEGG: dac:Daci_2190 glycosyl transferase family protein YP_004389355.1 PFAM: Glycosyl transferase, family 2; KEGG: vap:Vapar_5572 glycosyl transferase family 2 YP_004389356.1 TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: ajs:Ajs_2990 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004389357.1 TIGRFAM: Poly(A) polymerase, PcnB; KEGG: dia:Dtpsy_2418 poly(A) polymerase; PFAM: Poly A polymerase, head domain YP_004389358.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: dia:Dtpsy_2419 HAD-superfamily subfamily IB hydrolase, TIGR01490 YP_004389359.1 KEGG: aav:Aave_1971 chromosomal replication initiator, DnaA; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda) YP_004389360.1 TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: aci:ACIAD0929 gamma-glutamyltranspeptidase precursor; PFAM: Gamma-glutamyltranspeptidase YP_004389361.1 TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: ajs:Ajs_2994 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein YP_004389362.1 PFAM: Uncharacterised protein family UPF0118; KEGG: dia:Dtpsy_2422 hypothetical protein YP_004389363.1 PFAM: UspA; KEGG: dia:Dtpsy_2423 UspA domain protein YP_004389364.1 KEGG: ajs:Ajs_2998 hypothetical protein YP_004389365.1 KEGG: ajs:Ajs_2999 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN YP_004389366.1 KEGG: dia:Dtpsy_2427 30S ribosomal protein S20; TIGRFAM: Ribosomal protein S20; PFAM: Ribosomal protein S20 YP_004389367.1 KEGG: vha:VIBHAR_05618 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF45 YP_004389369.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66 YP_004389370.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_004389371.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911 YP_004389372.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004389373.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004389374.1 manually curated; KEGG: pol:Bpro_4383 putative porin precursor transmembrane protein YP_004389375.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004389376.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10 YP_004389380.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: vap:Vapar_5710 hypothetical protein YP_004389381.1 PFAM: Protein of unknown function DUF3579; KEGG: dia:Dtpsy_2428 hypothetical protein YP_004389382.1 TIGRFAM: Acetylornithine/succinylornithine aminotransferase; KEGG: dia:Dtpsy_2429 acetylornithine aminotransferase; PFAM: Aminotransferase class-III YP_004389383.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: dia:Dtpsy_2430 ornithine carbamoyltransferase YP_004389384.1 KEGG: bmj:BMULJ_04805 hypothetical protein YP_004389385.1 PFAM: Protein of unknown function DUF2945; KEGG: pde:Pden_4005 hypothetical protein YP_004389386.1 PFAM: Uncharacterised protein family UPF0153; KEGG: ajs:Ajs_3004 hypothetical protein YP_004389387.1 KEGG: dac:Daci_2177 hypothetical protein YP_004389388.1 KEGG: dia:Dtpsy_2434 ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal YP_004389389.1 KEGG: dia:Dtpsy_2435 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit YP_004389390.1 PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_2436 protein of unknown function UPF0153 YP_004389391.1 TIGRFAM: Arylformamidase; KEGG: dia:Dtpsy_2438 arylformamidase; PFAM: Putative cyclase YP_004389392.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: axy:AXYL_03752 LysR family regulatory helix-turn-helix protein 123 YP_004389393.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1563 ABC transporter, permease protein YP_004389394.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: axy:AXYL_03755 binding-protein-dependent transport system inner membrane component family protein 46 YP_004389395.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: rpf:Rpic12D_1762 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004389396.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: axy:AXYL_03757 oligopeptide/dipeptide abc transporter, ATP-binding protein, C-terminal domain-containing protein 6; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004389397.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: bav:BAV1559 ABC transporter, substrate binding protein YP_004389398.1 KEGG: axy:AXYL_03759 BAAT/acyl-CoA thioester hydrolase family protein 1; PFAM: BAAT/Acyl-CoA thioester hydrolase C-terminal; Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase YP_004389399.1 PFAM: Adenosine/AMP deaminase; TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: dia:Dtpsy_2442 adenosine deaminase YP_004389400.1 PFAM: Domain of unknown function DUF861, cupin-3; KEGG: axy:AXYL_05003 hypothetical protein YP_004389401.1 KEGG: rso:RSc3411 transcription regulator protein; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal YP_004389402.1 KEGG: rsl:RPSI07_0031 putative amino acid-binding periplasmic (Pbp) ABC transporter protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004389403.1 KEGG: rso:RSc3409 amino-acid transmembrane ABC transporter protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004389404.1 PFAM: ABC transporter-like; KEGG: rso:RSc3408 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004389405.1 PFAM: FAD dependent oxidoreductase; KEGG: xtr:100491525 hypothetical protein LOC100491525 YP_004389406.1 PFAM: Basic membrane lipoprotein; KEGG: dia:Dtpsy_2443 basic membrane lipoprotein YP_004389407.1 PFAM: Basic membrane lipoprotein; KEGG: dia:Dtpsy_2444 basic membrane lipoprotein YP_004389408.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2445 inner-membrane translocator YP_004389409.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2446 inner-membrane translocator YP_004389410.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2447 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389411.1 KEGG: pol:Bpro_2745 putative transposase YP_004389412.1 KEGG: pol:Bpro_2744 hypothetical protein YP_004389413.1 KEGG: dia:Dtpsy_2451 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp YP_004389414.1 PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type YP_004389415.1 PFAM: Histidine triad (HIT) protein; KEGG: dia:Dtpsy_2454 histidine triad (HIT) protein YP_004389416.1 KEGG: dia:Dtpsy_2455 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004389417.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_3110 Bcr/CflA subfamily drug resistance transporter YP_004389418.1 PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dia:Dtpsy_2457 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase YP_004389419.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2458 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389420.1 PFAM: Heat shock protein Hsp20; KEGG: dia:Dtpsy_2459 heat shock protein HSP20 YP_004389421.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2460 protein of unknown function DUF214 YP_004389422.1 KEGG: ajs:Ajs_3115 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004389423.1 KEGG: ajs:Ajs_3116 secreted hydrolase-like protein YP_004389424.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2463 inner-membrane translocator YP_004389425.1 KEGG: dia:Dtpsy_2464 inner-membrane translocator; manually curated; PFAM: ABC transporter permease YP_004389426.1 PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3119 extracellular ligand-binding receptor YP_004389427.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2466 extracellular ligand-binding receptor YP_004389428.1 KEGG: ajs:Ajs_3121 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004389429.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2468 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389430.1 PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_2469 putative transcriptional regulator, ModE family YP_004389431.1 KEGG: dia:Dtpsy_2470 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004389432.1 KEGG: ajs:Ajs_3125 molybdate ABC transporter, inner membrane subunit; TIGRFAM: Molybdate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004389433.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Molybdate ABC transporter, ATP-binding protein; KEGG: ajs:Ajs_3126 molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 1 YP_004389434.1 KEGG: pna:Pnap_0462 hypothetical protein YP_004389435.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ajs:Ajs_3127 extracellular solute-binding protein YP_004389436.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_3128 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389437.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3129 binding-protein-dependent transport systems inner membrane component YP_004389438.1 PFAM: HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_3130 molybdate metabolism transcriptional regulator YP_004389439.1 KEGG: maq:Maqu_3283 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004389440.1 KEGG: dia:Dtpsy_2483 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004389441.1 TIGRFAM: DNA primase, DnaG; KEGG: ajs:Ajs_3137 DNA primase YP_004389442.1 KEGG: dia:Dtpsy_2485 RNA polymerase, sigma 70 subunit, RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, non-essential domain; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 YP_004389443.1 KEGG: neu:NE0447 hypothetical protein; manually curated; PFAM: Methyladenine glycosylase YP_004389444.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: ajs:Ajs_3139 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal YP_004389445.1 KEGG: dia:Dtpsy_2488 hypothetical protein YP_004389446.1 KEGG: ajs:Ajs_3142 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004389447.1 KEGG: dia:Dtpsy_2490 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase YP_004389448.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_3144 LysR family transcriptional regulator YP_004389449.1 KEGG: dia:Dtpsy_2492 putative transcriptional regulator YP_004389450.1 KEGG: dia:Dtpsy_2493 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004389451.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: dia:Dtpsy_2494 ribosomal protein S12 methylthiotransferase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM YP_004389452.1 KEGG: dia:Dtpsy_2495 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: Polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding, N-terminal; PHB accumulation regulatory YP_004389453.1 KEGG: dia:Dtpsy_2389 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain YP_004389454.1 KEGG: dia:Dtpsy_2387 hypothetical protein YP_004389455.1 SMART: RelA/SpoT; TIGRFAM: RelA/SpoT protein; KEGG: ajs:Ajs_3149 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; TGS; Amino acid-binding ACT YP_004389456.1 KEGG: ajs:Ajs_3150 alpha/beta hydrolase fold; manually curated; PFAM: Alpha/beta hydrolase fold-1 YP_004389457.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; KEGG: dia:Dtpsy_2498 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004389458.1 PFAM: Protein of unknown function DUF541; KEGG: dia:Dtpsy_2499 protein of unknown function DUF541 YP_004389459.1 KEGG: dia:Dtpsy_2500 osmolarity response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004389460.1 KEGG: dia:Dtpsy_2501 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004389461.1 KEGG: dia:Dtpsy_2502 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core YP_004389462.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: dia:Dtpsy_2503 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004389463.1 TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Transcription-repair-coupling factor domain; KEGG: ajs:Ajs_3157 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004389464.1 KEGG: dia:Dtpsy_2505 hypothetical protein YP_004389465.1 KEGG: ppw:PputW619_2172 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; Mannitol dehydrogenase, C-terminal YP_004389466.1 TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: dia:Dtpsy_2506 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase-like hydrolase YP_004389467.1 KEGG: ajs:Ajs_3314 LytR/AlgR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004389468.1 PFAM: Zinc/iron permease; KEGG: dia:Dtpsy_2667 zinc/iron permease YP_004389469.1 KEGG: dia:Dtpsy_2668 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase YP_004389470.1 PFAM: Crotonase, core; KEGG: bpt:Bpet4160 putative enoyl-CoA hydratase YP_004389471.1 KEGG: bpt:Bpet4161 acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III YP_004389472.1 KEGG: bpt:Bpet4162 putative secreted protein YP_004389473.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_A3085 LysR family transcriptional regulator YP_004389474.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: axy:AXYL_04995 alkylhydroperoxidase AhpD family core domain-containing protein 7 YP_004389475.1 KEGG: dac:Daci_0250 hypothetical protein YP_004389476.1 KEGG: axy:AXYL_00411 short chain dehydrogenase family protein 3; PFAM: Short-chain dehydrogenase/reductase SDR YP_004389477.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: axy:AXYL_00410 LysR family regulatory helix-turn-helix protein 12 YP_004389478.1 SMART: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; TIGRFAM: DNA polymerase 1; KEGG: dia:Dtpsy_2669 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease YP_004389479.1 KEGG: ajs:Ajs_3318 hypothetical protein YP_004389480.1 PFAM: Protein of unknown function DUF2782; KEGG: dia:Dtpsy_2671 hypothetical protein YP_004389481.1 TIGRFAM: Homoserine kinase ThrB; KEGG: ajs:Ajs_3320 homoserine kinase; PFAM: Aminoglycoside phosphotransferase YP_004389482.1 KEGG: ajs:Ajs_3321 hypothetical protein YP_004389483.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Extracellular solute-binding protein, family 3; KEGG: dba:Dbac_1471 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Extracellular solute-binding protein, family 3 YP_004389484.1 PFAM: Protein of unknown function DUF839; KEGG: aav:Aave_1926 putative exported alkaline phosphatase YP_004389485.1 PFAM: DNA helicase, UvrD/REP type; KEGG: dia:Dtpsy_2677 UvrD/REP helicase YP_004389486.1 TIGRFAM: Guanosine monophosphate reductase 2; KEGG: aav:Aave_1911 guanosine 5'-monophosphate oxidoreductase; PFAM: IMP dehydrogenase/GMP reductase YP_004389487.1 PFAM: Protein of unknown function DUF2149; KEGG: dia:Dtpsy_2683 hypothetical protein YP_004389488.1 KEGG: gpb:HDN1F_26000 hypothetical protein YP_004389489.1 KEGG: lma:LmjF27.0240 kinetoplast-associated protein-like protein YP_004389490.1 KEGG: dia:Dtpsy_2685 cobaltochelatase; PFAM: CobN/magnesium chelatase YP_004389491.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dia:Dtpsy_2686 TonB-dependent receptor plug YP_004389492.1 PFAM: NnrS; KEGG: dia:Dtpsy_2680 NnrS family protein YP_004389493.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2681 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389494.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_2682 binding-protein-dependent transport systems inner membrane component YP_004389495.1 KEGG: dia:Dtpsy_2687 putative periplasmic component of ABC-type transport system YP_004389496.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dia:Dtpsy_2688 TonB-dependent receptor YP_004389497.1 KEGG: dia:Dtpsy_2689 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004389498.1 KEGG: ajs:Ajs_3342 hypothetical protein YP_004389499.1 PFAM: DR1885-like metal-binding protein; KEGG: dia:Dtpsy_2691 protein of unknown function DUF461 YP_004389500.1 KEGG: ajs:Ajs_3344 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004389501.1 KEGG: vap:Vapar_0607 hypothetical protein YP_004389502.1 PFAM: YCII-related; KEGG: cti:RALTA_B1424 YciI-like protein YP_004389503.1 KEGG: reh:PHG396 putative NagM-like protein YP_004389504.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: rpf:Rpic12D_2066 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase YP_004389505.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: lch:Lcho_0832 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase YP_004389506.1 TIGRFAM: Muconolactone delta-isomerase; KEGG: mno:Mnod_2374 muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase YP_004389507.1 KEGG: reu:Reut_A1508 beta-lactamase-like; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like YP_004389508.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_A1507 regulatory protein, LysR:LysR, substrate-binding YP_004389509.1 KEGG: vap:Vapar_0607 hypothetical protein YP_004389510.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: aav:Aave_1895 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004389511.1 KEGG: dia:Dtpsy_2693 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004389512.1 PFAM: Extracellular ligand-binding receptor; KEGG: vap:Vapar_5221 extracellular ligand-binding receptor YP_004389513.1 KEGG: dia:Dtpsy_2694 oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease YP_004389514.1 KEGG: dia:Dtpsy_2695 STE24 endopeptidase; PFAM: Peptidase M48 YP_004389515.1 manually curated; HAMAP: Transcriptional coactivator/pterin dehydratase; KEGG: dia:Dtpsy_2696 transcriptional coactivator/pterin dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase YP_004389516.1 KEGG: dia:Dtpsy_2697 ribosome small subunit-dependent GTPase A; TIGRFAM: Ribosome biogenesis GTPase RsgA, putative; PFAM: Ribosome biogenesis GTPase RsgA, putative YP_004389517.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: axy:AXYL_00922 permease family protein 1 YP_004389518.1 TIGRFAM: Histidinol-phosphate aminotransferase; KEGG: vap:Vapar_1479 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/classII YP_004389519.1 PFAM: Cobalamin biosynthesis CobD/CbiB; KEGG: dia:Dtpsy_2698 cobalamin biosynthesis protein CbiB YP_004389520.1 PFAM: NUDIX hydrolase domain; KEGG: ajs:Ajs_3351 NUDIX hydrolase YP_004389521.1 KEGG: dac:Daci_5342 ribosomal protein L19; TIGRFAM: Ribosomal protein L19; PFAM: Ribosomal protein L19 YP_004389522.1 PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: ajs:Ajs_3353 tRNA (guanine-N(1)-)-methyltransferase YP_004389523.1 KEGG: dia:Dtpsy_2702 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel YP_004389524.1 KEGG: dia:Dtpsy_2703 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16 YP_004389525.1 KEGG: dia:Dtpsy_2704 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004389526.1 KEGG: dia:Dtpsy_2705 hypothetical protein YP_004389527.1 PFAM: Phosphate transporter; KEGG: dia:Dtpsy_2706 phosphate transporter YP_004389528.1 PFAM: Putitive phosphate transport regulator; KEGG: dia:Dtpsy_2707 protein of unknown function DUF47 YP_004389529.1 KEGG: aav:Aave_1879 OmpA domain-containing protein YP_004389530.1 PFAM: Protein of unknown function DUF486; KEGG: dia:Dtpsy_2708 protein of unknown function DUF486 YP_004389531.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_3361 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389532.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2710 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389533.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2711 inner-membrane translocator YP_004389534.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2712 inner-membrane translocator YP_004389535.1 KEGG: xtr:100494158 replication-associated recombination protein A-like; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004389536.1 KEGG: dia:Dtpsy_2714 integron integrase; TIGRFAM: Integrase, integron-type; PFAM: Integrase, catalytic core, phage YP_004389537.1 KEGG: syc:syc1951_c hypothetical protein; manually curated; PFAM: Cupin 2, conserved barrel YP_004389538.1 KEGG: pen:PSEEN2126 hypothetical protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF YP_004389539.1 KEGG: hch:HCH_04433 restriction endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease YP_004389540.1 KEGG: dia:Dtpsy_2715 protein of unknown function DUF1010; manually curated; PFAM: Protein of unknown function DUF1010 YP_004389541.1 KEGG: has:Halsa_0231 hypothetical protein YP_004389542.1 manually curated; KEGG: vex:VEA_003218 hypothetical protein YP_004389543.1 PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region YP_004389544.1 PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein YP_004389545.1 KEGG: bcm:Bcenmc03_4077 hypothetical protein YP_004389546.1 PFAM: Protein of unknown function DUF2091, periplasmic; KEGG: ctt:CtCNB1_3965 hypothetical protein YP_004389548.1 KEGG: dia:Dtpsy_2718 uracil-DNA glycosylase superfamily YP_004389549.1 PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_004389550.1 TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: ajs:Ajs_3381 outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA YP_004389551.1 KEGG: ajs:Ajs_3382 DNA translocase FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma YP_004389552.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; manually curated; KEGG: dia:Dtpsy_2721 thioredoxin reductase; TIGRFAM: Thioredoxin reductase YP_004389553.1 TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: ctt:CtCNB1_0883 ribosomal protein L28; PFAM: Ribosomal protein L28 YP_004389554.1 KEGG: dia:Dtpsy_2723 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; PFAM: Ribosomal protein L33 YP_004389555.1 PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: aav:Aave_3433 Fmu (Sun) domain-containing protein YP_004389556.1 TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: dac:Daci_5372 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal YP_004389557.1 KEGG: ctt:CtCNB1_0874 hypothetical protein; HAMAP: Protein of unknown function DUF480; PFAM: Protein of unknown function DUF480 YP_004389558.1 PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: dia:Dtpsy_2731 acyl-CoA dehydrogenase domain protein YP_004389559.1 PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: dia:Dtpsy_2732 acyl-CoA dehydrogenase domain protein YP_004389560.1 KEGG: dia:Dtpsy_2733 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease YP_004389561.1 SMART: Riboflavin kinase; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: ajs:Ajs_3398 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase YP_004389562.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase, class Ia; KEGG: dia:Dtpsy_2735 isoleucyl-tRNA synthetase YP_004389563.1 TIGRFAM: Peptidase A8, signal peptidase II; KEGG: dia:Dtpsy_2736 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II YP_004389564.1 KEGG: vap:Vapar_1266 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004389565.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: vap:Vapar_1265 extracellular solute-binding protein family 1 YP_004389566.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1264 binding-protein-dependent transport systems inner membrane component YP_004389567.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1263 binding-protein-dependent transport systems inner membrane component YP_004389568.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: vap:Vapar_1262 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389569.1 PFAM: Metallo-dependent phosphatase; KEGG: vap:Vapar_1261 metallophosphoesterase YP_004389570.1 KEGG: aav:Aave_3461 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi co-transporter II-related; PFAM: Na/Pi-cotransporter; PhoU YP_004389571.1 PFAM: Bile acid:sodium symporter; KEGG: dia:Dtpsy_2738 hypothetical protein YP_004389572.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_3178 LysR family transcriptional regulator YP_004389573.1 PFAM: NUDIX hydrolase domain; KEGG: ajs:Ajs_3404 NUDIX hydrolase YP_004389574.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dia:Dtpsy_2740 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase YP_004389575.1 KEGG: ajs:Ajs_3406 hypothetical protein; manually curated; PFAM: Drug/metabolite transporter YP_004389576.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_2742 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004389577.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ajs:Ajs_3408 TRAP dicarboxylate transporter-DctP subunit YP_004389578.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2744 short-chain dehydrogenase/reductase SDR YP_004389579.1 PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein YP_004389580.1 KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468 YP_004389581.1 KEGG: dia:Dtpsy_2747 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core YP_004389582.1 KEGG: dia:Dtpsy_2748 hypothetical protein YP_004389583.1 KEGG: dia:Dtpsy_2749 hypothetical protein YP_004389584.1 PFAM: Deoxyribonuclease, TatD-related; KEGG: ajs:Ajs_3416 TatD-related deoxyribonuclease YP_004389585.1 PFAM: Protein of unknown function DUF2892; KEGG: dia:Dtpsy_2751 hypothetical protein YP_004389586.1 KEGG: dia:Dtpsy_2752 transcriptional regulator, TrmB; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004389587.1 KEGG: dia:Dtpsy_2753 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004389588.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: aav:Aave_1064 peptidase S1 and S6, chymotrypsin/Hap YP_004389589.1 PFAM: ATPase, AAA-3; KEGG: aav:Aave_1063 ATPase YP_004389590.1 PFAM: Domain of unknown function DUF58; KEGG: aav:Aave_1062 hypothetical protein YP_004389591.1 KEGG: aav:Aave_1061 von Willebrand factor, type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_004389592.1 TIGRFAM: Acetate-CoA ligase; KEGG: aav:Aave_1499 acetyl-coenzyme A synthetase; PFAM: AMP-dependent synthetase/ligase YP_004389593.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: ajs:Ajs_1065 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core YP_004389594.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0980 binding-protein-dependent transport systems inner membrane component YP_004389595.1 PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: dia:Dtpsy_0979 glycine betaine transporter periplasmic subunit YP_004389596.1 KEGG: dia:Dtpsy_0976 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain YP_004389597.1 TIGRFAM: Fumarate hydratase, class II; KEGG: aav:Aave_1491 fumarate hydratase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal YP_004389598.1 KEGG: dac:Daci_2654 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; PFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain YP_004389599.1 KEGG: mno:Mnod_4051 hypothetical protein YP_004389600.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: dia:Dtpsy_0971 peptidase U62 modulator of DNA gyrase YP_004389601.1 PFAM: Ribosome-associated, YjgA; KEGG: dia:Dtpsy_0970 protein of unknown function DUF615 YP_004389602.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; KEGG: ajs:Ajs_1051 molybdopterin adenylyltransferase; SMART: Molybdopterin binding YP_004389603.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dia:Dtpsy_0967 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase YP_004389604.1 PFAM: Nitroreductase-like; KEGG: dia:Dtpsy_0966 nitroreductase YP_004389605.1 KEGG: xtr:100496826 serine acetyltransferase-like; TIGRFAM: Serine O-acetyltransferase YP_004389606.1 KEGG: ajs:Ajs_1046 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004389607.1 KEGG: dia:Dtpsy_0963 inositol-phosphate phosphatase; PFAM: Inositol monophosphatase YP_004389608.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ctt:CtCNB1_3517 tripartite ATP-independent periplasmic protein YP_004389609.1 KEGG: dia:Dtpsy_0958 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004389610.1 KEGG: gdi:GDI_2676 putative ATP-dependent helicase Lhr; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004389611.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ctt:CtCNB1_3520 twin-arginine translocation pathway signal YP_004389612.1 SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Deoxyxylulose-5-phosphate synthase; KEGG: dia:Dtpsy_0956 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; Dehydrogenase, E1 component YP_004389613.1 PFAM: Polyprenyl synthetase; KEGG: dia:Dtpsy_0955 polyprenyl synthetase YP_004389614.1 KEGG: ajs:Ajs_1036 exodeoxyribonuclease VII, small subunit; TIGRFAM: Exonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit YP_004389615.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain-containing protein YP_004389616.1 KEGG: dia:Dtpsy_0952 putative transmembrane protein YP_004389617.1 PFAM: Rhodanese-like; KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase; SMART: Rhodanese-like YP_004389618.1 PFAM: Aldehyde dehydrogenase domain; KEGG: dia:Dtpsy_0944 aldehyde dehydrogenase YP_004389619.1 TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: dia:Dtpsy_0933 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like YP_004389620.1 PFAM: Endoribonuclease L-PSP; KEGG: ajs:Ajs_1018 endoribonuclease L-PSP YP_004389621.1 SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; KEGG: ajs:Ajs_1016 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004389622.1 PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: dia:Dtpsy_0928 DNA topoisomerase IV subunit B; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain YP_004389623.1 KEGG: dia:Dtpsy_0927 major facilitator superfamily MFS_1; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004389624.1 KEGG: ajs:Ajs_1012 hypothetical protein YP_004389625.1 PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_0925 methyltransferase type 12 YP_004389626.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: dia:Dtpsy_0924 dihydrodipicolinate synthase YP_004389627.1 PFAM: Lipoprotein, NlpB; KEGG: ajs:Ajs_1009 NlpB/DapX family lipoprotein YP_004389628.1 KEGG: dia:Dtpsy_0921 hypothetical protein YP_004389629.1 KEGG: dia:Dtpsy_0920 cupin 4 family protein; PFAM: Cupin, JmjC-type; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase YP_004389630.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dia:Dtpsy_0919 fkbp-type peptidyl-prolyl cis-trans isomerase YP_004389631.1 TIGRFAM: DeoxyUTP pyrophosphatase; KEGG: xtr:100496823 deoxyuridine 5'-triphosphate nucleotidohydrolase-like; PFAM: DeoxyUTP pyrophosphatase domain YP_004389633.1 TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: dia:Dtpsy_0916 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein YP_004389634.1 PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: dia:Dtpsy_0915 CTP synthetase YP_004389635.1 TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; KEGG: dac:Daci_5106 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004389636.1 PFAM: Protein of unknown function DUF1330; KEGG: dac:Daci_5107 hypothetical protein YP_004389637.1 TIGRFAM: Enolase; KEGG: xtr:100496359 enolase-like; PFAM: Enolase, C-terminal; Enolase, N-terminal YP_004389638.1 PFAM: Septum formation initiator; KEGG: dia:Dtpsy_0911 septum formation initiator YP_004389639.1 PFAM: ABC transporter-like; KEGG: rfr:Rfer_1521 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389640.1 KEGG: rfr:Rfer_1523 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004389641.1 KEGG: rfr:Rfer_1524 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004389642.1 KEGG: xtr:100498246 histidine-binding periplasmic protein-like; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004389643.1 PFAM: Heat shock protein Hsp33 protein; KEGG: ajs:Ajs_0994 HSP33 protein YP_004389644.1 KEGG: ajs:Ajs_0993 transferase hexapeptide protein YP_004389645.1 KEGG: dia:Dtpsy_0907 protein of unknown function DUF455; manually curated; PFAM: Protein of unknown function DUF455 YP_004389646.1 KEGG: dia:Dtpsy_0906 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, EAL domain YP_004389647.1 KEGG: dia:Dtpsy_0905 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, EAL domain YP_004389648.1 KEGG: ajs:Ajs_0989 hypothetical protein YP_004389649.1 KEGG: ctt:CtCNB1_2005 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS; PFAM: PAS fold-3 YP_004389650.1 PFAM: Helix-turn-helix, HxlR type; KEGG: mlo:mlr1855 hypothetical protein YP_004389651.1 TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: dia:Dtpsy_2968 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_004389652.1 PFAM: Transposase IS3/IS911family; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911 YP_004389653.1 PFAM: Integrase, catalytic core; KEGG: ajs:Ajs_3784 integrase catalytic subunit YP_004389654.1 KEGG: rso:RSc1775 hemagglutinin-related protein YP_004389655.1 TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; KEGG: ajs:Ajs_3657 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51 YP_004389656.1 KEGG: ajs:Ajs_3656 shikimate 5-dehydrogenase; TIGRFAM: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004389657.1 TIGRFAM: TonB, C-terminal; KEGG: ajs:Ajs_3655 TonB family protein YP_004389658.1 KEGG: ajs:Ajs_3654 ribonuclease II; PFAM: Ribonuclease II/R; SMART: Ribonuclease II/R YP_004389659.1 KEGG: dia:Dtpsy_2963 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004389660.1 KEGG: ajs:Ajs_3652 hypothetical protein YP_004389661.1 PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2961 cytochrome c class I YP_004389662.1 PFAM: O-antigen ligase-related; KEGG: dia:Dtpsy_2960 O-antigen polymerase YP_004389663.1 PFAM: Uncharacterised protein family UPF0227/Esterase YqiA; KEGG: ajs:Ajs_3649 hypothetical protein YP_004389664.1 KEGG: dia:Dtpsy_2957 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein YP_004389665.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: dia:Dtpsy_2956 peptidase U62 modulator of DNA gyrase YP_004389666.1 TIGRFAM: DHAP synthase, class 1; KEGG: dia:Dtpsy_2954 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004389667.1 KEGG: dia:Dtpsy_2953 hypothetical protein YP_004389668.1 TIGRFAM: Murein peptide ligase; KEGG: ajs:Ajs_3642 UDP-N-acetylmuramate; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004389669.1 KEGG: ajs:Ajs_3641 hypothetical protein YP_004389670.1 PFAM: Redoxin; KEGG: dia:Dtpsy_2950 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004389671.1 KEGG: dia:Dtpsy_2949 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment YP_004389672.1 SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: ajs:Ajs_3638 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal YP_004389673.1 TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: ajs:Ajs_3637 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase, PrmA YP_004389674.1 KEGG: dia:Dtpsy_2946 MJ0042 family finger-like protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426 YP_004389675.1 KEGG: dia:Dtpsy_2945 PfkB domain protein; PFAM: Carbohydrate/purine kinase YP_004389676.1 KEGG: dia:Dtpsy_2944 histone protein YP_004389677.1 KEGG: dia:Dtpsy_2943 ribonucleotide-diphosphate reductase subunit beta; PFAM: Ribonucleotide reductase YP_004389678.1 KEGG: ajs:Ajs_3632 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone YP_004389679.1 KEGG: dia:Dtpsy_2941 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004389680.1 KEGG: dia:Dtpsy_2940 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004389681.1 KEGG: dia:Dtpsy_2939 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004389682.1 KEGG: dia:Dtpsy_2938 hypothetical protein YP_004389683.1 PFAM: Cytochrome c assembly protein; KEGG: dia:Dtpsy_2937 cytochrome c assembly protein YP_004389684.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: ajs:Ajs_3626 signal recognition particle subunit FFH/SRP54 (SRP54); SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core YP_004389685.1 TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; PFAM: Radical SAM; Methylthiotransferase, N-terminal; Deoxyribonuclease/rho motif-related TRAM; KEGG: dia:Dtpsy_2935 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB YP_004389686.1 KEGG: aav:Aave_0876 hypothetical protein YP_004389687.1 PFAM: Peptidase M61; KEGG: ajs:Ajs_3622 peptidase M61 domain-containing protein YP_004389688.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_3621 thiol:disulfide interchange protein DsbC YP_004389689.1 KEGG: ajs:Ajs_3620 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding; FAD dependent oxidoreductase YP_004389690.1 KEGG: dia:Dtpsy_2928 GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related YP_004389691.1 KEGG: pap:PSPA7_5324 integrase YP_004389692.1 PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein YP_004389693.1 KEGG: pna:Pnap_4649 IS1477 transposase YP_004389694.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911 YP_004389695.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_004389696.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66 YP_004389697.1 KEGG: bvi:Bcep1808_2622 integrase catalytic subunit YP_004389698.1 KEGG: dar:Daro_1555 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004389699.1 PFAM: DSBA-like thioredoxin domain; KEGG: bpl:BURPS1106A_A3104 thioredoxin domain-containing protein YP_004389700.1 KEGG: app:CAP2UW1_0749 drug resistance transporter, Bcr/CflA subfamily; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004389701.1 PFAM: Protein of unknown function DUF1234; KEGG: bge:BC1002_3447 protein of unknown function DUF1234 YP_004389702.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bph:Bphy_7178 major facilitator transporter YP_004389703.1 PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: reu:Reut_A0020 hypothetical protein YP_004389704.1 KEGG: bph:Bphy_7176 taurine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA YP_004389705.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: reu:Reut_A2148 zinc-containing alcohol dehydrogenase superfamily protein; SMART: Polyketide synthase, enoylreductase YP_004389706.1 PFAM: UspA; Haemerythrin/HHE cation-binding motif; KEGG: reu:Reut_B3843 hypothetical protein YP_004389707.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bge:BC1002_3448 Rieske (2Fe-2S) iron-sulfur domain protein YP_004389708.1 KEGG: reu:Reut_B3844 regulatory protein, LuxR; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004389709.1 PFAM: Protein of unknown function DUF1302; KEGG: lch:Lcho_2162 hypothetical protein YP_004389710.1 PFAM: Protein of unknown function DUF1329; KEGG: lch:Lcho_2163 hypothetical protein YP_004389711.1 KEGG: psa:PST_0617 glycosyl hydrolase YP_004389712.1 KEGG: psa:PST_0618 transporter, putative YP_004389713.1 PFAM: Uncharacterised protein family UPF0324, prokaryote; KEGG: dac:Daci_1990 hypothetical protein YP_004389714.1 KEGG: dia:Dtpsy_2910 hypothetical protein YP_004389715.1 KEGG: dia:Dtpsy_2909 TIM-barrel protein, nifR3 family; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase YP_004389716.1 PFAM: Helix-turn-helix, Fis-type; KEGG: dia:Dtpsy_2908 transcriptional regulator, fis family YP_004389717.1 KEGG: dia:Dtpsy_2907 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: AICARFT/IMPCHase bienzyme; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain YP_004389718.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; KEGG: dia:Dtpsy_2904 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III YP_004389719.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dia:Dtpsy_2903 phosphomethylpyrimidine kinase type-1 YP_004389720.1 KEGG: aav:Aave_0900 rubredoxin-type Fe(Cys)4 protein; manually curated; PFAM: Rubredoxin-type Fe(Cys)4 protein YP_004389721.1 KEGG: aav:Aave_0901 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004389722.1 KEGG: dia:Dtpsy_2900 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004389723.1 KEGG: ajs:Ajs_3576 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004389724.1 KEGG: dia:Dtpsy_2898 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004389725.1 KEGG: dia:Dtpsy_2897 CheA signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, subgroup, homodimeric; CheW-like protein; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; CheW-like protein YP_004389726.1 manually curated; HAMAP: Protein of unknown function DUF179; KEGG: dia:Dtpsy_2896 protein of unknown function DUF179; PFAM: Protein of unknown function DUF179 YP_004389727.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: dia:Dtpsy_2895 Holliday junction resolvase-like protein; HAMAP: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like YP_004389728.1 KEGG: dia:Dtpsy_2894 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004389729.1 PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase, eukaryotic; KEGG: dia:Dtpsy_2893 aspartate carbamoyltransferase catalytic subunit YP_004389730.1 KEGG: dia:Dtpsy_2892 amidohydrolase; PFAM: Amidohydrolase 1 YP_004389731.1 KEGG: dia:Dtpsy_2891 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004389732.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: ajs:Ajs_3566 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004389733.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3565 binding-protein-dependent transport systems inner membrane component YP_004389734.1 KEGG: ajs:Ajs_3564 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like YP_004389735.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: aav:Aave_3965 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_004389736.1 KEGG: vap:Vapar_2384 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004389737.1 KEGG: aav:Aave_3963 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004389738.1 KEGG: ajs:Ajs_3563 cardiolipin synthetase 2 YP_004389739.1 KEGG: app:CAP2UW1_1324 oxidoreductase FAD-binding domain protein; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Cytochrome b/b6, N-terminal; Oxidoreductase FAD/NAD(P)-binding YP_004389740.1 KEGG: app:CAP2UW1_3424 putative cytochrome c oxidase, subunit I YP_004389741.1 KEGG: app:CAP2UW1_1325 hypothetical protein YP_004389742.1 PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; 4Fe-4S binding domain; KEGG: app:CAP2UW1_1327 methyl-viologen-reducing hydrogenase delta subunit YP_004389743.1 PFAM: Copper chaperone SCO1/SenC; KEGG: app:CAP2UW1_1788 electron transport protein SCO1/SenC YP_004389744.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: app:CAP2UW1_1789 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004389745.1 KEGG: app:CAP2UW1_1790 cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I YP_004389746.1 PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: app:CAP2UW1_1791 cytochrome c oxidase subunit II YP_004389747.1 KEGG: mag:amb2220 hypothetical protein YP_004389748.1 PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: avn:Avin_00950 cytochrome oxidase assembly protein YP_004389749.1 PFAM: Protein of unknown function DUF490; KEGG: ajs:Ajs_3561 hypothetical protein YP_004389750.1 PFAM: Bacterial surface antigen (D15); KEGG: dia:Dtpsy_2883 surface antigen (D15) YP_004389751.1 KEGG: ajs:Ajs_3559 hypothetical protein YP_004389752.1 PFAM: MmgE/PrpD; KEGG: nmg:Nmag_3457 MmgE/PrpD family protein YP_004389753.1 PFAM: Crotonase, core; KEGG: pzu:PHZ_c3022 enoyl-CoA hydratase/isomerase family protein YP_004389754.1 KEGG: sti:Sthe_1794 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004389755.1 KEGG: sti:Sthe_3003 formyl-CoA transferase; PFAM: CoA-transferase family III YP_004389756.1 KEGG: bpy:Bphyt_0617 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated YP_004389757.1 KEGG: cti:RALTA_B1738 conserved hypothetical protein; UPF0065 YP_004389758.1 KEGG: dia:Dtpsy_2881 GCN5-related N-acetyltransferase YP_004389759.1 KEGG: ajs:Ajs_3556 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004389760.1 PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2878 cytochrome c class I YP_004389761.1 PFAM: UspA; KEGG: ajs:Ajs_3554 UspA domain-containing protein YP_004389762.1 PFAM: Protein of unknown function DUF1841; KEGG: ajs:Ajs_3553 hypothetical protein YP_004389763.1 TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: dia:Dtpsy_2874 transcriptional regulator, IclR family; SMART: Transcription regulator IclR, N-terminal YP_004389764.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: dia:Dtpsy_2873 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase YP_004389765.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: dia:Dtpsy_2872 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase YP_004389766.1 TIGRFAM: Beta-ketoadipyl CoA thiolase; Thiolase; KEGG: dac:Daci_5563 beta-ketoadipyl CoA thiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004389767.1 KEGG: aav:Aave_3940 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004389768.1 KEGG: dia:Dtpsy_2869 hypothetical protein YP_004389769.1 PFAM: LysR, substrate-binding; KEGG: rec:RHECIAT_CH0001484 putative transcriptional regulator protein, LysR family YP_004389770.1 KEGG: bpt:Bpet0051 putative secreted protein YP_004389771.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: bph:Bphy_3769 amidohydrolase; PFAM: Peptidase M20 YP_004389772.1 KEGG: vap:Vapar_4972 hypothetical protein YP_004389773.1 KEGG: vap:Vapar_4085 hypothetical protein YP_004389774.1 PFAM: MmgE/PrpD; KEGG: vei:Veis_4268 MmgE/PrpD family protein YP_004389775.1 PFAM: PrpF protein; KEGG: cak:Caul_0497 hypothetical protein YP_004389776.1 KEGG: pol:Bpro_2294 hypothetical protein YP_004389777.1 KEGG: cak:Caul_0508 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004389778.1 KEGG: bja:bll0416 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004389779.1 KEGG: cak:Caul_0509 carboxyvinyl-carboxyphosphonate phosphorylmutase; PFAM: Isocitrate lyase/phosphorylmutase YP_004389780.1 KEGG: mav:MAV_1744 transcriptional regulator, GntR family protein; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004389781.1 KEGG: dia:Dtpsy_2868 glutathione-regulated potassium-efflux system protein KefC; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal YP_004389782.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3544 lysine exporter protein LysE/YggA YP_004389783.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_2866 cobyrinic acid ac-diamide synthase YP_004389784.1 KEGG: aav:Aave_3912 hypothetical protein YP_004389785.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_3911 LysR family transcriptional regulator YP_004389786.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: dia:Dtpsy_2864 tRNA/rRNA methyltransferase (SpoU) YP_004389787.1 PFAM: Phosphoribosyltransferase; KEGG: ajs:Ajs_3540 ComF family protein YP_004389788.1 KEGG: ajs:Ajs_3539 biotin synthesis protein BioC YP_004389789.1 KEGG: dia:Dtpsy_2860 cytochrome c oxidase, subunit II; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane domain; Cytochrome c, class I YP_004389790.1 KEGG: ajs:Ajs_3536 cytochrome-c oxidase; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I YP_004389792.1 PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: dia:Dtpsy_2857 cytochrome c oxidase assembly protein YP_004389793.1 PFAM: Protein of unknown function DUF2970; KEGG: dia:Dtpsy_2856 hypothetical protein YP_004389794.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: dia:Dtpsy_2855 cytochrome c oxidase subunit III YP_004389795.1 KEGG: ajs:Ajs_3531 putative transmembrane protein YP_004389796.1 KEGG: dia:Dtpsy_2853 putative transmembrane cytochrome oxidase YP_004389797.1 KEGG: ajs:Ajs_3529 hypothetical protein YP_004389798.1 PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: ajs:Ajs_3528 cytochrome oxidase assembly YP_004389799.1 KEGG: dia:Dtpsy_2850 protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004389800.1 PFAM: Copper chaperone SCO1/SenC; KEGG: dia:Dtpsy_2849 electron transport protein SCO1/SenC YP_004389801.1 KEGG: dia:Dtpsy_2846 hypothetical protein YP_004389802.1 KEGG: dia:Dtpsy_2845 RNA polymerase, sigma 32 subunit, RpoH; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 1.2 YP_004389803.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66 YP_004389804.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_004389805.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911 YP_004389806.1 KEGG: pna:Pnap_4649 IS1477 transposase YP_004389807.1 PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein YP_004389808.1 PFAM: Sporulation-related domain; KEGG: aav:Aave_3575 sporulation domain-containing protein YP_004389809.1 KEGG: ajs:Ajs_0920 hypothetical protein YP_004389810.1 TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; KEGG: dia:Dtpsy_0856 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004389811.1 PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase; KEGG: dia:Dtpsy_0857 putative deoxyribonucleotide triphosphate pyrophosphatase YP_004389812.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: dia:Dtpsy_0858 ribonuclease PH YP_004389813.1 KEGG: dia:Dtpsy_0859 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like YP_004389814.1 KEGG: dia:Dtpsy_0860 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain YP_004389815.1 KEGG: ajs:Ajs_0926 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal YP_004389816.1 KEGG: cag:Cagg_1487 hypothetical protein YP_004389817.1 KEGG: cag:Cagg_1488 hypothetical protein YP_004389818.1 TIGRFAM: Conserved hypothetical protein CHP02243; KEGG: bra:BRADO4376 hypothetical protein YP_004389819.1 TIGRFAM: Conserved hypothetical protein CHP02243; KEGG: chl:Chy400_2341 hypothetical protein YP_004389820.1 PFAM: GPW/gp25; KEGG: cag:Cagg_1491 gpW/GP25 family protein YP_004389821.1 KEGG: aba:Acid345_0852 hypothetical protein YP_004389822.1 PFAM: Phage baseplate assembly protein V; KEGG: nde:NIDE2232 hypothetical protein YP_004389823.1 KEGG: nde:NIDE2231 hypothetical protein YP_004389824.1 KEGG: aba:Acid345_0855 hypothetical protein YP_004389825.1 KEGG: nde:NIDE2229 hypothetical protein YP_004389826.1 KEGG: scl:sce1839 hypothetical protein YP_004389828.1 KEGG: scl:sce2110 hypothetical protein YP_004389829.1 KEGG: nde:NIDE2224 putative ATPase; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004389830.1 KEGG: nde:NIDE2223 hypothetical protein YP_004389831.1 KEGG: dre:100006405 hypothetical LOC100006405 YP_004389832.1 KEGG: scl:sce2087 hypothetical protein YP_004389833.1 KEGG: cag:Cagg_1504 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: Bacteriophage T4, Gp19, tail tube YP_004389834.1 KEGG: nha:Nham_0832 phage tail sheath protein YP_004389835.1 SMART: Guanylate kinase/L-type calcium channel; TIGRFAM: Guanylate kinase, sub-group; KEGG: dia:Dtpsy_0862 guanylate kinase; PFAM: Guanylate kinase YP_004389836.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: dia:Dtpsy_0863 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase, subunit omega/K/RPABC2 YP_004389837.1 KEGG: dia:Dtpsy_0864 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; TGS; Amino acid-binding ACT; Metal-dependent phosphohydrolase, HD subdomain; manually curated; TIGRFAM: RelA/SpoT protein; SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain YP_004389838.1 TIGRFAM: Transcription elongation factor GreB; HAMAP: Transcription elongation factor greA; KEGG: ajs:Ajs_0950 transcription elongation factor GreB; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal YP_004389839.1 KEGG: dia:Dtpsy_0866 hypothetical protein YP_004389840.1 KEGG: xtr:100487598 30S ribosomal protein S15-like; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15 YP_004389841.1 SMART: RNA-binding domain, S1; K Homology; TIGRFAM: Polyribonucleotide nucleotidyltransferase; KEGG: ctt:CtCNB1_1057 3' exoribonuclease; PFAM: Exoribonuclease, phosphorolytic domain 1; Ribosomal protein S1, RNA-binding domain; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type YP_004389842.1 TIGRFAM: Quinone oxidoreductase putative, PIG3; KEGG: dia:Dtpsy_0869 NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like YP_004389843.1 TIGRFAM: Triosephosphate isomerase; KEGG: dia:Dtpsy_0870 triosephosphate isomerase; PFAM: Triosephosphate isomerase YP_004389844.1 KEGG: dia:Dtpsy_0871 preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit YP_004389845.1 KEGG: ajs:Ajs_0957 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YP_004389846.1 TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: dia:Dtpsy_0873 NADH dehydrogenase subunit B; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit YP_004389847.1 KEGG: aav:Aave_1265 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit YP_004389848.1 TIGRFAM: NADH dehydrogenase I, subunit D; KEGG: dia:Dtpsy_0875 NADH dehydrogenase subunit D; PFAM: NADH-quinone oxidoreductase, subunit D YP_004389849.1 TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: dia:Dtpsy_0876 NADH-quinone oxidoreductase, E subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit YP_004389850.1 SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: dia:Dtpsy_0877 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004389851.1 SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: aav:Aave_1269 NADH dehydrogenase subunit G; PFAM: Molybdopterin oxidoreductase; Ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YP_004389852.1 KEGG: dia:Dtpsy_0879 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YP_004389853.1 PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: dia:Dtpsy_0880 NADH dehydrogenase subunit I YP_004389854.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: dia:Dtpsy_0881 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004389855.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: dia:Dtpsy_0882 NADH-ubiquinone oxidoreductase chain 4L YP_004389856.1 TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: dia:Dtpsy_0883 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YP_004389857.1 TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: dia:Dtpsy_0884 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 4, N-terminal YP_004389858.1 TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: dia:Dtpsy_0885 NADH dehydrogenase subunit N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004389859.1 PFAM: Uncharacterised conserved protein UCP019883, membrane; KEGG: dia:Dtpsy_0886 putative transmembrane protein YP_004389860.1 KEGG: dia:Dtpsy_0887 protein of unknown function DUF1178; manually curated; PFAM: Protein of unknown function DUF1178 YP_004389861.1 KEGG: ajs:Ajs_0974 hypothetical protein YP_004389862.1 PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: ajs:Ajs_0977 glutamate dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_004389863.1 SMART: MutL, C-terminal, dimerisation; TIGRFAM: DNA mismatch repair protein, N-terminal; KEGG: ajs:Ajs_0978 DNA mismatch repair protein MutL; HAMAP: DNA mismatch repair protein, MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain YP_004389864.1 KEGG: dia:Dtpsy_0894 17 kDa surface antigen YP_004389865.1 PFAM: SNARE associated Golgi protein; KEGG: dia:Dtpsy_1467 SNARE associated Golgi protein YP_004389866.1 TIGRFAM: Guanine deaminase; KEGG: vap:Vapar_3881 guanine deaminase; PFAM: Amidohydrolase 1 YP_004389867.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: dac:Daci_5908 xanthine/uracil/vitamin C permease YP_004389868.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vap:Vapar_3905 transcriptional regulator, LysR family YP_004389869.1 TIGRFAM: Xanthine dehydrogenase, molybdopterin binding subunit; KEGG: vap:Vapar_3906 xanthine dehydrogenase, molybdopterin binding subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_004389870.1 TIGRFAM: Xanthine dehydrogenase, small subunit; KEGG: dac:Daci_5910 xanthine dehydrogenase small subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding; CO dehydrogenase flavoprotein, C-terminal YP_004389871.1 PFAM: Cupin 2, conserved barrel; KEGG: har:HEAR2969 hypothetical protein YP_004389872.1 KEGG: ajs:Ajs_0983 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic YP_004389873.1 manually curated; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; KEGG: dia:Dtpsy_0899 protein of unknown function UPF0079; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004389874.1 manually curated; TIGRFAM: 4Fe-4S cluster binding; KEGG: xtr:100492313 putative electron transport protein yjeS-like; PFAM: Domain of unknown function DUF1730; 4Fe-4S binding domain YP_004389875.1 PFAM: Auxin efflux carrier; KEGG: dia:Dtpsy_0901 auxin efflux carrier YP_004389876.1 KEGG: dia:Dtpsy_0902 hypothetical protein YP_004389877.1 TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerC; Tyrosine recombinase XerD; KEGG: dia:Dtpsy_0903 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004389878.1 PFAM: Methyltransferase type 11; KEGG: acp:A2cp1_1683 methyltransferase type 11 YP_004389879.1 KEGG: dia:Dtpsy_2971 thiamine biosynthesis protein ThiC; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC YP_004389880.1 KEGG: dia:Dtpsy_2972 hypothetical protein YP_004389881.1 KEGG: dia:Dtpsy_2973 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase YP_004389882.1 KEGG: bav:BAV0211 IclR-family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal YP_004389883.1 PFAM: Putative cyclase; KEGG: aav:Aave_3942 hypothetical protein YP_004389884.1 KEGG: bpt:Bpet0794 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004389885.1 KEGG: bbr:BB4035 putative oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004389886.1 PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_B3887 UreA/short-chain amide ABC transporter YP_004389887.1 KEGG: bav:BAV0225 exported protein YP_004389888.1 KEGG: bav:BAV0226 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004389889.1 TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; KEGG: dia:Dtpsy_2975 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_004389890.1 TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; KEGG: dia:Dtpsy_2976 cell division protein FtsA; SMART: Cell division protein FtsA domain YP_004389891.1 PFAM: Polypeptide-transport-associated, FtsQ-type; Cell division protein FtsQ; KEGG: dia:Dtpsy_2977 cell division protein FtsQ YP_004389892.1 TIGRFAM: D-alanine--D-alanine ligase; KEGG: ajs:Ajs_3668 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal YP_004389893.1 TIGRFAM: UDP-N-acetylmuramate-alanine ligase; KEGG: dia:Dtpsy_2979 UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004389894.1 TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: N-acetylglucosaminyltransferase, MurG; KEGG: aav:Aave_0821 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28 YP_004389895.1 KEGG: ajs:Ajs_3671 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein YP_004389896.1 KEGG: dia:Dtpsy_2982 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_004389897.1 KEGG: dia:Dtpsy_2983 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: Glycosyl transferase, family 4; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004389898.1 TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: ajs:Ajs_3674 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004389899.1 PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: dia:Dtpsy_2985 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_004389900.1 KEGG: dia:Dtpsy_2986 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004389901.1 KEGG: aav:Aave_0814 cell division protein FtsL; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL YP_004389902.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: dia:Dtpsy_2988 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004389903.1 TIGRFAM: MraZ; HAMAP: MraZ; KEGG: dia:Dtpsy_2989 cell division protein MraZ; PFAM: MraZ domain YP_004389904.1 TIGRFAM: Heat shock protein HslU; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: dia:Dtpsy_2990 ATP-dependent protease ATP-binding subunit HslU; SMART: ATPase, AAA+ type, core YP_004389905.1 KEGG: dia:Dtpsy_2991 ATP-dependent protease peptidase subunit; TIGRFAM: ATP-dependent protease, HslV subunit; PFAM: Proteasome, subunit alpha/beta YP_004389906.1 KEGG: dia:Dtpsy_2992 hypothetical protein YP_004389907.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: dia:Dtpsy_2993 transcriptional regulator, TraR/DksA family YP_004389908.1 KEGG: dia:Dtpsy_2994 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YP_004389909.1 KEGG: gpb:HDN1F_32180 hypothetical protein YP_004389910.1 KEGG: dac:Daci_1875 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004389911.1 TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Signal transduction response regulator, receiver domain; KEGG: dac:Daci_1874 response regulator receiver protein; SMART: Signal transduction response regulator, receiver domain YP_004389912.1 KEGG: ctt:CtCNB1_1998 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004389913.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS YP_004389914.1 TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Signal transduction response regulator, receiver domain; KEGG: aav:Aave_2239 response regulator receiver protein; SMART: Signal transduction response regulator, receiver domain YP_004389915.1 KEGG: lch:Lcho_0734 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004389916.1 KEGG: dac:Daci_0737 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain YP_004389917.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS YP_004389918.1 KEGG: lch:Lcho_4371 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004389919.1 KEGG: rfr:Rfer_1480 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004389920.1 KEGG: dia:Dtpsy_2996 tyrosine recombinase XerC; TIGRFAM: Tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004389921.1 PFAM: Protein of unknown function DUF484; KEGG: dia:Dtpsy_2997 protein of unknown function DUF484 YP_004389922.1 TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: dia:Dtpsy_2998 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase YP_004389923.1 manually curated; PFAM: Beta-lactamase-like; NUDIX hydrolase domain; KEGG: dia:Dtpsy_3001 beta-lactamase domain protein; SMART: Beta-lactamase-like YP_004389924.1 KEGG: dia:Dtpsy_3002 RNA-binding S4 domain protein; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004389925.1 KEGG: ajs:Ajs_3722 hypothetical protein YP_004389926.1 TIGRFAM: Cysteine synthase K/M; Cysteine synthase A; KEGG: dac:Daci_1442 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004389927.1 PFAM: Heat shock protein DnaJ, N-terminal; KEGG: bvi:Bcep1808_3882 heat shock protein DnaJ domain-containing protein YP_004389928.1 PFAM: FAD dependent oxidoreductase; KEGG: dia:Dtpsy_3010 FAD dependent oxidoreductase YP_004389929.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: dac:Daci_0909 carboxymuconolactone decarboxylase YP_004389930.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_3510 LysR family transcriptional regulator YP_004389931.1 KEGG: xtr:100489146 citrate lyase subunit beta-like; PFAM: Aldehyde-lyase domain YP_004389932.1 KEGG: dac:Daci_3512 hypothetical protein YP_004389933.1 KEGG: dac:Daci_3513 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004389934.1 KEGG: dac:Daci_3514 amidohydrolase 2; manually curated; PFAM: Amidohydrolase 2 YP_004389935.1 KEGG: dac:Daci_3515 hypothetical protein YP_004389936.1 KEGG: cti:RALTA_B1490 transcriptional activator of cyclohexanecarboxylate anaerobic degradation; MarR type; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004389937.1 TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; KEGG: lch:Lcho_1185 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004389938.1 TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; KEGG: vei:Veis_4105 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core YP_004389939.1 TIGRFAM: Cyclohexanecarboxyl-CoA dehydrogenase; KEGG: lch:Lcho_1187 cyclohexanecarboxyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004389940.1 TIGRFAM: Cyclohexanecarboxylate-CoA ligase; KEGG: pna:Pnap_2126 cyclohexanecarboxylate-CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004389941.1 KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004389942.1 KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004389943.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_3732 2-nitropropane dioxygenase, NPD YP_004389944.1 KEGG: dac:Daci_1400 hypothetical protein YP_004389945.1 KEGG: ajs:Ajs_3734 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004389946.1 KEGG: mrb:Mrub_0164 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004389947.1 PFAM: Crotonase, core; KEGG: xtr:100494378 probable enoyl-CoA hydratase paaG-like YP_004389948.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: dac:Daci_1396 acyl-CoA dehydrogenase domain-containing protein YP_004389949.1 KEGG: ajs:Ajs_3737 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1 YP_004389950.1 TIGRFAM: Thiolase; KEGG: dia:Dtpsy_3019 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal YP_004389951.1 KEGG: dac:Daci_1393 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004389952.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_1392 LysR family transcriptional regulator YP_004389953.1 KEGG: bpe:BP0072 transposase YP_004389954.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004389955.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004389956.1 KEGG: dia:Dtpsy_3022 hypothetical protein YP_004389957.1 PFAM: Peptidase M48; KEGG: ajs:Ajs_3742 heat shock protein HtpX YP_004389958.1 KEGG: ajs:Ajs_3743 putative transmembrane protein YP_004389959.1 PFAM: Amidohydrolase 1; TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase homodimeric type; KEGG: dia:Dtpsy_3026 dihydroorotase YP_004389960.1 PFAM: Protein of unknown function DUF488; KEGG: rfr:Rfer_4130 hypothetical protein YP_004389961.1 KEGG: ote:Oter_3729 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004389962.1 TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter-like; KEGG: ajs:Ajs_3747 UvrA family protein; SMART: ATPase, AAA+ type, core YP_004389963.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3029 extracellular ligand-binding receptor YP_004389964.1 KEGG: ajs:Ajs_3750 hypothetical protein YP_004389965.1 KEGG: ajs:Ajs_3751 porin YP_004389966.1 PFAM: General substrate transporter; KEGG: ajs:Ajs_3752 major facilitator superfamily transporter YP_004389967.1 PFAM: Protein of unknown function DUF485; KEGG: dac:Daci_5956 hypothetical protein YP_004389968.1 KEGG: rpf:Rpic12D_0449 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004389969.1 KEGG: pna:Pnap_0481 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease YP_004389970.1 KEGG: dac:Daci_5960 CBS domain-containing protein; PFAM: Domain of unknown function DUF294, nucleotidyltransferase putative; Cystathionine beta-synthase, core; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: Cystathionine beta-synthase, core; Cyclic nucleotide-binding domain YP_004389971.1 PFAM: DSBA-like thioredoxin domain; KEGG: dac:Daci_5961 DsbA oxidoreductase YP_004389972.1 KEGG: dia:Dtpsy_3035 protein of unknown function DUF1289; manually curated; PFAM: Protein of unknown function DUF1289 YP_004389973.1 PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: aav:Aave_4348 YbaK/prolyl-tRNA synthetase associated region YP_004389974.1 KEGG: ajs:Ajs_3757 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase YP_004389975.1 KEGG: dia:Dtpsy_3039 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_004389976.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: ajs:Ajs_3759 3-methylcrotonoyl-CoA carboxylase, alpha subunit; SMART: Biotin carboxylase, C-terminal YP_004389977.1 KEGG: dia:Dtpsy_3041 putative transmembrane protein YP_004389978.1 PFAM: Crotonase, core; KEGG: ajs:Ajs_3761 enoyl-CoA hydratase YP_004389979.1 KEGG: dia:Dtpsy_3044 propionyl-CoA carboxylase; PFAM: Carboxyl transferase YP_004389980.1 KEGG: ajs:Ajs_3764 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase YP_004389981.1 KEGG: dia:Dtpsy_3046 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004389982.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: ajs:Ajs_3767 glutathione S-transferase domain-containing protein YP_004389983.1 KEGG: xtr:100491709 choline dehydrogenase-like; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004389984.1 PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_0291 extracellular ligand-binding receptor YP_004389985.1 PFAM: ABC transporter permease; KEGG: axy:AXYL_06412 inner-membrane translocator 70 YP_004389986.1 PFAM: ABC transporter-like; ABC transporter permease; KEGG: axy:AXYL_06411 inner-membrane translocator 69; SMART: ATPase, AAA+ type, core YP_004389987.1 PFAM: ABC transporter-like; KEGG: axy:AXYL_06410 ABC transporter family protein 103; SMART: ATPase, AAA+ type, core YP_004389988.1 KEGG: vei:Veis_0287 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004389989.1 KEGG: ajs:Ajs_3769 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004389990.1 KEGG: ctt:CtCNB1_3118 transcriptional regulator, GntR family; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004389991.1 TIGRFAM: Hydroxymethylglutaryl-CoA reductase, bacterial type; KEGG: xtr:100492358 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like; PFAM: Hydroxymethylglutaryl-CoA reductase, class I/II YP_004389992.1 KEGG: dia:Dtpsy_3047 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004389993.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: dia:Dtpsy_3048 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted YP_004389994.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dia:Dtpsy_3049 extracellular solute-binding protein family 5 YP_004389995.1 KEGG: rfr:Rfer_2484 hypothetical protein YP_004389996.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: rfr:Rfer_2485 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004389997.1 KEGG: dac:Daci_5982 hypothetical protein YP_004389998.1 KEGG: pna:Pnap_0218 hypothetical protein YP_004389999.1 PFAM: Protein of unknown function DUF421; KEGG: aav:Aave_4363 hypothetical protein YP_004390000.1 PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; KEGG: axy:AXYL_04090 transcriptional regulator family protein 21 YP_004390001.1 KEGG: aav:Aave_4364 peptidase E; PFAM: Peptidase S51 YP_004390002.1 PFAM: Protein of unknown function DUF1177; KEGG: axy:AXYL_04088 hypothetical protein YP_004390003.1 PFAM: Uncharacterised protein family AroM; KEGG: axy:AXYL_04087 AroM family protein YP_004390004.1 KEGG: axy:AXYL_04086 extra-cytoplasmic solute receptor family protein 94 YP_004390005.1 KEGG: ajs:Ajs_3774 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004390006.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3053 short chain dehydrogenase YP_004390007.1 TIGRFAM: Thiolase; KEGG: ctt:CtCNB1_0487 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004390008.1 HAMAP: Isocitrate dehydrogenase kinasephosphatase; KEGG: ajs:Ajs_3777 bifunctional isocitrate dehydrogenase kinase/phosphatase protein; PFAM: Isocitrate dehydrogenase kinasephosphatase YP_004390009.1 PFAM: Carbonic anhydrase; KEGG: dia:Dtpsy_3056 carbonate dehydratase; SMART: Carbonic anhydrase YP_004390010.1 KEGG: ajs:Ajs_3779 isovaleryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004390011.1 KEGG: dia:Dtpsy_3058 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004390012.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_3785 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004390013.1 PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain; KEGG: dia:Dtpsy_3060 response regulator receiver modulated CheB methylesterase; SMART: Signal transduction response regulator, receiver domain YP_004390014.1 KEGG: ajs:Ajs_3787 chemoreceptor glutamine deamidase CheD; PFAM: Chemoreceptor glutamine deamidase CheD YP_004390015.1 PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: dia:Dtpsy_3062 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type YP_004390016.1 KEGG: dia:Dtpsy_3063 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004390017.1 KEGG: ajs:Ajs_3790 CheA signal transduction histidine kinases; PFAM: CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain YP_004390018.1 KEGG: dia:Dtpsy_3065 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004390019.1 KEGG: dia:Dtpsy_3066 hypothetical protein YP_004390020.1 KEGG: ajs:Ajs_3793 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain YP_004390021.1 KEGG: dia:Dtpsy_3068 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal YP_004390022.1 KEGG: ajs:Ajs_3795 flagellar biosynthetic protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein YP_004390023.1 KEGG: ajs:Ajs_3796 flagellar biosynthetic protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3 YP_004390024.1 KEGG: ajs:Ajs_3797 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein YP_004390025.1 PFAM: Flagellar biosynthesis protein, FliO; KEGG: dia:Dtpsy_3072 flagellar biosynthesis protein FliO YP_004390026.1 KEGG: dia:Dtpsy_3073 flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA) YP_004390027.1 KEGG: dia:Dtpsy_3074 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA) YP_004390028.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: dia:Dtpsy_3075 flagellar basal body-associated protein FliL YP_004390029.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: ajs:Ajs_3802 flagellar hook-length control protein YP_004390030.1 KEGG: dia:Dtpsy_3077 flagellar export protein FliJ; TIGRFAM: Flagellar export FliJ; PFAM: Flagellar export FliJ YP_004390031.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Flagellar export ATPase, FliI, clade 1; ATPase, type III secretion system, FliI/YscN; KEGG: dia:Dtpsy_3078 ATPase FliI/YscN; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain YP_004390032.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: dia:Dtpsy_3079 flagellar assembly protein FliH YP_004390033.1 KEGG: dia:Dtpsy_3080 flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG, C-terminal YP_004390034.1 KEGG: dia:Dtpsy_3081 flagellar M-ring protein FliF; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal YP_004390035.1 KEGG: dia:Dtpsy_3082 flagellar hook-basal body complex subunit FliE; TIGRFAM: Flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE YP_004390036.1 PFAM: Flagellar export chaperone, FliT; KEGG: dia:Dtpsy_3083 flagellar protein FliT YP_004390037.1 KEGG: dia:Dtpsy_3084 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS YP_004390038.1 PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; Flagellin hook, IN motif; KEGG: aav:Aave_4399 flagellar hook-associated 2 domain-containing protein YP_004390039.1 PFAM: Flagellin, D0/D1 domain; Flagellin hook, IN motif; KEGG: aav:Aave_4400 flagellin domain-containing protein YP_004390040.1 PFAM: Flagellin, D0/D1 domain; Flagellin hook, IN motif; KEGG: aav:Aave_4401 flagellin domain-containing protein YP_004390041.1 KEGG: psa:PST_1402 hypothetical protein; manually curated; PFAM: Glycosyl transferase, family 2; Capsule polysaccharide biosynthesis YP_004390042.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; Acylneuraminate cytidylyltransferase; KEGG: syd:Syncc9605_2247 demethylmenaquinone methyltransferase-like YP_004390043.1 KEGG: dia:Dtpsy_3088 MotA/TolQ/ExbB proton channel; TIGRFAM: Flagellar motor stator, MotA; PFAM: MotA/TolQ/ExbB proton channel YP_004390044.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_3089 OmpA/MotB domain protein YP_004390045.1 KEGG: dia:Dtpsy_3090 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004390046.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: ajs:Ajs_3818 chemotaxis phosphatase, CheZ YP_004390047.1 PFAM: Type III secretion exporter; KEGG: dia:Dtpsy_3092 type III secretion exporter YP_004390048.1 KEGG: dia:Dtpsy_3093 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP YP_004390049.1 TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: ajs:Ajs_3821 GTP-binding signal recognition particle; SMART: ATPase, AAA+ type, core YP_004390050.1 KEGG: ajs:Ajs_3822 hypothetical protein YP_004390051.1 KEGG: dia:Dtpsy_3096 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 YP_004390052.1 KEGG: ajs:Ajs_3824 hypothetical protein YP_004390053.1 KEGG: dia:Dtpsy_3098 anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor, FlgM; PFAM: Anti-sigma-28 factor, FlgM YP_004390054.1 TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; KEGG: dia:Dtpsy_3099 flagella basal body P-ring formation protein FlgA; SMART: SAF domain YP_004390055.1 KEGG: ajs:Ajs_3827 flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal YP_004390056.1 KEGG: dia:Dtpsy_3101 flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004390057.1 PFAM: Flagellar hook capping protein; KEGG: dia:Dtpsy_3102 flagellar hook capping protein YP_004390058.1 KEGG: aav:Aave_4423 hypothetical protein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004390059.1 KEGG: dia:Dtpsy_3104 flagellar basal-body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal YP_004390060.1 KEGG: dia:Dtpsy_3105 flagellar basal-body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004390061.1 PFAM: Flagellar L-ring protein; KEGG: aav:Aave_4426 flagellar L-ring protein YP_004390062.1 PFAM: Flagellar P-ring protein; KEGG: aav:Aave_4428 flagellar basal body P-ring protein YP_004390063.1 KEGG: ajs:Ajs_3836 flagellar rod assembly protein/muramidase FlgJ; TIGRFAM: Flagellar protein FlgJ type-2; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ, N-terminal YP_004390064.1 KEGG: dia:Dtpsy_3110 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004390065.1 KEGG: aav:Aave_4431 flagellar hook-associated protein 3; TIGRFAM: Flagellar hook-associated protein 3; PFAM: Flagellin, D0/D1 domain YP_004390066.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_3839 putative signal transduction protein YP_004390067.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_3841 2-nitropropane dioxygenase, NPD YP_004390068.1 KEGG: dia:Dtpsy_3115 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004390069.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3843 hypothetical protein YP_004390070.1 PFAM: Drug/metabolite transporter; KEGG: vap:Vapar_0746 protein of unknown function DUF6 transmembrane YP_004390071.1 PFAM: Aminotransferase, class I/classII; KEGG: ajs:Ajs_3845 GntR family transcriptional regulator YP_004390072.1 KEGG: dia:Dtpsy_3119 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004390073.1 KEGG: dia:Dtpsy_3120 hypothetical protein; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004390074.1 KEGG: dia:Dtpsy_3121 hypothetical protein YP_004390075.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3122 extracellular ligand-binding receptor YP_004390076.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dia:Dtpsy_3123 short-chain dehydrogenase/reductase SDR YP_004390077.1 KEGG: dia:Dtpsy_3124 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004390078.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pmy:Pmen_1813 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004390079.1 PFAM: GLE1, N-terminal, bacteria; KEGG: vap:Vapar_4773 protein of unknown function DUF461 YP_004390080.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: ctt:CtCNB1_0607 TonB-dependent receptor YP_004390081.1 KEGG: vap:Vapar_2119 hypothetical protein YP_004390082.1 PFAM: Creatininase; KEGG: dia:Dtpsy_3125 creatininase YP_004390083.1 KEGG: dac:Daci_0588 hypothetical protein YP_004390084.1 KEGG: dia:Dtpsy_3127 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane domain YP_004390085.1 PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: vap:Vapar_0729 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004390086.1 PFAM: Protein of unknown function DUF81; KEGG: har:HEAR3236 hypothetical protein YP_004390087.1 PFAM: Peptidoglycan binding-like; YkuD domain; KEGG: bpt:Bpet1138 peptidoglycan binding-like domain-containing protein YP_004390088.1 TIGRFAM: Uroporphyrinogen decarboxylase HemE; KEGG: ajs:Ajs_3861 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_004390089.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: dia:Dtpsy_3135 primosomal protein N'; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004390090.1 TIGRFAM: Thiolase; KEGG: dia:Dtpsy_0032 beta-ketothiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004390091.1 PFAM: Crotonase, core; KEGG: dac:Daci_0026 enoyl-CoA hydratase/isomerase YP_004390092.1 KEGG: dac:Daci_0027 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase YP_004390093.1 KEGG: xtr:100489501 high-affinity branched-chain amino acid transport ATP-binding protein livF-like; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004390094.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0029 extracellular ligand-binding receptor YP_004390095.1 PFAM: ABC transporter permease; KEGG: rfr:Rfer_4064 inner-membrane translocator YP_004390096.1 PFAM: ABC transporter permease; KEGG: dac:Daci_0031 inner-membrane translocator YP_004390097.1 PFAM: ABC transporter-like; KEGG: dac:Daci_0032 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004390098.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_0033 TetR family transcriptional regulator YP_004390099.1 PFAM: Auxin efflux carrier; KEGG: ajs:Ajs_3864 auxin efflux carrier YP_004390100.1 PFAM: DNA helicase, UvrD/REP type; KEGG: dia:Dtpsy_3138 UvrD/REP helicase YP_004390101.1 manually curated; KEGG: dia:Dtpsy_3139 hypothetical protein YP_004390102.1 KEGG: dia:Dtpsy_3140 phospholipase A1; PFAM: Phospholipase A1 YP_004390103.1 PFAM: Sulphatase-modifying factor; KEGG: axy:AXYL_03118 hypothetical protein YP_004390104.1 PFAM: Sulfatase; KEGG: axy:AXYL_03117 arylsulfatase YP_004390105.1 KEGG: axy:AXYL_03122 metapyrocatechase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004390106.1 KEGG: reu:Reut_B4679 monooxygenase, FAD-binding; PFAM: Monooxygenase, FAD-binding YP_004390107.1 KEGG: reu:Reut_B4678 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004390108.1 KEGG: vap:Vapar_4252 porin YP_004390109.1 KEGG: axy:AXYL_03119 GntR family regulatory protein 35; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004390110.1 KEGG: dia:Dtpsy_3141 hypothetical protein YP_004390111.1 PFAM: UspA; KEGG: dia:Dtpsy_3142 UspA domain protein YP_004390112.1 PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: dia:Dtpsy_3143 queuine tRNA-ribosyltransferase YP_004390113.1 KEGG: dia:Dtpsy_3145 hypothetical protein YP_004390114.1 TIGRFAM: PAS; PFAM: PAS fold; KEGG: dar:Daro_3803 PAS; SMART: PAS; PAC motif YP_004390115.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: dac:Daci_4431 6-phosphogluconate dehydrogenase NAD-binding YP_004390116.1 KEGG: dac:Daci_4430 hypothetical protein YP_004390117.1 KEGG: dac:Daci_5794 hypothetical protein YP_004390118.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4429 hypothetical protein YP_004390119.1 KEGG: bpt:Bpet0387 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004390120.1 KEGG: ajs:Ajs_3878 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; Major facilitator superfamily MFS-1; SMART: Phospholipid/glycerol acyltransferase YP_004390121.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: pna:Pnap_0392 ATP-dependent metalloprotease FtsH; PFAM: ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; Peptidase M41 YP_004390122.1 PFAM: Phosphoribosyltransferase; KEGG: tbd:Tbd_0103 transcriptional regulator PyrR, putative YP_004390123.1 KEGG: rfr:Rfer_0394 phosphoribosyltransferase YP_004390124.1 PFAM: Dienelactone hydrolase; KEGG: rfr:Rfer_0395 dienelactone hydrolase YP_004390125.1 KEGG: azo:azo0111 putative alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 2; PFAM: Alcohol dehydrogenase GroES-like YP_004390126.1 KEGG: dia:Dtpsy_3156 hypothetical protein YP_004390127.1 PFAM: Monooxygenase, FAD-binding; KEGG: ajs:Ajs_3884 FAD dependent oxidoreductase YP_004390128.1 KEGG: ajs:Ajs_3885 uncharacterized peroxidase-related enzyme; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004390129.1 KEGG: dia:Dtpsy_3160 domain of unknown function DUF1745; PFAM: FIST domain, N-terminal; FIST C domain; SMART: FIST domain, N-terminal YP_004390130.1 KEGG: dia:Dtpsy_3161 hypothetical protein YP_004390131.1 PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_3162 histone family protein DNA-binding protein YP_004390132.1 KEGG: ajs:Ajs_3890 protein tyrosine/serine phosphatase YP_004390133.1 KEGG: neu:NE1310 HipA protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal YP_004390134.1 TIGRFAM: Transcription regulator, HipB-like; PFAM: Helix-turn-helix type 3; KEGG: neu:NE1311 helix-hairpin-helix DNA-binding motif-containing protein; SMART: Helix-turn-helix type 3 YP_004390135.1 KEGG: pol:Bpro_2745 putative transposase YP_004390136.1 KEGG: pol:Bpro_2744 hypothetical protein YP_004390137.1 PFAM: Transposase, IS4-like; KEGG: bvi:Bcep1808_6138 transposase, IS4 family protein YP_004390138.1 KEGG: pna:Pnap_4724 transposase YP_004390139.1 KEGG: ajs:Ajs_2099 putative signal peptide YP_004390140.1 KEGG: ajs:Ajs_2100 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004390141.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004390142.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004390143.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10 YP_004390144.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004390145.1 KEGG: azc:AZC_0960 cytochrome c; manually curated; PFAM: Cytochrome c, class I YP_004390146.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: cwo:Cwoe_1511 fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_004390147.1 PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G YP_004390148.1 KEGG: sti:Sthe_2310 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_004390149.1 KEGG: tro:trd_0578 aldehyde oxidase small subunit; PFAM: [2Fe-2S]-binding; Ferredoxin YP_004390150.1 KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding YP_004390151.1 KEGG: cwo:Cwoe_3936 peptidase S15 YP_004390152.1 KEGG: ctt:CtCNB1_3512 ATPase associated with various cellular; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core YP_004390153.1 KEGG: dac:Daci_2252 VWA containing CoxE family protein YP_004390154.1 PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G YP_004390155.1 PFAM: XdhC- CoxI; KEGG: pol:Bpro_0572 hypothetical protein YP_004390156.1 KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase YP_004390157.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cak:Caul_0225 TetR family transcriptional regulator YP_004390158.1 KEGG: cti:RALTA_B1677 conserved hypothetical protein; UPF0065 YP_004390159.1 KEGG: cwo:Cwoe_3936 peptidase S15 YP_004390160.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: slo:Shew_2868 acyl-CoA dehydrogenase domain-containing protein YP_004390161.1 manually curated; KEGG: xtr:100493475 peroxisomal bifunctional enzyme-like; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004390162.1 TIGRFAM: Thiolase; KEGG: vap:Vapar_5357 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004390163.1 KEGG: reu:Reut_C6403 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004390164.1 KEGG: psa:PST_1119 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004390165.1 PFAM: ABC transporter-like; KEGG: azc:AZC_1416 sugar ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004390166.1 PFAM: ABC transporter permease; KEGG: reu:Reut_B4134 inner-membrane translocator YP_004390167.1 PFAM: ABC transporter permease; KEGG: reu:Reut_B4135 inner-membrane translocator YP_004390168.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: azc:AZC_1419 ABC transporter sugar-binding protein YP_004390169.1 PFAM: Transposase, IS4-like; KEGG: pol:Bpro_1661 IS4 family transposase YP_004390170.1 PFAM: Integrase, catalytic core, phage; KEGG: tmz:Tmz1t_0371 integrase family protein YP_004390171.1 PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: tmz:Tmz1t_0370 integrase family protein YP_004390172.1 PFAM: Transposase, IS801/IS1294; KEGG: pol:Bpro_4805 putative transposase YP_004390173.1 TIGRFAM: Ribosomal protein L17; HAMAP: Ribosomal protein L17; KEGG: dia:Dtpsy_0399 50S ribosomal protein L17; PFAM: Ribosomal protein L17 YP_004390174.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase, alpha subunit, C-terminal; DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; KEGG: dia:Dtpsy_0398 DNA-directed RNA polymerase subunit alpha; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type YP_004390175.1 TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4/S9, N-terminal; RNA-binding S4; KEGG: aav:Aave_0625 30S ribosomal protein S4; SMART: RNA-binding S4 YP_004390176.1 KEGG: aav:Aave_0624 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11 YP_004390177.1 KEGG: dia:Dtpsy_0395 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13 YP_004390178.1 TIGRFAM: Ribosomal protein L36; HAMAP: Ribosomal protein L36; KEGG: ctt:CtCNB1_4432 ribosomal protein L36; PFAM: Ribosomal protein L36 YP_004390179.1 manually curated; TIGRFAM: SecY protein; KEGG: dia:Dtpsy_0393 preprotein translocase subunit SecY; PFAM: SecY protein YP_004390180.1 KEGG: ctt:CtCNB1_4434 ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L18e/L15 YP_004390181.1 KEGG: dia:Dtpsy_0391 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30, ferredoxin-like fold domain YP_004390182.1 KEGG: dia:Dtpsy_0390 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal YP_004390183.1 KEGG: dia:Dtpsy_0389 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5 YP_004390184.1 KEGG: dia:Dtpsy_0388 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain YP_004390185.1 PFAM: Ribosomal protein S8; KEGG: aav:Aave_0615 30S ribosomal protein S8 YP_004390186.1 KEGG: dia:Dtpsy_0386 30S ribosomal protein S14; HAMAP: Ribosomal protein S14, bacterial/plastid; PFAM: Ribosomal protein S14 YP_004390187.1 PFAM: Ribosomal protein L5; KEGG: dia:Dtpsy_0385 50S ribosomal protein L5 YP_004390188.1 TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: dia:Dtpsy_0384 50S ribosomal protein L24; SMART: KOW YP_004390189.1 KEGG: dia:Dtpsy_0383 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e YP_004390190.1 KEGG: aav:Aave_0610 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004390191.1 KEGG: ajs:Ajs_0383 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004390192.1 PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; TIGRFAM: Glycerol kinase; HAMAP: Glycerol kinase; KEGG: dia:Dtpsy_0373 glycerol kinase YP_004390193.1 TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: dia:Dtpsy_0372 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004390194.1 PFAM: Spore coat protein CotH; KEGG: glo:Glov_2109 spore coat protein CotH YP_004390195.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate polyprenyl transferase; KEGG: dia:Dtpsy_0371 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase YP_004390196.1 PFAM: Ferritin/Dps protein; KEGG: dia:Dtpsy_0369 ferritin Dps family protein YP_004390197.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0368 transcriptional regulator, LysR family YP_004390198.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: ajs:Ajs_0376 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004390199.1 TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: dia:Dtpsy_0366 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain YP_004390200.1 KEGG: dia:Dtpsy_0365 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein YP_004390201.1 PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0373 hypothetical protein YP_004390202.1 KEGG: ctt:CtCNB1_4698 gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase YP_004390203.1 KEGG: vei:Veis_0179 hypothetical protein YP_004390204.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_0178 LysR family transcriptional regulator YP_004390205.1 TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: dia:Dtpsy_0363 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like YP_004390206.1 KEGG: dia:Dtpsy_0361 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_004390207.1 KEGG: ctt:CtCNB1_4464 hypothetical protein YP_004390208.1 PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: dia:Dtpsy_0359 anthranilate phosphoribosyltransferase YP_004390209.1 TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: dia:Dtpsy_0358 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004390210.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region YP_004390211.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein YP_004390213.1 KEGG: avn:Avin_32410 hypothetical protein; PFAM: RES; SMART: RES YP_004390214.1 KEGG: avn:Avin_32400 hypothetical protein YP_004390215.1 KEGG: dia:Dtpsy_0357 chorismate mutase; PFAM: Chorismate mutase, type II; SMART: Chorismate mutase YP_004390216.1 TIGRFAM: Anthranilate synthase component I, PabB-like; KEGG: dia:Dtpsy_0356 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004390217.1 KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004390218.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; HAMP linker domain; KEGG: slt:Slit_0879 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; HAMP linker domain; PAC motif YP_004390219.1 TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: dia:Dtpsy_0352 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004390220.1 KEGG: ajs:Ajs_0362 hypothetical protein YP_004390221.1 TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: dia:Dtpsy_0350 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase YP_004390222.1 KEGG: dia:Dtpsy_0349 ApaG; HAMAP: Uncharacterised protein family ApaG; PFAM: ApaG domain YP_004390223.1 PFAM: Site-specific recombinase Gcr; KEGG: ajs:Ajs_0359 putative site-specific recombinase transmembrane protein YP_004390224.1 PFAM: Cation/H+ exchanger; KEGG: dia:Dtpsy_0347 sodium/hydrogen exchanger YP_004390225.1 TIGRFAM: Carboxylate-amine ligase, predicted; HAMAP: Carboxylate-amine ligase, predicted; KEGG: dia:Dtpsy_0346 carboxylate-amine ligase; PFAM: Glutamate--cysteine ligase, GCS2 YP_004390226.1 TIGRFAM: Thiamine-monophosphate kinase; KEGG: xtr:100495996 thiamine-monophosphate kinase-like; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal YP_004390227.1 KEGG: rfr:Rfer_2221 hypothetical protein YP_004390228.1 KEGG: har:HEAR3117 putative type 4 fimbrial biogenesis transmembrane protein YP_004390229.1 KEGG: lch:Lcho_2905 Tfp pilus assembly protein FimT YP_004390230.1 TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: lch:Lcho_2906 hypothetical protein YP_004390231.1 KEGG: lch:Lcho_2907 type IV pilus assembly protein PilW YP_004390232.1 KEGG: lch:Lcho_2908 type IV pilus assembly protein PilX YP_004390233.1 KEGG: mep:MPQ_2531 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004390234.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: axy:AXYL_05659 TetR family regulatory protein 27 YP_004390235.1 PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; KEGG: eba:ebA5073 putative poly-beta-hydroxyalkanoate synthase YP_004390236.1 KEGG: aav:Aave_2051 enoyl-(acyl carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004390237.1 KEGG: har:HEAR2593 putative outer membrane transport protein involved in copper (silver) tolerance (CusC); TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004390238.1 PFAM: Secretion protein HlyD; KEGG: axy:AXYL_05661 HlyD family secretion family protein 5 YP_004390239.1 PFAM: ABC transporter-like; ABC-2 type transporter; KEGG: ajs:Ajs_2361 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004390240.1 PFAM: ABC-2 type transporter; KEGG: bav:BAV1815 ABC transporter, permease protein YP_004390241.1 KEGG: rpf:Rpic12D_4426 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; MaoC-like dehydratase YP_004390242.1 TIGRFAM: Acetate kinase; KEGG: har:HEAR1515 acetate kinase (acetokinase); PFAM: Acetate/butyrate kinase YP_004390243.1 PFAM: Phosphatidylglycerophosphatase A; KEGG: dia:Dtpsy_0344 phosphatidylglycerophosphatase A YP_004390244.1 KEGG: ajs:Ajs_0354 CinA domain-containing protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004390245.1 KEGG: lch:Lcho_3216 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004390246.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; HAMP linker domain; KEGG: slt:Slit_1460 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; HAMP linker domain YP_004390247.1 KEGG: nhl:Nhal_1312 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; ANTAR; SMART: Signal transduction response regulator, receiver domain YP_004390248.1 KEGG: lch:Lcho_2722 putative signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; PAS fold-4; ATPase-like, ATP-binding domain YP_004390249.1 PFAM: SEC-C motif; KEGG: dia:Dtpsy_0342 sec-C motif domain protein YP_004390250.1 KEGG: dia:Dtpsy_0340 hypothetical protein; TIGRFAM: Protein of unknown function DUF132; SMART: Nucleotide binding protein, PINc YP_004390251.1 PFAM: Putative RNA methylase; THUMP; KEGG: ajs:Ajs_0350 putative RNA methylase; SMART: THUMP YP_004390252.1 KEGG: aav:Aave_0421 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004390253.1 KEGG: ajs:Ajs_0349 hypothetical protein YP_004390254.1 KEGG: dia:Dtpsy_0337 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54 YP_004390255.1 PFAM: ABC transporter-like; KEGG: aav:Aave_0418 ABC transporter-related protein; SMART: ATPase, AAA+ type, core YP_004390256.1 KEGG: dia:Dtpsy_0335 lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: Lipopolysccharide assembly, LptA; PFAM: Organic solvent tolerance-like, N-terminal YP_004390257.1 PFAM: DSBA-like thioredoxin domain; KEGG: dia:Dtpsy_0334 DsbA oxidoreductase YP_004390258.1 PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_0333 sporulation domain protein YP_004390259.1 TIGRFAM: Arginyl-tRNA synthetase, class Ic; KEGG: ajs:Ajs_0343 arginyl-tRNA synthetase YP_004390260.1 PFAM: Phosphate-starvation-induced PsiF repeat; KEGG: dia:Dtpsy_0331 PsiF repeat protein YP_004390261.1 PFAM: Protein of unknown function DUF2214, membrane; KEGG: ajs:Ajs_0341 putative transmembrane protein YP_004390262.1 KEGG: dac:Daci_2923 sodium:dicarboxylate symporter; HAMAP: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter YP_004390263.1 KEGG: dac:Daci_2922 PAS/PAC sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain YP_004390264.1 KEGG: dac:Daci_2921 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain YP_004390265.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0328 transcriptional regulator, LysR family YP_004390266.1 TIGRFAM: Malate synthase G; KEGG: dia:Dtpsy_0327 malate synthase G; PFAM: Malate synthase YP_004390267.1 manually curated; KEGG: ajs:Ajs_0337 hypothetical protein YP_004390268.1 KEGG: dia:Dtpsy_0325 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase, bacteria/archaea; PFAM: 4-oxalocrotonate tautomerase YP_004390269.1 PFAM: Protein of unknown function DUF169; KEGG: bbt:BBta_4610 hypothetical protein YP_004390270.1 PFAM: Glutamine amidotransferase, class-II; KEGG: ajs:Ajs_0335 glutamine amidotransferase, class-II YP_004390271.1 TIGRFAM: Glutathione synthetase, prokaryotic; KEGG: dia:Dtpsy_3256 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal YP_004390272.1 KEGG: dia:Dtpsy_3257 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein YP_004390273.1 KEGG: aav:Aave_4541 K+ potassium transporter; HAMAP: Potassium uptake protein, low affinity, Kup; PFAM: K+ potassium transporter YP_004390274.1 KEGG: dia:Dtpsy_3259 glutamate/cysteine ligase; TIGRFAM: Glutamate--cysteine ligase GshA; PFAM: Glutamate--cysteine ligase GshA YP_004390275.1 PFAM: Cation transporter; KEGG: dac:Daci_5998 cation transporter YP_004390276.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: dia:Dtpsy_3261 potassium transporter peripheral membrane component YP_004390277.1 PFAM: Aldehyde dehydrogenase domain; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: ajs:Ajs_3913 gamma-glutamyl phosphate reductase YP_004390279.1 KEGG: ank:AnaeK_1753 RimK domain protein ATP-grasp YP_004390280.1 PFAM: Peptidase M12A, astacin; KEGG: cph:Cpha266_0056 peptidase M12A, astacin; SMART: Peptidase, metallopeptidase YP_004390281.1 KEGG: dia:Dtpsy_3263 hypothetical protein YP_004390282.1 KEGG: dia:Dtpsy_3264 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta YP_004390283.1 PFAM: Lipopolysccharide assembly, LptE; KEGG: dia:Dtpsy_3265 rare lipoprotein B YP_004390284.1 TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: ajs:Ajs_3917 leucyl-tRNA synthetase YP_004390285.1 PFAM: Mechanosensitive ion channel MscS; KEGG: ajs:Ajs_3919 MscS mechanosensitive ion channel YP_004390286.1 PFAM: Aldehyde dehydrogenase domain; KEGG: bmj:BMULJ_03133 NAD-dependent aldehyde dehydrogenase YP_004390287.1 KEGG: pna:Pnap_0735 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004390288.1 PFAM: Cytochrome c, class I; KEGG: pna:Pnap_0736 cytochrome c-type protein YP_004390289.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold; GAF; Diguanylate phosphodiesterase, EAL domain; KEGG: bxe:Bxe_C0015 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; GAF YP_004390290.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_3920 biopolymer transport protein ExbD/TolR YP_004390291.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_3269 MotA/TolQ/ExbB proton channel YP_004390292.1 TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; KEGG: ajs:Ajs_3922 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, N-terminal YP_004390293.1 PFAM: Lipoprotein SmpA/OmlA; KEGG: dia:Dtpsy_3271 SmpA/OmlA domain protein YP_004390294.1 PFAM: Ferric-uptake regulator; KEGG: dia:Dtpsy_3272 ferric uptake regulator, Fur family YP_004390295.1 PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, N-terminal; KEGG: dia:Dtpsy_3273 HPr kinase/phosphorylase YP_004390296.1 PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: ajs:Ajs_3926 PTS IIA-like nitrogen-regulatory protein PtsN YP_004390297.1 KEGG: dia:Dtpsy_3275 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein YP_004390298.1 TIGRFAM: SAICAR synthetase; KEGG: dia:Dtpsy_3276 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_004390299.1 KEGG: dia:Dtpsy_3279 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004390300.1 TIGRFAM: Phosphoribosylaminoimidazole carboxylase, core; KEGG: dia:Dtpsy_3282 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: Phosphoribosylaminoimidazole carboxylase, core YP_004390301.1 TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: dia:Dtpsy_3283 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004390302.1 KEGG: ajs:Ajs_3936 translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5 YP_004390303.1 PFAM: Lipase, GDSL; KEGG: ajs:Ajs_3937 lipase YP_004390304.1 PFAM: Outer membrane protein, OmpW; KEGG: pna:Pnap_1827 OmpW family protein YP_004390305.1 KEGG: pna:Pnap_1828 hypothetical protein YP_004390306.1 TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: dia:Dtpsy_3288 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_004390307.1 KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease YP_004390308.1 KEGG: dia:Dtpsy_3290 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004390309.1 KEGG: dia:Dtpsy_3291 phage SPO1 DNA polymerase-related protein YP_004390310.1 KEGG: dac:Daci_0973 magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like YP_004390313.1 TIGRFAM: MTA/SAH nucleosidase; KEGG: dia:Dtpsy_3298 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: Nucleoside phosphorylase domain YP_004390314.1 KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004390315.1 KEGG: ctt:CtCNB1_0258 NAD(P) transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase, beta subunit YP_004390316.1 KEGG: bpt:Bpet4170 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal YP_004390317.1 KEGG: dia:Dtpsy_3302 hypothetical protein YP_004390318.1 TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; KEGG: dia:Dtpsy_3304 fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: Ketose-bisphosphate aldolase, class-II YP_004390319.1 TIGRFAM: Pyruvate kinase; KEGG: dia:Dtpsy_3305 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like YP_004390320.1 KEGG: dia:Dtpsy_3306 peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal YP_004390321.1 PFAM: Crotonase, core; KEGG: dac:Daci_0802 enoyl-CoA hydratase YP_004390322.1 KEGG: dac:Daci_0801 hypothetical protein YP_004390323.1 KEGG: xtr:100495402 caiB/baiF CoA-transferase family protein DDB_G0269880-like; PFAM: CoA-transferase family III YP_004390324.1 PFAM: Thiolase, C-terminal; KEGG: rme:Rmet_5111 thiolase YP_004390325.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: axy:AXYL_04666 hypothetical protein YP_004390326.1 KEGG: axy:AXYL_04659 extra-cytoplasmic solute receptor family protein 120 YP_004390327.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: xtr:100494792 uncharacterized HTH-type transcriptional regulator ywbI-like YP_004390328.1 PFAM: Nucleotidyl transferase; KEGG: ajs:Ajs_3958 nucleotidyl transferase YP_004390329.1 SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: dia:Dtpsy_3309 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004390330.1 SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ajs:Ajs_3960 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YP_004390331.1 PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; KEGG: dia:Dtpsy_3312 ribosomal subunit interface protein, putative YP_004390332.1 PFAM: Peptidase C26; KEGG: dia:Dtpsy_3313 peptidase C26 YP_004390333.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2148 LysR family transcriptional regulator YP_004390334.1 PFAM: Amidohydrolase 2; KEGG: pol:Bpro_2147 amidohydrolase 2 YP_004390335.1 KEGG: pol:Bpro_2146 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004390336.1 KEGG: pol:Bpro_2145 hypothetical protein YP_004390337.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_2144 carboxymuconolactone decarboxylase YP_004390338.1 KEGG: pol:Bpro_2143 hypothetical protein YP_004390339.1 KEGG: dac:Daci_2267 PepSY-associated TM helix domain-containing protein YP_004390340.1 KEGG: ctt:CtCNB1_3496 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004390341.1 KEGG: dia:Dtpsy_3314 peptidylprolyl isomerase, FKBP-type YP_004390342.1 KEGG: ctt:CtCNB1_4653 TctC YP_004390343.1 KEGG: ctt:CtCNB1_4654 hypothetical protein YP_004390344.1 PFAM: Protein of unknown function DUF1446; KEGG: ctt:CtCNB1_4655 NAD-dependent aldehyde dehydrogenase YP_004390345.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_4656 transcriptional regulator, LysR family YP_004390346.1 KEGG: aav:Aave_4607 transcription activator, effector binding; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding YP_004390347.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3318 short-chain dehydrogenase/reductase SDR YP_004390348.1 KEGG: dia:Dtpsy_3319 hypothetical protein YP_004390349.1 PFAM: DTW; KEGG: ajs:Ajs_3970 DTW domain-containing protein YP_004390350.1 KEGG: ajs:Ajs_3971 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004390351.1 KEGG: ajs:Ajs_3972 thiolase YP_004390352.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: ajs:Ajs_3973 hypothetical protein YP_004390353.1 KEGG: dia:Dtpsy_3324 hypothetical protein YP_004390354.1 KEGG: dia:Dtpsy_3325 CoA-binding domain protein; PFAM: CoA-binding; ATP-grasp fold, succinyl-CoA synthetase-type; SMART: CoA-binding YP_004390355.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: ajs:Ajs_3976 glutathione S-transferase domain-containing protein YP_004390356.1 KEGG: ajs:Ajs_3977 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004390357.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_3978 glyoxalase/bleomycin resistance protein/dioxygenase YP_004390358.1 SMART: DNA topoisomerase, type IA, DNA-binding; SWIB domain; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: ajs:Ajs_3990 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; SWIB/MDM2 domain; Toprim domain YP_004390359.1 KEGG: dia:Dtpsy_3340 nuclear protein SET; PFAM: SET domain; SMART: SET domain; Post-SET domain YP_004390360.1 KEGG: dia:Dtpsy_3341 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal YP_004390361.1 PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_3342 sporulation domain protein YP_004390362.1 KEGG: pna:Pnap_2134 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like YP_004390363.1 PFAM: MaoC-like dehydratase; KEGG: axy:AXYL_04788 MaoC-like domain-containing protein 10 YP_004390364.1 KEGG: axy:AXYL_04789 acyl dehydratase 3 YP_004390365.1 PFAM: Extracellular ligand-binding receptor; KEGG: xtr:100489190 leu/Ile/Val-binding protein homolog 6-like YP_004390366.1 KEGG: bur:Bcep18194_C7155 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004390367.1 KEGG: vei:Veis_4103 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004390368.1 KEGG: afw:Anae109_4130 hypothetical protein YP_004390369.1 KEGG: azo:azo2874 hypothetical protein; PFAM: RES; SMART: RES YP_004390370.1 PFAM: Opine dehydrogenase; Ketopantoate reductase ApbA/PanE, N-terminal; KEGG: vap:Vapar_0420 NAD/NADP octopine/nopaline dehydrogenase YP_004390371.1 KEGG: vap:Vapar_0421 hypothetical protein YP_004390372.1 KEGG: dia:Dtpsy_3348 histidine kinase; PFAM: Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004390373.1 KEGG: ajs:Ajs_3999 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004390374.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: 2-aminoethylphosphonate--pyruvate transaminase; 2-aminoethylphosphonate aminotransferase; HAMAP: 2-aminoethylphosphonate--pyruvate transaminase; KEGG: bcj:BCAL0446 2-aminoethylphosphonate--pyruvate transaminase YP_004390375.1 KEGG: reu:Reut_B5872 binding-protein dependent transport system inner membrane protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein, putative; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004390376.1 SMART: ATPase, AAA+ type, core; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2; KEGG: reu:Reut_B5873 ABC transporter related; PFAM: ABC transporter-like YP_004390377.1 KEGG: reu:Reut_B5874 extracellular solute-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: Bacterial extracellular solute-binding, family 1 YP_004390378.1 TIGRFAM: Transcription regulator, 2-aminoethylphosphonate utilisation-associated; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; KEGG: reu:Reut_B5875 GntR family transcriptional regulator; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004390379.1 KEGG: reu:Reut_B5876 type I phosphodiesterase/nucleotide pyrophosphatase; TIGRFAM: Phosphonoacetate hydrolase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase YP_004390380.1 TIGRFAM: Putative phosphonoacetaldehyde dehydrogenase; KEGG: cti:RALTA_B0682 NAD+ dependent acetaldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004390381.1 TIGRFAM: Phosphonate degradation operon associated HDIG domain protein; KEGG: vei:Veis_1186 HD phosphohydrolase-like protein YP_004390382.1 KEGG: bcm:Bcenmc03_3163 aminophosphonate oxidoreductase; TIGRFAM: Putative aminophosphonate oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004390383.1 TIGRFAM: Alanine racemase; KEGG: tmz:Tmz1t_3995 alanine racemase; PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal YP_004390384.1 HAMAP: D-amino acid dehydrogenase small subunit, DadA; KEGG: dac:Daci_3117 D-amino acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase YP_004390385.1 KEGG: vap:Vapar_3966 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type YP_004390386.1 PFAM: HTH transcriptional regulator, MarR; KEGG: ajs:Ajs_4000 MarR family transcriptional regulator YP_004390387.1 TIGRFAM: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA; KEGG: dia:Dtpsy_3351 RecA protein; SMART: ATPase, AAA+ type, core YP_004390388.1 PFAM: Regulatory protein RecX; KEGG: dia:Dtpsy_3352 regulatory protein RecX YP_004390389.1 PFAM: Protein of unknown function DUF1631; KEGG: dia:Dtpsy_3353 hypothetical protein YP_004390390.1 KEGG: dia:Dtpsy_3354 preprotein translocase subunit SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal YP_004390391.1 KEGG: dia:Dtpsy_3355 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal YP_004390392.1 KEGG: dia:Dtpsy_3356 preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC YP_004390393.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; KEGG: ajs:Ajs_4008 indolepyruvate ferredoxin oxidoreductase YP_004390394.1 KEGG: dia:Dtpsy_3359 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type YP_004390395.1 PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: dia:Dtpsy_3362 protein of unknown function DUF894 DitE YP_004390396.1 manually curated; PFAM: Lytic transglycosylase MltA; 3D; KEGG: ajs:Ajs_4013 MltA domain-containing protein; SMART: Lytic transglycosylase MltA YP_004390397.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_3364 OmpA/MotB domain protein YP_004390398.1 KEGG: ajs:Ajs_4015 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal YP_004390399.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_3366 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004390400.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dia:Dtpsy_3367 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004390401.1 TIGRFAM: Conserved hypothetical protein CHP02099; KEGG: dia:Dtpsy_3368 hypothetical protein YP_004390402.1 KEGG: dia:Dtpsy_3369 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase, repeated domain; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YP_004390403.1 KEGG: dia:Dtpsy_3372 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004390404.1 PFAM: Acriflavin resistance protein; KEGG: ajs:Ajs_4023 acriflavin resistance protein YP_004390405.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_3375 glutathione S-transferase domain protein YP_004390406.1 TIGRFAM: Adenylosuccinate lyase; KEGG: dia:Dtpsy_3376 adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal/plant YP_004390407.1 PFAM: YaeQ; KEGG: dia:Dtpsy_3377 YaeQ family protein YP_004390408.1 KEGG: dia:Dtpsy_3378 hypothetical protein YP_004390409.1 PFAM: Protein of unknown function DUF1289; KEGG: dia:Dtpsy_3379 protein of unknown function DUF1289 YP_004390410.1 KEGG: ajs:Ajs_4030 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC YP_004390411.1 KEGG: ajs:Ajs_4031 hypothetical protein YP_004390412.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rme:Rmet_4070 LysR family transcriptional regulator YP_004390413.1 PFAM: Membrane protein of unknown function; KEGG: dia:Dtpsy_3382 membrane protein of unknown function YP_004390414.1 PFAM: Peptidase M48; KEGG: dia:Dtpsy_3383 peptidase M48 Ste24p YP_004390415.1 KEGG: ajs:Ajs_4034 GTP cyclohydrolase subunit MoaC; TIGRFAM: Molybdenum cofactor biosynthesis C; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain YP_004390416.1 KEGG: nla:NLA_7720 hypothetical protein YP_004390417.1 KEGG: dia:Dtpsy_3386 FimB YP_004390418.1 manually curated; KEGG: pau:PA14_58730 type IV pilin structural subunit YP_004390419.1 KEGG: pol:Bpro_4676 cyclic-AMP phosphodiesterase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like YP_004390420.1 KEGG: ajs:Ajs_4043 FHA domain-containing protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain YP_004390421.1 KEGG: ajs:Ajs_4044 protein phosphatase 2C domain-containing protein; PFAM: Protein phosphatase 2C, N-terminal; SMART: Protein phosphatase 2C-like YP_004390422.1 KEGG: ajs:Ajs_4045 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC YP_004390423.1 SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: dia:Dtpsy_3391 succinyl-CoA synthetase subunit alpha; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase YP_004390424.1 TIGRFAM: Succinyl-CoA synthetase, beta subunit; KEGG: dia:Dtpsy_3392 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase YP_004390425.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 2; KEGG: dia:Dtpsy_3393 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding YP_004390426.1 KEGG: ajs:Ajs_4049 fis family transcriptional regulator; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A YP_004390427.1 KEGG: ajs:Ajs_4050 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004390428.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: dia:Dtpsy_3396 peptide deformylase; PFAM: Formylmethionine deformylase YP_004390429.1 KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane YP_004390430.1 PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: ajs:Ajs_4053 methionyl-tRNA formyltransferase YP_004390431.1 PFAM: Branched-chain amino acid transport, permease; KEGG: ajs:Ajs_4054 AzlC family protein YP_004390432.1 PFAM: Branched-chain amino acid transport, AzlD; KEGG: dia:Dtpsy_3400 branched-chain amino acid transport YP_004390433.1 HAMAP: Phosphoglycerate kinase; KEGG: dia:Dtpsy_3401 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_004390434.1 KEGG: dac:Daci_0827 hypothetical protein YP_004390435.1 KEGG: dac:Daci_0826 hypothetical protein YP_004390436.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_3402 protein of unknown function DUF6 transmembrane YP_004390437.1 SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase, type 2; KEGG: dia:Dtpsy_3403 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain YP_004390438.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_3404 transcriptional regulator, LysR family YP_004390439.1 KEGG: ajs:Ajs_4060 hypothetical protein YP_004390440.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: dia:Dtpsy_3406 hypothetical protein YP_004390441.1 KEGG: aav:Aave_4703 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004390442.1 TIGRFAM: Excinuclease ABC, A subunit; HAMAP: Excinuclease ABC, A subunit; KEGG: dia:Dtpsy_3409 excinuclease ABC, A subunit; PFAM: ABC transporter-like YP_004390443.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_4065 major facilitator superfamily transporter YP_004390444.1 KEGG: ajs:Ajs_4066 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004390445.1 KEGG: ajs:Ajs_4067 L-lactate transport; TIGRFAM: L-lactate permease; PFAM: L-lactate permease YP_004390446.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: dia:Dtpsy_3413 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA-specific 2-thiouridylase YP_004390447.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_0298 LysR family transcriptional regulator YP_004390448.1 PFAM: PrpF protein; KEGG: vei:Veis_0299 hypothetical protein YP_004390449.1 KEGG: vei:Veis_0300 hypothetical protein YP_004390450.1 PFAM: Porin, Gram-negative type; KEGG: vei:Veis_0301 porin YP_004390451.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_3816 LysR family transcriptional regulator YP_004390452.1 KEGG: dia:Dtpsy_3415 tricarballylate dehydrogenase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobZ, precorrin 3B synthase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal YP_004390453.1 TIGRFAM: Citrate utilization protein B; KEGG: ajs:Ajs_4071 CitB domain-containing protein YP_004390454.1 KEGG: dia:Dtpsy_3417 hypothetical protein YP_004390455.1 KEGG: dia:Dtpsy_3418 sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004390456.1 KEGG: dia:Dtpsy_3419 propionyl-CoA carboxylase; PFAM: Carboxyl transferase YP_004390457.1 KEGG: dac:Daci_1098 hypothetical protein YP_004390458.1 KEGG: dia:Dtpsy_3421 CoA-binding domain protein; PFAM: CoA-binding; SMART: CoA-binding YP_004390459.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; KEGG: dac:Daci_1096 carbamoyl-phosphate synthase subunit L; SMART: Biotin carboxylase, C-terminal YP_004390460.1 PFAM: Biotin/lipoyl attachment; KEGG: dia:Dtpsy_3423 biotin/lipoyl attachment domain-containing protein YP_004390461.1 KEGG: dia:Dtpsy_3424 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004390462.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_3425 NUDIX hydrolase YP_004390463.1 KEGG: dia:Dtpsy_3426 hypothetical protein YP_004390464.1 KEGG: ajs:Ajs_4075 TonB-dependent copper receptor; TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004390465.1 KEGG: met:M446_5737 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004390466.1 KEGG: bxe:Bxe_C0866 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004390467.1 KEGG: aav:Aave_3937 hypothetical protein YP_004390468.1 KEGG: rpf:Rpic12D_1541 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III YP_004390469.1 KEGG: pzu:PHZ_c2530 hypothetical protein YP_004390470.1 KEGG: gka:GK2759 acetyl-CoA synthetase (acetate-CoA ligase); PFAM: AMP-dependent synthetase/ligase YP_004390471.1 TIGRFAM: Lumazine-binding protein; KEGG: ajs:Ajs_4077 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_004390472.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: axy:AXYL_05416 LysE type translocator family protein 14 YP_004390473.1 KEGG: ajs:Ajs_4082 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004390474.1 KEGG: dia:Dtpsy_3431 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004390475.1 PFAM: Peptidase M4, propeptide, PepSY; KEGG: dia:Dtpsy_3432 propeptide PepSY amd peptidase M4 YP_004390476.1 KEGG: axy:AXYL_05206 hypothetical protein YP_004390477.1 PFAM: Flavoprotein transmembrane component; FAD-binding 8; KEGG: dia:Dtpsy_3433 ferric reductase domain protein transmembrane component YP_004390478.1 PFAM: Cytochrome b/b6, N-terminal; KEGG: pag:PLES_43981 cytochrome b561 YP_004390479.1 KEGG: dia:Dtpsy_3434 hypothetical protein YP_004390480.1 KEGG: ajs:Ajs_4087 hypothetical protein YP_004390481.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Flavodoxin/nitric oxide synthase; PepSY-associated TM helix; Oxidoreductase, FAD-binding domain; KEGG: ajs:Ajs_4088 oxidoreductase FAD/NAD(P)-binding subunit YP_004390482.1 PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: dia:Dtpsy_3437 ApbE family lipoprotein YP_004390483.1 KEGG: ajs:Ajs_4090 hypothetical protein YP_004390484.1 KEGG: ajs:Ajs_4091 hypothetical protein YP_004390485.1 SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_3444 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004390487.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bpt:Bpet0267 hypothetical protein YP_004390488.1 KEGG: bpt:Bpetpseudo_01 hypothetical protein YP_004390489.1 KEGG: bpt:Bpet0266 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004390490.1 KEGG: bpt:Bpet0265 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004390491.1 KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III YP_004390492.1 TIGRFAM: Quinone oxidoreductase putative, YhdH/YhfP; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: bpt:Bpet0263 alcohol dehydrogenase III; SMART: Polyketide synthase, enoylreductase YP_004390493.1 KEGG: sth:STH2463 acyl-CoA dehydrogenase, short-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004390494.1 KEGG: bpt:Bpetpseudo_01 hypothetical protein YP_004390495.1 KEGG: bpt:Bpet0265 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal YP_004390496.1 KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III YP_004390497.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_4196 LysR family transcriptional regulator YP_004390498.1 KEGG: vap:Vapar_1641 hypothetical protein YP_004390499.1 TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: vap:Vapar_1640 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase YP_004390501.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: ajs:Ajs_4093 twin-arginine translocation pathway signal YP_004390502.1 HAMAP: Spermine synthase; KEGG: dia:Dtpsy_3446 spermidine synthase; PFAM: Spermine synthase YP_004390503.1 PFAM: Protein of unknown function DUF350; KEGG: dia:Dtpsy_3447 protein of unknown function DUF350 YP_004390504.1 KEGG: dia:Dtpsy_3448 putative transmembrane protein YP_004390505.1 PFAM: Band 7 protein; KEGG: ajs:Ajs_4099 putative transmembrane protein YP_004390506.1 PFAM: Protein of unknown function DUF2061, membrane; KEGG: dia:Dtpsy_3450 hypothetical protein YP_004390507.1 PFAM: Flagellar basal body rod protein, N-terminal; Domain of unknown function DUF1078, C-terminal; KEGG: dia:Dtpsy_3453 flagellar basal body rod protein YP_004390508.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_3454 transcriptional regulator, LysR family YP_004390509.1 KEGG: xtr:100492879 omega-amino acid--pyruvate aminotransferase-like; PFAM: Aminotransferase class-III YP_004390510.1 TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: dia:Dtpsy_3456 methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004390511.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; MASE2; KEGG: aav:Aave_4748 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004390512.1 KEGG: dia:Dtpsy_3457 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004390513.1 KEGG: dia:Dtpsy_3458 extracellular ligand-binding receptor YP_004390514.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_3459 inner-membrane translocator YP_004390515.1 PFAM: ABC transporter permease; KEGG: dac:Daci_6025 inner-membrane translocator YP_004390516.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_3461 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004390517.1 KEGG: dac:Daci_6027 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004390518.1 TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: dia:Dtpsy_3463 amidase, hydantoinase/carbamoylase family; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004390519.1 PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: dia:Dtpsy_3464 microcystin LR degradation protein MlrC-like protein YP_004390520.1 KEGG: dia:Dtpsy_3465 malic enzyme; PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding YP_004390521.1 PFAM: Guanine-specific ribonuclease N1/T1; KEGG: dia:Dtpsy_3466 guanine-specific ribonuclease N1 and T1 YP_004390522.1 PFAM: Barstar (barnase inhibitor); KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor) YP_004390523.1 TIGRFAM: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase; KEGG: dia:Dtpsy_3468 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal YP_004390524.1 KEGG: dia:Dtpsy_3469 SurA domain protein; HAMAP: Peptidyl-prolyl isomerase SurA; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type YP_004390525.1 KEGG: dia:Dtpsy_3470 organic solvent tolerance protein; HAMAP: Lipopolysccharide assembly, LptD; PFAM: Organic solvent tolerance protein, C-terminal YP_004390526.1 PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_4113 aminoglycoside phosphotransferase YP_004390527.1 KEGG: dia:Dtpsy_3472 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E YP_004390528.1 KEGG: dia:Dtpsy_3473 hypothetical protein YP_004390529.1 KEGG: ajs:Ajs_4116 hypothetical protein YP_004390530.1 PFAM: RecF/RecN/SMC; KEGG: dia:Dtpsy_3475 SMC domain protein YP_004390531.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; KEGG: dia:Dtpsy_3479 peptidase M20 YP_004390532.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_3480 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004390533.1 KEGG: dia:Dtpsy_3482 methionine biosynthesis protein MetW; TIGRFAM: Methionine biosynthesis MetW; PFAM: Methionine biosynthesis MetW YP_004390534.1 TIGRFAM: Homoserine acetyltransferase; KEGG: ajs:Ajs_4125 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1 YP_004390535.1 PFAM: Uncharacterised protein family UPF0016; KEGG: dia:Dtpsy_3484 protein of unknown function UPF0016 YP_004390536.1 KEGG: dia:Dtpsy_3485 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain YP_004390537.1 KEGG: ajs:Ajs_4128 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain YP_004390538.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_4129 short chain dehydrogenase YP_004390539.1 PFAM: Lipopolysccharide assembly, LptC-related; KEGG: dia:Dtpsy_3488 protein of unknown function DUF1239 YP_004390540.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; KEGG: dia:Dtpsy_3489 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; PFAM: HAD superfamily hydrolase-like, type 3 YP_004390541.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: KpsF/GutQ; KEGG: ajs:Ajs_4132 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core YP_004390542.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: ajs:Ajs_4133 potassium efflux system protein YP_004390543.1 TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: dia:Dtpsy_3492 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004390544.1 KEGG: ajs:Ajs_4136 hypothetical protein YP_004390545.1 KEGG: dia:Dtpsy_3494 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain YP_004390546.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: ajs:Ajs_4138 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related YP_004390547.1 KEGG: aav:Aave_1937 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004390548.1 KEGG: vap:Vapar_1545 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004390549.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_1935 LysR family transcriptional regulator YP_004390550.1 KEGG: aav:Aave_1663 aspartate racemase; TIGRFAM: Aspartate racemase; PFAM: Asp/Glu/hydantoin racemase YP_004390551.1 PFAM: Peptidase M55, D-aminopeptidase; KEGG: aav:Aave_1662 D-aminopeptidase DppA YP_004390552.1 PFAM: Peptidase S58, DmpA; KEGG: aav:Aave_1661 aminopeptidase DmpA YP_004390553.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1660 binding-protein-dependent transport systems inner membrane component YP_004390554.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1659 binding-protein-dependent transport systems inner membrane component YP_004390555.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: aav:Aave_1658 extracellular solute-binding protein YP_004390556.1 TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: aav:Aave_1657 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core YP_004390557.1 KEGG: aav:Aave_1656 asparaginase; PFAM: Peptidase T2, asparaginase 2 YP_004390558.1 PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: aav:Aave_1655 RpiR family transcriptional regulator YP_004390559.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ajs:Ajs_4139 extracellular solute-binding protein YP_004390560.1 KEGG: dia:Dtpsy_3542 YidC translocase/secretase; TIGRFAM: Membrane insertion protein, OxaA/YidC, bacterial; Membrane insertion protein, OxaA/YidC; PFAM: Membrane insertion protein, OxaA/YidC YP_004390561.1 KEGG: ajs:Ajs_4141 hypothetical protein; TIGRFAM: Protein of unknown function DUF37; PFAM: Protein of unknown function DUF37 YP_004390562.1 PFAM: Ribonuclease P; KEGG: dia:Dtpsy_3544 hypothetical protein YP_004390563.1 TIGRFAM: Ribosomal protein L34; HAMAP: Ribosomal protein L34; KEGG: vei:Veis_5015 50S ribosomal protein L34; PFAM: Ribosomal protein L34 YP_004390564.1 KEGG: ajs:Ajs_4195 hypothetical protein YP_004390565.1 PFAM: Type IV secretion system, TraD, DNA-binding domain; Ti-type conjugative transfer system, TraG-like; KEGG: ajs:Ajs_4194 hypothetical protein YP_004390566.1 KEGG: ajs:Ajs_4193 putative thiol:disulfide interchange transmembrane protein YP_004390567.1 KEGG: ajs:Ajs_4192 TrwC protein; TIGRFAM: Conjugative relaxase, N-terminal; PFAM: TrwC relaxase YP_004390569.1 PFAM: YheO-like; KEGG: ajs:Ajs_4191 hypothetical protein YP_004390570.1 PFAM: Protein of unknown function DUF1805; KEGG: ajs:Ajs_4190 hypothetical protein YP_004390571.1 KEGG: ajs:Ajs_4189 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004390572.1 KEGG: ajs:Ajs_4188 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal YP_004390573.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_4187 lytic transglycosylase, catalytic YP_004390574.1 KEGG: ajs:Ajs_4186 hypothetical protein YP_004390575.1 PFAM: Conjugal transfer,TrbC; KEGG: ajs:Ajs_4185 hypothetical protein YP_004390576.1 KEGG: ajs:Ajs_4184 hypothetical protein; TIGRFAM: Type IV conjugative transfer system, protein TraL; PFAM: Type IV conjugative transfer system, protein TraL YP_004390577.1 KEGG: ajs:Ajs_4183 hypothetical protein YP_004390578.1 KEGG: ajs:Ajs_4182 hypothetical protein YP_004390579.1 PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: ajs:Ajs_4181 TraB pilus assembly family protein YP_004390580.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_4180 protein-disulfide isomerase YP_004390582.1 KEGG: ajs:Ajs_4179 membrane lipoprotein lipid attachment site; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV YP_004390583.1 TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_4178 hypothetical protein YP_004390584.1 KEGG: ajs:Ajs_4177 hypothetical protein YP_004390585.1 PFAM: Peptidase S26, conserved region; KEGG: ajs:Ajs_4176 hypothetical protein YP_004390586.1 TIGRFAM: Type-F conjugative transfer system protein TraW; KEGG: ajs:Ajs_4175 hypothetical protein YP_004390587.1 PFAM: TraU; KEGG: ajs:Ajs_4174 TraU family protein YP_004390588.1 KEGG: ajs:Ajs_4173 hypothetical protein; TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC, subgroup; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC YP_004390589.1 KEGG: ajs:Ajs_4172 hypothetical protein YP_004390590.1 PFAM: Mating pair stabilisation TraN; KEGG: ajs:Ajs_4171 conjugal transfer mating pair stabilization protein TraN YP_004390591.1 KEGG: ajs:Ajs_4170 hypothetical protein YP_004390592.1 KEGG: ajs:Ajs_4169 hypothetical protein YP_004390593.1 PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_4168 TraH family protein YP_004390594.1 PFAM: TraG-like, N-terminal; KEGG: ajs:Ajs_4167 TraG domain-containing protein YP_004390595.1 KEGG: ajs:Ajs_4166 hypothetical protein YP_004390596.1 PFAM: Peptidase M48; KEGG: ajs:Ajs_4164 peptidase M48, Ste24p YP_004390597.1 KEGG: ajs:Ajs_4163 hypothetical protein YP_004390598.1 KEGG: ajs:Ajs_4247 hypothetical protein YP_004390599.1 KEGG: ajs:Ajs_4246 hypothetical protein YP_004390600.1 KEGG: ajs:Ajs_4245 hypothetical protein YP_004390601.1 KEGG: ajs:Ajs_4244 hypothetical protein YP_004390602.1 KEGG: ajs:Ajs_4243 hypothetical protein YP_004390603.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: ajs:Ajs_4242 filamentation induced by cAMP protein Fic YP_004390604.1 KEGG: ajs:Ajs_4241 hypothetical protein YP_004390605.1 KEGG: ajs:Ajs_4240 hypothetical protein YP_004390606.1 PFAM: Zeta toxin; KEGG: ajs:Ajs_4239 zeta toxin family protein YP_004390607.1 PFAM: Protein of unknown function DUF1173; KEGG: ajs:Ajs_4238 hypothetical protein YP_004390608.1 KEGG: ajs:Ajs_4237 hypothetical protein YP_004390609.1 KEGG: ajs:Ajs_4236 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004390610.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: ajs:Ajs_4235 OmpA/MotB domain-containing protein YP_004390611.1 KEGG: azo:azo0081 hypothetical protein YP_004390612.1 KEGG: ajs:Ajs_4232 hypothetical protein YP_004390613.1 PFAM: Protein of unknown function DUF1294; KEGG: dac:Daci_5254 cold-shock DNA-binding domain-containing protein YP_004390614.1 KEGG: ajs:Ajs_4231 aspartyl protease-like protein YP_004390615.1 KEGG: ajs:Ajs_4230 metal dependent phosphohydrolase YP_004390616.1 KEGG: gsu:GSU2163 hypothetical protein YP_004390617.1 KEGG: ajs:Ajs_4227 hypothetical protein YP_004390618.1 KEGG: eba:ebA4367 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Toprim domain; DNA primase, DnaB-helicase binding domain; SMART: Toprim domain YP_004390619.1 KEGG: ajs:Ajs_4225 hypothetical protein YP_004390620.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ajs:Ajs_4224 cobyrinic acid a,c-diamide synthase YP_004390621.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_4223 ParB-like partition proteins; SMART: ParB-like nuclease YP_004390622.1 KEGG: ajs:Ajs_4222 hypothetical protein YP_004390623.1 KEGG: ajs:Ajs_4221 hypothetical protein; TIGRFAM: Addiction module killer protein, HI1419; PFAM: Protein of unknown function DUF891 YP_004390624.1 TIGRFAM: Addiction module antidote protein, HI1420; KEGG: vei:Veis_3350 putative transcriptional regulator YP_004390625.1 PFAM: Replication initiator protein A; KEGG: ajs:Ajs_4219 hypothetical protein YP_004390626.1 KEGG: ajs:Ajs_4218 hypothetical protein YP_004390627.1 KEGG: ajs:Ajs_4216 hypothetical protein YP_004390628.1 KEGG: ajs:Ajs_4215 hypothetical protein YP_004390629.1 PFAM: C-5 cytosine methyltransferase; KEGG: ajs:Ajs_4214 C-5 cytosine-specific DNA methylase YP_004390630.1 SMART: Phospholipase D/Transphosphatidylase; KEGG: ajs:Ajs_4213 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme YP_004390631.1 KEGG: dac:Daci_0165 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004390632.1 KEGG: kpe:KPK_1162 RND family multidrug efflux permease protein OqxB; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004390633.1 KEGG: xac:XAC1482 RND multidrug efflux membrane fusion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004390634.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3783 TetR family transcriptional regulator YP_004390635.1 KEGG: ajs:Ajs_4212 hypothetical protein YP_004390636.1 KEGG: ajs:Ajs_4211 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004390638.1 PFAM: Protein of unknown function DUF932; KEGG: ajs:Ajs_4210 hypothetical protein YP_004390639.1 KEGG: ajs:Ajs_4208 hypothetical protein YP_004390640.1 KEGG: ajs:Ajs_4207 hypothetical protein YP_004390641.1 KEGG: ajs:Ajs_4206 methyltransferase type 11; manually curated; PFAM: Methyltransferase type 11 YP_004390642.1 KEGG: ajs:Ajs_4205 hypothetical protein YP_004390643.1 KEGG: ajs:Ajs_4204 hypothetical protein YP_004390644.1 KEGG: ajs:Ajs_4203 hypothetical protein YP_004390645.1 KEGG: ajs:Ajs_4202 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758 YP_004390646.1 KEGG: ajs:Ajs_4201 hypothetical protein YP_004390647.1 KEGG: ajs:Ajs_4200 hypothetical protein YP_004390648.1 KEGG: ajs:Ajs_4199 hypothetical protein YP_004390649.1 KEGG: ajs:Ajs_4198 resolvase domain-containing protein; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal YP_004390650.1 KEGG: ajs:Ajs_4197 hypothetical protein YP_004390652.1 KEGG: ajs:Ajs_4196 hypothetical protein