-- dump date 20140618_193823 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_004385957.1 330822654 10485827 104..1525 1 NC_015422.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: dia:Dtpsy_0001 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; chromosomal replication initiator protein dnaA 1525 10485827 Alide2_0001 Alicycliphilus denitrificans K601 chromosomal replication initiator protein dnaA YP_004385957.1 104 D 596154 CDS YP_004385958.1 330822655 10481018 1652..2758 1 NC_015422.1 SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dia:Dtpsy_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain, C-terminal; DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, central; DNA polymerase III subunit beta 2758 10481018 Alide2_0002 Alicycliphilus denitrificans K601 DNA polymerase III subunit beta YP_004385958.1 1652 D 596154 CDS YP_004385959.1 330822656 10481019 2877..5459 1 NC_015422.1 TIGRFAM: DNA gyrase, subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: dia:Dtpsy_0003 DNA gyrase, B subunit; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; DNA gyrase subunit B 5459 10481019 Alide2_0003 Alicycliphilus denitrificans K601 DNA gyrase subunit B YP_004385959.1 2877 D 596154 CDS YP_004385960.1 330822657 10481020 5524..6156 1 NC_015422.1 hypothetical protein 6156 10481020 Alide2_0004 Alicycliphilus denitrificans K601 hypothetical protein YP_004385960.1 5524 D 596154 CDS YP_004385961.1 330822658 10481021 complement(6147..7277) 1 NC_015422.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: sbl:Sbal_4355 XRE family transcriptional regulator; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 7277 10481021 Alide2_0005 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004385961.1 6147 R 596154 CDS YP_004385962.1 330822659 10481022 complement(7771..8685) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 8685 10481022 Alide2_0006 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004385962.1 7771 R 596154 CDS YP_004385963.1 330822660 10481023 complement(8682..9005) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 9005 10481023 Alide2_0007 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004385963.1 8682 R 596154 CDS YP_004385964.1 330822661 10481024 complement(9272..9736) 1 NC_015422.1 KEGG: cyp:PCC8801_1290 hypothetical protein; hypothetical protein 9736 10481024 Alide2_0008 Alicycliphilus denitrificans K601 hypothetical protein YP_004385964.1 9272 R 596154 CDS YP_004385965.1 330822662 10481025 10466..10879 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_0006 protein of unknown function UPF0153; hypothetical protein 10879 10481025 Alide2_0009 Alicycliphilus denitrificans K601 hypothetical protein YP_004385965.1 10466 D 596154 CDS YP_004385966.1 330822663 10481026 complement(10904..12097) 1 NC_015422.1 KEGG: reh:H16_A2137 acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; formyl-CoA transferase 12097 10481026 Alide2_0010 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004385966.1 10904 R 596154 CDS YP_004385967.1 330822664 10481027 complement(12107..12964) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: reh:H16_A2138 enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase/isomerase 12964 10481027 Alide2_0011 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004385967.1 12107 R 596154 CDS YP_004385968.1 330822665 10481028 13018..13860 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reh:H16_A2139 LysR family transcriptional regulator; LysR family transcriptional regulator 13860 10481028 Alide2_0012 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004385968.1 13018 D 596154 CDS YP_004385969.1 330822666 10481029 complement(13857..14879) 1 NC_015422.1 KEGG: reh:H16_A2140 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor 14879 10481029 Alide2_0013 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor YP_004385969.1 13857 R 596154 CDS YP_004385970.1 330822667 10481030 complement(14914..16686) 1 NC_015422.1 PFAM: Protein of unknown function DUF1446; KEGG: reh:H16_A2141 hypothetical protein; hypothetical protein 16686 10481030 Alide2_0014 Alicycliphilus denitrificans K601 hypothetical protein YP_004385970.1 14914 R 596154 CDS YP_004385971.1 330822668 10481031 complement(16683..18701) 1 NC_015422.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: xtr:100489724 acetyl-/propionyl-coenzyme A carboxylase alpha chain-like; SMART: Biotin carboxylase, C-terminal; methylcrotonoyl-CoA carboxylase 18701 10481031 Alide2_0015 Alicycliphilus denitrificans K601 methylcrotonoyl-CoA carboxylase YP_004385971.1 16683 R 596154 CDS YP_004385972.1 330822669 10481032 complement(18718..19881) 1 NC_015422.1 KEGG: reh:H16_A2143 acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; isovaleryl-CoA dehydrogenase 19881 10481032 Alide2_0016 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004385972.1 18718 R 596154 CDS YP_004385973.1 330822670 10481033 complement(20013..21623) 1 NC_015422.1 KEGG: reh:H16_A2144 propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase; methylcrotonoyl-CoA carboxylase 21623 10481033 Alide2_0017 Alicycliphilus denitrificans K601 methylcrotonoyl-CoA carboxylase YP_004385973.1 20013 R 596154 CDS YP_004385974.1 330822671 10481034 complement(21735..22040) 1 NC_015422.1 PFAM: Acylphosphatase-like; KEGG: ajs:Ajs_4152 acylphosphatase; acylphosphatase 22040 10481034 Alide2_0018 Alicycliphilus denitrificans K601 acylphosphatase YP_004385974.1 21735 R 596154 CDS YP_004385975.1 330822672 10481035 22068..22352 1 NC_015422.1 PFAM: 4Fe-4S binding domain; KEGG: ajs:Ajs_4153 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 22352 10481035 Alide2_0019 Alicycliphilus denitrificans K601 4Fe-4S ferredoxin YP_004385975.1 22068 D 596154 CDS YP_004385976.1 330822673 10481036 22670..24055 1 NC_015422.1 PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; KEGG: ajs:Ajs_4155 homoserine dehydrogenase; homoserine dehydrogenase 24055 10481036 Alide2_0020 Alicycliphilus denitrificans K601 homoserine dehydrogenase YP_004385976.1 22670 D 596154 CDS YP_004385977.1 330822674 10481037 24215..26389 1 NC_015422.1 KEGG: ajs:Ajs_4158 ATP-dependent DNA helicase DinG; PFAM: DEAD2; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; DEAD/DEAH box helicase 26389 10481037 Alide2_0021 Alicycliphilus denitrificans K601 DEAD/DEAH box helicase YP_004385977.1 24215 D 596154 CDS YP_004385978.1 330822675 10481038 26402..27031 1 NC_015422.1 PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: ajs:Ajs_4160 DNA polymerase III, epsilon subunit; SMART: Exonuclease; DNA-directed DNA polymerase 27031 10481038 Alide2_0022 Alicycliphilus denitrificans K601 DNA-directed DNA polymerase YP_004385978.1 26402 D 596154 CDS YP_004385979.1 330822676 10481039 27098..27577 1 NC_015422.1 PFAM: NLP/P60; KEGG: ajs:Ajs_0001 NLP/P60 protein; NLP/P60 protein 27577 10481039 Alide2_0023 Alicycliphilus denitrificans K601 NLP/P60 protein YP_004385979.1 27098 D 596154 CDS YP_004385980.1 330822677 10481040 27616..28719 1 NC_015422.1 TIGRFAM: DHAP synthase, class 1; KEGG: ajs:Ajs_0002 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 28719 10481040 Alide2_0024 Alicycliphilus denitrificans K601 phospho-2-dehydro-3-deoxyheptonate aldolase YP_004385980.1 27616 D 596154 CDS YP_004385981.1 330822678 10481041 29312..32932 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold; Diguanylate cyclase, predicted; GAF; KEGG: dia:Dtpsy_0021 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; GAF; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 32932 10481041 Alide2_0025 Alicycliphilus denitrificans K601 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_004385981.1 29312 D 596154 CDS YP_004385982.1 330822679 10481042 complement(32999..33802) 1 NC_015422.1 KEGG: dia:Dtpsy_0022 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 33802 10481042 Alide2_0026 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004385982.1 32999 R 596154 CDS YP_004385983.1 330822680 10481043 33989..34960 1 NC_015422.1 KEGG: ajs:Ajs_0005 hypothetical protein; hypothetical protein 34960 10481043 Alide2_0027 Alicycliphilus denitrificans K601 hypothetical protein YP_004385983.1 33989 D 596154 CDS YP_004385984.1 330822681 10481044 complement(34971..35999) 1 NC_015422.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: axy:AXYL_04409 acyl-CoA dehydrogenase, C-terminal domain-containing protein 1; acyl-CoA dehydrogenase domain-containing protein 35999 10481044 Alide2_0028 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004385984.1 34971 R 596154 CDS YP_004385985.1 330822682 10481045 complement(36004..37191) 1 NC_015422.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: axy:AXYL_04410 acyl-CoA dehydrogenase, middle domain-containing protein 12; acyl-CoA dehydrogenase domain-containing protein 37191 10481045 Alide2_0029 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004385985.1 36004 R 596154 CDS YP_004385986.1 330822683 10481046 complement(37238..38203) 1 NC_015422.1 KEGG: axy:AXYL_04411 extra-cytoplasmic solute receptor family protein 110; extra-cytoplasmic solute receptor family protein 38203 10481046 Alide2_0030 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor family protein YP_004385986.1 37238 R 596154 CDS YP_004385987.1 330822684 10481047 complement(38241..40334) 1 NC_015422.1 KEGG: rme:Rmet_0842 CoA-binding; PFAM: CoA-binding; ATP-grasp fold, succinyl-CoA synthetase-type; SMART: CoA-binding; CoA-binding domain-containing protein 40334 10481047 Alide2_0031 Alicycliphilus denitrificans K601 CoA-binding domain-containing protein YP_004385987.1 38241 R 596154 CDS YP_004385988.1 330822685 10481048 complement(40349..41149) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: rme:Rmet_0841 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 41149 10481048 Alide2_0032 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004385988.1 40349 R 596154 CDS YP_004385989.1 330822686 10481049 41244..42008 1 NC_015422.1 KEGG: bpt:Bpet3285 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 42008 10481049 Alide2_0033 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004385989.1 41244 D 596154 CDS YP_004385990.1 330822687 10481050 complement(42268..42873) 1 NC_015422.1 PFAM: Lipid A 3-O-deacylase-related; KEGG: dia:Dtpsy_0024 hypothetical protein; lipid A 3-O-deacylase-like protein 42873 10481050 Alide2_0034 Alicycliphilus denitrificans K601 lipid A 3-O-deacylase-like protein YP_004385990.1 42268 R 596154 CDS YP_004385991.1 330822688 10481051 complement(42988..43581) 1 NC_015422.1 PFAM: Domain of unknown function DUF1520; KEGG: ajs:Ajs_0007 hypothetical protein; hypothetical protein 43581 10481051 Alide2_0035 Alicycliphilus denitrificans K601 hypothetical protein YP_004385991.1 42988 R 596154 CDS YP_004385992.1 330822689 10481052 43798..44739 1 NC_015422.1 PFAM: Putative exonuclease, RdgC; KEGG: ajs:Ajs_0008 recombination associated protein; exonuclease RdgC 44739 10481052 Alide2_0036 Alicycliphilus denitrificans K601 exonuclease RdgC YP_004385992.1 43798 D 596154 CDS YP_004385993.1 330822690 10481053 44759..46012 1 NC_015422.1 PFAM: Nucleoside recognition; KEGG: ajs:Ajs_0012 nucleoside recognition domain-containing protein; nucleoside recognition domain-containing protein 46012 10481053 Alide2_0037 Alicycliphilus denitrificans K601 nucleoside recognition domain-containing protein YP_004385993.1 44759 D 596154 CDS YP_004385994.1 330822691 10481054 46499..46750 1 NC_015422.1 KEGG: dia:Dtpsy_0031 hypothetical protein; hypothetical protein 46750 10481054 Alide2_0038 Alicycliphilus denitrificans K601 hypothetical protein YP_004385994.1 46499 D 596154 CDS YP_004385995.1 330822692 10481055 complement(46719..48596) 1 NC_015422.1 KEGG: blt:Balat_0053 beta-galactosidase I; hypothetical protein 48596 10481055 Alide2_0039 Alicycliphilus denitrificans K601 hypothetical protein YP_004385995.1 46719 R 596154 CDS YP_004385996.1 330822693 10481056 complement(48694..49131) 1 NC_015422.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: dia:Dtpsy_0035 transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 49131 10481056 Alide2_0040 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004385996.1 48694 R 596154 CDS YP_004385997.1 330822694 10481057 complement(49128..49325) 1 NC_015422.1 PFAM: Heavy metal transport/detoxification protein; KEGG: dia:Dtpsy_0036 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 49325 10481057 Alide2_0041 Alicycliphilus denitrificans K601 heavy metal transport/detoxification protein YP_004385997.1 49128 R 596154 CDS YP_004385998.1 330822695 10481058 49495..51726 1 NC_015422.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_0037 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 51726 10481058 Alide2_0042 Alicycliphilus denitrificans K601 heavy metal translocating P-type ATPase YP_004385998.1 49495 D 596154 CDS YP_004385999.1 330822696 10481059 51853..53502 1 NC_015422.1 KEGG: ajs:Ajs_0020 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 53502 10481059 Alide2_0043 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004385999.1 51853 D 596154 CDS YP_004386000.1 330822697 10481060 complement(53658..56753) 1 NC_015422.1 KEGG: aav:Aave_0038 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 56753 10481060 Alide2_0044 Alicycliphilus denitrificans K601 CzcA family heavy metal efflux pump YP_004386000.1 53658 R 596154 CDS YP_004386001.1 330822698 10481061 complement(56750..57991) 1 NC_015422.1 TIGRFAM: Secretion protein HlyD; KEGG: aav:Aave_0039 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 57991 10481061 Alide2_0045 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004386001.1 56750 R 596154 CDS YP_004386002.1 330822699 10481062 complement(58023..59264) 1 NC_015422.1 PFAM: Outer membrane efflux protein; KEGG: xtr:100485479 hypothetical protein LOC100485479; outer membrane efflux protein 59264 10481062 Alide2_0046 Alicycliphilus denitrificans K601 outer membrane efflux protein YP_004386002.1 58023 R 596154 CDS YP_004386003.1 330822700 10481063 59397..60122 1 NC_015422.1 KEGG: aav:Aave_0041 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 60122 10481063 Alide2_0047 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004386003.1 59397 D 596154 CDS YP_004386004.1 330822701 10481064 60119..61546 1 NC_015422.1 KEGG: aav:Aave_0042 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 61546 10481064 Alide2_0048 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004386004.1 60119 D 596154 CDS YP_004386005.1 330822702 10481065 complement(61572..62687) 1 NC_015422.1 KEGG: dia:Dtpsy_0040 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; 12-oxophytodienoate reductase 62687 10481065 Alide2_0049 Alicycliphilus denitrificans K601 12-oxophytodienoate reductase YP_004386005.1 61572 R 596154 CDS YP_004386006.1 330822703 10481066 complement(62750..63358) 1 NC_015422.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: dia:Dtpsy_0042 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein 63358 10481066 Alide2_0050 Alicycliphilus denitrificans K601 glutathione S-transferase domain-containing protein YP_004386006.1 62750 R 596154 CDS YP_004386007.1 330822704 10481067 complement(63391..63687) 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_0043 protein of unknown function UPF0153; hypothetical protein 63687 10481067 Alide2_0051 Alicycliphilus denitrificans K601 hypothetical protein YP_004386007.1 63391 R 596154 CDS YP_004386008.1 330822705 10481068 complement(63694..64272) 1 NC_015422.1 PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_0044 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 64272 10481068 Alide2_0052 Alicycliphilus denitrificans K601 NADPH-dependent FMN reductase YP_004386008.1 63694 R 596154 CDS YP_004386009.1 330822706 10481069 64350..66383 1 NC_015422.1 KEGG: dia:Dtpsy_0045 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose-inhibited division protein A-related; glucose inhibited division protein A 66383 10481069 Alide2_0053 Alicycliphilus denitrificans K601 glucose inhibited division protein A YP_004386009.1 64350 D 596154 CDS YP_004386010.1 330822707 10481070 66367..66606 1 NC_015422.1 KEGG: pct:PC1_0787 hypothetical protein; hypothetical protein 66606 10481070 Alide2_0054 Alicycliphilus denitrificans K601 hypothetical protein YP_004386010.1 66367 D 596154 CDS YP_004386011.1 330822708 10481071 66599..67246 1 NC_015422.1 KEGG: dia:Dtpsy_0046 16S rRNA methyltransferase GidB; TIGRFAM: rRNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G; methyltransferase GidB 67246 10481071 Alide2_0055 Alicycliphilus denitrificans K601 methyltransferase GidB YP_004386011.1 66599 D 596154 CDS YP_004386012.1 330822709 10481072 67283..67897 1 NC_015422.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dia:Dtpsy_0047 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 67897 10481072 Alide2_0056 Alicycliphilus denitrificans K601 lysine exporter protein LysE/YggA YP_004386012.1 67283 D 596154 CDS YP_004386013.1 330822710 10481073 67906..68676 1 NC_015422.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_0048 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase 68676 10481073 Alide2_0057 Alicycliphilus denitrificans K601 Cobyrinic acid ac-diamide synthase YP_004386013.1 67906 D 596154 CDS YP_004386014.1 330822711 10481074 68761..69303 1 NC_015422.1 PFAM: Protein of unknown function DUF1234; KEGG: ajs:Ajs_0030 hypothetical protein; hypothetical protein 69303 10481074 Alide2_0058 Alicycliphilus denitrificans K601 hypothetical protein YP_004386014.1 68761 D 596154 CDS YP_004386015.1 330822712 10481075 69309..70226 1 NC_015422.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: aav:Aave_0056 chromosome segregation DNA-binding protein; SMART: ParB-like nuclease; parB-like partition protein 70226 10481075 Alide2_0059 Alicycliphilus denitrificans K601 parB-like partition protein YP_004386015.1 69309 D 596154 CDS YP_004386016.1 330822713 10481076 70251..71030 1 NC_015422.1 KEGG: ajs:Ajs_0032 methyltransferase type 12; type 12 methyltransferase 71030 10481076 Alide2_0060 Alicycliphilus denitrificans K601 type 12 methyltransferase YP_004386016.1 70251 D 596154 CDS YP_004386017.1 330822714 10481077 71090..72130 1 NC_015422.1 PFAM: Peptidoglycan binding-like; KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein 72130 10481077 Alide2_0061 Alicycliphilus denitrificans K601 peptidoglycan-binding domain-containing protein YP_004386017.1 71090 D 596154 CDS YP_004386018.1 330822715 10481078 complement(72210..73115) 1 NC_015422.1 KEGG: dia:Dtpsy_0054 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain; AraC family transcriptional regulator 73115 10481078 Alide2_0062 Alicycliphilus denitrificans K601 AraC family transcriptional regulator YP_004386018.1 72210 R 596154 CDS YP_004386019.1 330822716 10481079 73175..74440 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0055 major facilitator superfamily MFS_1; major facilitator superfamily protein 74440 10481079 Alide2_0063 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004386019.1 73175 D 596154 CDS YP_004386020.1 330822717 10481080 complement(74442..75251) 1 NC_015422.1 PFAM: Mechanosensitive ion channel MscS; KEGG: bpy:Bphyt_0752 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 75251 10481080 Alide2_0064 Alicycliphilus denitrificans K601 mechanosensitive ion channel protein MscS YP_004386020.1 74442 R 596154 CDS YP_004386021.1 330822718 10481081 75330..75425 1 NC_015422.1 hypothetical protein 75425 10481081 Alide2_0065 Alicycliphilus denitrificans K601 hypothetical protein YP_004386021.1 75330 D 596154 CDS YP_004386022.1 330822719 10481082 complement(75450..76874) 1 NC_015422.1 KEGG: ajs:Ajs_0040 fis family transcriptional regulator; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; D-lactate dehydrogenase 76874 10481082 Alide2_0066 Alicycliphilus denitrificans K601 D-lactate dehydrogenase YP_004386022.1 75450 R 596154 CDS YP_004386023.1 330822720 10481083 complement(76968..77204) 1 NC_015422.1 KEGG: dia:Dtpsy_0062 calcium-binding EF-hand-containing protein; calcium-binding EF-hand-containing protein 77204 10481083 Alide2_0067 Alicycliphilus denitrificans K601 calcium-binding EF-hand-containing protein YP_004386023.1 76968 R 596154 CDS YP_004386024.1 330822721 10481084 77362..77937 1 NC_015422.1 TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: dia:Dtpsy_0063 ATP/cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; ATP/cobalamin adenosyltransferase 77937 10481084 Alide2_0068 Alicycliphilus denitrificans K601 ATP/cobalamin adenosyltransferase YP_004386024.1 77362 D 596154 CDS YP_004386025.1 330822722 10481085 complement(77998..78420) 1 NC_015422.1 KEGG: ajs:Ajs_0044 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein 78420 10481085 Alide2_0069 Alicycliphilus denitrificans K601 phenylacetic acid degradation-like protein YP_004386025.1 77998 R 596154 CDS YP_004386026.1 330822723 10481086 complement(78503..79969) 1 NC_015422.1 TIGRFAM: Succinate CoA transferase; KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase; PFAM: Acetyl-CoA hydrolase/transferase; succinate CoA transferase 79969 10481086 Alide2_0070 Alicycliphilus denitrificans K601 succinate CoA transferase YP_004386026.1 78503 R 596154 CDS YP_004386027.1 330822724 10481087 80181..80903 1 NC_015422.1 KEGG: dia:Dtpsy_0067 hypothetical protein; hypothetical protein 80903 10481087 Alide2_0071 Alicycliphilus denitrificans K601 hypothetical protein YP_004386027.1 80181 D 596154 CDS YP_004386028.1 330822725 10481088 80958..81872 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rme:Rmet_5369 putative LysR family transcriptional regulator; LysR family transcriptional regulator 81872 10481088 Alide2_0072 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386028.1 80958 D 596154 CDS YP_004386029.1 330822726 10481089 81997..83007 1 NC_015422.1 KEGG: reu:Reut_B4598 hypothetical protein; hypothetical protein 83007 10481089 Alide2_0073 Alicycliphilus denitrificans K601 hypothetical protein YP_004386029.1 81997 D 596154 CDS YP_004386030.1 330822727 10481090 83056..83862 1 NC_015422.1 KEGG: bbr:BB2766 putative short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 83862 10481090 Alide2_0074 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004386030.1 83056 D 596154 CDS YP_004386031.1 330822728 10481091 83864..84625 1 NC_015422.1 KEGG: vap:Vapar_0736 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 84625 10481091 Alide2_0075 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004386031.1 83864 D 596154 CDS YP_004386032.1 330822729 10481092 84657..85172 1 NC_015422.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: axy:AXYL_01971 carboxymuconolactone decarboxylase family protein 2; carboxymuconolactone decarboxylase 85172 10481092 Alide2_0076 Alicycliphilus denitrificans K601 carboxymuconolactone decarboxylase YP_004386032.1 84657 D 596154 CDS YP_004386033.1 330822730 10481093 complement(85179..86465) 1 NC_015422.1 KEGG: ajs:Ajs_0048 uracil-xanthine permease; TIGRFAM: Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 86465 10481093 Alide2_0077 Alicycliphilus denitrificans K601 uracil-xanthine permease YP_004386033.1 85179 R 596154 CDS YP_004386034.1 330822731 10481094 86617..87327 1 NC_015422.1 TIGRFAM: Methyltransferase FkbM; KEGG: sna:Snas_6312 methyltransferase FkbM family; FkbM family methyltransferase 87327 10481094 Alide2_0078 Alicycliphilus denitrificans K601 FkbM family methyltransferase YP_004386034.1 86617 D 596154 CDS YP_004386035.1 330822732 10481095 complement(87454..88722) 1 NC_015422.1 KEGG: ajs:Ajs_0052 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding; Ubiquinone biosynthesis hydroxylase 88722 10481095 Alide2_0079 Alicycliphilus denitrificans K601 Ubiquinone biosynthesis hydroxylase YP_004386035.1 87454 R 596154 CDS YP_004386036.1 330822733 10481096 88892..90967 1 NC_015422.1 TIGRFAM: Acetoacetyl-CoA synthase; KEGG: dia:Dtpsy_0074 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; acetoacetyl-CoA synthase 90967 10481096 Alide2_0080 Alicycliphilus denitrificans K601 acetoacetyl-CoA synthase YP_004386036.1 88892 D 596154 CDS YP_004386037.1 330822734 10481097 complement(90999..91928) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0055 LysR family transcriptional regulator; LysR family transcriptional regulator 91928 10481097 Alide2_0081 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386037.1 90999 R 596154 CDS YP_004386038.1 330822735 10481098 92044..93030 1 NC_015422.1 KEGG: ajs:Ajs_0056 hypothetical protein; hypothetical protein 93030 10481098 Alide2_0082 Alicycliphilus denitrificans K601 hypothetical protein YP_004386038.1 92044 D 596154 CDS YP_004386039.1 330822736 10481099 93056..94213 1 NC_015422.1 KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; isovaleryl-CoA dehydrogenase 94213 10481099 Alide2_0083 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004386039.1 93056 D 596154 CDS YP_004386040.1 330822737 10481100 94233..95258 1 NC_015422.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: ajs:Ajs_0062 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein 95258 10481100 Alide2_0084 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004386040.1 94233 D 596154 CDS YP_004386041.1 330822738 10481101 95364..96152 1 NC_015422.1 PFAM: Crotonase, core; KEGG: ajs:Ajs_0063 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 96152 10481101 Alide2_0085 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004386041.1 95364 D 596154 CDS YP_004386042.1 330822739 10481102 96182..96805 1 NC_015422.1 manually curated; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; KEGG: dia:Dtpsy_0083 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 96805 10481102 Alide2_0086 Alicycliphilus denitrificans K601 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_004386042.1 96182 D 596154 CDS YP_004386043.1 330822740 10481105 99251..99466 1 NC_015422.1 KEGG: rpt:Rpal_2080 hypothetical protein; hypothetical protein 99466 10481105 Alide2_0089 Alicycliphilus denitrificans K601 hypothetical protein YP_004386043.1 99251 D 596154 CDS YP_004386044.1 330822741 10481106 99634..100413 1 NC_015422.1 TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: dia:Dtpsy_0084 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal; septum site-determining protein minC 100413 10481106 Alide2_0090 Alicycliphilus denitrificans K601 septum site-determining protein minC YP_004386044.1 99634 D 596154 CDS YP_004386045.1 330822742 10481107 100468..101283 1 NC_015422.1 KEGG: dia:Dtpsy_0085 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; septum site-determining protein MinD 101283 10481107 Alide2_0091 Alicycliphilus denitrificans K601 septum site-determining protein MinD YP_004386045.1 100468 D 596154 CDS YP_004386046.1 330822743 10481108 101290..101559 1 NC_015422.1 KEGG: dia:Dtpsy_0086 cell division topological specificity factor MinE; TIGRFAM: Septum formation topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; cell division topological specificity factor MinE 101559 10481108 Alide2_0092 Alicycliphilus denitrificans K601 cell division topological specificity factor MinE YP_004386046.1 101290 D 596154 CDS YP_004386047.1 330822744 10481109 complement(101570..102508) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_1015 LysR family transcriptional regulator; LysR family transcriptional regulator 102508 10481109 Alide2_0093 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386047.1 101570 R 596154 CDS YP_004386048.1 330822745 10481110 102622..103599 1 NC_015422.1 KEGG: pol:Bpro_4513 hypothetical protein; hypothetical protein 103599 10481110 Alide2_0094 Alicycliphilus denitrificans K601 hypothetical protein YP_004386048.1 102622 D 596154 CDS YP_004386049.1 330822746 10481111 103627..104790 1 NC_015422.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: mes:Meso_4537 galactonate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; galactonate dehydratase 104790 10481111 Alide2_0095 Alicycliphilus denitrificans K601 galactonate dehydratase YP_004386049.1 103627 D 596154 CDS YP_004386050.1 330822747 10481112 complement(104808..105347) 1 NC_015422.1 manually curated; PFAM: Flavin reductase-like, FMN-binding; KEGG: ajs:Ajs_0068 flavin reductase domain-containing protein; SMART: Flavin reductase-like, FMN-binding; flavin reductase domain-containing proten 105347 10481112 Alide2_0096 Alicycliphilus denitrificans K601 flavin reductase domain-containing proten YP_004386050.1 104808 R 596154 CDS YP_004386051.1 330822748 10481113 105454..106230 1 NC_015422.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_0088 alpha/beta hydrolase fold protein; alpha/beta fold family hydrolase 106230 10481113 Alide2_0097 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004386051.1 105454 D 596154 CDS YP_004386052.1 330822749 10481114 106304..106969 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_0073 TetR family transcriptional regulator; TetR family transcriptional regulator 106969 10481114 Alide2_0098 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004386052.1 106304 D 596154 CDS YP_004386053.1 330822750 10481115 complement(106917..107339) 1 NC_015422.1 PFAM: UspA; KEGG: ajs:Ajs_0074 UspA domain-containing protein; UspA domain-containing protein 107339 10481115 Alide2_0099 Alicycliphilus denitrificans K601 UspA domain-containing protein YP_004386053.1 106917 R 596154 CDS YP_004386054.1 330822751 10481116 complement(107441..108289) 1 NC_015422.1 PFAM: Metallo-dependent phosphatase; KEGG: ajs:Ajs_0075 metallophosphoesterase; metallophosphoesterase 108289 10481116 Alide2_0100 Alicycliphilus denitrificans K601 metallophosphoesterase YP_004386054.1 107441 R 596154 CDS YP_004386055.1 330822752 10481117 complement(108316..109287) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0076 LysR family transcriptional regulator; LysR family transcriptional regulator 109287 10481117 Alide2_0101 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386055.1 108316 R 596154 CDS YP_004386056.1 330822753 10481118 109413..109853 1 NC_015422.1 KEGG: ajs:Ajs_0077 hypothetical protein; hypothetical protein 109853 10481118 Alide2_0102 Alicycliphilus denitrificans K601 hypothetical protein YP_004386056.1 109413 D 596154 CDS YP_004386057.1 330822754 10481119 complement(109993..111861) 1 NC_015422.1 KEGG: dac:Daci_0114 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, GTP-utilising; phosphoenolpyruvate carboxykinase 111861 10481119 Alide2_0103 Alicycliphilus denitrificans K601 phosphoenolpyruvate carboxykinase YP_004386057.1 109993 R 596154 CDS YP_004386058.1 330822755 10481120 complement(112202..112363) 1 NC_015422.1 KEGG: dia:Dtpsy_0098 hypothetical protein; hypothetical protein 112363 10481120 Alide2_0104 Alicycliphilus denitrificans K601 hypothetical protein YP_004386058.1 112202 R 596154 CDS YP_004386059.1 330822756 10481121 complement(112453..113652) 1 NC_015422.1 KEGG: dia:Dtpsy_0099 threonine dehydratase; TIGRFAM: Threonine dehydratase II; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Amino acid-binding ACT; threonine dehydratase 113652 10481121 Alide2_0105 Alicycliphilus denitrificans K601 threonine dehydratase YP_004386059.1 112453 R 596154 CDS YP_004386060.1 330822757 10481122 complement(113755..115416) 1 NC_015422.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: ajs:Ajs_0081 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein 115416 10481122 Alide2_0106 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004386060.1 113755 R 596154 CDS YP_004386061.1 330822758 10481123 complement(115472..118192) 1 NC_015422.1 SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, magnesium-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: pfl:PFL_4078 magnesium-transporting ATPase MgtA; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; magnesium-translocating P-type ATPase 118192 10481123 Alide2_0107 Alicycliphilus denitrificans K601 magnesium-translocating P-type ATPase YP_004386061.1 115472 R 596154 CDS YP_004386062.1 330822759 10481124 complement(118327..119358) 1 NC_015422.1 KEGG: ajs:Ajs_0083 methionine synthase (B12-dependent); PFAM: Homocysteine S-methyltransferase; methionine synthase 119358 10481124 Alide2_0108 Alicycliphilus denitrificans K601 methionine synthase YP_004386062.1 118327 R 596154 CDS YP_004386063.1 330822760 10481125 complement(119355..120356) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_0175 LysR family transcriptional regulator; LysR family transcriptional regulator 120356 10481125 Alide2_0109 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386063.1 119355 R 596154 CDS YP_004386064.1 330822761 10481126 complement(120381..121544) 1 NC_015422.1 KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase 121544 10481126 Alide2_0110 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004386064.1 120381 R 596154 CDS YP_004386065.1 330822762 10481127 complement(121541..121924) 1 NC_015422.1 PFAM: Cupin 2, conserved barrel; KEGG: aav:Aave_0177 cupin 2 domain-containing protein; cupin 2 barrel domain-containing protein 121924 10481127 Alide2_0111 Alicycliphilus denitrificans K601 cupin 2 barrel domain-containing protein YP_004386065.1 121541 R 596154 CDS YP_004386066.1 330822763 10481128 complement(121941..122906) 1 NC_015422.1 KEGG: xtr:100487983 UPF0065 protein in clcB-clcD intergenic region-like; hypothetical protein 122906 10481128 Alide2_0112 Alicycliphilus denitrificans K601 hypothetical protein YP_004386066.1 121941 R 596154 CDS YP_004386067.1 330822764 10481129 123164..125032 1 NC_015422.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: dia:Dtpsy_0103 ATP-dependent DNA helicase RecQ; SMART: RQC domain; Helicase, C-terminal; DEAD-like helicase, N-terminal; Helicase/RNase D C-terminal, HRDC domain; ATP-dependent DNA helicase RecQ 125032 10481129 Alide2_0113 Alicycliphilus denitrificans K601 ATP-dependent DNA helicase RecQ YP_004386067.1 123164 D 596154 CDS YP_004386068.1 330822765 10481130 complement(125036..125716) 1 NC_015422.1 KEGG: ajs:Ajs_0085 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic-like; PFAM: Radical SAM; anaerobic ribonucleoside-triphosphate reductase activating protein 125716 10481130 Alide2_0114 Alicycliphilus denitrificans K601 anaerobic ribonucleoside-triphosphate reductase activating protein YP_004386068.1 125036 R 596154 CDS YP_004386069.1 330822766 10481131 complement(125694..125894) 1 NC_015422.1 KEGG: dia:Dtpsy_0105 hypothetical protein; hypothetical protein 125894 10481131 Alide2_0115 Alicycliphilus denitrificans K601 hypothetical protein YP_004386069.1 125694 R 596154 CDS YP_004386070.1 330822767 10481132 complement(125977..128007) 1 NC_015422.1 KEGG: dia:Dtpsy_0106 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; PFAM: ATP-cone; anaerobic ribonucleoside-triphosphate reductase 128007 10481132 Alide2_0116 Alicycliphilus denitrificans K601 anaerobic ribonucleoside-triphosphate reductase YP_004386070.1 125977 R 596154 CDS YP_004386071.1 330822768 10481133 complement(128132..131434) 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; PAS fold-4; KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif; PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 131434 10481133 Alide2_0117 Alicycliphilus denitrificans K601 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_004386071.1 128132 R 596154 CDS YP_004386072.1 330822769 10481134 complement(131720..132148) 1 NC_015422.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: dia:Dtpsy_0108 hemerythrin HHE cation binding domain-containing protein; hemerythrin HHE cation binding domain-containing protein 132148 10481134 Alide2_0118 Alicycliphilus denitrificans K601 hemerythrin HHE cation binding domain-containing protein YP_004386072.1 131720 R 596154 CDS YP_004386073.1 330822770 10481135 complement(132218..134527) 1 NC_015422.1 KEGG: dia:Dtpsy_0109 nitric oxide reductase large subunit; nitric oxide reductase large subunit 134527 10481135 Alide2_0119 Alicycliphilus denitrificans K601 nitric oxide reductase large subunit YP_004386073.1 132218 R 596154 CDS YP_004386074.1 330822771 10481136 134679..136280 1 NC_015422.1 KEGG: dia:Dtpsy_0110 anaerobic nitric oxide reductase transcription regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma-54 specific transcriptional regulator 136280 10481136 Alide2_0120 Alicycliphilus denitrificans K601 Fis family sigma-54 specific transcriptional regulator YP_004386074.1 134679 D 596154 CDS YP_004386075.1 330822772 10481137 complement(136333..136995) 1 NC_015422.1 PFAM: Domain of unknown function DUF1794; KEGG: ctt:CtCNB1_2843 hypothetical protein; hypothetical protein 136995 10481137 Alide2_0121 Alicycliphilus denitrificans K601 hypothetical protein YP_004386075.1 136333 R 596154 CDS YP_004386076.1 330822773 10481138 137233..138621 1 NC_015422.1 TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: dia:Dtpsy_0112 L-serine dehydratase 1; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain; L-serine dehydratase 1 138621 10481138 Alide2_0122 Alicycliphilus denitrificans K601 L-serine dehydratase 1 YP_004386076.1 137233 D 596154 CDS YP_004386077.1 330822774 10481139 138753..139703 1 NC_015422.1 KEGG: xtr:100490070 protein bugT-like; hypothetical protein 139703 10481139 Alide2_0123 Alicycliphilus denitrificans K601 hypothetical protein YP_004386077.1 138753 D 596154 CDS YP_004386078.1 330822775 10481140 139708..141282 1 NC_015422.1 KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 141282 10481140 Alide2_0124 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004386078.1 139708 D 596154 CDS YP_004386079.1 330822776 10481141 141300..142292 1 NC_015422.1 KEGG: ajs:Ajs_0099 hypothetical protein; hypothetical protein 142292 10481141 Alide2_0125 Alicycliphilus denitrificans K601 hypothetical protein YP_004386079.1 141300 D 596154 CDS YP_004386080.1 330822777 10481142 142305..142760 1 NC_015422.1 KEGG: dia:Dtpsy_0117 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein 142760 10481142 Alide2_0126 Alicycliphilus denitrificans K601 phenylacetic acid degradation-like protein YP_004386080.1 142305 D 596154 CDS YP_004386081.1 330822778 10481143 complement(142782..143792) 1 NC_015422.1 KEGG: dia:Dtpsy_0118 hypothetical protein; hypothetical protein 143792 10481143 Alide2_0127 Alicycliphilus denitrificans K601 hypothetical protein YP_004386081.1 142782 R 596154 CDS YP_004386082.1 330822779 10481144 complement(143832..144818) 1 NC_015422.1 KEGG: dia:Dtpsy_0119 hypothetical protein; hypothetical protein 144818 10481144 Alide2_0128 Alicycliphilus denitrificans K601 hypothetical protein YP_004386082.1 143832 R 596154 CDS YP_004386083.1 330822780 10481145 complement(144851..146005) 1 NC_015422.1 KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; long-chain-acyl-CoA dehydrogenase 146005 10481145 Alide2_0129 Alicycliphilus denitrificans K601 long-chain-acyl-CoA dehydrogenase YP_004386083.1 144851 R 596154 CDS YP_004386084.1 330822781 10481146 complement(146081..147628) 1 NC_015422.1 KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 147628 10481146 Alide2_0130 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004386084.1 146081 R 596154 CDS YP_004386085.1 330822782 10481147 147834..149012 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: dia:Dtpsy_0122 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 149012 10481147 Alide2_0131 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004386085.1 147834 D 596154 CDS YP_004386086.1 330822783 10481148 149068..149835 1 NC_015422.1 KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 149835 10481148 Alide2_0132 Alicycliphilus denitrificans K601 3-hydroxy-2-methylbutyryl-CoA dehydrogenase YP_004386086.1 149068 D 596154 CDS YP_004386087.1 330822784 10481149 149904..150902 1 NC_015422.1 KEGG: dia:Dtpsy_0125 hypothetical protein; hypothetical protein 150902 10481149 Alide2_0133 Alicycliphilus denitrificans K601 hypothetical protein YP_004386087.1 149904 D 596154 CDS YP_004386088.1 330822785 10481150 150912..151718 1 NC_015422.1 KEGG: ajs:Ajs_0109 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 2,4-dienoyl-CoA reductase 151718 10481150 Alide2_0134 Alicycliphilus denitrificans K601 2,4-dienoyl-CoA reductase YP_004386088.1 150912 D 596154 CDS YP_004386089.1 330822786 10481151 151715..151819 1 NC_015422.1 hypothetical protein 151819 10481151 Alide2_0135 Alicycliphilus denitrificans K601 hypothetical protein YP_004386089.1 151715 D 596154 CDS YP_004386090.1 330822787 10481152 151856..152635 1 NC_015422.1 KEGG: dia:Dtpsy_0128 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 152635 10481152 Alide2_0136 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004386090.1 151856 D 596154 CDS YP_004386091.1 330822788 10481153 152730..153839 1 NC_015422.1 KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; alpha-methylacyl-CoA racemase 153839 10481153 Alide2_0137 Alicycliphilus denitrificans K601 alpha-methylacyl-CoA racemase YP_004386091.1 152730 D 596154 CDS YP_004386092.1 330822789 10481154 complement(153943..154359) 1 NC_015422.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: reh:H16_A2147 hypothetical protein; hypothetical protein 154359 10481154 Alide2_0138 Alicycliphilus denitrificans K601 hypothetical protein YP_004386092.1 153943 R 596154 CDS YP_004386093.1 330822790 10481155 complement(154361..155521) 1 NC_015422.1 KEGG: reh:H16_A2148 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 155521 10481155 Alide2_0139 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004386093.1 154361 R 596154 CDS YP_004386094.1 330822791 10481156 complement(155544..156701) 1 NC_015422.1 KEGG: reh:H16_A2149 acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; long-chain-acyl-CoA dehydrogenase 156701 10481156 Alide2_0140 Alicycliphilus denitrificans K601 long-chain-acyl-CoA dehydrogenase YP_004386094.1 155544 R 596154 CDS YP_004386095.1 330822792 10481157 complement(156736..158277) 1 NC_015422.1 KEGG: reh:H16_A2150 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 158277 10481157 Alide2_0141 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004386095.1 156736 R 596154 CDS YP_004386096.1 330822793 10481158 complement(158264..159199) 1 NC_015422.1 KEGG: reh:H16_A2151 putative acyl dehydratase; PFAM: MaoC-like dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 159199 10481158 Alide2_0142 Alicycliphilus denitrificans K601 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_004386096.1 158264 R 596154 CDS YP_004386097.1 330822794 10481159 complement(159217..160140) 1 NC_015422.1 KEGG: reh:H16_A2152 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxyacyl-CoA dehydrogenase 160140 10481159 Alide2_0143 Alicycliphilus denitrificans K601 3-hydroxyacyl-CoA dehydrogenase YP_004386097.1 159217 R 596154 CDS YP_004386098.1 330822795 10481160 complement(160166..161149) 1 NC_015422.1 KEGG: reh:H16_A2153 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor 161149 10481160 Alide2_0144 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor YP_004386098.1 160166 R 596154 CDS YP_004386099.1 330822796 10481161 161379..162164 1 NC_015422.1 KEGG: reh:H16_A2154 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 162164 10481161 Alide2_0145 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004386099.1 161379 D 596154 CDS YP_004386100.1 330822797 10481162 complement(162184..163440) 1 NC_015422.1 KEGG: ajs:Ajs_0113 major facilitator superfamily transporter; manually curated; PFAM: Major facilitator superfamily MFS-1; major facilitator superfamily protein 163440 10481162 Alide2_0146 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004386100.1 162184 R 596154 CDS YP_004386101.1 330822798 10481163 complement(163481..164344) 1 NC_015422.1 KEGG: dia:Dtpsy_0131 HpcH/HpaI aldolase; PFAM: Aldehyde-lyase domain; citryl-CoA lyase 164344 10481163 Alide2_0147 Alicycliphilus denitrificans K601 citryl-CoA lyase YP_004386101.1 163481 R 596154 CDS YP_004386102.1 330822799 10481164 complement(164377..165372) 1 NC_015422.1 KEGG: dia:Dtpsy_0133 hypothetical protein; hypothetical protein 165372 10481164 Alide2_0148 Alicycliphilus denitrificans K601 hypothetical protein YP_004386102.1 164377 R 596154 CDS YP_004386103.1 330822800 10481165 complement(165446..166831) 1 NC_015422.1 PFAM: MmgE/PrpD; KEGG: dia:Dtpsy_0134 MmgE/PrpD family protein; MmgE/PrpD family protein 166831 10481165 Alide2_0149 Alicycliphilus denitrificans K601 MmgE/PrpD family protein YP_004386103.1 165446 R 596154 CDS YP_004386104.1 330822801 10481166 complement(166882..168063) 1 NC_015422.1 KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 168063 10481166 Alide2_0150 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004386104.1 166882 R 596154 CDS YP_004386105.1 330822802 10481167 complement(168074..169240) 1 NC_015422.1 KEGG: dac:Daci_0198 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; isovaleryl-CoA dehydrogenase 169240 10481167 Alide2_0151 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004386105.1 168074 R 596154 CDS YP_004386106.1 330822803 10481168 complement(169314..170198) 1 NC_015422.1 KEGG: dia:Dtpsy_0137 hypothetical protein; hypothetical protein 170198 10481168 Alide2_0152 Alicycliphilus denitrificans K601 hypothetical protein YP_004386106.1 169314 R 596154 CDS YP_004386107.1 330822804 10481169 170392..171309 1 NC_015422.1 KEGG: dia:Dtpsy_0138 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxyacyl-CoA dehydrogenase 171309 10481169 Alide2_0153 Alicycliphilus denitrificans K601 3-hydroxyacyl-CoA dehydrogenase YP_004386107.1 170392 D 596154 CDS YP_004386108.1 330822805 10481170 171313..172206 1 NC_015422.1 KEGG: ajs:Ajs_0121 dehydratase; PFAM: MaoC-like dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 172206 10481170 Alide2_0154 Alicycliphilus denitrificans K601 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_004386108.1 171313 D 596154 CDS YP_004386109.1 330822806 10481171 172289..173083 1 NC_015422.1 PFAM: Crotonase, core; KEGG: dia:Dtpsy_0140 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 173083 10481171 Alide2_0155 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004386109.1 172289 D 596154 CDS YP_004386110.1 330822807 10481172 173220..174503 1 NC_015422.1 PFAM: Acetyl-CoA hydrolase/transferase; KEGG: ajs:Ajs_0123 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 174503 10481172 Alide2_0156 Alicycliphilus denitrificans K601 acetyl-CoA hydrolase/transferase YP_004386110.1 173220 D 596154 CDS YP_004386111.1 330822808 10481173 174570..175778 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: ajs:Ajs_0124 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 175778 10481173 Alide2_0157 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004386111.1 174570 D 596154 CDS YP_004386112.1 330822809 10481174 complement(175793..176716) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0188 LysR family transcriptional regulator; LysR family transcriptional regulator 176716 10481174 Alide2_0158 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386112.1 175793 R 596154 CDS YP_004386113.1 330822810 10481175 176894..178078 1 NC_015422.1 KEGG: dac:Daci_0189 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 178078 10481175 Alide2_0159 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004386113.1 176894 D 596154 CDS YP_004386114.1 330822811 10481176 178093..179118 1 NC_015422.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dac:Daci_0190 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase; NADPH:quinone reductase 179118 10481176 Alide2_0160 Alicycliphilus denitrificans K601 NADPH:quinone reductase YP_004386114.1 178093 D 596154 CDS YP_004386115.1 330822812 10481177 179115..180140 1 NC_015422.1 KEGG: xtr:100498142 UPF0065 protein in clcB-clcD intergenic region-like; hypothetical protein 180140 10481177 Alide2_0161 Alicycliphilus denitrificans K601 hypothetical protein YP_004386115.1 179115 D 596154 CDS YP_004386116.1 330822813 10481178 complement(180171..181079) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_3679 LysR family transcriptional regulator; LysR family transcriptional regulator 181079 10481178 Alide2_0162 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386116.1 180171 R 596154 CDS YP_004386117.1 330822814 10481179 181189..182172 1 NC_015422.1 KEGG: aav:Aave_3678 hypothetical protein; hypothetical protein 182172 10481179 Alide2_0163 Alicycliphilus denitrificans K601 hypothetical protein YP_004386117.1 181189 D 596154 CDS YP_004386118.1 330822815 10481180 182169..183368 1 NC_015422.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: aav:Aave_3677 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; amidohydrolase 183368 10481180 Alide2_0164 Alicycliphilus denitrificans K601 amidohydrolase YP_004386118.1 182169 D 596154 CDS YP_004386119.1 330822816 10481181 183548..184528 1 NC_015422.1 KEGG: ajs:Ajs_0125 hypothetical protein; hypothetical protein 184528 10481181 Alide2_0165 Alicycliphilus denitrificans K601 hypothetical protein YP_004386119.1 183548 D 596154 CDS YP_004386120.1 330822817 10481182 184530..186038 1 NC_015422.1 KEGG: dac:Daci_0186 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 186038 10481182 Alide2_0166 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004386120.1 184530 D 596154 CDS YP_004386121.1 330822818 10481183 186056..187039 1 NC_015422.1 KEGG: xtr:100497979 hypothetical protein LOC100497979; hypothetical protein 187039 10481183 Alide2_0167 Alicycliphilus denitrificans K601 hypothetical protein YP_004386121.1 186056 D 596154 CDS YP_004386122.1 330822819 10481184 complement(187094..188095) 1 NC_015422.1 KEGG: reh:H16_B1474 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor 188095 10481184 Alide2_0168 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor YP_004386122.1 187094 R 596154 CDS YP_004386123.1 330822820 10481185 complement(188116..189297) 1 NC_015422.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; manually curated; KEGG: reu:Reut_B4300 peptidase M20D, amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; amidohydrolase 189297 10481185 Alide2_0169 Alicycliphilus denitrificans K601 amidohydrolase YP_004386123.1 188116 R 596154 CDS YP_004386124.1 330822821 10481186 189562..189981 1 NC_015422.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: ajs:Ajs_0128 hypothetical protein; hypothetical protein 189981 10481186 Alide2_0170 Alicycliphilus denitrificans K601 hypothetical protein YP_004386124.1 189562 D 596154 CDS YP_004386125.1 330822822 10481187 189978..191186 1 NC_015422.1 PFAM: Thiolase, C-terminal; KEGG: ajs:Ajs_0129 thiolase; thiolase domain-containing protein 191186 10481187 Alide2_0171 Alicycliphilus denitrificans K601 thiolase domain-containing protein YP_004386125.1 189978 D 596154 CDS YP_004386126.1 330822823 10481188 191206..192363 1 NC_015422.1 KEGG: dia:Dtpsy_0148 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 192363 10481188 Alide2_0172 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004386126.1 191206 D 596154 CDS YP_004386127.1 330822824 10481189 192360..192791 1 NC_015422.1 KEGG: dac:Daci_0175 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein 192791 10481189 Alide2_0173 Alicycliphilus denitrificans K601 phenylacetic acid degradation-like protein YP_004386127.1 192360 D 596154 CDS YP_004386128.1 330822825 10481190 complement(192788..193537) 1 NC_015422.1 KEGG: vei:Veis_2216 regulatory proteins, IclR; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 193537 10481190 Alide2_0174 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004386128.1 192788 R 596154 CDS YP_004386129.1 330822826 10481191 193668..194654 1 NC_015422.1 KEGG: vei:Veis_2212 hypothetical protein; hypothetical protein 194654 10481191 Alide2_0175 Alicycliphilus denitrificans K601 hypothetical protein YP_004386129.1 193668 D 596154 CDS YP_004386130.1 330822827 10481192 194651..195511 1 NC_015422.1 KEGG: vei:Veis_2211 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; trans-2-enoyl-CoA reductase (NADPH) 195511 10481192 Alide2_0176 Alicycliphilus denitrificans K601 trans-2-enoyl-CoA reductase (NADPH) YP_004386130.1 194651 D 596154 CDS YP_004386131.1 330822828 10481193 195511..196659 1 NC_015422.1 KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; isovaleryl-CoA dehydrogenase 196659 10481193 Alide2_0177 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004386131.1 195511 D 596154 CDS YP_004386132.1 330822829 10481194 196709..198328 1 NC_015422.1 KEGG: axy:AXYL_05145 methylcrotonoyl-CoA carboxylase subunit beta; PFAM: Carboxyl transferase; methylcrotonoyl-CoA carboxylase 198328 10481194 Alide2_0178 Alicycliphilus denitrificans K601 methylcrotonoyl-CoA carboxylase YP_004386132.1 196709 D 596154 CDS YP_004386133.1 330822830 10481195 198339..199502 1 NC_015422.1 KEGG: reu:Reut_B4462 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; isovaleryl-CoA dehydrogenase 199502 10481195 Alide2_0179 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004386133.1 198339 D 596154 CDS YP_004386134.1 330822831 10481196 199504..200325 1 NC_015422.1 PFAM: Crotonase, core; KEGG: vei:Veis_2207 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 200325 10481196 Alide2_0180 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004386134.1 199504 D 596154 CDS YP_004386135.1 330822832 10481197 200339..202333 1 NC_015422.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: reu:Reut_B4460 carbamoyl-phosphate synthase subunit L; SMART: Biotin carboxylase, C-terminal; methylcrotonoyl-CoA carboxylase 202333 10481197 Alide2_0181 Alicycliphilus denitrificans K601 methylcrotonoyl-CoA carboxylase YP_004386135.1 200339 D 596154 CDS YP_004386136.1 330822833 10481198 202330..204144 1 NC_015422.1 PFAM: Protein of unknown function DUF1446; KEGG: reu:Reut_B4459 hypothetical protein; hypothetical protein 204144 10481198 Alide2_0182 Alicycliphilus denitrificans K601 hypothetical protein YP_004386136.1 202330 D 596154 CDS YP_004386137.1 330822834 10481199 204168..205148 1 NC_015422.1 KEGG: axy:AXYL_05150 extra-cytoplasmic solute receptor family protein 140; extra-cytoplasmic solute receptor family protein 205148 10481199 Alide2_0183 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor family protein YP_004386137.1 204168 D 596154 CDS YP_004386138.1 330822835 10481200 205156..206376 1 NC_015422.1 KEGG: vei:Veis_2206 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 206376 10481200 Alide2_0184 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004386138.1 205156 D 596154 CDS YP_004386139.1 330822836 10481201 complement(206422..207339) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0150 transcriptional regulator, LysR family; LysR family transcriptional regulator 207339 10481201 Alide2_0185 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386139.1 206422 R 596154 CDS YP_004386140.1 330822837 10481202 207449..208726 1 NC_015422.1 KEGG: dia:Dtpsy_0151 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 208726 10481202 Alide2_0186 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004386140.1 207449 D 596154 CDS YP_004386141.1 330822838 10481203 complement(208778..209677) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_0218 transcriptional regulator, LysR family; LysR family transcriptional regulator 209677 10481203 Alide2_0187 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386141.1 208778 R 596154 CDS YP_004386142.1 330822839 10481204 209815..210828 1 NC_015422.1 KEGG: ctt:CtCNB1_0219 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 210828 10481204 Alide2_0188 Alicycliphilus denitrificans K601 twin-arginine translocation pathway signal protein YP_004386142.1 209815 D 596154 CDS YP_004386143.1 330822840 10481205 210960..212150 1 NC_015422.1 KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 212150 10481205 Alide2_0189 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004386143.1 210960 D 596154 CDS YP_004386144.1 330822841 10481206 complement(212175..213467) 1 NC_015422.1 PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: dia:Dtpsy_0153 Glu/Leu/Phe/Val dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate dehydrogenase 213467 10481206 Alide2_0190 Alicycliphilus denitrificans K601 glutamate dehydrogenase YP_004386144.1 212175 R 596154 CDS YP_004386145.1 330822842 10481207 213654..214103 1 NC_015422.1 PFAM: Transmembrane pair, bacterial; KEGG: dia:Dtpsy_0156 transmembrane pair domain protein; transmembrane pair domain-containing protein 214103 10481207 Alide2_0191 Alicycliphilus denitrificans K601 transmembrane pair domain-containing protein YP_004386145.1 213654 D 596154 CDS YP_004386146.1 330822843 10481208 214150..215085 1 NC_015422.1 PFAM: SdiA-regulated; KEGG: psa:PST_0402 hypothetical protein; SdiA-regulated domain-containing protein 215085 10481208 Alide2_0192 Alicycliphilus denitrificans K601 SdiA-regulated domain-containing protein YP_004386146.1 214150 D 596154 CDS YP_004386147.1 330822844 10481209 215213..217948 1 NC_015422.1 TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: dac:Daci_0232 methionine synthase; PFAM: Vitamin B12-dependent methionine synthase, activation domain; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Pterin-binding; methionine synthase 217948 10481209 Alide2_0193 Alicycliphilus denitrificans K601 methionine synthase YP_004386147.1 215213 D 596154 CDS YP_004386148.1 330822845 10481210 218107..221196 1 NC_015422.1 TIGRFAM: CRISPR-associated protein, SAG0894; KEGG: vei:Veis_1230 CRISPR-associated endonuclease Csn1 family protein; CRISPR-associated protein, Csn1 family 221196 10481210 Alide2_0194 Alicycliphilus denitrificans K601 CRISPR-associated protein, Csn1 family YP_004386148.1 218107 D 596154 CDS YP_004386149.1 330822846 10481211 221202..222131 1 NC_015422.1 KEGG: vei:Veis_1231 CRISPR-associated Cas1 family protein; TIGRFAM: CRISPR-associated protein Cas1, NMENI subtype; CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 222131 10481211 Alide2_0195 Alicycliphilus denitrificans K601 CRISPR-associated protein Cas1 YP_004386149.1 221202 D 596154 CDS YP_004386150.1 330822847 10481212 222174..222389 1 NC_015422.1 KEGG: vei:Veis_1232 CRISPR-associated Cas2 family protein; TIGRFAM: CRISPR associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2; CRISPR-associated protein Cas2 222389 10481212 Alide2_0196 Alicycliphilus denitrificans K601 CRISPR-associated protein Cas2 YP_004386150.1 222174 D 596154 CDS YP_004386151.1 330822848 10481214 complement(222726..224240) 1 NC_015422.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66 224240 10481214 Alide2_0198 Alicycliphilus denitrificans K601 transposase IS66 YP_004386151.1 222726 R 596154 CDS YP_004386152.1 330822849 10481215 complement(224323..224655) 1 NC_015422.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 224655 10481215 Alide2_0199 Alicycliphilus denitrificans K601 IS66 Orf2 family protein YP_004386152.1 224323 R 596154 CDS YP_004386153.1 330822850 10481216 complement(224652..225080) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein 225080 10481216 Alide2_0200 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004386153.1 224652 R 596154 CDS YP_004386154.1 330822851 10481218 226463..227278 1 NC_015422.1 KEGG: mpt:Mpe_A2996 putative transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 227278 10481218 Alide2_0202 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004386154.1 226463 D 596154 CDS YP_004386155.1 330822852 10481220 complement(232822..233364) 1 NC_015422.1 KEGG: dia:Dtpsy_0168 shikimate kinase; PFAM: Shikimate kinase; shikimate kinase 233364 10481220 Alide2_0204 Alicycliphilus denitrificans K601 shikimate kinase YP_004386155.1 232822 R 596154 CDS YP_004386156.1 330822853 10481221 233470..234369 1 NC_015422.1 PFAM: Ribonuclease BN-related; KEGG: ajs:Ajs_0151 ribonuclease BN; ribonuclease BN 234369 10481221 Alide2_0205 Alicycliphilus denitrificans K601 ribonuclease BN YP_004386156.1 233470 D 596154 CDS YP_004386157.1 330822854 10481222 234495..235211 1 NC_015422.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: ajs:Ajs_0152 17 kDa surface antigen; 17 kDa surface antigen 235211 10481222 Alide2_0206 Alicycliphilus denitrificans K601 17 kDa surface antigen YP_004386157.1 234495 D 596154 CDS YP_004386158.1 330822855 10481223 complement(235268..236041) 1 NC_015422.1 KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; ferredoxin--NADP(+) reductase 236041 10481223 Alide2_0207 Alicycliphilus denitrificans K601 ferredoxin--NADP(+) reductase YP_004386158.1 235268 R 596154 CDS YP_004386159.1 330822856 10481224 236234..237430 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_0172 extracellular ligand-binding receptor; extracellular ligand-binding receptor 237430 10481224 Alide2_0208 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004386159.1 236234 D 596154 CDS YP_004386160.1 330822857 10481225 237447..239345 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: ajs:Ajs_0155 inner-membrane translocator; ABC transporter permease 239345 10481225 Alide2_0209 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386160.1 237447 D 596154 CDS YP_004386161.1 330822858 10481226 239342..240880 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: vei:Veis_0860 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 240880 10481226 Alide2_0210 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004386161.1 239342 D 596154 CDS YP_004386162.1 330822859 10481227 241028..243928 1 NC_015422.1 KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal; peptidase C1A papain 243928 10481227 Alide2_0211 Alicycliphilus denitrificans K601 peptidase C1A papain YP_004386162.1 241028 D 596154 CDS YP_004386163.1 330822860 10481230 complement(245625..247160) 1 NC_015422.1 TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: dia:Dtpsy_0179 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core; Mg chelatase subunit ChlI 247160 10481230 Alide2_0214 Alicycliphilus denitrificans K601 Mg chelatase subunit ChlI YP_004386163.1 245625 R 596154 CDS YP_004386164.1 330822861 10481231 247299..248030 1 NC_015422.1 KEGG: dia:Dtpsy_0180 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02001; PFAM: Conserved hypothetical protein CHP02001; hypothetical protein 248030 10481231 Alide2_0215 Alicycliphilus denitrificans K601 hypothetical protein YP_004386164.1 247299 D 596154 CDS YP_004386165.1 330822862 10481232 248050..248388 1 NC_015422.1 KEGG: aav:Aave_0233 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 248388 10481232 Alide2_0216 Alicycliphilus denitrificans K601 nitrogen regulatory protein P-II YP_004386165.1 248050 D 596154 CDS YP_004386166.1 330822863 10481233 248411..249799 1 NC_015422.1 KEGG: ajs:Ajs_0164 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter; ammonium transporter 249799 10481233 Alide2_0217 Alicycliphilus denitrificans K601 ammonium transporter YP_004386166.1 248411 D 596154 CDS YP_004386167.1 330822864 10481234 250530..250853 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 250853 10481234 Alide2_0218 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004386167.1 250530 D 596154 CDS YP_004386168.1 330822865 10481237 252923..253726 1 NC_015422.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 253726 10481237 Alide2_0221 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004386168.1 252923 D 596154 CDS YP_004386169.1 330822866 10481238 complement(253777..253902) 1 NC_015422.1 hypothetical protein 253902 10481238 Alide2_0222 Alicycliphilus denitrificans K601 hypothetical protein YP_004386169.1 253777 R 596154 CDS YP_004386170.1 330822867 10481239 complement(254064..254954) 1 NC_015422.1 KEGG: esa:ESA_04058 hypothetical protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 254954 10481239 Alide2_0223 Alicycliphilus denitrificans K601 3-hydroxyisobutyrate dehydrogenase YP_004386170.1 254064 R 596154 CDS YP_004386171.1 330822868 10481240 complement(254951..255811) 1 NC_015422.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: axy:AXYL_03189 alpha/beta hydrolase fold family protein 10; alpha/beta fold family hydrolase 255811 10481240 Alide2_0224 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004386171.1 254951 R 596154 CDS YP_004386172.1 330822869 10481241 complement(255801..256151) 1 NC_015422.1 KEGG: axy:AXYL_03188 hypothetical protein; hypothetical protein 256151 10481241 Alide2_0225 Alicycliphilus denitrificans K601 hypothetical protein YP_004386172.1 255801 R 596154 CDS YP_004386173.1 330822870 10481242 complement(256234..257301) 1 NC_015422.1 KEGG: vap:Vapar_4786 membrane protein AbrB duplication; TIGRFAM: AbrB duplication, membrane protein; PFAM: Putative ammonia monooxygenase; membrane protein AbrB 257301 10481242 Alide2_0226 Alicycliphilus denitrificans K601 membrane protein AbrB YP_004386173.1 256234 R 596154 CDS YP_004386174.1 330822871 10481244 258805..259959 1 NC_015422.1 KEGG: rme:Rmet_5425 putative butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 259959 10481244 Alide2_0228 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004386174.1 258805 D 596154 CDS YP_004386175.1 330822872 10481245 259983..260957 1 NC_015422.1 KEGG: vei:Veis_3320 hypothetical protein; hypothetical protein 260957 10481245 Alide2_0229 Alicycliphilus denitrificans K601 hypothetical protein YP_004386175.1 259983 D 596154 CDS YP_004386176.1 330822873 10481246 260954..263029 1 NC_015422.1 KEGG: dac:Daci_1885 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding; CoA-binding domain-containing protein 263029 10481246 Alide2_0230 Alicycliphilus denitrificans K601 CoA-binding domain-containing protein YP_004386176.1 260954 D 596154 CDS YP_004386177.1 330822874 10481247 263103..264215 1 NC_015422.1 PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: dia:Dtpsy_0184 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 264215 10481247 Alide2_0231 Alicycliphilus denitrificans K601 FAD linked oxidase domain-containing protein YP_004386177.1 263103 D 596154 CDS YP_004386178.1 330822875 10481248 264218..264991 1 NC_015422.1 PFAM: Protein of unknown function DUF1275; KEGG: dia:Dtpsy_0185 protein of unknown function DUF1275; hypothetical protein 264991 10481248 Alide2_0232 Alicycliphilus denitrificans K601 hypothetical protein YP_004386178.1 264218 D 596154 CDS YP_004386179.1 330822876 10481249 265028..266266 1 NC_015422.1 PFAM: Cysteine-rich domain; 4Fe-4S binding domain; KEGG: ajs:Ajs_0168 glycolate oxidase iron-sulfur subunit; hypothetical protein 266266 10481249 Alide2_0233 Alicycliphilus denitrificans K601 hypothetical protein YP_004386179.1 265028 D 596154 CDS YP_004386180.1 330822877 10481250 266329..267171 1 NC_015422.1 KEGG: dia:Dtpsy_0187 ProQ activator of osmoprotectant transporter ProP; PFAM: Fertility inhibition FinO/ProQ; SMART: Fertility inhibition FinO/ProQ; Fertility inhibition FinO-like protein 267171 10481250 Alide2_0234 Alicycliphilus denitrificans K601 Fertility inhibition FinO-like protein YP_004386180.1 266329 D 596154 CDS YP_004386181.1 330822878 10481251 complement(267229..268113) 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0174 hypothetical protein; hypothetical protein 268113 10481251 Alide2_0235 Alicycliphilus denitrificans K601 hypothetical protein YP_004386181.1 267229 R 596154 CDS YP_004386182.1 330822879 10481252 complement(268167..269444) 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0193 lysophospholipid transporter LplT; major facilitator superfamily protein 269444 10481252 Alide2_0236 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004386182.1 268167 R 596154 CDS YP_004386183.1 330822880 10481253 269588..270682 1 NC_015422.1 PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: ajs:Ajs_0176 alanine racemase; alanine racemase 270682 10481253 Alide2_0237 Alicycliphilus denitrificans K601 alanine racemase YP_004386183.1 269588 D 596154 CDS YP_004386184.1 330822881 10481254 270901..271920 1 NC_015422.1 KEGG: dia:Dtpsy_0196 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; Cytochrome c, class I; cytochrome-c peroxidase 271920 10481254 Alide2_0238 Alicycliphilus denitrificans K601 cytochrome-c peroxidase YP_004386184.1 270901 D 596154 CDS YP_004386185.1 330822882 10481255 complement(272000..272614) 1 NC_015422.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_0197 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein 272614 10481255 Alide2_0239 Alicycliphilus denitrificans K601 glutathione S-transferase domain-containing protein YP_004386185.1 272000 R 596154 CDS YP_004386186.1 330822883 10481256 272745..274127 1 NC_015422.1 TIGRFAM: DNA repair protein RadA; PFAM: Circadian clock protein KaiC/DNA repair protein RadA; KEGG: dia:Dtpsy_0199 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; DNA repair protein RadA 274127 10481256 Alide2_0240 Alicycliphilus denitrificans K601 DNA repair protein RadA YP_004386186.1 272745 D 596154 CDS YP_004386187.1 330822884 10481257 complement(274131..275117) 1 NC_015422.1 KEGG: rme:Rmet_1769 hypothetical protein; hypothetical protein 275117 10481257 Alide2_0241 Alicycliphilus denitrificans K601 hypothetical protein YP_004386187.1 274131 R 596154 CDS YP_004386188.1 330822885 10481258 complement(275142..276566) 1 NC_015422.1 PFAM: Amidase; KEGG: reh:H16_A1882 Asp-tRNA Asn / Glu-tRNA Gln amidotransferase A subunit or related amidase; amidase 276566 10481258 Alide2_0242 Alicycliphilus denitrificans K601 amidase YP_004386188.1 275142 R 596154 CDS YP_004386189.1 330822886 10481259 276732..277148 1 NC_015422.1 KEGG: ajs:Ajs_0181 hypothetical protein; hypothetical protein 277148 10481259 Alide2_0243 Alicycliphilus denitrificans K601 hypothetical protein YP_004386189.1 276732 D 596154 CDS YP_004386190.1 330822887 10481260 277193..278131 1 NC_015422.1 TIGRFAM: Branched-chain amino acid aminotransferase I; KEGG: ajs:Ajs_0182 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; branched-chain amino acid aminotransferase 278131 10481260 Alide2_0244 Alicycliphilus denitrificans K601 branched-chain amino acid aminotransferase YP_004386190.1 277193 D 596154 CDS YP_004386191.1 330822888 10481261 278139..278345 1 NC_015422.1 KEGG: ajs:Ajs_0183 hypothetical protein; hypothetical protein 278345 10481261 Alide2_0245 Alicycliphilus denitrificans K601 hypothetical protein YP_004386191.1 278139 D 596154 CDS YP_004386192.1 330822889 10481262 278420..279772 1 NC_015422.1 PFAM: O-antigen ligase-related; KEGG: ajs:Ajs_0184 O-antigen polymerase; O-antigen polymerase 279772 10481262 Alide2_0246 Alicycliphilus denitrificans K601 O-antigen polymerase YP_004386192.1 278420 D 596154 CDS YP_004386193.1 330822890 10481263 279765..280880 1 NC_015422.1 PFAM: Glycosyl transferase, group 1; KEGG: ajs:Ajs_0185 glycosyl transferase, group 1; group 1 glycosyl transferase 280880 10481263 Alide2_0247 Alicycliphilus denitrificans K601 group 1 glycosyl transferase YP_004386193.1 279765 D 596154 CDS YP_004386194.1 330822891 10481264 280877..281923 1 NC_015422.1 PFAM: Glycosyl transferase, family 2; KEGG: ajs:Ajs_0186 glycosyl transferase family protein; family 2 glycosyl transferase 281923 10481264 Alide2_0248 Alicycliphilus denitrificans K601 family 2 glycosyl transferase YP_004386194.1 280877 D 596154 CDS YP_004386195.1 330822892 10481265 281920..282894 1 NC_015422.1 KEGG: ajs:Ajs_0187 hypothetical protein; hypothetical protein 282894 10481265 Alide2_0249 Alicycliphilus denitrificans K601 hypothetical protein YP_004386195.1 281920 D 596154 CDS YP_004386196.1 330822893 10481266 complement(282963..284027) 1 NC_015422.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_0188 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 284027 10481266 Alide2_0250 Alicycliphilus denitrificans K601 2-nitropropane dioxygenase YP_004386196.1 282963 R 596154 CDS YP_004386197.1 330822894 10481267 complement(284024..284890) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0189 LysR family transcriptional regulator; LysR family transcriptional regulator 284890 10481267 Alide2_0251 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386197.1 284024 R 596154 CDS YP_004386198.1 330822895 10481268 284946..286175 1 NC_015422.1 PFAM: Domain of unknown function DUF1228; KEGG: dia:Dtpsy_0209 protein of unknown function DUF1228; hypothetical protein 286175 10481268 Alide2_0252 Alicycliphilus denitrificans K601 hypothetical protein YP_004386198.1 284946 D 596154 CDS YP_004386199.1 330822896 10481269 complement(286179..286898) 1 NC_015422.1 PFAM: Molybdenum cofactor sulfurase, C-terminal; KEGG: dia:Dtpsy_0210 MOSC domain containing protein; MOSC domain-containing protein 286898 10481269 Alide2_0253 Alicycliphilus denitrificans K601 MOSC domain-containing protein YP_004386199.1 286179 R 596154 CDS YP_004386200.1 330822897 10481270 complement(286895..287455) 1 NC_015422.1 PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: dia:Dtpsy_0211 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 287455 10481270 Alide2_0254 Alicycliphilus denitrificans K601 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_004386200.1 286895 R 596154 CDS YP_004386201.1 330822898 10481271 complement(287474..287968) 1 NC_015422.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: oca:OCAR_5014 activator of HSP90 ATPase 1 family protein; Activator of Hsp90 ATPase 1 family protein 287968 10481271 Alide2_0255 Alicycliphilus denitrificans K601 Activator of Hsp90 ATPase 1 family protein YP_004386201.1 287474 R 596154 CDS YP_004386202.1 330822899 10481272 complement(288068..288529) 1 NC_015422.1 PFAM: MaoC-like dehydratase; KEGG: dac:Daci_0013 dehydratase; MaoC domain-containing protein dehydratase 288529 10481272 Alide2_0256 Alicycliphilus denitrificans K601 MaoC domain-containing protein dehydratase YP_004386202.1 288068 R 596154 CDS YP_004386203.1 330822900 10481273 complement(288551..289522) 1 NC_015422.1 KEGG: dac:Daci_0012 hypothetical protein; hypothetical protein 289522 10481273 Alide2_0257 Alicycliphilus denitrificans K601 hypothetical protein YP_004386203.1 288551 R 596154 CDS YP_004386204.1 330822901 10481274 289676..290605 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0011 LysR family transcriptional regulator; LysR family transcriptional regulator 290605 10481274 Alide2_0258 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386204.1 289676 D 596154 CDS YP_004386205.1 330822902 10481275 290730..291896 1 NC_015422.1 KEGG: axy:AXYL_02637 CoA-transferase family III family protein 17; PFAM: CoA-transferase family III; formyl-CoA transferase 291896 10481275 Alide2_0259 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004386205.1 290730 D 596154 CDS YP_004386206.1 330822903 10481276 complement(291914..293125) 1 NC_015422.1 KEGG: dia:Dtpsy_0212 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 293125 10481276 Alide2_0260 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004386206.1 291914 R 596154 CDS YP_004386207.1 330822904 10481277 complement(293135..293845) 1 NC_015422.1 KEGG: ajs:Ajs_0194 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 293845 10481277 Alide2_0261 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004386207.1 293135 R 596154 CDS YP_004386208.1 330822905 10481278 complement(293941..295299) 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0214 major facilitator superfamily MFS_1; major facilitator superfamily protein 295299 10481278 Alide2_0262 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004386208.1 293941 R 596154 CDS YP_004386209.1 330822906 10481279 295309..295974 1 NC_015422.1 KEGG: dia:Dtpsy_0215 transcriptional regulator, AraC family; PFAM: Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC type, DNA binding domain; cupin 2 barrel domain-containing protein 295974 10481279 Alide2_0263 Alicycliphilus denitrificans K601 cupin 2 barrel domain-containing protein YP_004386209.1 295309 D 596154 CDS YP_004386210.1 330822907 10481280 296088..296981 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0201 hypothetical protein; hypothetical protein 296981 10481280 Alide2_0264 Alicycliphilus denitrificans K601 hypothetical protein YP_004386210.1 296088 D 596154 CDS YP_004386211.1 330822908 10481281 296978..297832 1 NC_015422.1 PFAM: Peptidase M48; KEGG: ajs:Ajs_0203 peptidase M48, Ste24p; peptidase M48 Ste24p 297832 10481281 Alide2_0265 Alicycliphilus denitrificans K601 peptidase M48 Ste24p YP_004386211.1 296978 D 596154 CDS YP_004386212.1 330822909 10481284 complement(298389..299144) 1 NC_015422.1 KEGG: ajs:Ajs_0204 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; GntR family transcriptional regulator 299144 10481284 Alide2_0268 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004386212.1 298389 R 596154 CDS YP_004386213.1 330822910 10481285 complement(299146..300852) 1 NC_015422.1 KEGG: lch:Lcho_3364 putative sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Activator of aromatic catabolism; Helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; SMART: ATPase, AAA+ type, core; Fis family sigma-54 specific transcriptional regulator 300852 10481285 Alide2_0269 Alicycliphilus denitrificans K601 Fis family sigma-54 specific transcriptional regulator YP_004386213.1 299146 R 596154 CDS YP_004386214.1 330822911 10481286 301084..301395 1 NC_015422.1 PFAM: Phenol hydroxylase subunit; KEGG: avn:Avin_30760 multi-component phenol hydoxylase, assembly subunit; LapK; phenol hydroxylase subunit 301395 10481286 Alide2_0270 Alicycliphilus denitrificans K601 phenol hydroxylase subunit YP_004386214.1 301084 D 596154 CDS YP_004386215.1 330822912 10481287 301439..302431 1 NC_015422.1 KEGG: azo:azo2443 phenol hydroxylase subunit P1; PFAM: Methane/phenol/toluene hydroxylase; phenol 2-monooxygenase 302431 10481287 Alide2_0271 Alicycliphilus denitrificans K601 phenol 2-monooxygenase YP_004386215.1 301439 D 596154 CDS YP_004386216.1 330822913 10481288 302454..302723 1 NC_015422.1 PFAM: Monooxygenase component MmoB/DmpM; KEGG: azo:azo2442 phenol hydrolase subunit P2; monooxygenase component MmoB/DmpM 302723 10481288 Alide2_0272 Alicycliphilus denitrificans K601 monooxygenase component MmoB/DmpM YP_004386216.1 302454 D 596154 CDS YP_004386217.1 330822914 10481289 302749..304296 1 NC_015422.1 KEGG: azo:azo2441 phenol hydroxylase subunit P3; PFAM: Methane/phenol/toluene hydroxylase; YHS; phenol 2-monooxygenase 304296 10481289 Alide2_0273 Alicycliphilus denitrificans K601 phenol 2-monooxygenase YP_004386217.1 302749 D 596154 CDS YP_004386218.1 330822915 10481290 304363..304719 1 NC_015422.1 PFAM: Phenol hydroxylase,conserved region; KEGG: rpf:Rpic12D_3551 phenol hydroxylase conserved region; phenol hydroxylase 304719 10481290 Alide2_0274 Alicycliphilus denitrificans K601 phenol hydroxylase YP_004386218.1 304363 D 596154 CDS YP_004386219.1 330822916 10481291 304790..305860 1 NC_015422.1 KEGG: azo:azo1850 phenol 2-monooxygenase; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; phenol 2-monooxygenase 305860 10481291 Alide2_0275 Alicycliphilus denitrificans K601 phenol 2-monooxygenase YP_004386219.1 304790 D 596154 CDS YP_004386220.1 330822917 10481292 305874..306215 1 NC_015422.1 PFAM: Ferredoxin; KEGG: ajs:Ajs_0217 ferredoxin; ferredoxin 306215 10481292 Alide2_0276 Alicycliphilus denitrificans K601 ferredoxin YP_004386220.1 305874 D 596154 CDS YP_004386221.1 330822918 10481293 306238..307164 1 NC_015422.1 TIGRFAM: Catechol 2,3 dioxygenase; KEGG: ajs:Ajs_0218 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; catechol 2,3 dioxygenase 307164 10481293 Alide2_0277 Alicycliphilus denitrificans K601 catechol 2,3 dioxygenase YP_004386221.1 306238 D 596154 CDS YP_004386222.1 330822919 10481294 307164..307595 1 NC_015422.1 PFAM: Domain of unknown function DUF336; KEGG: ajs:Ajs_0219 hypothetical protein; hypothetical protein 307595 10481294 Alide2_0278 Alicycliphilus denitrificans K601 hypothetical protein YP_004386222.1 307164 D 596154 CDS YP_004386223.1 330822920 10481295 307608..308504 1 NC_015422.1 KEGG: ctt:CtCNB1_3154 ZorfX; hypothetical protein 308504 10481295 Alide2_0279 Alicycliphilus denitrificans K601 hypothetical protein YP_004386223.1 307608 D 596154 CDS YP_004386224.1 330822921 10481296 309275..310735 1 NC_015422.1 TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; KEGG: ajs:Ajs_0220 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; 2-hydroxymuconic semialdehyde dehydrogenase 310735 10481296 Alide2_0280 Alicycliphilus denitrificans K601 2-hydroxymuconic semialdehyde dehydrogenase YP_004386224.1 309275 D 596154 CDS YP_004386225.1 330822922 10481297 310797..311660 1 NC_015422.1 KEGG: ctt:CtCNB1_3150 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; 2,6-dioxo-6-phenylhexa-3-enoate hydrolase 311660 10481297 Alide2_0281 Alicycliphilus denitrificans K601 2,6-dioxo-6-phenylhexa-3-enoate hydrolase YP_004386225.1 310797 D 596154 CDS YP_004386226.1 330822923 10481298 311665..312447 1 NC_015422.1 TIGRFAM: 2-oxopent-4-enoate hydratase; KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like; 2-oxopent-4-enoate hydratase 312447 10481298 Alide2_0282 Alicycliphilus denitrificans K601 2-oxopent-4-enoate hydratase YP_004386226.1 311665 D 596154 CDS YP_004386227.1 330822924 10481299 312466..313380 1 NC_015422.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Acetaldehyde dehydrogenase; KEGG: ajs:Ajs_0223 acetaldehyde dehydrogenase; PFAM: Acetaldehyde dehydrogenase, C-terminal; Semialdehyde dehydrogenase, NAD-binding; acetaldehyde dehydrogenase 313380 10481299 Alide2_0283 Alicycliphilus denitrificans K601 acetaldehyde dehydrogenase YP_004386227.1 312466 D 596154 CDS YP_004386228.1 330822925 10481300 313395..314432 1 NC_015422.1 TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; KEGG: ajs:Ajs_0224 4-hydroxy-2-ketovalerate aldolase; PFAM: Pyruvate carboxyltransferase; DmpG-like communication; 4-hydroxy-2-oxovalerate aldolase 314432 10481300 Alide2_0284 Alicycliphilus denitrificans K601 4-hydroxy-2-oxovalerate aldolase YP_004386228.1 313395 D 596154 CDS YP_004386229.1 330822926 10481301 314466..315254 1 NC_015422.1 TIGRFAM: 4-oxalocrotonate decarboxylase; KEGG: ajs:Ajs_0225 4-oxalocrotonate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like; 4-oxalocrotonate decarboxylase 315254 10481301 Alide2_0285 Alicycliphilus denitrificans K601 4-oxalocrotonate decarboxylase YP_004386229.1 314466 D 596154 CDS YP_004386230.1 330822927 10481302 315295..316263 1 NC_015422.1 KEGG: ctt:CtCNB1_3145 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 316263 10481302 Alide2_0286 Alicycliphilus denitrificans K601 twin-arginine translocation pathway signal protein YP_004386230.1 315295 D 596154 CDS YP_004386231.1 330822928 10481303 316290..316481 1 NC_015422.1 KEGG: ajs:Ajs_0227 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase, bacteria/archaea; PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 316481 10481303 Alide2_0287 Alicycliphilus denitrificans K601 4-oxalocrotonate tautomerase YP_004386231.1 316290 D 596154 CDS YP_004386232.1 330822929 10481304 complement(316546..317184) 1 NC_015422.1 KEGG: ajs:Ajs_0228 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 317184 10481304 Alide2_0288 Alicycliphilus denitrificans K601 beta-lactamase domain-containing protein YP_004386232.1 316546 R 596154 CDS YP_004386233.1 330822930 10481305 complement(317250..318002) 1 NC_015422.1 KEGG: dac:Daci_4281 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 318002 10481305 Alide2_0289 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004386233.1 317250 R 596154 CDS YP_004386234.1 330822931 10481306 318127..319107 1 NC_015422.1 KEGG: dac:Daci_4280 hypothetical protein; hypothetical protein 319107 10481306 Alide2_0290 Alicycliphilus denitrificans K601 hypothetical protein YP_004386234.1 318127 D 596154 CDS YP_004386235.1 330822932 10481307 319115..319987 1 NC_015422.1 PFAM: Amidohydrolase 2; KEGG: dac:Daci_4279 amidohydrolase 2; amidohydrolase 2 319987 10481307 Alide2_0291 Alicycliphilus denitrificans K601 amidohydrolase 2 YP_004386235.1 319115 D 596154 CDS YP_004386236.1 330822933 10481308 320010..320999 1 NC_015422.1 KEGG: dac:Daci_4278 hypothetical protein; hypothetical protein 320999 10481308 Alide2_0292 Alicycliphilus denitrificans K601 hypothetical protein YP_004386236.1 320010 D 596154 CDS YP_004386237.1 330822934 10481309 321032..321718 1 NC_015422.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4277 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 321718 10481309 Alide2_0293 Alicycliphilus denitrificans K601 dimethylmenaquinone methyltransferase YP_004386237.1 321032 D 596154 CDS YP_004386238.1 330822935 10481310 321715..322632 1 NC_015422.1 KEGG: vap:Vapar_5586 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase 322632 10481310 Alide2_0294 Alicycliphilus denitrificans K601 phosphoglycerate dehydrogenase YP_004386238.1 321715 D 596154 CDS YP_004386239.1 330822936 10481311 322657..323646 1 NC_015422.1 KEGG: vap:Vapar_3894 hypothetical protein; hypothetical protein 323646 10481311 Alide2_0295 Alicycliphilus denitrificans K601 hypothetical protein YP_004386239.1 322657 D 596154 CDS YP_004386240.1 330822937 10481312 323993..324949 1 NC_015422.1 KEGG: dac:Daci_4274 hypothetical protein; hypothetical protein 324949 10481312 Alide2_0296 Alicycliphilus denitrificans K601 hypothetical protein YP_004386240.1 323993 D 596154 CDS YP_004386241.1 330822938 10481313 324955..325830 1 NC_015422.1 PFAM: Amidohydrolase 2; KEGG: dac:Daci_4273 amidohydrolase 2; amidohydrolase 2 325830 10481313 Alide2_0297 Alicycliphilus denitrificans K601 amidohydrolase 2 YP_004386241.1 324955 D 596154 CDS YP_004386242.1 330822939 10481314 325843..326760 1 NC_015422.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain-containing protein; SMP-30/gluconolaconase/LRE-like region-containing protein 326760 10481314 Alide2_0298 Alicycliphilus denitrificans K601 SMP-30/gluconolaconase/LRE-like region-containing protein YP_004386242.1 325843 D 596154 CDS YP_004386243.1 330822940 10481315 complement(326772..327755) 1 NC_015422.1 KEGG: rme:Rmet_4433 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor 327755 10481315 Alide2_0299 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor YP_004386243.1 326772 R 596154 CDS YP_004386244.1 330822941 10481316 complement(327774..328667) 1 NC_015422.1 KEGG: vei:Veis_2089 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 328667 10481316 Alide2_0300 Alicycliphilus denitrificans K601 3-hydroxyisobutyrate dehydrogenase YP_004386244.1 327774 R 596154 CDS YP_004386245.1 330822942 10481317 complement(328690..330141) 1 NC_015422.1 KEGG: vei:Veis_2088 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; betaine aldehyde dehydrogenase 330141 10481317 Alide2_0301 Alicycliphilus denitrificans K601 betaine aldehyde dehydrogenase YP_004386245.1 328690 R 596154 CDS YP_004386246.1 330822943 10481318 complement(330336..331064) 1 NC_015422.1 KEGG: rme:Rmet_4432 IclR family transcriptional regulator family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 331064 10481318 Alide2_0302 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004386246.1 330336 R 596154 CDS YP_004386247.1 330822944 10481319 331337..331741 1 NC_015422.1 KEGG: axy:AXYL_03188 hypothetical protein; hypothetical protein 331741 10481319 Alide2_0303 Alicycliphilus denitrificans K601 hypothetical protein YP_004386247.1 331337 D 596154 CDS YP_004386248.1 330822945 10481320 331762..332610 1 NC_015422.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: axy:AXYL_03189 alpha/beta hydrolase fold family protein 10; alpha/beta fold family hydrolase 332610 10481320 Alide2_0304 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004386248.1 331762 D 596154 CDS YP_004386249.1 330822946 10481321 332665..333819 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: bav:BAV0983 ABC transporter, substrate-binding protein; extracellular ligand-binding receptor 333819 10481321 Alide2_0305 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004386249.1 332665 D 596154 CDS YP_004386250.1 330822947 10481322 333841..334710 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: bav:BAV0982 ABC transporter, permease protein; ABC transporter permease 334710 10481322 Alide2_0306 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386250.1 333841 D 596154 CDS YP_004386251.1 330822948 10481323 334715..335713 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dma:DMR_11370 ABC transporter permease protein; ABC transporter permease 335713 10481323 Alide2_0307 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386251.1 334715 D 596154 CDS YP_004386252.1 330822949 10481324 335710..336489 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: pth:PTH_2348 ABC-type branched-chain amino acid transport systems, ATPase component; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase 336489 10481324 Alide2_0308 Alicycliphilus denitrificans K601 sulfate-transporting ATPase YP_004386252.1 335710 D 596154 CDS YP_004386253.1 330822950 10481325 336476..337189 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: oan:Oant_4420 ABC transporter related; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase 337189 10481325 Alide2_0309 Alicycliphilus denitrificans K601 Fe(3+)-transporting ATPase YP_004386253.1 336476 D 596154 CDS YP_004386254.1 330822951 10481326 337192..338214 1 NC_015422.1 PFAM: Amidohydrolase 2; KEGG: bbr:BB2353 hypothetical protein; amidohydrolase 2 338214 10481326 Alide2_0310 Alicycliphilus denitrificans K601 amidohydrolase 2 YP_004386254.1 337192 D 596154 CDS YP_004386255.1 330822952 10481327 complement(338199..338930) 1 NC_015422.1 KEGG: ajs:Ajs_0229 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; GntR family transcriptional regulator 338930 10481327 Alide2_0311 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004386255.1 338199 R 596154 CDS YP_004386256.1 330822953 10481328 339014..340216 1 NC_015422.1 KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 340216 10481328 Alide2_0312 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004386256.1 339014 D 596154 CDS YP_004386257.1 330822954 10481329 340213..340986 1 NC_015422.1 KEGG: dia:Dtpsy_0225 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 340986 10481329 Alide2_0313 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004386257.1 340213 D 596154 CDS YP_004386258.1 330822955 10481330 340983..342023 1 NC_015422.1 PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 342023 10481330 Alide2_0314 Alicycliphilus denitrificans K601 aminoglycoside phosphotransferase YP_004386258.1 340983 D 596154 CDS YP_004386259.1 330822956 10481331 complement(342121..342921) 1 NC_015422.1 TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: dia:Dtpsy_0227 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 342921 10481331 Alide2_0315 Alicycliphilus denitrificans K601 exodeoxyribonuclease III Xth YP_004386259.1 342121 R 596154 CDS YP_004386260.1 330822957 10481332 342932..343630 1 NC_015422.1 TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: dia:Dtpsy_0228 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; orotate phosphoribosyltransferase 343630 10481332 Alide2_0316 Alicycliphilus denitrificans K601 orotate phosphoribosyltransferase YP_004386260.1 342932 D 596154 CDS YP_004386261.1 330822958 10481333 343651..344355 1 NC_015422.1 KEGG: dia:Dtpsy_0229 hypothetical protein; hypothetical protein 344355 10481333 Alide2_0317 Alicycliphilus denitrificans K601 hypothetical protein YP_004386261.1 343651 D 596154 CDS YP_004386262.1 330822959 10481334 complement(344424..345869) 1 NC_015422.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; KEGG: dac:Daci_0351 glutamyl-tRNA(Gln) amidotransferase subunit B; SMART: Asn/Gln amidotransferase; glutamyl-tRNA(Gln) amidotransferase subunit B 345869 10481334 Alide2_0318 Alicycliphilus denitrificans K601 glutamyl-tRNA(Gln) amidotransferase subunit B YP_004386262.1 344424 R 596154 CDS YP_004386263.1 330822960 10481335 complement(345872..347362) 1 NC_015422.1 PFAM: Amidase; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: ajs:Ajs_0237 aspartyl/glutamyl-tRNA amidotransferase subunit A; glutamyl-tRNA(Gln) amidotransferase subunit A 347362 10481335 Alide2_0319 Alicycliphilus denitrificans K601 glutamyl-tRNA(Gln) amidotransferase subunit A YP_004386263.1 345872 R 596154 CDS YP_004386264.1 330822961 10481336 complement(347359..347658) 1 NC_015422.1 KEGG: aav:Aave_0293 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 347658 10481336 Alide2_0320 Alicycliphilus denitrificans K601 glutamyl-tRNA(Gln) amidotransferase subunit C YP_004386264.1 347359 R 596154 CDS YP_004386265.1 330822962 10481337 347864..348907 1 NC_015422.1 KEGG: dia:Dtpsy_0233 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl; MreB/Mrl family cell shape determining protein 348907 10481337 Alide2_0321 Alicycliphilus denitrificans K601 MreB/Mrl family cell shape determining protein YP_004386265.1 347864 D 596154 CDS YP_004386266.1 330822963 10481338 348937..349854 1 NC_015422.1 KEGG: ajs:Ajs_0240 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC; rod shape-determining protein MreC 349854 10481338 Alide2_0322 Alicycliphilus denitrificans K601 rod shape-determining protein MreC YP_004386266.1 348937 D 596154 CDS YP_004386267.1 330822964 10481339 349851..350372 1 NC_015422.1 KEGG: ajs:Ajs_0241 putative rod shape-determining MreD transmembrane protein; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD; rod shape-determining protein MreD 350372 10481339 Alide2_0323 Alicycliphilus denitrificans K601 rod shape-determining protein MreD YP_004386267.1 349851 D 596154 CDS YP_004386268.1 330822965 10481340 350389..352332 1 NC_015422.1 TIGRFAM: Penicillin-binding protein 2; KEGG: dia:Dtpsy_0236 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; penicillin-binding protein 2 352332 10481340 Alide2_0324 Alicycliphilus denitrificans K601 penicillin-binding protein 2 YP_004386268.1 350389 D 596154 CDS YP_004386269.1 330822966 10481341 complement(352348..353259) 1 NC_015422.1 TIGRFAM: Arginase, subgroup; KEGG: dia:Dtpsy_0241 arginase; PFAM: Ureohydrolase; arginase 353259 10481341 Alide2_0325 Alicycliphilus denitrificans K601 arginase YP_004386269.1 352348 R 596154 CDS YP_004386270.1 330822967 10481342 complement(353273..354031) 1 NC_015422.1 PFAM: Protein of unknown function DUF81; KEGG: aav:Aave_0304 hypothetical protein; hypothetical protein 354031 10481342 Alide2_0326 Alicycliphilus denitrificans K601 hypothetical protein YP_004386270.1 353273 R 596154 CDS YP_004386271.1 330822968 10481343 complement(354278..355960) 1 NC_015422.1 KEGG: ajs:Ajs_0249 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; choline dehydrogenase 355960 10481343 Alide2_0327 Alicycliphilus denitrificans K601 choline dehydrogenase YP_004386271.1 354278 R 596154 CDS YP_004386272.1 330822969 10481344 356227..357345 1 NC_015422.1 KEGG: ajs:Ajs_0250 hypothetical protein; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140; hypothetical protein 357345 10481344 Alide2_0328 Alicycliphilus denitrificans K601 hypothetical protein YP_004386272.1 356227 D 596154 CDS YP_004386273.1 330822970 10481345 357348..358151 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_0251 ABC transporter related; SMART: ATPase, AAA+ type, core; polyamine-transporting ATPase 358151 10481345 Alide2_0329 Alicycliphilus denitrificans K601 polyamine-transporting ATPase YP_004386273.1 357348 D 596154 CDS YP_004386274.1 330822971 10481346 358151..359128 1 NC_015422.1 PFAM: Mammalian cell entry-related; KEGG: dia:Dtpsy_0246 mammalian cell entry related domain protein; mammalian cell entry domain-containing protein 359128 10481346 Alide2_0330 Alicycliphilus denitrificans K601 mammalian cell entry domain-containing protein YP_004386274.1 358151 D 596154 CDS YP_004386275.1 330822972 10481347 359139..359819 1 NC_015422.1 KEGG: ajs:Ajs_0253 putative lipoprotein; manually curated; PFAM: Protein of unknown function DUF330; hypothetical protein 359819 10481347 Alide2_0331 Alicycliphilus denitrificans K601 hypothetical protein YP_004386275.1 359139 D 596154 CDS YP_004386276.1 330822973 10481349 360273..361202 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bph:Bphy_6198 LysR family transcriptional regulator; LysR family transcriptional regulator 361202 10481349 Alide2_0333 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386276.1 360273 D 596154 CDS YP_004386277.1 330822974 10481350 361283..363292 1 NC_015422.1 PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; KEGG: cti:RALTA_B0856 putative hydrolyase; aconitate hydratase domain-containing protein 363292 10481350 Alide2_0334 Alicycliphilus denitrificans K601 aconitate hydratase domain-containing protein YP_004386277.1 361283 D 596154 CDS YP_004386278.1 330822975 10481351 363330..364319 1 NC_015422.1 KEGG: cti:RALTA_B0858 conserved hypothetical protein; UPF0065; hypothetical protein 364319 10481351 Alide2_0335 Alicycliphilus denitrificans K601 hypothetical protein YP_004386278.1 363330 D 596154 CDS YP_004386279.1 330822976 10481352 364328..364861 1 NC_015422.1 KEGG: mmi:MMAR_5403 ribonuclease activity regulator protein RraA; TIGRFAM: Ribonuclease E inhibitor RraA; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; ribonuclease activity A regulator 364861 10481352 Alide2_0336 Alicycliphilus denitrificans K601 ribonuclease activity A regulator YP_004386279.1 364328 D 596154 CDS YP_004386280.1 330822977 10481353 complement(364812..365447) 1 NC_015422.1 KEGG: dia:Dtpsy_0253 multiple antibiotic resistance (MarC)-related protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related; multiple antibiotic resistance (MarC)-like protein 365447 10481353 Alide2_0337 Alicycliphilus denitrificans K601 multiple antibiotic resistance (MarC)-like protein YP_004386280.1 364812 R 596154 CDS YP_004386281.1 330822978 10481354 365561..366250 1 NC_015422.1 KEGG: dia:Dtpsy_0255 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase; carboxymethylenebutenolidase 366250 10481354 Alide2_0338 Alicycliphilus denitrificans K601 carboxymethylenebutenolidase YP_004386281.1 365561 D 596154 CDS YP_004386282.1 330822979 10481355 complement(366314..367882) 1 NC_015422.1 KEGG: dia:Dtpsy_0256 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; EmrB/QacA subfamily drug resistance transporter 367882 10481355 Alide2_0339 Alicycliphilus denitrificans K601 EmrB/QacA subfamily drug resistance transporter YP_004386282.1 366314 R 596154 CDS YP_004386283.1 330822980 10481356 complement(367885..369084) 1 NC_015422.1 PFAM: Secretion protein HlyD; KEGG: ajs:Ajs_0262 secretion protein HlyD family protein; secretion protein HlyD family protein 369084 10481356 Alide2_0340 Alicycliphilus denitrificans K601 secretion protein HlyD family protein YP_004386283.1 367885 R 596154 CDS YP_004386284.1 330822981 10481357 complement(369119..370540) 1 NC_015422.1 KEGG: dia:Dtpsy_0258 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 370540 10481357 Alide2_0341 Alicycliphilus denitrificans K601 NodT family RND efflux system outer membrane lipoprotein YP_004386284.1 369119 R 596154 CDS YP_004386285.1 330822982 10481358 complement(370570..371082) 1 NC_015422.1 KEGG: ajs:Ajs_0264 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; MarR family transcriptional regulator 371082 10481358 Alide2_0342 Alicycliphilus denitrificans K601 MarR family transcriptional regulator YP_004386285.1 370570 R 596154 CDS YP_004386286.1 330822983 10481359 complement(371154..372329) 1 NC_015422.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: dia:Dtpsy_0260 Mg2 transporter protein CorA family protein; Mg2 transporter protein CorA family protein 372329 10481359 Alide2_0343 Alicycliphilus denitrificans K601 Mg2 transporter protein CorA family protein YP_004386286.1 371154 R 596154 CDS YP_004386287.1 330822984 10481360 complement(372369..373397) 1 NC_015422.1 KEGG: ajs:Ajs_0266 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; porphobilinogen synthase 373397 10481360 Alide2_0344 Alicycliphilus denitrificans K601 porphobilinogen synthase YP_004386287.1 372369 R 596154 CDS YP_004386288.1 330822985 10481361 373430..374152 1 NC_015422.1 PFAM: Biotin/lipoate A/B protein ligase; KEGG: dia:Dtpsy_0262 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase 374152 10481361 Alide2_0345 Alicycliphilus denitrificans K601 biotin/lipoate A/B protein ligase YP_004386288.1 373430 D 596154 CDS YP_004386289.1 330822986 10481362 374300..374728 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0093; KEGG: dia:Dtpsy_0263 hypothetical protein; hypothetical protein 374728 10481362 Alide2_0346 Alicycliphilus denitrificans K601 hypothetical protein YP_004386289.1 374300 D 596154 CDS YP_004386290.1 330822987 10481363 374754..375851 1 NC_015422.1 PFAM: VanZ-like; KEGG: ajs:Ajs_0269 VanZ family protein; VanZ family protein 375851 10481363 Alide2_0347 Alicycliphilus denitrificans K601 VanZ family protein YP_004386290.1 374754 D 596154 CDS YP_004386291.1 330822988 10481364 375861..376202 1 NC_015422.1 KEGG: dia:Dtpsy_0265 ferredoxin-like protein; ferredoxin-like protein 376202 10481364 Alide2_0348 Alicycliphilus denitrificans K601 ferredoxin-like protein YP_004386291.1 375861 D 596154 CDS YP_004386292.1 330822989 10481365 376286..376921 1 NC_015422.1 KEGG: dia:Dtpsy_0266 putative transmembrane protein; transmembrane protein 376921 10481365 Alide2_0349 Alicycliphilus denitrificans K601 transmembrane protein YP_004386292.1 376286 D 596154 CDS YP_004386293.1 330822990 10481366 377023..378186 1 NC_015422.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: ajs:Ajs_0272 penicillin-binding protein 6; SMART: Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; beta-lactamase 378186 10481366 Alide2_0350 Alicycliphilus denitrificans K601 beta-lactamase YP_004386293.1 377023 D 596154 CDS YP_004386294.1 330822991 10481367 378288..378665 1 NC_015422.1 KEGG: dia:Dtpsy_0268 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacteria; PFAM: Ribosomal protein S12/S23; 30S ribosomal protein S12 378665 10481367 Alide2_0351 Alicycliphilus denitrificans K601 30S ribosomal protein S12 YP_004386294.1 378288 D 596154 CDS YP_004386295.1 330822992 10481368 378829..379302 1 NC_015422.1 KEGG: xtr:100494042 30S ribosomal protein S7-like; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7; 30S ribosomal protein S7 379302 10481368 Alide2_0352 Alicycliphilus denitrificans K601 30S ribosomal protein S7 YP_004386295.1 378829 D 596154 CDS YP_004386296.1 330822993 10481369 379389..381497 1 NC_015422.1 TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: ajs:Ajs_0275 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; translation elongation factor G 381497 10481369 Alide2_0353 Alicycliphilus denitrificans K601 translation elongation factor G YP_004386296.1 379389 D 596154 CDS YP_004386297.1 330822994 10481370 381731..382921 1 NC_015422.1 KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, C-terminal; Translation elongation factor EFTu/EF1A, domain 2; translation elongation factor Tu 382921 10481370 Alide2_0354 Alicycliphilus denitrificans K601 translation elongation factor Tu YP_004386297.1 381731 D 596154 CDS YP_004386298.1 330822995 10481371 382949..383260 1 NC_015422.1 TIGRFAM: Ribosomal protein S10 subgroup; HAMAP: Ribosomal protein S10 subgroup; KEGG: vei:Veis_1263 30S ribosomal protein S10; PFAM: Ribosomal protein S10; 30S ribosomal protein S10 383260 10481371 Alide2_0355 Alicycliphilus denitrificans K601 30S ribosomal protein S10 YP_004386298.1 382949 D 596154 CDS YP_004386299.1 330822996 10481372 383477..384151 1 NC_015422.1 KEGG: dia:Dtpsy_0273 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3; 50S ribosomal protein L3 384151 10481372 Alide2_0356 Alicycliphilus denitrificans K601 50S ribosomal protein L3 YP_004386299.1 383477 D 596154 CDS YP_004386300.1 330822997 10481373 384151..384771 1 NC_015422.1 PFAM: Ribosomal protein L4/L1e; KEGG: dia:Dtpsy_0274 50S ribosomal protein L4; 50S ribosomal protein L4 384771 10481373 Alide2_0357 Alicycliphilus denitrificans K601 50S ribosomal protein L4 YP_004386300.1 384151 D 596154 CDS YP_004386301.1 330822998 10481374 384768..385082 1 NC_015422.1 PFAM: Ribosomal protein L25/L23; KEGG: dia:Dtpsy_0275 50S ribosomal protein L23; 50S ribosomal protein L25 385082 10481374 Alide2_0358 Alicycliphilus denitrificans K601 50S ribosomal protein L25 YP_004386301.1 384768 D 596154 CDS YP_004386302.1 330822999 10481375 385085..385909 1 NC_015422.1 KEGG: dia:Dtpsy_0276 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain; 50S ribosomal protein L2 385909 10481375 Alide2_0359 Alicycliphilus denitrificans K601 50S ribosomal protein L2 YP_004386302.1 385085 D 596154 CDS YP_004386303.1 330823000 10481376 385920..386195 1 NC_015422.1 KEGG: xtr:100486557 30S ribosomal protein S19-like; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15; 30S ribosomal protein S19 386195 10481376 Alide2_0360 Alicycliphilus denitrificans K601 30S ribosomal protein S19 YP_004386303.1 385920 D 596154 CDS YP_004386304.1 330823001 10481377 386205..386537 1 NC_015422.1 KEGG: dac:Daci_0396 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17; 50S ribosomal protein L22 386537 10481377 Alide2_0361 Alicycliphilus denitrificans K601 50S ribosomal protein L22 YP_004386304.1 386205 D 596154 CDS YP_004386305.1 330823002 10481378 386555..387427 1 NC_015422.1 TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: aav:Aave_0344 30S ribosomal protein S3; SMART: K Homology; 30S ribosomal protein S3 387427 10481378 Alide2_0362 Alicycliphilus denitrificans K601 30S ribosomal protein S3 YP_004386305.1 386555 D 596154 CDS YP_004386306.1 330823003 10481379 387430..387846 1 NC_015422.1 KEGG: dia:Dtpsy_0280 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; 50S ribosomal protein L16 387846 10481379 Alide2_0363 Alicycliphilus denitrificans K601 50S ribosomal protein L16 YP_004386306.1 387430 D 596154 CDS YP_004386307.1 330823004 10481380 387858..388055 1 NC_015422.1 KEGG: dia:Dtpsy_0281 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29; 50S ribosomal protein L29 388055 10481380 Alide2_0364 Alicycliphilus denitrificans K601 50S ribosomal protein L29 YP_004386307.1 387858 D 596154 CDS YP_004386308.1 330823005 10481381 388069..388338 1 NC_015422.1 KEGG: dia:Dtpsy_0282 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17; 30S ribosomal protein S17 388338 10481381 Alide2_0365 Alicycliphilus denitrificans K601 30S ribosomal protein S17 YP_004386308.1 388069 D 596154 CDS YP_004386309.1 330823006 10481382 388418..388924 1 NC_015422.1 PFAM: Redoxin; KEGG: ajs:Ajs_0288 redoxin domain-containing protein; redoxin domain-containing protein 388924 10481382 Alide2_0366 Alicycliphilus denitrificans K601 redoxin domain-containing protein YP_004386309.1 388418 D 596154 CDS YP_004386310.1 330823007 10481383 complement(389030..389578) 1 NC_015422.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dia:Dtpsy_0284 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 389578 10481383 Alide2_0367 Alicycliphilus denitrificans K601 N-acetyltransferase GCN5 YP_004386310.1 389030 R 596154 CDS YP_004386311.1 330823008 10481384 complement(389593..390321) 1 NC_015422.1 KEGG: dia:Dtpsy_0285 cytochrome b561; cytochrome b561 390321 10481384 Alide2_0368 Alicycliphilus denitrificans K601 cytochrome b561 YP_004386311.1 389593 R 596154 CDS YP_004386312.1 330823009 10481385 complement(390570..391073) 1 NC_015422.1 PFAM: Redoxin; KEGG: dia:Dtpsy_0287 redoxin domain protein; redoxin domain-containing protein 391073 10481385 Alide2_0369 Alicycliphilus denitrificans K601 redoxin domain-containing protein YP_004386312.1 390570 R 596154 CDS YP_004386313.1 330823010 10481386 391146..391796 1 NC_015422.1 KEGG: dia:Dtpsy_0288 hypothetical protein; hypothetical protein 391796 10481386 Alide2_0370 Alicycliphilus denitrificans K601 hypothetical protein YP_004386313.1 391146 D 596154 CDS YP_004386314.1 330823011 10481387 391818..392228 1 NC_015422.1 PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: ajs:Ajs_0295 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 392228 10481387 Alide2_0371 Alicycliphilus denitrificans K601 PTS system fructose subfamily transporter subunit IIA YP_004386314.1 391818 D 596154 CDS YP_004386315.1 330823012 10481388 392225..392494 1 NC_015422.1 KEGG: dia:Dtpsy_0291 phosphocarrier, HPr family; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr 392494 10481388 Alide2_0372 Alicycliphilus denitrificans K601 phosphotransferase system, phosphocarrier protein HPr YP_004386315.1 392225 D 596154 CDS YP_004386316.1 330823013 10481389 392513..394279 1 NC_015422.1 TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: ajs:Ajs_0297 phosphoenolpyruvate--protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain; phosphoenolpyruvate-protein phosphotransferase 394279 10481389 Alide2_0373 Alicycliphilus denitrificans K601 phosphoenolpyruvate-protein phosphotransferase YP_004386316.1 392513 D 596154 CDS YP_004386317.1 330823014 10481390 complement(394346..395326) 1 NC_015422.1 KEGG: dia:Dtpsy_0293 lipoyl synthase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB; lipoyl synthase 395326 10481390 Alide2_0374 Alicycliphilus denitrificans K601 lipoyl synthase YP_004386317.1 394346 R 596154 CDS YP_004386318.1 330823015 10481391 complement(395344..396036) 1 NC_015422.1 TIGRFAM: Octanoyltransferase; KEGG: ajs:Ajs_0299 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; lipoate-protein ligase B 396036 10481391 Alide2_0375 Alicycliphilus denitrificans K601 lipoate-protein ligase B YP_004386318.1 395344 R 596154 CDS YP_004386319.1 330823016 10481392 complement(396048..396344) 1 NC_015422.1 PFAM: Protein of unknown function DUF493; KEGG: dia:Dtpsy_0295 protein of unknown function DUF493; hypothetical protein 396344 10481392 Alide2_0376 Alicycliphilus denitrificans K601 hypothetical protein YP_004386319.1 396048 R 596154 CDS YP_004386320.1 330823017 10481393 396628..397020 1 NC_015422.1 PFAM: ATPase, F0 complex, subunit I; KEGG: aav:Aave_0365 putative ATP synthase protein I; ATP synthase I subunit 397020 10481393 Alide2_0377 Alicycliphilus denitrificans K601 ATP synthase I subunit YP_004386320.1 396628 D 596154 CDS YP_004386321.1 330823018 10481394 397043..397906 1 NC_015422.1 KEGG: dia:Dtpsy_0297 F0F1 ATP synthase subunit A; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATPase, F0 complex, subunit A; ATP synthase F0 subunit A 397906 10481394 Alide2_0378 Alicycliphilus denitrificans K601 ATP synthase F0 subunit A YP_004386321.1 397043 D 596154 CDS YP_004386322.1 330823019 10481395 397958..398206 1 NC_015422.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: dac:Daci_0415 F0F1 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C; ATP synthase subunit c 398206 10481395 Alide2_0379 Alicycliphilus denitrificans K601 ATP synthase subunit c YP_004386322.1 397958 D 596154 CDS YP_004386323.1 330823020 10481396 398245..398715 1 NC_015422.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: dia:Dtpsy_0299 F0F1 ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; ATP synthase subunit b 398715 10481396 Alide2_0380 Alicycliphilus denitrificans K601 ATP synthase subunit b YP_004386323.1 398245 D 596154 CDS YP_004386324.1 330823021 10481397 398734..399276 1 NC_015422.1 KEGG: dia:Dtpsy_0300 F0F1 ATP synthase subunit delta; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit; ATP synthase F1 subunit delta 399276 10481397 Alide2_0381 Alicycliphilus denitrificans K601 ATP synthase F1 subunit delta YP_004386324.1 398734 D 596154 CDS YP_004386325.1 330823022 10481398 399322..400881 1 NC_015422.1 KEGG: aav:Aave_0370 F0F1 ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATP synthase F1 subunit alpha 400881 10481398 Alide2_0382 Alicycliphilus denitrificans K601 ATP synthase F1 subunit alpha YP_004386325.1 399322 D 596154 CDS YP_004386326.1 330823023 10481399 400900..401766 1 NC_015422.1 KEGG: dia:Dtpsy_0302 F0F1 ATP synthase subunit gamma; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit; ATP synthase F1 subunit gamma 401766 10481399 Alide2_0383 Alicycliphilus denitrificans K601 ATP synthase F1 subunit gamma YP_004386326.1 400900 D 596154 CDS YP_004386327.1 330823024 10481400 401795..403204 1 NC_015422.1 TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: dia:Dtpsy_0303 F0F1 ATP synthase subunit beta; SMART: ATPase, AAA+ type, core; ATP synthase F1 subunit beta 403204 10481400 Alide2_0384 Alicycliphilus denitrificans K601 ATP synthase F1 subunit beta YP_004386327.1 401795 D 596154 CDS YP_004386328.1 330823025 10481401 403279..403695 1 NC_015422.1 KEGG: dia:Dtpsy_0304 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal; ATP synthase F1 subunit epsilon 403695 10481401 Alide2_0385 Alicycliphilus denitrificans K601 ATP synthase F1 subunit epsilon YP_004386328.1 403279 D 596154 CDS YP_004386329.1 330823026 10481402 403901..404329 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein 404329 10481402 Alide2_0386 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004386329.1 403901 D 596154 CDS YP_004386330.1 330823027 10481403 404326..404658 1 NC_015422.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 404658 10481403 Alide2_0387 Alicycliphilus denitrificans K601 IS66 Orf2 family protein YP_004386330.1 404326 D 596154 CDS YP_004386331.1 330823028 10481404 404741..406255 1 NC_015422.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66 406255 10481404 Alide2_0388 Alicycliphilus denitrificans K601 transposase IS66 YP_004386331.1 404741 D 596154 CDS YP_004386332.1 330823029 10481408 complement(409186..409719) 1 NC_015422.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein; hypothetical protein 409719 10481408 Alide2_0392 Alicycliphilus denitrificans K601 hypothetical protein YP_004386332.1 409186 R 596154 CDS YP_004386333.1 330823030 10481409 complement(409734..410621) 1 NC_015422.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein; hypothetical protein 410621 10481409 Alide2_0393 Alicycliphilus denitrificans K601 hypothetical protein YP_004386333.1 409734 R 596154 CDS YP_004386334.1 330823031 10481410 complement(410625..411230) 1 NC_015422.1 PFAM: LemA; KEGG: aav:Aave_0381 LemA family protein; LemA family protein 411230 10481410 Alide2_0394 Alicycliphilus denitrificans K601 LemA family protein YP_004386334.1 410625 R 596154 CDS YP_004386335.1 330823032 10481411 411351..411818 1 NC_015422.1 KEGG: dia:Dtpsy_0312 hypothetical protein; hypothetical protein 411818 10481411 Alide2_0395 Alicycliphilus denitrificans K601 hypothetical protein YP_004386335.1 411351 D 596154 CDS YP_004386336.1 330823033 10481412 411864..412400 1 NC_015422.1 PFAM: Protein of unknown function DUF2944; KEGG: ajs:Ajs_0319 hypothetical protein; hypothetical protein 412400 10481412 Alide2_0396 Alicycliphilus denitrificans K601 hypothetical protein YP_004386336.1 411864 D 596154 CDS YP_004386337.1 330823034 10481413 complement(412556..413392) 1 NC_015422.1 PFAM: Cytochrome c, class I; KEGG: aav:Aave_0385 cytochrome c, class I; cytochrome c class I 413392 10481413 Alide2_0397 Alicycliphilus denitrificans K601 cytochrome c class I YP_004386337.1 412556 R 596154 CDS YP_004386338.1 330823035 10481414 complement(413522..414967) 1 NC_015422.1 KEGG: dia:Dtpsy_0316 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 414967 10481414 Alide2_0398 Alicycliphilus denitrificans K601 NodT family RND efflux system outer membrane lipoprotein YP_004386338.1 413522 R 596154 CDS YP_004386339.1 330823036 10481415 complement(414992..418147) 1 NC_015422.1 KEGG: dia:Dtpsy_0317 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 418147 10481415 Alide2_0399 Alicycliphilus denitrificans K601 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_004386339.1 414992 R 596154 CDS YP_004386340.1 330823037 10481416 complement(418166..419446) 1 NC_015422.1 KEGG: dia:Dtpsy_0318 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 419446 10481416 Alide2_0400 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004386340.1 418166 R 596154 CDS YP_004386341.1 330823038 10481417 419638..420258 1 NC_015422.1 PFAM: Transcription regulator MAATS, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0319 transcriptional regulator, TetR family; TetR family transcriptional regulator 420258 10481417 Alide2_0401 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004386341.1 419638 D 596154 CDS YP_004386342.1 330823039 10481422 420914..422104 1 NC_015422.1 KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, C-terminal; Translation elongation factor EFTu/EF1A, domain 2; translation elongation factor Tu 422104 10481422 Alide2_0402 Alicycliphilus denitrificans K601 translation elongation factor Tu YP_004386342.1 420914 D 596154 CDS YP_004386343.1 330823040 10481424 422281..422664 1 NC_015422.1 KEGG: ajs:Ajs_3903 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein SecE/Sec61-gamma protein; preprotein translocase subunit SecE 422664 10481424 Alide2_0403 Alicycliphilus denitrificans K601 preprotein translocase subunit SecE YP_004386343.1 422281 D 596154 CDS YP_004386344.1 330823041 10481425 422664..423254 1 NC_015422.1 TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: dia:Dtpsy_3251 NusG antitermination factor; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; NusG antitermination factor 423254 10481425 Alide2_0404 Alicycliphilus denitrificans K601 NusG antitermination factor YP_004386344.1 422664 D 596154 CDS YP_004386345.1 330823042 10481426 423385..423816 1 NC_015422.1 TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal domain; Ribosomal protein L11, C-terminal domain; KEGG: aav:Aave_4535 50S ribosomal protein L11; SMART: Ribosomal protein L11; 50S ribosomal protein L11 423816 10481426 Alide2_0405 Alicycliphilus denitrificans K601 50S ribosomal protein L11 YP_004386345.1 423385 D 596154 CDS YP_004386346.1 330823043 10481427 423817..424512 1 NC_015422.1 KEGG: dia:Dtpsy_3249 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1; 50S ribosomal protein L1 424512 10481427 Alide2_0406 Alicycliphilus denitrificans K601 50S ribosomal protein L1 YP_004386346.1 423817 D 596154 CDS YP_004386347.1 330823044 10481428 424745..425251 1 NC_015422.1 KEGG: aav:Aave_4533 50S ribosomal protein L10; HAMAP: Ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; 50S ribosomal protein L10 425251 10481428 Alide2_0407 Alicycliphilus denitrificans K601 50S ribosomal protein L10 YP_004386347.1 424745 D 596154 CDS YP_004386348.1 330823045 10481429 425306..425686 1 NC_015422.1 KEGG: dia:Dtpsy_3247 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; 50S ribosomal protein L7/L12 425686 10481429 Alide2_0408 Alicycliphilus denitrificans K601 50S ribosomal protein L7/L12 YP_004386348.1 425306 D 596154 CDS YP_004386349.1 330823046 10481430 425961..430085 1 NC_015422.1 KEGG: aav:Aave_4531 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 7; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain; DNA-directed RNA polymerase subunit beta 430085 10481430 Alide2_0409 Alicycliphilus denitrificans K601 DNA-directed RNA polymerase subunit beta YP_004386349.1 425961 D 596154 CDS YP_004386350.1 330823047 10481431 430106..434335 1 NC_015422.1 TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 4; KEGG: dia:Dtpsy_3245 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase, N-terminal; DNA-directed RNA polymerase subunit beta' 434335 10481431 Alide2_0410 Alicycliphilus denitrificans K601 DNA-directed RNA polymerase subunit beta' YP_004386350.1 430106 D 596154 CDS YP_004386351.1 330823048 10481432 434455..435021 1 NC_015422.1 PFAM: LemA; KEGG: dia:Dtpsy_3244 hypothetical protein; LemA family protein 435021 10481432 Alide2_0411 Alicycliphilus denitrificans K601 LemA family protein YP_004386351.1 434455 D 596154 CDS YP_004386352.1 330823049 10481433 435018..436385 1 NC_015422.1 KEGG: dia:Dtpsy_3243 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; sun protein 436385 10481433 Alide2_0412 Alicycliphilus denitrificans K601 sun protein YP_004386352.1 435018 D 596154 CDS YP_004386353.1 330823050 10481434 436429..437010 1 NC_015422.1 KEGG: ajs:Ajs_3893 hypothetical protein; hypothetical protein 437010 10481434 Alide2_0413 Alicycliphilus denitrificans K601 hypothetical protein YP_004386353.1 436429 D 596154 CDS YP_004386354.1 330823051 10481435 437007..439295 1 NC_015422.1 KEGG: ajs:Ajs_3892 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; HAMP linker domain; multi-sensor signal transduction histidine kinase 439295 10481435 Alide2_0414 Alicycliphilus denitrificans K601 multi-sensor signal transduction histidine kinase YP_004386354.1 437007 D 596154 CDS YP_004386355.1 330823052 10481436 439335..440030 1 NC_015422.1 KEGG: dia:Dtpsy_3240 two component transcriptional regulator, fis family; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; two component Fis family transcriptional regulator 440030 10481436 Alide2_0415 Alicycliphilus denitrificans K601 two component Fis family transcriptional regulator YP_004386355.1 439335 D 596154 CDS YP_004386356.1 330823053 10481438 complement(440383..440643) 1 NC_015422.1 TIGRFAM: Phage head-tail joining protein; KEGG: aav:Aave_1622 phage head-tail adaptor, putative; phage head-tail adaptor 440643 10481438 Alide2_0416 Alicycliphilus denitrificans K601 phage head-tail adaptor YP_004386356.1 440383 R 596154 CDS YP_004386357.1 330823054 10481439 complement(440683..441516) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region; integrase catalytic subunit 441516 10481439 Alide2_0417 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004386357.1 440683 R 596154 CDS YP_004386358.1 330823055 10481440 complement(441549..441815) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 441815 10481440 Alide2_0418 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004386358.1 441549 R 596154 CDS YP_004386359.1 330823056 10481441 complement(441958..442233) 1 NC_015422.1 TIGRFAM: Bacteriophage HK022, Gp6; KEGG: bcm:Bcenmc03_1290 phage protein DNA packaging protein; phage DNA packaging-like protein 442233 10481441 Alide2_0419 Alicycliphilus denitrificans K601 phage DNA packaging-like protein YP_004386359.1 441958 R 596154 CDS YP_004386360.1 330823057 10481444 complement(444078..444341) 1 NC_015422.1 hypothetical protein 444341 10481444 Alide2_0422 Alicycliphilus denitrificans K601 hypothetical protein YP_004386360.1 444078 R 596154 CDS YP_004386361.1 330823058 10481445 complement(444338..444511) 1 NC_015422.1 hypothetical protein 444511 10481445 Alide2_0423 Alicycliphilus denitrificans K601 hypothetical protein YP_004386361.1 444338 R 596154 CDS YP_004386362.1 330823059 10481446 complement(444508..444693) 1 NC_015422.1 hypothetical protein 444693 10481446 Alide2_0424 Alicycliphilus denitrificans K601 hypothetical protein YP_004386362.1 444508 R 596154 CDS YP_004386363.1 330823060 10481447 complement(444693..445772) 1 NC_015422.1 KEGG: pol:Bpro_0958 putative major phage head protein/prohead proteinase; hypothetical protein 445772 10481447 Alide2_0425 Alicycliphilus denitrificans K601 hypothetical protein YP_004386363.1 444693 R 596154 CDS YP_004386364.1 330823061 10481448 complement(445865..446272) 1 NC_015422.1 hypothetical protein 446272 10481448 Alide2_0426 Alicycliphilus denitrificans K601 hypothetical protein YP_004386364.1 445865 R 596154 CDS YP_004386365.1 330823062 10481449 complement(446259..446603) 1 NC_015422.1 KEGG: pol:Bpro_2970 hypothetical protein; hypothetical protein 446603 10481449 Alide2_0427 Alicycliphilus denitrificans K601 hypothetical protein YP_004386365.1 446259 R 596154 CDS YP_004386366.1 330823063 10481450 complement(446600..447796) 1 NC_015422.1 KEGG: pol:Bpro_2969 hypothetical protein; hypothetical protein 447796 10481450 Alide2_0428 Alicycliphilus denitrificans K601 hypothetical protein YP_004386366.1 446600 R 596154 CDS YP_004386367.1 330823064 10481451 complement(447793..448257) 1 NC_015422.1 KEGG: pol:Bpro_2968 hypothetical protein; hypothetical protein 448257 10481451 Alide2_0429 Alicycliphilus denitrificans K601 hypothetical protein YP_004386367.1 447793 R 596154 CDS YP_004386368.1 330823065 10481452 complement(448268..448468) 1 NC_015422.1 KEGG: drt:Dret_1611 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory; Prophage CP4-57 regulatory protein 448468 10481452 Alide2_0430 Alicycliphilus denitrificans K601 Prophage CP4-57 regulatory protein YP_004386368.1 448268 R 596154 CDS YP_004386369.1 330823066 10481453 complement(448949..449143) 1 NC_015422.1 hypothetical protein 449143 10481453 Alide2_0431 Alicycliphilus denitrificans K601 hypothetical protein YP_004386369.1 448949 R 596154 CDS YP_004386370.1 330823067 10481454 complement(449100..449366) 1 NC_015422.1 hypothetical protein 449366 10481454 Alide2_0432 Alicycliphilus denitrificans K601 hypothetical protein YP_004386370.1 449100 R 596154 CDS YP_004386371.1 330823068 10481455 complement(449467..450690) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: dia:Dtpsy_3164 integrase family protein; integrase family protein 450690 10481455 Alide2_0433 Alicycliphilus denitrificans K601 integrase family protein YP_004386371.1 449467 R 596154 CDS YP_004386372.1 330823069 10481458 452646..453776 1 NC_015422.1 KEGG: pol:Bpro_2745 putative transposase; transposase 453776 10481458 Alide2_0437 Alicycliphilus denitrificans K601 transposase YP_004386372.1 452646 D 596154 CDS YP_004386373.1 330823070 10481459 453742..454035 1 NC_015422.1 KEGG: pol:Bpro_2744 hypothetical protein; hypothetical protein 454035 10481459 Alide2_0438 Alicycliphilus denitrificans K601 hypothetical protein YP_004386373.1 453742 D 596154 CDS YP_004386374.1 330823071 10481460 complement(454753..455763) 1 NC_015422.1 KEGG: dia:Dtpsy_0401 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucuronate 5'-epimerase 455763 10481460 Alide2_0439 Alicycliphilus denitrificans K601 UDP-glucuronate 5'-epimerase YP_004386374.1 454753 R 596154 CDS YP_004386375.1 330823072 10481461 complement(455760..457277) 1 NC_015422.1 KEGG: dia:Dtpsy_0402 glycosyltransferase; glycosyltransferase 457277 10481461 Alide2_0440 Alicycliphilus denitrificans K601 glycosyltransferase YP_004386375.1 455760 R 596154 CDS YP_004386376.1 330823073 10481462 457381..458412 1 NC_015422.1 PFAM: Glycosyl transferase, family 2; KEGG: ajs:Ajs_0411 glycosyl transferase family protein; family 2 glycosyl transferase 458412 10481462 Alide2_0441 Alicycliphilus denitrificans K601 family 2 glycosyl transferase YP_004386376.1 457381 D 596154 CDS YP_004386377.1 330823074 10481463 458409..459332 1 NC_015422.1 KEGG: ajs:Ajs_0412 hypothetical protein; hypothetical protein 459332 10481463 Alide2_0442 Alicycliphilus denitrificans K601 hypothetical protein YP_004386377.1 458409 D 596154 CDS YP_004386378.1 330823075 10481464 complement(459329..460165) 1 NC_015422.1 PFAM: Tetrapyrrole methylase; manually curated; TIGRFAM: Uncharacterised protein family UPF0011; KEGG: dia:Dtpsy_0405 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I; ribosomal RNA small subunit methyltransferase I 460165 10481464 Alide2_0443 Alicycliphilus denitrificans K601 ribosomal RNA small subunit methyltransferase I YP_004386378.1 459329 R 596154 CDS YP_004386379.1 330823076 10481465 460246..460644 1 NC_015422.1 TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: dia:Dtpsy_0406 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; hypothetical protein 460644 10481465 Alide2_0444 Alicycliphilus denitrificans K601 hypothetical protein YP_004386379.1 460246 D 596154 CDS YP_004386380.1 330823077 10481466 460705..461307 1 NC_015422.1 PFAM: Sugar isomerase (SIS); KEGG: dia:Dtpsy_0407 phosphoheptose isomerase; sugar isomerase (SIS) 461307 10481466 Alide2_0445 Alicycliphilus denitrificans K601 sugar isomerase (SIS) YP_004386380.1 460705 D 596154 CDS YP_004386381.1 330823078 10481467 461304..461969 1 NC_015422.1 PFAM: Transport-associated; KEGG: ajs:Ajs_0416 transport-associated; transport-associated protein 461969 10481467 Alide2_0446 Alicycliphilus denitrificans K601 transport-associated protein YP_004386381.1 461304 D 596154 CDS YP_004386382.1 330823079 10481468 complement(461998..462930) 1 NC_015422.1 KEGG: dia:Dtpsy_0409 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 462930 10481468 Alide2_0447 Alicycliphilus denitrificans K601 2-hydroxy-3-oxopropionate reductase YP_004386382.1 461998 R 596154 CDS YP_004386383.1 330823080 10481469 complement(463011..464147) 1 NC_015422.1 KEGG: ajs:Ajs_0418 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; twitching motility protein 464147 10481469 Alide2_0448 Alicycliphilus denitrificans K601 twitching motility protein YP_004386383.1 463011 R 596154 CDS YP_004386384.1 330823081 10481470 complement(464173..464802) 1 NC_015422.1 KEGG: dia:Dtpsy_0411 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator 464802 10481470 Alide2_0449 Alicycliphilus denitrificans K601 Crp/Fnr family transcriptional regulator YP_004386384.1 464173 R 596154 CDS YP_004386385.1 330823082 10481471 complement(464867..465910) 1 NC_015422.1 KEGG: aav:Aave_0637 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; twitching motility protein 465910 10481471 Alide2_0450 Alicycliphilus denitrificans K601 twitching motility protein YP_004386385.1 464867 R 596154 CDS YP_004386386.1 330823083 10481472 465950..466672 1 NC_015422.1 KEGG: dac:Daci_1069 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal; hypothetical protein 466672 10481472 Alide2_0451 Alicycliphilus denitrificans K601 hypothetical protein YP_004386386.1 465950 D 596154 CDS YP_004386387.1 330823084 10481473 466713..467843 1 NC_015422.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: dia:Dtpsy_0414 aminotransferase class V; class V aminotransferase 467843 10481473 Alide2_0452 Alicycliphilus denitrificans K601 class V aminotransferase YP_004386387.1 466713 D 596154 CDS YP_004386388.1 330823085 10481474 complement(467904..468326) 1 NC_015422.1 manually curated; KEGG: aav:Aave_0642 hypothetical protein; hypothetical protein 468326 10481474 Alide2_0453 Alicycliphilus denitrificans K601 hypothetical protein YP_004386388.1 467904 R 596154 CDS YP_004386389.1 330823086 10481475 468511..469812 1 NC_015422.1 PFAM: Protein of unknown function DUF445, transmembrane; KEGG: ajs:Ajs_0423 hypothetical protein; hypothetical protein 469812 10481475 Alide2_0454 Alicycliphilus denitrificans K601 hypothetical protein YP_004386389.1 468511 D 596154 CDS YP_004386390.1 330823087 10481476 complement(469870..471363) 1 NC_015422.1 KEGG: dia:Dtpsy_0417 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; D-lactate dehydrogenase 471363 10481476 Alide2_0455 Alicycliphilus denitrificans K601 D-lactate dehydrogenase YP_004386390.1 469870 R 596154 CDS YP_004386391.1 330823088 10481477 complement(471430..472326) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0418 transcriptional regulator, LysR family; LysR family transcriptional regulator 472326 10481477 Alide2_0456 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386391.1 471430 R 596154 CDS YP_004386392.1 330823089 10481478 complement(472326..473174) 1 NC_015422.1 TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: xtr:100487869 formyltetrahydrofolate deformylase-like; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT; formyltetrahydrofolate deformylase 473174 10481478 Alide2_0457 Alicycliphilus denitrificans K601 formyltetrahydrofolate deformylase YP_004386392.1 472326 R 596154 CDS YP_004386393.1 330823090 10481479 473220..475886 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; PAS fold-3; PAS fold-4; KEGG: ctt:CtCNB1_4372 diguanylate cyclase/phosphodiesterase with; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 475886 10481479 Alide2_0458 Alicycliphilus denitrificans K601 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_004386393.1 473220 D 596154 CDS YP_004386394.1 330823091 10481480 complement(475887..476747) 1 NC_015422.1 PFAM: Domain of unknown function DUF399; KEGG: dia:Dtpsy_0421 protein of unknown function DUF399; hypothetical protein 476747 10481480 Alide2_0459 Alicycliphilus denitrificans K601 hypothetical protein YP_004386394.1 475887 R 596154 CDS YP_004386395.1 330823092 10481481 477014..479449 1 NC_015422.1 TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: ajs:Ajs_0431 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ribonucleoside-diphosphate reductase 479449 10481481 Alide2_0460 Alicycliphilus denitrificans K601 ribonucleoside-diphosphate reductase YP_004386395.1 477014 D 596154 CDS YP_004386396.1 330823093 10481482 479628..481544 1 NC_015422.1 KEGG: dia:Dtpsy_0423 GAF sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; HAMP linker domain; GAF; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; multi-sensor signal transduction histidine kinase 481544 10481482 Alide2_0461 Alicycliphilus denitrificans K601 multi-sensor signal transduction histidine kinase YP_004386396.1 479628 D 596154 CDS YP_004386397.1 330823094 10481483 481541..482215 1 NC_015422.1 KEGG: dia:Dtpsy_0424 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; two component LuxR family transcriptional regulator 482215 10481483 Alide2_0462 Alicycliphilus denitrificans K601 two component LuxR family transcriptional regulator YP_004386397.1 481541 D 596154 CDS YP_004386398.1 330823095 10481484 482444..483739 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_0434 major facilitator superfamily transporter; major facilitator superfamily protein 483739 10481484 Alide2_0463 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004386398.1 482444 D 596154 CDS YP_004386399.1 330823096 10481485 483758..485203 1 NC_015422.1 KEGG: xtr:100497879 nitrite extrusion protein 1-like; TIGRFAM: Nitrate transporter; PFAM: Major facilitator superfamily MFS-1; nitrite transporter 485203 10481485 Alide2_0464 Alicycliphilus denitrificans K601 nitrite transporter YP_004386399.1 483758 D 596154 CDS YP_004386400.1 330823097 10481486 485240..489034 1 NC_015422.1 SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Nitrate reductase, alpha subunit; KEGG: ajs:Ajs_0436 respiratory nitrate reductase alpha subunit apoprotein; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; nitrate reductase subunit alpha 489034 10481486 Alide2_0465 Alicycliphilus denitrificans K601 nitrate reductase subunit alpha YP_004386400.1 485240 D 596154 CDS YP_004386401.1 330823098 10481487 489053..490576 1 NC_015422.1 KEGG: dia:Dtpsy_0428 nitrate reductase, beta subunit; TIGRFAM: Nitrate reductase, beta subunit; nitrate reductase subunit beta 490576 10481487 Alide2_0466 Alicycliphilus denitrificans K601 nitrate reductase subunit beta YP_004386401.1 489053 D 596154 CDS YP_004386402.1 330823099 10481488 490588..491289 1 NC_015422.1 TIGRFAM: Nitrate reductase chaperone, NarJ; KEGG: dia:Dtpsy_0429 nitrate reductase molybdenum cofactor assembly chaperone; PFAM: DMSO/Nitrate reductase chaperone; nitrate reductase molybdenum cofactor assembly chaperone 491289 10481488 Alide2_0467 Alicycliphilus denitrificans K601 nitrate reductase molybdenum cofactor assembly chaperone YP_004386402.1 490588 D 596154 CDS YP_004386403.1 330823100 10481489 491286..492014 1 NC_015422.1 TIGRFAM: Nitrate reductase, gamma subunit; KEGG: dia:Dtpsy_0430 respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma 492014 10481489 Alide2_0468 Alicycliphilus denitrificans K601 respiratory nitrate reductase subunit gamma YP_004386403.1 491286 D 596154 CDS YP_004386404.1 330823101 10481490 492142..492969 1 NC_015422.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_0431 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 492969 10481490 Alide2_0469 Alicycliphilus denitrificans K601 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004386404.1 492142 D 596154 CDS YP_004386405.1 330823102 10481491 493004..493681 1 NC_015422.1 PFAM: Carbonic anhydrase; KEGG: dia:Dtpsy_0432 carbonate dehydratase; SMART: Carbonic anhydrase; carbonate dehydratase 493681 10481491 Alide2_0470 Alicycliphilus denitrificans K601 carbonate dehydratase YP_004386405.1 493004 D 596154 CDS YP_004386406.1 330823103 10481492 493681..494331 1 NC_015422.1 PFAM: Nitroreductase-like; KEGG: dia:Dtpsy_0434 nitroreductase; nitroreductase 494331 10481492 Alide2_0471 Alicycliphilus denitrificans K601 nitroreductase YP_004386406.1 493681 D 596154 CDS YP_004386407.1 330823104 10481493 494328..494747 1 NC_015422.1 KEGG: dia:Dtpsy_0435 hypothetical protein; hypothetical protein 494747 10481493 Alide2_0472 Alicycliphilus denitrificans K601 hypothetical protein YP_004386407.1 494328 D 596154 CDS YP_004386408.1 330823105 10481494 494801..495349 1 NC_015422.1 KEGG: dia:Dtpsy_0436 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 495349 10481494 Alide2_0473 Alicycliphilus denitrificans K601 hemerythrin HHE cation binding domain-containing protein YP_004386408.1 494801 D 596154 CDS YP_004386409.1 330823106 10481495 complement(495539..495826) 1 NC_015422.1 PFAM: Protein of unknown function DUF3567; KEGG: ajs:Ajs_0446 hypothetical protein; hypothetical protein 495826 10481495 Alide2_0474 Alicycliphilus denitrificans K601 hypothetical protein YP_004386409.1 495539 R 596154 CDS YP_004386410.1 330823107 10481496 complement(495960..497111) 1 NC_015422.1 KEGG: ajs:Ajs_0447 hypothetical protein; hypothetical protein 497111 10481496 Alide2_0475 Alicycliphilus denitrificans K601 hypothetical protein YP_004386410.1 495960 R 596154 CDS YP_004386411.1 330823108 10481497 497293..498282 1 NC_015422.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: ajs:Ajs_0449 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 498282 10481497 Alide2_0476 Alicycliphilus denitrificans K601 fumarylacetoacetate (FAA) hydrolase YP_004386411.1 497293 D 596154 CDS YP_004386412.1 330823109 10481498 498439..500643 1 NC_015422.1 KEGG: cph:Cpha266_1840 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; hypothetical protein 500643 10481498 Alide2_0477 Alicycliphilus denitrificans K601 hypothetical protein YP_004386412.1 498439 D 596154 CDS YP_004386413.1 330823110 10481499 complement(500704..502779) 1 NC_015422.1 PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: ajs:Ajs_0451 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; trimethylamine-N-oxide reductase (cytochrome c) 502779 10481499 Alide2_0478 Alicycliphilus denitrificans K601 trimethylamine-N-oxide reductase (cytochrome c) YP_004386413.1 500704 R 596154 CDS YP_004386414.1 330823111 10481500 complement(502897..503928) 1 NC_015422.1 KEGG: vei:Veis_1579 hypothetical protein; hypothetical protein 503928 10481500 Alide2_0479 Alicycliphilus denitrificans K601 hypothetical protein YP_004386414.1 502897 R 596154 CDS YP_004386415.1 330823112 10481501 complement(503969..504877) 1 NC_015422.1 KEGG: vei:Veis_1580 citryl-CoA lyase; PFAM: Aldehyde-lyase domain; citryl-CoA lyase 504877 10481501 Alide2_0480 Alicycliphilus denitrificans K601 citryl-CoA lyase YP_004386415.1 503969 R 596154 CDS YP_004386416.1 330823113 10481502 complement(504893..506125) 1 NC_015422.1 KEGG: vei:Veis_1581 formyl-CoA transferase; PFAM: CoA-transferase family III; formyl-CoA transferase 506125 10481502 Alide2_0481 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004386416.1 504893 R 596154 CDS YP_004386417.1 330823114 10481503 complement(506122..506625) 1 NC_015422.1 KEGG: cti:RALTA_B1741 hypothetical protein; hypothetical protein 506625 10481503 Alide2_0482 Alicycliphilus denitrificans K601 hypothetical protein YP_004386417.1 506122 R 596154 CDS YP_004386418.1 330823115 10481504 complement(506622..507872) 1 NC_015422.1 KEGG: cti:RALTA_B1742 putative acyl CoA dehydrogenase oxidoreductase protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase 507872 10481504 Alide2_0483 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004386418.1 506622 R 596154 CDS YP_004386419.1 330823116 10481505 complement(507877..508380) 1 NC_015422.1 PFAM: MaoC-like dehydratase; KEGG: cti:RALTA_B1743 hypothetical protein; MaoC domain-containing protein dehydratase 508380 10481505 Alide2_0484 Alicycliphilus denitrificans K601 MaoC domain-containing protein dehydratase YP_004386419.1 507877 R 596154 CDS YP_004386420.1 330823117 10481506 complement(508377..509756) 1 NC_015422.1 PFAM: MmgE/PrpD; KEGG: vei:Veis_1585 MmgE/PrpD family protein; MmgE/PrpD family protein 509756 10481506 Alide2_0485 Alicycliphilus denitrificans K601 MmgE/PrpD family protein YP_004386420.1 508377 R 596154 CDS YP_004386421.1 330823118 10481507 509962..510837 1 NC_015422.1 KEGG: xau:Xaut_1974 citryl-CoA lyase; PFAM: Aldehyde-lyase domain; citryl-CoA lyase 510837 10481507 Alide2_0486 Alicycliphilus denitrificans K601 citryl-CoA lyase YP_004386421.1 509962 D 596154 CDS YP_004386422.1 330823119 10481508 510844..511602 1 NC_015422.1 PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; KEGG: rcu:RCOM_0002820 Transcriptional regulator kdgR, putative; IclR family transcriptional regulator 511602 10481508 Alide2_0487 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004386422.1 510844 D 596154 CDS YP_004386423.1 330823120 10481509 511704..512909 1 NC_015422.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: dia:Dtpsy_0444 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; amidohydrolase 512909 10481509 Alide2_0488 Alicycliphilus denitrificans K601 amidohydrolase YP_004386423.1 511704 D 596154 CDS YP_004386424.1 330823121 10481510 512978..513235 1 NC_015422.1 PFAM: Acyl-CoA-binding protein, ACBP; KEGG: dia:Dtpsy_0446 acyl-coA-binding protein ACBP; acyl-coA-binding protein ACBP 513235 10481510 Alide2_0489 Alicycliphilus denitrificans K601 acyl-coA-binding protein ACBP YP_004386424.1 512978 D 596154 CDS YP_004386425.1 330823122 10481511 complement(513238..514341) 1 NC_015422.1 PFAM: aminopeptidase; KEGG: dia:Dtpsy_0447 putative zinc protease protein; aminopeptidase 514341 10481511 Alide2_0490 Alicycliphilus denitrificans K601 aminopeptidase YP_004386425.1 513238 R 596154 CDS YP_004386426.1 330823123 10481512 514348..515007 1 NC_015422.1 KEGG: ajs:Ajs_0457 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase; DNA-3-methyladenine glycosylase I 515007 10481512 Alide2_0491 Alicycliphilus denitrificans K601 DNA-3-methyladenine glycosylase I YP_004386426.1 514348 D 596154 CDS YP_004386427.1 330823124 10481513 complement(515058..515219) 1 NC_015422.1 KEGG: dia:Dtpsy_0450 hypothetical protein; hypothetical protein 515219 10481513 Alide2_0492 Alicycliphilus denitrificans K601 hypothetical protein YP_004386427.1 515058 R 596154 CDS YP_004386428.1 330823125 10481514 515500..516798 1 NC_015422.1 KEGG: ajs:Ajs_0460 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase; cyclopropane-fatty-acyl-phospholipid synthase 516798 10481514 Alide2_0493 Alicycliphilus denitrificans K601 cyclopropane-fatty-acyl-phospholipid synthase YP_004386428.1 515500 D 596154 CDS YP_004386429.1 330823126 10481515 516820..517140 1 NC_015422.1 PFAM: Protein of unknown function DUF1840; KEGG: dia:Dtpsy_0452 hypothetical protein; hypothetical protein 517140 10481515 Alide2_0494 Alicycliphilus denitrificans K601 hypothetical protein YP_004386429.1 516820 D 596154 CDS YP_004386430.1 330823127 10481516 complement(517163..518179) 1 NC_015422.1 KEGG: ajs:Ajs_0462 hypothetical protein; hypothetical protein 518179 10481516 Alide2_0495 Alicycliphilus denitrificans K601 hypothetical protein YP_004386430.1 517163 R 596154 CDS YP_004386431.1 330823128 10481517 complement(518322..519311) 1 NC_015422.1 KEGG: vap:Vapar_5015 hypothetical protein; hypothetical protein 519311 10481517 Alide2_0496 Alicycliphilus denitrificans K601 hypothetical protein YP_004386431.1 518322 R 596154 CDS YP_004386432.1 330823129 10481518 complement(519438..520685) 1 NC_015422.1 PFAM: AMP-dependent synthetase/ligase; KEGG: dia:Dtpsy_0455 putative phenylacetate-CoA ligase; AMP-dependent synthetase and ligase 520685 10481518 Alide2_0497 Alicycliphilus denitrificans K601 AMP-dependent synthetase and ligase YP_004386432.1 519438 R 596154 CDS YP_004386433.1 330823130 10481519 complement(520776..521618) 1 NC_015422.1 KEGG: ctt:CtCNB1_4329 high-affinity branched-chain amino acid transport ATP-binding protein LivF; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 521618 10481519 Alide2_0498 Alicycliphilus denitrificans K601 ABC transporter YP_004386433.1 520776 R 596154 CDS YP_004386434.1 330823131 10481520 complement(521758..523071) 1 NC_015422.1 KEGG: dac:Daci_1155 hypothetical protein; hypothetical protein 523071 10481520 Alide2_0499 Alicycliphilus denitrificans K601 hypothetical protein YP_004386434.1 521758 R 596154 CDS YP_004386435.1 330823132 10481521 complement(523130..524194) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: ctt:CtCNB1_4327 membrane protein; ABC transporter permease 524194 10481521 Alide2_0500 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386435.1 523130 R 596154 CDS YP_004386436.1 330823133 10481522 complement(524216..525145) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: ctt:CtCNB1_4326 high-affinity branched-chain amino acidtransport system permease protein LivH; ABC transporter permease 525145 10481522 Alide2_0501 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386436.1 524216 R 596154 CDS YP_004386437.1 330823134 10481523 complement(525166..525951) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dac:Daci_1158 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase 525951 10481523 Alide2_0502 Alicycliphilus denitrificans K601 sulfate-transporting ATPase YP_004386437.1 525166 R 596154 CDS YP_004386438.1 330823135 10481524 complement(525969..527900) 1 NC_015422.1 KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 527900 10481524 Alide2_0503 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004386438.1 525969 R 596154 CDS YP_004386439.1 330823136 10481525 528121..529812 1 NC_015422.1 KEGG: dia:Dtpsy_0462 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan binding-like; SMART: ATPase, AAA+ type, core; peptidoglycan-binding domain-containing protein 529812 10481525 Alide2_0504 Alicycliphilus denitrificans K601 peptidoglycan-binding domain-containing protein YP_004386439.1 528121 D 596154 CDS YP_004386440.1 330823137 10481526 529817..530521 1 NC_015422.1 KEGG: ajs:Ajs_0472 hypothetical protein; hypothetical protein 530521 10481526 Alide2_0505 Alicycliphilus denitrificans K601 hypothetical protein YP_004386440.1 529817 D 596154 CDS YP_004386441.1 330823138 10481527 530651..531442 1 NC_015422.1 KEGG: ajs:Ajs_0473 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator 531442 10481527 Alide2_0506 Alicycliphilus denitrificans K601 Crp/Fnr family transcriptional regulator YP_004386441.1 530651 D 596154 CDS YP_004386442.1 330823139 10481528 531481..532401 1 NC_015422.1 TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: ajs:Ajs_0474 RNA-binding S4 domain-containing protein; SMART: RNA-binding S4; pseudouridine synthase Rsu 532401 10481528 Alide2_0507 Alicycliphilus denitrificans K601 pseudouridine synthase Rsu YP_004386442.1 531481 D 596154 CDS YP_004386443.1 330823140 10481529 532499..534460 1 NC_015422.1 KEGG: dia:Dtpsy_0466 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Heat shock protein Hsp90 534460 10481529 Alide2_0508 Alicycliphilus denitrificans K601 Heat shock protein Hsp90 YP_004386443.1 532499 D 596154 CDS YP_004386444.1 330823141 10481530 534493..534978 1 NC_015422.1 KEGG: dac:Daci_1191 hypothetical protein; hypothetical protein 534978 10481530 Alide2_0509 Alicycliphilus denitrificans K601 hypothetical protein YP_004386444.1 534493 D 596154 CDS YP_004386445.1 330823142 10481531 535072..536052 1 NC_015422.1 KEGG: dia:Dtpsy_0467 hypothetical protein; hypothetical protein 536052 10481531 Alide2_0510 Alicycliphilus denitrificans K601 hypothetical protein YP_004386445.1 535072 D 596154 CDS YP_004386446.1 330823143 10481532 complement(536053..537096) 1 NC_015422.1 PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0479 serine/threonine protein kinase; aminoglycoside phosphotransferase 537096 10481532 Alide2_0511 Alicycliphilus denitrificans K601 aminoglycoside phosphotransferase YP_004386446.1 536053 R 596154 CDS YP_004386447.1 330823144 10481533 complement(537119..538567) 1 NC_015422.1 PFAM: Serine/threonine-protein kinase-like domain; UspA; KEGG: dia:Dtpsy_0471 serine/threonine protein kinase; serine/threonine protein kinase 538567 10481533 Alide2_0512 Alicycliphilus denitrificans K601 serine/threonine protein kinase YP_004386447.1 537119 R 596154 CDS YP_004386448.1 330823145 10481534 complement(538571..539329) 1 NC_015422.1 PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_0472 metallophosphoesterase; metallophosphoesterase 539329 10481534 Alide2_0513 Alicycliphilus denitrificans K601 metallophosphoesterase YP_004386448.1 538571 R 596154 CDS YP_004386449.1 330823146 10481535 539559..540755 1 NC_015422.1 KEGG: ajs:Ajs_0058 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 540755 10481535 Alide2_0514 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004386449.1 539559 D 596154 CDS YP_004386450.1 330823147 10481536 540790..541251 1 NC_015422.1 KEGG: ctt:CtCNB1_2196 hypothetical protein; hypothetical protein 541251 10481536 Alide2_0515 Alicycliphilus denitrificans K601 hypothetical protein YP_004386450.1 540790 D 596154 CDS YP_004386451.1 330823148 10481538 complement(541514..542314) 1 NC_015422.1 TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: dia:Dtpsy_0475 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 542314 10481538 Alide2_0517 Alicycliphilus denitrificans K601 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_004386451.1 541514 R 596154 CDS YP_004386452.1 330823149 10481539 complement(542317..543144) 1 NC_015422.1 TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; KEGG: aav:Aave_4269 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetase, C-terminal-like; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 543144 10481539 Alide2_0518 Alicycliphilus denitrificans K601 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_004386452.1 542317 R 596154 CDS YP_004386453.1 330823150 10481540 complement(543141..544010) 1 NC_015422.1 KEGG: aav:Aave_4268 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 544010 10481540 Alide2_0519 Alicycliphilus denitrificans K601 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_004386453.1 543141 R 596154 CDS YP_004386454.1 330823151 10481541 complement(544007..544900) 1 NC_015422.1 PFAM: Amidohydrolase 2; KEGG: aav:Aave_4267 amidohydrolase 2; amidohydrolase 2 544900 10481541 Alide2_0520 Alicycliphilus denitrificans K601 amidohydrolase 2 YP_004386454.1 544007 R 596154 CDS YP_004386455.1 330823152 10481542 complement(544921..545373) 1 NC_015422.1 PFAM: Endoribonuclease L-PSP; KEGG: aav:Aave_4266 endoribonuclease L-PSP; endoribonuclease L-PSP 545373 10481542 Alide2_0521 Alicycliphilus denitrificans K601 endoribonuclease L-PSP YP_004386455.1 544921 R 596154 CDS YP_004386456.1 330823153 10481543 complement(545331..546311) 1 NC_015422.1 KEGG: aav:Aave_4265 hypothetical protein; hypothetical protein 546311 10481543 Alide2_0522 Alicycliphilus denitrificans K601 hypothetical protein YP_004386456.1 545331 R 596154 CDS YP_004386457.1 330823154 10481544 546516..547154 1 NC_015422.1 KEGG: aav:Aave_4263 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding; flavin reductase domain-containing proten 547154 10481544 Alide2_0523 Alicycliphilus denitrificans K601 flavin reductase domain-containing proten YP_004386457.1 546516 D 596154 CDS YP_004386458.1 330823155 10481545 547151..547939 1 NC_015422.1 KEGG: aav:Aave_4262 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 547939 10481545 Alide2_0524 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004386458.1 547151 D 596154 CDS YP_004386459.1 330823156 10481546 complement(547947..548795) 1 NC_015422.1 KEGG: ajs:Ajs_3718 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; 3-hydroxybutyryl-CoA dehydrogenase 548795 10481546 Alide2_0525 Alicycliphilus denitrificans K601 3-hydroxybutyryl-CoA dehydrogenase YP_004386459.1 547947 R 596154 CDS YP_004386460.1 330823157 10481547 548895..550487 1 NC_015422.1 KEGG: dia:Dtpsy_0477 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; choline dehydrogenase 550487 10481547 Alide2_0526 Alicycliphilus denitrificans K601 choline dehydrogenase YP_004386460.1 548895 D 596154 CDS YP_004386461.1 330823158 10481550 complement(551199..552017) 1 NC_015422.1 KEGG: ajs:Ajs_3712 ABC transporter; TIGRFAM: ABC-2 type transporter, NodJ; PFAM: ABC-2 type transporter; ABC transporter 552017 10481550 Alide2_0529 Alicycliphilus denitrificans K601 ABC transporter YP_004386461.1 551199 R 596154 CDS YP_004386462.1 330823159 10481551 complement(552019..552960) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_3711 ABC transporter related; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase 552960 10481551 Alide2_0530 Alicycliphilus denitrificans K601 Fe(3+)-transporting ATPase YP_004386462.1 552019 R 596154 CDS YP_004386463.1 330823160 10481552 complement(553065..554777) 1 NC_015422.1 PFAM: Tannase/feruloyl esterase; KEGG: reu:Reut_A1509 tannase and feruloyl esterase; tannase and feruloyl esterase 554777 10481552 Alide2_0531 Alicycliphilus denitrificans K601 tannase and feruloyl esterase YP_004386463.1 553065 R 596154 CDS YP_004386464.1 330823161 10481553 complement(554919..556403) 1 NC_015422.1 TIGRFAM: AMP nucleosidase; KEGG: aav:Aave_4246 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase, N-terminal; Nucleoside phosphorylase domain; AMP nucleosidase 556403 10481553 Alide2_0532 Alicycliphilus denitrificans K601 AMP nucleosidase YP_004386464.1 554919 R 596154 CDS YP_004386465.1 330823162 10481554 complement(556439..558535) 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; PAS fold-3; KEGG: dia:Dtpsy_0486 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 558535 10481554 Alide2_0533 Alicycliphilus denitrificans K601 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_004386465.1 556439 R 596154 CDS YP_004386466.1 330823163 10481555 558599..559591 1 NC_015422.1 KEGG: ajs:Ajs_3707 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein; cation diffusion facilitator family transporter 559591 10481555 Alide2_0534 Alicycliphilus denitrificans K601 cation diffusion facilitator family transporter YP_004386466.1 558599 D 596154 CDS YP_004386467.1 330823164 10481556 559588..560031 1 NC_015422.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dia:Dtpsy_0488 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 560031 10481556 Alide2_0535 Alicycliphilus denitrificans K601 D-tyrosyl-tRNA(Tyr) deacylase YP_004386467.1 559588 D 596154 CDS YP_004386468.1 330823165 10481557 complement(560097..560843) 1 NC_015422.1 PFAM: Protein of unknown function DUF81; KEGG: dia:Dtpsy_0490 protein of unknown function DUF81; hypothetical protein 560843 10481557 Alide2_0536 Alicycliphilus denitrificans K601 hypothetical protein YP_004386468.1 560097 R 596154 CDS YP_004386469.1 330823166 10481558 complement(561009..561956) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_1220 LysR family transcriptional regulator; LysR family transcriptional regulator 561956 10481558 Alide2_0537 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386469.1 561009 R 596154 CDS YP_004386470.1 330823167 10481559 562061..563032 1 NC_015422.1 KEGG: dac:Daci_1221 hypothetical protein; hypothetical protein 563032 10481559 Alide2_0538 Alicycliphilus denitrificans K601 hypothetical protein YP_004386470.1 562061 D 596154 CDS YP_004386471.1 330823168 10481560 563052..564302 1 NC_015422.1 KEGG: dac:Daci_1222 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 564302 10481560 Alide2_0539 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004386471.1 563052 D 596154 CDS YP_004386472.1 330823169 10481561 564335..565321 1 NC_015422.1 KEGG: dac:Daci_1223 quinone oxidoreductase; TIGRFAM: Quinone oxidoreductase putative, YhdH/YhfP; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; YhdH/YhfP family quinone oxidoreductase 565321 10481561 Alide2_0540 Alicycliphilus denitrificans K601 YhdH/YhfP family quinone oxidoreductase YP_004386472.1 564335 D 596154 CDS YP_004386473.1 330823170 10481562 565377..566936 1 NC_015422.1 KEGG: reh:H16_B1709 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 566936 10481562 Alide2_0541 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004386473.1 565377 D 596154 CDS YP_004386474.1 330823171 10481563 complement(566953..567405) 1 NC_015422.1 TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: ajs:Ajs_3702 hypothetical protein; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; metalloprotease ybeY 567405 10481563 Alide2_0542 Alicycliphilus denitrificans K601 metalloprotease ybeY YP_004386474.1 566953 R 596154 CDS YP_004386475.1 330823172 10481564 complement(567457..568407) 1 NC_015422.1 PFAM: PhoH-like protein; KEGG: dia:Dtpsy_0492 PhoH family protein; PhoH family protein 568407 10481564 Alide2_0543 Alicycliphilus denitrificans K601 PhoH family protein YP_004386475.1 567457 R 596154 CDS YP_004386476.1 330823173 10481565 568455..569027 1 NC_015422.1 TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; KEGG: dia:Dtpsy_0493 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding motif, class 1; Holliday junction DNA helicase RuvA 569027 10481565 Alide2_0544 Alicycliphilus denitrificans K601 Holliday junction DNA helicase RuvA YP_004386476.1 568455 D 596154 CDS YP_004386477.1 330823174 10481566 569065..570546 1 NC_015422.1 KEGG: dia:Dtpsy_0494 endoproteinase Arg-C; endoproteinase ArgC 570546 10481566 Alide2_0545 Alicycliphilus denitrificans K601 endoproteinase ArgC YP_004386477.1 569065 D 596154 CDS YP_004386478.1 330823175 10481567 complement(570560..573364) 1 NC_015422.1 KEGG: ajs:Ajs_3698 DnaK-related protein; DnaK-like protein 573364 10481567 Alide2_0546 Alicycliphilus denitrificans K601 DnaK-like protein YP_004386478.1 570560 R 596154 CDS YP_004386479.1 330823176 10481568 complement(573361..575253) 1 NC_015422.1 KEGG: dac:Daci_5720 putative heat-shock chaperone protein; heat-shock chaperone protein 575253 10481568 Alide2_0547 Alicycliphilus denitrificans K601 heat-shock chaperone protein YP_004386479.1 573361 R 596154 CDS YP_004386480.1 330823177 10481569 complement(575250..575855) 1 NC_015422.1 KEGG: dac:Daci_5721 hypothetical protein; hypothetical protein 575855 10481569 Alide2_0548 Alicycliphilus denitrificans K601 hypothetical protein YP_004386480.1 575250 R 596154 CDS YP_004386481.1 330823178 10481570 575913..577040 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: dia:Dtpsy_0499 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; Holliday junction DNA helicase subunit RuvB 577040 10481570 Alide2_0549 Alicycliphilus denitrificans K601 Holliday junction DNA helicase subunit RuvB YP_004386481.1 575913 D 596154 CDS YP_004386482.1 330823179 10481571 complement(577050..577772) 1 NC_015422.1 PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter; MgtC/SapB transporter 577772 10481571 Alide2_0550 Alicycliphilus denitrificans K601 MgtC/SapB transporter YP_004386482.1 577050 R 596154 CDS YP_004386483.1 330823180 10481572 complement(577828..578178) 1 NC_015422.1 hypothetical protein 578178 10481572 Alide2_0551 Alicycliphilus denitrificans K601 hypothetical protein YP_004386483.1 577828 R 596154 CDS YP_004386484.1 330823181 10481573 complement(578286..578480) 1 NC_015422.1 KEGG: ctt:CtCNB1_4283 hypothetical protein; hypothetical protein 578480 10481573 Alide2_0552 Alicycliphilus denitrificans K601 hypothetical protein YP_004386484.1 578286 R 596154 CDS YP_004386485.1 330823182 10481574 complement(578824..579987) 1 NC_015422.1 PFAM: Alanine racemase, N-terminal; KEGG: dia:Dtpsy_0501 alanine racemase domain protein; alanine racemase domain-containing protein 579987 10481574 Alide2_0553 Alicycliphilus denitrificans K601 alanine racemase domain-containing protein YP_004386485.1 578824 R 596154 CDS YP_004386486.1 330823183 10481575 complement(579971..580618) 1 NC_015422.1 KEGG: dia:Dtpsy_0502 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase 580618 10481575 Alide2_0554 Alicycliphilus denitrificans K601 phosphoglycerate mutase YP_004386486.1 579971 R 596154 CDS YP_004386487.1 330823184 10481576 complement(580626..581240) 1 NC_015422.1 KEGG: dia:Dtpsy_0504 hypothetical protein; hypothetical protein 581240 10481576 Alide2_0555 Alicycliphilus denitrificans K601 hypothetical protein YP_004386487.1 580626 R 596154 CDS YP_004386488.1 330823185 10481577 complement(581414..582346) 1 NC_015422.1 KEGG: dia:Dtpsy_0505 PP-loop domain protein; HAMAP: 2-thiocytidine tRNA biosynthesis protein, TtcA; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; tRNA 2-thiocytidine biosynthesis protein TtcA 582346 10481577 Alide2_0556 Alicycliphilus denitrificans K601 tRNA 2-thiocytidine biosynthesis protein TtcA YP_004386488.1 581414 R 596154 CDS YP_004386489.1 330823186 10481578 complement(582351..582743) 1 NC_015422.1 TIGRFAM: Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; KEGG: dia:Dtpsy_0506 dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase; dihydroneopterin aldolase 582743 10481578 Alide2_0557 Alicycliphilus denitrificans K601 dihydroneopterin aldolase YP_004386489.1 582351 R 596154 CDS YP_004386490.1 330823187 10481579 complement(582748..583161) 1 NC_015422.1 KEGG: dia:Dtpsy_0507 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase; dihydroneopterin aldolase 583161 10481579 Alide2_0558 Alicycliphilus denitrificans K601 dihydroneopterin aldolase YP_004386490.1 582748 R 596154 CDS YP_004386491.1 330823188 10481580 complement(583158..583964) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bge:BC1002_2951 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 583964 10481580 Alide2_0559 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004386491.1 583158 R 596154 CDS YP_004386492.1 330823189 10481581 584103..585188 1 NC_015422.1 PFAM: Protein of unknown function DUF185; KEGG: dia:Dtpsy_0510 protein of unknown function DUF185; hypothetical protein 585188 10481581 Alide2_0560 Alicycliphilus denitrificans K601 hypothetical protein YP_004386492.1 584103 D 596154 CDS YP_004386493.1 330823190 10481582 585215..585619 1 NC_015422.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4030 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 585619 10481582 Alide2_0561 Alicycliphilus denitrificans K601 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004386493.1 585215 D 596154 CDS YP_004386494.1 330823191 10481583 585623..585817 1 NC_015422.1 KEGG: dia:Dtpsy_0515 hypothetical protein; hypothetical protein 585817 10481583 Alide2_0562 Alicycliphilus denitrificans K601 hypothetical protein YP_004386494.1 585623 D 596154 CDS YP_004386495.1 330823192 10481584 585960..586919 1 NC_015422.1 PFAM: ROK; KEGG: ajs:Ajs_0500 glucokinase; ROK family protein 586919 10481584 Alide2_0563 Alicycliphilus denitrificans K601 ROK family protein YP_004386495.1 585960 D 596154 CDS YP_004386496.1 330823193 10481585 complement(586880..588271) 1 NC_015422.1 KEGG: ajs:Ajs_0501 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: Glycosyl transferase, family 20; alpha,alpha-trehalose-phosphate synthase 588271 10481585 Alide2_0564 Alicycliphilus denitrificans K601 alpha,alpha-trehalose-phosphate synthase YP_004386496.1 586880 R 596154 CDS YP_004386497.1 330823194 10481586 complement(588268..590070) 1 NC_015422.1 PFAM: Glycoside hydrolase 15-related; KEGG: ajs:Ajs_0502 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 590070 10481586 Alide2_0565 Alicycliphilus denitrificans K601 glycoside hydrolase 15-like protein YP_004386497.1 588268 R 596154 CDS YP_004386498.1 330823195 10481587 complement(590076..590831) 1 NC_015422.1 KEGG: dia:Dtpsy_0519 trehalose-phosphatase; TIGRFAM: Trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Trehalose-phosphatase; trehalose-phosphatase 590831 10481587 Alide2_0566 Alicycliphilus denitrificans K601 trehalose-phosphatase YP_004386498.1 590076 R 596154 CDS YP_004386499.1 330823196 10481588 590974..591420 1 NC_015422.1 TIGRFAM: Thioredoxin; Zinc finger/thioredoxin putative; KEGG: dia:Dtpsy_0520 thioredoxin; PFAM: Thioredoxin domain; thioredoxin 591420 10481588 Alide2_0567 Alicycliphilus denitrificans K601 thioredoxin YP_004386499.1 590974 D 596154 CDS YP_004386500.1 330823197 10481589 complement(591409..592656) 1 NC_015422.1 HAMAP: tRNA nucleotidyltransferase, proteobacteria; KEGG: dia:Dtpsy_0521 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 592656 10481589 Alide2_0568 Alicycliphilus denitrificans K601 polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_004386500.1 591409 R 596154 CDS YP_004386501.1 330823198 10481590 592723..593706 1 NC_015422.1 KEGG: axy:AXYL_01756 acetoacetate metabolism regulatory protein AtoC; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma-54 specific transcriptional regulator 593706 10481590 Alide2_0569 Alicycliphilus denitrificans K601 Fis family sigma-54 specific transcriptional regulator YP_004386501.1 592723 D 596154 CDS YP_004386502.1 330823199 10481591 593891..595252 1 NC_015422.1 KEGG: vei:Veis_3993 hypothetical protein; hypothetical protein 595252 10481591 Alide2_0570 Alicycliphilus denitrificans K601 hypothetical protein YP_004386502.1 593891 D 596154 CDS YP_004386503.1 330823200 10481592 595267..595587 1 NC_015422.1 KEGG: axy:AXYL_01758 hypothetical protein; hypothetical protein 595587 10481592 Alide2_0571 Alicycliphilus denitrificans K601 hypothetical protein YP_004386503.1 595267 D 596154 CDS YP_004386504.1 330823201 10481593 595625..596596 1 NC_015422.1 KEGG: vei:Veis_3991 hypothetical protein; hypothetical protein 596596 10481593 Alide2_0572 Alicycliphilus denitrificans K601 hypothetical protein YP_004386504.1 595625 D 596154 CDS YP_004386505.1 330823202 10481594 complement(596598..597368) 1 NC_015422.1 PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_0522 metallophosphoesterase; metallophosphoesterase 597368 10481594 Alide2_0573 Alicycliphilus denitrificans K601 metallophosphoesterase YP_004386505.1 596598 R 596154 CDS YP_004386506.1 330823203 10481595 complement(597387..598073) 1 NC_015422.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: ajs:Ajs_0507 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein 598073 10481595 Alide2_0574 Alicycliphilus denitrificans K601 glutathione S-transferase domain-containing protein YP_004386506.1 597387 R 596154 CDS YP_004386507.1 330823204 10481596 complement(598162..598734) 1 NC_015422.1 KEGG: dia:Dtpsy_0524 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 598734 10481596 Alide2_0575 Alicycliphilus denitrificans K601 5-formyltetrahydrofolate cyclo-ligase YP_004386507.1 598162 R 596154 CDS YP_004386508.1 330823205 10481597 598749..600731 1 NC_015422.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: dia:Dtpsy_0525 lytic transglycosylase catalytic; lytic transglycosylase catalytic subunit 600731 10481597 Alide2_0576 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004386508.1 598749 D 596154 CDS YP_004386509.1 330823206 10481598 complement(600794..601321) 1 NC_015422.1 KEGG: ajs:Ajs_0510 cytochrome b561; cytochrome b561 601321 10481598 Alide2_0577 Alicycliphilus denitrificans K601 cytochrome b561 YP_004386509.1 600794 R 596154 CDS YP_004386510.1 330823207 10481599 complement(601321..601593) 1 NC_015422.1 KEGG: dia:Dtpsy_0527 putative signal peptide protein; hypothetical protein 601593 10481599 Alide2_0578 Alicycliphilus denitrificans K601 hypothetical protein YP_004386510.1 601321 R 596154 CDS YP_004386511.1 330823208 10481600 complement(601730..602413) 1 NC_015422.1 HAMAP: PKHD-type hydroxylase ybiX; PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ajs:Ajs_0512 putative hydroxylase; SMART: Prolyl 4-hydroxylase, alpha subunit; PKHD-type hydroxylase ybiX 602413 10481600 Alide2_0579 Alicycliphilus denitrificans K601 PKHD-type hydroxylase ybiX YP_004386511.1 601730 R 596154 CDS YP_004386512.1 330823209 10481601 complement(602407..603504) 1 NC_015422.1 KEGG: ajs:Ajs_0513 (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent dehydrogenase; (S)-2-hydroxy-acid oxidase 603504 10481601 Alide2_0580 Alicycliphilus denitrificans K601 (S)-2-hydroxy-acid oxidase YP_004386512.1 602407 R 596154 CDS YP_004386513.1 330823210 10481602 complement(603558..605846) 1 NC_015422.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: ajs:Ajs_0514 TonB-dependent receptor; TonB-dependent receptor 605846 10481602 Alide2_0581 Alicycliphilus denitrificans K601 TonB-dependent receptor YP_004386513.1 603558 R 596154 CDS YP_004386514.1 330823211 10481603 complement(606001..606927) 1 NC_015422.1 KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 606927 10481603 Alide2_0582 Alicycliphilus denitrificans K601 beta-lactamase domain-containing protein YP_004386514.1 606001 R 596154 CDS YP_004386515.1 330823212 10481604 complement(606946..608631) 1 NC_015422.1 KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 608631 10481604 Alide2_0583 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004386515.1 606946 R 596154 CDS YP_004386516.1 330823213 10481605 608754..609656 1 NC_015422.1 KEGG: dia:Dtpsy_0533 PGAP1 family protein; PGAP1 family protein 609656 10481605 Alide2_0584 Alicycliphilus denitrificans K601 PGAP1 family protein YP_004386516.1 608754 D 596154 CDS YP_004386517.1 330823214 10481606 complement(609759..610976) 1 NC_015422.1 PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: dia:Dtpsy_0542 beta-ketoacyl synthase; SMART: Polyketide synthase, beta-ketoacyl synthase domain; 3-ketoacyl-ACP synthase I 610976 10481606 Alide2_0585 Alicycliphilus denitrificans K601 3-ketoacyl-ACP synthase I YP_004386517.1 609759 R 596154 CDS YP_004386518.1 330823215 10481607 complement(610991..611497) 1 NC_015422.1 TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: dia:Dtpsy_0541 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; 3-hydroxyacyl-ACP dehydratase 611497 10481607 Alide2_0586 Alicycliphilus denitrificans K601 3-hydroxyacyl-ACP dehydratase YP_004386518.1 610991 R 596154 CDS YP_004386519.1 330823216 10481608 complement(611586..613175) 1 NC_015422.1 KEGG: ajs:Ajs_0524 apolipoprotein N-acyltransferase; TIGRFAM: Apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 613175 10481608 Alide2_0587 Alicycliphilus denitrificans K601 apolipoprotein N-acyltransferase YP_004386519.1 611586 R 596154 CDS YP_004386520.1 330823217 10481609 complement(613175..614062) 1 NC_015422.1 PFAM: Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: ajs:Ajs_0523 CBS domain-containing protein; hypothetical protein 614062 10481609 Alide2_0588 Alicycliphilus denitrificans K601 hypothetical protein YP_004386520.1 613175 R 596154 CDS YP_004386521.1 330823218 10481610 complement(614173..614874) 1 NC_015422.1 KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; N-acetyltransferase GCN5 614874 10481610 Alide2_0589 Alicycliphilus denitrificans K601 N-acetyltransferase GCN5 YP_004386521.1 614173 R 596154 CDS YP_004386522.1 330823219 10481611 complement(615025..615510) 1 NC_015422.1 KEGG: dia:Dtpsy_0537 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator 615510 10481611 Alide2_0590 Alicycliphilus denitrificans K601 AsnC family transcriptional regulator YP_004386522.1 615025 R 596154 CDS YP_004386523.1 330823220 10481612 615670..616791 1 NC_015422.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: ajs:Ajs_0520 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 616791 10481612 Alide2_0591 Alicycliphilus denitrificans K601 4-hydroxyphenylpyruvate dioxygenase YP_004386523.1 615670 D 596154 CDS YP_004386524.1 330823221 10481613 616793..617617 1 NC_015422.1 TIGRFAM: Phenylalanine-4-hydroxylase, monomeric form; KEGG: dia:Dtpsy_0534 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase, C-terminal; phenylalanine-4-hydroxylase 617617 10481613 Alide2_0592 Alicycliphilus denitrificans K601 phenylalanine-4-hydroxylase YP_004386524.1 616793 D 596154 CDS YP_004386525.1 330823222 10481614 617758..618993 1 NC_015422.1 KEGG: pol:Bpro_0273 branched-chain alpha-keto acid dehydrogenase E1 component; PFAM: Dehydrogenase, E1 component; 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal; 3-methyl-2-oxobutanoate dehydrogenase 618993 10481614 Alide2_0593 Alicycliphilus denitrificans K601 3-methyl-2-oxobutanoate dehydrogenase YP_004386525.1 617758 D 596154 CDS YP_004386526.1 330823223 10481615 619033..620037 1 NC_015422.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: pol:Bpro_0274 branched-chain alpha-keto acid dehydrogenase E1 component; SMART: Transketolase-like, pyrimidine-binding domain; 3-methyl-2-oxobutanoate dehydrogenase 620037 10481615 Alide2_0594 Alicycliphilus denitrificans K601 3-methyl-2-oxobutanoate dehydrogenase YP_004386526.1 619033 D 596154 CDS YP_004386527.1 330823224 10481616 620039..621346 1 NC_015422.1 KEGG: axy:AXYL_02631 lipoamide acyltransferase component of branched-chain alpha-keto aciddehydrogenase complex; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; dihydrolipoyllysine-residue (2-methylpropanoyl)transferase 621346 10481616 Alide2_0595 Alicycliphilus denitrificans K601 dihydrolipoyllysine-residue (2-methylpropanoyl)transferase YP_004386527.1 620039 D 596154 CDS YP_004386528.1 330823225 10481617 621354..622751 1 NC_015422.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: axy:AXYL_02632 dihydrolipoyl dehydrogenase 2; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; dihydrolipoamide dehydrogenase 622751 10481617 Alide2_0596 Alicycliphilus denitrificans K601 dihydrolipoamide dehydrogenase YP_004386528.1 621354 D 596154 CDS YP_004386529.1 330823226 10481618 622856..623794 1 NC_015422.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: dac:Daci_1288 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; glycyl-tRNA synthetase subunit alpha 623794 10481618 Alide2_0597 Alicycliphilus denitrificans K601 glycyl-tRNA synthetase subunit alpha YP_004386529.1 622856 D 596154 CDS YP_004386530.1 330823227 10481619 623814..625979 1 NC_015422.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, beta subunit; KEGG: ajs:Ajs_0528 glycine--tRNA ligase; glycyl-tRNA synthetase subunit beta 625979 10481619 Alide2_0598 Alicycliphilus denitrificans K601 glycyl-tRNA synthetase subunit beta YP_004386530.1 623814 D 596154 CDS YP_004386531.1 330823228 10481620 626025..626600 1 NC_015422.1 TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; KEGG: dia:Dtpsy_0545 histidinol-phosphate phosphatase family protein; histidinol-phosphate phosphatase family protein 626600 10481620 Alide2_0599 Alicycliphilus denitrificans K601 histidinol-phosphate phosphatase family protein YP_004386531.1 626025 D 596154 CDS YP_004386532.1 330823229 10481621 626851..627594 1 NC_015422.1 KEGG: ajs:Ajs_0530 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 627594 10481621 Alide2_0600 Alicycliphilus denitrificans K601 phospholipid/glycerol acyltransferase YP_004386532.1 626851 D 596154 CDS YP_004386533.1 330823230 10481622 627597..628400 1 NC_015422.1 PFAM: Protein of unknown function DUF45; KEGG: dia:Dtpsy_0547 protein of unknown function DUF45; hypothetical protein 628400 10481622 Alide2_0601 Alicycliphilus denitrificans K601 hypothetical protein YP_004386533.1 627597 D 596154 CDS YP_004386534.1 330823231 10481623 628461..628895 1 NC_015422.1 SMART: Rhodanese-like; KEGG: ajs:Ajs_0532 rhodanese domain-containing protein; rhodanese-like protein 628895 10481623 Alide2_0602 Alicycliphilus denitrificans K601 rhodanese-like protein YP_004386534.1 628461 D 596154 CDS YP_004386535.1 330823232 10481624 complement(628900..629388) 1 NC_015422.1 KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM; PFAM: Transport-associated; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; transport-associated protein 629388 10481624 Alide2_0603 Alicycliphilus denitrificans K601 transport-associated protein YP_004386535.1 628900 R 596154 CDS YP_004386536.1 330823233 10481625 629535..630311 1 NC_015422.1 KEGG: dia:Dtpsy_0550 pantothenate kinase; TIGRFAM: Type III pantothenate kinase; PFAM: Type III pantothenate kinase; Baf family transcriptional activator 630311 10481625 Alide2_0604 Alicycliphilus denitrificans K601 Baf family transcriptional activator YP_004386536.1 629535 D 596154 CDS YP_004386537.1 330823234 10481626 complement(630308..630985) 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0551 transcriptional regulator, TetR family; TetR family transcriptional regulator 630985 10481626 Alide2_0605 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004386537.1 630308 R 596154 CDS YP_004386538.1 330823235 10481627 complement(631143..631586) 1 NC_015422.1 KEGG: dia:Dtpsy_0552 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: Poly granule associated; PFAM: Poly granule associated; poly(hydroxyalkanoate) granule-associated protein 631586 10481627 Alide2_0606 Alicycliphilus denitrificans K601 poly(hydroxyalkanoate) granule-associated protein YP_004386538.1 631143 R 596154 CDS YP_004386539.1 330823236 10481628 631785..632846 1 NC_015422.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase 632846 10481628 Alide2_0607 Alicycliphilus denitrificans K601 dTDP-glucose 4,6-dehydratase YP_004386539.1 631785 D 596154 CDS YP_004386540.1 330823237 10481629 632843..633721 1 NC_015422.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: ajs:Ajs_0538 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 633721 10481629 Alide2_0608 Alicycliphilus denitrificans K601 dTDP-4-dehydrorhamnose reductase YP_004386540.1 632843 D 596154 CDS YP_004386541.1 330823238 10481630 633732..634622 1 NC_015422.1 TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: bvi:Bcep1808_3215 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 634622 10481630 Alide2_0609 Alicycliphilus denitrificans K601 glucose-1-phosphate thymidylyltransferase YP_004386541.1 633732 D 596154 CDS YP_004386542.1 330823239 10481631 634622..635167 1 NC_015422.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: dia:Dtpsy_0556 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; dTDP-4-dehydrorhamnose 3,5-epimerase 635167 10481631 Alide2_0610 Alicycliphilus denitrificans K601 dTDP-4-dehydrorhamnose 3,5-epimerase YP_004386542.1 634622 D 596154 CDS YP_004386543.1 330823240 10481632 635158..636339 1 NC_015422.1 PFAM: Domain of unknown function DUF1972; Glycosyl transferase, group 1; KEGG: gme:Gmet_2169 glycosyltransferase-like protein; hypothetical protein 636339 10481632 Alide2_0611 Alicycliphilus denitrificans K601 hypothetical protein YP_004386543.1 635158 D 596154 CDS YP_004386544.1 330823241 10481633 636336..637247 1 NC_015422.1 KEGG: ajs:Ajs_0541 rhamnosyltransferase; TIGRFAM: Rhamnosyltransferase; PFAM: Glycosyl transferase, family 2; rhamnosyltransferase 637247 10481633 Alide2_0612 Alicycliphilus denitrificans K601 rhamnosyltransferase YP_004386544.1 636336 D 596154 CDS YP_004386545.1 330823242 10481634 637255..638958 1 NC_015422.1 PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: vei:Veis_0688 general secretory pathway protein E; type II secretion system protein E 638958 10481634 Alide2_0613 Alicycliphilus denitrificans K601 type II secretion system protein E YP_004386545.1 637255 D 596154 CDS YP_004386546.1 330823243 10481635 638951..640162 1 NC_015422.1 PFAM: Type II secretion system F domain; KEGG: eba:ebA1619 general secretion pathway protein F; type II secretion system F domain-containing protein 640162 10481635 Alide2_0614 Alicycliphilus denitrificans K601 type II secretion system F domain-containing protein YP_004386546.1 638951 D 596154 CDS YP_004386547.1 330823244 10481636 640189..640629 1 NC_015422.1 KEGG: aav:Aave_4158 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal; general secretion pathway protein G 640629 10481636 Alide2_0615 Alicycliphilus denitrificans K601 general secretion pathway protein G YP_004386547.1 640189 D 596154 CDS YP_004386548.1 330823245 10481637 640659..641141 1 NC_015422.1 KEGG: dac:Daci_1302 general secretion pathway protein H; general secretion pathway protein H 641141 10481637 Alide2_0616 Alicycliphilus denitrificans K601 general secretion pathway protein H YP_004386548.1 640659 D 596154 CDS YP_004386549.1 330823246 10481638 641138..641539 1 NC_015422.1 KEGG: aav:Aave_4156 general secretion pathway protein I; general secretion pathway protein I 641539 10481638 Alide2_0617 Alicycliphilus denitrificans K601 general secretion pathway protein I YP_004386549.1 641138 D 596154 CDS YP_004386550.1 330823247 10481639 641536..642147 1 NC_015422.1 KEGG: vei:Veis_0683 general secretion pathway protein J; general secretion pathway protein J 642147 10481639 Alide2_0618 Alicycliphilus denitrificans K601 general secretion pathway protein J YP_004386550.1 641536 D 596154 CDS YP_004386551.1 330823248 10481640 642144..643055 1 NC_015422.1 KEGG: eba:ebA1612 general secretory pathway protein K; hypothetical protein 643055 10481640 Alide2_0619 Alicycliphilus denitrificans K601 hypothetical protein YP_004386551.1 642144 D 596154 CDS YP_004386552.1 330823249 10481641 643052..644065 1 NC_015422.1 PFAM: Fimbrial assembly; KEGG: aav:Aave_4153 fimbrial assembly family protein; fimbrial assembly family protein 644065 10481641 Alide2_0620 Alicycliphilus denitrificans K601 fimbrial assembly family protein YP_004386552.1 643052 D 596154 CDS YP_004386553.1 330823250 10481642 644062..644610 1 NC_015422.1 PFAM: General secretion pathway protein M; KEGG: vei:Veis_0680 general secretion pathway protein M; general secretion pathway protein M 644610 10481642 Alide2_0621 Alicycliphilus denitrificans K601 general secretion pathway protein M YP_004386553.1 644062 D 596154 CDS YP_004386554.1 330823251 10481643 644607..644948 1 NC_015422.1 hypothetical protein 644948 10481643 Alide2_0622 Alicycliphilus denitrificans K601 hypothetical protein YP_004386554.1 644607 D 596154 CDS YP_004386555.1 330823252 10481644 complement(644933..645226) 1 NC_015422.1 KEGG: pol:Bpro_2744 hypothetical protein; hypothetical protein 645226 10481644 Alide2_0623 Alicycliphilus denitrificans K601 hypothetical protein YP_004386555.1 644933 R 596154 CDS YP_004386556.1 330823253 10481645 complement(645192..646322) 1 NC_015422.1 KEGG: pol:Bpro_2745 putative transposase; transposase 646322 10481645 Alide2_0624 Alicycliphilus denitrificans K601 transposase YP_004386556.1 645192 R 596154 CDS YP_004386557.1 330823254 10481646 646531..647694 1 NC_015422.1 PFAM: Glycosyl transferase, group 1; KEGG: dbr:Deba_0993 glycosyl transferase group 1; group 1 glycosyl transferase 647694 10481646 Alide2_0625 Alicycliphilus denitrificans K601 group 1 glycosyl transferase YP_004386557.1 646531 D 596154 CDS YP_004386558.1 330823255 10481647 647765..648589 1 NC_015422.1 PFAM: ABC-2 type transporter; KEGG: mag:amb1063 ABC-type polysaccharide/polyol phosphate export systems; ABC transporter 648589 10481647 Alide2_0626 Alicycliphilus denitrificans K601 ABC transporter YP_004386558.1 647765 D 596154 CDS YP_004386559.1 330823256 10481648 648589..649809 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: vei:Veis_0673 ABC transporter related; SMART: ATPase, AAA+ type, core; teichoic-acid-transporting AtPase 649809 10481648 Alide2_0627 Alicycliphilus denitrificans K601 teichoic-acid-transporting AtPase YP_004386559.1 648589 D 596154 CDS YP_004386560.1 330823257 10481649 649791..650702 1 NC_015422.1 hypothetical protein 650702 10481649 Alide2_0628 Alicycliphilus denitrificans K601 hypothetical protein YP_004386560.1 649791 D 596154 CDS YP_004386561.1 330823258 10481650 650695..651699 1 NC_015422.1 PFAM: Methyltransferase type 11; KEGG: azl:AZL_f01750 hypothetical protein; type 11 methyltransferase 651699 10481650 Alide2_0629 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004386561.1 650695 D 596154 CDS YP_004386562.1 330823259 10481651 651716..652360 1 NC_015422.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: rso:RSc0977 putative transglycosylase signal peptide protein; lytic transglycosylase catalytic subunit 652360 10481651 Alide2_0630 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004386562.1 651716 D 596154 CDS YP_004386563.1 330823260 10481652 652394..653494 1 NC_015422.1 PFAM: Glycosyl transferase, family 4; KEGG: vei:Veis_1227 glycosyl transferase family protein; glycosyl transferase family protein 653494 10481652 Alide2_0631 Alicycliphilus denitrificans K601 glycosyl transferase family protein YP_004386563.1 652394 D 596154 CDS YP_004386564.1 330823261 10481653 653555..654445 1 NC_015422.1 TIGRFAM: Acetylglutamate kinase; KEGG: ajs:Ajs_0588 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; acetylglutamate kinase 654445 10481653 Alide2_0632 Alicycliphilus denitrificans K601 acetylglutamate kinase YP_004386564.1 653555 D 596154 CDS YP_004386565.1 330823262 10481654 654628..655263 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_0589 nucleoid occlusion protein; TetR family transcriptional regulator 655263 10481654 Alide2_0633 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004386565.1 654628 D 596154 CDS YP_004386566.1 330823263 10481655 655405..656061 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0570 transcriptional regulator, TetR family; TetR family transcriptional regulator 656061 10481655 Alide2_0634 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004386566.1 655405 D 596154 CDS YP_004386567.1 330823264 10481656 656109..657905 1 NC_015422.1 KEGG: dia:Dtpsy_0571 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 657905 10481656 Alide2_0635 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004386567.1 656109 D 596154 CDS YP_004386568.1 330823265 10481657 657976..658404 1 NC_015422.1 KEGG: dia:Dtpsy_0572 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2147; hypothetical protein 658404 10481657 Alide2_0636 Alicycliphilus denitrificans K601 hypothetical protein YP_004386568.1 657976 D 596154 CDS YP_004386569.1 330823266 10481658 658426..660828 1 NC_015422.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG: dac:Daci_1339 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein 660828 10481658 Alide2_0637 Alicycliphilus denitrificans K601 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein YP_004386569.1 658426 D 596154 CDS YP_004386570.1 330823267 10481659 660849..662042 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: xtr:100490800 3-ketoacyl-CoA thiolase-like; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 662042 10481659 Alide2_0638 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004386570.1 660849 D 596154 CDS YP_004386571.1 330823268 10481660 662086..662919 1 NC_015422.1 KEGG: dia:Dtpsy_0576 hypothetical protein; hypothetical protein 662919 10481660 Alide2_0639 Alicycliphilus denitrificans K601 hypothetical protein YP_004386571.1 662086 D 596154 CDS YP_004386572.1 330823269 10481661 662927..663703 1 NC_015422.1 PFAM: Crotonase, core; KEGG: dia:Dtpsy_0577 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 663703 10481661 Alide2_0640 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004386572.1 662927 D 596154 CDS YP_004386573.1 330823270 10481662 664048..664608 1 NC_015422.1 PFAM: Protein of unknown function DUF583; KEGG: dia:Dtpsy_0579 protein of unknown function DUF583; hypothetical protein 664608 10481662 Alide2_0641 Alicycliphilus denitrificans K601 hypothetical protein YP_004386573.1 664048 D 596154 CDS YP_004386574.1 330823271 10481663 complement(664660..665085) 1 NC_015422.1 PFAM: Thioesterase superfamily; KEGG: ajs:Ajs_0601 thioesterase superfamily protein; thioesterase superfamily protein 665085 10481663 Alide2_0642 Alicycliphilus denitrificans K601 thioesterase superfamily protein YP_004386574.1 664660 R 596154 CDS YP_004386575.1 330823272 10481664 665128..666939 1 NC_015422.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: ajs:Ajs_0602 ABC transporter related; SMART: ATPase, AAA+ type, core; xenobiotic-transporting ATPase 666939 10481664 Alide2_0643 Alicycliphilus denitrificans K601 xenobiotic-transporting ATPase YP_004386575.1 665128 D 596154 CDS YP_004386576.1 330823273 10481665 666989..667321 1 NC_015422.1 PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core; KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase 667321 10481665 Alide2_0644 Alicycliphilus denitrificans K601 MazG nucleotide pyrophosphohydrolase YP_004386576.1 666989 D 596154 CDS YP_004386577.1 330823274 10481666 complement(667376..668407) 1 NC_015422.1 KEGG: ajs:Ajs_0604 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; TRAP dicarboxylate transporter subunit DctP 668407 10481666 Alide2_0645 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctP YP_004386577.1 667376 R 596154 CDS YP_004386578.1 330823275 10481667 complement(668431..669729) 1 NC_015422.1 KEGG: ajs:Ajs_0605 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 669729 10481667 Alide2_0646 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctM YP_004386578.1 668431 R 596154 CDS YP_004386579.1 330823276 10481668 complement(669726..670307) 1 NC_015422.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ajs:Ajs_0606 tripartite ATP-independent periplasmic transporter DctQ; TRAP dicarboxylate transporter subunit DctQ 670307 10481668 Alide2_0647 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctQ YP_004386579.1 669726 R 596154 CDS YP_004386580.1 330823277 10481669 670474..671421 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0586 transcriptional regulator, LysR family; LysR family transcriptional regulator 671421 10481669 Alide2_0648 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386580.1 670474 D 596154 CDS YP_004386581.1 330823278 10481670 671625..672524 1 NC_015422.1 KEGG: dia:Dtpsy_0588 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 672524 10481670 Alide2_0649 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004386581.1 671625 D 596154 CDS YP_004386582.1 330823279 10481671 672628..673380 1 NC_015422.1 KEGG: dia:Dtpsy_0589 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease 673380 10481671 Alide2_0650 Alicycliphilus denitrificans K601 polar amino acid ABC transporter permease YP_004386582.1 672628 D 596154 CDS YP_004386583.1 330823280 10481672 673382..674053 1 NC_015422.1 KEGG: ctt:CtCNB1_4180 glutamate/aspartate transport systempermease protein GltK; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease 674053 10481672 Alide2_0651 Alicycliphilus denitrificans K601 polar amino acid ABC transporter permease YP_004386583.1 673382 D 596154 CDS YP_004386584.1 330823281 10481673 674078..674815 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0591 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 674815 10481673 Alide2_0652 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004386584.1 674078 D 596154 CDS YP_004386585.1 330823282 10481674 complement(674921..675955) 1 NC_015422.1 KEGG: dia:Dtpsy_0592 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin; ornithine cyclodeaminase 675955 10481674 Alide2_0653 Alicycliphilus denitrificans K601 ornithine cyclodeaminase YP_004386585.1 674921 R 596154 CDS YP_004386586.1 330823283 10481675 complement(676016..676837) 1 NC_015422.1 KEGG: ajs:Ajs_0616 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3; HAD superfamily hydrolase 676837 10481675 Alide2_0654 Alicycliphilus denitrificans K601 HAD superfamily hydrolase YP_004386586.1 676016 R 596154 CDS YP_004386587.1 330823284 10481676 complement(676840..678465) 1 NC_015422.1 KEGG: xtr:100494427 peptide chain release factor 3-like; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; peptide chain release factor 3 678465 10481676 Alide2_0655 Alicycliphilus denitrificans K601 peptide chain release factor 3 YP_004386587.1 676840 R 596154 CDS YP_004386588.1 330823285 10481677 complement(678568..679338) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0646 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 679338 10481677 Alide2_0656 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004386588.1 678568 R 596154 CDS YP_004386589.1 330823286 10481678 679580..681010 1 NC_015422.1 TIGRFAM: Adenosylhomocysteinase; KEGG: dia:Dtpsy_0597 S-adenosyl-L-homocysteine hydrolase; PFAM: Adenosylhomocysteinase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 681010 10481678 Alide2_0657 Alicycliphilus denitrificans K601 adenosylhomocysteinase YP_004386589.1 679580 D 596154 CDS YP_004386590.1 330823287 10481679 681117..682118 1 NC_015422.1 PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_0619 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 682118 10481679 Alide2_0658 Alicycliphilus denitrificans K601 ribosomal RNA methyltransferase RrmJ/FtsJ YP_004386590.1 681117 D 596154 CDS YP_004386591.1 330823288 10481680 682115..682942 1 NC_015422.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dia:Dtpsy_0599 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 682942 10481680 Alide2_0659 Alicycliphilus denitrificans K601 5,10-methylenetetrahydrofolate reductase YP_004386591.1 682115 D 596154 CDS YP_004386592.1 330823289 10481681 682936..683688 1 NC_015422.1 manually curated; TIGRFAM: Rare lipoprotein A, bacterial; KEGG: dia:Dtpsy_0601 rare lipoprotein A; PFAM: Barwin-related endoglucanase; rare lipoprotein A 683688 10481681 Alide2_0660 Alicycliphilus denitrificans K601 rare lipoprotein A YP_004386592.1 682936 D 596154 CDS YP_004386593.1 330823290 10481682 complement(683689..684606) 1 NC_015422.1 PFAM: Protein of unknown function DUF519; KEGG: dia:Dtpsy_0602 protein of unknown function DUF519; hypothetical protein 684606 10481682 Alide2_0661 Alicycliphilus denitrificans K601 hypothetical protein YP_004386593.1 683689 R 596154 CDS YP_004386594.1 330823291 10481683 684783..686579 1 NC_015422.1 KEGG: ajs:Ajs_0624 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; serine/threonine protein kinase 686579 10481683 Alide2_0662 Alicycliphilus denitrificans K601 serine/threonine protein kinase YP_004386594.1 684783 D 596154 CDS YP_004386595.1 330823292 10481684 686685..687152 1 NC_015422.1 KEGG: xtr:100489998 50S ribosomal protein L13-like; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13; 50S ribosomal protein L13 687152 10481684 Alide2_0663 Alicycliphilus denitrificans K601 50S ribosomal protein L13 YP_004386595.1 686685 D 596154 CDS YP_004386596.1 330823293 10481685 687162..687554 1 NC_015422.1 PFAM: Ribosomal protein S9; KEGG: xtr:100487283 30S ribosomal protein S9-like; 30S ribosomal protein S9 687554 10481685 Alide2_0664 Alicycliphilus denitrificans K601 30S ribosomal protein S9 YP_004386596.1 687162 D 596154 CDS YP_004386597.1 330823294 10481686 687718..688092 1 NC_015422.1 KEGG: dia:Dtpsy_0608 iron-sulfur cluster insertion protein ErpA; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly accessory protein 688092 10481686 Alide2_0665 Alicycliphilus denitrificans K601 iron-sulfur cluster assembly accessory protein YP_004386597.1 687718 D 596154 CDS YP_004386598.1 330823295 10481687 complement(688704..689828) 1 NC_015422.1 manually curated; HAMAP: Anhydro-N-acetylmuramic acid kinase; KEGG: dia:Dtpsy_0609 anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase; anhydro-N-acetylmuramic acid kinase 689828 10481687 Alide2_0666 Alicycliphilus denitrificans K601 anhydro-N-acetylmuramic acid kinase YP_004386598.1 688704 R 596154 CDS YP_004386599.1 330823296 10481688 complement(689844..691226) 1 NC_015422.1 PFAM: Peptidase M23; KEGG: ajs:Ajs_0631 peptidase M23B; peptidase M23 691226 10481688 Alide2_0667 Alicycliphilus denitrificans K601 peptidase M23 YP_004386599.1 689844 R 596154 CDS YP_004386600.1 330823297 10481689 691398..692630 1 NC_015422.1 KEGG: ajs:Ajs_0632 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; manually curated; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; SMART: RNA-binding S4; tyrosyl-tRNA synthetase 692630 10481689 Alide2_0668 Alicycliphilus denitrificans K601 tyrosyl-tRNA synthetase YP_004386600.1 691398 D 596154 CDS YP_004386601.1 330823298 10481690 complement(692692..693657) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0634 LysR family transcriptional regulator; LysR family transcriptional regulator 693657 10481690 Alide2_0669 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386601.1 692692 R 596154 CDS YP_004386602.1 330823299 10481691 693709..695133 1 NC_015422.1 TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: ajs:Ajs_0636 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat; UDP-N-acetylglucosamine pyrophosphorylase 695133 10481691 Alide2_0670 Alicycliphilus denitrificans K601 UDP-N-acetylglucosamine pyrophosphorylase YP_004386602.1 693709 D 596154 CDS YP_004386603.1 330823300 10481692 695130..695912 1 NC_015422.1 KEGG: ajs:Ajs_0637 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; histidine kinase 695912 10481692 Alide2_0671 Alicycliphilus denitrificans K601 histidine kinase YP_004386603.1 695130 D 596154 CDS YP_004386604.1 330823301 10481693 complement(695941..696276) 1 NC_015422.1 KEGG: dia:Dtpsy_0617 MerR family transcriptional regulator; MerR family transcriptional regulator 696276 10481693 Alide2_0672 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004386604.1 695941 R 596154 CDS YP_004386605.1 330823302 10481694 complement(696279..697274) 1 NC_015422.1 KEGG: dia:Dtpsy_0618 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal; heat shock protein DnaJ domain-containing protein 697274 10481694 Alide2_0673 Alicycliphilus denitrificans K601 heat shock protein DnaJ domain-containing protein YP_004386605.1 696279 R 596154 CDS YP_004386606.1 330823303 10481695 complement(697379..697900) 1 NC_015422.1 KEGG: ajs:Ajs_0640 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator 697900 10481695 Alide2_0674 Alicycliphilus denitrificans K601 AsnC family transcriptional regulator YP_004386606.1 697379 R 596154 CDS YP_004386607.1 330823304 10481696 698005..699915 1 NC_015422.1 PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: dia:Dtpsy_0620 glucosamine--fructose-6-phosphate aminotransferase; glucosamine--fructose-6-phosphate aminotransferase 699915 10481696 Alide2_0675 Alicycliphilus denitrificans K601 glucosamine--fructose-6-phosphate aminotransferase YP_004386607.1 698005 D 596154 CDS YP_004386608.1 330823305 10481697 complement(700592..701395) 1 NC_015422.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 701395 10481697 Alide2_0676 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004386608.1 700592 R 596154 CDS YP_004386609.1 330823306 10481698 complement(701385..702911) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit 702911 10481698 Alide2_0677 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004386609.1 701385 R 596154 CDS YP_004386610.1 330823307 10481699 complement(702997..703221) 1 NC_015422.1 KEGG: ajs:Ajs_2916 transposase IS66; transposase IS66 703221 10481699 Alide2_0678 Alicycliphilus denitrificans K601 transposase IS66 YP_004386610.1 702997 R 596154 CDS YP_004386611.1 330823308 10481700 complement(703304..703636) 1 NC_015422.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 703636 10481700 Alide2_0679 Alicycliphilus denitrificans K601 IS66 Orf2 family protein YP_004386611.1 703304 R 596154 CDS YP_004386612.1 330823309 10481701 complement(703633..704061) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein 704061 10481701 Alide2_0680 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004386612.1 703633 R 596154 CDS YP_004386613.1 330823310 10481702 complement(704813..705067) 1 NC_015422.1 KEGG: ctt:CtCNB1_4017 hypothetical protein; hypothetical protein 705067 10481702 Alide2_0681 Alicycliphilus denitrificans K601 hypothetical protein YP_004386613.1 704813 R 596154 CDS YP_004386614.1 330823311 10481703 complement(705141..705929) 1 NC_015422.1 PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: ctt:CtCNB1_4018 oxidoreductase, molybdopterin binding protein; oxidoreductase molybdopterin binding protein 705929 10481703 Alide2_0682 Alicycliphilus denitrificans K601 oxidoreductase molybdopterin binding protein YP_004386614.1 705141 R 596154 CDS YP_004386615.1 330823312 10481704 complement(705926..706582) 1 NC_015422.1 KEGG: ctt:CtCNB1_4019 putative transmembrane hydrogenase cytochrome; transmembrane hydrogenase cytochrome 706582 10481704 Alide2_0683 Alicycliphilus denitrificans K601 transmembrane hydrogenase cytochrome YP_004386615.1 705926 R 596154 CDS YP_004386616.1 330823313 10481705 706678..707388 1 NC_015422.1 KEGG: pol:Bpro_0543 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 707388 10481705 Alide2_0684 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004386616.1 706678 D 596154 CDS YP_004386617.1 330823314 10481706 707385..708866 1 NC_015422.1 KEGG: vap:Vapar_2987 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 708866 10481706 Alide2_0685 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004386617.1 707385 D 596154 CDS YP_004386618.1 330823315 10481707 complement(708884..709231) 1 NC_015422.1 hypothetical protein 709231 10481707 Alide2_0686 Alicycliphilus denitrificans K601 hypothetical protein YP_004386618.1 708884 R 596154 CDS YP_004386619.1 330823316 10481708 complement(709407..710213) 1 NC_015422.1 TIGRFAM: PEP-CTERM anchor; PFAM: von Willebrand factor, type A; PEP-CTERM bacterial; KEGG: cja:CJA_0975 von Willebrand factor type A domain protein; SMART: von Willebrand factor, type A; PEP motif putative anchor domain-containing protein 710213 10481708 Alide2_0687 Alicycliphilus denitrificans K601 PEP motif putative anchor domain-containing protein YP_004386619.1 709407 R 596154 CDS YP_004386620.1 330823317 10481709 710624..712066 1 NC_015422.1 TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: rfr:Rfer_0711 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 712066 10481709 Alide2_0688 Alicycliphilus denitrificans K601 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_004386620.1 710624 D 596154 CDS YP_004386621.1 330823318 10481710 712290..712931 1 NC_015422.1 KEGG: rfr:Rfer_0658 polysaccharide export protein; TIGRFAM: PEP-CTERM, putative polysaccharide export protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; polysaccharide export protein 712931 10481710 Alide2_0689 Alicycliphilus denitrificans K601 polysaccharide export protein YP_004386621.1 712290 D 596154 CDS YP_004386622.1 330823319 10481711 712978..714540 1 NC_015422.1 manually curated; TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis; PFAM: Lipopolysaccharide biosynthesis; polysaccharide chain length determinant protein 714540 10481711 Alide2_0690 Alicycliphilus denitrificans K601 polysaccharide chain length determinant protein YP_004386622.1 712978 D 596154 CDS YP_004386623.1 330823320 10481712 714549..715511 1 NC_015422.1 manually curated; KEGG: app:CAP2UW1_1413 non-specific protein-tyrosine kinase; non-specific protein-tyrosine kinase 715511 10481712 Alide2_0691 Alicycliphilus denitrificans K601 non-specific protein-tyrosine kinase YP_004386623.1 714549 D 596154 CDS YP_004386624.1 330823321 10481713 715540..717195 1 NC_015422.1 TIGRFAM: Conserved hypothetical protein CHP03016, PEP-CTERM; KEGG: rfr:Rfer_0661 hypothetical protein; PEP-CTERM system associated protein 717195 10481713 Alide2_0692 Alicycliphilus denitrificans K601 PEP-CTERM system associated protein YP_004386624.1 715540 D 596154 CDS YP_004386625.1 330823322 10481714 717199..718299 1 NC_015422.1 KEGG: rfr:Rfer_0662 ATPase; TIGRFAM: ATPase, secretion system, PEP-CTERM, predicted; SMART: ATPase, AAA+ type, core; secretion ATPase 718299 10481714 Alide2_0693 Alicycliphilus denitrificans K601 secretion ATPase YP_004386625.1 717199 D 596154 CDS YP_004386626.1 330823323 10481715 718308..719174 1 NC_015422.1 KEGG: app:CAP2UW1_1417 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: PEP-CTERM locus, polysaccharide deactylase; PFAM: Polysaccharide deacetylase; polysaccharide deactylase family protein 719174 10481715 Alide2_0694 Alicycliphilus denitrificans K601 polysaccharide deactylase family protein YP_004386626.1 718308 D 596154 CDS YP_004386627.1 330823324 10481716 719182..720228 1 NC_015422.1 KEGG: rfr:Rfer_0665 hypothetical protein; manually curated; TIGRFAM: PEP-CTERM system-associated, FemAB-related; FemAB-like protein 720228 10481716 Alide2_0695 Alicycliphilus denitrificans K601 FemAB-like protein YP_004386627.1 719182 D 596154 CDS YP_004386628.1 330823325 10481717 720242..721480 1 NC_015422.1 KEGG: dar:Daro_2405 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp1; PFAM: Glycosyl transferase, group 1; sugar transferase 721480 10481717 Alide2_0696 Alicycliphilus denitrificans K601 sugar transferase YP_004386628.1 720242 D 596154 CDS YP_004386629.1 330823326 10481718 721458..723059 1 NC_015422.1 KEGG: rfr:Rfer_0666 hypothetical protein; TIGRFAM: Exosortase 1; Exosortase, EpsH; Methanolan biosynthesis EpsI; PFAM: Exosortase EpsH-related; exosortase 1 723059 10481718 Alide2_0697 Alicycliphilus denitrificans K601 exosortase 1 YP_004386629.1 721458 D 596154 CDS YP_004386630.1 330823327 10481719 723062..724972 1 NC_015422.1 TIGRFAM: Exosortase 1 system-associated amidotransferase 1; Asparagine synthase, glutamine-hydrolyzing; KEGG: rfr:Rfer_0669 asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; exosortase 1 system-associated amidotransferase 1 724972 10481719 Alide2_0698 Alicycliphilus denitrificans K601 exosortase 1 system-associated amidotransferase 1 YP_004386630.1 723062 D 596154 CDS YP_004386631.1 330823328 10481720 724965..726119 1 NC_015422.1 KEGG: rfr:Rfer_0668 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp2; PFAM: Glycosyl transferase, group 1; sugar transferase 726119 10481720 Alide2_0699 Alicycliphilus denitrificans K601 sugar transferase YP_004386631.1 724965 D 596154 CDS YP_004386632.1 330823329 10481721 726121..727275 1 NC_015422.1 PFAM: Glycosyl transferase, group 1; KEGG: rru:Rru_A3107 glycosyl transferase, group 1; group 1 glycosyl transferase 727275 10481721 Alide2_0700 Alicycliphilus denitrificans K601 group 1 glycosyl transferase YP_004386632.1 726121 D 596154 CDS YP_004386633.1 330823330 10481722 727275..728456 1 NC_015422.1 PFAM: Glycosyl transferase, group 1; KEGG: hse:Hsero_2751 glycosyltransferase 1 protein; group 1 glycosyl transferase 728456 10481722 Alide2_0701 Alicycliphilus denitrificans K601 group 1 glycosyl transferase YP_004386633.1 727275 D 596154 CDS YP_004386634.1 330823331 10481723 728443..730065 1 NC_015422.1 KEGG: tmz:Tmz1t_3254 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein; 4-amino-4-deoxy-L-arabinose transferase-like protein 730065 10481723 Alide2_0702 Alicycliphilus denitrificans K601 4-amino-4-deoxy-L-arabinose transferase-like protein YP_004386634.1 728443 D 596154 CDS YP_004386635.1 330823332 10481724 730090..730221 1 NC_015422.1 hypothetical protein 730221 10481724 Alide2_0703 Alicycliphilus denitrificans K601 hypothetical protein YP_004386635.1 730090 D 596154 CDS YP_004386636.1 330823333 10481725 730256..731587 1 NC_015422.1 TIGRFAM: Conserved hypothetical protein CHP03097, O-antigen ligase-related; KEGG: hse:Hsero_2764 O-antigen polymerase; wzy family polymerase 731587 10481725 Alide2_0704 Alicycliphilus denitrificans K601 wzy family polymerase YP_004386636.1 730256 D 596154 CDS YP_004386637.1 330823334 10481726 731584..732546 1 NC_015422.1 PFAM: Polysaccharide deacetylase; KEGG: neu:NE0847 hypothetical protein; polysaccharide deacetylase 732546 10481726 Alide2_0705 Alicycliphilus denitrificans K601 polysaccharide deacetylase YP_004386637.1 731584 D 596154 CDS YP_004386638.1 330823335 10481727 732543..733556 1 NC_015422.1 PFAM: Polysaccharide deacetylase; KEGG: tgr:Tgr7_2375 polysaccharide deacetylase; polysaccharide deacetylase 733556 10481727 Alide2_0706 Alicycliphilus denitrificans K601 polysaccharide deacetylase YP_004386638.1 732543 D 596154 CDS YP_004386639.1 330823336 10481728 733568..734605 1 NC_015422.1 KEGG: psl:Psta_3837 hypothetical protein; hypothetical protein 734605 10481728 Alide2_0707 Alicycliphilus denitrificans K601 hypothetical protein YP_004386639.1 733568 D 596154 CDS YP_004386640.1 330823337 10481729 complement(734606..735553) 1 NC_015422.1 PFAM: Glycosyl transferase, family 2; KEGG: tkm:TK90_2524 glycosyl transferase family 2; family 2 glycosyl transferase 735553 10481729 Alide2_0708 Alicycliphilus denitrificans K601 family 2 glycosyl transferase YP_004386640.1 734606 R 596154 CDS YP_004386641.1 330823338 10481730 complement(735666..737087) 1 NC_015422.1 PFAM: Polysaccharide biosynthesis protein; KEGG: nwa:Nwat_1744 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 737087 10481730 Alide2_0709 Alicycliphilus denitrificans K601 polysaccharide biosynthesis protein YP_004386641.1 735666 R 596154 CDS YP_004386642.1 330823339 10481731 complement(737184..738281) 1 NC_015422.1 KEGG: pol:Bpro_3996 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase 738281 10481731 Alide2_0710 Alicycliphilus denitrificans K601 UDP-glucose 4-epimerase YP_004386642.1 737184 R 596154 CDS YP_004386643.1 330823340 10481732 complement(738308..739585) 1 NC_015422.1 manually curated; TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: reu:Reut_B5375 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; nucleotide sugar dehydrogenase 739585 10481732 Alide2_0711 Alicycliphilus denitrificans K601 nucleotide sugar dehydrogenase YP_004386643.1 738308 R 596154 CDS YP_004386644.1 330823341 10481733 complement(740089..741981) 1 NC_015422.1 KEGG: hse:Hsero_2760 hypothetical protein; hypothetical protein 741981 10481733 Alide2_0712 Alicycliphilus denitrificans K601 hypothetical protein YP_004386644.1 740089 R 596154 CDS YP_004386645.1 330823342 10481734 742681..743748 1 NC_015422.1 manually curated; KEGG: hse:Hsero_2738 hypothetical protein; hypothetical protein 743748 10481734 Alide2_0713 Alicycliphilus denitrificans K601 hypothetical protein YP_004386645.1 742681 D 596154 CDS YP_004386646.1 330823343 10481735 complement(743851..744609) 1 NC_015422.1 KEGG: cyt:cce_4547 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein 744609 10481735 Alide2_0714 Alicycliphilus denitrificans K601 PEP motif putative anchor domain-containing protein YP_004386646.1 743851 R 596154 CDS YP_004386647.1 330823344 10481736 complement(744804..745646) 1 NC_015422.1 KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family protein; TIGRFAM: Hydrolase, ortholog 1, exosortase system type 1 associated; PFAM: Alpha/beta hydrolase fold-1; hydrolase 745646 10481736 Alide2_0715 Alicycliphilus denitrificans K601 hydrolase YP_004386647.1 744804 R 596154 CDS YP_004386648.1 330823345 10481737 complement(745643..746497) 1 NC_015422.1 TIGRFAM: Hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: app:CAP2UW1_4344 hydrolase, exosortase system type 1 associated; hydrolase 746497 10481737 Alide2_0716 Alicycliphilus denitrificans K601 hydrolase YP_004386648.1 745643 R 596154 CDS YP_004386649.1 330823346 10481738 complement(746499..746759) 1 NC_015422.1 KEGG: rfr:Rfer_0698 hypothetical protein; hypothetical protein 746759 10481738 Alide2_0717 Alicycliphilus denitrificans K601 hypothetical protein YP_004386649.1 746499 R 596154 CDS YP_004386650.1 330823347 10481739 746843..748489 1 NC_015422.1 TIGRFAM: Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; KEGG: app:CAP2UW1_1626 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase/ligase; acyl-CoA ligase 748489 10481739 Alide2_0718 Alicycliphilus denitrificans K601 acyl-CoA ligase YP_004386650.1 746843 D 596154 CDS YP_004386651.1 330823348 10481740 748476..749681 1 NC_015422.1 TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; KEGG: rfr:Rfer_0700 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal; pyridoxal-dependent decarboxylase 749681 10481740 Alide2_0719 Alicycliphilus denitrificans K601 pyridoxal-dependent decarboxylase YP_004386651.1 748476 D 596154 CDS YP_004386652.1 330823349 10481741 749684..751765 1 NC_015422.1 TIGRFAM: Signal transduction histidine kinase, PEP-CTERM system, putative; PFAM: ATPase-like, ATP-binding domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: rfr:Rfer_0703 periplasmic sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; multi-sensor signal transduction histidine kinase 751765 10481741 Alide2_0720 Alicycliphilus denitrificans K601 multi-sensor signal transduction histidine kinase YP_004386652.1 749684 D 596154 CDS YP_004386653.1 330823350 10481742 751774..753135 1 NC_015422.1 TIGRFAM: Signal transduction response regulator, PEP-CTERM system, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: rfr:Rfer_0704 two component, sigma54 specific, fis family transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; Fis family two component sigma54 specific transcriptional regulator 753135 10481742 Alide2_0721 Alicycliphilus denitrificans K601 Fis family two component sigma54 specific transcriptional regulator YP_004386653.1 751774 D 596154 CDS YP_004386654.1 330823351 10481743 753159..755939 1 NC_015422.1 KEGG: rfr:Rfer_0705 tetratricopeptide TPR_2; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein, putative; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; Tetratricopeptide TPR-1; PEP-CTERM system TPR-repeat lipoprotein 755939 10481743 Alide2_0722 Alicycliphilus denitrificans K601 PEP-CTERM system TPR-repeat lipoprotein YP_004386654.1 753159 D 596154 CDS YP_004386655.1 330823352 10481744 755989..756774 1 NC_015422.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: rfr:Rfer_0710 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap 756774 10481744 Alide2_0723 Alicycliphilus denitrificans K601 peptidase S1 and S6 chymotrypsin/Hap YP_004386655.1 755989 D 596154 CDS YP_004386656.1 330823353 10481745 complement(756802..757167) 1 NC_015422.1 KEGG: azo:azo0349 putative small multi-drug resistant family protein; small multi-drug resistant family protein 757167 10481745 Alide2_0724 Alicycliphilus denitrificans K601 small multi-drug resistant family protein YP_004386656.1 756802 R 596154 CDS YP_004386657.1 330823354 10481746 complement(757164..758612) 1 NC_015422.1 PFAM: UbiA prenyltransferase; KEGG: azo:azo0348 hypothetical protein; UbiA prenyltransferase 758612 10481746 Alide2_0725 Alicycliphilus denitrificans K601 UbiA prenyltransferase YP_004386657.1 757164 R 596154 CDS YP_004386658.1 330823355 10481747 complement(758662..759555) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_4993 LysR family transcriptional regulator; LysR family transcriptional regulator 759555 10481747 Alide2_0726 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386658.1 758662 R 596154 CDS YP_004386659.1 330823356 10481748 759717..760718 1 NC_015422.1 KEGG: dac:Daci_4992 hypothetical protein; hypothetical protein 760718 10481748 Alide2_0727 Alicycliphilus denitrificans K601 hypothetical protein YP_004386659.1 759717 D 596154 CDS YP_004386660.1 330823357 10481749 760730..762007 1 NC_015422.1 KEGG: ctt:CtCNB1_3962 hypothetical protein; hypothetical protein 762007 10481749 Alide2_0728 Alicycliphilus denitrificans K601 hypothetical protein YP_004386660.1 760730 D 596154 CDS YP_004386661.1 330823358 10481750 complement(762015..762275) 1 NC_015422.1 TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: dia:Dtpsy_0625 translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type; translation initiation factor IF-1 762275 10481750 Alide2_0729 Alicycliphilus denitrificans K601 translation initiation factor IF-1 YP_004386661.1 762015 R 596154 CDS YP_004386662.1 330823359 10481751 complement(762626..763279) 1 NC_015422.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: dia:Dtpsy_0631 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 763279 10481751 Alide2_0730 Alicycliphilus denitrificans K601 2OG-Fe(II) oxygenase YP_004386662.1 762626 R 596154 CDS YP_004386663.1 330823360 10481752 763370..764878 1 NC_015422.1 KEGG: ajs:Ajs_0653 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 764878 10481752 Alide2_0731 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004386663.1 763370 D 596154 CDS YP_004386664.1 330823361 10481753 764975..765694 1 NC_015422.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; KEGG: ctt:CtCNB1_2425 FAD-binding oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 765694 10481753 Alide2_0732 Alicycliphilus denitrificans K601 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_004386664.1 764975 D 596154 CDS YP_004386665.1 330823362 10481754 complement(765688..767277) 1 NC_015422.1 KEGG: vap:Vapar_3422 hypothetical protein; hypothetical protein 767277 10481754 Alide2_0733 Alicycliphilus denitrificans K601 hypothetical protein YP_004386665.1 765688 R 596154 CDS YP_004386666.1 330823363 10481755 complement(767289..767897) 1 NC_015422.1 PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; Peptidoglycan binding-like; KEGG: pph:Ppha_2260 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 767897 10481755 Alide2_0734 Alicycliphilus denitrificans K601 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_004386666.1 767289 R 596154 CDS YP_004386667.1 330823364 10481756 768068..768739 1 NC_015422.1 PFAM: DSBA-like thioredoxin domain; KEGG: ajs:Ajs_0654 DsbA oxidoreductase; DSBA oxidoreductase 768739 10481756 Alide2_0735 Alicycliphilus denitrificans K601 DSBA oxidoreductase YP_004386667.1 768068 D 596154 CDS YP_004386668.1 330823365 10481757 complement(768811..769293) 1 NC_015422.1 PFAM: Uncharacterised protein family CreA; KEGG: dia:Dtpsy_0634 CreA family protein; CreA family protein 769293 10481757 Alide2_0736 Alicycliphilus denitrificans K601 CreA family protein YP_004386668.1 768811 R 596154 CDS YP_004386669.1 330823366 10481758 complement(769290..771881) 1 NC_015422.1 TIGRFAM: Cyanophycin synthetase; KEGG: dia:Dtpsy_0635 cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; Mur ligase, C-terminal; cyanophycin synthetase 771881 10481758 Alide2_0737 Alicycliphilus denitrificans K601 cyanophycin synthetase YP_004386669.1 769290 R 596154 CDS YP_004386670.1 330823367 10481759 complement(771953..774133) 1 NC_015422.1 TIGRFAM: Cyanophycin synthetase; KEGG: ctt:CtCNB1_0610 cyanophycin synthetase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; cyanophycin synthetase 774133 10481759 Alide2_0738 Alicycliphilus denitrificans K601 cyanophycin synthetase YP_004386670.1 771953 R 596154 CDS YP_004386671.1 330823368 10481760 774383..776695 1 NC_015422.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: dia:Dtpsy_0637 ABC transporter related; SMART: ATPase, AAA+ type, core; xenobiotic-transporting ATPase 776695 10481760 Alide2_0739 Alicycliphilus denitrificans K601 xenobiotic-transporting ATPase YP_004386671.1 774383 D 596154 CDS YP_004386672.1 330823369 10481761 776710..777198 1 NC_015422.1 PFAM: Domain of unknown function DUF1854; KEGG: dia:Dtpsy_0638 hypothetical protein; hypothetical protein 777198 10481761 Alide2_0740 Alicycliphilus denitrificans K601 hypothetical protein YP_004386672.1 776710 D 596154 CDS YP_004386673.1 330823370 10481762 777339..777779 1 NC_015422.1 KEGG: dia:Dtpsy_0639 hypothetical protein; hypothetical protein 777779 10481762 Alide2_0741 Alicycliphilus denitrificans K601 hypothetical protein YP_004386673.1 777339 D 596154 CDS YP_004386674.1 330823371 10481763 777903..779957 1 NC_015422.1 TIGRFAM: Small GTP-binding protein; PFAM: Translation elongation factor EFG/EF2, domain IV; Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, C-terminal; KEGG: vap:Vapar_5542 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; small GTP-binding protein 779957 10481763 Alide2_0742 Alicycliphilus denitrificans K601 small GTP-binding protein YP_004386674.1 777903 D 596154 CDS YP_004386675.1 330823372 10481764 complement(779971..780903) 1 NC_015422.1 KEGG: vei:Veis_1630 5-nucleotidase; PFAM: 5-nucleotidase; 5'-nucleotidase 780903 10481764 Alide2_0743 Alicycliphilus denitrificans K601 5'-nucleotidase YP_004386675.1 779971 R 596154 CDS YP_004386676.1 330823373 10481765 complement(780908..782137) 1 NC_015422.1 KEGG: dia:Dtpsy_0642 general secretion pathway protein F; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain; general secretion pathway protein F 782137 10481765 Alide2_0744 Alicycliphilus denitrificans K601 general secretion pathway protein F YP_004386676.1 780908 R 596154 CDS YP_004386677.1 330823374 10481766 complement(782192..783187) 1 NC_015422.1 KEGG: ajs:Ajs_0664 luciferase family protein; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup; luciferase family oxidoreductase 783187 10481766 Alide2_0745 Alicycliphilus denitrificans K601 luciferase family oxidoreductase YP_004386677.1 782192 R 596154 CDS YP_004386678.1 330823375 10481767 783376..783903 1 NC_015422.1 KEGG: ajs:Ajs_0665 hypothetical protein; hypothetical protein 783903 10481767 Alide2_0746 Alicycliphilus denitrificans K601 hypothetical protein YP_004386678.1 783376 D 596154 CDS YP_004386679.1 330823376 10481768 complement(783913..785313) 1 NC_015422.1 TIGRFAM: Type II secretion system GspE; PFAM: Type II secretion system protein E; KEGG: dia:Dtpsy_0645 general secretory pathway protein E; SMART: ATPase, AAA+ type, core; general secretory pathway protein E 785313 10481768 Alide2_0747 Alicycliphilus denitrificans K601 general secretory pathway protein E YP_004386679.1 783913 R 596154 CDS YP_004386680.1 330823377 10481769 complement(785324..787657) 1 NC_015422.1 KEGG: dia:Dtpsy_0646 general secretion pathway protein D; TIGRFAM: Type II secretion system GspD; PFAM: Type II/III secretion system; NolW-like; general secretion pathway protein D 787657 10481769 Alide2_0748 Alicycliphilus denitrificans K601 general secretion pathway protein D YP_004386680.1 785324 R 596154 CDS YP_004386681.1 330823378 10481770 complement(787662..788477) 1 NC_015422.1 KEGG: ajs:Ajs_0668 putative general secretory pathway N transmembrane protein; general secretory pathway N transmembrane protein 788477 10481770 Alide2_0749 Alicycliphilus denitrificans K601 general secretory pathway N transmembrane protein YP_004386681.1 787662 R 596154 CDS YP_004386682.1 330823379 10481771 complement(788511..789020) 1 NC_015422.1 PFAM: General secretion pathway M protein; KEGG: ajs:Ajs_0669 hypothetical protein; general secretion pathway M protein 789020 10481771 Alide2_0750 Alicycliphilus denitrificans K601 general secretion pathway M protein YP_004386682.1 788511 R 596154 CDS YP_004386683.1 330823380 10481772 complement(789017..790249) 1 NC_015422.1 PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L; general secretion pathway L 790249 10481772 Alide2_0751 Alicycliphilus denitrificans K601 general secretion pathway L YP_004386683.1 789017 R 596154 CDS YP_004386684.1 330823381 10481773 complement(790317..791294) 1 NC_015422.1 KEGG: ajs:Ajs_0671 general secretion pathway protein K; general secretion pathway protein K 791294 10481773 Alide2_0752 Alicycliphilus denitrificans K601 general secretion pathway protein K YP_004386684.1 790317 R 596154 CDS YP_004386685.1 330823382 10481774 complement(791291..791980) 1 NC_015422.1 KEGG: ajs:Ajs_0672 hypothetical protein; hypothetical protein 791980 10481774 Alide2_0753 Alicycliphilus denitrificans K601 hypothetical protein YP_004386685.1 791291 R 596154 CDS YP_004386686.1 330823383 10481775 complement(791982..792347) 1 NC_015422.1 KEGG: dia:Dtpsy_0652 general secretion pathway protein I; TIGRFAM: General secretion pathway protein I; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein I/J; Prepilin-type cleavage/methylation, N-terminal; general secretion pathway protein I 792347 10481775 Alide2_0754 Alicycliphilus denitrificans K601 general secretion pathway protein I YP_004386686.1 791982 R 596154 CDS YP_004386687.1 330823384 10481776 complement(792616..793080) 1 NC_015422.1 KEGG: dia:Dtpsy_0653 general secretion pathway protein H; manually curated; TIGRFAM: Bacterial general secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal; general secretion pathway protein H 793080 10481776 Alide2_0755 Alicycliphilus denitrificans K601 general secretion pathway protein H YP_004386687.1 792616 R 596154 CDS YP_004386688.1 330823385 10481777 complement(793153..793560) 1 NC_015422.1 KEGG: aav:Aave_0925 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal; general secretion pathway protein G 793560 10481777 Alide2_0756 Alicycliphilus denitrificans K601 general secretion pathway protein G YP_004386688.1 793153 R 596154 CDS YP_004386689.1 330823386 10481778 793661..794107 1 NC_015422.1 KEGG: dia:Dtpsy_0655 hypothetical protein; hypothetical protein 794107 10481778 Alide2_0757 Alicycliphilus denitrificans K601 hypothetical protein YP_004386689.1 793661 D 596154 CDS YP_004386690.1 330823387 10481779 complement(794108..794674) 1 NC_015422.1 KEGG: dia:Dtpsy_0656 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase 794674 10481779 Alide2_0758 Alicycliphilus denitrificans K601 phosphoglycerate mutase YP_004386690.1 794108 R 596154 CDS YP_004386691.1 330823388 10481780 complement(794671..795489) 1 NC_015422.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; KEGG: dia:Dtpsy_0657 cobalamin-5-phosphate synthase CobS; cobalamin-5-phosphate synthase CobS 795489 10481780 Alide2_0759 Alicycliphilus denitrificans K601 cobalamin-5-phosphate synthase CobS YP_004386691.1 794671 R 596154 CDS YP_004386692.1 330823389 10481781 complement(795552..797117) 1 NC_015422.1 KEGG: dia:Dtpsy_0658 threonine dehydratase; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; threonine dehydratase, biosynthetic 797117 10481781 Alide2_0760 Alicycliphilus denitrificans K601 threonine dehydratase, biosynthetic YP_004386692.1 795552 R 596154 CDS YP_004386693.1 330823390 10481782 797399..797848 1 NC_015422.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: dia:Dtpsy_0659 OsmC family protein; OsmC family protein 797848 10481782 Alide2_0761 Alicycliphilus denitrificans K601 OsmC family protein YP_004386693.1 797399 D 596154 CDS YP_004386694.1 330823391 10481783 complement(797859..798476) 1 NC_015422.1 KEGG: dia:Dtpsy_0660 putative ubiquinone biosynthesis protein; ubiquinone biosynthesis protein 798476 10481783 Alide2_0762 Alicycliphilus denitrificans K601 ubiquinone biosynthesis protein YP_004386694.1 797859 R 596154 CDS YP_004386695.1 330823392 10481784 798705..799745 1 NC_015422.1 KEGG: aav:Aave_0932 porin; porin 799745 10481784 Alide2_0763 Alicycliphilus denitrificans K601 porin YP_004386695.1 798705 D 596154 CDS YP_004386696.1 330823393 10481785 799967..801178 1 NC_015422.1 PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_0662 porin gram-negative type; porin 801178 10481785 Alide2_0764 Alicycliphilus denitrificans K601 porin YP_004386696.1 799967 D 596154 CDS YP_004386697.1 330823394 10481786 801427..802410 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0664 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 802410 10481786 Alide2_0765 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386697.1 801427 D 596154 CDS YP_004386698.1 330823395 10481787 802412..803632 1 NC_015422.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: dia:Dtpsy_0665 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; amidohydrolase 803632 10481787 Alide2_0766 Alicycliphilus denitrificans K601 amidohydrolase YP_004386698.1 802412 D 596154 CDS YP_004386699.1 330823396 10481788 803710..804621 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0667 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 804621 10481788 Alide2_0767 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386699.1 803710 D 596154 CDS YP_004386700.1 330823397 10481789 804628..805602 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0668 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like; peptide ABC transporter ATPase 805602 10481789 Alide2_0768 Alicycliphilus denitrificans K601 peptide ABC transporter ATPase YP_004386700.1 804628 D 596154 CDS YP_004386701.1 330823398 10481790 805599..806615 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0669 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; peptide ABC transporter ATPase 806615 10481790 Alide2_0769 Alicycliphilus denitrificans K601 peptide ABC transporter ATPase YP_004386701.1 805599 D 596154 CDS YP_004386702.1 330823399 10481791 806658..807152 1 NC_015422.1 KEGG: dia:Dtpsy_0671 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP; hypothetical protein 807152 10481791 Alide2_0770 Alicycliphilus denitrificans K601 hypothetical protein YP_004386702.1 806658 D 596154 CDS YP_004386703.1 330823400 10481792 complement(807204..808049) 1 NC_015422.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: ajs:Ajs_0694 RpiR family transcriptional regulator; RpiR family transcriptional regulator 808049 10481792 Alide2_0771 Alicycliphilus denitrificans K601 RpiR family transcriptional regulator YP_004386703.1 807204 R 596154 CDS YP_004386704.1 330823401 10481793 808165..809115 1 NC_015422.1 KEGG: dia:Dtpsy_0674 transaldolase B; TIGRFAM: Transaldolase 1; PFAM: Transaldolase; transaldolase 809115 10481793 Alide2_0772 Alicycliphilus denitrificans K601 transaldolase YP_004386704.1 808165 D 596154 CDS YP_004386705.1 330823402 10481794 809112..810707 1 NC_015422.1 KEGG: ajs:Ajs_0697 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase 810707 10481794 Alide2_0773 Alicycliphilus denitrificans K601 glucose-6-phosphate isomerase YP_004386705.1 809112 D 596154 CDS YP_004386706.1 330823403 10481795 complement(810830..812476) 1 NC_015422.1 KEGG: aav:Aave_0945 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1; chaperonin GroEL 812476 10481795 Alide2_0774 Alicycliphilus denitrificans K601 chaperonin GroEL YP_004386706.1 810830 R 596154 CDS YP_004386707.1 330823404 10481796 complement(812574..812864) 1 NC_015422.1 KEGG: dac:Daci_5660 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10; chaperonin Cpn10 812864 10481796 Alide2_0775 Alicycliphilus denitrificans K601 chaperonin Cpn10 YP_004386707.1 812574 R 596154 CDS YP_004386708.1 330823405 10481797 complement(813066..814094) 1 NC_015422.1 KEGG: ajs:Ajs_0701 cytidyltransferase-like protein; TIGRFAM: Cytidyltransferase-related; PFAM: NUDIX hydrolase domain; Cytidylyltransferase; cytidyltransferase-like domain-containing protein 814094 10481797 Alide2_0776 Alicycliphilus denitrificans K601 cytidyltransferase-like domain-containing protein YP_004386708.1 813066 R 596154 CDS YP_004386709.1 330823406 10481798 complement(814108..815289) 1 NC_015422.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: dia:Dtpsy_0683 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; S-adenosylmethionine synthetase 815289 10481798 Alide2_0777 Alicycliphilus denitrificans K601 S-adenosylmethionine synthetase YP_004386709.1 814108 R 596154 CDS YP_004386710.1 330823407 10481799 815423..816277 1 NC_015422.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0706 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 816277 10481799 Alide2_0778 Alicycliphilus denitrificans K601 lipid A biosynthesis acyltransferase YP_004386710.1 815423 D 596154 CDS YP_004386711.1 330823408 10481800 816274..817155 1 NC_015422.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0707 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 817155 10481800 Alide2_0779 Alicycliphilus denitrificans K601 lipid A biosynthesis acyltransferase YP_004386711.1 816274 D 596154 CDS YP_004386712.1 330823409 10481801 complement(817196..818098) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_1352 LysR family transcriptional regulator; LysR family transcriptional regulator 818098 10481801 Alide2_0780 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386712.1 817196 R 596154 CDS YP_004386713.1 330823410 10481802 818195..819175 1 NC_015422.1 KEGG: vei:Veis_1351 fis family transcriptional regulator; fis family transcriptional regulator 819175 10481802 Alide2_0781 Alicycliphilus denitrificans K601 fis family transcriptional regulator YP_004386713.1 818195 D 596154 CDS YP_004386714.1 330823411 10481803 819190..820170 1 NC_015422.1 KEGG: cti:RALTA_B1946 conserved hypothetical protein UPF0065; hypothetical protein 820170 10481803 Alide2_0782 Alicycliphilus denitrificans K601 hypothetical protein YP_004386714.1 819190 D 596154 CDS YP_004386715.1 330823412 10481804 820197..821258 1 NC_015422.1 KEGG: vei:Veis_1349 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 821258 10481804 Alide2_0783 Alicycliphilus denitrificans K601 3-isopropylmalate dehydrogenase YP_004386715.1 820197 D 596154 CDS YP_004386716.1 330823413 10481805 821258..822079 1 NC_015422.1 PFAM: Amidohydrolase 2; KEGG: bbt:BBta_3003 hypothetical protein; amidohydrolase 2 822079 10481805 Alide2_0784 Alicycliphilus denitrificans K601 amidohydrolase 2 YP_004386716.1 821258 D 596154 CDS YP_004386717.1 330823414 10481806 complement(822067..822759) 1 NC_015422.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: aav:Aave_0983 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related; GTP-binding protein engB 822759 10481806 Alide2_0785 Alicycliphilus denitrificans K601 GTP-binding protein engB YP_004386717.1 822067 R 596154 CDS YP_004386718.1 330823415 10481807 822842..823480 1 NC_015422.1 PFAM: Cytochrome c, class I; KEGG: ajs:Ajs_0710 cytochrome c, class I; cytochrome c class I 823480 10481807 Alide2_0786 Alicycliphilus denitrificans K601 cytochrome c class I YP_004386718.1 822842 D 596154 CDS YP_004386719.1 330823416 10481808 823609..825807 1 NC_015422.1 PFAM: Cytochrome c biogenesis protein; KEGG: dia:Dtpsy_0691 ResB family protein; ResB family protein 825807 10481808 Alide2_0787 Alicycliphilus denitrificans K601 ResB family protein YP_004386719.1 823609 D 596154 CDS YP_004386720.1 330823417 10481809 825804..827138 1 NC_015422.1 KEGG: ajs:Ajs_0712 cytochrome c assembly protein; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein; cytochrome c-type biogenesis protein CcsB 827138 10481809 Alide2_0788 Alicycliphilus denitrificans K601 cytochrome c-type biogenesis protein CcsB YP_004386720.1 825804 D 596154 CDS YP_004386721.1 330823418 10481810 827312..828310 1 NC_015422.1 PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: dia:Dtpsy_0693 putative sulfite oxidase subunit YedY; oxidoreductase molybdopterin binding protein 828310 10481810 Alide2_0789 Alicycliphilus denitrificans K601 oxidoreductase molybdopterin binding protein YP_004386721.1 827312 D 596154 CDS YP_004386722.1 330823419 10481811 828310..828951 1 NC_015422.1 KEGG: dia:Dtpsy_0694 ferric reductase domain protein transmembrane component; HAMAP: Sulphoxide reductase heme-binding subunit YedZ; PFAM: Flavoprotein transmembrane component; sulfoxide reductase heme-binding subunit yedZ 828951 10481811 Alide2_0790 Alicycliphilus denitrificans K601 sulfoxide reductase heme-binding subunit yedZ YP_004386722.1 828310 D 596154 CDS YP_004386723.1 330823420 10481812 complement(829037..829840) 1 NC_015422.1 KEGG: dia:Dtpsy_0695 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 829840 10481812 Alide2_0791 Alicycliphilus denitrificans K601 beta-lactamase domain-containing protein YP_004386723.1 829037 R 596154 CDS YP_004386724.1 330823421 10481813 complement(829909..831198) 1 NC_015422.1 TIGRFAM: Diaminopimelate decarboxylase; KEGG: dia:Dtpsy_0696 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; diaminopimelate decarboxylase 831198 10481813 Alide2_0792 Alicycliphilus denitrificans K601 diaminopimelate decarboxylase YP_004386724.1 829909 R 596154 CDS YP_004386725.1 330823422 10481814 complement(831195..831407) 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_0717 hypothetical protein; hypothetical protein 831407 10481814 Alide2_0793 Alicycliphilus denitrificans K601 hypothetical protein YP_004386725.1 831195 R 596154 CDS YP_004386726.1 330823423 10481815 831420..831749 1 NC_015422.1 TIGRFAM: Frataxin-like; HAMAP: Frataxin-like; KEGG: ajs:Ajs_0728 frataxin family protein; PFAM: Frataxin-like; protein cyaY 831749 10481815 Alide2_0794 Alicycliphilus denitrificans K601 protein cyaY YP_004386726.1 831420 D 596154 CDS YP_004386727.1 330823424 10481816 complement(831756..834071) 1 NC_015422.1 KEGG: dia:Dtpsy_0698 penicillin-binding protein, 1A family; TIGRFAM: Penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; penicillin-binding protein 834071 10481816 Alide2_0795 Alicycliphilus denitrificans K601 penicillin-binding protein YP_004386727.1 831756 R 596154 CDS YP_004386728.1 330823425 10481817 834398..835468 1 NC_015422.1 TIGRFAM: Type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 835468 10481817 Alide2_0796 Alicycliphilus denitrificans K601 type IV pilus assembly protein PilM YP_004386728.1 834398 D 596154 CDS YP_004386729.1 330823426 10481818 835465..836076 1 NC_015422.1 PFAM: Fimbrial assembly; KEGG: ajs:Ajs_0731 fimbrial assembly family protein; fimbrial assembly family protein 836076 10481818 Alide2_0797 Alicycliphilus denitrificans K601 fimbrial assembly family protein YP_004386729.1 835465 D 596154 CDS YP_004386730.1 330823427 10481819 836073..836756 1 NC_015422.1 KEGG: ajs:Ajs_0732 pilus assembly protein, PilO; pilus assembly protein, PilO 836756 10481819 Alide2_0798 Alicycliphilus denitrificans K601 pilus assembly protein, PilO YP_004386730.1 836073 D 596154 CDS YP_004386731.1 330823428 10481820 836753..837310 1 NC_015422.1 PFAM: Pilus assembly protein PilP; KEGG: dia:Dtpsy_0702 pilus assembly protein PilP; Pilus assembly protein PilP 837310 10481820 Alide2_0799 Alicycliphilus denitrificans K601 Pilus assembly protein PilP YP_004386731.1 836753 D 596154 CDS YP_004386732.1 330823429 10481821 837307..839448 1 NC_015422.1 TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ; SMART: Secretin/TonB, short N-terminal; type IV pilus secretin PilQ 839448 10481821 Alide2_0800 Alicycliphilus denitrificans K601 type IV pilus secretin PilQ YP_004386732.1 837307 D 596154 CDS YP_004386733.1 330823430 10481822 839470..841017 1 NC_015422.1 PFAM: Putative Ig; KEGG: eba:ebA2288 hypothetical protein; Ig family protein 841017 10481822 Alide2_0801 Alicycliphilus denitrificans K601 Ig family protein YP_004386733.1 839470 D 596154 CDS YP_004386734.1 330823431 10481823 841141..842259 1 NC_015422.1 PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase AroB, subgroup; KEGG: dia:Dtpsy_0704 3-dehydroquinate synthase; 3-dehydroquinate synthase 842259 10481823 Alide2_0802 Alicycliphilus denitrificans K601 3-dehydroquinate synthase YP_004386734.1 841141 D 596154 CDS YP_004386735.1 330823432 10481824 842317..843489 1 NC_015422.1 SMART: Metal-dependent phosphohydrolase, HD domain; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: ajs:Ajs_0736 deoxyguanosinetriphosphate triphosphohydrolase-like protein; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase, type 2; PFAM: Metal-dependent phosphohydrolase, HD subdomain; deoxyguanosinetriphosphate triphosphohydrolase-like protein 843489 10481824 Alide2_0803 Alicycliphilus denitrificans K601 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_004386735.1 842317 D 596154 CDS YP_004386736.1 330823433 10481825 843521..844141 1 NC_015422.1 PFAM: Protein of unknown function DUF1415; KEGG: dia:Dtpsy_0706 protein of unknown function DUF1415; hypothetical protein 844141 10481825 Alide2_0804 Alicycliphilus denitrificans K601 hypothetical protein YP_004386736.1 843521 D 596154 CDS YP_004386737.1 330823434 10481826 844138..845010 1 NC_015422.1 KEGG: dia:Dtpsy_0707 hypothetical protein; hypothetical protein 845010 10481826 Alide2_0805 Alicycliphilus denitrificans K601 hypothetical protein YP_004386737.1 844138 D 596154 CDS YP_004386738.1 330823435 10481827 complement(845126..846631) 1 NC_015422.1 TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: xtr:100496453 methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like; PFAM: Aldehyde dehydrogenase domain; methylmalonate-semialdehyde dehydrogenase 846631 10481827 Alide2_0806 Alicycliphilus denitrificans K601 methylmalonate-semialdehyde dehydrogenase YP_004386738.1 845126 R 596154 CDS YP_004386739.1 330823436 10481828 complement(846646..847863) 1 NC_015422.1 KEGG: hse:Hsero_3068 branched-chain amino acid ABC transporter periplasmic protein; branched-chain amino acid ABC transporter substrate-binding protein 847863 10481828 Alide2_0807 Alicycliphilus denitrificans K601 branched-chain amino acid ABC transporter substrate-binding protein YP_004386739.1 846646 R 596154 CDS YP_004386740.1 330823437 10481830 848989..849699 1 NC_015422.1 PFAM: Transposase IS200-like; KEGG: vap:Vapar_1151 protein of unknown function DUF1568; transposase IS200 family protein 849699 10481830 Alide2_0809 Alicycliphilus denitrificans K601 transposase IS200 family protein YP_004386740.1 848989 D 596154 CDS YP_004386741.1 330823438 10481831 849869..854602 1 NC_015422.1 KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; glutamate synthase 854602 10481831 Alide2_0810 Alicycliphilus denitrificans K601 glutamate synthase YP_004386741.1 849869 D 596154 CDS YP_004386742.1 330823439 10481832 854643..856121 1 NC_015422.1 TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1; KEGG: dia:Dtpsy_0710 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; glutamate synthase NADH/NADPH small subunit 856121 10481832 Alide2_0811 Alicycliphilus denitrificans K601 glutamate synthase NADH/NADPH small subunit YP_004386742.1 854643 D 596154 CDS YP_004386743.1 330823440 10481833 856326..857123 1 NC_015422.1 KEGG: ajs:Ajs_0743 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 857123 10481833 Alide2_0812 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004386743.1 856326 D 596154 CDS YP_004386744.1 330823441 10481834 857185..857841 1 NC_015422.1 KEGG: ajs:Ajs_0744 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease 857841 10481834 Alide2_0813 Alicycliphilus denitrificans K601 polar amino acid ABC transporter permease YP_004386744.1 857185 D 596154 CDS YP_004386745.1 330823442 10481835 857822..858601 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0713 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 858601 10481835 Alide2_0814 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004386745.1 857822 D 596154 CDS YP_004386746.1 330823443 10481836 858625..859929 1 NC_015422.1 KEGG: vei:Veis_4017 hypothetical protein; hypothetical protein 859929 10481836 Alide2_0815 Alicycliphilus denitrificans K601 hypothetical protein YP_004386746.1 858625 D 596154 CDS YP_004386747.1 330823444 10481837 complement(860031..860990) 1 NC_015422.1 HAMAP: Spermine synthase; KEGG: ajs:Ajs_0746 spermidine synthase; PFAM: Spermine synthase; spermidine synthase 860990 10481837 Alide2_0816 Alicycliphilus denitrificans K601 spermidine synthase YP_004386747.1 860031 R 596154 CDS YP_004386748.1 330823445 10481838 complement(860990..861400) 1 NC_015422.1 KEGG: dia:Dtpsy_0715 S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; S-adenosylmethionine decarboxylase 861400 10481838 Alide2_0817 Alicycliphilus denitrificans K601 S-adenosylmethionine decarboxylase YP_004386748.1 860990 R 596154 CDS YP_004386749.1 330823446 10481839 861767..862615 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0716 ABC transporter related; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase 862615 10481839 Alide2_0818 Alicycliphilus denitrificans K601 sulfate-transporting ATPase YP_004386749.1 861767 D 596154 CDS YP_004386750.1 330823447 10481840 862612..863394 1 NC_015422.1 KEGG: dia:Dtpsy_0717 protein of unknown function DUF140; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140; hypothetical protein 863394 10481840 Alide2_0819 Alicycliphilus denitrificans K601 hypothetical protein YP_004386750.1 862612 D 596154 CDS YP_004386751.1 330823448 10481841 863429..863917 1 NC_015422.1 PFAM: Mammalian cell entry-related; KEGG: dia:Dtpsy_0718 mammalian cell entry related domain protein; mammalian cell entry domain-containing protein 863917 10481841 Alide2_0820 Alicycliphilus denitrificans K601 mammalian cell entry domain-containing protein YP_004386751.1 863429 D 596154 CDS YP_004386752.1 330823449 10481842 863914..864654 1 NC_015422.1 PFAM: VacJ-like lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein; VacJ family lipoprotein 864654 10481842 Alide2_0821 Alicycliphilus denitrificans K601 VacJ family lipoprotein YP_004386752.1 863914 D 596154 CDS YP_004386753.1 330823450 10481843 864772..865434 1 NC_015422.1 PFAM: Toluene tolerance Ttg2; KEGG: dia:Dtpsy_0720 toluene tolerance family protein; toluene tolerance family protein 865434 10481843 Alide2_0822 Alicycliphilus denitrificans K601 toluene tolerance family protein YP_004386753.1 864772 D 596154 CDS YP_004386754.1 330823451 10481844 865452..865724 1 NC_015422.1 KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS 865724 10481844 Alide2_0823 Alicycliphilus denitrificans K601 sulfate transporter/antisigma-factor antagonist STAS YP_004386754.1 865452 D 596154 CDS YP_004386755.1 330823452 10481845 865788..867083 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-4; KEGG: gpb:HDN1F_11000 hypothetical protein; SMART: Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC sensor-containing diguanylate cyclase 867083 10481845 Alide2_0824 Alicycliphilus denitrificans K601 PAS/PAC sensor-containing diguanylate cyclase YP_004386755.1 865788 D 596154 CDS YP_004386756.1 330823453 10481846 867165..868085 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0722 ABC transporter related; SMART: ATPase, AAA+ type, core; polyamine-transporting ATPase 868085 10481846 Alide2_0825 Alicycliphilus denitrificans K601 polyamine-transporting ATPase YP_004386756.1 867165 D 596154 CDS YP_004386757.1 330823454 10481847 868082..868837 1 NC_015422.1 PFAM: ABC-2 type transporter; KEGG: aav:Aave_1020 ABC-2 type transporter; ABC transporter 868837 10481847 Alide2_0826 Alicycliphilus denitrificans K601 ABC transporter YP_004386757.1 868082 D 596154 CDS YP_004386758.1 330823455 10481848 868851..869099 1 NC_015422.1 PFAM: BolA protein; KEGG: dia:Dtpsy_0724 BolA family protein; BolA family protein 869099 10481848 Alide2_0827 Alicycliphilus denitrificans K601 BolA family protein YP_004386758.1 868851 D 596154 CDS YP_004386759.1 330823456 10481849 869124..870398 1 NC_015422.1 PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: ctt:CtCNB1_0710 UDP-N-acetylglucosamine; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 870398 10481849 Alide2_0828 Alicycliphilus denitrificans K601 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004386759.1 869124 D 596154 CDS YP_004386760.1 330823457 10481850 870395..871045 1 NC_015422.1 TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; KEGG: dia:Dtpsy_0726 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase, catalytic domain; ATP phosphoribosyltransferase 871045 10481850 Alide2_0829 Alicycliphilus denitrificans K601 ATP phosphoribosyltransferase YP_004386760.1 870395 D 596154 CDS YP_004386761.1 330823458 10481851 871050..872366 1 NC_015422.1 TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; KEGG: aav:Aave_1024 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; histidinol dehydrogenase 872366 10481851 Alide2_0830 Alicycliphilus denitrificans K601 histidinol dehydrogenase YP_004386761.1 871050 D 596154 CDS YP_004386762.1 330823459 10481853 873231..874349 1 NC_015422.1 PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: dia:Dtpsy_0729 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 874349 10481853 Alide2_0833 Alicycliphilus denitrificans K601 histidinol-phosphate aminotransferase YP_004386762.1 873231 D 596154 CDS YP_004386763.1 330823460 10481854 874346..874978 1 NC_015422.1 KEGG: dia:Dtpsy_0730 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 874978 10481854 Alide2_0834 Alicycliphilus denitrificans K601 imidazoleglycerol-phosphate dehydratase YP_004386763.1 874346 D 596154 CDS YP_004386764.1 330823461 10481855 875029..875697 1 NC_015422.1 KEGG: dia:Dtpsy_0731 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I, C-terminal; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 875697 10481855 Alide2_0835 Alicycliphilus denitrificans K601 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_004386764.1 875029 D 596154 CDS YP_004386765.1 330823462 10481856 875750..876493 1 NC_015422.1 TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; KEGG: ajs:Ajs_0765 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 876493 10481856 Alide2_0836 Alicycliphilus denitrificans K601 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_004386765.1 875750 D 596154 CDS YP_004386766.1 330823463 10481857 complement(876500..877696) 1 NC_015422.1 PFAM: Spherulation-specific family 4; KEGG: ajs:Ajs_0766 hypothetical protein; Spherulation-specific family 4 877696 10481857 Alide2_0837 Alicycliphilus denitrificans K601 Spherulation-specific family 4 YP_004386766.1 876500 R 596154 CDS YP_004386767.1 330823464 10481858 complement(877764..879137) 1 NC_015422.1 KEGG: ajs:Ajs_0767 putative transmembrane protein; transmembrane protein 879137 10481858 Alide2_0838 Alicycliphilus denitrificans K601 transmembrane protein YP_004386767.1 877764 R 596154 CDS YP_004386768.1 330823465 10481859 complement(879137..880669) 1 NC_015422.1 PFAM: Glycosyl transferase, group 1; KEGG: ajs:Ajs_0768 glycosyl transferase, group 1; group 1 glycosyl transferase 880669 10481859 Alide2_0839 Alicycliphilus denitrificans K601 group 1 glycosyl transferase YP_004386768.1 879137 R 596154 CDS YP_004386769.1 330823466 10481860 complement(880666..881667) 1 NC_015422.1 KEGG: ajs:Ajs_0769 putative transmembrane protein; transmembrane protein 881667 10481860 Alide2_0840 Alicycliphilus denitrificans K601 transmembrane protein YP_004386769.1 880666 R 596154 CDS YP_004386770.1 330823467 10481861 complement(881660..883054) 1 NC_015422.1 KEGG: ajs:Ajs_0770 putative transmembrane protein; transmembrane protein 883054 10481861 Alide2_0841 Alicycliphilus denitrificans K601 transmembrane protein YP_004386770.1 881660 R 596154 CDS YP_004386771.1 330823468 10481862 complement(883062..883616) 1 NC_015422.1 KEGG: ajs:Ajs_0771 putative lipoprotein; hypothetical protein 883616 10481862 Alide2_0842 Alicycliphilus denitrificans K601 hypothetical protein YP_004386771.1 883062 R 596154 CDS YP_004386772.1 330823469 10481863 complement(883638..887441) 1 NC_015422.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0772 TPR repeat-containing protein; hypothetical protein 887441 10481863 Alide2_0843 Alicycliphilus denitrificans K601 hypothetical protein YP_004386772.1 883638 R 596154 CDS YP_004386773.1 330823470 10481864 complement(887488..890319) 1 NC_015422.1 PFAM: TM1410 hypothetical-related protein; KEGG: ajs:Ajs_0773 polysaccharide deacetylase; hypothetical protein 890319 10481864 Alide2_0844 Alicycliphilus denitrificans K601 hypothetical protein YP_004386773.1 887488 R 596154 CDS YP_004386774.1 330823471 10481865 890492..891508 1 NC_015422.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: ajs:Ajs_0774 UDP-galactose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase 891508 10481865 Alide2_0845 Alicycliphilus denitrificans K601 UDP-glucose 4-epimerase YP_004386774.1 890492 D 596154 CDS YP_004386775.1 330823472 10481866 891549..892328 1 NC_015422.1 TIGRFAM: Histidine biosynthesis, HisF; KEGG: dia:Dtpsy_0738 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis; Imidazole glycerol phosphate synthase cyclase subunit 892328 10481866 Alide2_0846 Alicycliphilus denitrificans K601 Imidazole glycerol phosphate synthase cyclase subunit YP_004386775.1 891549 D 596154 CDS YP_004386776.1 330823473 10481867 892435..892824 1 NC_015422.1 KEGG: aav:Aave_1048 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 892824 10481867 Alide2_0847 Alicycliphilus denitrificans K601 phosphoribosyl-AMP cyclohydrolase YP_004386776.1 892435 D 596154 CDS YP_004386777.1 330823474 10481868 892829..893206 1 NC_015422.1 KEGG: dia:Dtpsy_0740 phosphoribosyl-ATP pyrophosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; phosphoribosyl-ATP diphosphatase 893206 10481868 Alide2_0848 Alicycliphilus denitrificans K601 phosphoribosyl-ATP diphosphatase YP_004386777.1 892829 D 596154 CDS YP_004386778.1 330823475 10481869 893203..893589 1 NC_015422.1 KEGG: dia:Dtpsy_0741 putative transmembrane protein; transmembrane protein 893589 10481869 Alide2_0849 Alicycliphilus denitrificans K601 transmembrane protein YP_004386778.1 893203 D 596154 CDS YP_004386779.1 330823476 10481870 893582..894610 1 NC_015422.1 PFAM: Patatin/Phospholipase A2-related; KEGG: ajs:Ajs_0779 patatin; patatin 894610 10481870 Alide2_0850 Alicycliphilus denitrificans K601 patatin YP_004386779.1 893582 D 596154 CDS YP_004386780.1 330823477 10481871 894649..895005 1 NC_015422.1 KEGG: dia:Dtpsy_0743 histidine triad (HIT) protein; histidine triad (HIT) protein 895005 10481871 Alide2_0851 Alicycliphilus denitrificans K601 histidine triad (HIT) protein YP_004386780.1 894649 D 596154 CDS YP_004386781.1 330823478 10481872 895106..895354 1 NC_015422.1 KEGG: ajs:Ajs_0781 twin arginine translocase protein A; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; twin-arginine translocation protein, TatA/E family subunit 895354 10481872 Alide2_0852 Alicycliphilus denitrificans K601 twin-arginine translocation protein, TatA/E family subunit YP_004386781.1 895106 D 596154 CDS YP_004386782.1 330823479 10481873 895380..895859 1 NC_015422.1 KEGG: dia:Dtpsy_0745 sec-independent translocase; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; twin-arginine translocation protein subunit TatB 895859 10481873 Alide2_0853 Alicycliphilus denitrificans K601 twin-arginine translocation protein subunit TatB YP_004386782.1 895380 D 596154 CDS YP_004386783.1 330823480 10481874 895925..896713 1 NC_015422.1 KEGG: dia:Dtpsy_0746 sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 896713 10481874 Alide2_0854 Alicycliphilus denitrificans K601 Sec-independent protein translocase subunit TatC YP_004386783.1 895925 D 596154 CDS YP_004386784.1 330823481 10481875 complement(896787..897926) 1 NC_015422.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; HtrA2 peptidase 897926 10481875 Alide2_0855 Alicycliphilus denitrificans K601 HtrA2 peptidase YP_004386784.1 896787 R 596154 CDS YP_004386785.1 330823482 10481876 898017..898769 1 NC_015422.1 KEGG: dia:Dtpsy_0749 protein of unknown function DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3; NGG1p interacting factor 3 protein, NIF3 898769 10481876 Alide2_0856 Alicycliphilus denitrificans K601 NGG1p interacting factor 3 protein, NIF3 YP_004386785.1 898017 D 596154 CDS YP_004386786.1 330823483 10481877 898832..899884 1 NC_015422.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 899884 10481877 Alide2_0857 Alicycliphilus denitrificans K601 4-hydroxythreonine-4-phosphate dehydrogenase YP_004386786.1 898832 D 596154 CDS YP_004386787.1 330823484 10481878 complement(899951..900379) 1 NC_015422.1 KEGG: dac:Daci_5504 large-conductance mechanosensitive channel; TIGRFAM: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein 900379 10481878 Alide2_0858 Alicycliphilus denitrificans K601 large conductance mechanosensitive channel protein YP_004386787.1 899951 R 596154 CDS YP_004386788.1 330823485 10481879 900505..901104 1 NC_015422.1 TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit 901104 10481879 Alide2_0859 Alicycliphilus denitrificans K601 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_004386788.1 900505 D 596154 CDS YP_004386789.1 330823486 10481880 901120..902541 1 NC_015422.1 PFAM: Cytochrome b/b6, C-terminal; Cytochrome b/b6, N-terminal; KEGG: dia:Dtpsy_0753 cytochrome b/b6 domain protein; cytochrome b/b6 domain-containing protein 902541 10481880 Alide2_0860 Alicycliphilus denitrificans K601 cytochrome b/b6 domain-containing protein YP_004386789.1 901120 D 596154 CDS YP_004386790.1 330823487 10481881 902558..903313 1 NC_015422.1 KEGG: ajs:Ajs_0791 cytochrome c1; manually curated; PFAM: Cytochrome c1; cytochrome c1 903313 10481881 Alide2_0861 Alicycliphilus denitrificans K601 cytochrome c1 YP_004386790.1 902558 D 596154 CDS YP_004386791.1 330823488 10481882 903412..904023 1 NC_015422.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_0755 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein 904023 10481882 Alide2_0862 Alicycliphilus denitrificans K601 glutathione S-transferase domain-containing protein YP_004386791.1 903412 D 596154 CDS YP_004386792.1 330823489 10481883 904056..904580 1 NC_015422.1 PFAM: Stringent starvation protein B; KEGG: dia:Dtpsy_0756 stringent starvation protein B; stringent starvation protein B 904580 10481883 Alide2_0863 Alicycliphilus denitrificans K601 stringent starvation protein B YP_004386792.1 904056 D 596154 CDS YP_004386793.1 330823490 10481885 complement(904763..905062) 1 NC_015422.1 KEGG: dia:Dtpsy_0757 hypothetical protein; hypothetical protein 905062 10481885 Alide2_0864 Alicycliphilus denitrificans K601 hypothetical protein YP_004386793.1 904763 R 596154 CDS YP_004386794.1 330823491 10481886 905304..908063 1 NC_015422.1 SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; TIGRFAM: SecA protein; KEGG: dia:Dtpsy_0759 preprotein translocase subunit SecA; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SEC-C motif; protein translocase subunit secA 908063 10481886 Alide2_0865 Alicycliphilus denitrificans K601 protein translocase subunit secA YP_004386794.1 905304 D 596154 CDS YP_004386795.1 330823492 10481887 908139..909368 1 NC_015422.1 PFAM: Arginine biosynthesis protein ArgJ; TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: ajs:Ajs_0797 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 909368 10481887 Alide2_0866 Alicycliphilus denitrificans K601 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_004386795.1 908139 D 596154 CDS YP_004386796.1 330823493 10481888 909423..910295 1 NC_015422.1 KEGG: dia:Dtpsy_0761 protein of unknown function DUF815; PFAM: Domain of unknown function DUF815; SMART: ATPase, AAA+ type, core; hypothetical protein 910295 10481888 Alide2_0867 Alicycliphilus denitrificans K601 hypothetical protein YP_004386796.1 909423 D 596154 CDS YP_004386797.1 330823494 10481889 910292..910717 1 NC_015422.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0762 NUDIX hydrolase; NUDIX hydrolase 910717 10481889 Alide2_0868 Alicycliphilus denitrificans K601 NUDIX hydrolase YP_004386797.1 910292 D 596154 CDS YP_004386798.1 330823495 10481890 complement(910780..910986) 1 NC_015422.1 PFAM: Uncharacterised protein family, zinc-binding; KEGG: dia:Dtpsy_0763 protein of unknown function DUF329; hypothetical protein 910986 10481890 Alide2_0869 Alicycliphilus denitrificans K601 hypothetical protein YP_004386798.1 910780 R 596154 CDS YP_004386799.1 330823496 10481891 complement(910988..911743) 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0289; KEGG: dia:Dtpsy_0764 hypothetical protein; hypothetical protein 911743 10481891 Alide2_0870 Alicycliphilus denitrificans K601 hypothetical protein YP_004386799.1 910988 R 596154 CDS YP_004386800.1 330823497 10481892 complement(911826..912440) 1 NC_015422.1 TIGRFAM: Dephospho-CoA kinase; KEGG: ajs:Ajs_0802 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 912440 10481892 Alide2_0871 Alicycliphilus denitrificans K601 dephospho-CoA kinase YP_004386800.1 911826 R 596154 CDS YP_004386801.1 330823498 10481893 complement(912461..913339) 1 NC_015422.1 KEGG: dia:Dtpsy_0766 prepilin peptidase; PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV; prepilin peptidase 913339 10481893 Alide2_0872 Alicycliphilus denitrificans K601 prepilin peptidase YP_004386801.1 912461 R 596154 CDS YP_004386802.1 330823499 10481894 complement(913339..914556) 1 NC_015422.1 PFAM: Type II secretion system F domain; KEGG: ajs:Ajs_0804 type II secretion system protein; type II secretion system F domain-containing protein 914556 10481894 Alide2_0873 Alicycliphilus denitrificans K601 type II secretion system F domain-containing protein YP_004386802.1 913339 R 596154 CDS YP_004386803.1 330823500 10481895 complement(914578..916317) 1 NC_015422.1 TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: ajs:Ajs_0805 type IV-A pilus assembly ATPase PilB; SMART: ATPase, AAA+ type, core; type IV-A pilus assembly ATPase PilB 916317 10481895 Alide2_0874 Alicycliphilus denitrificans K601 type IV-A pilus assembly ATPase PilB YP_004386803.1 914578 R 596154 CDS YP_004386804.1 330823501 10481896 916693..917784 1 NC_015422.1 KEGG: ajs:Ajs_0807 phage integrase family protein; manually curated; PFAM: Integrase, catalytic core, phage; integrase family protein 917784 10481896 Alide2_0875 Alicycliphilus denitrificans K601 integrase family protein YP_004386804.1 916693 D 596154 CDS YP_004386805.1 330823502 10481897 918106..918597 1 NC_015422.1 KEGG: vap:Vapar_5848 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 918597 10481897 Alide2_0876 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004386805.1 918106 D 596154 CDS YP_004386806.1 330823503 10481898 918594..919250 1 NC_015422.1 PFAM: Protein of unknown function DUF1814; KEGG: vap:Vapar_5847 hypothetical protein; hypothetical protein 919250 10481898 Alide2_0877 Alicycliphilus denitrificans K601 hypothetical protein YP_004386806.1 918594 D 596154 CDS YP_004386807.1 330823504 10481899 919394..920080 1 NC_015422.1 KEGG: tbd:Tbd_1344 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 920080 10481899 Alide2_0878 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004386807.1 919394 D 596154 CDS YP_004386808.1 330823505 10481900 920077..920622 1 NC_015422.1 KEGG: pol:Bpro_0676 hypothetical protein; hypothetical protein 920622 10481900 Alide2_0879 Alicycliphilus denitrificans K601 hypothetical protein YP_004386808.1 920077 D 596154 CDS YP_004386809.1 330823506 10481902 complement(921406..922209) 1 NC_015422.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 922209 10481902 Alide2_0881 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004386809.1 921406 R 596154 CDS YP_004386810.1 330823507 10481903 complement(922199..923725) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit 923725 10481903 Alide2_0882 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004386810.1 922199 R 596154 CDS YP_004386811.1 330823508 10481904 complement(923884..924774) 1 NC_015422.1 KEGG: dac:Daci_4208 hypothetical protein; hypothetical protein 924774 10481904 Alide2_0883 Alicycliphilus denitrificans K601 hypothetical protein YP_004386811.1 923884 R 596154 CDS YP_004386812.1 330823509 10481905 complement(924906..926075) 1 NC_015422.1 KEGG: ajs:Ajs_3614 phage integrase family protein; phage integrase family protein 926075 10481905 Alide2_0884 Alicycliphilus denitrificans K601 phage integrase family protein YP_004386812.1 924906 R 596154 CDS YP_004386813.1 330823510 10481907 complement(926605..927519) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 927519 10481907 Alide2_0886 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004386813.1 926605 R 596154 CDS YP_004386814.1 330823511 10481908 complement(927516..927839) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 927839 10481908 Alide2_0887 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004386814.1 927516 R 596154 CDS YP_004386815.1 330823512 10481910 complement(928139..929188) 1 NC_015422.1 KEGG: ajs:Ajs_0840 dimethylallyltranstransferase; PFAM: Polyprenyl synthetase; trans-hexaprenyltranstransferase 929188 10481910 Alide2_0888 Alicycliphilus denitrificans K601 trans-hexaprenyltranstransferase YP_004386815.1 928139 R 596154 CDS YP_004386816.1 330823513 10481911 929295..929606 1 NC_015422.1 TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: ajs:Ajs_0841 50S ribosomal protein L21; PFAM: Ribosomal protein L21; 50S ribosomal protein L21 929606 10481911 Alide2_0889 Alicycliphilus denitrificans K601 50S ribosomal protein L21 YP_004386816.1 929295 D 596154 CDS YP_004386817.1 330823514 10481912 929622..929879 1 NC_015422.1 TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: dia:Dtpsy_0771 50S ribosomal protein L27; PFAM: Ribosomal protein L27; 50S ribosomal protein L27 929879 10481912 Alide2_0890 Alicycliphilus denitrificans K601 50S ribosomal protein L27 YP_004386817.1 929622 D 596154 CDS YP_004386818.1 330823515 10481913 930005..931078 1 NC_015422.1 TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTP-binding protein Obg/CgtA; KEGG: ajs:Ajs_0843 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; GTPase ObgE 931078 10481913 Alide2_0891 Alicycliphilus denitrificans K601 GTPase ObgE YP_004386818.1 930005 D 596154 CDS YP_004386819.1 330823516 10481914 931143..932282 1 NC_015422.1 TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; KEGG: dia:Dtpsy_0773 gamma-glutamyl kinase; SMART: Pseudouridine synthase/archaeosine transglycosylase; glutamate 5-kinase 932282 10481914 Alide2_0892 Alicycliphilus denitrificans K601 glutamate 5-kinase YP_004386819.1 931143 D 596154 CDS YP_004386820.1 330823517 10481915 complement(932306..932980) 1 NC_015422.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0774 dinucleoside polyphosphate hydrolase; NUDIX hydrolase 932980 10481915 Alide2_0893 Alicycliphilus denitrificans K601 NUDIX hydrolase YP_004386820.1 932306 R 596154 CDS YP_004386821.1 330823518 10481916 933082..934827 1 NC_015422.1 TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase, class IIa, bacterial; KEGG: dia:Dtpsy_0775 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding; prolyl-tRNA synthetase 934827 10481916 Alide2_0894 Alicycliphilus denitrificans K601 prolyl-tRNA synthetase YP_004386821.1 933082 D 596154 CDS YP_004386822.1 330823519 10481917 934824..935468 1 NC_015422.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_0847 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 935468 10481917 Alide2_0895 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004386822.1 934824 D 596154 CDS YP_004386823.1 330823520 10481918 complement(935444..936778) 1 NC_015422.1 PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: dia:Dtpsy_0777 protein of unknown function DUF21; hypothetical protein 936778 10481918 Alide2_0896 Alicycliphilus denitrificans K601 hypothetical protein YP_004386823.1 935444 R 596154 CDS YP_004386824.1 330823521 10481919 complement(936822..937829) 1 NC_015422.1 KEGG: aav:Aave_3667 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase 937829 10481919 Alide2_0897 Alicycliphilus denitrificans K601 AAA ATPase YP_004386824.1 936822 R 596154 CDS YP_004386825.1 330823522 10481920 complement(937970..938302) 1 NC_015422.1 KEGG: dia:Dtpsy_0778 glutaredoxin-like protein; TIGRFAM: Monothiol glutaredoxin-related; PFAM: Glutaredoxin; glutaredoxin-like protein 938302 10481920 Alide2_0898 Alicycliphilus denitrificans K601 glutaredoxin-like protein YP_004386825.1 937970 R 596154 CDS YP_004386826.1 330823523 10481921 complement(938359..939204) 1 NC_015422.1 TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; KEGG: ajs:Ajs_0850 HemK family modification methylase; PFAM: Methyltransferase small; protein-(glutamine-N5) methyltransferase 939204 10481921 Alide2_0899 Alicycliphilus denitrificans K601 protein-(glutamine-N5) methyltransferase YP_004386826.1 938359 R 596154 CDS YP_004386827.1 330823524 10481922 complement(939248..940363) 1 NC_015422.1 SMART: Peptide chain release factor; TIGRFAM: Peptide chain release factor 1; KEGG: ajs:Ajs_0851 peptide chain release factor 1; HAMAP: Peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor; peptide chain release factor 1 940363 10481922 Alide2_0900 Alicycliphilus denitrificans K601 peptide chain release factor 1 YP_004386827.1 939248 R 596154 CDS YP_004386828.1 330823525 10481923 complement(940432..941745) 1 NC_015422.1 KEGG: dia:Dtpsy_0781 glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; glutamyl-tRNA reductase 941745 10481923 Alide2_0901 Alicycliphilus denitrificans K601 glutamyl-tRNA reductase YP_004386828.1 940432 R 596154 CDS YP_004386829.1 330823526 10481924 941820..942095 1 NC_015422.1 KEGG: dia:Dtpsy_0782 hypothetical protein; hypothetical protein 942095 10481924 Alide2_0902 Alicycliphilus denitrificans K601 hypothetical protein YP_004386829.1 941820 D 596154 CDS YP_004386830.1 330823527 10481925 complement(942212..943105) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0783 transcriptional regulator, LysR family; LysR family transcriptional regulator 943105 10481925 Alide2_0903 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386830.1 942212 R 596154 CDS YP_004386831.1 330823528 10481926 943231..944214 1 NC_015422.1 KEGG: ajs:Ajs_0855 hypothetical protein; hypothetical protein 944214 10481926 Alide2_0904 Alicycliphilus denitrificans K601 hypothetical protein YP_004386831.1 943231 D 596154 CDS YP_004386832.1 330823529 10481927 944214..945116 1 NC_015422.1 PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 945116 10481927 Alide2_0905 Alicycliphilus denitrificans K601 N-formylglutamate amidohydrolase YP_004386832.1 944214 D 596154 CDS YP_004386833.1 330823530 10481928 complement(945160..947592) 1 NC_015422.1 PFAM: Mechanosensitive ion channel MscS; Protein of unknown function DUF3772; KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 947592 10481928 Alide2_0906 Alicycliphilus denitrificans K601 mechanosensitive ion channel protein MscS YP_004386833.1 945160 R 596154 CDS YP_004386834.1 330823531 10481929 complement(947621..948370) 1 NC_015422.1 KEGG: dia:Dtpsy_0787 glycerophosphodiester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 948370 10481929 Alide2_0907 Alicycliphilus denitrificans K601 glycerophosphodiester phosphodiesterase YP_004386834.1 947621 R 596154 CDS YP_004386835.1 330823532 10481930 complement(948377..949384) 1 NC_015422.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: ctt:CtCNB1_0786 sn-glycerol-3-phosphate transport ATP-binding protein; SMART: ATPase, AAA+ type, core; glycerol-3-phosphate-transporting ATPase 949384 10481930 Alide2_0908 Alicycliphilus denitrificans K601 glycerol-3-phosphate-transporting ATPase YP_004386835.1 948377 R 596154 CDS YP_004386836.1 330823533 10481931 complement(949445..950293) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0789 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 950293 10481931 Alide2_0909 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386836.1 949445 R 596154 CDS YP_004386837.1 330823534 10481932 complement(950301..951182) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ctt:CtCNB1_0788 sn-glycerol-3-phosphate transport systempermease protein UgpA; ABC transporter permease 951182 10481932 Alide2_0910 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386837.1 950301 R 596154 CDS YP_004386838.1 330823535 10481933 complement(951253..952566) 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dia:Dtpsy_0791 extracellular solute-binding protein family 1; family 1 extracellular solute-binding protein 952566 10481933 Alide2_0911 Alicycliphilus denitrificans K601 family 1 extracellular solute-binding protein YP_004386838.1 951253 R 596154 CDS YP_004386839.1 330823536 10481934 952898..954127 1 NC_015422.1 KEGG: ajs:Ajs_0863 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; Amino acid-binding ACT; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase 954127 10481934 Alide2_0912 Alicycliphilus denitrificans K601 phosphoglycerate dehydrogenase YP_004386839.1 952898 D 596154 CDS YP_004386840.1 330823537 10481935 954249..958166 1 NC_015422.1 PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich domain; KEGG: dia:Dtpsy_0793 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 958166 10481935 Alide2_0913 Alicycliphilus denitrificans K601 FAD linked oxidase domain-containing protein YP_004386840.1 954249 D 596154 CDS YP_004386841.1 330823538 10481936 958163..958615 1 NC_015422.1 PFAM: Histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein; histidine triad (HIT) protein 958615 10481936 Alide2_0914 Alicycliphilus denitrificans K601 histidine triad (HIT) protein YP_004386841.1 958163 D 596154 CDS YP_004386842.1 330823539 10481937 958692..959111 1 NC_015422.1 PFAM: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal; KEGG: dia:Dtpsy_0795 protein of unknown function DUF971; hypothetical protein 959111 10481937 Alide2_0915 Alicycliphilus denitrificans K601 hypothetical protein YP_004386842.1 958692 D 596154 CDS YP_004386843.1 330823540 10481938 959189..959920 1 NC_015422.1 KEGG: dia:Dtpsy_0796 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: UbiE/COQ5 methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 959920 10481938 Alide2_0916 Alicycliphilus denitrificans K601 ubiquinone/menaquinone biosynthesis methyltransferase YP_004386843.1 959189 D 596154 CDS YP_004386844.1 330823541 10481939 959962..960960 1 NC_015422.1 KEGG: dia:Dtpsy_0797 import inner membrane translocase subunit Tim44; PFAM: Membrane transporter, Tim44-related/Ribosomal protein L45; SMART: Membrane transporter, Tim44-related/Ribosomal protein L45; import inner membrane translocase subunit Tim44 960960 10481939 Alide2_0917 Alicycliphilus denitrificans K601 import inner membrane translocase subunit Tim44 YP_004386844.1 959962 D 596154 CDS YP_004386845.1 330823542 10481940 961035..961595 1 NC_015422.1 KEGG: dia:Dtpsy_0798 hypothetical protein; hypothetical protein 961595 10481940 Alide2_0918 Alicycliphilus denitrificans K601 hypothetical protein YP_004386845.1 961035 D 596154 CDS YP_004386846.1 330823543 10481941 961592..963157 1 NC_015422.1 KEGG: dia:Dtpsy_0799 putative ubiquinone biosynthesis protein UbiB; TIGRFAM: Probable ubiquinone biosynthesis protein UbiB; PFAM: ABC-1; 2-polyprenylphenol 6-hydroxylase 963157 10481941 Alide2_0919 Alicycliphilus denitrificans K601 2-polyprenylphenol 6-hydroxylase YP_004386846.1 961592 D 596154 CDS YP_004386847.1 330823544 10481942 963209..964660 1 NC_015422.1 PFAM: Sodium/solute symporter; KEGG: dia:Dtpsy_0800 Na+/solute symporter; Na+/solute symporter 964660 10481942 Alide2_0920 Alicycliphilus denitrificans K601 Na+/solute symporter YP_004386847.1 963209 D 596154 CDS YP_004386848.1 330823545 10481943 964723..965004 1 NC_015422.1 SMART: Regulatory protein, FmdB, putative; manually curated; TIGRFAM: Regulatory protein, FmdB, putative; KEGG: dia:Dtpsy_0801 regulatory protein, FmdB family; PFAM: Regulatory protein, FmdB, putative; FmdB family regulatory protein 965004 10481943 Alide2_0921 Alicycliphilus denitrificans K601 FmdB family regulatory protein YP_004386848.1 964723 D 596154 CDS YP_004386849.1 330823546 10481944 965018..965641 1 NC_015422.1 PFAM: Protein of unknown function DUF502; KEGG: dia:Dtpsy_0802 protein of unknown function DUF502; hypothetical protein 965641 10481944 Alide2_0922 Alicycliphilus denitrificans K601 hypothetical protein YP_004386849.1 965018 D 596154 CDS YP_004386850.1 330823547 10481945 965742..967541 1 NC_015422.1 TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: dia:Dtpsy_0803 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; aspartyl-tRNA synthetase 967541 10481945 Alide2_0923 Alicycliphilus denitrificans K601 aspartyl-tRNA synthetase YP_004386850.1 965742 D 596154 CDS YP_004386851.1 330823548 10481946 967603..968049 1 NC_015422.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0805 NUDIX hydrolase; NUDIX hydrolase 968049 10481946 Alide2_0924 Alicycliphilus denitrificans K601 NUDIX hydrolase YP_004386851.1 967603 D 596154 CDS YP_004386852.1 330823549 10481947 968052..968813 1 NC_015422.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dia:Dtpsy_0806 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 968813 10481947 Alide2_0925 Alicycliphilus denitrificans K601 endonuclease/exonuclease/phosphatase YP_004386852.1 968052 D 596154 CDS YP_004386853.1 330823550 10481948 968956..970185 1 NC_015422.1 KEGG: dia:Dtpsy_0807 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 970185 10481948 Alide2_0926 Alicycliphilus denitrificans K601 phospholipase D/transphosphatidylase YP_004386853.1 968956 D 596154 CDS YP_004386854.1 330823551 10481949 970290..971015 1 NC_015422.1 KEGG: dia:Dtpsy_0808 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; GTP cyclohydrolase I 971015 10481949 Alide2_0927 Alicycliphilus denitrificans K601 GTP cyclohydrolase I YP_004386854.1 970290 D 596154 CDS YP_004386855.1 330823552 10481950 971017..971439 1 NC_015422.1 PFAM: BLUF; KEGG: dia:Dtpsy_0809 BLUF domain protein; BLUF domain-containing protein 971439 10481950 Alide2_0928 Alicycliphilus denitrificans K601 BLUF domain-containing protein YP_004386855.1 971017 D 596154 CDS YP_004386856.1 330823553 10481951 971661..972542 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_0810 protein of unknown function DUF6 transmembrane; hypothetical protein 972542 10481951 Alide2_0929 Alicycliphilus denitrificans K601 hypothetical protein YP_004386856.1 971661 D 596154 CDS YP_004386857.1 330823554 10481952 972572..974392 1 NC_015422.1 KEGG: dar:Daro_2490 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; histidine kinase 974392 10481952 Alide2_0930 Alicycliphilus denitrificans K601 histidine kinase YP_004386857.1 972572 D 596154 CDS YP_004386858.1 330823555 10481953 974389..975018 1 NC_015422.1 KEGG: dar:Daro_2491 LuxR response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator 975018 10481953 Alide2_0931 Alicycliphilus denitrificans K601 two component LuxR family transcriptional regulator YP_004386858.1 974389 D 596154 CDS YP_004386859.1 330823556 10481954 complement(975127..976164) 1 NC_015422.1 PFAM: Cytochrome c, class I; KEGG: azo:azo2669 cytochrome c family protein; cytochrome c class I 976164 10481954 Alide2_0932 Alicycliphilus denitrificans K601 cytochrome c class I YP_004386859.1 975127 R 596154 CDS YP_004386860.1 330823557 10481955 976300..977157 1 NC_015422.1 KEGG: aav:Aave_3628 hypothetical protein; hypothetical protein 977157 10481955 Alide2_0933 Alicycliphilus denitrificans K601 hypothetical protein YP_004386860.1 976300 D 596154 CDS YP_004386861.1 330823558 10481956 complement(977309..977920) 1 NC_015422.1 KEGG: dia:Dtpsy_0813 hypothetical protein; hypothetical protein 977920 10481956 Alide2_0934 Alicycliphilus denitrificans K601 hypothetical protein YP_004386861.1 977309 R 596154 CDS YP_004386862.1 330823559 10481957 978020..978676 1 NC_015422.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0885 lysine exporter protein LysE/YggA; lysine exporter protein LysE/YggA 978676 10481957 Alide2_0935 Alicycliphilus denitrificans K601 lysine exporter protein LysE/YggA YP_004386862.1 978020 D 596154 CDS YP_004386863.1 330823560 10481958 complement(978737..980143) 1 NC_015422.1 PFAM: Amidase; KEGG: dia:Dtpsy_0815 amidase; amidase 980143 10481958 Alide2_0936 Alicycliphilus denitrificans K601 amidase YP_004386863.1 978737 R 596154 CDS YP_004386864.1 330823561 10481959 complement(980140..981630) 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dia:Dtpsy_0816 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein 981630 10481959 Alide2_0937 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004386864.1 980140 R 596154 CDS YP_004386865.1 330823562 10481960 complement(981736..982602) 1 NC_015422.1 PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: dia:Dtpsy_0817 ABC transporter related; SMART: ATPase, AAA+ type, core; nickel-transporting ATPase 982602 10481960 Alide2_0938 Alicycliphilus denitrificans K601 nickel-transporting ATPase YP_004386865.1 981736 R 596154 CDS YP_004386866.1 330823563 10481961 complement(982599..983573) 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0818 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; peptide ABC transporter ATPase 983573 10481961 Alide2_0939 Alicycliphilus denitrificans K601 peptide ABC transporter ATPase YP_004386866.1 982599 R 596154 CDS YP_004386867.1 330823564 10481962 complement(983847..984710) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0819 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 984710 10481962 Alide2_0940 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386867.1 983847 R 596154 CDS YP_004386868.1 330823565 10481963 complement(984707..985669) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0820 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 985669 10481963 Alide2_0941 Alicycliphilus denitrificans K601 ABC transporter permease YP_004386868.1 984707 R 596154 CDS YP_004386869.1 330823566 10481964 985814..986071 1 NC_015422.1 KEGG: dia:Dtpsy_0821 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 986071 10481964 Alide2_0942 Alicycliphilus denitrificans K601 4Fe-4S ferredoxin YP_004386869.1 985814 D 596154 CDS YP_004386870.1 330823567 10481965 complement(986133..986762) 1 NC_015422.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: dia:Dtpsy_0822 peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 986762 10481965 Alide2_0943 Alicycliphilus denitrificans K601 peptidyl-tRNA hydrolase YP_004386870.1 986133 R 596154 CDS YP_004386871.1 330823568 10481966 complement(986872..987498) 1 NC_015422.1 KEGG: dia:Dtpsy_0823 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: Ribosomal protein L25, long-form; PFAM: Ribosomal protein L25, short-form; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 987498 10481966 Alide2_0944 Alicycliphilus denitrificans K601 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_004386871.1 986872 R 596154 CDS YP_004386872.1 330823569 10481967 complement(987600..988559) 1 NC_015422.1 TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: dia:Dtpsy_0824 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 988559 10481967 Alide2_0945 Alicycliphilus denitrificans K601 ribose-phosphate pyrophosphokinase YP_004386872.1 987600 R 596154 CDS YP_004386873.1 330823570 10481969 complement(988779..989645) 1 NC_015422.1 PFAM: GHMP kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: ajs:Ajs_0896 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 989645 10481969 Alide2_0946 Alicycliphilus denitrificans K601 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_004386873.1 988779 R 596154 CDS YP_004386874.1 330823571 10481970 complement(989650..990147) 1 NC_015422.1 PFAM: Outer membrane lipoprotein LolB; KEGG: dia:Dtpsy_0826 putative lipoprotein; outer membrane lipoprotein LolB 990147 10481970 Alide2_0947 Alicycliphilus denitrificans K601 outer membrane lipoprotein LolB YP_004386874.1 989650 R 596154 CDS YP_004386875.1 330823572 10481971 complement(990144..991925) 1 NC_015422.1 PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0898 TPR repeat-containing protein; hypothetical protein 991925 10481971 Alide2_0948 Alicycliphilus denitrificans K601 hypothetical protein YP_004386875.1 990144 R 596154 CDS YP_004386876.1 330823573 10481972 991955..992770 1 NC_015422.1 SMART: DNA glycosylase/AP lyase, catalytic domain; TIGRFAM: DNA glycosylase/AP lyase; KEGG: ajs:Ajs_0899 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase; formamidopyrimidine-DNA glycosylase 992770 10481972 Alide2_0949 Alicycliphilus denitrificans K601 formamidopyrimidine-DNA glycosylase YP_004386876.1 991955 D 596154 CDS YP_004386877.1 330823574 10481973 992840..994825 1 NC_015422.1 manually curated; KEGG: dia:Dtpsy_0829 hypothetical protein; hypothetical protein 994825 10481973 Alide2_0950 Alicycliphilus denitrificans K601 hypothetical protein YP_004386877.1 992840 D 596154 CDS YP_004386878.1 330823575 10481974 994822..995880 1 NC_015422.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: dia:Dtpsy_0830 A/G-specific adenine glycosylase; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; A/G-specific adenine glycosylase 995880 10481974 Alide2_0951 Alicycliphilus denitrificans K601 A/G-specific adenine glycosylase YP_004386878.1 994822 D 596154 CDS YP_004386879.1 330823576 10481975 complement(995994..996857) 1 NC_015422.1 HAMAP: ATPase, P-loop-containing; KEGG: dia:Dtpsy_0831 hypothetical protein; hypothetical protein 996857 10481975 Alide2_0952 Alicycliphilus denitrificans K601 hypothetical protein YP_004386879.1 995994 R 596154 CDS YP_004386880.1 330823577 10481976 complement(996863..998536) 1 NC_015422.1 KEGG: ajs:Ajs_0903 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC; DNA repair protein RecN 998536 10481976 Alide2_0953 Alicycliphilus denitrificans K601 DNA repair protein RecN YP_004386880.1 996863 R 596154 CDS YP_004386881.1 330823578 10481977 complement(998539..999435) 1 NC_015422.1 HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: dia:Dtpsy_0833 NAD(+)/NADH kinase family protein; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted; inorganic polyphosphate/ATP-NAD kinase 999435 10481977 Alide2_0954 Alicycliphilus denitrificans K601 inorganic polyphosphate/ATP-NAD kinase YP_004386881.1 998539 R 596154 CDS YP_004386882.1 330823579 10481978 999464..1000468 1 NC_015422.1 TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; HAMAP: Winged helix-turn-helix transcription repressor, HrcA; KEGG: dia:Dtpsy_0847 heat-inducible transcription repressor; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal; heat-inducible transcription repressor HrcA 1000468 10481978 Alide2_0955 Alicycliphilus denitrificans K601 heat-inducible transcription repressor HrcA YP_004386882.1 999464 D 596154 CDS YP_004386883.1 330823580 10481981 1000898..1001368 1 NC_015422.1 PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; KEGG: gur:Gura_3600 N-6 DNA methylase; Restriction endonuclease, type I, EcoRI, R subunit/type III 1001368 10481981 Alide2_0957 Alicycliphilus denitrificans K601 Restriction endonuclease, type I, EcoRI, R subunit/type III YP_004386883.1 1000898 D 596154 CDS YP_004386884.1 330823581 10481982 complement(1001365..1002279) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 1002279 10481982 Alide2_0958 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004386884.1 1001365 R 596154 CDS YP_004386885.1 330823582 10481983 complement(1002276..1002599) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1002599 10481983 Alide2_0959 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004386885.1 1002276 R 596154 CDS YP_004386886.1 330823583 10481984 complement(1002847..1004109) 1 NC_015422.1 KEGG: dac:Daci_2707 outer membrane efflux protein; outer membrane efflux protein 1004109 10481984 Alide2_0960 Alicycliphilus denitrificans K601 outer membrane efflux protein YP_004386886.1 1002847 R 596154 CDS YP_004386887.1 330823584 10481985 complement(1004106..1004447) 1 NC_015422.1 PFAM: Protein of unknown function DUF3240; KEGG: dac:Daci_2708 hypothetical protein; hypothetical protein 1004447 10481985 Alide2_0961 Alicycliphilus denitrificans K601 hypothetical protein YP_004386887.1 1004106 R 596154 CDS YP_004386888.1 330823585 10481987 complement(1006794..1007999) 1 NC_015422.1 PFAM: Transposase, IS4-like; KEGG: bvi:Bcep1808_6138 transposase, IS4 family protein; transposase IS4 family protein 1007999 10481987 Alide2_0963 Alicycliphilus denitrificans K601 transposase IS4 family protein YP_004386888.1 1006794 R 596154 CDS YP_004386889.1 330823586 10481988 complement(1009019..1010242) 1 NC_015422.1 KEGG: dac:Daci_2710 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 1010242 10481988 Alide2_0964 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004386889.1 1009019 R 596154 CDS YP_004386890.1 330823587 10481989 1010422..1010979 1 NC_015422.1 manually curated; KEGG: dac:Daci_2711 cytochrome b561; cytochrome b561 1010979 10481989 Alide2_0965 Alicycliphilus denitrificans K601 cytochrome b561 YP_004386890.1 1010422 D 596154 CDS YP_004386891.1 330823588 10481990 1011005..1011700 1 NC_015422.1 PFAM: Domain of unknown function DUF125, transmembrane; KEGG: dac:Daci_2712 hypothetical protein; hypothetical protein 1011700 10481990 Alide2_0966 Alicycliphilus denitrificans K601 hypothetical protein YP_004386891.1 1011005 D 596154 CDS YP_004386892.1 330823589 10481991 complement(1011703..1013100) 1 NC_015422.1 manually curated; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: dac:Daci_2713 histidine kinase; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; integral membrane sensor signal transduction histidine kinase 1013100 10481991 Alide2_0967 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004386892.1 1011703 R 596154 CDS YP_004386893.1 330823590 10481992 complement(1013104..1013769) 1 NC_015422.1 KEGG: dac:Daci_2714 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 1013769 10481992 Alide2_0968 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004386893.1 1013104 R 596154 CDS YP_004386894.1 330823591 10481993 1013927..1014085 1 NC_015422.1 hypothetical protein 1014085 10481993 Alide2_0969 Alicycliphilus denitrificans K601 hypothetical protein YP_004386894.1 1013927 D 596154 CDS YP_004386895.1 330823592 10481995 1014693..1015760 1 NC_015422.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: rpa:RPA3655 alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 1015760 10481995 Alide2_0971 Alicycliphilus denitrificans K601 alcohol dehydrogenase GroES domain-containing protein YP_004386895.1 1014693 D 596154 CDS YP_004386896.1 330823593 10481996 complement(1015763..1016845) 1 NC_015422.1 PFAM: Lactonase, 7-bladed beta propeller; KEGG: dac:Daci_4552 putative hemagglutinin-related protein; lactonase 1016845 10481996 Alide2_0972 Alicycliphilus denitrificans K601 lactonase YP_004386896.1 1015763 R 596154 CDS YP_004386897.1 330823594 10481997 complement(1016842..1017579) 1 NC_015422.1 KEGG: dac:Daci_4553 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 1017579 10481997 Alide2_0973 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004386897.1 1016842 R 596154 CDS YP_004386898.1 330823595 10481998 complement(1017592..1018533) 1 NC_015422.1 KEGG: dac:Daci_4554 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; GntR family transcriptional regulator 1018533 10481998 Alide2_0974 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004386898.1 1017592 R 596154 CDS YP_004386899.1 330823596 10481999 complement(1018530..1021184) 1 NC_015422.1 KEGG: dac:Daci_4555 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; Aconitate hydratase 1021184 10481999 Alide2_0975 Alicycliphilus denitrificans K601 Aconitate hydratase YP_004386899.1 1018530 R 596154 CDS YP_004386900.1 330823597 10482000 1021270..1022241 1 NC_015422.1 KEGG: vap:Vapar_6186 hypothetical protein; hypothetical protein 1022241 10482000 Alide2_0976 Alicycliphilus denitrificans K601 hypothetical protein YP_004386900.1 1021270 D 596154 CDS YP_004386901.1 330823598 10482001 1022296..1023285 1 NC_015422.1 KEGG: dac:Daci_4557 hypothetical protein; hypothetical protein 1023285 10482001 Alide2_0977 Alicycliphilus denitrificans K601 hypothetical protein YP_004386901.1 1022296 D 596154 CDS YP_004386902.1 330823599 10482002 1023400..1023756 1 NC_015422.1 PFAM: Divalent ion tolerance protein, CutA1; KEGG: dia:Dtpsy_2844 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 1023756 10482002 Alide2_0978 Alicycliphilus denitrificans K601 CutA1 divalent ion tolerance protein YP_004386902.1 1023400 D 596154 CDS YP_004386903.1 330823600 10482003 complement(1023771..1024937) 1 NC_015422.1 KEGG: dac:Daci_3339 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; mandelate racemase/muconate lactonizing protein 1024937 10482003 Alide2_0979 Alicycliphilus denitrificans K601 mandelate racemase/muconate lactonizing protein YP_004386903.1 1023771 R 596154 CDS YP_004386904.1 330823601 10482004 complement(1024963..1025667) 1 NC_015422.1 KEGG: vap:Vapar_5678 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 1025667 10482004 Alide2_0980 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004386904.1 1024963 R 596154 CDS YP_004386905.1 330823602 10482005 complement(1025657..1026622) 1 NC_015422.1 KEGG: dac:Daci_3341 hypothetical protein; hypothetical protein 1026622 10482005 Alide2_0981 Alicycliphilus denitrificans K601 hypothetical protein YP_004386905.1 1025657 R 596154 CDS YP_004386906.1 330823603 10482006 complement(1026654..1027592) 1 NC_015422.1 KEGG: dac:Daci_3342 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase 1027592 10482006 Alide2_0982 Alicycliphilus denitrificans K601 dihydrodipicolinate synthase YP_004386906.1 1026654 R 596154 CDS YP_004386907.1 330823604 10482007 1027711..1028664 1 NC_015422.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: aav:Aave_1392 LysR family transcriptional regulator; LysR family transcriptional regulator 1028664 10482007 Alide2_0983 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386907.1 1027711 D 596154 CDS YP_004386908.1 330823605 10482008 complement(1028678..1029802) 1 NC_015422.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: dia:Dtpsy_2843 signal recognition particle-docking protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core; signal recognition particle-docking protein FtsY 1029802 10482008 Alide2_0984 Alicycliphilus denitrificans K601 signal recognition particle-docking protein FtsY YP_004386908.1 1028678 R 596154 CDS YP_004386909.1 330823606 10482009 1029832..1031262 1 NC_015422.1 KEGG: dia:Dtpsy_2842 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; processing peptidase 1031262 10482009 Alide2_0985 Alicycliphilus denitrificans K601 processing peptidase YP_004386909.1 1029832 D 596154 CDS YP_004386910.1 330823607 10482010 1031276..1032634 1 NC_015422.1 KEGG: dia:Dtpsy_2841 peptidase M16 domain protein; manually curated; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; peptidase M16 domain-containing protein 1032634 10482010 Alide2_0986 Alicycliphilus denitrificans K601 peptidase M16 domain-containing protein YP_004386910.1 1031276 D 596154 CDS YP_004386911.1 330823608 10482011 1032631..1033221 1 NC_015422.1 TIGRFAM: RNA methyltransferase, RsmD; KEGG: dia:Dtpsy_2840 methyltransferase; PFAM: RNA methyltransferase, RsmD; methyltransferase 1033221 10482011 Alide2_0987 Alicycliphilus denitrificans K601 methyltransferase YP_004386911.1 1032631 D 596154 CDS YP_004386912.1 330823609 10482012 1033349..1033837 1 NC_015422.1 TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; KEGG: dia:Dtpsy_2839 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase; pantetheine-phosphate adenylyltransferase 1033837 10482012 Alide2_0988 Alicycliphilus denitrificans K601 pantetheine-phosphate adenylyltransferase YP_004386912.1 1033349 D 596154 CDS YP_004386913.1 330823610 10482013 complement(1033993..1034307) 1 NC_015422.1 KEGG: dia:Dtpsy_2837 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria; transport-associated protein 1034307 10482013 Alide2_0989 Alicycliphilus denitrificans K601 transport-associated protein YP_004386913.1 1033993 R 596154 CDS YP_004386914.1 330823611 10482014 complement(1034446..1034838) 1 NC_015422.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_2835 hypothetical protein; hypothetical protein 1034838 10482014 Alide2_0990 Alicycliphilus denitrificans K601 hypothetical protein YP_004386914.1 1034446 R 596154 CDS YP_004386915.1 330823612 10482015 complement(1034904..1035068) 1 NC_015422.1 PFAM: Protein of unknown function DUF1328; KEGG: dia:Dtpsy_2834 hypothetical protein; hypothetical protein 1035068 10482015 Alide2_0991 Alicycliphilus denitrificans K601 hypothetical protein YP_004386915.1 1034904 R 596154 CDS YP_004386916.1 330823613 10482016 complement(1035211..1036554) 1 NC_015422.1 KEGG: ajs:Ajs_3510 multi-sensor signal transduction histidine kinase; PFAM: CHASE3; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; multi-sensor signal transduction histidine kinase 1036554 10482016 Alide2_0992 Alicycliphilus denitrificans K601 multi-sensor signal transduction histidine kinase YP_004386916.1 1035211 R 596154 CDS YP_004386917.1 330823614 10482017 1036664..1037296 1 NC_015422.1 KEGG: dia:Dtpsy_2832 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator 1037296 10482017 Alide2_0993 Alicycliphilus denitrificans K601 two component LuxR family transcriptional regulator YP_004386917.1 1036664 D 596154 CDS YP_004386918.1 330823615 10482018 complement(1037274..1037693) 1 NC_015422.1 KEGG: dia:Dtpsy_2831 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver 1037693 10482018 Alide2_0994 Alicycliphilus denitrificans K601 response regulator receiver YP_004386918.1 1037274 R 596154 CDS YP_004386919.1 330823616 10482019 complement(1037799..1038563) 1 NC_015422.1 PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: ajs:Ajs_3507 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 1038563 10482019 Alide2_0995 Alicycliphilus denitrificans K601 UBA/THIF-type NAD/FAD binding protein YP_004386919.1 1037799 R 596154 CDS YP_004386920.1 330823617 10482020 complement(1038631..1040067) 1 NC_015422.1 TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: ajs:Ajs_3506 C-terminal processing peptidase-3; SMART: Peptidase S41; PDZ/DHR/GLGF; carboxyl-terminal protease 1040067 10482020 Alide2_0996 Alicycliphilus denitrificans K601 carboxyl-terminal protease YP_004386920.1 1038631 R 596154 CDS YP_004386921.1 330823618 10482021 complement(1040154..1040897) 1 NC_015422.1 SMART: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; KEGG: ajs:Ajs_3505 phosphoglyceromutase; PFAM: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase 1040897 10482021 Alide2_0997 Alicycliphilus denitrificans K601 phosphoglycerate mutase YP_004386921.1 1040154 R 596154 CDS YP_004386922.1 330823619 10482022 1040971..1041378 1 NC_015422.1 KEGG: dia:Dtpsy_2827 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein 1041378 10482022 Alide2_0998 Alicycliphilus denitrificans K601 rhodanese-like protein YP_004386922.1 1040971 D 596154 CDS YP_004386923.1 330823620 10482023 1041427..1041690 1 NC_015422.1 KEGG: dia:Dtpsy_2826 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin; glutaredoxin 3 1041690 10482023 Alide2_0999 Alicycliphilus denitrificans K601 glutaredoxin 3 YP_004386923.1 1041427 D 596154 CDS YP_004386924.1 330823621 10482024 1041793..1042248 1 NC_015422.1 KEGG: dia:Dtpsy_2825 preprotein translocase subunit SecB; TIGRFAM: Bacterial protein export chaperone SecB; PFAM: Bacterial protein export chaperone SecB; protein-export protein SecB 1042248 10482024 Alide2_1000 Alicycliphilus denitrificans K601 protein-export protein SecB YP_004386924.1 1041793 D 596154 CDS YP_004386925.1 330823622 10482025 1042315..1043307 1 NC_015422.1 manually curated; HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; KEGG: xtr:100490244 glycerol-3-phosphate dehydrogenase [NAD(P)+]-like; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; glycerol-3-phosphate dehydrogenase (NAD(P)+) 1043307 10482025 Alide2_1001 Alicycliphilus denitrificans K601 glycerol-3-phosphate dehydrogenase (NAD(P)+) YP_004386925.1 1042315 D 596154 CDS YP_004386926.1 330823623 10482026 1043425..1044159 1 NC_015422.1 KEGG: pna:Pnap_3576 hypothetical protein; hypothetical protein 1044159 10482026 Alide2_1002 Alicycliphilus denitrificans K601 hypothetical protein YP_004386926.1 1043425 D 596154 CDS YP_004386927.1 330823624 10482027 complement(1044187..1045170) 1 NC_015422.1 KEGG: bpa:BPP0893 hypothetical protein; hypothetical protein 1045170 10482027 Alide2_1003 Alicycliphilus denitrificans K601 hypothetical protein YP_004386927.1 1044187 R 596154 CDS YP_004386928.1 330823625 10482028 complement(1045202..1045939) 1 NC_015422.1 PFAM: Protein of unknown function DUF81; KEGG: bpa:BPP0894 hypothetical protein; hypothetical protein 1045939 10482028 Alide2_1004 Alicycliphilus denitrificans K601 hypothetical protein YP_004386928.1 1045202 R 596154 CDS YP_004386929.1 330823626 10482029 complement(1045954..1047480) 1 NC_015422.1 PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: bbr:BB0988 hypothetical protein; microcystin LR degradation protein MlrC 1047480 10482029 Alide2_1005 Alicycliphilus denitrificans K601 microcystin LR degradation protein MlrC YP_004386929.1 1045954 R 596154 CDS YP_004386930.1 330823627 10482030 complement(1047489..1048481) 1 NC_015422.1 KEGG: bpa:BPP0896 hypothetical protein; hypothetical protein 1048481 10482030 Alide2_1006 Alicycliphilus denitrificans K601 hypothetical protein YP_004386930.1 1047489 R 596154 CDS YP_004386931.1 330823628 10482031 1048598..1049488 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bbr:BB0990 LysR family transcriptional regulator; LysR family transcriptional regulator 1049488 10482031 Alide2_1007 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004386931.1 1048598 D 596154 CDS YP_004386932.1 330823629 10482032 complement(1049608..1050459) 1 NC_015422.1 KEGG: ajs:Ajs_3500 pantoate--beta-alanine ligase; TIGRFAM: Pantoate-beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 1050459 10482032 Alide2_1008 Alicycliphilus denitrificans K601 pantoate--beta-alanine ligase YP_004386932.1 1049608 R 596154 CDS YP_004386933.1 330823630 10482033 complement(1050471..1051355) 1 NC_015422.1 TIGRFAM: Ketopantoate hydroxymethyltransferase; KEGG: dia:Dtpsy_2822 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1051355 10482033 Alide2_1009 Alicycliphilus denitrificans K601 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004386933.1 1050471 R 596154 CDS YP_004386934.1 330823631 10482035 1051674..1052555 1 NC_015422.1 TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: dia:Dtpsy_2821 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal; nicotinate-nucleotide pyrophosphorylase 1052555 10482035 Alide2_1011 Alicycliphilus denitrificans K601 nicotinate-nucleotide pyrophosphorylase YP_004386934.1 1051674 D 596154 CDS YP_004386935.1 330823632 10482036 1052777..1053901 1 NC_015422.1 TIGRFAM: Quinolinate synthetase A; KEGG: dia:Dtpsy_2820 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A 1053901 10482036 Alide2_1012 Alicycliphilus denitrificans K601 quinolinate synthetase complex subunit A YP_004386935.1 1052777 D 596154 CDS YP_004386936.1 330823633 10482037 1053955..1055697 1 NC_015422.1 TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: ajs:Ajs_3496 para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding, C-terminal; Aminotransferase, class IV; para-aminobenzoate synthase subunit I 1055697 10482037 Alide2_1013 Alicycliphilus denitrificans K601 para-aminobenzoate synthase subunit I YP_004386936.1 1053955 D 596154 CDS YP_004386937.1 330823634 10482038 complement(1055835..1056197) 1 NC_015422.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: dia:Dtpsy_2818 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 1056197 10482038 Alide2_1014 Alicycliphilus denitrificans K601 5-carboxymethyl-2-hydroxymuconate isomerase YP_004386937.1 1055835 R 596154 CDS YP_004386938.1 330823635 10482039 complement(1056245..1057819) 1 NC_015422.1 TIGRFAM: L-aspartate oxidase; KEGG: vei:Veis_1080 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; L-aspartate oxidase 1057819 10482039 Alide2_1015 Alicycliphilus denitrificans K601 L-aspartate oxidase YP_004386938.1 1056245 R 596154 CDS YP_004386939.1 330823636 10482040 complement(1057911..1058780) 1 NC_015422.1 KEGG: reh:H16_A1911 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; AraC family transcriptional regulator 1058780 10482040 Alide2_1016 Alicycliphilus denitrificans K601 AraC family transcriptional regulator YP_004386939.1 1057911 R 596154 CDS YP_004386940.1 330823637 10482041 1058876..1059430 1 NC_015422.1 KEGG: axy:AXYL_05773 carboxymuconolactone decarboxylase family protein 5; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 1059430 10482041 Alide2_1017 Alicycliphilus denitrificans K601 peroxidase-like protein YP_004386940.1 1058876 D 596154 CDS YP_004386941.1 330823638 10482042 complement(1059415..1060251) 1 NC_015422.1 PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: ajs:Ajs_3492 condensin subunit ScpA; chromosome segregation and condensation protein ScpA 1060251 10482042 Alide2_1018 Alicycliphilus denitrificans K601 chromosome segregation and condensation protein ScpA YP_004386941.1 1059415 R 596154 CDS YP_004386942.1 330823639 10482043 complement(1060317..1060532) 1 NC_015422.1 PFAM: Protein of unknown function DUF3460; KEGG: ajs:Ajs_3491 hypothetical protein; hypothetical protein 1060532 10482043 Alide2_1019 Alicycliphilus denitrificans K601 hypothetical protein YP_004386942.1 1060317 R 596154 CDS YP_004386943.1 330823640 10482044 1060578..1061078 1 NC_015422.1 KEGG: dac:Daci_1840 putative lipoprotein; hypothetical protein 1061078 10482044 Alide2_1020 Alicycliphilus denitrificans K601 hypothetical protein YP_004386943.1 1060578 D 596154 CDS YP_004386944.1 330823641 10482045 complement(1061085..1062737) 1 NC_015422.1 KEGG: ajs:Ajs_3488 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; acetolactate synthase 1062737 10482045 Alide2_1021 Alicycliphilus denitrificans K601 acetolactate synthase YP_004386944.1 1061085 R 596154 CDS YP_004386945.1 330823642 10482046 complement(1062806..1063957) 1 NC_015422.1 KEGG: ajs:Ajs_3487 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase; L-lactate dehydrogenase (cytochrome) 1063957 10482046 Alide2_1022 Alicycliphilus denitrificans K601 L-lactate dehydrogenase (cytochrome) YP_004386945.1 1062806 R 596154 CDS YP_004386946.1 330823643 10482047 complement(1063954..1065564) 1 NC_015422.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: dia:Dtpsy_2809 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 1065564 10482047 Alide2_1023 Alicycliphilus denitrificans K601 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004386946.1 1063954 R 596154 CDS YP_004386947.1 330823644 10482048 1065659..1066666 1 NC_015422.1 KEGG: ajs:Ajs_3485 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; Helix-turn-helix, Fis-type; SMART: Helix-turn-helix, AraC type, DNA binding domain; Fis family transcriptional regulator 1066666 10482048 Alide2_1024 Alicycliphilus denitrificans K601 Fis family transcriptional regulator YP_004386947.1 1065659 D 596154 CDS YP_004386948.1 330823645 10482049 complement(1066752..1067468) 1 NC_015422.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: tmz:Tmz1t_0983 glutamine amidotransferase; glutamine amidotransferase 1067468 10482049 Alide2_1025 Alicycliphilus denitrificans K601 glutamine amidotransferase YP_004386948.1 1066752 R 596154 CDS YP_004386949.1 330823646 10482050 complement(1067465..1068259) 1 NC_015422.1 KEGG: dac:Daci_3709 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal; hypothetical protein 1068259 10482050 Alide2_1026 Alicycliphilus denitrificans K601 hypothetical protein YP_004386949.1 1067465 R 596154 CDS YP_004386950.1 330823647 10482051 complement(1068256..1069473) 1 NC_015422.1 KEGG: dac:Daci_3710 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein; benzoate transporter 1069473 10482051 Alide2_1027 Alicycliphilus denitrificans K601 benzoate transporter YP_004386950.1 1068256 R 596154 CDS YP_004386951.1 330823648 10482052 1069563..1071035 1 NC_015422.1 KEGG: tmz:Tmz1t_0986 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR; GntR family transcriptional regulator 1071035 10482052 Alide2_1028 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004386951.1 1069563 D 596154 CDS YP_004386952.1 330823649 10482053 complement(1071209..1071436) 1 NC_015422.1 KEGG: dac:Daci_1842 hypothetical protein; hypothetical protein 1071436 10482053 Alide2_1029 Alicycliphilus denitrificans K601 hypothetical protein YP_004386952.1 1071209 R 596154 CDS YP_004386953.1 330823650 10482054 complement(1071453..1073522) 1 NC_015422.1 TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; KEGG: dia:Dtpsy_2806 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; methionyl-tRNA synthetase 1073522 10482054 Alide2_1030 Alicycliphilus denitrificans K601 methionyl-tRNA synthetase YP_004386953.1 1071453 R 596154 CDS YP_004386954.1 330823651 10482055 complement(1073602..1074843) 1 NC_015422.1 PFAM: Patatin/Phospholipase A2-related; KEGG: dia:Dtpsy_2805 patatin; patatin 1074843 10482055 Alide2_1031 Alicycliphilus denitrificans K601 patatin YP_004386954.1 1073602 R 596154 CDS YP_004386955.1 330823652 10482056 complement(1074868..1075443) 1 NC_015422.1 PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: dia:Dtpsy_2804 restriction endonuclease; restriction endonuclease 1075443 10482056 Alide2_1032 Alicycliphilus denitrificans K601 restriction endonuclease YP_004386955.1 1074868 R 596154 CDS YP_004386956.1 330823653 10482057 complement(1075630..1076679) 1 NC_015422.1 KEGG: dia:Dtpsy_2803 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese-like; tRNA 2-selenouridine synthase 1076679 10482057 Alide2_1033 Alicycliphilus denitrificans K601 tRNA 2-selenouridine synthase YP_004386956.1 1075630 R 596154 CDS YP_004386957.1 330823654 10482058 1076738..1077799 1 NC_015422.1 TIGRFAM: Selenide water dikinase; HAMAP: Selenide, water dikinase, class I; KEGG: ajs:Ajs_3479 selenophosphate synthase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal; Selenide, water dikinase 1077799 10482058 Alide2_1034 Alicycliphilus denitrificans K601 Selenide, water dikinase YP_004386957.1 1076738 D 596154 CDS YP_004386958.1 330823655 10482059 1077796..1078869 1 NC_015422.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: dia:Dtpsy_2801 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 1078869 10482059 Alide2_1035 Alicycliphilus denitrificans K601 C4-dicarboxylate transporter/malic acid transport protein YP_004386958.1 1077796 D 596154 CDS YP_004386959.1 330823656 10482060 1078936..1080027 1 NC_015422.1 PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; KEGG: ajs:Ajs_3476 hypothetical protein; ParA/MinD-like ATPase 1080027 10482060 Alide2_1036 Alicycliphilus denitrificans K601 ParA/MinD-like ATPase YP_004386959.1 1078936 D 596154 CDS YP_004386960.1 330823657 10482061 1080213..1080716 1 NC_015422.1 PFAM: MaoC-like dehydratase; KEGG: bpt:Bpet0844 hypothetical protein; MaoC domain-containing protein dehydratase 1080716 10482061 Alide2_1037 Alicycliphilus denitrificans K601 MaoC domain-containing protein dehydratase YP_004386960.1 1080213 D 596154 CDS YP_004386961.1 330823658 10482062 1080766..1081746 1 NC_015422.1 KEGG: vap:Vapar_0801 hypothetical protein; hypothetical protein 1081746 10482062 Alide2_1038 Alicycliphilus denitrificans K601 hypothetical protein YP_004386961.1 1080766 D 596154 CDS YP_004386962.1 330823659 10482063 1081754..1083205 1 NC_015422.1 PFAM: MmgE/PrpD; KEGG: bpt:Bpet0850 hypothetical protein; MmgE/PrpD family protein 1083205 10482063 Alide2_1039 Alicycliphilus denitrificans K601 MmgE/PrpD family protein YP_004386962.1 1081754 D 596154 CDS YP_004386963.1 330823660 10482064 1083202..1084374 1 NC_015422.1 KEGG: bpt:Bpet0851 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; isovaleryl-CoA dehydrogenase 1084374 10482064 Alide2_1040 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004386963.1 1083202 D 596154 CDS YP_004386964.1 330823661 10482065 1084371..1085600 1 NC_015422.1 KEGG: bpt:Bpet0852 hypothetical protein; PFAM: CoA-transferase family III; formyl-CoA transferase 1085600 10482065 Alide2_1041 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004386964.1 1084371 D 596154 CDS YP_004386965.1 330823662 10482066 1085597..1086412 1 NC_015422.1 KEGG: bpt:Bpet0853 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; GntR family transcriptional regulator 1086412 10482066 Alide2_1042 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004386965.1 1085597 D 596154 CDS YP_004386966.1 330823663 10482067 1086409..1087611 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: rfr:Rfer_4176 major facilitator transporter; major facilitator superfamily protein 1087611 10482067 Alide2_1043 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004386966.1 1086409 D 596154 CDS YP_004386967.1 330823664 10482068 1087642..1088448 1 NC_015422.1 PFAM: Aldehyde-lyase domain; KEGG: bpy:Bphyt_0618 citrate (pro-3S)-lyase; HpcH/HpaI aldolase 1088448 10482068 Alide2_1044 Alicycliphilus denitrificans K601 HpcH/HpaI aldolase YP_004386967.1 1087642 D 596154 CDS YP_004386968.1 330823665 10482069 1088562..1090463 1 NC_015422.1 KEGG: dia:Dtpsy_2798 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH:ubiquinone oxidoreductase, 24kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; respiratory-chain NADH dehydrogenase domain 51 kDa subunit 1090463 10482069 Alide2_1045 Alicycliphilus denitrificans K601 respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_004386968.1 1088562 D 596154 CDS YP_004386969.1 330823666 10482070 1090460..1093321 1 NC_015422.1 SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Formate dehydrogenase, alpha subunit; KEGG: dia:Dtpsy_2797 formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Ferredoxin; 4Fe-4S binding domain; Molydopterin dinucleotide-binding domain; formate dehydrogenase subunit alpha 1093321 10482070 Alide2_1046 Alicycliphilus denitrificans K601 formate dehydrogenase subunit alpha YP_004386969.1 1090460 D 596154 CDS YP_004386970.1 330823667 10482071 1093332..1093895 1 NC_015422.1 manually curated; KEGG: dia:Dtpsy_2796 hypothetical protein; hypothetical protein 1093895 10482071 Alide2_1047 Alicycliphilus denitrificans K601 hypothetical protein YP_004386970.1 1093332 D 596154 CDS YP_004386971.1 330823668 10482072 1093888..1094496 1 NC_015422.1 KEGG: ajs:Ajs_3468 hypothetical protein; hypothetical protein 1094496 10482072 Alide2_1048 Alicycliphilus denitrificans K601 hypothetical protein YP_004386971.1 1093888 D 596154 CDS YP_004386972.1 330823669 10482073 1094456..1096519 1 NC_015422.1 PFAM: 4Fe-4S binding domain; KEGG: ajs:Ajs_3467 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 1096519 10482073 Alide2_1049 Alicycliphilus denitrificans K601 4Fe-4S ferredoxin YP_004386972.1 1094456 D 596154 CDS YP_004386973.1 330823670 10482074 1096516..1097151 1 NC_015422.1 KEGG: dia:Dtpsy_2793 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 1097151 10482074 Alide2_1050 Alicycliphilus denitrificans K601 cytoplasmic chaperone TorD family protein YP_004386973.1 1096516 D 596154 CDS YP_004386974.1 330823671 10482075 1097287..1097499 1 NC_015422.1 TIGRFAM: Formate dehydrogenase, TAT signal-containing; KEGG: dia:Dtpsy_2792 formate dehydrogenase region TAT target; formate dehydrogenase region TAT target 1097499 10482075 Alide2_1051 Alicycliphilus denitrificans K601 formate dehydrogenase region TAT target YP_004386974.1 1097287 D 596154 CDS YP_004386975.1 330823672 10482076 1097521..1100493 1 NC_015422.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; KEGG: dia:Dtpsy_2791 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; nitrate reductase 1100493 10482076 Alide2_1052 Alicycliphilus denitrificans K601 nitrate reductase YP_004386975.1 1097521 D 596154 CDS YP_004386976.1 330823673 10482077 1100521..1101141 1 NC_015422.1 PFAM: 4Fe-4S binding domain; KEGG: dia:Dtpsy_2790 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1101141 10482077 Alide2_1053 Alicycliphilus denitrificans K601 4Fe-4S ferredoxin YP_004386976.1 1100521 D 596154 CDS YP_004386977.1 330823674 10482078 1101138..1101371 1 NC_015422.1 KEGG: dia:Dtpsy_2789 putative lipoprotein; hypothetical protein 1101371 10482078 Alide2_1054 Alicycliphilus denitrificans K601 hypothetical protein YP_004386977.1 1101138 D 596154 CDS YP_004386978.1 330823675 10482079 1101385..1102581 1 NC_015422.1 KEGG: ajs:Ajs_3461 formate dehydrogenase gamma subunit; TIGRFAM: Formate dehydrogenase, gamma subunit; PFAM: Cytochrome b/b6, N-terminal; formate dehydrogenase subunit gamma 1102581 10482079 Alide2_1055 Alicycliphilus denitrificans K601 formate dehydrogenase subunit gamma YP_004386978.1 1101385 D 596154 CDS YP_004386979.1 330823676 10482080 1102578..1102898 1 NC_015422.1 KEGG: dia:Dtpsy_2787 hypothetical protein; hypothetical protein 1102898 10482080 Alide2_1056 Alicycliphilus denitrificans K601 hypothetical protein YP_004386979.1 1102578 D 596154 CDS YP_004386980.1 330823677 10482081 1102978..1103844 1 NC_015422.1 PFAM: Formate dehydrogenase, subunit FdhD; KEGG: dia:Dtpsy_2786 formate dehydrogenase subunit FdhD; formate dehydrogenase subunit FdhD 1103844 10482081 Alide2_1057 Alicycliphilus denitrificans K601 formate dehydrogenase subunit FdhD YP_004386980.1 1102978 D 596154 CDS YP_004386981.1 330823678 10482082 1103854..1106385 1 NC_015422.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2785 protein of unknown function DUF214; hypothetical protein 1106385 10482082 Alide2_1058 Alicycliphilus denitrificans K601 hypothetical protein YP_004386981.1 1103854 D 596154 CDS YP_004386982.1 330823679 10482083 1106388..1106615 1 NC_015422.1 KEGG: dia:Dtpsy_2784 hypothetical protein; hypothetical protein 1106615 10482083 Alide2_1059 Alicycliphilus denitrificans K601 hypothetical protein YP_004386982.1 1106388 D 596154 CDS YP_004386983.1 330823680 10482084 1106669..1108225 1 NC_015422.1 KEGG: ajs:Ajs_3456 hypothetical protein; hypothetical protein 1108225 10482084 Alide2_1060 Alicycliphilus denitrificans K601 hypothetical protein YP_004386983.1 1106669 D 596154 CDS YP_004386984.1 330823681 10482085 1108269..1108661 1 NC_015422.1 KEGG: dia:Dtpsy_2782 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 1108661 10482085 Alide2_1061 Alicycliphilus denitrificans K601 TraR/DksA family transcriptional regulator YP_004386984.1 1108269 D 596154 CDS YP_004386985.1 330823682 10482086 1108661..1109098 1 NC_015422.1 PFAM: Globin, truncated bacterial-like; KEGG: ajs:Ajs_3454 globin; globin 1109098 10482086 Alide2_1062 Alicycliphilus denitrificans K601 globin YP_004386985.1 1108661 D 596154 CDS YP_004386986.1 330823683 10482087 complement(1109148..1109906) 1 NC_015422.1 KEGG: reu:Reut_B4840 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 1109906 10482087 Alide2_1063 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004386986.1 1109148 R 596154 CDS YP_004386987.1 330823684 10482088 complement(1110000..1110854) 1 NC_015422.1 PFAM: Isocitrate lyase/phosphorylmutase; KEGG: reu:Reut_B4841 2,3-dimethylmalate lyase; isocitrate lyase and phosphorylmutase 1110854 10482088 Alide2_1064 Alicycliphilus denitrificans K601 isocitrate lyase and phosphorylmutase YP_004386987.1 1110000 R 596154 CDS YP_004386988.1 330823685 10482089 complement(1110851..1111420) 1 NC_015422.1 KEGG: reu:Reut_B4842 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, subgroup; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; 3-isopropylmalate dehydratase small subunit 1111420 10482089 Alide2_1065 Alicycliphilus denitrificans K601 3-isopropylmalate dehydratase small subunit YP_004386988.1 1110851 R 596154 CDS YP_004386989.1 330823686 10482090 complement(1111417..1112697) 1 NC_015422.1 KEGG: xtr:100490803 isopropylmalate/citramalate isomerase large subunit-like; TIGRFAM: Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; homoaconitate hydratase family protein 1112697 10482090 Alide2_1066 Alicycliphilus denitrificans K601 homoaconitate hydratase family protein YP_004386989.1 1111417 R 596154 CDS YP_004386990.1 330823687 10482091 complement(1112694..1113662) 1 NC_015422.1 KEGG: xtr:100490977 UPF0065 protein in tcbD-tcbE intergenic region-like; hypothetical protein 1113662 10482091 Alide2_1067 Alicycliphilus denitrificans K601 hypothetical protein YP_004386990.1 1112694 R 596154 CDS YP_004386991.1 330823688 10482092 complement(1113760..1114410) 1 NC_015422.1 KEGG: dia:Dtpsy_2779 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal; Smr protein/MutS2 1114410 10482092 Alide2_1068 Alicycliphilus denitrificans K601 Smr protein/MutS2 YP_004386991.1 1113760 R 596154 CDS YP_004386992.1 330823689 10482093 complement(1114407..1115567) 1 NC_015422.1 KEGG: dia:Dtpsy_2778 hypothetical protein; hypothetical protein 1115567 10482093 Alide2_1069 Alicycliphilus denitrificans K601 hypothetical protein YP_004386992.1 1114407 R 596154 CDS YP_004386993.1 330823690 10482094 complement(1115564..1116277) 1 NC_015422.1 KEGG: ajs:Ajs_3450 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758; DNA repair protein RadC 1116277 10482094 Alide2_1070 Alicycliphilus denitrificans K601 DNA repair protein RadC YP_004386993.1 1115564 R 596154 CDS YP_004386994.1 330823691 10482095 1116359..1116835 1 NC_015422.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dia:Dtpsy_2776 peptidylprolyl isomerase FKBP-type; FKBP-type peptidylprolyl isomerase 1116835 10482095 Alide2_1071 Alicycliphilus denitrificans K601 FKBP-type peptidylprolyl isomerase YP_004386994.1 1116359 D 596154 CDS YP_004386995.1 330823692 10482096 1116841..1117824 1 NC_015422.1 PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: ajs:Ajs_3448 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1117824 10482096 Alide2_1072 Alicycliphilus denitrificans K601 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_004386995.1 1116841 D 596154 CDS YP_004386996.1 330823693 10482097 1118032..1119360 1 NC_015422.1 KEGG: ajs:Ajs_3447 hypothetical protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core; hypothetical protein 1119360 10482097 Alide2_1073 Alicycliphilus denitrificans K601 hypothetical protein YP_004386996.1 1118032 D 596154 CDS YP_004386997.1 330823694 10482098 complement(1119382..1120059) 1 NC_015422.1 KEGG: aav:Aave_3769 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; signal transduction protein 1120059 10482098 Alide2_1074 Alicycliphilus denitrificans K601 signal transduction protein YP_004386997.1 1119382 R 596154 CDS YP_004386998.1 330823695 10482099 1120112..1121428 1 NC_015422.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase, class IIa; KEGG: dia:Dtpsy_2772 seryl-tRNA synthetase; seryl-tRNA synthetase 1121428 10482099 Alide2_1075 Alicycliphilus denitrificans K601 seryl-tRNA synthetase YP_004386998.1 1120112 D 596154 CDS YP_004386999.1 330823696 10482100 1121486..1122427 1 NC_015422.1 KEGG: dac:Daci_5376 hypothetical protein; hypothetical protein 1122427 10482100 Alide2_1076 Alicycliphilus denitrificans K601 hypothetical protein YP_004386999.1 1121486 D 596154 CDS YP_004387000.1 330823697 10482102 complement(1122666..1122953) 1 NC_015422.1 KEGG: mca:MCA1626 hypothetical protein; hypothetical protein 1122953 10482102 Alide2_1077 Alicycliphilus denitrificans K601 hypothetical protein YP_004387000.1 1122666 R 596154 CDS YP_004387001.1 330823698 10482103 complement(1122950..1123474) 1 NC_015422.1 hypothetical protein 1123474 10482103 Alide2_1078 Alicycliphilus denitrificans K601 hypothetical protein YP_004387001.1 1122950 R 596154 CDS YP_004387002.1 330823699 10482104 complement(1123488..1124783) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: pol:Bpro_0966 phage integrase; integrase family protein 1124783 10482104 Alide2_1079 Alicycliphilus denitrificans K601 integrase family protein YP_004387002.1 1123488 R 596154 CDS YP_004387003.1 330823700 10482105 complement(1125367..1125864) 1 NC_015422.1 PFAM: Protein of unknown function DUF1643; KEGG: mtt:Ftrac_0456 hypothetical protein; hypothetical protein 1125864 10482105 Alide2_1080 Alicycliphilus denitrificans K601 hypothetical protein YP_004387003.1 1125367 R 596154 CDS YP_004387004.1 330823701 10482106 1125984..1126217 1 NC_015422.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: pde:Pden_0455 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 1126217 10482106 Alide2_1081 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004387004.1 1125984 D 596154 CDS YP_004387005.1 330823702 10482107 complement(1127083..1129488) 1 NC_015422.1 KEGG: ppn:Palpr_2996 hypothetical protein; hypothetical protein 1129488 10482107 Alide2_1082 Alicycliphilus denitrificans K601 hypothetical protein YP_004387005.1 1127083 R 596154 CDS YP_004387006.1 330823703 10482108 complement(1129735..1131000) 1 NC_015422.1 KEGG: pol:Bpro_0961 hypothetical protein; manually curated; SMART: ATPase, AAA+ type, core; AAA ATPase 1131000 10482108 Alide2_1083 Alicycliphilus denitrificans K601 AAA ATPase YP_004387006.1 1129735 R 596154 CDS YP_004387007.1 330823704 10482109 complement(1131291..1131551) 1 NC_015422.1 hypothetical protein 1131551 10482109 Alide2_1084 Alicycliphilus denitrificans K601 hypothetical protein YP_004387007.1 1131291 R 596154 CDS YP_004387008.1 330823705 10482110 1132086..1132937 1 NC_015422.1 KEGG: app:CAP2UW1_1805 FRG domain protein; PFAM: FRG domain; SMART: FRG domain; FRG domain-containing protein 1132937 10482110 Alide2_1085 Alicycliphilus denitrificans K601 FRG domain-containing protein YP_004387008.1 1132086 D 596154 CDS YP_004387009.1 330823706 10482111 complement(1132989..1133204) 1 NC_015422.1 KEGG: rva:Rvan_1233 hypothetical protein; hypothetical protein 1133204 10482111 Alide2_1086 Alicycliphilus denitrificans K601 hypothetical protein YP_004387009.1 1132989 R 596154 CDS YP_004387010.1 330823707 10482113 1133490..1134431 1 NC_015422.1 KEGG: dac:Daci_5376 hypothetical protein; hypothetical protein 1134431 10482113 Alide2_1088 Alicycliphilus denitrificans K601 hypothetical protein YP_004387010.1 1133490 D 596154 CDS YP_004387011.1 330823708 10482115 1134699..1136636 1 NC_015422.1 KEGG: rfr:Rfer_0701 hypothetical protein; hypothetical protein 1136636 10482115 Alide2_1089 Alicycliphilus denitrificans K601 hypothetical protein YP_004387011.1 1134699 D 596154 CDS YP_004387012.1 330823709 10482116 1136819..1138213 1 NC_015422.1 TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Sugar transferase, PEP-CTERM system associated; KEGG: rfr:Rfer_0702 undecaprenyl-phosphate galactosephosphotransferase; PFAM: Bacterial sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 1138213 10482116 Alide2_1090 Alicycliphilus denitrificans K601 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_004387012.1 1136819 D 596154 CDS YP_004387013.1 330823710 10482117 complement(1138250..1140556) 1 NC_015422.1 KEGG: dac:Daci_5418 histidine kinase; PFAM: CHASE2; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; multi-sensor signal transduction histidine kinase 1140556 10482117 Alide2_1091 Alicycliphilus denitrificans K601 multi-sensor signal transduction histidine kinase YP_004387013.1 1138250 R 596154 CDS YP_004387014.1 330823711 10482118 complement(1140597..1142249) 1 NC_015422.1 KEGG: dac:Daci_5417 peptidoglycan-binding LysM; PFAM: FecR protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; FecR protein 1142249 10482118 Alide2_1092 Alicycliphilus denitrificans K601 FecR protein YP_004387014.1 1140597 R 596154 CDS YP_004387015.1 330823712 10482119 complement(1142373..1143104) 1 NC_015422.1 KEGG: ctt:CtCNB1_0831 two component transcriptional regulator, winged; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 1143104 10482119 Alide2_1093 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004387015.1 1142373 R 596154 CDS YP_004387016.1 330823713 10482120 complement(1143283..1144587) 1 NC_015422.1 TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: dia:Dtpsy_2771 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase 1144587 10482120 Alide2_1094 Alicycliphilus denitrificans K601 tryptophanyl-tRNA synthetase YP_004387016.1 1143283 R 596154 CDS YP_004387017.1 330823714 10482121 complement(1144599..1145267) 1 NC_015422.1 PFAM: Peptidase M50; KEGG: dia:Dtpsy_2770 peptidase M50; peptidase M50 1145267 10482121 Alide2_1095 Alicycliphilus denitrificans K601 peptidase M50 YP_004387017.1 1144599 R 596154 CDS YP_004387018.1 330823715 10482122 1145386..1146558 1 NC_015422.1 KEGG: dac:Daci_5413 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; methyl-accepting chemotaxis sensory transducer 1146558 10482122 Alide2_1096 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004387018.1 1145386 D 596154 CDS YP_004387019.1 330823716 10482123 complement(1146642..1147277) 1 NC_015422.1 KEGG: dia:Dtpsy_2764 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; Sua5/YciO/YrdC/YwlC family protein 1147277 10482123 Alide2_1097 Alicycliphilus denitrificans K601 Sua5/YciO/YrdC/YwlC family protein YP_004387019.1 1146642 R 596154 CDS YP_004387020.1 330823717 10482124 complement(1147283..1148251) 1 NC_015422.1 KEGG: dia:Dtpsy_2763 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; PHP domain-containing protein 1148251 10482124 Alide2_1098 Alicycliphilus denitrificans K601 PHP domain-containing protein YP_004387020.1 1147283 R 596154 CDS YP_004387021.1 330823718 10482125 1148336..1150099 1 NC_015422.1 KEGG: ajs:Ajs_3430 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 1150099 10482125 Alide2_1099 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004387021.1 1148336 D 596154 CDS YP_004387022.1 330823719 10482126 complement(1150160..1151875) 1 NC_015422.1 KEGG: ajs:Ajs_3424 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; single-stranded-DNA-specific exonuclease RecJ 1151875 10482126 Alide2_1100 Alicycliphilus denitrificans K601 single-stranded-DNA-specific exonuclease RecJ YP_004387022.1 1150160 R 596154 CDS YP_004387023.1 330823720 10482127 complement(1151872..1152822) 1 NC_015422.1 PFAM: Bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: dia:Dtpsy_2757 hypothetical protein; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1152822 10482127 Alide2_1101 Alicycliphilus denitrificans K601 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_004387023.1 1151872 R 596154 CDS YP_004387024.1 330823721 10482128 1152919..1154172 1 NC_015422.1 manually curated; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; KEGG: dia:Dtpsy_2755 lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Domain of unknown function DUF214, ABC transporter permease; lipoprotein releasing system transmembrane protein LolC/E family 1154172 10482128 Alide2_1102 Alicycliphilus denitrificans K601 lipoprotein releasing system transmembrane protein LolC/E family YP_004387024.1 1152919 D 596154 CDS YP_004387025.1 330823722 10482129 1154165..1154851 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Lipoprotein releasing system, ATP-binding protein; KEGG: dia:Dtpsy_2754 lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-like; lipoprotein releasing system, ATP-binding protein 1154851 10482129 Alide2_1103 Alicycliphilus denitrificans K601 lipoprotein releasing system, ATP-binding protein YP_004387025.1 1154165 D 596154 CDS YP_004387026.1 330823723 10482130 complement(1154980..1155282) 1 NC_015422.1 PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_0985 cytochrome c class I; cytochrome c class I 1155282 10482130 Alide2_1104 Alicycliphilus denitrificans K601 cytochrome c class I YP_004387026.1 1154980 R 596154 CDS YP_004387027.1 330823724 10482131 1155390..1155632 1 NC_015422.1 KEGG: dia:Dtpsy_0986 hypothetical protein; hypothetical protein 1155632 10482131 Alide2_1105 Alicycliphilus denitrificans K601 hypothetical protein YP_004387027.1 1155390 D 596154 CDS YP_004387028.1 330823725 10482132 complement(1155657..1157348) 1 NC_015422.1 TIGRFAM: Dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0987 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1157348 10482132 Alide2_1106 Alicycliphilus denitrificans K601 dihydroxy-acid dehydratase YP_004387028.1 1155657 R 596154 CDS YP_004387029.1 330823726 10482133 1157577..1159433 1 NC_015422.1 TIGRFAM: Dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0988 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1159433 10482133 Alide2_1107 Alicycliphilus denitrificans K601 dihydroxy-acid dehydratase YP_004387029.1 1157577 D 596154 CDS YP_004387030.1 330823727 10482134 1159574..1160002 1 NC_015422.1 KEGG: dia:Dtpsy_0989 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein 1160002 10482134 Alide2_1108 Alicycliphilus denitrificans K601 phenylacetic acid degradation-like protein YP_004387030.1 1159574 D 596154 CDS YP_004387031.1 330823728 10482135 complement(1160005..1160472) 1 NC_015422.1 KEGG: dia:Dtpsy_0990 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein; bacterioferritin 1160472 10482135 Alide2_1109 Alicycliphilus denitrificans K601 bacterioferritin YP_004387031.1 1160005 R 596154 CDS YP_004387032.1 330823729 10482136 1160572..1161387 1 NC_015422.1 KEGG: dia:Dtpsy_0991 prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1161387 10482136 Alide2_1110 Alicycliphilus denitrificans K601 prolipoprotein diacylglyceryl transferase YP_004387032.1 1160572 D 596154 CDS YP_004387033.1 330823730 10482137 1161596..1162264 1 NC_015422.1 KEGG: dia:Dtpsy_0992 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; GntR family transcriptional regulator 1162264 10482137 Alide2_1111 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004387033.1 1161596 D 596154 CDS YP_004387034.1 330823731 10482138 1162261..1163688 1 NC_015422.1 KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase; malonyl-CoA decarboxylase 1163688 10482138 Alide2_1112 Alicycliphilus denitrificans K601 malonyl-CoA decarboxylase YP_004387034.1 1162261 D 596154 CDS YP_004387035.1 330823732 10482139 1163752..1164774 1 NC_015422.1 KEGG: dia:Dtpsy_0994 hypothetical protein; hypothetical protein 1164774 10482139 Alide2_1113 Alicycliphilus denitrificans K601 hypothetical protein YP_004387035.1 1163752 D 596154 CDS YP_004387036.1 330823733 10482140 1164784..1165605 1 NC_015422.1 PFAM: Crotonase, core; KEGG: ajs:Ajs_1079 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1165605 10482140 Alide2_1114 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387036.1 1164784 D 596154 CDS YP_004387037.1 330823734 10482141 1165616..1167169 1 NC_015422.1 KEGG: dia:Dtpsy_0996 malonyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 1167169 10482141 Alide2_1115 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004387037.1 1165616 D 596154 CDS YP_004387038.1 330823735 10482142 complement(1167279..1167722) 1 NC_015422.1 PFAM: UspA; KEGG: dia:Dtpsy_0997 UspA domain protein; UspA domain-containing protein 1167722 10482142 Alide2_1116 Alicycliphilus denitrificans K601 UspA domain-containing protein YP_004387038.1 1167279 R 596154 CDS YP_004387039.1 330823736 10482143 1167885..1170221 1 NC_015422.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_0998 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 1170221 10482143 Alide2_1117 Alicycliphilus denitrificans K601 heavy metal translocating P-type ATPase YP_004387039.1 1167885 D 596154 CDS YP_004387040.1 330823737 10482144 1170224..1170361 1 NC_015422.1 KEGG: dia:Dtpsy_0999 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type; cbb3-type cytochrome oxidase maturation protein 1170361 10482144 Alide2_1118 Alicycliphilus denitrificans K601 cbb3-type cytochrome oxidase maturation protein YP_004387040.1 1170224 D 596154 CDS YP_004387041.1 330823738 10482145 1170428..1171867 1 NC_015422.1 TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: dia:Dtpsy_1000 cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I; cytochrome c oxidase, cbb3-type subunit I 1171867 10482145 Alide2_1119 Alicycliphilus denitrificans K601 cytochrome c oxidase, cbb3-type subunit I YP_004387041.1 1170428 D 596154 CDS YP_004387042.1 330823739 10482146 1171887..1172519 1 NC_015422.1 KEGG: dia:Dtpsy_1001 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO; cytochrome c oxidase, cbb3-type subunit II 1172519 10482146 Alide2_1120 Alicycliphilus denitrificans K601 cytochrome c oxidase, cbb3-type subunit II YP_004387042.1 1171887 D 596154 CDS YP_004387043.1 330823740 10482147 1172540..1172677 1 NC_015422.1 KEGG: dia:Dtpsy_1002 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 1172677 10482147 Alide2_1121 Alicycliphilus denitrificans K601 cbb3-type cytochrome oxidase subunit YP_004387043.1 1172540 D 596154 CDS YP_004387044.1 330823741 10482148 1172707..1173621 1 NC_015422.1 KEGG: ajs:Ajs_1087 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I; cytochrome c oxidase, cbb3-type subunit III 1173621 10482148 Alide2_1122 Alicycliphilus denitrificans K601 cytochrome c oxidase, cbb3-type subunit III YP_004387044.1 1172707 D 596154 CDS YP_004387045.1 330823742 10482149 1173706..1175148 1 NC_015422.1 TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG; cytochrome c oxidase accessory protein CcoG 1175148 10482149 Alide2_1123 Alicycliphilus denitrificans K601 cytochrome c oxidase accessory protein CcoG YP_004387045.1 1173706 D 596154 CDS YP_004387046.1 330823743 10482150 1175208..1175486 1 NC_015422.1 PFAM: FixH; KEGG: dia:Dtpsy_1005 hypothetical protein; FixH family protein 1175486 10482150 Alide2_1124 Alicycliphilus denitrificans K601 FixH family protein YP_004387046.1 1175208 D 596154 CDS YP_004387047.1 330823744 10482151 1175574..1175861 1 NC_015422.1 KEGG: dia:Dtpsy_1006 hypothetical protein; hypothetical protein 1175861 10482151 Alide2_1125 Alicycliphilus denitrificans K601 hypothetical protein YP_004387047.1 1175574 D 596154 CDS YP_004387048.1 330823745 10482152 complement(1175896..1176639) 1 NC_015422.1 KEGG: ajs:Ajs_1091 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator 1176639 10482152 Alide2_1126 Alicycliphilus denitrificans K601 Crp/Fnr family transcriptional regulator YP_004387048.1 1175896 R 596154 CDS YP_004387049.1 330823746 10482153 1176810..1178192 1 NC_015422.1 TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: dia:Dtpsy_1008 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 1178192 10482153 Alide2_1127 Alicycliphilus denitrificans K601 oxygen-independent coproporphyrinogen III oxidase YP_004387049.1 1176810 D 596154 CDS YP_004387050.1 330823747 10482154 1178196..1178918 1 NC_015422.1 KEGG: ajs:Ajs_1093 hypothetical protein; hypothetical protein 1178918 10482154 Alide2_1128 Alicycliphilus denitrificans K601 hypothetical protein YP_004387050.1 1178196 D 596154 CDS YP_004387051.1 330823748 10482155 1179079..1180326 1 NC_015422.1 TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: aav:Aave_1533 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase 1180326 10482155 Alide2_1129 Alicycliphilus denitrificans K601 metal dependent phosphohydrolase YP_004387051.1 1179079 D 596154 CDS YP_004387052.1 330823749 10482156 1180323..1182773 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; KEGG: dac:Daci_2786 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1182773 10482156 Alide2_1130 Alicycliphilus denitrificans K601 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_004387052.1 1180323 D 596154 CDS YP_004387053.1 330823750 10482158 complement(1183028..1183384) 1 NC_015422.1 PFAM: Cell division protein ZapA-like; KEGG: dia:Dtpsy_1010 protein of unknown function DUF710; hypothetical protein 1183384 10482158 Alide2_1131 Alicycliphilus denitrificans K601 hypothetical protein YP_004387053.1 1183028 R 596154 CDS YP_004387054.1 330823751 10482159 complement(1183381..1183620) 1 NC_015422.1 KEGG: ajs:Ajs_1095 hypothetical protein; hypothetical protein 1183620 10482159 Alide2_1132 Alicycliphilus denitrificans K601 hypothetical protein YP_004387054.1 1183381 R 596154 CDS YP_004387055.1 330823752 10482160 1184048..1185841 1 NC_015422.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: aav:Aave_1537 TonB-dependent receptor; TonB-dependent receptor plug 1185841 10482160 Alide2_1133 Alicycliphilus denitrificans K601 TonB-dependent receptor plug YP_004387055.1 1184048 D 596154 CDS YP_004387056.1 330823753 10482161 1186013..1187365 1 NC_015422.1 PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_1013 CobB/CobQ domain protein glutamine amidotransferase; CobB/CobQ domain-containing protein glutamine amidotransferase 1187365 10482161 Alide2_1134 Alicycliphilus denitrificans K601 CobB/CobQ domain-containing protein glutamine amidotransferase YP_004387056.1 1186013 D 596154 CDS YP_004387057.1 330823754 10482162 1187362..1187946 1 NC_015422.1 KEGG: dia:Dtpsy_1014 cobalbumin biosynthesis protein; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase; adenosylcobinamide-phosphate guanylyltransferase 1187946 10482162 Alide2_1135 Alicycliphilus denitrificans K601 adenosylcobinamide-phosphate guanylyltransferase YP_004387057.1 1187362 D 596154 CDS YP_004387058.1 330823755 10482163 1187943..1188842 1 NC_015422.1 PFAM: Periplasmic binding protein; KEGG: dia:Dtpsy_1015 periplasmic binding protein; ABC transporter substrate-binding protein 1188842 10482163 Alide2_1136 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004387058.1 1187943 D 596154 CDS YP_004387059.1 330823756 10482164 1188839..1189882 1 NC_015422.1 PFAM: ABC transporter permease protein; KEGG: dia:Dtpsy_1016 transport system permease protein; ABC transporter permease 1189882 10482164 Alide2_1137 Alicycliphilus denitrificans K601 ABC transporter permease YP_004387059.1 1188839 D 596154 CDS YP_004387060.1 330823757 10482165 1189879..1190655 1 NC_015422.1 manually curated; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1017 ABC transporter related; SMART: ATPase, AAA+ type, core; ABC transporter 1190655 10482165 Alide2_1138 Alicycliphilus denitrificans K601 ABC transporter YP_004387060.1 1189879 D 596154 CDS YP_004387061.1 330823758 10482166 1190679..1191248 1 NC_015422.1 TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: ctt:CtCNB1_1848 cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; cob(I)alamin adenosyltransferase 1191248 10482166 Alide2_1139 Alicycliphilus denitrificans K601 cob(I)alamin adenosyltransferase YP_004387061.1 1190679 D 596154 CDS YP_004387062.1 330823759 10482167 1191355..1191867 1 NC_015422.1 KEGG: dia:Dtpsy_1019 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Methylguanine DNA methyltransferase, ribonuclease-like; methylated-DNA--protein-cysteine methyltransferase 1191867 10482167 Alide2_1140 Alicycliphilus denitrificans K601 methylated-DNA--protein-cysteine methyltransferase YP_004387062.1 1191355 D 596154 CDS YP_004387063.1 330823760 10482168 complement(1191864..1192559) 1 NC_015422.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2354 methyltransferase type 11; type 11 methyltransferase 1192559 10482168 Alide2_1141 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004387063.1 1191864 R 596154 CDS YP_004387064.1 330823761 10482169 complement(1192620..1193690) 1 NC_015422.1 KEGG: gbm:Gbem_2134 NADPH-dependent enal/enone/nitroreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; NADPH dehydrogenase 1193690 10482169 Alide2_1142 Alicycliphilus denitrificans K601 NADPH dehydrogenase YP_004387064.1 1192620 R 596154 CDS YP_004387065.1 330823762 10482170 complement(1193763..1194728) 1 NC_015422.1 KEGG: reh:H16_B0202 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor 1194728 10482170 Alide2_1143 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor YP_004387065.1 1193763 R 596154 CDS YP_004387066.1 330823763 10482171 1194959..1196146 1 NC_015422.1 KEGG: pde:Pden_3227 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 1196146 10482171 Alide2_1144 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387066.1 1194959 D 596154 CDS YP_004387067.1 330823764 10482172 1196158..1196910 1 NC_015422.1 KEGG: ara:Arad_7507 3-oxoacyl-(acyl-carrier-protein) reductase protein; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 1196910 10482172 Alide2_1145 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004387067.1 1196158 D 596154 CDS YP_004387068.1 330823765 10482173 complement(1196941..1197702) 1 NC_015422.1 KEGG: axy:AXYL_06414 3-oxoacyl-[acyl-carrier-protein] reductase 10; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 1197702 10482173 Alide2_1146 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004387068.1 1196941 R 596154 CDS YP_004387069.1 330823766 10482174 complement(1197736..1198980) 1 NC_015422.1 KEGG: pag:PLES_04421 putative acyl-CoA transferase; PFAM: CoA-transferase family III; formyl-CoA transferase 1198980 10482174 Alide2_1147 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387069.1 1197736 R 596154 CDS YP_004387070.1 330823767 10482175 complement(1199012..1199821) 1 NC_015422.1 KEGG: azl:AZL_d00150 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxybutyrate dehydrogenase 1199821 10482175 Alide2_1148 Alicycliphilus denitrificans K601 3-hydroxybutyrate dehydrogenase YP_004387070.1 1199012 R 596154 CDS YP_004387071.1 330823768 10482176 complement(1199827..1200822) 1 NC_015422.1 KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein 1200822 10482176 Alide2_1149 Alicycliphilus denitrificans K601 hypothetical protein YP_004387071.1 1199827 R 596154 CDS YP_004387072.1 330823769 10482177 complement(1200924..1201493) 1 NC_015422.1 KEGG: vap:Vapar_5494 gamma-BHC dehydrochlorinase; gamma-BHC dehydrochlorinase 1201493 10482177 Alide2_1150 Alicycliphilus denitrificans K601 gamma-BHC dehydrochlorinase YP_004387072.1 1200924 R 596154 CDS YP_004387073.1 330823770 10482178 1201566..1202375 1 NC_015422.1 PFAM: Crotonase, core; KEGG: swi:Swit_0321 1,4-dihydroxy-2-naphthoate synthase; enoyl-CoA hydratase/isomerase 1202375 10482178 Alide2_1151 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387073.1 1201566 D 596154 CDS YP_004387074.1 330823771 10482179 1202384..1203550 1 NC_015422.1 PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1203550 10482179 Alide2_1152 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004387074.1 1202384 D 596154 CDS YP_004387075.1 330823772 10482180 1203559..1204704 1 NC_015422.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1204704 10482180 Alide2_1153 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004387075.1 1203559 D 596154 CDS YP_004387076.1 330823773 10482181 1204742..1205599 1 NC_015422.1 KEGG: gct:GC56T3_1469 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 1205599 10482181 Alide2_1154 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004387076.1 1204742 D 596154 CDS YP_004387077.1 330823774 10482184 complement(1206671..1208779) 1 NC_015422.1 KEGG: rme:Rmet_5110 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; 3-hydroxybutyryl-CoA epimerase 1208779 10482184 Alide2_1157 Alicycliphilus denitrificans K601 3-hydroxybutyryl-CoA epimerase YP_004387077.1 1206671 R 596154 CDS YP_004387078.1 330823775 10482185 1208869..1209642 1 NC_015422.1 PFAM: Crotonase, core; KEGG: swi:Swit_0344 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1209642 10482185 Alide2_1158 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387078.1 1208869 D 596154 CDS YP_004387079.1 330823776 10482186 complement(1209695..1210852) 1 NC_015422.1 KEGG: axy:AXYL_06648 thiolase, C-terminal domain-containing protein 10; thiolase, C-terminal domain-containing protein 10 1210852 10482186 Alide2_1159 Alicycliphilus denitrificans K601 thiolase, C-terminal domain-containing protein 10 YP_004387079.1 1209695 R 596154 CDS YP_004387080.1 330823777 10482187 complement(1210849..1211253) 1 NC_015422.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rpc:RPC_1073 hypothetical protein; hypothetical protein 1211253 10482187 Alide2_1160 Alicycliphilus denitrificans K601 hypothetical protein YP_004387080.1 1210849 R 596154 CDS YP_004387081.1 330823778 10482188 complement(1211250..1213403) 1 NC_015422.1 KEGG: reu:Reut_B4556 CoA-binding; PFAM: CoA-binding; SMART: CoA-binding; CoA-binding domain-containing protein 1213403 10482188 Alide2_1161 Alicycliphilus denitrificans K601 CoA-binding domain-containing protein YP_004387081.1 1211250 R 596154 CDS YP_004387082.1 330823779 10482189 1213574..1214740 1 NC_015422.1 KEGG: fal:FRAAL3384 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 1214740 10482189 Alide2_1162 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004387082.1 1213574 D 596154 CDS YP_004387083.1 330823780 10482190 1214757..1215533 1 NC_015422.1 PFAM: Crotonase, core; KEGG: bxe:Bxe_C0267 short chain enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1215533 10482190 Alide2_1163 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387083.1 1214757 D 596154 CDS YP_004387084.1 330823781 10482191 1215536..1216666 1 NC_015422.1 KEGG: vei:Veis_4266 hypothetical protein; hypothetical protein 1216666 10482191 Alide2_1164 Alicycliphilus denitrificans K601 hypothetical protein YP_004387084.1 1215536 D 596154 CDS YP_004387085.1 330823782 10482192 1216668..1217069 1 NC_015422.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: bbr:BB4332 hypothetical protein; hypothetical protein 1217069 10482192 Alide2_1165 Alicycliphilus denitrificans K601 hypothetical protein YP_004387085.1 1216668 D 596154 CDS YP_004387086.1 330823783 10482193 1217084..1218268 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: vap:Vapar_0843 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal; acetyl-CoA acetyltransferase 1218268 10482193 Alide2_1166 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004387086.1 1217084 D 596154 CDS YP_004387087.1 330823784 10482194 1218285..1219262 1 NC_015422.1 KEGG: vap:Vapar_1676 hypothetical protein; hypothetical protein 1219262 10482194 Alide2_1167 Alicycliphilus denitrificans K601 hypothetical protein YP_004387087.1 1218285 D 596154 CDS YP_004387088.1 330823785 10482195 1219309..1220058 1 NC_015422.1 KEGG: dia:Dtpsy_2299 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha/beta 1220058 10482195 Alide2_1168 Alicycliphilus denitrificans K601 electron transfer flavoprotein subunit alpha/beta YP_004387088.1 1219309 D 596154 CDS YP_004387089.1 330823786 10482196 1220073..1221005 1 NC_015422.1 KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha 1221005 10482196 Alide2_1169 Alicycliphilus denitrificans K601 electron transfer flavoprotein subunit alpha YP_004387089.1 1220073 D 596154 CDS YP_004387090.1 330823787 10482197 complement(1221313..1222428) 1 NC_015422.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: reh:H16_B0372 pimeloyl-CoA dehydrogenase (small subunit); acyl-CoA dehydrogenase domain-containing protein 1222428 10482197 Alide2_1170 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004387090.1 1221313 R 596154 CDS YP_004387091.1 330823788 10482198 complement(1222437..1223585) 1 NC_015422.1 KEGG: rme:Rmet_5530 acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; isovaleryl-CoA dehydrogenase 1223585 10482198 Alide2_1171 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004387091.1 1222437 R 596154 CDS YP_004387092.1 330823789 10482199 1223800..1224756 1 NC_015422.1 KEGG: vap:Vapar_5507 hypothetical protein; hypothetical protein 1224756 10482199 Alide2_1172 Alicycliphilus denitrificans K601 hypothetical protein YP_004387092.1 1223800 D 596154 CDS YP_004387093.1 330823790 10482201 complement(1225513..1225884) 1 NC_015422.1 PFAM: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3; KEGG: dia:Dtpsy_2561 protein of unknown function DUF498; hypothetical protein 1225884 10482201 Alide2_1173 Alicycliphilus denitrificans K601 hypothetical protein YP_004387093.1 1225513 R 596154 CDS YP_004387094.1 330823791 10482202 1226003..1227235 1 NC_015422.1 KEGG: dia:Dtpsy_2560 aminotransferase AlaT; PFAM: Aminotransferase, class I/classII; aspartate transaminase 1227235 10482202 Alide2_1174 Alicycliphilus denitrificans K601 aspartate transaminase YP_004387094.1 1226003 D 596154 CDS YP_004387095.1 330823792 10482203 1227307..1228641 1 NC_015422.1 KEGG: ajs:Ajs_3206 homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; Homoserine dehydrogenase 1228641 10482203 Alide2_1175 Alicycliphilus denitrificans K601 Homoserine dehydrogenase YP_004387095.1 1227307 D 596154 CDS YP_004387096.1 330823793 10482204 1228685..1228948 1 NC_015422.1 KEGG: bts:Btus_3191 prevent-host-death family protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein; prevent-host-death family protein 1228948 10482204 Alide2_1176 Alicycliphilus denitrificans K601 prevent-host-death family protein YP_004387096.1 1228685 D 596154 CDS YP_004387097.1 330823794 10482205 1228954..1229382 1 NC_015422.1 PFAM: PilT protein, N-terminal; KEGG: geo:Geob_1146 PilT protein domain protein; PilT protein domain-containing protein 1229382 10482205 Alide2_1177 Alicycliphilus denitrificans K601 PilT protein domain-containing protein YP_004387097.1 1228954 D 596154 CDS YP_004387098.1 330823795 10482206 1229393..1230823 1 NC_015422.1 TIGRFAM: Threonine synthase; KEGG: dia:Dtpsy_2558 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; threonine synthase 1230823 10482206 Alide2_1178 Alicycliphilus denitrificans K601 threonine synthase YP_004387098.1 1229393 D 596154 CDS YP_004387099.1 330823796 10482207 1230897..1231448 1 NC_015422.1 TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB), conserved domain; KEGG: dia:Dtpsy_2557 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein MobB 1231448 10482207 Alide2_1179 Alicycliphilus denitrificans K601 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_004387099.1 1230897 D 596154 CDS YP_004387100.1 330823797 10482208 1231445..1232692 1 NC_015422.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; MoeA, C-terminal, domain IV; Molybdopterin binding; KEGG: ajs:Ajs_3203 molybdenum cofactor synthesis domain-containing protein; SMART: Molybdopterin binding; molybdenum cofactor synthesis domain-containing protein 1232692 10482208 Alide2_1180 Alicycliphilus denitrificans K601 molybdenum cofactor synthesis domain-containing protein YP_004387100.1 1231445 D 596154 CDS YP_004387101.1 330823798 10482209 1232689..1232949 1 NC_015422.1 KEGG: dia:Dtpsy_2555 molybdopterin converting factor, subunit 1; TIGRFAM: Molybdopterin converting factor, subunit 1; PFAM: ThiamineS; molybdopterin converting factor subunit 1 1232949 10482209 Alide2_1181 Alicycliphilus denitrificans K601 molybdopterin converting factor subunit 1 YP_004387101.1 1232689 D 596154 CDS YP_004387102.1 330823799 10482210 complement(1232936..1233838) 1 NC_015422.1 TIGRFAM: Dihydrodipicolinate synthase subfamily; KEGG: dac:Daci_5213 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase 1233838 10482210 Alide2_1182 Alicycliphilus denitrificans K601 dihydrodipicolinate synthase YP_004387102.1 1232936 R 596154 CDS YP_004387103.1 330823800 10482211 complement(1234103..1234423) 1 NC_015422.1 KEGG: dia:Dtpsy_2554 hypothetical protein; hypothetical protein 1234423 10482211 Alide2_1183 Alicycliphilus denitrificans K601 hypothetical protein YP_004387103.1 1234103 R 596154 CDS YP_004387104.1 330823801 10482212 complement(1234497..1234640) 1 NC_015422.1 PFAM: Protein of unknown function DUF3149; KEGG: dia:Dtpsy_2553 hypothetical protein; hypothetical protein 1234640 10482212 Alide2_1184 Alicycliphilus denitrificans K601 hypothetical protein YP_004387104.1 1234497 R 596154 CDS YP_004387105.1 330823802 10482213 complement(1234753..1235007) 1 NC_015422.1 KEGG: dia:Dtpsy_2552 hypothetical protein; hypothetical protein 1235007 10482213 Alide2_1185 Alicycliphilus denitrificans K601 hypothetical protein YP_004387105.1 1234753 R 596154 CDS YP_004387106.1 330823803 10482214 1235064..1235540 1 NC_015422.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: ajs:Ajs_3199 molybdopterin synthase subunit MoaE; molybdopterin biosynthesis protein MoaE 1235540 10482214 Alide2_1186 Alicycliphilus denitrificans K601 molybdopterin biosynthesis protein MoaE YP_004387106.1 1235064 D 596154 CDS YP_004387107.1 330823804 10482215 1235608..1238211 1 NC_015422.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: dia:Dtpsy_2550 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core; ATP-dependent chaperone ClpB 1238211 10482215 Alide2_1187 Alicycliphilus denitrificans K601 ATP-dependent chaperone ClpB YP_004387107.1 1235608 D 596154 CDS YP_004387108.1 330823805 10482216 1238227..1238589 1 NC_015422.1 KEGG: dia:Dtpsy_2549 hypothetical protein; hypothetical protein 1238589 10482216 Alide2_1188 Alicycliphilus denitrificans K601 hypothetical protein YP_004387108.1 1238227 D 596154 CDS YP_004387109.1 330823806 10482217 1238709..1240169 1 NC_015422.1 KEGG: dia:Dtpsy_2547 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; coniferyl-aldehyde dehydrogenase 1240169 10482217 Alide2_1189 Alicycliphilus denitrificans K601 coniferyl-aldehyde dehydrogenase YP_004387109.1 1238709 D 596154 CDS YP_004387110.1 330823807 10482218 1240246..1240767 1 NC_015422.1 KEGG: dia:Dtpsy_2546 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; N-acetyltransferase GCN5 1240767 10482218 Alide2_1190 Alicycliphilus denitrificans K601 N-acetyltransferase GCN5 YP_004387110.1 1240246 D 596154 CDS YP_004387111.1 330823808 10482219 1240793..1241932 1 NC_015422.1 PFAM: Methyltransferase small; KEGG: aav:Aave_1253 methyltransferase small; methyltransferase small 1241932 10482219 Alide2_1191 Alicycliphilus denitrificans K601 methyltransferase small YP_004387111.1 1240793 D 596154 CDS YP_004387112.1 330823809 10482220 1241988..1243007 1 NC_015422.1 PFAM: tRNA-dihydrouridine synthase; KEGG: dia:Dtpsy_2544 dihydrouridine synthase DuS; dihydrouridine synthase DuS 1243007 10482220 Alide2_1192 Alicycliphilus denitrificans K601 dihydrouridine synthase DuS YP_004387112.1 1241988 D 596154 CDS YP_004387113.1 330823810 10482221 complement(1242967..1244577) 1 NC_015422.1 KEGG: dia:Dtpsy_2543 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 1244577 10482221 Alide2_1193 Alicycliphilus denitrificans K601 phospholipase D/transphosphatidylase YP_004387113.1 1242967 R 596154 CDS YP_004387114.1 330823811 10482222 complement(1244601..1245713) 1 NC_015422.1 TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: dia:Dtpsy_2542 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; riboflavin biosynthesis protein RibD 1245713 10482222 Alide2_1194 Alicycliphilus denitrificans K601 riboflavin biosynthesis protein RibD YP_004387114.1 1244601 R 596154 CDS YP_004387115.1 330823812 10482223 complement(1245751..1246185) 1 NC_015422.1 KEGG: dia:Dtpsy_2540 fimbrial protein pilin; fimbrial protein pilin 1246185 10482223 Alide2_1195 Alicycliphilus denitrificans K601 fimbrial protein pilin YP_004387115.1 1245751 R 596154 CDS YP_004387116.1 330823813 10482224 complement(1246196..1249933) 1 NC_015422.1 PFAM: PilC domain; KEGG: dac:Daci_5197 FG-GAP repeat-containing protein; PilC domain-containing protein 1249933 10482224 Alide2_1196 Alicycliphilus denitrificans K601 PilC domain-containing protein YP_004387116.1 1246196 R 596154 CDS YP_004387117.1 330823814 10482225 complement(1250025..1250774) 1 NC_015422.1 KEGG: dac:Daci_5196 hypothetical protein; hypothetical protein 1250774 10482225 Alide2_1197 Alicycliphilus denitrificans K601 hypothetical protein YP_004387117.1 1250025 R 596154 CDS YP_004387118.1 330823815 10482226 complement(1250786..1251661) 1 NC_015422.1 KEGG: dac:Daci_5195 hypothetical protein; hypothetical protein 1251661 10482226 Alide2_1198 Alicycliphilus denitrificans K601 hypothetical protein YP_004387118.1 1250786 R 596154 CDS YP_004387119.1 330823816 10482227 complement(1251664..1252305) 1 NC_015422.1 TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: dac:Daci_5194 type IV pilus modification protein PilV; type IV pilus modification protein PilV 1252305 10482227 Alide2_1199 Alicycliphilus denitrificans K601 type IV pilus modification protein PilV YP_004387119.1 1251664 R 596154 CDS YP_004387120.1 330823817 10482228 complement(1252312..1252818) 1 NC_015422.1 PFAM: General secretion pathway, GspH; KEGG: ajs:Ajs_3182 putative type-4 fimbrial pilin related signal peptide protein; general secretion pathway, GspH 1252818 10482228 Alide2_1200 Alicycliphilus denitrificans K601 general secretion pathway, GspH YP_004387120.1 1252312 R 596154 CDS YP_004387121.1 330823818 10482229 1253027..1254001 1 NC_015422.1 KEGG: ajs:Ajs_3180 adenosylcobinamide-phosphate synthase; TIGRFAM: Cobalamin biosynthesis CobD/CbiB; PFAM: Cobalamin biosynthesis CobD/CbiB; cobalamin biosynthesis protein CobD 1254001 10482229 Alide2_1201 Alicycliphilus denitrificans K601 cobalamin biosynthesis protein CobD YP_004387121.1 1253027 D 596154 CDS YP_004387122.1 330823819 10482230 1253994..1254980 1 NC_015422.1 KEGG: dia:Dtpsy_2532 aminotransferase class I and II; class I and II aminotransferase 1254980 10482230 Alide2_1202 Alicycliphilus denitrificans K601 class I and II aminotransferase YP_004387122.1 1253994 D 596154 CDS YP_004387123.1 330823820 10482231 1254977..1256449 1 NC_015422.1 TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: ajs:Ajs_3178 adenosylcobyric acid synthase (glutamine-hydrolysing); PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; cobyric acid synthase 1256449 10482231 Alide2_1203 Alicycliphilus denitrificans K601 cobyric acid synthase YP_004387123.1 1254977 D 596154 CDS YP_004387124.1 330823821 10482232 1256508..1257566 1 NC_015422.1 TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; KEGG: ajs:Ajs_3176 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1257566 10482232 Alide2_1204 Alicycliphilus denitrificans K601 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_004387124.1 1256508 D 596154 CDS YP_004387125.1 330823822 10482233 1257656..1258159 1 NC_015422.1 PFAM: Appr-1-p processing; KEGG: pag:PLES_35831 hypothetical protein; Appr-1-p processing protein 1258159 10482233 Alide2_1205 Alicycliphilus denitrificans K601 Appr-1-p processing protein YP_004387125.1 1257656 D 596154 CDS YP_004387126.1 330823823 10482234 complement(1258177..1258815) 1 NC_015422.1 SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Endonuclease III/Nth; KEGG: ajs:Ajs_3170 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD domain; Helix-hairpin-helix motif; Endonuclease III-like, iron-sulphur cluster loop motif; endonuclease III 1258815 10482234 Alide2_1206 Alicycliphilus denitrificans K601 endonuclease III YP_004387126.1 1258177 R 596154 CDS YP_004387127.1 330823824 10482235 complement(1258812..1259765) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2826 LysR family transcriptional regulator; LysR family transcriptional regulator 1259765 10482235 Alide2_1207 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387127.1 1258812 R 596154 CDS YP_004387128.1 330823825 10482236 1259876..1261339 1 NC_015422.1 PFAM: Amidase; KEGG: dac:Daci_2827 amidase; amidase 1261339 10482236 Alide2_1208 Alicycliphilus denitrificans K601 amidase YP_004387128.1 1259876 D 596154 CDS YP_004387129.1 330823826 10482237 1261375..1262361 1 NC_015422.1 KEGG: dac:Daci_2828 hypothetical protein; hypothetical protein 1262361 10482237 Alide2_1209 Alicycliphilus denitrificans K601 hypothetical protein YP_004387129.1 1261375 D 596154 CDS YP_004387130.1 330823827 10482238 complement(1262358..1262828) 1 NC_015422.1 KEGG: dac:Daci_3099 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding; transcription activator effector binding protein 1262828 10482238 Alide2_1210 Alicycliphilus denitrificans K601 transcription activator effector binding protein YP_004387130.1 1262358 R 596154 CDS YP_004387131.1 330823828 10482239 1262981..1264174 1 NC_015422.1 KEGG: aav:Aave_1563 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII; GntR family transcriptional regulator 1264174 10482239 Alide2_1211 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004387131.1 1262981 D 596154 CDS YP_004387132.1 330823829 10482240 1264176..1264376 1 NC_015422.1 PFAM: SlyX; KEGG: dia:Dtpsy_2515 SlyX family protein; SlyX family protein 1264376 10482240 Alide2_1212 Alicycliphilus denitrificans K601 SlyX family protein YP_004387132.1 1264176 D 596154 CDS YP_004387133.1 330823830 10482241 1264454..1265455 1 NC_015422.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ajs:Ajs_3167 aldo/keto reductase; NADP-dependent oxidoreductase domain-containing protein 1265455 10482241 Alide2_1213 Alicycliphilus denitrificans K601 NADP-dependent oxidoreductase domain-containing protein YP_004387133.1 1264454 D 596154 CDS YP_004387134.1 330823831 10482242 1265458..1265898 1 NC_015422.1 PFAM: Copper resistance D; KEGG: ajs:Ajs_3166 hypothetical protein; copper resistance D domain-containing protein 1265898 10482242 Alide2_1214 Alicycliphilus denitrificans K601 copper resistance D domain-containing protein YP_004387134.1 1265458 D 596154 CDS YP_004387135.1 330823832 10482243 1265898..1266122 1 NC_015422.1 KEGG: dia:Dtpsy_2512 hypothetical protein; hypothetical protein 1266122 10482243 Alide2_1215 Alicycliphilus denitrificans K601 hypothetical protein YP_004387135.1 1265898 D 596154 CDS YP_004387136.1 330823833 10482244 complement(1266119..1266490) 1 NC_015422.1 KEGG: aav:Aave_1570 globin-like protein; globin-like protein 1266490 10482244 Alide2_1216 Alicycliphilus denitrificans K601 globin-like protein YP_004387136.1 1266119 R 596154 CDS YP_004387137.1 330823834 10482245 complement(1266493..1267224) 1 NC_015422.1 KEGG: dia:Dtpsy_2511 hemerythrin HHE cation binding domain protein; TIGRFAM: Iron-sulfur cluster repair di-iron protein; PFAM: Domain of unknown function DUF542, ScdA N-terminal; Haemerythrin/HHE cation-binding motif; iron-sulfur cluster repair di-iron protein 1267224 10482245 Alide2_1217 Alicycliphilus denitrificans K601 iron-sulfur cluster repair di-iron protein YP_004387137.1 1266493 R 596154 CDS YP_004387138.1 330823835 10482246 1267310..1267801 1 NC_015422.1 KEGG: dia:Dtpsy_2510 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2; BadM/Rrf2 family transcriptional regulator 1267801 10482246 Alide2_1218 Alicycliphilus denitrificans K601 BadM/Rrf2 family transcriptional regulator YP_004387138.1 1267310 D 596154 CDS YP_004387139.1 330823836 10482247 1268102..1270024 1 NC_015422.1 KEGG: ctt:CtCNB1_1949 putative serine protein kinase, PrkA; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA; serine protein kinase PrkA 1270024 10482247 Alide2_1219 Alicycliphilus denitrificans K601 serine protein kinase PrkA YP_004387139.1 1268102 D 596154 CDS YP_004387140.1 330823837 10482248 1270069..1271337 1 NC_015422.1 KEGG: dac:Daci_2328 hypothetical protein; HAMAP: Uncharacterised protein family UPF0229; PFAM: Uncharacterised protein family UPF0229; hypothetical protein 1271337 10482248 Alide2_1220 Alicycliphilus denitrificans K601 hypothetical protein YP_004387140.1 1270069 D 596154 CDS YP_004387141.1 330823838 10482249 1271334..1272965 1 NC_015422.1 PFAM: Sporulation stage V, protein R; KEGG: dac:Daci_2329 SpoVR family protein; SpoVR family protein 1272965 10482249 Alide2_1221 Alicycliphilus denitrificans K601 SpoVR family protein YP_004387141.1 1271334 D 596154 CDS YP_004387142.1 330823839 10482250 complement(1273092..1273877) 1 NC_015422.1 KEGG: dia:Dtpsy_2507 lipoprotein, YaeC family; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein; lipoprotein 1273877 10482250 Alide2_1222 Alicycliphilus denitrificans K601 lipoprotein YP_004387142.1 1273092 R 596154 CDS YP_004387143.1 330823840 10482251 complement(1274014..1275078) 1 NC_015422.1 KEGG: ajs:Ajs_3313 histidine kinase internal region; PFAM: Signal transduction histidine kinase, internal region; SMART: ATPase-like, ATP-binding domain; integral membrane sensor signal transduction histidine kinase 1275078 10482251 Alide2_1223 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004387143.1 1274014 R 596154 CDS YP_004387144.1 330823841 10482252 1275129..1276589 1 NC_015422.1 TIGRFAM: Argininosuccinate lyase; KEGG: dia:Dtpsy_2664 argininosuccinate lyase; PFAM: Lyase 1, N-terminal; argininosuccinate lyase 1276589 10482252 Alide2_1224 Alicycliphilus denitrificans K601 argininosuccinate lyase YP_004387144.1 1275129 D 596154 CDS YP_004387145.1 330823842 10482253 1276607..1277581 1 NC_015422.1 KEGG: ajs:Ajs_3311 hypothetical protein; hypothetical protein 1277581 10482253 Alide2_1225 Alicycliphilus denitrificans K601 hypothetical protein YP_004387145.1 1276607 D 596154 CDS YP_004387146.1 330823843 10482254 1277713..1283649 1 NC_015422.1 PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; Alpha-2-macroglobulin; KEGG: dia:Dtpsy_2661 alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain-containing protein 1283649 10482254 Alide2_1226 Alicycliphilus denitrificans K601 alpha-2-macroglobulin domain-containing protein YP_004387146.1 1277713 D 596154 CDS YP_004387147.1 330823844 10482255 1283684..1284766 1 NC_015422.1 PFAM: Metallo-dependent phosphatase; KEGG: dac:Daci_4972 metallophosphoesterase; metallophosphoesterase 1284766 10482255 Alide2_1227 Alicycliphilus denitrificans K601 metallophosphoesterase YP_004387147.1 1283684 D 596154 CDS YP_004387148.1 330823845 10482256 complement(1284876..1285757) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2067 LysR family transcriptional regulator; LysR family transcriptional regulator 1285757 10482256 Alide2_1228 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387148.1 1284876 R 596154 CDS YP_004387149.1 330823846 10482257 1285890..1286882 1 NC_015422.1 KEGG: vap:Vapar_4821 hypothetical protein; hypothetical protein 1286882 10482257 Alide2_1229 Alicycliphilus denitrificans K601 hypothetical protein YP_004387149.1 1285890 D 596154 CDS YP_004387150.1 330823847 10482258 1286890..1287885 1 NC_015422.1 PFAM: Asparaginase/glutaminase; KEGG: axy:AXYL_04759 L-asparaginase 1; SMART: Asparaginase/glutaminase; asparaginase 1287885 10482258 Alide2_1230 Alicycliphilus denitrificans K601 asparaginase YP_004387150.1 1286890 D 596154 CDS YP_004387151.1 330823848 10482259 1287925..1289082 1 NC_015422.1 KEGG: rme:Rmet_5425 putative butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 1289082 10482259 Alide2_1231 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004387151.1 1287925 D 596154 CDS YP_004387152.1 330823849 10482260 1289082..1291181 1 NC_015422.1 KEGG: dac:Daci_1885 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding; CoA-binding domain-containing protein 1291181 10482260 Alide2_1232 Alicycliphilus denitrificans K601 CoA-binding domain-containing protein YP_004387152.1 1289082 D 596154 CDS YP_004387153.1 330823850 10482261 1291178..1292827 1 NC_015422.1 KEGG: gpb:HDN1F_16010 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; isovaleryl-CoA dehydrogenase 1292827 10482261 Alide2_1233 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004387153.1 1291178 D 596154 CDS YP_004387154.1 330823851 10482262 1292961..1294208 1 NC_015422.1 KEGG: bbr:BB0464 putative dehydratase/racemase; dehydratase/racemase 1294208 10482262 Alide2_1234 Alicycliphilus denitrificans K601 dehydratase/racemase YP_004387154.1 1292961 D 596154 CDS YP_004387155.1 330823852 10482263 1294533..1295414 1 NC_015422.1 KEGG: dia:Dtpsy_2653 hypothetical protein; hypothetical protein 1295414 10482263 Alide2_1235 Alicycliphilus denitrificans K601 hypothetical protein YP_004387155.1 1294533 D 596154 CDS YP_004387156.1 330823853 10482264 1295414..1297579 1 NC_015422.1 TIGRFAM: Penicillin-binding protein 1C; KEGG: ajs:Ajs_3299 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal; penicillin-binding protein 1C 1297579 10482264 Alide2_1236 Alicycliphilus denitrificans K601 penicillin-binding protein 1C YP_004387156.1 1295414 D 596154 CDS YP_004387157.1 330823854 10482265 1297644..1298165 1 NC_015422.1 KEGG: dac:Daci_3482 hypothetical protein; hypothetical protein 1298165 10482265 Alide2_1237 Alicycliphilus denitrificans K601 hypothetical protein YP_004387157.1 1297644 D 596154 CDS YP_004387158.1 330823855 10482266 1298186..1299418 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; KEGG: dac:Daci_3483 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; HAMP linker domain; diguanylate cyclase 1299418 10482266 Alide2_1238 Alicycliphilus denitrificans K601 diguanylate cyclase YP_004387158.1 1298186 D 596154 CDS YP_004387159.1 330823856 10482267 1299415..1299930 1 NC_015422.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dac:Daci_3484 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 1299930 10482267 Alide2_1239 Alicycliphilus denitrificans K601 OmpA/MotB domain-containing protein YP_004387159.1 1299415 D 596154 CDS YP_004387160.1 330823857 10482268 1300023..1301195 1 NC_015422.1 KEGG: ajs:Ajs_3298 (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent dehydrogenase; L-lactate dehydrogenase (cytochrome) 1301195 10482268 Alide2_1240 Alicycliphilus denitrificans K601 L-lactate dehydrogenase (cytochrome) YP_004387160.1 1300023 D 596154 CDS YP_004387161.1 330823858 10482269 1301368..1302300 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2650 hypothetical protein; hypothetical protein 1302300 10482269 Alide2_1241 Alicycliphilus denitrificans K601 hypothetical protein YP_004387161.1 1301368 D 596154 CDS YP_004387162.1 330823859 10482270 complement(1302313..1304151) 1 NC_015422.1 KEGG: bbr:BB0981 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; isovaleryl-CoA dehydrogenase 1304151 10482270 Alide2_1242 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004387162.1 1302313 R 596154 CDS YP_004387163.1 330823860 10482271 complement(1304188..1305414) 1 NC_015422.1 KEGG: bbr:BB0982 hypothetical protein; PFAM: CoA-transferase family III; formyl-CoA transferase 1305414 10482271 Alide2_1243 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387163.1 1304188 R 596154 CDS YP_004387164.1 330823861 10482272 complement(1305445..1306413) 1 NC_015422.1 KEGG: bbr:BB0983 hypothetical protein; hypothetical protein 1306413 10482272 Alide2_1244 Alicycliphilus denitrificans K601 hypothetical protein YP_004387164.1 1305445 R 596154 CDS YP_004387165.1 330823862 10482273 1306552..1307445 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bbr:BB0984 LysR family transcriptional regulator; LysR family transcriptional regulator 1307445 10482273 Alide2_1245 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387165.1 1306552 D 596154 CDS YP_004387166.1 330823863 10482274 1307521..1308714 1 NC_015422.1 KEGG: aav:Aave_1964 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; DNA-directed DNA polymerase 1308714 10482274 Alide2_1246 Alicycliphilus denitrificans K601 DNA-directed DNA polymerase YP_004387166.1 1307521 D 596154 CDS YP_004387167.1 330823864 10482275 1308876..1310438 1 NC_015422.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: dia:Dtpsy_2648 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; PAC motif; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer 1310438 10482275 Alide2_1247 Alicycliphilus denitrificans K601 Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer YP_004387167.1 1308876 D 596154 CDS YP_004387168.1 330823865 10482276 complement(1310468..1311313) 1 NC_015422.1 TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, YqcD; KEGG: ajs:Ajs_3294 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; 7-cyano-7-deazaguanine reductase 1311313 10482276 Alide2_1248 Alicycliphilus denitrificans K601 7-cyano-7-deazaguanine reductase YP_004387168.1 1310468 R 596154 CDS YP_004387169.1 330823866 10482277 complement(1311369..1312223) 1 NC_015422.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; procollagen-proline dioxygenase 1312223 10482277 Alide2_1249 Alicycliphilus denitrificans K601 procollagen-proline dioxygenase YP_004387169.1 1311369 R 596154 CDS YP_004387170.1 330823867 10482278 complement(1312220..1312993) 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0246; KEGG: dia:Dtpsy_2644 hypothetical protein; hypothetical protein 1312993 10482278 Alide2_1250 Alicycliphilus denitrificans K601 hypothetical protein YP_004387170.1 1312220 R 596154 CDS YP_004387171.1 330823868 10482279 complement(1313152..1316238) 1 NC_015422.1 TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: ajs:Ajs_3290 ribonuclease E; SMART: RNA-binding domain, S1; Rne/Rng family ribonuclease 1316238 10482279 Alide2_1251 Alicycliphilus denitrificans K601 Rne/Rng family ribonuclease YP_004387171.1 1313152 R 596154 CDS YP_004387172.1 330823869 10482280 1316828..1317847 1 NC_015422.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; Zinc finger, FLYWCH-type; KEGG: dia:Dtpsy_2642 pseudouridine synthase, RluA family; SMART: RNA-binding S4; RluA family pseudouridine synthase 1317847 10482280 Alide2_1252 Alicycliphilus denitrificans K601 RluA family pseudouridine synthase YP_004387172.1 1316828 D 596154 CDS YP_004387173.1 330823870 10482281 1317840..1318511 1 NC_015422.1 KEGG: dia:Dtpsy_2641 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase 1318511 10482281 Alide2_1253 Alicycliphilus denitrificans K601 HAD-superfamily hydrolase YP_004387173.1 1317840 D 596154 CDS YP_004387174.1 330823871 10482282 1318514..1318885 1 NC_015422.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: dia:Dtpsy_2640 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 1318885 10482282 Alide2_1254 Alicycliphilus denitrificans K601 Rieske (2Fe-2S) domain-containing protein YP_004387174.1 1318514 D 596154 CDS YP_004387175.1 330823872 10482283 1318890..1319930 1 NC_015422.1 PFAM: Peptidase S49; KEGG: dia:Dtpsy_2639 peptidase S49; peptidase S49 1319930 10482283 Alide2_1255 Alicycliphilus denitrificans K601 peptidase S49 YP_004387175.1 1318890 D 596154 CDS YP_004387176.1 330823873 10482284 complement(1319935..1320720) 1 NC_015422.1 PFAM: Tetrapyrrole methylase; KEGG: dia:Dtpsy_2638 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 1320720 10482284 Alide2_1256 Alicycliphilus denitrificans K601 uroporphyrin-III C/tetrapyrrole methyltransferase YP_004387176.1 1319935 R 596154 CDS YP_004387177.1 330823874 10482285 complement(1320717..1321316) 1 NC_015422.1 KEGG: dia:Dtpsy_2637 maf protein; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; maf protein 1321316 10482285 Alide2_1257 Alicycliphilus denitrificans K601 maf protein YP_004387177.1 1320717 R 596154 CDS YP_004387178.1 330823875 10482286 1321343..1321894 1 NC_015422.1 PFAM: Protein of unknown function DUF177; KEGG: dia:Dtpsy_2636 protein of unknown function DUF177; hypothetical protein 1321894 10482286 Alide2_1258 Alicycliphilus denitrificans K601 hypothetical protein YP_004387178.1 1321343 D 596154 CDS YP_004387179.1 330823876 10482287 1322031..1322213 1 NC_015422.1 KEGG: aav:Aave_1181 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; PFAM: Ribosomal protein L32p; 50S ribosomal protein L32 1322213 10482287 Alide2_1259 Alicycliphilus denitrificans K601 50S ribosomal protein L32 YP_004387179.1 1322031 D 596154 CDS YP_004387180.1 330823877 10482288 1322336..1323367 1 NC_015422.1 PFAM: Fatty acid synthesis PlsX protein; manually curated; TIGRFAM: Phospholipid biosynthesis protein, PlsX-like; KEGG: dia:Dtpsy_2634 putative glycerol-3-phosphate acyltransferase PlsX; HAMAP: Phospholipid biosynthesis protein, PlsX-like; phosphate acyltransferase 1323367 10482288 Alide2_1260 Alicycliphilus denitrificans K601 phosphate acyltransferase YP_004387180.1 1322336 D 596154 CDS YP_004387181.1 330823878 10482289 1323389..1324369 1 NC_015422.1 TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: dia:Dtpsy_2633 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase 1324369 10482289 Alide2_1261 Alicycliphilus denitrificans K601 3-oxoacyl-ACP synthase YP_004387181.1 1323389 D 596154 CDS YP_004387182.1 330823879 10482290 1324431..1325384 1 NC_015422.1 TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase 1325384 10482290 Alide2_1262 Alicycliphilus denitrificans K601 malonyl CoA-acyl carrier protein transacylase YP_004387182.1 1324431 D 596154 CDS YP_004387183.1 330823880 10482291 1325381..1326118 1 NC_015422.1 KEGG: dia:Dtpsy_2631 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 1326118 10482291 Alide2_1263 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004387183.1 1325381 D 596154 CDS YP_004387184.1 330823881 10482292 1326222..1326461 1 NC_015422.1 SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Acyl carrier protein (ACP); KEGG: ctt:CtCNB1_0973 acyl carrier protein; HAMAP: Acyl carrier protein (ACP); PFAM: Phosphopantetheine-binding; acyl carrier protein 1326461 10482292 Alide2_1264 Alicycliphilus denitrificans K601 acyl carrier protein YP_004387184.1 1326222 D 596154 CDS YP_004387185.1 330823882 10482293 1326520..1327764 1 NC_015422.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: dia:Dtpsy_2629 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; 3-oxoacyl-ACP synthase 1327764 10482293 Alide2_1265 Alicycliphilus denitrificans K601 3-oxoacyl-ACP synthase YP_004387185.1 1326520 D 596154 CDS YP_004387186.1 330823883 10482294 1327827..1328348 1 NC_015422.1 KEGG: dia:Dtpsy_2628 hypothetical protein; hypothetical protein 1328348 10482294 Alide2_1266 Alicycliphilus denitrificans K601 hypothetical protein YP_004387186.1 1327827 D 596154 CDS YP_004387187.1 330823884 10482295 1328345..1328980 1 NC_015422.1 KEGG: dia:Dtpsy_2627 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 subunit 1328980 10482295 Alide2_1267 Alicycliphilus denitrificans K601 ECF subfamily RNA polymerase sigma-24 subunit YP_004387187.1 1328345 D 596154 CDS YP_004387188.1 330823885 10482296 1329005..1329655 1 NC_015422.1 PFAM: Anti sigma-E protein RseA, N-terminal; KEGG: dia:Dtpsy_2626 anti sigma-E protein, RseA; anti sigma-E protein RseA family protein 1329655 10482296 Alide2_1268 Alicycliphilus denitrificans K601 anti sigma-E protein RseA family protein YP_004387188.1 1329005 D 596154 CDS YP_004387189.1 330823886 10482297 1329766..1330764 1 NC_015422.1 KEGG: dia:Dtpsy_2625 sigma E regulatory protein, MucB/RseB; manually curated; PFAM: MucB/RseB; sigma E regulatory protein MucB/RseB 1330764 10482297 Alide2_1269 Alicycliphilus denitrificans K601 sigma E regulatory protein MucB/RseB YP_004387189.1 1329766 D 596154 CDS YP_004387190.1 330823887 10482298 1330874..1332355 1 NC_015422.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: dia:Dtpsy_2624 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; protease Do 1332355 10482298 Alide2_1270 Alicycliphilus denitrificans K601 protease Do YP_004387190.1 1330874 D 596154 CDS YP_004387191.1 330823888 10482299 1332780..1334588 1 NC_015422.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; GTP-binding protein LepA, C-terminal; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: dia:Dtpsy_2623 GTP-binding protein LepA; SMART: Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein LepA 1334588 10482299 Alide2_1271 Alicycliphilus denitrificans K601 GTP-binding protein LepA YP_004387191.1 1332780 D 596154 CDS YP_004387192.1 330823889 10482300 1334595..1335569 1 NC_015422.1 KEGG: dia:Dtpsy_2622 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region; signal peptidase I 1335569 10482300 Alide2_1272 Alicycliphilus denitrificans K601 signal peptidase I YP_004387192.1 1334595 D 596154 CDS YP_004387193.1 330823890 10482301 1335577..1335948 1 NC_015422.1 KEGG: dia:Dtpsy_2621 putative transmembrane protein; transmembrane protein 1335948 10482301 Alide2_1273 Alicycliphilus denitrificans K601 transmembrane protein YP_004387193.1 1335577 D 596154 CDS YP_004387194.1 330823891 10482302 1335951..1336637 1 NC_015422.1 KEGG: ajs:Ajs_3267 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA-binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA-binding; ribonuclease 3 1336637 10482302 Alide2_1274 Alicycliphilus denitrificans K601 ribonuclease 3 YP_004387194.1 1335951 D 596154 CDS YP_004387195.1 330823892 10482303 1336706..1337647 1 NC_015422.1 KEGG: dia:Dtpsy_2619 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; GTP-binding protein Era 1337647 10482303 Alide2_1275 Alicycliphilus denitrificans K601 GTP-binding protein Era YP_004387195.1 1336706 D 596154 CDS YP_004387196.1 330823893 10482304 1337869..1338642 1 NC_015422.1 KEGG: ajs:Ajs_3265 DNA repair protein RecO; TIGRFAM: Recombination protein O, RecO; PFAM: DNA replication/recombination mediator RecO, N-terminal; Recombination protein O, RecO; DNA repair protein RecO 1338642 10482304 Alide2_1276 Alicycliphilus denitrificans K601 DNA repair protein RecO YP_004387196.1 1337869 D 596154 CDS YP_004387197.1 330823894 10482305 1338639..1339406 1 NC_015422.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: dia:Dtpsy_2616 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; pyridoxal phosphate biosynthetic protein PdxJ 1339406 10482305 Alide2_1277 Alicycliphilus denitrificans K601 pyridoxal phosphate biosynthetic protein PdxJ YP_004387197.1 1338639 D 596154 CDS YP_004387198.1 330823895 10482306 1339464..1339856 1 NC_015422.1 KEGG: dia:Dtpsy_2615 4'-phosphopantetheinyl transferase; TIGRFAM: Phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; PFAM: 4'-phosphopantetheinyl transferase; phosphopantetheine-protein transferase 1339856 10482306 Alide2_1278 Alicycliphilus denitrificans K601 phosphopantetheine-protein transferase YP_004387198.1 1339464 D 596154 CDS YP_004387199.1 330823896 10482307 1339921..1341003 1 NC_015422.1 PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: dia:Dtpsy_2614 beta-N-acetylhexosaminidase; glycoside hydrolase family protein 1341003 10482307 Alide2_1279 Alicycliphilus denitrificans K601 glycoside hydrolase family protein YP_004387199.1 1339921 D 596154 CDS YP_004387200.1 330823897 10482308 1341000..1342067 1 NC_015422.1 KEGG: ajs:Ajs_3260 6-phosphofructokinase; PFAM: Phosphofructokinase domain; 6-phosphofructokinase 1342067 10482308 Alide2_1280 Alicycliphilus denitrificans K601 6-phosphofructokinase YP_004387200.1 1341000 D 596154 CDS YP_004387201.1 330823898 10482309 complement(1342148..1342858) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2610 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 1342858 10482309 Alide2_1281 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004387201.1 1342148 R 596154 CDS YP_004387202.1 330823899 10482310 complement(1342858..1343631) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: xtr:100485612 putative ribose/galactose/methyl galactoside import ATP-binding protein-like; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase 1343631 10482310 Alide2_1282 Alicycliphilus denitrificans K601 sulfate-transporting ATPase YP_004387202.1 1342858 R 596154 CDS YP_004387203.1 330823900 10482311 complement(1343631..1344890) 1 NC_015422.1 PFAM: ABC transporter permease; High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal; KEGG: dia:Dtpsy_2608 leucine/isoleucine/valine transporter permease subunit; ABC transporter permease 1344890 10482311 Alide2_1283 Alicycliphilus denitrificans K601 ABC transporter permease YP_004387203.1 1343631 R 596154 CDS YP_004387204.1 330823901 10482312 complement(1344890..1345816) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2607 inner-membrane translocator; ABC transporter permease 1345816 10482312 Alide2_1284 Alicycliphilus denitrificans K601 ABC transporter permease YP_004387204.1 1344890 R 596154 CDS YP_004387205.1 330823902 10482313 complement(1345937..1347055) 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_4331 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1347055 10482313 Alide2_1285 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004387205.1 1345937 R 596154 CDS YP_004387206.1 330823903 10482314 complement(1347248..1347910) 1 NC_015422.1 PFAM: Mechanosensitive ion channel MscS; KEGG: ajs:Ajs_3252 small-conductance mechanosensitive channel-like protein; mechanosensitive ion channel protein MscS 1347910 10482314 Alide2_1286 Alicycliphilus denitrificans K601 mechanosensitive ion channel protein MscS YP_004387206.1 1347248 R 596154 CDS YP_004387207.1 330823904 10482315 complement(1347907..1349454) 1 NC_015422.1 TIGRFAM: Lysyl-tRNA synthetase, class II; KEGG: ajs:Ajs_3250 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; lysyl-tRNA synthetase 1349454 10482315 Alide2_1287 Alicycliphilus denitrificans K601 lysyl-tRNA synthetase YP_004387207.1 1347907 R 596154 CDS YP_004387208.1 330823905 10482316 complement(1349494..1350120) 1 NC_015422.1 PFAM: Bacterial sugar transferase; KEGG: lch:Lcho_0300 sugar transferase; sugar transferase 1350120 10482316 Alide2_1288 Alicycliphilus denitrificans K601 sugar transferase YP_004387208.1 1349494 R 596154 CDS YP_004387209.1 330823906 10482317 complement(1350127..1351299) 1 NC_015422.1 KEGG: mpt:Mpe_A0607 lipopolysaccharide biosynthesis protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase 1351299 10482317 Alide2_1289 Alicycliphilus denitrificans K601 glutamine--scyllo-inositol transaminase YP_004387209.1 1350127 R 596154 CDS YP_004387210.1 330823907 10482318 complement(1351296..1351991) 1 NC_015422.1 PFAM: Methyltransferase type 11; KEGG: mpt:Mpe_A0605 hypothetical protein; type 11 methyltransferase 1351991 10482318 Alide2_1290 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004387210.1 1351296 R 596154 CDS YP_004387211.1 330823908 10482319 complement(1351988..1353016) 1 NC_015422.1 PFAM: Glycosyl transferase, family 2; KEGG: bpt:Bpet1524 glycosyltransferase; family 2 glycosyl transferase 1353016 10482319 Alide2_1291 Alicycliphilus denitrificans K601 family 2 glycosyl transferase YP_004387211.1 1351988 R 596154 CDS YP_004387212.1 330823909 10482320 complement(1353013..1354062) 1 NC_015422.1 PFAM: Glycosyl transferase, group 1; KEGG: bpt:Bpet1525 glycosyltransferase; group 1 glycosyl transferase 1354062 10482320 Alide2_1292 Alicycliphilus denitrificans K601 group 1 glycosyl transferase YP_004387212.1 1353013 R 596154 CDS YP_004387213.1 330823910 10482321 complement(1354064..1354666) 1 NC_015422.1 KEGG: bpt:Bpet1526 acetyltransferase; acetyltransferase 1354666 10482321 Alide2_1293 Alicycliphilus denitrificans K601 acetyltransferase YP_004387213.1 1354064 R 596154 CDS YP_004387214.1 330823911 10482322 complement(1354650..1355882) 1 NC_015422.1 PFAM: Polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein; polysaccharide biosynthesis protein 1355882 10482322 Alide2_1294 Alicycliphilus denitrificans K601 polysaccharide biosynthesis protein YP_004387214.1 1354650 R 596154 CDS YP_004387215.1 330823912 10482323 complement(1355879..1357780) 1 NC_015422.1 PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: pol:Bpro_3983 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 1357780 10482323 Alide2_1295 Alicycliphilus denitrificans K601 polysaccharide biosynthesis protein CapD YP_004387215.1 1355879 R 596154 CDS YP_004387216.1 330823913 10482324 complement(1357817..1358452) 1 NC_015422.1 PFAM: Peptidase S16, lon N-terminal; KEGG: xtr:100498456 hypothetical protein LOC100498456; peptidase S16 lon domain-containing protein 1358452 10482324 Alide2_1296 Alicycliphilus denitrificans K601 peptidase S16 lon domain-containing protein YP_004387216.1 1357817 R 596154 CDS YP_004387217.1 330823914 10482325 1358546..1359094 1 NC_015422.1 PFAM: Uncharacterised protein family Ycf19; KEGG: dia:Dtpsy_2595 protein of unknown function YGGT; hypothetical protein 1359094 10482325 Alide2_1297 Alicycliphilus denitrificans K601 hypothetical protein YP_004387217.1 1358546 D 596154 CDS YP_004387218.1 330823915 10482326 complement(1359171..1360043) 1 NC_015422.1 TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; KEGG: ajs:Ajs_3241 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; PFAM: Carboxyl transferase; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1360043 10482326 Alide2_1298 Alicycliphilus denitrificans K601 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_004387218.1 1359171 R 596154 CDS YP_004387219.1 330823916 10482327 complement(1360072..1360881) 1 NC_015422.1 TIGRFAM: Tryptophan synthase, alpha chain; KEGG: ajs:Ajs_3240 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain; tryptophan synthase subunit alpha 1360881 10482327 Alide2_1299 Alicycliphilus denitrificans K601 tryptophan synthase subunit alpha YP_004387219.1 1360072 R 596154 CDS YP_004387220.1 330823917 10482328 complement(1360878..1362146) 1 NC_015422.1 TIGRFAM: Tryptophan synthase, beta chain; KEGG: ajs:Ajs_3239 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; tryptophan synthase subunit beta 1362146 10482328 Alide2_1300 Alicycliphilus denitrificans K601 tryptophan synthase subunit beta YP_004387220.1 1360878 R 596154 CDS YP_004387221.1 330823918 10482329 complement(1362147..1362863) 1 NC_015422.1 KEGG: ajs:Ajs_3238 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 1362863 10482329 Alide2_1301 Alicycliphilus denitrificans K601 phosphoribosylanthranilate isomerase YP_004387221.1 1362147 R 596154 CDS YP_004387222.1 330823919 10482330 complement(1362860..1363678) 1 NC_015422.1 KEGG: dia:Dtpsy_2590 tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase A 1363678 10482330 Alide2_1302 Alicycliphilus denitrificans K601 tRNA pseudouridine synthase A YP_004387222.1 1362860 R 596154 CDS YP_004387223.1 330823920 10482331 complement(1363743..1366415) 1 NC_015422.1 TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: ajs:Ajs_3236 putative transmembrane protein; FimV N-terminal domain-containing protein 1366415 10482331 Alide2_1303 Alicycliphilus denitrificans K601 FimV N-terminal domain-containing protein YP_004387223.1 1363743 R 596154 CDS YP_004387224.1 330823921 10482332 complement(1366638..1367750) 1 NC_015422.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, proteobacteria; KEGG: ctt:CtCNB1_1004 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; aspartate-semialdehyde dehydrogenase 1367750 10482332 Alide2_1304 Alicycliphilus denitrificans K601 aspartate-semialdehyde dehydrogenase YP_004387224.1 1366638 R 596154 CDS YP_004387225.1 330823922 10482333 complement(1368020..1369090) 1 NC_015422.1 TIGRFAM: Isopropylmalate dehydrogenase; KEGG: dia:Dtpsy_2586 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 1369090 10482333 Alide2_1305 Alicycliphilus denitrificans K601 3-isopropylmalate dehydrogenase YP_004387225.1 1368020 R 596154 CDS YP_004387226.1 330823923 10482334 complement(1369165..1369815) 1 NC_015422.1 KEGG: dia:Dtpsy_2585 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; 3-isopropylmalate dehydratase small subunit 1369815 10482334 Alide2_1306 Alicycliphilus denitrificans K601 3-isopropylmalate dehydratase small subunit YP_004387226.1 1369165 R 596154 CDS YP_004387227.1 330823924 10482335 complement(1369839..1369964) 1 NC_015422.1 PFAM: Entericidin EcnAB; KEGG: dac:Daci_5236 entericidin EcnAB; entericidin EcnAB 1369964 10482335 Alide2_1307 Alicycliphilus denitrificans K601 entericidin EcnAB YP_004387227.1 1369839 R 596154 CDS YP_004387228.1 330823925 10482336 complement(1369988..1371409) 1 NC_015422.1 KEGG: ajs:Ajs_3229 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; 3-isopropylmalate dehydratase large subunit 1371409 10482336 Alide2_1308 Alicycliphilus denitrificans K601 3-isopropylmalate dehydratase large subunit YP_004387228.1 1369988 R 596154 CDS YP_004387229.1 330823926 10482337 complement(1371430..1372368) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_2581 transcriptional regulator, LysR family; LysR family transcriptional regulator 1372368 10482337 Alide2_1309 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387229.1 1371430 R 596154 CDS YP_004387230.1 330823927 10482338 complement(1372557..1373921) 1 NC_015422.1 KEGG: dia:Dtpsy_2580 beta-lactamase domain protein; PFAM: Beta-Casp domain; RNA-metabolising metallo-beta-lactamase; Beta-lactamase-like; SMART: Beta-lactamase-like; beta-Casp domain-containing protein 1373921 10482338 Alide2_1310 Alicycliphilus denitrificans K601 beta-Casp domain-containing protein YP_004387230.1 1372557 R 596154 CDS YP_004387231.1 330823928 10482339 complement(1373962..1375110) 1 NC_015422.1 PFAM: Cytochrome P450; KEGG: ajs:Ajs_3226 cytochrome P450; cytochrome P450 1375110 10482339 Alide2_1311 Alicycliphilus denitrificans K601 cytochrome P450 YP_004387231.1 1373962 R 596154 CDS YP_004387232.1 330823929 10482340 complement(1375129..1376613) 1 NC_015422.1 KEGG: ajs:Ajs_3225 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related; UbiD family decarboxylase 1376613 10482340 Alide2_1312 Alicycliphilus denitrificans K601 UbiD family decarboxylase YP_004387232.1 1375129 R 596154 CDS YP_004387233.1 330823930 10482341 complement(1376669..1377253) 1 NC_015422.1 KEGG: dia:Dtpsy_2577 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1377253 10482341 Alide2_1313 Alicycliphilus denitrificans K601 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_004387233.1 1376669 R 596154 CDS YP_004387234.1 330823931 10482342 complement(1377250..1377657) 1 NC_015422.1 PFAM: DGC; KEGG: ajs:Ajs_3223 hypothetical protein; DGC domain-containing protein 1377657 10482342 Alide2_1314 Alicycliphilus denitrificans K601 DGC domain-containing protein YP_004387234.1 1377250 R 596154 CDS YP_004387235.1 330823932 10482343 complement(1377654..1378172) 1 NC_015422.1 PFAM: SCP2 sterol-binding domain; KEGG: ajs:Ajs_3222 hypothetical protein; Sterol-binding domain-containing protein 1378172 10482343 Alide2_1315 Alicycliphilus denitrificans K601 Sterol-binding domain-containing protein YP_004387235.1 1377654 R 596154 CDS YP_004387236.1 330823933 10482344 complement(1378192..1379115) 1 NC_015422.1 PFAM: Peptidase U32; KEGG: ajs:Ajs_3221 peptidase U32; peptidase U32 1379115 10482344 Alide2_1316 Alicycliphilus denitrificans K601 peptidase U32 YP_004387236.1 1378192 R 596154 CDS YP_004387237.1 330823934 10482345 complement(1379121..1380242) 1 NC_015422.1 PFAM: Peptidase U32; KEGG: ajs:Ajs_3220 peptidase U32; peptidase U32 1380242 10482345 Alide2_1317 Alicycliphilus denitrificans K601 peptidase U32 YP_004387237.1 1379121 R 596154 CDS YP_004387238.1 330823935 10482346 1380441..1381811 1 NC_015422.1 KEGG: rfr:Rfer_2475 tryptophanase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; tryptophanase 1381811 10482346 Alide2_1318 Alicycliphilus denitrificans K601 tryptophanase YP_004387238.1 1380441 D 596154 CDS YP_004387239.1 330823936 10482347 complement(1381885..1382550) 1 NC_015422.1 KEGG: maq:Maqu_1010 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein 1382550 10482347 Alide2_1319 Alicycliphilus denitrificans K601 PEP motif putative anchor domain-containing protein YP_004387239.1 1381885 R 596154 CDS YP_004387240.1 330823937 10482348 complement(1382765..1383898) 1 NC_015422.1 TIGRFAM: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, cysteine-rich domain; Heat shock protein DnaJ, N-terminal; KEGG: dia:Dtpsy_2572 chaperone protein DnaJ; SMART: Heat shock protein DnaJ, N-terminal; chaperone protein DnaJ 1383898 10482348 Alide2_1320 Alicycliphilus denitrificans K601 chaperone protein DnaJ YP_004387240.1 1382765 R 596154 CDS YP_004387241.1 330823938 10482349 complement(1383994..1385937) 1 NC_015422.1 KEGG: dia:Dtpsy_2571 molecular chaperone DnaK; TIGRFAM: Chaperone DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK 1385937 10482349 Alide2_1321 Alicycliphilus denitrificans K601 chaperone protein DnaK YP_004387241.1 1383994 R 596154 CDS YP_004387242.1 330823939 10482350 complement(1386030..1386572) 1 NC_015422.1 PFAM: GrpE nucleotide exchange factor; KEGG: dia:Dtpsy_2570 heat shock protein GrpE; GrpE protein HSP-70 cofactor 1386572 10482350 Alide2_1322 Alicycliphilus denitrificans K601 GrpE protein HSP-70 cofactor YP_004387242.1 1386030 R 596154 CDS YP_004387243.1 330823940 10482351 1386808..1387182 1 NC_015422.1 KEGG: dia:Dtpsy_2569 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; PFAM: Ribosomal protein S6; 30S ribosomal protein S6 1387182 10482351 Alide2_1323 Alicycliphilus denitrificans K601 30S ribosomal protein S6 YP_004387243.1 1386808 D 596154 CDS YP_004387244.1 330823941 10482352 1387205..1387495 1 NC_015422.1 PFAM: Primosome PriB/single-strand DNA-binding; KEGG: dia:Dtpsy_2568 putative primosomal replication protein; ssDNA-binding protein 1387495 10482352 Alide2_1324 Alicycliphilus denitrificans K601 ssDNA-binding protein YP_004387244.1 1387205 D 596154 CDS YP_004387245.1 330823942 10482353 1387514..1387795 1 NC_015422.1 TIGRFAM: Ribosomal protein S18; HAMAP: Ribosomal protein S18; KEGG: aav:Aave_1230 30S ribosomal protein S18; PFAM: Ribosomal protein S18; 30S ribosomal protein S18 1387795 10482353 Alide2_1325 Alicycliphilus denitrificans K601 30S ribosomal protein S18 YP_004387245.1 1387514 D 596154 CDS YP_004387246.1 330823943 10482354 1387810..1388262 1 NC_015422.1 KEGG: dia:Dtpsy_2566 50S ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal; 50S ribosomal protein L9 1388262 10482354 Alide2_1326 Alicycliphilus denitrificans K601 50S ribosomal protein L9 YP_004387246.1 1387810 D 596154 CDS YP_004387247.1 330823944 10482355 1388384..1389862 1 NC_015422.1 TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: dia:Dtpsy_2565 replicative DNA helicase; SMART: ATPase, AAA+ type, core; replicative DNA helicase 1389862 10482355 Alide2_1327 Alicycliphilus denitrificans K601 replicative DNA helicase YP_004387247.1 1388384 D 596154 CDS YP_004387248.1 330823945 10482356 1389933..1391465 1 NC_015422.1 KEGG: bpd:BURPS668_A2080 putative piperideine-6-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase domain; L-aminoadipate-semialdehyde dehydrogenase 1391465 10482356 Alide2_1328 Alicycliphilus denitrificans K601 L-aminoadipate-semialdehyde dehydrogenase YP_004387248.1 1389933 D 596154 CDS YP_004387249.1 330823946 10482357 complement(1391537..1393276) 1 NC_015422.1 KEGG: dia:Dtpsy_2563 PhoH family protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc; PhoH family protein 1393276 10482357 Alide2_1329 Alicycliphilus denitrificans K601 PhoH family protein YP_004387249.1 1391537 R 596154 CDS YP_004387250.1 330823947 10482358 complement(1393433..1393921) 1 NC_015422.1 PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: dia:Dtpsy_2562 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 1393921 10482358 Alide2_1330 Alicycliphilus denitrificans K601 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_004387250.1 1393433 R 596154 CDS YP_004387251.1 330823948 10482359 complement(1394099..1394788) 1 NC_015422.1 KEGG: ajs:Ajs_1106 hypothetical protein; hypothetical protein 1394788 10482359 Alide2_1331 Alicycliphilus denitrificans K601 hypothetical protein YP_004387251.1 1394099 R 596154 CDS YP_004387252.1 330823949 10482360 1395046..1395633 1 NC_015422.1 PFAM: Cytochrome b/b6, N-terminal; KEGG: dia:Dtpsy_1026 cytochrome b561; cytochrome b/b6 domain-containing protein 1395633 10482360 Alide2_1332 Alicycliphilus denitrificans K601 cytochrome b/b6 domain-containing protein YP_004387252.1 1395046 D 596154 CDS YP_004387253.1 330823950 10482361 1395630..1396250 1 NC_015422.1 KEGG: dia:Dtpsy_1027 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like; hypothetical protein 1396250 10482361 Alide2_1333 Alicycliphilus denitrificans K601 hypothetical protein YP_004387253.1 1395630 D 596154 CDS YP_004387254.1 330823951 10482362 1396305..1396880 1 NC_015422.1 KEGG: dia:Dtpsy_1028 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like; hypothetical protein 1396880 10482362 Alide2_1334 Alicycliphilus denitrificans K601 hypothetical protein YP_004387254.1 1396305 D 596154 CDS YP_004387255.1 330823952 10482363 complement(1396950..1399259) 1 NC_015422.1 PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: ajs:Ajs_1112 malic enzyme; SMART: Malic enzyme, NAD-binding; malate dehydrogenase 1399259 10482363 Alide2_1335 Alicycliphilus denitrificans K601 malate dehydrogenase YP_004387255.1 1396950 R 596154 CDS YP_004387256.1 330823953 10482364 complement(1399397..1400884) 1 NC_015422.1 KEGG: dac:Daci_2107 xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease; xanthine permease 1400884 10482364 Alide2_1336 Alicycliphilus denitrificans K601 xanthine permease YP_004387256.1 1399397 R 596154 CDS YP_004387257.1 330823954 10482365 1401235..1402710 1 NC_015422.1 KEGG: dia:Dtpsy_2395 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; methyl-accepting chemotaxis sensory transducer 1402710 10482365 Alide2_1337 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004387257.1 1401235 D 596154 CDS YP_004387258.1 330823955 10482367 complement(1403899..1405152) 1 NC_015422.1 PFAM: Peptidase M20, dimerisation; Peptidase M20; KEGG: dia:Dtpsy_1035 peptidase dimerisation domain protein; peptidase dimerization domain-containing protein 1405152 10482367 Alide2_1339 Alicycliphilus denitrificans K601 peptidase dimerization domain-containing protein YP_004387258.1 1403899 R 596154 CDS YP_004387259.1 330823956 10482368 complement(1405149..1406924) 1 NC_015422.1 TIGRFAM: Amidase, hydantoinase/carbamoylase; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1; KEGG: ajs:Ajs_1115 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Peptidase M20; hydantoinase/carbamoylase family amidase 1406924 10482368 Alide2_1340 Alicycliphilus denitrificans K601 hydantoinase/carbamoylase family amidase YP_004387259.1 1405149 R 596154 CDS YP_004387260.1 330823957 10482369 complement(1406989..1407948) 1 NC_015422.1 TIGRFAM: Putative urate catabolism protein; KEGG: dia:Dtpsy_1037 urate catabolism protein; PFAM: Polysaccharide deacetylase; urate catabolism protein 1407948 10482369 Alide2_1341 Alicycliphilus denitrificans K601 urate catabolism protein YP_004387260.1 1406989 R 596154 CDS YP_004387261.1 330823958 10482370 complement(1407945..1408622) 1 NC_015422.1 KEGG: dia:Dtpsy_1038 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; GntR family transcriptional regulator 1408622 10482370 Alide2_1342 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004387261.1 1407945 R 596154 CDS YP_004387262.1 330823959 10482371 complement(1408677..1409591) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1039 transcriptional regulator, LysR family; LysR family transcriptional regulator 1409591 10482371 Alide2_1343 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387262.1 1408677 R 596154 CDS YP_004387263.1 330823960 10482372 1409718..1410785 1 NC_015422.1 TIGRFAM: Tartrate dehydrogenase; KEGG: ajs:Ajs_1120 tartrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1410785 10482372 Alide2_1344 Alicycliphilus denitrificans K601 tartrate dehydrogenase YP_004387263.1 1409718 D 596154 CDS YP_004387264.1 330823961 10482373 1410820..1411803 1 NC_015422.1 KEGG: dia:Dtpsy_1041 hypothetical protein; hypothetical protein 1411803 10482373 Alide2_1345 Alicycliphilus denitrificans K601 hypothetical protein YP_004387264.1 1410820 D 596154 CDS YP_004387265.1 330823962 10482374 1411882..1413204 1 NC_015422.1 KEGG: ajs:Ajs_1122 hydroxypyruvate reductase; PFAM: MOFRL domain; hydroxypyruvate reductase 1413204 10482374 Alide2_1346 Alicycliphilus denitrificans K601 hydroxypyruvate reductase YP_004387265.1 1411882 D 596154 CDS YP_004387266.1 330823963 10482375 complement(1413232..1414125) 1 NC_015422.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: axy:AXYL_05357 LysR family regulatory helix-turn-helix protein 171; LysR family transcriptional regulator 1414125 10482375 Alide2_1347 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387266.1 1413232 R 596154 CDS YP_004387267.1 330823964 10482376 1414323..1415651 1 NC_015422.1 KEGG: axy:AXYL_05358 2,2-dialkylglycine decarboxylase; PFAM: Aminotransferase class-III; 2,2-dialkylglycine decarboxylase 1415651 10482376 Alide2_1348 Alicycliphilus denitrificans K601 2,2-dialkylglycine decarboxylase YP_004387267.1 1414323 D 596154 CDS YP_004387268.1 330823965 10482377 1415703..1416593 1 NC_015422.1 KEGG: lch:Lcho_4024 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 1416593 10482377 Alide2_1349 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004387268.1 1415703 D 596154 CDS YP_004387269.1 330823966 10482378 complement(1416672..1417601) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2116 LysR family transcriptional regulator; LysR family transcriptional regulator 1417601 10482378 Alide2_1350 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387269.1 1416672 R 596154 CDS YP_004387270.1 330823967 10482379 1417712..1419502 1 NC_015422.1 TIGRFAM: Glyoxylate carboligase; KEGG: dac:Daci_2117 glyoxylate carboligase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; glyoxylate carboligase 1419502 10482379 Alide2_1351 Alicycliphilus denitrificans K601 glyoxylate carboligase YP_004387270.1 1417712 D 596154 CDS YP_004387271.1 330823968 10482380 1419532..1420332 1 NC_015422.1 TIGRFAM: Hydroxypyruvate isomerase; KEGG: ctt:CtCNB1_3709 xylose isomerase-like TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; hydroxypyruvate isomerase 1420332 10482380 Alide2_1352 Alicycliphilus denitrificans K601 hydroxypyruvate isomerase YP_004387271.1 1419532 D 596154 CDS YP_004387272.1 330823969 10482381 1420380..1421294 1 NC_015422.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: dac:Daci_2119 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 1421294 10482381 Alide2_1353 Alicycliphilus denitrificans K601 2-hydroxy-3-oxopropionate reductase YP_004387272.1 1420380 D 596154 CDS YP_004387273.1 330823970 10482383 1421787..1422332 1 NC_015422.1 KEGG: dac:Daci_0940 hypothetical protein; hypothetical protein 1422332 10482383 Alide2_1355 Alicycliphilus denitrificans K601 hypothetical protein YP_004387273.1 1421787 D 596154 CDS YP_004387274.1 330823971 10482384 complement(1422329..1424119) 1 NC_015422.1 TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: dac:Daci_2120 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1424119 10482384 Alide2_1356 Alicycliphilus denitrificans K601 gamma-glutamyltransferase YP_004387274.1 1422329 R 596154 CDS YP_004387275.1 330823972 10482385 1424262..1424612 1 NC_015422.1 TIGRFAM: Hydroxyisourate hydrolase; KEGG: dia:Dtpsy_1043 hydroxyisourate hydrolase; PFAM: Transthyretin/hydroxyisourate hydrolase; hydroxyisourate hydrolase 1424612 10482385 Alide2_1357 Alicycliphilus denitrificans K601 hydroxyisourate hydrolase YP_004387275.1 1424262 D 596154 CDS YP_004387276.1 330823973 10482386 complement(1424771..1425298) 1 NC_015422.1 KEGG: dia:Dtpsy_1044 hypothetical protein; hypothetical protein 1425298 10482386 Alide2_1358 Alicycliphilus denitrificans K601 hypothetical protein YP_004387276.1 1424771 R 596154 CDS YP_004387277.1 330823974 10482387 1425361..1426194 1 NC_015422.1 TIGRFAM: Xanthine dehydrogenase accessory protein XdhC; KEGG: ajs:Ajs_1125 hypothetical protein; xanthine dehydrogenase accessory protein XdhC 1426194 10482387 Alide2_1359 Alicycliphilus denitrificans K601 xanthine dehydrogenase accessory protein XdhC YP_004387277.1 1425361 D 596154 CDS YP_004387278.1 330823975 10482388 1426476..1427693 1 NC_015422.1 PFAM: Protein of unknown function DUF989; KEGG: ajs:Ajs_1128 hypothetical protein; hypothetical protein 1427693 10482388 Alide2_1360 Alicycliphilus denitrificans K601 hypothetical protein YP_004387278.1 1426476 D 596154 CDS YP_004387279.1 330823976 10482389 1427811..1428377 1 NC_015422.1 TIGRFAM: Deoxycytidine triphosphate deaminase; KEGG: dia:Dtpsy_1050 deoxycytidine triphosphate deaminase; PFAM: DeoxyUTP pyrophosphatase domain; deoxycytidine triphosphate deaminase 1428377 10482389 Alide2_1361 Alicycliphilus denitrificans K601 deoxycytidine triphosphate deaminase YP_004387279.1 1427811 D 596154 CDS YP_004387280.1 330823977 10482390 1428442..1429305 1 NC_015422.1 PFAM: Uncharacterised protein family, zinc metallopeptidase putative; KEGG: dia:Dtpsy_1052 protein of unknown function zinc metallopeptidase putative; hypothetical protein 1429305 10482390 Alide2_1362 Alicycliphilus denitrificans K601 hypothetical protein YP_004387280.1 1428442 D 596154 CDS YP_004387281.1 330823978 10482391 1429394..1430836 1 NC_015422.1 KEGG: dia:Dtpsy_1053 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase 1430836 10482391 Alide2_1363 Alicycliphilus denitrificans K601 DEAD/DEAH box helicase YP_004387281.1 1429394 D 596154 CDS YP_004387282.1 330823979 10482392 complement(1430937..1431551) 1 NC_015422.1 PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: dia:Dtpsy_1054 hypothetical protein; NosL family protein 1431551 10482392 Alide2_1364 Alicycliphilus denitrificans K601 NosL family protein YP_004387282.1 1430937 R 596154 CDS YP_004387283.1 330823980 10482393 complement(1431603..1432139) 1 NC_015422.1 PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: dia:Dtpsy_1055 NosL family protein; NosL family protein 1432139 10482393 Alide2_1365 Alicycliphilus denitrificans K601 NosL family protein YP_004387283.1 1431603 R 596154 CDS YP_004387284.1 330823981 10482394 complement(1432136..1432951) 1 NC_015422.1 KEGG: dia:Dtpsy_1056 ABC-2 type transporter; ABC transporter 1432951 10482394 Alide2_1366 Alicycliphilus denitrificans K601 ABC transporter YP_004387284.1 1432136 R 596154 CDS YP_004387285.1 330823982 10482395 complement(1432967..1433899) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1057 ABC transporter related; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase 1433899 10482395 Alide2_1367 Alicycliphilus denitrificans K601 sulfate-transporting ATPase YP_004387285.1 1432967 R 596154 CDS YP_004387286.1 330823983 10482396 complement(1433874..1435142) 1 NC_015422.1 TIGRFAM: Parallel beta-helix repeat-2; PFAM: Periplasmic copper-binding; Domain of unknown function DUF1565; KEGG: dia:Dtpsy_1058 periplasmic copper-binding; SMART: Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat; parallel beta-helix repeat-containing protein 1435142 10482396 Alide2_1368 Alicycliphilus denitrificans K601 parallel beta-helix repeat-containing protein YP_004387286.1 1433874 R 596154 CDS YP_004387287.1 330823984 10482397 complement(1435139..1437760) 1 NC_015422.1 KEGG: dia:Dtpsy_1059 FMN-binding domain protein; PFAM: FMN-binding; SMART: FMN-binding; nitrous oxide expression regulator NosR 1437760 10482397 Alide2_1369 Alicycliphilus denitrificans K601 nitrous oxide expression regulator NosR YP_004387287.1 1435139 R 596154 CDS YP_004387288.1 330823985 10482398 complement(1437824..1439758) 1 NC_015422.1 KEGG: ajs:Ajs_1139 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal; nitrous-oxide reductase 1439758 10482398 Alide2_1370 Alicycliphilus denitrificans K601 nitrous-oxide reductase YP_004387288.1 1437824 R 596154 CDS YP_004387289.1 330823986 10482399 complement(1439780..1440139) 1 NC_015422.1 KEGG: dia:Dtpsy_1061 hypothetical protein; hypothetical protein 1440139 10482399 Alide2_1371 Alicycliphilus denitrificans K601 hypothetical protein YP_004387289.1 1439780 R 596154 CDS YP_004387290.1 330823987 10482400 1440367..1440780 1 NC_015422.1 PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_1062 cytochrome c class I; cytochrome c class I 1440780 10482400 Alide2_1372 Alicycliphilus denitrificans K601 cytochrome c class I YP_004387290.1 1440367 D 596154 CDS YP_004387291.1 330823988 10482401 1440800..1441840 1 NC_015422.1 PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: dia:Dtpsy_1063 ApbE family lipoprotein; ApbE family lipoprotein 1441840 10482401 Alide2_1373 Alicycliphilus denitrificans K601 ApbE family lipoprotein YP_004387291.1 1440800 D 596154 CDS YP_004387292.1 330823989 10482402 complement(1441942..1442787) 1 NC_015422.1 TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: dia:Dtpsy_1064 diadenosine tetraphosphatase; PFAM: Metallo-dependent phosphatase; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1442787 10482402 Alide2_1374 Alicycliphilus denitrificans K601 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YP_004387292.1 1441942 R 596154 CDS YP_004387293.1 330823990 10482403 1443102..1443398 1 NC_015422.1 PFAM: Histone-like nucleoid-structuring protein H-NS; KEGG: dia:Dtpsy_1065 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 1443398 10482403 Alide2_1375 Alicycliphilus denitrificans K601 histone family protein nucleoid-structuring protein H-NS YP_004387293.1 1443102 D 596154 CDS YP_004387294.1 330823991 10482404 1443671..1446577 1 NC_015422.1 TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: ajs:Ajs_1145 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; aconitate hydratase 1 1446577 10482404 Alide2_1376 Alicycliphilus denitrificans K601 aconitate hydratase 1 YP_004387294.1 1443671 D 596154 CDS YP_004387295.1 330823992 10482405 1446600..1447820 1 NC_015422.1 PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_1146 monooxygenase, FAD-binding; FAD dependent oxidoreductase 1447820 10482405 Alide2_1377 Alicycliphilus denitrificans K601 FAD dependent oxidoreductase YP_004387295.1 1446600 D 596154 CDS YP_004387296.1 330823993 10482406 complement(1447872..1449110) 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1068 major facilitator superfamily MFS_1; major facilitator superfamily protein 1449110 10482406 Alide2_1378 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004387296.1 1447872 R 596154 CDS YP_004387297.1 330823994 10482407 complement(1449136..1450341) 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bpe:BP2600 hypothetical protein; major facilitator superfamily protein 1450341 10482407 Alide2_1379 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004387297.1 1449136 R 596154 CDS YP_004387298.1 330823995 10482408 complement(1450518..1451324) 1 NC_015422.1 KEGG: dia:Dtpsy_1069 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; LytTR family two component transcriptional regulator 1451324 10482408 Alide2_1380 Alicycliphilus denitrificans K601 LytTR family two component transcriptional regulator YP_004387298.1 1450518 R 596154 CDS YP_004387299.1 330823996 10482409 complement(1451293..1452348) 1 NC_015422.1 PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; KEGG: vei:Veis_2283 signal transduction histidine kinase, LytS; signal transduction histidine kinase LytS 1452348 10482409 Alide2_1381 Alicycliphilus denitrificans K601 signal transduction histidine kinase LytS YP_004387299.1 1451293 R 596154 CDS YP_004387300.1 330823997 10482410 complement(1452358..1452729) 1 NC_015422.1 KEGG: vei:Veis_2284 hypothetical protein; hypothetical protein 1452729 10482410 Alide2_1382 Alicycliphilus denitrificans K601 hypothetical protein YP_004387300.1 1452358 R 596154 CDS YP_004387301.1 330823998 10482411 complement(1452741..1453292) 1 NC_015422.1 KEGG: xtr:100495621 UPF0065 protein in clcB-clcD intergenic region-like; hypothetical protein 1453292 10482411 Alide2_1383 Alicycliphilus denitrificans K601 hypothetical protein YP_004387301.1 1452741 R 596154 CDS YP_004387302.1 330823999 10482412 1453479..1454303 1 NC_015422.1 TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Bacitracin resistance protein BacA; KEGG: ajs:Ajs_1152 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA; UDP-diphosphatase 1454303 10482412 Alide2_1384 Alicycliphilus denitrificans K601 UDP-diphosphatase YP_004387302.1 1453479 D 596154 CDS YP_004387303.1 330824000 10482413 complement(1454319..1455131) 1 NC_015422.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_1074 alpha/beta hydrolase fold protein; alpha/beta fold family hydrolase 1455131 10482413 Alide2_1385 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004387303.1 1454319 R 596154 CDS YP_004387304.1 330824001 10482414 1455443..1456867 1 NC_015422.1 KEGG: dac:Daci_2256 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Uncharacterised protein domain Spy-rel; RND family efflux transporter MFP subunit 1456867 10482414 Alide2_1386 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004387304.1 1455443 D 596154 CDS YP_004387305.1 330824002 10482415 1456904..1460020 1 NC_015422.1 PFAM: Acriflavin resistance protein; KEGG: dac:Daci_2257 acriflavin resistance protein; acriflavin resistance protein 1460020 10482415 Alide2_1387 Alicycliphilus denitrificans K601 acriflavin resistance protein YP_004387305.1 1456904 D 596154 CDS YP_004387306.1 330824003 10482416 1460141..1463266 1 NC_015422.1 PFAM: Acriflavin resistance protein; KEGG: dac:Daci_2258 acriflavin resistance protein; acriflavin resistance protein 1463266 10482416 Alide2_1388 Alicycliphilus denitrificans K601 acriflavin resistance protein YP_004387306.1 1460141 D 596154 CDS YP_004387307.1 330824004 10482417 1463269..1464681 1 NC_015422.1 KEGG: dac:Daci_2259 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 1464681 10482417 Alide2_1389 Alicycliphilus denitrificans K601 NodT family RND efflux system outer membrane lipoprotein YP_004387307.1 1463269 D 596154 CDS YP_004387308.1 330824005 10482418 complement(1464694..1467306) 1 NC_015422.1 KEGG: dia:Dtpsy_1076 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; manually curated; TIGRFAM: DNA mismatch repair protein MutS, type 1; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; HAMAP: DNA mismatch repair protein MutS, type 1; DNA mismatch repair protein mutS 1467306 10482418 Alide2_1390 Alicycliphilus denitrificans K601 DNA mismatch repair protein mutS YP_004387308.1 1464694 R 596154 CDS YP_004387309.1 330824006 10482419 complement(1467629..1468303) 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bph:Bphy_3516 TetR family transcriptional regulator; TetR family transcriptional regulator 1468303 10482419 Alide2_1391 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004387309.1 1467629 R 596154 CDS YP_004387310.1 330824007 10482420 1468421..1469257 1 NC_015422.1 KEGG: bja:bll6360 putative bifunctional enzyme 2-hydroxyhepta-2,4-diene-1,7-dioatesomerase 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase protein; PFAM: Fumarylacetoacetase, C-terminal-like; ureidoglycolate lyase 1469257 10482420 Alide2_1392 Alicycliphilus denitrificans K601 ureidoglycolate lyase YP_004387310.1 1468421 D 596154 CDS YP_004387311.1 330824008 10482423 1470832..1471062 1 NC_015422.1 hypothetical protein 1471062 10482423 Alide2_1395 Alicycliphilus denitrificans K601 hypothetical protein YP_004387311.1 1470832 D 596154 CDS YP_004387312.1 330824009 10482424 complement(1471098..1472084) 1 NC_015422.1 KEGG: dac:Daci_5118 hypothetical protein; hypothetical protein 1472084 10482424 Alide2_1396 Alicycliphilus denitrificans K601 hypothetical protein YP_004387312.1 1471098 R 596154 CDS YP_004387313.1 330824010 10482425 complement(1472123..1473319) 1 NC_015422.1 KEGG: dac:Daci_0789 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase; L-lactate dehydrogenase (cytochrome) 1473319 10482425 Alide2_1397 Alicycliphilus denitrificans K601 L-lactate dehydrogenase (cytochrome) YP_004387313.1 1472123 R 596154 CDS YP_004387314.1 330824011 10482426 1473432..1474346 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0788 LysR family transcriptional regulator; LysR family transcriptional regulator 1474346 10482426 Alide2_1398 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387314.1 1473432 D 596154 CDS YP_004387315.1 330824012 10482427 complement(1474383..1475963) 1 NC_015422.1 KEGG: dia:Dtpsy_1077 alkaline phosphatase; PFAM: Alkaline phosphatase D-related; alkaline phosphatase 1475963 10482427 Alide2_1399 Alicycliphilus denitrificans K601 alkaline phosphatase YP_004387315.1 1474383 R 596154 CDS YP_004387316.1 330824013 10482428 complement(1475990..1477570) 1 NC_015422.1 SMART: Diguanylate cyclase, predicted; TIGRFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_1078 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; diguanylate cyclase 1477570 10482428 Alide2_1400 Alicycliphilus denitrificans K601 diguanylate cyclase YP_004387316.1 1475990 R 596154 CDS YP_004387317.1 330824014 10482429 1477636..1478457 1 NC_015422.1 TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; KEGG: ajs:Ajs_1160 stationary phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; stationary-phase survival protein SurE 1478457 10482429 Alide2_1401 Alicycliphilus denitrificans K601 stationary-phase survival protein SurE YP_004387317.1 1477636 D 596154 CDS YP_004387318.1 330824015 10482430 1478457..1479230 1 NC_015422.1 TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: dia:Dtpsy_1081 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1479230 10482430 Alide2_1402 Alicycliphilus denitrificans K601 protein-L-isoaspartate O-methyltransferase YP_004387318.1 1478457 D 596154 CDS YP_004387319.1 330824016 10482431 1479242..1480144 1 NC_015422.1 KEGG: dia:Dtpsy_1082 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; peptidase M23 1480144 10482431 Alide2_1403 Alicycliphilus denitrificans K601 peptidase M23 YP_004387319.1 1479242 D 596154 CDS YP_004387320.1 330824017 10482432 1480141..1481151 1 NC_015422.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: dia:Dtpsy_1083 pseudouridine synthase, RluA family; SMART: RNA-binding S4; RluA family pseudouridine synthase 1481151 10482432 Alide2_1404 Alicycliphilus denitrificans K601 RluA family pseudouridine synthase YP_004387320.1 1480141 D 596154 CDS YP_004387321.1 330824018 10482433 1481320..1481988 1 NC_015422.1 KEGG: dia:Dtpsy_1084 chromosome segregation and condensation protein, ScpB; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote; chromosome segregation and condensation protein ScpB 1481988 10482433 Alide2_1405 Alicycliphilus denitrificans K601 chromosome segregation and condensation protein ScpB YP_004387321.1 1481320 D 596154 CDS YP_004387322.1 330824019 10482434 1481990..1483345 1 NC_015422.1 TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: dia:Dtpsy_1085 pseudouridine synthase; SMART: RNA-binding S4; pseudouridine synthase Rsu 1483345 10482434 Alide2_1406 Alicycliphilus denitrificans K601 pseudouridine synthase Rsu YP_004387322.1 1481990 D 596154 CDS YP_004387323.1 330824020 10482435 1483424..1483849 1 NC_015422.1 PFAM: Nucleoside diphosphate kinase; KEGG: ajs:Ajs_1166 nucleoside diphosphate kinase; SMART: Nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1483849 10482435 Alide2_1407 Alicycliphilus denitrificans K601 nucleoside-diphosphate kinase YP_004387323.1 1483424 D 596154 CDS YP_004387324.1 330824021 10482436 1483937..1485061 1 NC_015422.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: dia:Dtpsy_1087 radical SAM enzyme, Cfr family; PFAM: Radical SAM; ribosomal RNA large subunit methyltransferase N 1485061 10482436 Alide2_1408 Alicycliphilus denitrificans K601 ribosomal RNA large subunit methyltransferase N YP_004387324.1 1483937 D 596154 CDS YP_004387325.1 330824022 10482437 1485083..1485910 1 NC_015422.1 KEGG: dia:Dtpsy_1088 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1; type IV pilus biogenesis/stability protein PilW 1485910 10482437 Alide2_1409 Alicycliphilus denitrificans K601 type IV pilus biogenesis/stability protein PilW YP_004387325.1 1485083 D 596154 CDS YP_004387326.1 330824023 10482438 1485903..1486799 1 NC_015422.1 KEGG: dia:Dtpsy_1089 hypothetical protein; hypothetical protein 1486799 10482438 Alide2_1410 Alicycliphilus denitrificans K601 hypothetical protein YP_004387326.1 1485903 D 596154 CDS YP_004387327.1 330824024 10482439 1486800..1488074 1 NC_015422.1 KEGG: dia:Dtpsy_1090 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1488074 10482439 Alide2_1411 Alicycliphilus denitrificans K601 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_004387327.1 1486800 D 596154 CDS YP_004387328.1 330824025 10482440 1488158..1489447 1 NC_015422.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: dia:Dtpsy_1091 histidyl-tRNA synthetase; histidyl-tRNA synthetase 1489447 10482440 Alide2_1412 Alicycliphilus denitrificans K601 histidyl-tRNA synthetase YP_004387328.1 1488158 D 596154 CDS YP_004387329.1 330824026 10482441 1489463..1490143 1 NC_015422.1 PFAM: Protein of unknown function DUF2133; KEGG: dia:Dtpsy_1092 hypothetical protein; hypothetical protein 1490143 10482441 Alide2_1413 Alicycliphilus denitrificans K601 hypothetical protein YP_004387329.1 1489463 D 596154 CDS YP_004387330.1 330824027 10482442 1490140..1491288 1 NC_015422.1 KEGG: dia:Dtpsy_1093 outer membrane assembly lipoprotein YfgL; TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; outer membrane assembly lipoprotein YfgL 1491288 10482442 Alide2_1414 Alicycliphilus denitrificans K601 outer membrane assembly lipoprotein YfgL YP_004387330.1 1490140 D 596154 CDS YP_004387331.1 330824028 10482443 1491307..1492650 1 NC_015422.1 KEGG: dia:Dtpsy_1094 GTP-binding protein EngA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; ribosome-associated GTPase EngA 1492650 10482443 Alide2_1415 Alicycliphilus denitrificans K601 ribosome-associated GTPase EngA YP_004387331.1 1491307 D 596154 CDS YP_004387332.1 330824029 10482444 1492674..1492976 1 NC_015422.1 KEGG: dia:Dtpsy_1095 RNA chaperone Hfq; TIGRFAM: Host factor Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain; RNA chaperone Hfq 1492976 10482444 Alide2_1416 Alicycliphilus denitrificans K601 RNA chaperone Hfq YP_004387332.1 1492674 D 596154 CDS YP_004387333.1 330824030 10482445 1493041..1494219 1 NC_015422.1 KEGG: ajs:Ajs_1176 small GTP-binding protein; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related; GTP-binding proten HflX 1494219 10482445 Alide2_1417 Alicycliphilus denitrificans K601 GTP-binding proten HflX YP_004387333.1 1493041 D 596154 CDS YP_004387334.1 330824031 10482446 1494272..1495648 1 NC_015422.1 TIGRFAM: HflK; PFAM: Band 7 protein; Protein HflK, N-terminal; KEGG: dia:Dtpsy_1097 HflK protein; SMART: Band 7 protein; HflK protein 1495648 10482446 Alide2_1418 Alicycliphilus denitrificans K601 HflK protein YP_004387334.1 1494272 D 596154 CDS YP_004387335.1 330824032 10482447 1495658..1496572 1 NC_015422.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: ajs:Ajs_1178 HflC protein; SMART: Band 7 protein; HflC protein 1496572 10482447 Alide2_1419 Alicycliphilus denitrificans K601 HflC protein YP_004387335.1 1495658 D 596154 CDS YP_004387336.1 330824033 10482448 1496601..1496789 1 NC_015422.1 PFAM: Protein of unknown function DUF2065; KEGG: ajs:Ajs_1179 hypothetical protein; hypothetical protein 1496789 10482448 Alide2_1420 Alicycliphilus denitrificans K601 hypothetical protein YP_004387336.1 1496601 D 596154 CDS YP_004387337.1 330824034 10482449 1496864..1498012 1 NC_015422.1 TIGRFAM: Histidyl-tRNA synthetase, class IIa, putative; KEGG: ajs:Ajs_1180 tRNA synthetase, class II (G, H, P and S); histidyl-tRNA synthetase 2 1498012 10482449 Alide2_1421 Alicycliphilus denitrificans K601 histidyl-tRNA synthetase 2 YP_004387337.1 1496864 D 596154 CDS YP_004387338.1 330824035 10482450 1498040..1499416 1 NC_015422.1 SMART: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; KEGG: dia:Dtpsy_1101 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; adenylosuccinate synthetase 1499416 10482450 Alide2_1422 Alicycliphilus denitrificans K601 adenylosuccinate synthetase YP_004387338.1 1498040 D 596154 CDS YP_004387339.1 330824036 10482451 1499488..1500012 1 NC_015422.1 PFAM: Phosphoribosyltransferase; KEGG: ajs:Ajs_1182 phosphoribosyltransferase; phosphoribosyltransferase 1500012 10482451 Alide2_1423 Alicycliphilus denitrificans K601 phosphoribosyltransferase YP_004387339.1 1499488 D 596154 CDS YP_004387340.1 330824037 10482457 1505864..1506601 1 NC_015422.1 KEGG: ajs:Ajs_1183 ribosomal small subunit pseudouridine synthase A; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; pseudouridine synthase Rsu 1506601 10482457 Alide2_1424 Alicycliphilus denitrificans K601 pseudouridine synthase Rsu YP_004387340.1 1505864 D 596154 CDS YP_004387341.1 330824038 10482458 1506709..1507674 1 NC_015422.1 KEGG: dia:Dtpsy_1104 hypothetical protein; hypothetical protein 1507674 10482458 Alide2_1425 Alicycliphilus denitrificans K601 hypothetical protein YP_004387341.1 1506709 D 596154 CDS YP_004387342.1 330824039 10482459 1507688..1508491 1 NC_015422.1 KEGG: dia:Dtpsy_1105 polysaccharide deacetylase; manually curated; PFAM: Polysaccharide deacetylase; polysaccharide deacetylase 1508491 10482459 Alide2_1426 Alicycliphilus denitrificans K601 polysaccharide deacetylase YP_004387342.1 1507688 D 596154 CDS YP_004387343.1 330824040 10482460 1508533..1509531 1 NC_015422.1 PFAM: Fatty acid hydroxylase; KEGG: dia:Dtpsy_1106 fatty acid hydroxylase; fatty acid hydroxylase 1509531 10482460 Alide2_1427 Alicycliphilus denitrificans K601 fatty acid hydroxylase YP_004387343.1 1508533 D 596154 CDS YP_004387344.1 330824041 10482461 1509559..1510452 1 NC_015422.1 PFAM: Uncharacterised protein family CysZ; KEGG: dia:Dtpsy_1107 putative transmembrane protein; hypothetical protein 1510452 10482461 Alide2_1428 Alicycliphilus denitrificans K601 hypothetical protein YP_004387344.1 1509559 D 596154 CDS YP_004387345.1 330824042 10482462 1510449..1511270 1 NC_015422.1 KEGG: ajs:Ajs_1188 molybdopterin binding domain-containing protein; PFAM: Molybdopterin binding; SMART: Molybdopterin binding; molybdopterin binding domain-containing protein 1511270 10482462 Alide2_1429 Alicycliphilus denitrificans K601 molybdopterin binding domain-containing protein YP_004387345.1 1510449 D 596154 CDS YP_004387346.1 330824043 10482463 1511442..1512857 1 NC_015422.1 TIGRFAM: Glutamine synthetase type I; KEGG: aav:Aave_1442 L-glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp; glutamine synthetase, type I 1512857 10482463 Alide2_1430 Alicycliphilus denitrificans K601 glutamine synthetase, type I YP_004387346.1 1511442 D 596154 CDS YP_004387347.1 330824044 10482464 1513031..1513519 1 NC_015422.1 KEGG: dia:Dtpsy_1110 putative signal peptide protein; hypothetical protein 1513519 10482464 Alide2_1431 Alicycliphilus denitrificans K601 hypothetical protein YP_004387347.1 1513031 D 596154 CDS YP_004387348.1 330824045 10482465 1513544..1514614 1 NC_015422.1 manually curated; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_1111 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; signal transduction histidine kinase, nitrogen specific, NtrB 1514614 10482465 Alide2_1432 Alicycliphilus denitrificans K601 signal transduction histidine kinase, nitrogen specific, NtrB YP_004387348.1 1513544 D 596154 CDS YP_004387349.1 330824046 10482466 1514656..1516095 1 NC_015422.1 TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: dia:Dtpsy_1112 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; Fis family nitrogen metabolism transcriptional regulator NtrC 1516095 10482466 Alide2_1433 Alicycliphilus denitrificans K601 Fis family nitrogen metabolism transcriptional regulator NtrC YP_004387349.1 1514656 D 596154 CDS YP_004387350.1 330824047 10482467 complement(1516420..1517196) 1 NC_015422.1 TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: dia:Dtpsy_1114 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 1517196 10482467 Alide2_1434 Alicycliphilus denitrificans K601 exodeoxyribonuclease III Xth YP_004387350.1 1516420 R 596154 CDS YP_004387351.1 330824048 10482468 complement(1517203..1517493) 1 NC_015422.1 KEGG: shn:Shewana3_1258 XRE family transcriptional regulator; hypothetical protein 1517493 10482468 Alide2_1435 Alicycliphilus denitrificans K601 hypothetical protein YP_004387351.1 1517203 R 596154 CDS YP_004387352.1 330824049 10482469 1517706..1519406 1 NC_015422.1 TIGRFAM: ATPase, K+ transporting, A subunit; KEGG: pap:PSPA7_3712 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit; potassium-transporting ATPase subunit A 1519406 10482469 Alide2_1436 Alicycliphilus denitrificans K601 potassium-transporting ATPase subunit A YP_004387352.1 1517706 D 596154 CDS YP_004387353.1 330824050 10482470 1519418..1521442 1 NC_015422.1 PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: tgr:Tgr7_1888 potassium-transporting ATPase subunit B; potassium-transporting ATPase subunit B 1521442 10482470 Alide2_1437 Alicycliphilus denitrificans K601 potassium-transporting ATPase subunit B YP_004387353.1 1519418 D 596154 CDS YP_004387354.1 330824051 10482471 1521456..1522088 1 NC_015422.1 TIGRFAM: Potassium transporting ATPase, C subunit; KEGG: pap:PSPA7_3714 K+-transporting ATPase subunit C; PFAM: Potassium transporting ATPase, C subunit; potassium-transporting ATPase subunit C 1522088 10482471 Alide2_1438 Alicycliphilus denitrificans K601 potassium-transporting ATPase subunit C YP_004387354.1 1521456 D 596154 CDS YP_004387355.1 330824052 10482472 1522104..1524833 1 NC_015422.1 KEGG: tgr:Tgr7_1885 sensor protein KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; ATPase-like, ATP-binding domain; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; osmosensitive K channel His kinase sensor 1524833 10482472 Alide2_1439 Alicycliphilus denitrificans K601 osmosensitive K channel His kinase sensor YP_004387355.1 1522104 D 596154 CDS YP_004387356.1 330824053 10482473 1524838..1525548 1 NC_015422.1 KEGG: tgr:Tgr7_1884 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 1525548 10482473 Alide2_1440 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004387356.1 1524838 D 596154 CDS YP_004387357.1 330824054 10482474 1525625..1526002 1 NC_015422.1 KEGG: rle:pRL110581 putative transposase-related protein; transposase-like protein 1526002 10482474 Alide2_1441 Alicycliphilus denitrificans K601 transposase-like protein YP_004387357.1 1525625 D 596154 CDS YP_004387358.1 330824055 10482475 1525999..1526385 1 NC_015422.1 PFAM: Transposase, IS4-like; KEGG: nwi:Nwi_1015 transposase, IS4; transposase IS4 family protein 1526385 10482475 Alide2_1442 Alicycliphilus denitrificans K601 transposase IS4 family protein YP_004387358.1 1525999 D 596154 CDS YP_004387359.1 330824056 10482476 1526573..1527244 1 NC_015422.1 PFAM: Protein of unknown function DUF3348; KEGG: vap:Vapar_3241 hypothetical protein; hypothetical protein 1527244 10482476 Alide2_1443 Alicycliphilus denitrificans K601 hypothetical protein YP_004387359.1 1526573 D 596154 CDS YP_004387360.1 330824057 10482477 1527241..1529979 1 NC_015422.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Domain of unknown function DUF802; KEGG: vap:Vapar_3240 protein of unknown function DUF802; OmpA/MotB domain-containing protein 1529979 10482477 Alide2_1444 Alicycliphilus denitrificans K601 OmpA/MotB domain-containing protein YP_004387360.1 1527241 D 596154 CDS YP_004387361.1 330824058 10482479 complement(1530511..1531005) 1 NC_015422.1 KEGG: dia:Dtpsy_1115 dihydrofolate reductase; PFAM: Dihydrofolate reductase domain; dihydrofolate reductase 1531005 10482479 Alide2_1446 Alicycliphilus denitrificans K601 dihydrofolate reductase YP_004387361.1 1530511 R 596154 CDS YP_004387362.1 330824059 10482480 complement(1531002..1531817) 1 NC_015422.1 TIGRFAM: Thymidylate synthase; KEGG: ajs:Ajs_1197 thymidylate synthase; PFAM: Thymidylate synthase; thymidylate synthase 1531817 10482480 Alide2_1447 Alicycliphilus denitrificans K601 thymidylate synthase YP_004387362.1 1531002 R 596154 CDS YP_004387363.1 330824060 10482481 complement(1531870..1533294) 1 NC_015422.1 KEGG: dia:Dtpsy_1117 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; D-lactate dehydrogenase 1533294 10482481 Alide2_1448 Alicycliphilus denitrificans K601 D-lactate dehydrogenase YP_004387363.1 1531870 R 596154 CDS YP_004387364.1 330824061 10482482 complement(1533291..1533719) 1 NC_015422.1 PFAM: Protein of unknown function DUF2069, membrane; KEGG: dia:Dtpsy_1118 membrane protein-like protein; hypothetical protein 1533719 10482482 Alide2_1449 Alicycliphilus denitrificans K601 hypothetical protein YP_004387364.1 1533291 R 596154 CDS YP_004387365.1 330824062 10482483 1533741..1534994 1 NC_015422.1 KEGG: dia:Dtpsy_1119 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related; ribonuclease BN 1534994 10482483 Alide2_1450 Alicycliphilus denitrificans K601 ribonuclease BN YP_004387365.1 1533741 D 596154 CDS YP_004387366.1 330824063 10482484 complement(1535196..1537220) 1 NC_015422.1 PFAM: Protein of unknown function DUF2868; Protein of unknown function DUF3482; KEGG: pna:Pnap_2063 hypothetical protein; hypothetical protein 1537220 10482484 Alide2_1451 Alicycliphilus denitrificans K601 hypothetical protein YP_004387366.1 1535196 R 596154 CDS YP_004387367.1 330824064 10482485 complement(1537234..1538526) 1 NC_015422.1 KEGG: ajs:Ajs_1201 amine oxidase; TIGRFAM: Squalene-associated FAD-dependent desaturase; PFAM: Amine oxidase; squalene-associated FAD-dependent desaturase 1538526 10482485 Alide2_1452 Alicycliphilus denitrificans K601 squalene-associated FAD-dependent desaturase YP_004387367.1 1537234 R 596154 CDS YP_004387368.1 330824065 10482486 1538709..1540343 1 NC_015422.1 KEGG: rfr:Rfer_3023 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 1540343 10482486 Alide2_1453 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004387368.1 1538709 D 596154 CDS YP_004387369.1 330824066 10482487 complement(1540375..1541214) 1 NC_015422.1 TIGRFAM: Squalene/phytoene synthase HpnD; KEGG: dia:Dtpsy_1121 squalene synthase HpnD; PFAM: Squalene/phytoene synthase; squalene synthase 1541214 10482487 Alide2_1454 Alicycliphilus denitrificans K601 squalene synthase YP_004387369.1 1540375 R 596154 CDS YP_004387370.1 330824067 10482488 complement(1541328..1542206) 1 NC_015422.1 KEGG: dia:Dtpsy_1124 squalene synthase HpnC; TIGRFAM: Squalene synthase HpnC; PFAM: Squalene/phytoene synthase; squalene synthase 1542206 10482488 Alide2_1455 Alicycliphilus denitrificans K601 squalene synthase YP_004387370.1 1541328 R 596154 CDS YP_004387371.1 330824068 10482489 1542299..1543570 1 NC_015422.1 KEGG: dia:Dtpsy_1125 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 1543570 10482489 Alide2_1456 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004387371.1 1542299 D 596154 CDS YP_004387372.1 330824069 10482490 1543580..1546699 1 NC_015422.1 PFAM: Acriflavin resistance protein; KEGG: ajs:Ajs_1207 acriflavin resistance protein; acriflavin resistance protein 1546699 10482490 Alide2_1457 Alicycliphilus denitrificans K601 acriflavin resistance protein YP_004387372.1 1543580 D 596154 CDS YP_004387373.1 330824070 10482492 1546924..1548234 1 NC_015422.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: dia:Dtpsy_1127 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial; trigger factor Tig 1548234 10482492 Alide2_1458 Alicycliphilus denitrificans K601 trigger factor Tig YP_004387373.1 1546924 D 596154 CDS YP_004387374.1 330824071 10482493 1548359..1548967 1 NC_015422.1 TIGRFAM: Peptidase S14, ClpP; KEGG: dia:Dtpsy_1128 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 1548967 10482493 Alide2_1459 Alicycliphilus denitrificans K601 ATP-dependent Clp protease, proteolytic subunit ClpP YP_004387374.1 1548359 D 596154 CDS YP_004387375.1 330824072 10482494 1549067..1550332 1 NC_015422.1 TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Clp ATPase, C-terminal; Zinc finger, C4-type; KEGG: dia:Dtpsy_1129 ATP-dependent protease ATP-binding subunit ClpX; SMART: ATPase, AAA+ type, core; ATP-dependent Clp protease ATP-binding subunit ClpX 1550332 10482494 Alide2_1460 Alicycliphilus denitrificans K601 ATP-dependent Clp protease ATP-binding subunit ClpX YP_004387375.1 1549067 D 596154 CDS YP_004387376.1 330824073 10482495 1550471..1552891 1 NC_015422.1 SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: dia:Dtpsy_1130 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; anti-sigma H sporulation factor LonB 1552891 10482495 Alide2_1461 Alicycliphilus denitrificans K601 anti-sigma H sporulation factor LonB YP_004387376.1 1550471 D 596154 CDS YP_004387377.1 330824074 10482498 1553362..1553979 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_4464 TetR family transcriptional regulator; TetR family transcriptional regulator 1553979 10482498 Alide2_1462 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004387377.1 1553362 D 596154 CDS YP_004387378.1 330824075 10482499 1554184..1555068 1 NC_015422.1 KEGG: bbr:BB0589 hypothetical protein; PFAM: Aldehyde-lyase domain; citryl-CoA lyase 1555068 10482499 Alide2_1463 Alicycliphilus denitrificans K601 citryl-CoA lyase YP_004387378.1 1554184 D 596154 CDS YP_004387379.1 330824076 10482500 1555096..1555557 1 NC_015422.1 PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7289 MaoC-like dehydratase; MaoC domain-containing protein dehydratase 1555557 10482500 Alide2_1464 Alicycliphilus denitrificans K601 MaoC domain-containing protein dehydratase YP_004387379.1 1555096 D 596154 CDS YP_004387380.1 330824077 10482501 1555569..1556735 1 NC_015422.1 KEGG: bur:Bcep18194_C7290 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 1556735 10482501 Alide2_1465 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004387380.1 1555569 D 596154 CDS YP_004387381.1 330824078 10482502 1556812..1558056 1 NC_015422.1 KEGG: bur:Bcep18194_B2644 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 1558056 10482502 Alide2_1466 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387381.1 1556812 D 596154 CDS YP_004387382.1 330824079 10482503 1558058..1559218 1 NC_015422.1 KEGG: bbr:BB0593 CaiB/BaiF family protein; PFAM: CoA-transferase family III; alpha-methylacyl-CoA racemase 1559218 10482503 Alide2_1467 Alicycliphilus denitrificans K601 alpha-methylacyl-CoA racemase YP_004387382.1 1558058 D 596154 CDS YP_004387383.1 330824080 10482504 1559231..1560196 1 NC_015422.1 KEGG: bbr:BB0594 hypothetical protein; hypothetical protein 1560196 10482504 Alide2_1468 Alicycliphilus denitrificans K601 hypothetical protein YP_004387383.1 1559231 D 596154 CDS YP_004387384.1 330824081 10482505 1560193..1560615 1 NC_015422.1 KEGG: bbr:BB0595 hypothetical protein; hypothetical protein 1560615 10482505 Alide2_1469 Alicycliphilus denitrificans K601 hypothetical protein YP_004387384.1 1560193 D 596154 CDS YP_004387385.1 330824082 10482506 1560619..1561302 1 NC_015422.1 PFAM: Nitroreductase-like; KEGG: bbr:BB0596 nitroreductase family protein; nitroreductase 1561302 10482506 Alide2_1470 Alicycliphilus denitrificans K601 nitroreductase YP_004387385.1 1560619 D 596154 CDS YP_004387386.1 330824083 10482507 1561307..1562077 1 NC_015422.1 PFAM: Crotonase, core; KEGG: bbr:BB0597 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 1562077 10482507 Alide2_1471 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387386.1 1561307 D 596154 CDS YP_004387387.1 330824084 10482508 1562272..1563444 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB0598 extracellular ligand binding protein; extracellular ligand-binding receptor 1563444 10482508 Alide2_1472 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004387387.1 1562272 D 596154 CDS YP_004387388.1 330824085 10482509 1563454..1564329 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: bbr:BB0599 putative branched-chain amino acid transport system permease protein; ABC transporter permease 1564329 10482509 Alide2_1473 Alicycliphilus denitrificans K601 ABC transporter permease YP_004387388.1 1563454 D 596154 CDS YP_004387389.1 330824086 10482510 1564322..1565239 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: bbr:BB0600 putative branched-chain amino acid transport system permease protein; ABC transporter permease 1565239 10482510 Alide2_1474 Alicycliphilus denitrificans K601 ABC transporter permease YP_004387389.1 1564322 D 596154 CDS YP_004387390.1 330824087 10482511 1565242..1565991 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: bbr:BB0601 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 1565991 10482511 Alide2_1475 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004387390.1 1565242 D 596154 CDS YP_004387391.1 330824088 10482512 1565981..1566700 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: bbr:BB0602 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 1566700 10482512 Alide2_1476 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004387391.1 1565981 D 596154 CDS YP_004387392.1 330824089 10482513 complement(1566715..1568685) 1 NC_015422.1 KEGG: bbr:BB0603 NADH:flavin oxidoreductase / NADH oxidase family protein; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; Alanine dehydrogenase/PNT, C-terminal; trimethylamine dehydrogenase 1568685 10482513 Alide2_1477 Alicycliphilus denitrificans K601 trimethylamine dehydrogenase YP_004387392.1 1566715 R 596154 CDS YP_004387393.1 330824090 10482514 complement(1568682..1569464) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0604 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1569464 10482514 Alide2_1478 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004387393.1 1568682 R 596154 CDS YP_004387394.1 330824091 10482515 complement(1569629..1571050) 1 NC_015422.1 PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_B2639 hypothetical protein; MmgE/PrpD family protein 1571050 10482515 Alide2_1479 Alicycliphilus denitrificans K601 MmgE/PrpD family protein YP_004387394.1 1569629 R 596154 CDS YP_004387395.1 330824092 10482516 1571140..1572096 1 NC_015422.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2640 LysR family transcriptional regulator; LysR family transcriptional regulator 1572096 10482516 Alide2_1480 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387395.1 1571140 D 596154 CDS YP_004387396.1 330824093 10482517 1572263..1573231 1 NC_015422.1 KEGG: bbr:BB0605 hypothetical protein; hypothetical protein 1573231 10482517 Alide2_1481 Alicycliphilus denitrificans K601 hypothetical protein YP_004387396.1 1572263 D 596154 CDS YP_004387397.1 330824094 10482519 complement(1573392..1574549) 1 NC_015422.1 KEGG: bur:Bcep18194_C7493 alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III; alpha-methylacyl-CoA racemase 1574549 10482519 Alide2_1483 Alicycliphilus denitrificans K601 alpha-methylacyl-CoA racemase YP_004387397.1 1573392 R 596154 CDS YP_004387398.1 330824095 10482520 complement(1574595..1575071) 1 NC_015422.1 hypothetical protein 1575071 10482520 Alide2_1484 Alicycliphilus denitrificans K601 hypothetical protein YP_004387398.1 1574595 R 596154 CDS YP_004387399.1 330824096 10482521 complement(1575398..1575556) 1 NC_015422.1 hypothetical protein 1575556 10482521 Alide2_1485 Alicycliphilus denitrificans K601 hypothetical protein YP_004387399.1 1575398 R 596154 CDS YP_004387400.1 330824097 10482522 complement(1575581..1576738) 1 NC_015422.1 KEGG: reu:Reut_A1830 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 1576738 10482522 Alide2_1486 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387400.1 1575581 R 596154 CDS YP_004387401.1 330824098 10482523 complement(1576786..1578018) 1 NC_015422.1 KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 1578018 10482523 Alide2_1487 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387401.1 1576786 R 596154 CDS YP_004387402.1 330824099 10482524 complement(1578024..1579031) 1 NC_015422.1 KEGG: reu:Reut_A1831 hypothetical protein; hypothetical protein 1579031 10482524 Alide2_1488 Alicycliphilus denitrificans K601 hypothetical protein YP_004387402.1 1578024 R 596154 CDS YP_004387403.1 330824100 10482525 complement(1579149..1580330) 1 NC_015422.1 KEGG: eba:ebA306 lipid-transfer protein; PFAM: Beta-ketoacyl synthase, C-terminal; propanoyl-CoA C-acyltransferase 1580330 10482525 Alide2_1489 Alicycliphilus denitrificans K601 propanoyl-CoA C-acyltransferase YP_004387403.1 1579149 R 596154 CDS YP_004387404.1 330824101 10482526 complement(1580343..1580684) 1 NC_015422.1 KEGG: bbt:BBta_2933 hypothetical protein; hypothetical protein 1580684 10482526 Alide2_1490 Alicycliphilus denitrificans K601 hypothetical protein YP_004387404.1 1580343 R 596154 CDS YP_004387405.1 330824102 10482527 complement(1580686..1582044) 1 NC_015422.1 PFAM: Protein of unknown function DUF1446; KEGG: sth:STH1574 hypothetical protein; hypothetical protein 1582044 10482527 Alide2_1491 Alicycliphilus denitrificans K601 hypothetical protein YP_004387405.1 1580686 R 596154 CDS YP_004387406.1 330824103 10482528 complement(1582050..1582550) 1 NC_015422.1 PFAM: MaoC-like dehydratase; KEGG: reu:Reut_A1834 MaoC-like dehydratase; MaoC domain-containing protein dehydratase 1582550 10482528 Alide2_1492 Alicycliphilus denitrificans K601 MaoC domain-containing protein dehydratase YP_004387406.1 1582050 R 596154 CDS YP_004387407.1 330824104 10482529 complement(1582565..1583707) 1 NC_015422.1 KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 1583707 10482529 Alide2_1493 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004387407.1 1582565 R 596154 CDS YP_004387408.1 330824105 10482530 complement(1583853..1583966) 1 NC_015422.1 hypothetical protein 1583966 10482530 Alide2_1494 Alicycliphilus denitrificans K601 hypothetical protein YP_004387408.1 1583853 R 596154 CDS YP_004387409.1 330824106 10482531 1584236..1585042 1 NC_015422.1 KEGG: bur:Bcep18194_C7276 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 1585042 10482531 Alide2_1495 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004387409.1 1584236 D 596154 CDS YP_004387410.1 330824107 10482532 1585084..1585899 1 NC_015422.1 PFAM: Crotonase, core; KEGG: pol:Bpro_5272 short chain enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1585899 10482532 Alide2_1496 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387410.1 1585084 D 596154 CDS YP_004387411.1 330824108 10482533 1585961..1586974 1 NC_015422.1 KEGG: reu:Reut_A1831 hypothetical protein; hypothetical protein 1586974 10482533 Alide2_1497 Alicycliphilus denitrificans K601 hypothetical protein YP_004387411.1 1585961 D 596154 CDS YP_004387412.1 330824109 10482534 1586980..1588197 1 NC_015422.1 KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 1588197 10482534 Alide2_1498 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387412.1 1586980 D 596154 CDS YP_004387413.1 330824110 10482535 complement(1588198..1589127) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bur:Bcep18194_C7486 LysR family transcriptional regulator; LysR family transcriptional regulator 1589127 10482535 Alide2_1499 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387413.1 1588198 R 596154 CDS YP_004387414.1 330824111 10482537 complement(1590659..1592278) 1 NC_015422.1 KEGG: bur:Bcep18194_C7484 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; choline dehydrogenase 1592278 10482537 Alide2_1501 Alicycliphilus denitrificans K601 choline dehydrogenase YP_004387414.1 1590659 R 596154 CDS YP_004387415.1 330824112 10482538 1592518..1593465 1 NC_015422.1 KEGG: vei:Veis_2943 hypothetical protein; hypothetical protein 1593465 10482538 Alide2_1502 Alicycliphilus denitrificans K601 hypothetical protein YP_004387415.1 1592518 D 596154 CDS YP_004387416.1 330824113 10482539 1593538..1594158 1 NC_015422.1 KEGG: bur:Bcep18194_C6760 hypothetical protein; hypothetical protein 1594158 10482539 Alide2_1503 Alicycliphilus denitrificans K601 hypothetical protein YP_004387416.1 1593538 D 596154 CDS YP_004387417.1 330824114 10482540 1594155..1595594 1 NC_015422.1 PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C6759 MmgE/PrpD; MmgE/PrpD family protein 1595594 10482540 Alide2_1504 Alicycliphilus denitrificans K601 MmgE/PrpD family protein YP_004387417.1 1594155 D 596154 CDS YP_004387418.1 330824115 10482541 complement(1595639..1596433) 1 NC_015422.1 KEGG: bbr:BB0608 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 1596433 10482541 Alide2_1505 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004387418.1 1595639 R 596154 CDS YP_004387419.1 330824116 10482542 complement(1596430..1597263) 1 NC_015422.1 KEGG: bpa:BPP0603 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 1597263 10482542 Alide2_1506 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004387419.1 1596430 R 596154 CDS YP_004387420.1 330824117 10482543 1597376..1598245 1 NC_015422.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: bxe:Bxe_A2766 non-heme peroxidase; alpha/beta fold family hydrolase 1598245 10482543 Alide2_1507 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004387420.1 1597376 D 596154 CDS YP_004387421.1 330824118 10482544 complement(1598285..1599436) 1 NC_015422.1 KEGG: bbr:BB0611 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase 1599436 10482544 Alide2_1508 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004387421.1 1598285 R 596154 CDS YP_004387422.1 330824119 10482545 1599672..1600547 1 NC_015422.1 KEGG: bpa:BPP0606 putative enoyl-CoA hydratase; PFAM: MaoC-like dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 1600547 10482545 Alide2_1509 Alicycliphilus denitrificans K601 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_004387422.1 1599672 D 596154 CDS YP_004387423.1 330824120 10482546 1600578..1601327 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0613 putative short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR; 3-oxoacyl-ACP reductase 1601327 10482546 Alide2_1510 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004387423.1 1600578 D 596154 CDS YP_004387424.1 330824121 10482547 1601408..1602613 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: bur:Bcep18194_C7332 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 1602613 10482547 Alide2_1511 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004387424.1 1601408 D 596154 CDS YP_004387425.1 330824122 10482548 1602627..1604564 1 NC_015422.1 KEGG: bbr:BB0615 AMP-binding enzyme; PFAM: AMP-dependent synthetase/ligase; acetate--CoA ligase 1604564 10482548 Alide2_1512 Alicycliphilus denitrificans K601 acetate--CoA ligase YP_004387425.1 1602627 D 596154 CDS YP_004387426.1 330824123 10482549 1604570..1605418 1 NC_015422.1 KEGG: bpa:BPP0610 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 1605418 10482549 Alide2_1513 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004387426.1 1604570 D 596154 CDS YP_004387427.1 330824124 10482550 1605459..1606640 1 NC_015422.1 KEGG: bbr:BB0617 CaiB/BaiF family protein; PFAM: CoA-transferase family III; formyl-CoA transferase 1606640 10482550 Alide2_1514 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387427.1 1605459 D 596154 CDS YP_004387428.1 330824125 10482551 1606652..1608082 1 NC_015422.1 PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C7308 MmgE/PrpD; MmgE/PrpD family protein 1608082 10482551 Alide2_1515 Alicycliphilus denitrificans K601 MmgE/PrpD family protein YP_004387428.1 1606652 D 596154 CDS YP_004387429.1 330824126 10482552 complement(1608079..1609008) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bur:Bcep18194_C7296 LysR family transcriptional regulator; LysR family transcriptional regulator 1609008 10482552 Alide2_1516 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387429.1 1608079 R 596154 CDS YP_004387430.1 330824127 10482553 1609118..1610284 1 NC_015422.1 KEGG: bur:Bcep18194_C7297 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; isovaleryl-CoA dehydrogenase 1610284 10482553 Alide2_1517 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004387430.1 1609118 D 596154 CDS YP_004387431.1 330824128 10482554 1610307..1611056 1 NC_015422.1 KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha/beta 1611056 10482554 Alide2_1518 Alicycliphilus denitrificans K601 electron transfer flavoprotein subunit alpha/beta YP_004387431.1 1610307 D 596154 CDS YP_004387432.1 330824129 10482555 1611057..1612001 1 NC_015422.1 KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha 1612001 10482555 Alide2_1519 Alicycliphilus denitrificans K601 electron transfer flavoprotein subunit alpha YP_004387432.1 1611057 D 596154 CDS YP_004387433.1 330824130 10482556 1612090..1612938 1 NC_015422.1 KEGG: bbr:BB0622 hypothetical protein; hypothetical protein 1612938 10482556 Alide2_1520 Alicycliphilus denitrificans K601 hypothetical protein YP_004387433.1 1612090 D 596154 CDS YP_004387434.1 330824131 10482557 1612951..1614150 1 NC_015422.1 KEGG: bur:Bcep18194_C7301 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 1614150 10482557 Alide2_1521 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387434.1 1612951 D 596154 CDS YP_004387435.1 330824132 10482558 1614153..1614998 1 NC_015422.1 PFAM: Aldehyde-lyase domain; KEGG: bur:Bcep18194_C7302 HpcH/HpaI aldolase; HpcH/HpaI aldolase 1614998 10482558 Alide2_1522 Alicycliphilus denitrificans K601 HpcH/HpaI aldolase YP_004387435.1 1614153 D 596154 CDS YP_004387436.1 330824133 10482560 complement(1616889..1617635) 1 NC_015422.1 KEGG: jan:Jann_2264 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1617635 10482560 Alide2_1524 Alicycliphilus denitrificans K601 ABC transporter YP_004387436.1 1616889 R 596154 CDS YP_004387437.1 330824134 10482561 complement(1617800..1618564) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: jan:Jann_2265 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 1618564 10482561 Alide2_1525 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004387437.1 1617800 R 596154 CDS YP_004387438.1 330824135 10482562 complement(1618561..1619454) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: jan:Jann_2266 inner-membrane translocator; ABC transporter permease 1619454 10482562 Alide2_1526 Alicycliphilus denitrificans K601 ABC transporter permease YP_004387438.1 1618561 R 596154 CDS YP_004387439.1 330824136 10482563 complement(1619459..1620352) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: jan:Jann_2267 inner-membrane translocator; ABC transporter permease 1620352 10482563 Alide2_1527 Alicycliphilus denitrificans K601 ABC transporter permease YP_004387439.1 1619459 R 596154 CDS YP_004387440.1 330824137 10482564 complement(1620431..1621564) 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: jan:Jann_2263 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1621564 10482564 Alide2_1528 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004387440.1 1620431 R 596154 CDS YP_004387441.1 330824138 10482565 complement(1621651..1622721) 1 NC_015422.1 KEGG: bur:Bcep18194_C7304 zinc-containing alcohol dehydrogenase superfamily protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; L-iditol 2-dehydrogenase 1622721 10482565 Alide2_1529 Alicycliphilus denitrificans K601 L-iditol 2-dehydrogenase YP_004387441.1 1621651 R 596154 CDS YP_004387442.1 330824139 10482566 complement(1622739..1624226) 1 NC_015422.1 PFAM: Aldehyde dehydrogenase domain; KEGG: bur:Bcep18194_C6756 aldehyde dehydrogenase (acceptor); aldehyde dehydrogenase 1624226 10482566 Alide2_1530 Alicycliphilus denitrificans K601 aldehyde dehydrogenase YP_004387442.1 1622739 R 596154 CDS YP_004387443.1 330824140 10482567 complement(1624234..1624443) 1 NC_015422.1 hypothetical protein 1624443 10482567 Alide2_1531 Alicycliphilus denitrificans K601 hypothetical protein YP_004387443.1 1624234 R 596154 CDS YP_004387444.1 330824141 10482568 complement(1624626..1625597) 1 NC_015422.1 KEGG: bbr:BB0625 hypothetical protein; hypothetical protein 1625597 10482568 Alide2_1532 Alicycliphilus denitrificans K601 hypothetical protein YP_004387444.1 1624626 R 596154 CDS YP_004387445.1 330824142 10482569 complement(1625621..1627027) 1 NC_015422.1 PFAM: MmgE/PrpD; KEGG: bpa:BPP0622 hypothetical protein; MmgE/PrpD family protein 1627027 10482569 Alide2_1533 Alicycliphilus denitrificans K601 MmgE/PrpD family protein YP_004387445.1 1625621 R 596154 CDS YP_004387446.1 330824143 10482570 complement(1627098..1628576) 1 NC_015422.1 KEGG: bur:Bcep18194_C7305 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain; betaine aldehyde dehydrogenase 1628576 10482570 Alide2_1534 Alicycliphilus denitrificans K601 betaine aldehyde dehydrogenase YP_004387446.1 1627098 R 596154 CDS YP_004387447.1 330824144 10482571 complement(1628665..1630158) 1 NC_015422.1 KEGG: bur:Bcep18194_C7306 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain; betaine aldehyde dehydrogenase 1630158 10482571 Alide2_1535 Alicycliphilus denitrificans K601 betaine aldehyde dehydrogenase YP_004387447.1 1628665 R 596154 CDS YP_004387448.1 330824145 10482572 complement(1630254..1631063) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: bbr:BB0629 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1631063 10482572 Alide2_1536 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387448.1 1630254 R 596154 CDS YP_004387449.1 330824146 10482573 complement(1631170..1631655) 1 NC_015422.1 PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: aav:Aave_4649 protein of unknown function DUF894, DitE; hypothetical protein 1631655 10482573 Alide2_1537 Alicycliphilus denitrificans K601 hypothetical protein YP_004387449.1 1631170 R 596154 CDS YP_004387450.1 330824147 10482574 complement(1631697..1632752) 1 NC_015422.1 PFAM: Porin, Gram-negative type; KEGG: bcm:Bcenmc03_6621 porin; porin 1632752 10482574 Alide2_1538 Alicycliphilus denitrificans K601 porin YP_004387450.1 1631697 R 596154 CDS YP_004387451.1 330824148 10482575 complement(1632817..1633785) 1 NC_015422.1 KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein 1633785 10482575 Alide2_1539 Alicycliphilus denitrificans K601 hypothetical protein YP_004387451.1 1632817 R 596154 CDS YP_004387452.1 330824149 10482576 1634384..1635247 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dac:Daci_0260 inner-membrane translocator; ABC transporter permease 1635247 10482576 Alide2_1540 Alicycliphilus denitrificans K601 ABC transporter permease YP_004387452.1 1634384 D 596154 CDS YP_004387453.1 330824150 10482577 1635248..1636222 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dac:Daci_0261 inner-membrane translocator; ABC transporter permease 1636222 10482577 Alide2_1541 Alicycliphilus denitrificans K601 ABC transporter permease YP_004387453.1 1635248 D 596154 CDS YP_004387454.1 330824151 10482578 1636209..1636973 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dac:Daci_0262 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase 1636973 10482578 Alide2_1542 Alicycliphilus denitrificans K601 sulfate-transporting ATPase YP_004387454.1 1636209 D 596154 CDS YP_004387455.1 330824152 10482579 1636960..1637667 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dac:Daci_0263 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 1637667 10482579 Alide2_1543 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004387455.1 1636960 D 596154 CDS YP_004387456.1 330824153 10482580 1637712..1638878 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0264 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1638878 10482580 Alide2_1544 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004387456.1 1637712 D 596154 CDS YP_004387457.1 330824154 10482581 complement(1639019..1640719) 1 NC_015422.1 KEGG: tin:Tint_1587 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 1640719 10482581 Alide2_1545 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004387457.1 1639019 R 596154 CDS YP_004387458.1 330824155 10482582 complement(1640729..1641955) 1 NC_015422.1 KEGG: tin:Tint_1589 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; isovaleryl-CoA dehydrogenase 1641955 10482582 Alide2_1546 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004387458.1 1640729 R 596154 CDS YP_004387459.1 330824156 10482583 complement(1641978..1642751) 1 NC_015422.1 KEGG: dac:Daci_0266 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 1642751 10482583 Alide2_1547 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004387459.1 1641978 R 596154 CDS YP_004387460.1 330824157 10482584 complement(1643004..1643801) 1 NC_015422.1 KEGG: reh:H16_A2948 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 1643801 10482584 Alide2_1548 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004387460.1 1643004 R 596154 CDS YP_004387461.1 330824158 10482585 1643883..1644155 1 NC_015422.1 PFAM: Histone-like nucleoid-structuring protein H-NS; KEGG: ctt:CtCNB1_0646 histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 1644155 10482585 Alide2_1549 Alicycliphilus denitrificans K601 histone family protein nucleoid-structuring protein H-NS YP_004387461.1 1643883 D 596154 CDS YP_004387462.1 330824159 10482586 complement(1644171..1645400) 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: azo:azo3693 hypothetical protein; major facilitator superfamily protein 1645400 10482586 Alide2_1550 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004387462.1 1644171 R 596154 CDS YP_004387463.1 330824160 10482588 complement(1646379..1647326) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: pol:Bpro_0754 integrase catalytic subunit; integrase catalytic subunit 1647326 10482588 Alide2_1551 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004387463.1 1646379 R 596154 CDS YP_004387464.1 330824161 10482589 complement(1647481..1649358) 1 NC_015422.1 manually curated; KEGG: bxe:Bxe_A1801 hypothetical protein; hypothetical protein 1649358 10482589 Alide2_1552 Alicycliphilus denitrificans K601 hypothetical protein YP_004387464.1 1647481 R 596154 CDS YP_004387465.1 330824162 10482590 1651396..1651719 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1651719 10482590 Alide2_1554 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004387465.1 1651396 D 596154 CDS YP_004387466.1 330824163 10482592 complement(1653251..1654213) 1 NC_015422.1 PFAM: Transposase, IS4-like; KEGG: bmj:BMULJ_05861 ISBmu20 transposase; transposase IS4 family protein 1654213 10482592 Alide2_1556 Alicycliphilus denitrificans K601 transposase IS4 family protein YP_004387466.1 1653251 R 596154 CDS YP_004387467.1 330824164 10482593 complement(1654411..1655379) 1 NC_015422.1 PFAM: Transposase, IS4-like; KEGG: axy:AXYL_01136 transposase, IS4 family protein 1; transposase IS4 family protein 1655379 10482593 Alide2_1557 Alicycliphilus denitrificans K601 transposase IS4 family protein YP_004387467.1 1654411 R 596154 CDS YP_004387468.1 330824165 10482595 1655594..1655929 1 NC_015422.1 hypothetical protein 1655929 10482595 Alide2_1559 Alicycliphilus denitrificans K601 hypothetical protein YP_004387468.1 1655594 D 596154 CDS YP_004387469.1 330824166 10482596 complement(1655898..1656842) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: xop:PXO_02075 IS1112 transposase; integrase catalytic subunit 1656842 10482596 Alide2_1560 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004387469.1 1655898 R 596154 CDS YP_004387470.1 330824167 10482598 complement(1657385..1657603) 1 NC_015422.1 PFAM: Protein of unknown function DUF2274; KEGG: pap:PSPA7_3696 conjugal transfer protein; hypothetical protein 1657603 10482598 Alide2_1562 Alicycliphilus denitrificans K601 hypothetical protein YP_004387470.1 1657385 R 596154 CDS YP_004387471.1 330824168 10482599 complement(1657600..1658886) 1 NC_015422.1 PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: pap:PSPA7_3697 conjugation TrbI family protein; conjugation TrbI family protein 1658886 10482599 Alide2_1563 Alicycliphilus denitrificans K601 conjugation TrbI family protein YP_004387471.1 1657600 R 596154 CDS YP_004387472.1 330824169 10482600 complement(1658889..1659872) 1 NC_015422.1 KEGG: rme:Rmet_1349 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX; P-type conjugative transfer protein TrbG 1659872 10482600 Alide2_1564 Alicycliphilus denitrificans K601 P-type conjugative transfer protein TrbG YP_004387472.1 1658889 R 596154 CDS YP_004387473.1 330824170 10482601 complement(1659869..1660573) 1 NC_015422.1 KEGG: pap:PSPA7_3699 conjugal transfer protein TrbF; conjugal transfer protein TrbF 1660573 10482601 Alide2_1565 Alicycliphilus denitrificans K601 conjugal transfer protein TrbF YP_004387473.1 1659869 R 596154 CDS YP_004387474.1 330824171 10482602 complement(1660586..1661971) 1 NC_015422.1 KEGG: tgr:Tgr7_1901 conjugal transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6; P-type conjugative transfer protein TrbL 1661971 10482602 Alide2_1566 Alicycliphilus denitrificans K601 P-type conjugative transfer protein TrbL YP_004387474.1 1660586 R 596154 CDS YP_004387475.1 330824172 10482603 complement(1661968..1662288) 1 NC_015422.1 KEGG: pap:PSPA7_3701 putative lipoprotein; hypothetical protein 1662288 10482603 Alide2_1567 Alicycliphilus denitrificans K601 hypothetical protein YP_004387475.1 1661968 R 596154 CDS YP_004387476.1 330824173 10482604 complement(1662301..1663026) 1 NC_015422.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pap:PSPA7_3702 conjugal transfer protein TrbJ; P-type conjugative transfer protein TrbJ 1663026 10482604 Alide2_1568 Alicycliphilus denitrificans K601 P-type conjugative transfer protein TrbJ YP_004387476.1 1662301 R 596154 CDS YP_004387477.1 330824174 10482605 complement(1663023..1665476) 1 NC_015422.1 KEGG: pap:PSPA7_3703 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; SMART: ATPase, AAA+ type, core; type IV transporter system protein VirB 1665476 10482605 Alide2_1569 Alicycliphilus denitrificans K601 type IV transporter system protein VirB YP_004387477.1 1663023 R 596154 CDS YP_004387478.1 330824175 10482606 complement(1665492..1665764) 1 NC_015422.1 KEGG: pap:PSPA7_3704 conjugal transfer protein; conjugal transfer protein 1665764 10482606 Alide2_1570 Alicycliphilus denitrificans K601 conjugal transfer protein YP_004387478.1 1665492 R 596154 CDS YP_004387479.1 330824176 10482607 complement(1665761..1666144) 1 NC_015422.1 PFAM: Conjugal transfer,TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC; conjugal transfer protein Trbc 1666144 10482607 Alide2_1571 Alicycliphilus denitrificans K601 conjugal transfer protein Trbc YP_004387479.1 1665761 R 596154 CDS YP_004387480.1 330824177 10482608 complement(1666141..1667193) 1 NC_015422.1 KEGG: pap:PSPA7_3706 P-type conjugative transfer ATPase TrbB; TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E; P-type conjugative transfer ATPase TrbB 1667193 10482608 Alide2_1572 Alicycliphilus denitrificans K601 P-type conjugative transfer ATPase TrbB YP_004387480.1 1666141 R 596154 CDS YP_004387481.1 330824178 10482609 complement(1667190..1667654) 1 NC_015422.1 PFAM: CopG-like DNA-binding; KEGG: dac:Daci_0439 CopG/DNA-binding domain-containing protein; CopG family transcriptional regulator 1667654 10482609 Alide2_1573 Alicycliphilus denitrificans K601 CopG family transcriptional regulator YP_004387481.1 1667190 R 596154 CDS YP_004387482.1 330824179 10482610 complement(1667651..1669651) 1 NC_015422.1 PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: pau:PA14_30960 conjugal transfer coupling protein TraG; TRAG family protein 1669651 10482610 Alide2_1574 Alicycliphilus denitrificans K601 TRAG family protein YP_004387482.1 1667651 R 596154 CDS YP_004387483.1 330824180 10482611 complement(1669887..1670165) 1 NC_015422.1 KEGG: pap:PSPA7_3722 putative lipoprotein; hypothetical protein 1670165 10482611 Alide2_1575 Alicycliphilus denitrificans K601 hypothetical protein YP_004387483.1 1669887 R 596154 CDS YP_004387484.1 330824181 10482612 complement(1670162..1671106) 1 NC_015422.1 KEGG: bpt:Bpet2202 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; LysR family transcriptional regulator 1671106 10482612 Alide2_1576 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387484.1 1670162 R 596154 CDS YP_004387485.1 330824182 10482613 complement(1671209..1672462) 1 NC_015422.1 PFAM: Monooxygenase, FAD-binding; KEGG: ami:Amir_4339 monooxygenase FAD-binding; monooxygenase FAD-binding protein 1672462 10482613 Alide2_1577 Alicycliphilus denitrificans K601 monooxygenase FAD-binding protein YP_004387485.1 1671209 R 596154 CDS YP_004387486.1 330824183 10482614 complement(1672473..1673990) 1 NC_015422.1 KEGG: bbr:BB2379 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 1673990 10482614 Alide2_1578 Alicycliphilus denitrificans K601 NodT family RND efflux system outer membrane lipoprotein YP_004387486.1 1672473 R 596154 CDS YP_004387487.1 330824184 10482615 complement(1674003..1675118) 1 NC_015422.1 PFAM: ABC-2 type transporter; KEGG: abc:ACICU_01702 ABC-type multidrug transport system, permease component; ABC transporter 1675118 10482615 Alide2_1579 Alicycliphilus denitrificans K601 ABC transporter YP_004387487.1 1674003 R 596154 CDS YP_004387488.1 330824185 10482616 complement(1675124..1676266) 1 NC_015422.1 PFAM: ABC-2 type transporter; KEGG: bpa:BPP1316 hypothetical protein; ABC transporter 1676266 10482616 Alide2_1580 Alicycliphilus denitrificans K601 ABC transporter YP_004387488.1 1675124 R 596154 CDS YP_004387489.1 330824186 10482617 complement(1676263..1678041) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: pag:PLES_25911 ATP-binding protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase, polyamine-transporting ATPase 1678041 10482617 Alide2_1581 Alicycliphilus denitrificans K601 sulfate-transporting ATPase, polyamine-transporting ATPase YP_004387489.1 1676263 R 596154 CDS YP_004387490.1 330824187 10482618 complement(1678038..1679036) 1 NC_015422.1 PFAM: Secretion protein HlyD; KEGG: bbr:BB2383 HlyD family secretion protein; secretion protein HlyD family protein 1679036 10482618 Alide2_1582 Alicycliphilus denitrificans K601 secretion protein HlyD family protein YP_004387490.1 1678038 R 596154 CDS YP_004387491.1 330824188 10482619 1679163..1679855 1 NC_015422.1 PFAM: Transcription regulator YbiH, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ppg:PputGB1_3284 TetR family transcriptional regulator; TetR family transcriptional regulator 1679855 10482619 Alide2_1583 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004387491.1 1679163 D 596154 CDS YP_004387492.1 330824189 10482620 1679860..1681881 1 NC_015422.1 KEGG: sml:Smlt1841 hypothetical protein; hypothetical protein 1681881 10482620 Alide2_1584 Alicycliphilus denitrificans K601 hypothetical protein YP_004387492.1 1679860 D 596154 CDS YP_004387493.1 330824190 10482621 complement(1681968..1683965) 1 NC_015422.1 KEGG: pap:PSPA7_3726 hypothetical protein; hypothetical protein 1683965 10482621 Alide2_1585 Alicycliphilus denitrificans K601 hypothetical protein YP_004387493.1 1681968 R 596154 CDS YP_004387494.1 330824191 10482622 complement(1683962..1684417) 1 NC_015422.1 manually curated; KEGG: sml:Smlt1309 hypothetical protein; hypothetical protein 1684417 10482622 Alide2_1586 Alicycliphilus denitrificans K601 hypothetical protein YP_004387494.1 1683962 R 596154 CDS YP_004387495.1 330824192 10482623 complement(1684414..1685001) 1 NC_015422.1 PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase; peptidase S26 1685001 10482623 Alide2_1587 Alicycliphilus denitrificans K601 peptidase S26 YP_004387495.1 1684414 R 596154 CDS YP_004387496.1 330824193 10482624 complement(1684998..1685543) 1 NC_015422.1 KEGG: rme:Rmet_1257 hypothetical protein; hypothetical protein 1685543 10482624 Alide2_1588 Alicycliphilus denitrificans K601 hypothetical protein YP_004387496.1 1684998 R 596154 CDS YP_004387497.1 330824194 10482625 complement(1685540..1685824) 1 NC_015422.1 KEGG: bpt:Bpet2187 hypothetical protein; hypothetical protein 1685824 10482625 Alide2_1589 Alicycliphilus denitrificans K601 hypothetical protein YP_004387497.1 1685540 R 596154 CDS YP_004387498.1 330824195 10482626 complement(1685821..1686459) 1 NC_015422.1 KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase; manually curated; PFAM: Cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 1686459 10482626 Alide2_1590 Alicycliphilus denitrificans K601 Cobyrinic acid ac-diamide synthase YP_004387498.1 1685821 R 596154 CDS YP_004387499.1 330824196 10482627 complement(1686713..1687570) 1 NC_015422.1 PFAM: Replication initiator protein A; KEGG: dia:Dtpsy_3526 putative replication initiator and transcription repressor protein; replication initiator protein A 1687570 10482627 Alide2_1591 Alicycliphilus denitrificans K601 replication initiator protein A YP_004387499.1 1686713 R 596154 CDS YP_004387500.1 330824197 10482628 complement(1687597..1687878) 1 NC_015422.1 KEGG: ajs:Ajs_2652 hypothetical protein; hypothetical protein 1687878 10482628 Alide2_1592 Alicycliphilus denitrificans K601 hypothetical protein YP_004387500.1 1687597 R 596154 CDS YP_004387501.1 330824198 10482629 complement(1687963..1688736) 1 NC_015422.1 PFAM: Protein of unknown function DUF2285; KEGG: dac:Daci_0459 hypothetical protein; hypothetical protein 1688736 10482629 Alide2_1593 Alicycliphilus denitrificans K601 hypothetical protein YP_004387501.1 1687963 R 596154 CDS YP_004387502.1 330824199 10482630 complement(1689046..1689549) 1 NC_015422.1 manually curated; KEGG: rme:Rmet_1250 hypothetical protein; hypothetical protein 1689549 10482630 Alide2_1594 Alicycliphilus denitrificans K601 hypothetical protein YP_004387502.1 1689046 R 596154 CDS YP_004387503.1 330824200 10482631 1689637..1689942 1 NC_015422.1 KEGG: rme:Rmet_1249 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 1689942 10482631 Alide2_1595 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004387503.1 1689637 D 596154 CDS YP_004387504.1 330824201 10482632 complement(1690006..1690359) 1 NC_015422.1 KEGG: ajs:Ajs_2644 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF736; hypothetical protein 1690359 10482632 Alide2_1596 Alicycliphilus denitrificans K601 hypothetical protein YP_004387504.1 1690006 R 596154 CDS YP_004387505.1 330824202 10482633 1691106..1691435 1 NC_015422.1 SMART: HTH transcriptional regulator, ArsR; KEGG: bpt:Bpet1026 ArsR family transcriptional regulator; regulatory protein ArsR 1691435 10482633 Alide2_1597 Alicycliphilus denitrificans K601 regulatory protein ArsR YP_004387505.1 1691106 D 596154 CDS YP_004387506.1 330824203 10482634 1691449..1691919 1 NC_015422.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_0488 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 1691919 10482634 Alide2_1598 Alicycliphilus denitrificans K601 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004387506.1 1691449 D 596154 CDS YP_004387507.1 330824204 10482635 1691932..1692429 1 NC_015422.1 KEGG: bpt:Bpet1024 hypothetical protein; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase 1692429 10482635 Alide2_1599 Alicycliphilus denitrificans K601 protein tyrosine phosphatase YP_004387507.1 1691932 D 596154 CDS YP_004387508.1 330824205 10482636 1692440..1693525 1 NC_015422.1 KEGG: dac:Daci_0490 arsenical-resistance protein; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter; arsenical-resistance protein 1693525 10482636 Alide2_1600 Alicycliphilus denitrificans K601 arsenical-resistance protein YP_004387508.1 1692440 D 596154 CDS YP_004387509.1 330824206 10482637 1693543..1693965 1 NC_015422.1 TIGRFAM: Arsenate reductase; KEGG: rpf:Rpic12D_0647 arsenate reductase; PFAM: Arsenate reductase-like; arsenate reductase 1693965 10482637 Alide2_1601 Alicycliphilus denitrificans K601 arsenate reductase YP_004387509.1 1693543 D 596154 CDS YP_004387510.1 330824207 10482638 1694064..1694366 1 NC_015422.1 PFAM: Transcription regulator PadR N-terminal-like; KEGG: oan:Oant_4665 PadR-like family transcriptional regulator; PadR-like family transcriptional regulator 1694366 10482638 Alide2_1602 Alicycliphilus denitrificans K601 PadR-like family transcriptional regulator YP_004387510.1 1694064 D 596154 CDS YP_004387511.1 330824208 10482639 1694363..1695592 1 NC_015422.1 KEGG: bav:BAV1573 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter; chromate transporter 1695592 10482639 Alide2_1603 Alicycliphilus denitrificans K601 chromate transporter YP_004387511.1 1694363 D 596154 CDS YP_004387512.1 330824209 10482640 1695598..1696128 1 NC_015422.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: rme:Rmet_1246 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1696128 10482640 Alide2_1604 Alicycliphilus denitrificans K601 N-acetyltransferase GCN5 YP_004387512.1 1695598 D 596154 CDS YP_004387513.1 330824210 10482641 complement(1696336..1698387) 1 NC_015422.1 KEGG: rme:Rmet_1245 ParB family protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; ParB domain-containing protein nuclease 1698387 10482641 Alide2_1605 Alicycliphilus denitrificans K601 ParB domain-containing protein nuclease YP_004387513.1 1696336 R 596154 CDS YP_004387514.1 330824211 10482642 complement(1698465..1699289) 1 NC_015422.1 PFAM: Protein of unknown function DUF932; KEGG: ajs:Ajs_2639 hypothetical protein; hypothetical protein 1699289 10482642 Alide2_1606 Alicycliphilus denitrificans K601 hypothetical protein YP_004387514.1 1698465 R 596154 CDS YP_004387515.1 330824212 10482643 1699816..1700484 1 NC_015422.1 KEGG: dia:Dtpsy_1275 hypothetical protein; hypothetical protein 1700484 10482643 Alide2_1607 Alicycliphilus denitrificans K601 hypothetical protein YP_004387515.1 1699816 D 596154 CDS YP_004387516.1 330824213 10482644 complement(1700515..1700865) 1 NC_015422.1 KEGG: rme:Rmet_3038 hypothetical protein; hypothetical protein 1700865 10482644 Alide2_1608 Alicycliphilus denitrificans K601 hypothetical protein YP_004387516.1 1700515 R 596154 CDS YP_004387517.1 330824214 10482645 complement(1701147..1701653) 1 NC_015422.1 KEGG: tgr:Tgr7_1867 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758; DNA repair protein RadC 1701653 10482645 Alide2_1609 Alicycliphilus denitrificans K601 DNA repair protein RadC YP_004387517.1 1701147 R 596154 CDS YP_004387518.1 330824215 10482646 1702066..1703208 1 NC_015422.1 KEGG: ajs:Ajs_2635 hypothetical protein; hypothetical protein 1703208 10482646 Alide2_1610 Alicycliphilus denitrificans K601 hypothetical protein YP_004387518.1 1702066 D 596154 CDS YP_004387519.1 330824216 10482647 1703212..1703799 1 NC_015422.1 manually curated; KEGG: dia:Dtpsy_1271 hypothetical protein; hypothetical protein 1703799 10482647 Alide2_1611 Alicycliphilus denitrificans K601 hypothetical protein YP_004387519.1 1703212 D 596154 CDS YP_004387520.1 330824217 10482648 1703841..1704326 1 NC_015422.1 PFAM: MTH538 TIR-like domain; KEGG: ajs:Ajs_2632 hypothetical protein; hypothetical protein 1704326 10482648 Alide2_1612 Alicycliphilus denitrificans K601 hypothetical protein YP_004387520.1 1703841 D 596154 CDS YP_004387521.1 330824218 10482649 complement(1704343..1705005) 1 NC_015422.1 PFAM: Uracil-DNA glycosylase-like; KEGG: ajs:Ajs_2631 hypothetical protein; uracil-DNA glycosylase 1705005 10482649 Alide2_1613 Alicycliphilus denitrificans K601 uracil-DNA glycosylase YP_004387521.1 1704343 R 596154 CDS YP_004387522.1 330824219 10482650 complement(1705002..1706138) 1 NC_015422.1 KEGG: ajs:Ajs_2630 hypothetical protein; hypothetical protein 1706138 10482650 Alide2_1614 Alicycliphilus denitrificans K601 hypothetical protein YP_004387522.1 1705002 R 596154 CDS YP_004387523.1 330824220 10482651 complement(1706142..1706768) 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_2629 hypothetical protein; hypothetical protein 1706768 10482651 Alide2_1615 Alicycliphilus denitrificans K601 hypothetical protein YP_004387523.1 1706142 R 596154 CDS YP_004387524.1 330824221 10482652 complement(1706768..1707235) 1 NC_015422.1 PFAM: MTH538 TIR-like domain; KEGG: ajs:Ajs_2628 hypothetical protein; hypothetical protein 1707235 10482652 Alide2_1616 Alicycliphilus denitrificans K601 hypothetical protein YP_004387524.1 1706768 R 596154 CDS YP_004387525.1 330824222 10482653 complement(1707324..1707626) 1 NC_015422.1 KEGG: ajs:Ajs_2627 transcriptional regulator; XRE family transcriptional regulator 1707626 10482653 Alide2_1617 Alicycliphilus denitrificans K601 XRE family transcriptional regulator YP_004387525.1 1707324 R 596154 CDS YP_004387526.1 330824223 10482654 complement(1707610..1707993) 1 NC_015422.1 KEGG: ajs:Ajs_2626 hypothetical protein; hypothetical protein 1707993 10482654 Alide2_1618 Alicycliphilus denitrificans K601 hypothetical protein YP_004387526.1 1707610 R 596154 CDS YP_004387527.1 330824224 10482655 complement(1708133..1709335) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein; integrase family protein 1709335 10482655 Alide2_1619 Alicycliphilus denitrificans K601 integrase family protein YP_004387527.1 1708133 R 596154 CDS YP_004387528.1 330824225 10482656 1709584..1710213 1 NC_015422.1 KEGG: ajs:Ajs_2624 hypothetical protein; hypothetical protein 1710213 10482656 Alide2_1620 Alicycliphilus denitrificans K601 hypothetical protein YP_004387528.1 1709584 D 596154 CDS YP_004387529.1 330824226 10482657 1710338..1712296 1 NC_015422.1 TIGRFAM: Excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; KEGG: dia:Dtpsy_1185 excinuclease ABC subunit C; SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; excinuclease ABC subunit C 1712296 10482657 Alide2_1621 Alicycliphilus denitrificans K601 excinuclease ABC subunit C YP_004387529.1 1710338 D 596154 CDS YP_004387530.1 330824227 10482658 1712326..1712913 1 NC_015422.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: dia:Dtpsy_1186 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1712913 10482658 Alide2_1622 Alicycliphilus denitrificans K601 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_004387530.1 1712326 D 596154 CDS YP_004387531.1 330824228 10482659 1713258..1713530 1 NC_015422.1 KEGG: dia:Dtpsy_1187 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 1713530 10482659 Alide2_1623 Alicycliphilus denitrificans K601 histone family protein DNA-binding protein YP_004387531.1 1713258 D 596154 CDS YP_004387532.1 330824229 10482661 1713680..1715602 1 NC_015422.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_1188 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1715602 10482661 Alide2_1624 Alicycliphilus denitrificans K601 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004387532.1 1713680 D 596154 CDS YP_004387533.1 330824230 10482662 complement(1715960..1717180) 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: mno:Mnod_4450 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1717180 10482662 Alide2_1625 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004387533.1 1715960 R 596154 CDS YP_004387534.1 330824231 10482663 complement(1717307..1718092) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: mlo:mll1009 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1718092 10482663 Alide2_1626 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387534.1 1717307 R 596154 CDS YP_004387535.1 330824232 10482664 1718192..1719553 1 NC_015422.1 KEGG: rxy:Rxyl_1851 phenylacetate-CoA ligase; phenylacetate--CoA ligase 1719553 10482664 Alide2_1627 Alicycliphilus denitrificans K601 phenylacetate--CoA ligase YP_004387535.1 1718192 D 596154 CDS YP_004387536.1 330824233 10482665 1719573..1721153 1 NC_015422.1 KEGG: pol:Bpro_5271 carboxyl transferase; PFAM: Carboxyl transferase; methylcrotonoyl-CoA carboxylase 1721153 10482665 Alide2_1628 Alicycliphilus denitrificans K601 methylcrotonoyl-CoA carboxylase YP_004387536.1 1719573 D 596154 CDS YP_004387537.1 330824234 10482666 1721162..1723168 1 NC_015422.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: pol:Bpro_5270 carbamoyl-phosphate synthase L chain, ATP-binding; SMART: Biotin carboxylase, C-terminal; methylcrotonoyl-CoA carboxylase 1723168 10482666 Alide2_1629 Alicycliphilus denitrificans K601 methylcrotonoyl-CoA carboxylase YP_004387537.1 1721162 D 596154 CDS YP_004387538.1 330824235 10482667 1723184..1724143 1 NC_015422.1 KEGG: pol:Bpro_5269 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase 1724143 10482667 Alide2_1630 Alicycliphilus denitrificans K601 hydroxymethylglutaryl-CoA lyase YP_004387538.1 1723184 D 596154 CDS YP_004387539.1 330824236 10482668 1724194..1725723 1 NC_015422.1 KEGG: rlt:Rleg2_6334 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 1725723 10482668 Alide2_1631 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004387539.1 1724194 D 596154 CDS YP_004387540.1 330824237 10482669 complement(1725773..1726366) 1 NC_015422.1 PFAM: Transcription regulator YsiA, C-terminal; KEGG: azc:AZC_4590 transcriptional regulator; TetR family transcriptional regulator 1726366 10482669 Alide2_1632 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004387540.1 1725773 R 596154 CDS YP_004387541.1 330824238 10482670 complement(1726509..1727345) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1727345 10482670 Alide2_1633 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387541.1 1726509 R 596154 CDS YP_004387542.1 330824239 10482673 1727720..1728625 1 NC_015422.1 TIGRFAM: Cysteine synthase K/M; Cysteine synthase B; KEGG: dia:Dtpsy_2386 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; cysteine synthase 1728625 10482673 Alide2_1635 Alicycliphilus denitrificans K601 cysteine synthase YP_004387542.1 1727720 D 596154 CDS YP_004387543.1 330824240 10482674 1728631..1729194 1 NC_015422.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_2385 NUDIX hydrolase; NUDIX hydrolase 1729194 10482674 Alide2_1636 Alicycliphilus denitrificans K601 NUDIX hydrolase YP_004387543.1 1728631 D 596154 CDS YP_004387544.1 330824241 10482675 1729200..1729427 1 NC_015422.1 PFAM: SirA-like; KEGG: dia:Dtpsy_2384 SirA family protein; SirA-like domain-containing protein 1729427 10482675 Alide2_1637 Alicycliphilus denitrificans K601 SirA-like domain-containing protein YP_004387544.1 1729200 D 596154 CDS YP_004387545.1 330824242 10482676 complement(1729518..1730402) 1 NC_015422.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dia:Dtpsy_2383 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 1730402 10482676 Alide2_1638 Alicycliphilus denitrificans K601 UTP-glucose-1-phosphate uridylyltransferase YP_004387545.1 1729518 R 596154 CDS YP_004387546.1 330824243 10482677 complement(1730510..1733416) 1 NC_015422.1 TIGRFAM: Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; KEGG: ajs:Ajs_2896 valyl-tRNA synthetase; valyl-tRNA synthetase 1733416 10482677 Alide2_1639 Alicycliphilus denitrificans K601 valyl-tRNA synthetase YP_004387546.1 1730510 R 596154 CDS YP_004387547.1 330824244 10482678 complement(1733544..1734149) 1 NC_015422.1 KEGG: pol:Bpro_1263 hypothetical protein; hypothetical protein 1734149 10482678 Alide2_1640 Alicycliphilus denitrificans K601 hypothetical protein YP_004387547.1 1733544 R 596154 CDS YP_004387548.1 330824245 10482679 complement(1734146..1734781) 1 NC_015422.1 PFAM: Copper chaperone SCO1/SenC; KEGG: net:Neut_1585 hypothetical protein; electron transport protein SCO1/SenC 1734781 10482679 Alide2_1641 Alicycliphilus denitrificans K601 electron transport protein SCO1/SenC YP_004387548.1 1734146 R 596154 CDS YP_004387549.1 330824246 10482680 complement(1734789..1735382) 1 NC_015422.1 PFAM: Cytochrome c, class I; KEGG: net:Neut_1584 cytochrome c, class I; cytochrome c class I 1735382 10482680 Alide2_1642 Alicycliphilus denitrificans K601 cytochrome c class I YP_004387549.1 1734789 R 596154 CDS YP_004387550.1 330824247 10482681 complement(1735396..1736043) 1 NC_015422.1 PFAM: Cytochrome c oxidase, monohaem subunit/FixO; KEGG: net:Neut_1583 cytochrome c oxidase, mono-heme subunit/FixO; cytochrome C oxidase mono-heme subunit/FixO 1736043 10482681 Alide2_1643 Alicycliphilus denitrificans K601 cytochrome C oxidase mono-heme subunit/FixO YP_004387550.1 1735396 R 596154 CDS YP_004387551.1 330824248 10482682 complement(1736033..1737688) 1 NC_015422.1 KEGG: net:Neut_1582 cytochrome c oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I; cytochrome-c oxidase 1737688 10482682 Alide2_1644 Alicycliphilus denitrificans K601 cytochrome-c oxidase YP_004387551.1 1736033 R 596154 CDS YP_004387552.1 330824249 10482683 complement(1737942..1739231) 1 NC_015422.1 PFAM: HemY, N-terminal; KEGG: ajs:Ajs_2893 HemY domain-containing protein; HemY domain-containing protein 1739231 10482683 Alide2_1645 Alicycliphilus denitrificans K601 HemY domain-containing protein YP_004387552.1 1737942 R 596154 CDS YP_004387553.1 330824250 10482684 complement(1739257..1740336) 1 NC_015422.1 PFAM: HemX; KEGG: ajs:Ajs_2892 protein of unknown function DUF513, HemX; hemX domain-containing protein 1740336 10482684 Alide2_1646 Alicycliphilus denitrificans K601 hemX domain-containing protein YP_004387553.1 1739257 R 596154 CDS YP_004387554.1 330824251 10482685 complement(1740326..1741150) 1 NC_015422.1 KEGG: ajs:Ajs_2891 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 1741150 10482685 Alide2_1647 Alicycliphilus denitrificans K601 uroporphyrinogen-III synthase YP_004387554.1 1740326 R 596154 CDS YP_004387555.1 330824252 10482686 complement(1741144..1742073) 1 NC_015422.1 PFAM: Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal domain; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; KEGG: dia:Dtpsy_2377 porphobilinogen deaminase; porphobilinogen deaminase 1742073 10482686 Alide2_1648 Alicycliphilus denitrificans K601 porphobilinogen deaminase YP_004387555.1 1741144 R 596154 CDS YP_004387556.1 330824253 10482687 1742193..1745036 1 NC_015422.1 KEGG: dia:Dtpsy_2376 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 1745036 10482687 Alide2_1649 Alicycliphilus denitrificans K601 phosphoenolpyruvate carboxylase YP_004387556.1 1742193 D 596154 CDS YP_004387557.1 330824254 10482688 complement(1745069..1745608) 1 NC_015422.1 PFAM: Flagellar transcriptional activator FlhC; KEGG: ajs:Ajs_2885 transcriptional activator FlhC; flagellar transcriptional activator FlhC 1745608 10482688 Alide2_1650 Alicycliphilus denitrificans K601 flagellar transcriptional activator FlhC YP_004387557.1 1745069 R 596154 CDS YP_004387558.1 330824255 10482689 complement(1745645..1745974) 1 NC_015422.1 PFAM: Flagellar transcriptional activator; KEGG: ajs:Ajs_2884 flagellar transcriptional activator, FlhD subunit; flagellar transcriptional activator 1745974 10482689 Alide2_1651 Alicycliphilus denitrificans K601 flagellar transcriptional activator YP_004387558.1 1745645 R 596154 CDS YP_004387559.1 330824256 10482690 complement(1746201..1746677) 1 NC_015422.1 KEGG: dia:Dtpsy_2370 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein; bacterioferritin 1746677 10482690 Alide2_1652 Alicycliphilus denitrificans K601 bacterioferritin YP_004387559.1 1746201 R 596154 CDS YP_004387560.1 330824257 10482691 1746893..1747468 1 NC_015422.1 TIGRFAM: Peroxiredoxin; KEGG: xtr:100496295 alkyl hydroperoxide reductase subunit C-like; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal; peroxiredoxin 1747468 10482691 Alide2_1653 Alicycliphilus denitrificans K601 peroxiredoxin YP_004387560.1 1746893 D 596154 CDS YP_004387561.1 330824258 10482692 1747564..1749132 1 NC_015422.1 TIGRFAM: Alkyl hydroperoxide reductase, subunit F; KEGG: xtr:100496451 alkyl hydroperoxide reductase subunit F-like; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glutaredoxin; alkyl hydroperoxide reductase subunit F 1749132 10482692 Alide2_1654 Alicycliphilus denitrificans K601 alkyl hydroperoxide reductase subunit F YP_004387561.1 1747564 D 596154 CDS YP_004387562.1 330824259 10482693 1749201..1750658 1 NC_015422.1 KEGG: gpb:HDN1F_12050 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive; catalase 1750658 10482693 Alide2_1655 Alicycliphilus denitrificans K601 catalase YP_004387562.1 1749201 D 596154 CDS YP_004387563.1 330824260 10482694 1750714..1751091 1 NC_015422.1 KEGG: mpt:Mpe_A2670 hypothetical protein; hypothetical protein 1751091 10482694 Alide2_1656 Alicycliphilus denitrificans K601 hypothetical protein YP_004387563.1 1750714 D 596154 CDS YP_004387564.1 330824261 10482695 1751273..1752541 1 NC_015422.1 PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_1332 outer membrane efflux protein; outer membrane efflux protein 1752541 10482695 Alide2_1657 Alicycliphilus denitrificans K601 outer membrane efflux protein YP_004387564.1 1751273 D 596154 CDS YP_004387565.1 330824262 10482696 1752649..1753194 1 NC_015422.1 KEGG: dia:Dtpsy_1144 hypothetical protein; hypothetical protein 1753194 10482696 Alide2_1658 Alicycliphilus denitrificans K601 hypothetical protein YP_004387565.1 1752649 D 596154 CDS YP_004387566.1 330824263 10482697 1753191..1754303 1 NC_015422.1 KEGG: xtr:100489290 hypothetical protein LOC100489290; hypothetical protein 1754303 10482697 Alide2_1659 Alicycliphilus denitrificans K601 hypothetical protein YP_004387566.1 1753191 D 596154 CDS YP_004387567.1 330824264 10482698 1754317..1757436 1 NC_015422.1 KEGG: tmz:Tmz1t_2382 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 1757436 10482698 Alide2_1660 Alicycliphilus denitrificans K601 CzcA family heavy metal efflux pump YP_004387567.1 1754317 D 596154 CDS YP_004387568.1 330824265 10482699 complement(1757470..1758357) 1 NC_015422.1 KEGG: aav:Aave_1381 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted; phosphotransferase ydiA 1758357 10482699 Alide2_1661 Alicycliphilus denitrificans K601 phosphotransferase ydiA YP_004387568.1 1757470 R 596154 CDS YP_004387569.1 330824266 10482700 1758523..1760913 1 NC_015422.1 TIGRFAM: Phosphoenolpyruvate synthase; KEGG: dia:Dtpsy_2366 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme; phosphoenolpyruvate synthase 1760913 10482700 Alide2_1662 Alicycliphilus denitrificans K601 phosphoenolpyruvate synthase YP_004387569.1 1758523 D 596154 CDS YP_004387570.1 330824267 10482701 1760930..1761247 1 NC_015422.1 TIGRFAM: Sodium symporter small subunit, predicted; KEGG: ajs:Ajs_2878 hypothetical protein; solute symporter protein 1761247 10482701 Alide2_1663 Alicycliphilus denitrificans K601 solute symporter protein YP_004387570.1 1760930 D 596154 CDS YP_004387571.1 330824268 10482702 1761240..1763324 1 NC_015422.1 KEGG: dia:Dtpsy_2364 calcium-binding EF-hand-containing protein; TIGRFAM: Sodium/solute symporter, VC2705 subfamily; PFAM: Sodium/solute symporter; sodium symporter protein 1763324 10482702 Alide2_1664 Alicycliphilus denitrificans K601 sodium symporter protein YP_004387571.1 1761240 D 596154 CDS YP_004387572.1 330824269 10482703 1763445..1763903 1 NC_015422.1 KEGG: ajs:Ajs_2876 hypothetical protein; hypothetical protein 1763903 10482703 Alide2_1665 Alicycliphilus denitrificans K601 hypothetical protein YP_004387572.1 1763445 D 596154 CDS YP_004387573.1 330824270 10482704 complement(1763970..1765754) 1 NC_015422.1 KEGG: rpi:Rpic_2638 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 1765754 10482704 Alide2_1666 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004387573.1 1763970 R 596154 CDS YP_004387574.1 330824271 10482705 complement(1765910..1766938) 1 NC_015422.1 KEGG: ppw:PputW619_3351 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; AraC family transcriptional regulator 1766938 10482705 Alide2_1667 Alicycliphilus denitrificans K601 AraC family transcriptional regulator YP_004387574.1 1765910 R 596154 CDS YP_004387575.1 330824272 10482706 1767282..1768496 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0182 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1768496 10482706 Alide2_1668 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004387575.1 1767282 D 596154 CDS YP_004387576.1 330824273 10482707 1768531..1769676 1 NC_015422.1 KEGG: rpi:Rpic_2632 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; long-chain-acyl-CoA dehydrogenase 1769676 10482707 Alide2_1669 Alicycliphilus denitrificans K601 long-chain-acyl-CoA dehydrogenase YP_004387576.1 1768531 D 596154 CDS YP_004387577.1 330824274 10482708 1769673..1770752 1 NC_015422.1 KEGG: rpi:Rpic_2631 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; alpha-methylacyl-CoA racemase 1770752 10482708 Alide2_1670 Alicycliphilus denitrificans K601 alpha-methylacyl-CoA racemase YP_004387577.1 1769673 D 596154 CDS YP_004387578.1 330824275 10482709 1770749..1772422 1 NC_015422.1 KEGG: rpi:Rpic_2630 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 1772422 10482709 Alide2_1671 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004387578.1 1770749 D 596154 CDS YP_004387579.1 330824276 10482710 1772470..1773666 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: rpi:Rpic_2629 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 1773666 10482710 Alide2_1672 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004387579.1 1772470 D 596154 CDS YP_004387580.1 330824277 10482711 1773663..1774439 1 NC_015422.1 PFAM: Crotonase, core; KEGG: rpi:Rpic_2628 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1774439 10482711 Alide2_1673 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387580.1 1773663 D 596154 CDS YP_004387581.1 330824278 10482712 1774471..1775253 1 NC_015422.1 KEGG: rpi:Rpic_2627 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 1775253 10482712 Alide2_1674 Alicycliphilus denitrificans K601 3-hydroxy-2-methylbutyryl-CoA dehydrogenase YP_004387581.1 1774471 D 596154 CDS YP_004387582.1 330824279 10482714 complement(1776637..1777191) 1 NC_015422.1 SMART: Elongation factor P, C-terminal; TIGRFAM: Translation elongation factor P; KEGG: xtr:100493038 elongation factor P-like; HAMAP: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; elongation factor P 1777191 10482714 Alide2_1676 Alicycliphilus denitrificans K601 elongation factor P YP_004387582.1 1776637 R 596154 CDS YP_004387583.1 330824280 10482715 complement(1777351..1778433) 1 NC_015422.1 KEGG: ajs:Ajs_2874 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP015557; PFAM: Uncharacterised conserved protein UCP015557; hypothetical protein 1778433 10482715 Alide2_1677 Alicycliphilus denitrificans K601 hypothetical protein YP_004387583.1 1777351 R 596154 CDS YP_004387584.1 330824281 10482716 complement(1778430..1779332) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_2873 LysR family transcriptional regulator; LysR family transcriptional regulator 1779332 10482716 Alide2_1678 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387584.1 1778430 R 596154 CDS YP_004387585.1 330824282 10482717 1779460..1780665 1 NC_015422.1 KEGG: dia:Dtpsy_2359 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 1780665 10482717 Alide2_1679 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387585.1 1779460 D 596154 CDS YP_004387586.1 330824283 10482718 1780662..1781633 1 NC_015422.1 KEGG: dia:Dtpsy_2358 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase 1781633 10482718 Alide2_1680 Alicycliphilus denitrificans K601 hydroxymethylglutaryl-CoA lyase YP_004387586.1 1780662 D 596154 CDS YP_004387587.1 330824284 10482719 1781676..1782665 1 NC_015422.1 KEGG: dia:Dtpsy_2357 hypothetical protein; hypothetical protein 1782665 10482719 Alide2_1681 Alicycliphilus denitrificans K601 hypothetical protein YP_004387587.1 1781676 D 596154 CDS YP_004387588.1 330824285 10482720 1782710..1783693 1 NC_015422.1 KEGG: ajs:Ajs_2869 hypothetical protein; hypothetical protein 1783693 10482720 Alide2_1682 Alicycliphilus denitrificans K601 hypothetical protein YP_004387588.1 1782710 D 596154 CDS YP_004387589.1 330824286 10482721 complement(1783728..1784654) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_0157 L-carnitine dehydratase/bile acid-inducible; LysR family transcriptional regulator 1784654 10482721 Alide2_1683 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387589.1 1783728 R 596154 CDS YP_004387590.1 330824287 10482722 1784746..1785957 1 NC_015422.1 KEGG: xtr:100493857 uncharacterized protein yfdE-like; PFAM: CoA-transferase family III; formyl-CoA transferase 1785957 10482722 Alide2_1684 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387590.1 1784746 D 596154 CDS YP_004387591.1 330824288 10482723 1785996..1787153 1 NC_015422.1 KEGG: xtr:100494035 short-chain specific acyl-CoA dehydrogenase, mitochondrial-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 1787153 10482723 Alide2_1685 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004387591.1 1785996 D 596154 CDS YP_004387592.1 330824289 10482724 1787361..1788326 1 NC_015422.1 KEGG: aav:Aave_2969 substrate-binding region of ABC-type glycine betaine transport system; glycine/betaine ABC transporter substrate-binding protein 1788326 10482724 Alide2_1686 Alicycliphilus denitrificans K601 glycine/betaine ABC transporter substrate-binding protein YP_004387592.1 1787361 D 596154 CDS YP_004387593.1 330824290 10482725 1788352..1789191 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: xtr:100494207 probable ABC transporter permease protein BruAb2_1124-like; ABC transporter permease 1789191 10482725 Alide2_1687 Alicycliphilus denitrificans K601 ABC transporter permease YP_004387593.1 1788352 D 596154 CDS YP_004387594.1 330824291 10482726 1789191..1789973 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: xtr:100494366 uncharacterized ABC transporter ATP-binding protein MJ0412-like; SMART: ATPase, AAA+ type, core; taurine-transporting ATPase 1789973 10482726 Alide2_1688 Alicycliphilus denitrificans K601 taurine-transporting ATPase YP_004387594.1 1789191 D 596154 CDS YP_004387595.1 330824292 10482727 1789990..1790772 1 NC_015422.1 TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: aav:Aave_2966 histidine utilization repressor; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 1790772 10482727 Alide2_1689 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004387595.1 1789990 D 596154 CDS YP_004387596.1 330824293 10482728 1790836..1792425 1 NC_015422.1 PFAM: Phenylalanine/histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; HAMAP: Histidine ammonia-lyase; KEGG: aav:Aave_2965 histidine ammonia-lyase; histidine ammonia-lyase 1792425 10482728 Alide2_1690 Alicycliphilus denitrificans K601 histidine ammonia-lyase YP_004387596.1 1790836 D 596154 CDS YP_004387597.1 330824294 10482729 complement(1792426..1793151) 1 NC_015422.1 TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: ctt:CtCNB1_0165 transcriptional regulator, histidine; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 1793151 10482729 Alide2_1691 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004387597.1 1792426 R 596154 CDS YP_004387598.1 330824295 10482730 1793294..1794772 1 NC_015422.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: ctt:CtCNB1_0166 cytosine/purines/uracil permease; cytosine/purines uracil thiamine allantoin permease 1794772 10482730 Alide2_1692 Alicycliphilus denitrificans K601 cytosine/purines uracil thiamine allantoin permease YP_004387598.1 1793294 D 596154 CDS YP_004387599.1 330824296 10482731 1794816..1796537 1 NC_015422.1 TIGRFAM: Urocanase; KEGG: dac:Daci_0150 urocanate hydratase; PFAM: Urocanase; urocanate hydratase 1796537 10482731 Alide2_1693 Alicycliphilus denitrificans K601 urocanate hydratase YP_004387599.1 1794816 D 596154 CDS YP_004387600.1 330824297 10482732 1796626..1797405 1 NC_015422.1 KEGG: pol:Bpro_1041 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 1797405 10482732 Alide2_1694 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004387600.1 1796626 D 596154 CDS YP_004387601.1 330824298 10482733 1797450..1798205 1 NC_015422.1 KEGG: pol:Bpro_1040 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor; ABC transporter substrate-binding protein 1798205 10482733 Alide2_1695 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004387601.1 1797450 D 596154 CDS YP_004387602.1 330824299 10482734 1798220..1798888 1 NC_015422.1 KEGG: pol:Bpro_1039 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease 1798888 10482734 Alide2_1696 Alicycliphilus denitrificans K601 polar amino acid ABC transporter permease YP_004387602.1 1798220 D 596154 CDS YP_004387603.1 330824300 10482735 1798885..1799667 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: pol:Bpro_1038 ABC transporter related; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase 1799667 10482735 Alide2_1697 Alicycliphilus denitrificans K601 Fe(3+)-transporting ATPase YP_004387603.1 1798885 D 596154 CDS YP_004387604.1 330824301 10482736 1799673..1800275 1 NC_015422.1 PFAM: Uncharacterised protein family HutD; KEGG: aav:Aave_2962 hypothetical protein; HutD family protein 1800275 10482736 Alide2_1698 Alicycliphilus denitrificans K601 HutD family protein YP_004387604.1 1799673 D 596154 CDS YP_004387605.1 330824302 10482737 1800601..1801839 1 NC_015422.1 TIGRFAM: Imidazolonepropionase; KEGG: pol:Bpro_1035 imidazolonepropionase; PFAM: Amidohydrolase 1; imidazolonepropionase 1801839 10482737 Alide2_1699 Alicycliphilus denitrificans K601 imidazolonepropionase YP_004387605.1 1800601 D 596154 CDS YP_004387606.1 330824303 10482738 1801844..1803277 1 NC_015422.1 KEGG: dac:Daci_0155 N-formimino-L-glutamate deiminase; TIGRFAM: Formiminoglutamate deiminase; PFAM: Amidohydrolase 1; formiminoglutamate deiminase 1803277 10482738 Alide2_1700 Alicycliphilus denitrificans K601 formiminoglutamate deiminase YP_004387606.1 1801844 D 596154 CDS YP_004387607.1 330824304 10482739 1803306..1804127 1 NC_015422.1 KEGG: aav:Aave_2959 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate deformylase; PFAM: N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 1804127 10482739 Alide2_1701 Alicycliphilus denitrificans K601 N-formylglutamate amidohydrolase YP_004387607.1 1803306 D 596154 CDS YP_004387608.1 330824305 10482740 complement(1804124..1804987) 1 NC_015422.1 TIGRFAM: Glutamate racemase; KEGG: ajs:Ajs_2867 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 1804987 10482740 Alide2_1702 Alicycliphilus denitrificans K601 glutamate racemase YP_004387608.1 1804124 R 596154 CDS YP_004387609.1 330824306 10482741 complement(1805028..1805651) 1 NC_015422.1 PFAM: Protein of unknown function DUF938; KEGG: dia:Dtpsy_2352 protein of unknown function DUF938; hypothetical protein 1805651 10482741 Alide2_1703 Alicycliphilus denitrificans K601 hypothetical protein YP_004387609.1 1805028 R 596154 CDS YP_004387610.1 330824307 10482742 complement(1805852..1806655) 1 NC_015422.1 KEGG: aav:Aave_2080 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: Aldehyde-lyase domain; 4-hydroxy-2-oxovalerate aldolase 1806655 10482742 Alide2_1704 Alicycliphilus denitrificans K601 4-hydroxy-2-oxovalerate aldolase YP_004387610.1 1805852 R 596154 CDS YP_004387611.1 330824308 10482743 complement(1806662..1808131) 1 NC_015422.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: dac:Daci_2346 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; succinate-semialdehyde dehydrogenase 1808131 10482743 Alide2_1705 Alicycliphilus denitrificans K601 succinate-semialdehyde dehydrogenase YP_004387611.1 1806662 R 596154 CDS YP_004387612.1 330824309 10482744 complement(1808198..1809721) 1 NC_015422.1 PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; KEGG: ctt:CtCNB1_3469 outer membrane protein precursor; SMART: SAF domain; galactarate dehydratase 1809721 10482744 Alide2_1706 Alicycliphilus denitrificans K601 galactarate dehydratase YP_004387612.1 1808198 R 596154 CDS YP_004387613.1 330824310 10482745 complement(1809718..1810707) 1 NC_015422.1 KEGG: ctt:CtCNB1_3468 TctC; hypothetical protein 1810707 10482745 Alide2_1707 Alicycliphilus denitrificans K601 hypothetical protein YP_004387613.1 1809718 R 596154 CDS YP_004387614.1 330824311 10482746 1810807..1811769 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_2084 LysR family transcriptional regulator; LysR family transcriptional regulator 1811769 10482746 Alide2_1708 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387614.1 1810807 D 596154 CDS YP_004387615.1 330824312 10482747 complement(1811771..1812790) 1 NC_015422.1 PFAM: Patatin/Phospholipase A2-related; KEGG: dac:Daci_3706 patatin; patatin 1812790 10482747 Alide2_1709 Alicycliphilus denitrificans K601 patatin YP_004387615.1 1811771 R 596154 CDS YP_004387616.1 330824313 10482748 complement(1812962..1814053) 1 NC_015422.1 TIGRFAM: Tartrate dehydrogenase; KEGG: aav:Aave_2087 tartrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1814053 10482748 Alide2_1710 Alicycliphilus denitrificans K601 tartrate dehydrogenase YP_004387616.1 1812962 R 596154 CDS YP_004387617.1 330824314 10482749 1814094..1815050 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2361 LysR family transcriptional regulator; LysR family transcriptional regulator 1815050 10482749 Alide2_1711 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387617.1 1814094 D 596154 CDS YP_004387618.1 330824315 10482750 complement(1815067..1816068) 1 NC_015422.1 KEGG: dia:Dtpsy_0973 hypothetical protein; hypothetical protein 1816068 10482750 Alide2_1712 Alicycliphilus denitrificans K601 hypothetical protein YP_004387618.1 1815067 R 596154 CDS YP_004387619.1 330824316 10482751 complement(1816137..1816277) 1 NC_015422.1 hypothetical protein 1816277 10482751 Alide2_1713 Alicycliphilus denitrificans K601 hypothetical protein YP_004387619.1 1816137 R 596154 CDS YP_004387620.1 330824317 10482752 complement(1816411..1816548) 1 NC_015422.1 KEGG: abb:ABBFA_001155 transcriptional regulatory protein QseB; transcriptional regulatory protein QseB 1816548 10482752 Alide2_1714 Alicycliphilus denitrificans K601 transcriptional regulatory protein QseB YP_004387620.1 1816411 R 596154 CDS YP_004387621.1 330824318 10482753 1816723..1817058 1 NC_015422.1 KEGG: pol:Bpro_4958 histone-like DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 1817058 10482753 Alide2_1715 Alicycliphilus denitrificans K601 histone family protein DNA-binding protein YP_004387621.1 1816723 D 596154 CDS YP_004387622.1 330824319 10482754 1817156..1817638 1 NC_015422.1 KEGG: pol:Bpro_5021 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 1817638 10482754 Alide2_1716 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004387622.1 1817156 D 596154 CDS YP_004387623.1 330824320 10482755 complement(1817975..1818871) 1 NC_015422.1 KEGG: tmz:Tmz1t_1027 transcriptional regulator, LysR family; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; LysR family transcriptional regulator 1818871 10482755 Alide2_1717 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387623.1 1817975 R 596154 CDS YP_004387624.1 330824321 10482757 complement(1819136..1819882) 1 NC_015422.1 SMART: Polyketide synthase/Fatty acid synthase, KR; TIGRFAM: Acetoacetyl-CoA reductase; KEGG: rme:Rmet_1333 acetoacetyl-CoA reductase; PFAM: Short-chain dehydrogenase/reductase SDR; acetoacetyl-CoA reductase 1819882 10482757 Alide2_1719 Alicycliphilus denitrificans K601 acetoacetyl-CoA reductase YP_004387624.1 1819136 R 596154 CDS YP_004387625.1 330824322 10482758 complement(1819893..1820336) 1 NC_015422.1 KEGG: tmz:Tmz1t_1024 hypothetical protein; hypothetical protein 1820336 10482758 Alide2_1720 Alicycliphilus denitrificans K601 hypothetical protein YP_004387625.1 1819893 R 596154 CDS YP_004387626.1 330824323 10482759 complement(1820445..1822205) 1 NC_015422.1 PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; KEGG: tmz:Tmz1t_1023 poly-beta-hydroxybutyrate polymerase domain protein; poly-beta-hydroxybutyrate polymerase domain-containing protein 1822205 10482759 Alide2_1721 Alicycliphilus denitrificans K601 poly-beta-hydroxybutyrate polymerase domain-containing protein YP_004387626.1 1820445 R 596154 CDS YP_004387627.1 330824324 10482760 1822541..1823149 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tmz:Tmz1t_1022 transcriptional regulator, TetR family; TetR family transcriptional regulator 1823149 10482760 Alide2_1722 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004387627.1 1822541 D 596154 CDS YP_004387628.1 330824325 10482761 1823343..1823762 1 NC_015422.1 KEGG: tmz:Tmz1t_1021 hypothetical protein; hypothetical protein 1823762 10482761 Alide2_1723 Alicycliphilus denitrificans K601 hypothetical protein YP_004387628.1 1823343 D 596154 CDS YP_004387629.1 330824326 10482762 1823790..1824830 1 NC_015422.1 PFAM: Secretion protein HlyD; KEGG: tmz:Tmz1t_1020 hypothetical protein; secretion protein HlyD family protein 1824830 10482762 Alide2_1724 Alicycliphilus denitrificans K601 secretion protein HlyD family protein YP_004387629.1 1823790 D 596154 CDS YP_004387630.1 330824327 10482763 1824832..1826604 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: tmz:Tmz1t_1019 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 1826604 10482763 Alide2_1725 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004387630.1 1824832 D 596154 CDS YP_004387631.1 330824328 10482764 1826601..1827770 1 NC_015422.1 PFAM: ABC-2 type transporter; KEGG: tmz:Tmz1t_1018 ABC-2 type transporter; ABC transporter 1827770 10482764 Alide2_1726 Alicycliphilus denitrificans K601 ABC transporter YP_004387631.1 1826601 D 596154 CDS YP_004387632.1 330824329 10482765 1827775..1828893 1 NC_015422.1 PFAM: ABC-2 type transporter; KEGG: tmz:Tmz1t_1017 ABC-2 type transporter; ABC transporter 1828893 10482765 Alide2_1727 Alicycliphilus denitrificans K601 ABC transporter YP_004387632.1 1827775 D 596154 CDS YP_004387633.1 330824330 10482766 1828890..1830428 1 NC_015422.1 KEGG: rme:Rmet_1267 RND efflux system outer membrane lipoprotein NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 1830428 10482766 Alide2_1728 Alicycliphilus denitrificans K601 NodT family RND efflux system outer membrane lipoprotein YP_004387633.1 1828890 D 596154 CDS YP_004387634.1 330824331 10482767 1830449..1830652 1 NC_015422.1 PFAM: Protein of unknown function DUF2892; KEGG: tmz:Tmz1t_1015 hypothetical protein; hypothetical protein 1830652 10482767 Alide2_1729 Alicycliphilus denitrificans K601 hypothetical protein YP_004387634.1 1830449 D 596154 CDS YP_004387635.1 330824332 10482768 1830660..1832069 1 NC_015422.1 KEGG: rme:Rmet_1266 beta-lactamase-like protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 1832069 10482768 Alide2_1730 Alicycliphilus denitrificans K601 beta-lactamase domain-containing protein YP_004387635.1 1830660 D 596154 CDS YP_004387636.1 330824333 10482769 1832069..1832935 1 NC_015422.1 KEGG: rme:Rmet_1265 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; hypothetical protein 1832935 10482769 Alide2_1731 Alicycliphilus denitrificans K601 hypothetical protein YP_004387636.1 1832069 D 596154 CDS YP_004387637.1 330824334 10482770 1832932..1834131 1 NC_015422.1 PFAM: Protein of unknown function DUF2219; KEGG: rme:Rmet_1261 hypothetical protein; hypothetical protein 1834131 10482770 Alide2_1732 Alicycliphilus denitrificans K601 hypothetical protein YP_004387637.1 1832932 D 596154 CDS YP_004387638.1 330824335 10482771 1834180..1834653 1 NC_015422.1 KEGG: tmz:Tmz1t_1007 hypothetical protein; hypothetical protein 1834653 10482771 Alide2_1733 Alicycliphilus denitrificans K601 hypothetical protein YP_004387638.1 1834180 D 596154 CDS YP_004387639.1 330824336 10482773 1835667..1836578 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: tmz:Tmz1t_1002 transcriptional regulator, LysR family; LysR family transcriptional regulator 1836578 10482773 Alide2_1735 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387639.1 1835667 D 596154 CDS YP_004387640.1 330824337 10482774 1837133..1837888 1 NC_015422.1 KEGG: tmz:Tmz1t_1001 hypothetical protein; hypothetical protein 1837888 10482774 Alide2_1736 Alicycliphilus denitrificans K601 hypothetical protein YP_004387640.1 1837133 D 596154 CDS YP_004387641.1 330824338 10482775 1838013..1838231 1 NC_015422.1 PFAM: Prophage CP4-57 regulatory; KEGG: tmz:Tmz1t_1000 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 1838231 10482775 Alide2_1737 Alicycliphilus denitrificans K601 phage transcriptional regulator AlpA YP_004387641.1 1838013 D 596154 CDS YP_004387642.1 330824339 10482776 1838272..1839138 1 NC_015422.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: tmz:Tmz1t_0999 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase 1839138 10482776 Alide2_1738 Alicycliphilus denitrificans K601 Cobyrinic acid ac-diamide synthase YP_004387642.1 1838272 D 596154 CDS YP_004387643.1 330824340 10482777 1839122..1839358 1 NC_015422.1 KEGG: tmz:Tmz1t_0998 hypothetical protein; hypothetical protein 1839358 10482777 Alide2_1739 Alicycliphilus denitrificans K601 hypothetical protein YP_004387643.1 1839122 D 596154 CDS YP_004387644.1 330824341 10482778 1839345..1840994 1 NC_015422.1 KEGG: tmz:Tmz1t_0997 hypothetical protein; manually curated; TIGRFAM: Integrating conjugative element, PFGI-1, ParB; integrating conjugative element ParB 1840994 10482778 Alide2_1740 Alicycliphilus denitrificans K601 integrating conjugative element ParB YP_004387644.1 1839345 D 596154 CDS YP_004387645.1 330824342 10482779 1841012..1841572 1 NC_015422.1 KEGG: mpt:Mpe_A2335 hypothetical protein; hypothetical protein 1841572 10482779 Alide2_1741 Alicycliphilus denitrificans K601 hypothetical protein YP_004387645.1 1841012 D 596154 CDS YP_004387646.1 330824343 10482780 1841576..1842778 1 NC_015422.1 KEGG: mpt:Mpe_A2336 hypothetical protein; hypothetical protein 1842778 10482780 Alide2_1742 Alicycliphilus denitrificans K601 hypothetical protein YP_004387646.1 1841576 D 596154 CDS YP_004387647.1 330824344 10482781 complement(1842830..1844047) 1 NC_015422.1 KEGG: rsl:RPSI07_1104 hypothethical protein; hypothetical protein 1844047 10482781 Alide2_1743 Alicycliphilus denitrificans K601 hypothetical protein YP_004387647.1 1842830 R 596154 CDS YP_004387648.1 330824345 10482782 1844284..1845072 1 NC_015422.1 KEGG: mpt:Mpe_A2339 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4669; PFAM: Integrating conjugative element protein, PFL4669; integrating conjugative element protein 1845072 10482782 Alide2_1744 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387648.1 1844284 D 596154 CDS YP_004387649.1 330824346 10482783 1845069..1845617 1 NC_015422.1 KEGG: tmz:Tmz1t_0992 hypothetical protein; hypothetical protein 1845617 10482783 Alide2_1745 Alicycliphilus denitrificans K601 hypothetical protein YP_004387649.1 1845069 D 596154 CDS YP_004387650.1 330824347 10482784 1845614..1845997 1 NC_015422.1 PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein; ssDNA-binding protein 1845997 10482784 Alide2_1746 Alicycliphilus denitrificans K601 ssDNA-binding protein YP_004387650.1 1845614 D 596154 CDS YP_004387651.1 330824348 10482785 1846291..1848306 1 NC_015422.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; DNA topoisomerase III 1848306 10482785 Alide2_1747 Alicycliphilus denitrificans K601 DNA topoisomerase III YP_004387651.1 1846291 D 596154 CDS YP_004387652.1 330824349 10482786 1849086..1849322 1 NC_015422.1 KEGG: tmz:Tmz1t_0989 hypothetical protein; hypothetical protein 1849322 10482786 Alide2_1748 Alicycliphilus denitrificans K601 hypothetical protein YP_004387652.1 1849086 D 596154 CDS YP_004387653.1 330824350 10482787 1849348..1849740 1 NC_015422.1 KEGG: ajs:Ajs_2230 hypothetical protein; hypothetical protein 1849740 10482787 Alide2_1749 Alicycliphilus denitrificans K601 hypothetical protein YP_004387653.1 1849348 D 596154 CDS YP_004387654.1 330824351 10482788 1849991..1850707 1 NC_015422.1 KEGG: ajs:Ajs_2229 hypothetical protein; hypothetical protein 1850707 10482788 Alide2_1750 Alicycliphilus denitrificans K601 hypothetical protein YP_004387654.1 1849991 D 596154 CDS YP_004387655.1 330824352 10482789 1850998..1851798 1 NC_015422.1 KEGG: tmz:Tmz1t_0980 hypothetical protein; hypothetical protein 1851798 10482789 Alide2_1751 Alicycliphilus denitrificans K601 hypothetical protein YP_004387655.1 1850998 D 596154 CDS YP_004387656.1 330824353 10482790 1851865..1852227 1 NC_015422.1 KEGG: tmz:Tmz1t_0979 hypothetical protein; hypothetical protein 1852227 10482790 Alide2_1752 Alicycliphilus denitrificans K601 hypothetical protein YP_004387656.1 1851865 D 596154 CDS YP_004387657.1 330824354 10482791 1852572..1853123 1 NC_015422.1 KEGG: mpt:Mpe_A2362 hypothetical protein; hypothetical protein 1853123 10482791 Alide2_1753 Alicycliphilus denitrificans K601 hypothetical protein YP_004387657.1 1852572 D 596154 CDS YP_004387658.1 330824355 10482792 1853178..1853789 1 NC_015422.1 KEGG: mpt:Mpe_A2363 hypothetical protein; hypothetical protein 1853789 10482792 Alide2_1754 Alicycliphilus denitrificans K601 hypothetical protein YP_004387658.1 1853178 D 596154 CDS YP_004387659.1 330824356 10482793 1853878..1854243 1 NC_015422.1 KEGG: mpt:Mpe_A2364 hypothetical protein; hypothetical protein 1854243 10482793 Alide2_1755 Alicycliphilus denitrificans K601 hypothetical protein YP_004387659.1 1853878 D 596154 CDS YP_004387660.1 330824357 10482794 1854328..1854978 1 NC_015422.1 KEGG: tmz:Tmz1t_0975 hypothetical protein; hypothetical protein 1854978 10482794 Alide2_1756 Alicycliphilus denitrificans K601 hypothetical protein YP_004387660.1 1854328 D 596154 CDS YP_004387661.1 330824358 10482795 1855044..1856153 1 NC_015422.1 KEGG: tmz:Tmz1t_0974 hypothetical protein; hypothetical protein 1856153 10482795 Alide2_1757 Alicycliphilus denitrificans K601 hypothetical protein YP_004387661.1 1855044 D 596154 CDS YP_004387662.1 330824359 10482796 1856255..1856560 1 NC_015422.1 KEGG: ajs:Ajs_2221 hypothetical protein; hypothetical protein 1856560 10482796 Alide2_1758 Alicycliphilus denitrificans K601 hypothetical protein YP_004387662.1 1856255 D 596154 CDS YP_004387663.1 330824360 10482797 1856661..1858931 1 NC_015422.1 SMART: DEAD-like helicase, N-terminal; KEGG: tmz:Tmz1t_0972 DEAD-like helicase; DEAD/DEAH box helicase 1858931 10482797 Alide2_1759 Alicycliphilus denitrificans K601 DEAD/DEAH box helicase YP_004387663.1 1856661 D 596154 CDS YP_004387664.1 330824361 10482799 1859238..1860182 1 NC_015422.1 PFAM: Chromate resistance exported protein; KEGG: har:HEAR0891 putative chromate resistance protein; chromate resistance exported protein 1860182 10482799 Alide2_1761 Alicycliphilus denitrificans K601 chromate resistance exported protein YP_004387664.1 1859238 D 596154 CDS YP_004387665.1 330824362 10482800 1860236..1861411 1 NC_015422.1 KEGG: sfu:Sfum_0092 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter; chromate transporter 1861411 10482800 Alide2_1762 Alicycliphilus denitrificans K601 chromate transporter YP_004387665.1 1860236 D 596154 CDS YP_004387666.1 330824363 10482801 1861471..1862064 1 NC_015422.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; KEGG: rme:Rmet_6201 manganese and iron superoxide dismutase; manganese/iron superoxide dismutase 1862064 10482801 Alide2_1763 Alicycliphilus denitrificans K601 manganese/iron superoxide dismutase YP_004387666.1 1861471 D 596154 CDS YP_004387667.1 330824364 10482802 complement(1862139..1863044) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: xom:XOO_1208 transposase; integrase catalytic subunit 1863044 10482802 Alide2_1764 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004387667.1 1862139 R 596154 CDS YP_004387668.1 330824365 10482803 complement(1863041..1863364) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: azl:AZL_f00580 transposase; transposase IS3/IS911 family protein 1863364 10482803 Alide2_1765 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004387668.1 1863041 R 596154 CDS YP_004387669.1 330824366 10482804 1863505..1864407 1 NC_015422.1 PFAM: Uncharacterised protein family, LppY/LpqO; KEGG: pop:POPTR_594759 hypothetical protein; hypothetical protein 1864407 10482804 Alide2_1766 Alicycliphilus denitrificans K601 hypothetical protein YP_004387669.1 1863505 D 596154 CDS YP_004387670.1 330824367 10482805 1864509..1864964 1 NC_015422.1 PFAM: Chromate resistance exported protein; KEGG: bph:Bphy_5141 ChrB protein; chromate resistance exported protein 1864964 10482805 Alide2_1767 Alicycliphilus denitrificans K601 chromate resistance exported protein YP_004387670.1 1864509 D 596154 CDS YP_004387671.1 330824368 10482806 1864964..1866178 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_6018 major facilitator superfamily MFS_1; major facilitator superfamily protein 1866178 10482806 Alide2_1768 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004387671.1 1864964 D 596154 CDS YP_004387672.1 330824369 10482807 1866286..1866969 1 NC_015422.1 KEGG: gbm:Gbem_2672 winged-helix transcriptional response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 1866969 10482807 Alide2_1769 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004387672.1 1866286 D 596154 CDS YP_004387673.1 330824370 10482808 1866966..1868420 1 NC_015422.1 TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; KEGG: gbm:Gbem_2673 HAMP domain-containing sensor histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; heavy metal sensor signal transduction histidine kinase 1868420 10482808 Alide2_1770 Alicycliphilus denitrificans K601 heavy metal sensor signal transduction histidine kinase YP_004387673.1 1866966 D 596154 CDS YP_004387674.1 330824371 10482809 1868417..1869505 1 NC_015422.1 PFAM: NHL repeat; KEGG: phe:Phep_1359 NHL repeat containing protein; NHL repeat containing protein 1869505 10482809 Alide2_1771 Alicycliphilus denitrificans K601 NHL repeat containing protein YP_004387674.1 1868417 D 596154 CDS YP_004387675.1 330824372 10482810 1869543..1869809 1 NC_015422.1 KEGG: nwa:Nwat_1254 hypothetical protein; hypothetical protein 1869809 10482810 Alide2_1772 Alicycliphilus denitrificans K601 hypothetical protein YP_004387675.1 1869543 D 596154 CDS YP_004387676.1 330824373 10482811 1869806..1870522 1 NC_015422.1 KEGG: mno:Mnod_2229 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1870522 10482811 Alide2_1773 Alicycliphilus denitrificans K601 ABC transporter YP_004387676.1 1869806 D 596154 CDS YP_004387677.1 330824374 10482812 1870689..1871975 1 NC_015422.1 KEGG: bvi:Bcep1808_7485 hypothetical protein; hypothetical protein 1871975 10482812 Alide2_1774 Alicycliphilus denitrificans K601 hypothetical protein YP_004387677.1 1870689 D 596154 CDS YP_004387678.1 330824375 10482813 1871972..1872679 1 NC_015422.1 KEGG: mno:Mnod_2227 hypothetical protein; hypothetical protein 1872679 10482813 Alide2_1775 Alicycliphilus denitrificans K601 hypothetical protein YP_004387678.1 1871972 D 596154 CDS YP_004387679.1 330824376 10482814 1872692..1873531 1 NC_015422.1 KEGG: bvi:Bcep1808_7486 hypothetical protein; hypothetical protein 1873531 10482814 Alide2_1776 Alicycliphilus denitrificans K601 hypothetical protein YP_004387679.1 1872692 D 596154 CDS YP_004387680.1 330824377 10482816 1874184..1874744 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: tmz:Tmz1t_0968 hypothetical protein; integrating conjugative element protein PilL 1874744 10482816 Alide2_1778 Alicycliphilus denitrificans K601 integrating conjugative element protein PilL YP_004387680.1 1874184 D 596154 CDS YP_004387681.1 330824378 10482817 1874741..1875388 1 NC_015422.1 KEGG: mpt:Mpe_A2376 hypothetical protein; hypothetical protein 1875388 10482817 Alide2_1779 Alicycliphilus denitrificans K601 hypothetical protein YP_004387681.1 1874741 D 596154 CDS YP_004387682.1 330824379 10482818 1875398..1876117 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: ajs:Ajs_2211 putative secreted protein; integrating conjugative element protein 1876117 10482818 Alide2_1780 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387682.1 1875398 D 596154 CDS YP_004387683.1 330824380 10482819 1876102..1876722 1 NC_015422.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: mpt:Mpe_A2378 hypothetical protein; lytic transglycosylase catalytic subunit 1876722 10482819 Alide2_1781 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004387683.1 1876102 D 596154 CDS YP_004387684.1 330824381 10482820 1876719..1877252 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: mpt:Mpe_A2379 hypothetical protein; integrating conjugative element protein 1877252 10482820 Alide2_1782 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387684.1 1876719 D 596154 CDS YP_004387685.1 330824382 10482821 1877261..1879417 1 NC_015422.1 KEGG: tmz:Tmz1t_0963 hypothetical protein; manually curated; TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1; conjugative coupling factor TraD 1879417 10482821 Alide2_1783 Alicycliphilus denitrificans K601 conjugative coupling factor TraD YP_004387685.1 1877261 D 596154 CDS YP_004387686.1 330824383 10482822 1879414..1880163 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: mpt:Mpe_A2381 hypothetical protein; integrating conjugative element membrane protein 1880163 10482822 Alide2_1784 Alicycliphilus denitrificans K601 integrating conjugative element membrane protein YP_004387686.1 1879414 D 596154 CDS YP_004387687.1 330824384 10482823 complement(1880209..1882836) 1 NC_015422.1 KEGG: cli:Clim_0127 hypothetical protein; hypothetical protein 1882836 10482823 Alide2_1785 Alicycliphilus denitrificans K601 hypothetical protein YP_004387687.1 1880209 R 596154 CDS YP_004387688.1 330824385 10482824 complement(1882947..1885685) 1 NC_015422.1 PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: eba:ebA2417 hypothetical protein; type III restriction protein res subunit 1885685 10482824 Alide2_1786 Alicycliphilus denitrificans K601 type III restriction protein res subunit YP_004387688.1 1882947 R 596154 CDS YP_004387689.1 330824386 10482825 complement(1885685..1887391) 1 NC_015422.1 PFAM: DNA methylase N-4/N-6; KEGG: bpm:BURPS1710b_3656 adenine specific DNA methylase Mod; DNA methylase N-4/N-6 domain-containing protein 1887391 10482825 Alide2_1787 Alicycliphilus denitrificans K601 DNA methylase N-4/N-6 domain-containing protein YP_004387689.1 1885685 R 596154 CDS YP_004387690.1 330824387 10482826 complement(1887402..1889192) 1 NC_015422.1 PFAM: Abortive phage infection; KEGG: pph:Ppha_0341 hypothetical protein; abortive phage infection protein 1889192 10482826 Alide2_1788 Alicycliphilus denitrificans K601 abortive phage infection protein YP_004387690.1 1887402 R 596154 CDS YP_004387691.1 330824388 10482827 complement(1889192..1891390) 1 NC_015422.1 PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: alv:Alvin_2786 peptidase S8 and S53 subtilisin kexin sedolisin; peptidase S8 and S53 subtilisin kexin sedolisin 1891390 10482827 Alide2_1789 Alicycliphilus denitrificans K601 peptidase S8 and S53 subtilisin kexin sedolisin YP_004387691.1 1889192 R 596154 CDS YP_004387692.1 330824389 10482828 complement(1891555..1892541) 1 NC_015422.1 KEGG: alv:Alvin_2785 AAA ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase 1892541 10482828 Alide2_1790 Alicycliphilus denitrificans K601 AAA ATPase YP_004387692.1 1891555 R 596154 CDS YP_004387693.1 330824390 10482829 complement(1892622..1895501) 1 NC_015422.1 manually curated; PFAM: SNF2-related; Helicase, C-terminal; KEGG: tbd:Tbd_0933 DEAD/DEAH box helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SNF2-like protein 1895501 10482829 Alide2_1791 Alicycliphilus denitrificans K601 SNF2-like protein YP_004387693.1 1892622 R 596154 CDS YP_004387694.1 330824391 10482830 complement(1895560..1895760) 1 NC_015422.1 KEGG: ajs:Ajs_2531 phage transcriptional regulator, AlpA; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory; excisionase family DNA binding domain-containing protein 1895760 10482830 Alide2_1792 Alicycliphilus denitrificans K601 excisionase family DNA binding domain-containing protein YP_004387694.1 1895560 R 596154 CDS YP_004387695.1 330824392 10482831 1895984..1896349 1 NC_015422.1 KEGG: tmz:Tmz1t_0956 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD; hypothetical protein 1896349 10482831 Alide2_1793 Alicycliphilus denitrificans K601 hypothetical protein YP_004387695.1 1895984 D 596154 CDS YP_004387696.1 330824393 10482832 1896346..1896585 1 NC_015422.1 TIGRFAM: Protein of unknown function DUF3262; KEGG: ajs:Ajs_2193 hypothetical protein; integrating conjugative element protein 1896585 10482832 Alide2_1794 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387696.1 1896346 D 596154 CDS YP_004387697.1 330824394 10482833 1896608..1896976 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: tmz:Tmz1t_0954 hypothetical protein; integrating conjugative element membrane protein 1896976 10482833 Alide2_1795 Alicycliphilus denitrificans K601 integrating conjugative element membrane protein YP_004387697.1 1896608 D 596154 CDS YP_004387698.1 330824395 10482834 1896989..1897399 1 NC_015422.1 TIGRFAM: Protein of unknown function DUF3487; KEGG: ajs:Ajs_2191 hypothetical protein; conjugative transfer region protein 1897399 10482834 Alide2_1796 Alicycliphilus denitrificans K601 conjugative transfer region protein YP_004387698.1 1896989 D 596154 CDS YP_004387699.1 330824396 10482835 1897396..1898088 1 NC_015422.1 TIGRFAM: Protein of unknown function DUF2895; KEGG: mpt:Mpe_A2390 hypothetical protein; integrating conjugative element protein 1898088 10482835 Alide2_1797 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387699.1 1897396 D 596154 CDS YP_004387700.1 330824397 10482836 1898085..1898999 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4704; KEGG: ajs:Ajs_2189 hypothetical protein; integrating conjugative element protein 1898999 10482836 Alide2_1798 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387700.1 1898085 D 596154 CDS YP_004387701.1 330824398 10482837 1898989..1900422 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: mpt:Mpe_A2392 hypothetical protein; integrating conjugative element protein 1900422 10482837 Alide2_1799 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387701.1 1898989 D 596154 CDS YP_004387702.1 330824399 10482838 1900403..1900837 1 NC_015422.1 TIGRFAM: Conjugative transfer region lipoprotein; KEGG: mpt:Mpe_A2393 hypothetical protein; conjugative transfer region lipoprotein 1900837 10482838 Alide2_1800 Alicycliphilus denitrificans K601 conjugative transfer region lipoprotein YP_004387702.1 1900403 D 596154 CDS YP_004387703.1 330824400 10482839 1900837..1903725 1 NC_015422.1 TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: tmz:Tmz1t_0948 hypothetical protein; conjugative transfer ATPase 1903725 10482839 Alide2_1801 Alicycliphilus denitrificans K601 conjugative transfer ATPase YP_004387703.1 1900837 D 596154 CDS YP_004387704.1 330824401 10482840 1903739..1904482 1 NC_015422.1 KEGG: tmz:Tmz1t_0947 hypothetical protein; hypothetical protein 1904482 10482840 Alide2_1802 Alicycliphilus denitrificans K601 hypothetical protein YP_004387704.1 1903739 D 596154 CDS YP_004387705.1 330824402 10482841 1904678..1905172 1 NC_015422.1 KEGG: ajs:Ajs_2184 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758; DNA repair protein RadC 1905172 10482841 Alide2_1803 Alicycliphilus denitrificans K601 DNA repair protein RadC YP_004387705.1 1904678 D 596154 CDS YP_004387706.1 330824403 10482842 1905395..1905871 1 NC_015422.1 KEGG: app:CAP2UW1_2945 hypothetical protein; hypothetical protein 1905871 10482842 Alide2_1804 Alicycliphilus denitrificans K601 hypothetical protein YP_004387706.1 1905395 D 596154 CDS YP_004387707.1 330824404 10482843 1905868..1908831 1 NC_015422.1 KEGG: app:CAP2UW1_2946 N-6 DNA methylase; N-6 DNA methylase 1908831 10482843 Alide2_1805 Alicycliphilus denitrificans K601 N-6 DNA methylase YP_004387707.1 1905868 D 596154 CDS YP_004387708.1 330824405 10482844 1908981..1909499 1 NC_015422.1 KEGG: app:CAP2UW1_2947 hypothetical protein; hypothetical protein 1909499 10482844 Alide2_1806 Alicycliphilus denitrificans K601 hypothetical protein YP_004387708.1 1908981 D 596154 CDS YP_004387709.1 330824406 10482845 1909643..1910086 1 NC_015422.1 KEGG: ajs:Ajs_2183 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4709; PFAM: Integrating conjugative element protein, PFL4709; integrating conjugative element protein 1910086 10482845 Alide2_1807 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387709.1 1909643 D 596154 CDS YP_004387710.1 330824407 10482846 1910083..1911027 1 NC_015422.1 KEGG: eba:ebA2511 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4710; PFAM: Integrating conjugative element protein, PFL4710; integrating conjugative element protein 1911027 10482846 Alide2_1808 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387710.1 1910083 D 596154 CDS YP_004387711.1 330824408 10482847 1911038..1912444 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: ajs:Ajs_2181 hypothetical protein; integrating conjugative element protein 1912444 10482847 Alide2_1809 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387711.1 1911038 D 596154 CDS YP_004387712.1 330824409 10482848 1912441..1912794 1 NC_015422.1 KEGG: ajs:Ajs_2180 hypothetical protein; hypothetical protein 1912794 10482848 Alide2_1810 Alicycliphilus denitrificans K601 hypothetical protein YP_004387712.1 1912441 D 596154 CDS YP_004387713.1 330824410 10482849 1912810..1914333 1 NC_015422.1 KEGG: ajs:Ajs_2179 hypothetical protein; hypothetical protein 1914333 10482849 Alide2_1811 Alicycliphilus denitrificans K601 hypothetical protein YP_004387713.1 1912810 D 596154 CDS YP_004387714.1 330824411 10482850 complement(1914350..1914718) 1 NC_015422.1 PFAM: Protein of unknown function DUF3742; KEGG: ajs:Ajs_2178 hypothetical protein; hypothetical protein 1914718 10482850 Alide2_1812 Alicycliphilus denitrificans K601 hypothetical protein YP_004387714.1 1914350 R 596154 CDS YP_004387715.1 330824412 10482851 1914948..1915706 1 NC_015422.1 KEGG: mpt:Mpe_A2403 hypothetical protein; hypothetical protein 1915706 10482851 Alide2_1813 Alicycliphilus denitrificans K601 hypothetical protein YP_004387715.1 1914948 D 596154 CDS YP_004387716.1 330824413 10482852 1915699..1916619 1 NC_015422.1 PFAM: Protein of unknown function DUF1814; KEGG: ajs:Ajs_2176 hypothetical protein; hypothetical protein 1916619 10482852 Alide2_1814 Alicycliphilus denitrificans K601 hypothetical protein YP_004387716.1 1915699 D 596154 CDS YP_004387717.1 330824414 10482853 1916822..1918666 1 NC_015422.1 KEGG: ajs:Ajs_2175 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal; integrating conjugative element relaxase 1918666 10482853 Alide2_1815 Alicycliphilus denitrificans K601 integrating conjugative element relaxase YP_004387717.1 1916822 D 596154 CDS YP_004387718.1 330824415 10482854 complement(1918693..1918992) 1 NC_015422.1 KEGG: mpt:Mpe_A2406 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 1918992 10482854 Alide2_1816 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004387718.1 1918693 R 596154 CDS YP_004387719.1 330824416 10482855 1919098..1919724 1 NC_015422.1 PFAM: LysR, substrate-binding; KEGG: mpt:Mpe_A2407 transcriptional regulator; LysR family transcriptional regulator 1919724 10482855 Alide2_1817 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387719.1 1919098 D 596154 CDS YP_004387720.1 330824417 10482857 complement(1919906..1920985) 1 NC_015422.1 SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; TIGRFAM: Peptidase A8, signal peptidase II; KEGG: kpu:pK2044_00535 lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; PFAM: Peptidase A8, signal peptidase II; Phosphatidic acid phosphatase type 2/haloperoxidase; lipoprotein signal peptidase 1920985 10482857 Alide2_1819 Alicycliphilus denitrificans K601 lipoprotein signal peptidase YP_004387720.1 1919906 R 596154 CDS YP_004387721.1 330824418 10482858 complement(1920982..1923384) 1 NC_015422.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: tin:Tint_3215 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 1923384 10482858 Alide2_1820 Alicycliphilus denitrificans K601 heavy metal translocating P-type ATPase YP_004387721.1 1920982 R 596154 CDS YP_004387722.1 330824419 10482859 1923466..1923909 1 NC_015422.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: tgr:Tgr7_2809 putative transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 1923909 10482859 Alide2_1821 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004387722.1 1923466 D 596154 CDS YP_004387723.1 330824420 10482860 complement(1923945..1925798) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: mpt:Mpe_A2408 integrase (int); integrase family protein 1925798 10482860 Alide2_1822 Alicycliphilus denitrificans K601 integrase family protein YP_004387723.1 1923945 R 596154 CDS YP_004387724.1 330824421 10482861 1926278..1926889 1 NC_015422.1 KEGG: pna:Pnap_4574 hypothetical protein; hypothetical protein 1926889 10482861 Alide2_1823 Alicycliphilus denitrificans K601 hypothetical protein YP_004387724.1 1926278 D 596154 CDS YP_004387725.1 330824422 10482862 1926985..1928460 1 NC_015422.1 KEGG: xfa:XF2733 hypothetical protein; hypothetical protein 1928460 10482862 Alide2_1824 Alicycliphilus denitrificans K601 hypothetical protein YP_004387725.1 1926985 D 596154 CDS YP_004387726.1 330824423 10482863 1928492..1929166 1 NC_015422.1 KEGG: tmz:Tmz1t_0049 hypothetical protein; hypothetical protein 1929166 10482863 Alide2_1825 Alicycliphilus denitrificans K601 hypothetical protein YP_004387726.1 1928492 D 596154 CDS YP_004387727.1 330824424 10482864 1929163..1932540 1 NC_015422.1 KEGG: tmz:Tmz1t_0051 conserved hypothetical cytosolic protein; hypothetical protein 1932540 10482864 Alide2_1826 Alicycliphilus denitrificans K601 hypothetical protein YP_004387727.1 1929163 D 596154 CDS YP_004387728.1 330824425 10482865 1932537..1933742 1 NC_015422.1 KEGG: xfm:Xfasm12_2281 hypothetical protein; hypothetical protein 1933742 10482865 Alide2_1827 Alicycliphilus denitrificans K601 hypothetical protein YP_004387728.1 1932537 D 596154 CDS YP_004387729.1 330824426 10482868 1935553..1935846 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: rpi:Rpic_2066 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1935846 10482868 Alide2_1830 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004387729.1 1935553 D 596154 CDS YP_004387730.1 330824427 10482869 1935843..1936472 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rde:RD1_3452 transposase, putative; integrase catalytic subunit 1936472 10482869 Alide2_1831 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004387730.1 1935843 D 596154 CDS YP_004387731.1 330824428 10482870 complement(1937148..1937780) 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_5293 TetR family transcriptional regulator; TetR family transcriptional regulator 1937780 10482870 Alide2_1832 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004387731.1 1937148 R 596154 CDS YP_004387732.1 330824429 10482871 1938014..1939180 1 NC_015422.1 KEGG: axy:AXYL_02788 acyl-CoA dehydrogenase 1; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase 1939180 10482871 Alide2_1833 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004387732.1 1938014 D 596154 CDS YP_004387733.1 330824430 10482872 1939221..1940537 1 NC_015422.1 KEGG: reu:Reut_A3087 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 1940537 10482872 Alide2_1834 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387733.1 1939221 D 596154 CDS YP_004387734.1 330824431 10482873 1940534..1941676 1 NC_015422.1 PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1941676 10482873 Alide2_1835 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004387734.1 1940534 D 596154 CDS YP_004387735.1 330824432 10482874 1941690..1942847 1 NC_015422.1 KEGG: pol:Bpro_5277 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; butyryl-CoA dehydrogenase 1942847 10482874 Alide2_1836 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004387735.1 1941690 D 596154 CDS YP_004387736.1 330824433 10482875 complement(1942967..1943359) 1 NC_015422.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: eba:ebB200 putative thiolase subunit; hypothetical protein 1943359 10482875 Alide2_1837 Alicycliphilus denitrificans K601 hypothetical protein YP_004387736.1 1942967 R 596154 CDS YP_004387737.1 330824434 10482876 complement(1943364..1944530) 1 NC_015422.1 KEGG: reh:H16_A1297 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 1944530 10482876 Alide2_1838 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004387737.1 1943364 R 596154 CDS YP_004387738.1 330824435 10482877 complement(1944635..1945567) 1 NC_015422.1 KEGG: pol:Bpro_5250 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 1945567 10482877 Alide2_1839 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004387738.1 1944635 R 596154 CDS YP_004387739.1 330824436 10482878 1945716..1946474 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: eba:ebA5300 putative dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR; 3-oxoacyl-ACP reductase 1946474 10482878 Alide2_1840 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004387739.1 1945716 D 596154 CDS YP_004387740.1 330824437 10482879 1946575..1948692 1 NC_015422.1 KEGG: bpt:Bpet1210 acetyl-CoA synthetase; PFAM: CoA-binding; SMART: CoA-binding; CoA-binding domain-containing protein 1948692 10482879 Alide2_1841 Alicycliphilus denitrificans K601 CoA-binding domain-containing protein YP_004387740.1 1946575 D 596154 CDS YP_004387741.1 330824438 10482881 1949903..1950721 1 NC_015422.1 PFAM: Crotonase, core; KEGG: dac:Daci_0194 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1950721 10482881 Alide2_1843 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387741.1 1949903 D 596154 CDS YP_004387742.1 330824439 10482882 1950735..1953017 1 NC_015422.1 KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; isovaleryl-CoA dehydrogenase 1953017 10482882 Alide2_1844 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004387742.1 1950735 D 596154 CDS YP_004387743.1 330824440 10482883 complement(1953082..1954038) 1 NC_015422.1 KEGG: reu:Reut_B4356 hypothetical protein; hypothetical protein 1954038 10482883 Alide2_1845 Alicycliphilus denitrificans K601 hypothetical protein YP_004387743.1 1953082 R 596154 CDS YP_004387744.1 330824441 10482885 complement(1955011..1955982) 1 NC_015422.1 KEGG: rme:Rmet_3671 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor 1955982 10482885 Alide2_1847 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor YP_004387744.1 1955011 R 596154 CDS YP_004387745.1 330824442 10482886 complement(1956027..1957001) 1 NC_015422.1 KEGG: cti:RALTA_B1677 conserved hypothetical protein; UPF0065; hypothetical protein 1957001 10482886 Alide2_1848 Alicycliphilus denitrificans K601 hypothetical protein YP_004387745.1 1956027 R 596154 CDS YP_004387746.1 330824443 10482887 complement(1957199..1958056) 1 NC_015422.1 KEGG: pol:Bpro_5282 MaoC-like dehydratase; PFAM: MaoC-like dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 1958056 10482887 Alide2_1849 Alicycliphilus denitrificans K601 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_004387746.1 1957199 R 596154 CDS YP_004387747.1 330824444 10482888 complement(1958046..1958363) 1 NC_015422.1 hypothetical protein 1958363 10482888 Alide2_1850 Alicycliphilus denitrificans K601 hypothetical protein YP_004387747.1 1958046 R 596154 CDS YP_004387748.1 330824445 10482889 complement(1958445..1959302) 1 NC_015422.1 KEGG: bbr:BB4339 hypothetical protein; hypothetical protein 1959302 10482889 Alide2_1851 Alicycliphilus denitrificans K601 hypothetical protein YP_004387748.1 1958445 R 596154 CDS YP_004387749.1 330824446 10482890 complement(1959514..1959939) 1 NC_015422.1 KEGG: pol:Bpro_5250 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; regulatory protein IclR 1959939 10482890 Alide2_1852 Alicycliphilus denitrificans K601 regulatory protein IclR YP_004387749.1 1959514 R 596154 CDS YP_004387750.1 330824447 10482891 1960337..1961089 1 NC_015422.1 KEGG: azo:azo2492 electron transfer flavoprotein subunit beta; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha/beta 1961089 10482891 Alide2_1853 Alicycliphilus denitrificans K601 electron transfer flavoprotein subunit alpha/beta YP_004387750.1 1960337 D 596154 CDS YP_004387751.1 330824448 10482892 1961086..1962027 1 NC_015422.1 KEGG: tmz:Tmz1t_0422 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha 1962027 10482892 Alide2_1854 Alicycliphilus denitrificans K601 electron transfer flavoprotein subunit alpha YP_004387751.1 1961086 D 596154 CDS YP_004387752.1 330824449 10482893 1962062..1962832 1 NC_015422.1 PFAM: Crotonase, core; KEGG: bxe:Bxe_C0269 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1962832 10482893 Alide2_1855 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387752.1 1962062 D 596154 CDS YP_004387753.1 330824450 10482894 1962952..1963911 1 NC_015422.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bph:Bphy_0157 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase 1963911 10482894 Alide2_1856 Alicycliphilus denitrificans K601 2-nitropropane dioxygenase YP_004387753.1 1962952 D 596154 CDS YP_004387754.1 330824451 10482895 1964047..1965024 1 NC_015422.1 KEGG: vap:Vapar_0801 hypothetical protein; hypothetical protein 1965024 10482895 Alide2_1857 Alicycliphilus denitrificans K601 hypothetical protein YP_004387754.1 1964047 D 596154 CDS YP_004387755.1 330824452 10482896 complement(1965148..1966050) 1 NC_015422.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pla:Plav_2055 alpha/beta hydrolase fold; alpha/beta fold family hydrolase 1966050 10482896 Alide2_1858 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004387755.1 1965148 R 596154 CDS YP_004387756.1 330824453 10482897 complement(1966073..1967245) 1 NC_015422.1 manually curated; KEGG: mau:Micau_2811 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; alpha-methylacyl-CoA racemase 1967245 10482897 Alide2_1859 Alicycliphilus denitrificans K601 alpha-methylacyl-CoA racemase YP_004387756.1 1966073 R 596154 CDS YP_004387757.1 330824454 10482898 complement(1967236..1968531) 1 NC_015422.1 KEGG: rpa:RPA4552 4-hydroxybutyrate-CoA transferase/hydrolase; 4-hydroxybutyrate-CoA transferase/hydrolase 1968531 10482898 Alide2_1860 Alicycliphilus denitrificans K601 4-hydroxybutyrate-CoA transferase/hydrolase YP_004387757.1 1967236 R 596154 CDS YP_004387758.1 330824455 10482899 complement(1968554..1970008) 1 NC_015422.1 PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C7308 MmgE/PrpD; MmgE/PrpD family protein 1970008 10482899 Alide2_1861 Alicycliphilus denitrificans K601 MmgE/PrpD family protein YP_004387758.1 1968554 R 596154 CDS YP_004387759.1 330824456 10482900 complement(1970044..1971018) 1 NC_015422.1 KEGG: bbr:BB3950 hypothetical protein; hypothetical protein 1971018 10482900 Alide2_1862 Alicycliphilus denitrificans K601 hypothetical protein YP_004387759.1 1970044 R 596154 CDS YP_004387760.1 330824457 10482901 complement(1971089..1972354) 1 NC_015422.1 KEGG: bbr:BB4584 hypothetical protein; PFAM: CoA-transferase family III; formyl-CoA transferase 1972354 10482901 Alide2_1863 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004387760.1 1971089 R 596154 CDS YP_004387761.1 330824458 10482902 complement(1972351..1973490) 1 NC_015422.1 KEGG: bur:Bcep18194_C7492 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase 1973490 10482902 Alide2_1864 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004387761.1 1972351 R 596154 CDS YP_004387762.1 330824459 10482903 complement(1973518..1973964) 1 NC_015422.1 PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7491 MaoC-like dehydratase; MaoC domain-containing protein dehydratase 1973964 10482903 Alide2_1865 Alicycliphilus denitrificans K601 MaoC domain-containing protein dehydratase YP_004387762.1 1973518 R 596154 CDS YP_004387763.1 330824460 10482904 1974158..1974652 1 NC_015422.1 KEGG: bpt:Bpet1156 hypothetical protein; hypothetical protein 1974652 10482904 Alide2_1866 Alicycliphilus denitrificans K601 hypothetical protein YP_004387763.1 1974158 D 596154 CDS YP_004387764.1 330824461 10482905 1974694..1975665 1 NC_015422.1 KEGG: bpt:Bpet1157 putative secreted protein; hypothetical protein 1975665 10482905 Alide2_1867 Alicycliphilus denitrificans K601 hypothetical protein YP_004387764.1 1974694 D 596154 CDS YP_004387765.1 330824462 10482906 1975662..1976480 1 NC_015422.1 PFAM: Crotonase, core; KEGG: bpt:Bpet1158 putative enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1976480 10482906 Alide2_1868 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387765.1 1975662 D 596154 CDS YP_004387766.1 330824463 10482907 1976477..1977313 1 NC_015422.1 PFAM: Crotonase, core; KEGG: axy:AXYL_06657 enoyl-CoA hydratase/isomerase family protein 35; enoyl-CoA hydratase/isomerase 1977313 10482907 Alide2_1869 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004387766.1 1976477 D 596154 CDS YP_004387767.1 330824464 10482908 complement(1977310..1978122) 1 NC_015422.1 KEGG: axy:AXYL_06658 transcriptional regulator family protein 40; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 1978122 10482908 Alide2_1870 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004387767.1 1977310 R 596154 CDS YP_004387768.1 330824465 10482909 complement(1978122..1978943) 1 NC_015422.1 KEGG: axy:AXYL_06659 transcriptional regulator family protein 41; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 1978943 10482909 Alide2_1871 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004387768.1 1978122 R 596154 CDS YP_004387769.1 330824466 10482910 complement(1978995..1980938) 1 NC_015422.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: bpt:Bpet1154 putative biotin carboxylase subunit of propionyl-CoA carboxylase; SMART: Biotin carboxylase, C-terminal; methylcrotonoyl-CoA carboxylase, pyruvate carboxylase 1980938 10482910 Alide2_1872 Alicycliphilus denitrificans K601 methylcrotonoyl-CoA carboxylase, pyruvate carboxylase YP_004387769.1 1978995 R 596154 CDS YP_004387770.1 330824467 10482911 complement(1980941..1982545) 1 NC_015422.1 KEGG: bpt:Bpet1153 putative propionyl-CoA carboxylase beta subunit; PFAM: Carboxyl transferase; methylcrotonoyl-CoA carboxylase 1982545 10482911 Alide2_1873 Alicycliphilus denitrificans K601 methylcrotonoyl-CoA carboxylase YP_004387770.1 1980941 R 596154 CDS YP_004387771.1 330824468 10482912 complement(1982548..1982859) 1 NC_015422.1 KEGG: bpt:Bpet1152 hypothetical protein; hypothetical protein 1982859 10482912 Alide2_1874 Alicycliphilus denitrificans K601 hypothetical protein YP_004387771.1 1982548 R 596154 CDS YP_004387772.1 330824469 10482913 complement(1982870..1984246) 1 NC_015422.1 PFAM: Protein of unknown function DUF1446; KEGG: bpt:Bpet1151 hypothetical protein; hypothetical protein 1984246 10482913 Alide2_1875 Alicycliphilus denitrificans K601 hypothetical protein YP_004387772.1 1982870 R 596154 CDS YP_004387773.1 330824470 10482914 1984420..1984806 1 NC_015422.1 KEGG: reh:H16_B1907 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein 1984806 10482914 Alide2_1876 Alicycliphilus denitrificans K601 phenylacetic acid degradation-like protein YP_004387773.1 1984420 D 596154 CDS YP_004387774.1 330824471 10482917 complement(1986223..1987026) 1 NC_015422.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 1987026 10482917 Alide2_1879 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004387774.1 1986223 R 596154 CDS YP_004387775.1 330824472 10482918 complement(1987016..1988542) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit 1988542 10482918 Alide2_1880 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004387775.1 1987016 R 596154 CDS YP_004387776.1 330824473 10482920 1988887..1989426 1 NC_015422.1 KEGG: tmz:Tmz1t_0992 hypothetical protein; hypothetical protein 1989426 10482920 Alide2_1882 Alicycliphilus denitrificans K601 hypothetical protein YP_004387776.1 1988887 D 596154 CDS YP_004387777.1 330824474 10482921 1989423..1989806 1 NC_015422.1 PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein; ssDNA-binding protein 1989806 10482921 Alide2_1883 Alicycliphilus denitrificans K601 ssDNA-binding protein YP_004387777.1 1989423 D 596154 CDS YP_004387778.1 330824475 10482922 1990101..1992131 1 NC_015422.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; DNA topoisomerase III 1992131 10482922 Alide2_1884 Alicycliphilus denitrificans K601 DNA topoisomerase III YP_004387778.1 1990101 D 596154 CDS YP_004387779.1 330824476 10482923 complement(1992657..1993487) 1 NC_015422.1 KEGG: mpt:Mpe_A2343 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like; GCN5-related N-acetyltransferase (GNAT) domain; arsenate reductase 1993487 10482923 Alide2_1885 Alicycliphilus denitrificans K601 arsenate reductase YP_004387779.1 1992657 R 596154 CDS YP_004387780.1 330824477 10482924 complement(1993484..1994575) 1 NC_015422.1 KEGG: mpt:Mpe_A2344 ACR3 permease; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter; arsenical-resistance protein 1994575 10482924 Alide2_1886 Alicycliphilus denitrificans K601 arsenical-resistance protein YP_004387780.1 1993484 R 596154 CDS YP_004387781.1 330824478 10482925 complement(1994585..1995082) 1 NC_015422.1 KEGG: mpt:Mpe_A2345 arsenate reductase, putative; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase 1995082 10482925 Alide2_1887 Alicycliphilus denitrificans K601 protein tyrosine phosphatase YP_004387781.1 1994585 R 596154 CDS YP_004387782.1 330824479 10482926 complement(1995095..1995559) 1 NC_015422.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A2346 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 1995559 10482926 Alide2_1888 Alicycliphilus denitrificans K601 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004387782.1 1995095 R 596154 CDS YP_004387783.1 330824480 10482927 complement(1995572..1995901) 1 NC_015422.1 SMART: HTH transcriptional regulator, ArsR; KEGG: mpt:Mpe_A2347 ArsR family transcriptional regulator; regulatory protein ArsR 1995901 10482927 Alide2_1889 Alicycliphilus denitrificans K601 regulatory protein ArsR YP_004387783.1 1995572 R 596154 CDS YP_004387784.1 330824481 10482928 1996153..1996479 1 NC_015422.1 KEGG: rpf:Rpic12D_0655 hypothetical protein; hypothetical protein 1996479 10482928 Alide2_1890 Alicycliphilus denitrificans K601 hypothetical protein YP_004387784.1 1996153 D 596154 CDS YP_004387785.1 330824482 10482929 1996505..1996897 1 NC_015422.1 KEGG: rpf:Rpic12D_0656 hypothetical protein; hypothetical protein 1996897 10482929 Alide2_1891 Alicycliphilus denitrificans K601 hypothetical protein YP_004387785.1 1996505 D 596154 CDS YP_004387786.1 330824483 10482930 1996999..1997463 1 NC_015422.1 KEGG: tau:Tola_2412 hypothetical protein; hypothetical protein 1997463 10482930 Alide2_1892 Alicycliphilus denitrificans K601 hypothetical protein YP_004387786.1 1996999 D 596154 CDS YP_004387787.1 330824484 10482931 1997544..1998260 1 NC_015422.1 KEGG: rpf:Rpic12D_0658 hypothetical protein; hypothetical protein 1998260 10482931 Alide2_1893 Alicycliphilus denitrificans K601 hypothetical protein YP_004387787.1 1997544 D 596154 CDS YP_004387788.1 330824485 10482932 1998554..1999351 1 NC_015422.1 KEGG: rpf:Rpic12D_0659 hypothetical protein; hypothetical protein 1999351 10482932 Alide2_1894 Alicycliphilus denitrificans K601 hypothetical protein YP_004387788.1 1998554 D 596154 CDS YP_004387789.1 330824486 10482933 1999426..1999791 1 NC_015422.1 KEGG: ajs:Ajs_2227 hypothetical protein; hypothetical protein 1999791 10482933 Alide2_1895 Alicycliphilus denitrificans K601 hypothetical protein YP_004387789.1 1999426 D 596154 CDS YP_004387790.1 330824487 10482934 1999934..2000776 1 NC_015422.1 KEGG: rpf:Rpic12D_0661 hypothetical protein; hypothetical protein 2000776 10482934 Alide2_1896 Alicycliphilus denitrificans K601 hypothetical protein YP_004387790.1 1999934 D 596154 CDS YP_004387791.1 330824488 10482935 2001095..2001649 1 NC_015422.1 KEGG: rpf:Rpic12D_0662 hypothetical protein; hypothetical protein 2001649 10482935 Alide2_1897 Alicycliphilus denitrificans K601 hypothetical protein YP_004387791.1 2001095 D 596154 CDS YP_004387792.1 330824489 10482936 2001770..2002399 1 NC_015422.1 KEGG: rpf:Rpic12D_0663 hypothetical protein; hypothetical protein 2002399 10482936 Alide2_1898 Alicycliphilus denitrificans K601 hypothetical protein YP_004387792.1 2001770 D 596154 CDS YP_004387793.1 330824490 10482937 2002501..2002893 1 NC_015422.1 KEGG: mpt:Mpe_A2364 hypothetical protein; hypothetical protein 2002893 10482937 Alide2_1899 Alicycliphilus denitrificans K601 hypothetical protein YP_004387793.1 2002501 D 596154 CDS YP_004387794.1 330824491 10482938 2002901..2003170 1 NC_015422.1 KEGG: tgr:Tgr7_2834 hypothetical protein; hypothetical protein 2003170 10482938 Alide2_1900 Alicycliphilus denitrificans K601 hypothetical protein YP_004387794.1 2002901 D 596154 CDS YP_004387795.1 330824492 10482939 2003308..2004135 1 NC_015422.1 PFAM: Protein of unknown function DUF932; KEGG: rpf:Rpic12D_0664 protein of unknown function DUF932; hypothetical protein 2004135 10482939 Alide2_1901 Alicycliphilus denitrificans K601 hypothetical protein YP_004387795.1 2003308 D 596154 CDS YP_004387796.1 330824493 10482940 2004636..2005292 1 NC_015422.1 KEGG: rpf:Rpic12D_0665 hypothetical protein; hypothetical protein 2005292 10482940 Alide2_1902 Alicycliphilus denitrificans K601 hypothetical protein YP_004387796.1 2004636 D 596154 CDS YP_004387797.1 330824494 10482941 2005360..2006475 1 NC_015422.1 KEGG: rpf:Rpic12D_0666 hypothetical protein; hypothetical protein 2006475 10482941 Alide2_1903 Alicycliphilus denitrificans K601 hypothetical protein YP_004387797.1 2005360 D 596154 CDS YP_004387798.1 330824495 10482942 2006587..2006892 1 NC_015422.1 KEGG: tmz:Tmz1t_0973 hypothetical protein; hypothetical protein 2006892 10482942 Alide2_1904 Alicycliphilus denitrificans K601 hypothetical protein YP_004387798.1 2006587 D 596154 CDS YP_004387799.1 330824496 10482943 2006995..2009277 1 NC_015422.1 SMART: DEAD-like helicase, N-terminal; KEGG: rpf:Rpic12D_0667 DEAD-like helicase; DEAD/DEAH box helicase 2009277 10482943 Alide2_1905 Alicycliphilus denitrificans K601 DEAD/DEAH box helicase YP_004387799.1 2006995 D 596154 CDS YP_004387800.1 330824497 10482944 2009437..2010048 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: rpf:Rpic12D_0668 hypothetical protein; integrating conjugative element protein PilL 2010048 10482944 Alide2_1906 Alicycliphilus denitrificans K601 integrating conjugative element protein PilL YP_004387800.1 2009437 D 596154 CDS YP_004387801.1 330824498 10482945 2010045..2010689 1 NC_015422.1 KEGG: rpf:Rpic12D_0669 hypothetical protein; hypothetical protein 2010689 10482945 Alide2_1907 Alicycliphilus denitrificans K601 hypothetical protein YP_004387801.1 2010045 D 596154 CDS YP_004387802.1 330824499 10482946 2010699..2011430 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: rpf:Rpic12D_0670 putative secreted protein; integrating conjugative element protein 2011430 10482946 Alide2_1908 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387802.1 2010699 D 596154 CDS YP_004387803.1 330824500 10482947 2011415..2012014 1 NC_015422.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: rpf:Rpic12D_0671 lytic transglycosylase catalytic; lytic transglycosylase catalytic subunit 2012014 10482947 Alide2_1909 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004387803.1 2011415 D 596154 CDS YP_004387804.1 330824501 10482948 2012011..2012577 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: rpf:Rpic12D_0672 hypothetical protein; integrating conjugative element protein 2012577 10482948 Alide2_1910 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387804.1 2012011 D 596154 CDS YP_004387805.1 330824502 10482949 2012598..2014757 1 NC_015422.1 TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1; KEGG: rpf:Rpic12D_0673 hypothetical protein; conjugative coupling factor TraD 2014757 10482949 Alide2_1911 Alicycliphilus denitrificans K601 conjugative coupling factor TraD YP_004387805.1 2012598 D 596154 CDS YP_004387806.1 330824503 10482950 2014754..2015503 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: rpf:Rpic12D_0674 hypothetical protein; integrating conjugative element membrane protein 2015503 10482950 Alide2_1912 Alicycliphilus denitrificans K601 integrating conjugative element membrane protein YP_004387806.1 2014754 D 596154 CDS YP_004387807.1 330824504 10482951 2015617..2016024 1 NC_015422.1 KEGG: rpf:Rpic12D_0675 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD; hypothetical protein 2016024 10482951 Alide2_1913 Alicycliphilus denitrificans K601 hypothetical protein YP_004387807.1 2015617 D 596154 CDS YP_004387808.1 330824505 10482952 2016021..2016260 1 NC_015422.1 TIGRFAM: Protein of unknown function DUF3262; KEGG: rpf:Rpic12D_0676 hypothetical protein; integrating conjugative element protein 2016260 10482952 Alide2_1914 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387808.1 2016021 D 596154 CDS YP_004387809.1 330824506 10482953 2016282..2016659 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: rpf:Rpic12D_0677 hypothetical protein; integrating conjugative element membrane protein 2016659 10482953 Alide2_1915 Alicycliphilus denitrificans K601 integrating conjugative element membrane protein YP_004387809.1 2016282 D 596154 CDS YP_004387810.1 330824507 10482954 2016672..2017100 1 NC_015422.1 TIGRFAM: Protein of unknown function DUF3487; KEGG: rpf:Rpic12D_0678 hypothetical protein; conjugative transfer region protein 2017100 10482954 Alide2_1916 Alicycliphilus denitrificans K601 conjugative transfer region protein YP_004387810.1 2016672 D 596154 CDS YP_004387811.1 330824508 10482955 2017097..2017789 1 NC_015422.1 TIGRFAM: Protein of unknown function DUF2895; KEGG: rpf:Rpic12D_0679 hypothetical protein; integrating conjugative element protein 2017789 10482955 Alide2_1917 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387811.1 2017097 D 596154 CDS YP_004387812.1 330824509 10482956 2017786..2018715 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4704; KEGG: rpf:Rpic12D_0680 hypothetical protein; integrating conjugative element protein 2018715 10482956 Alide2_1918 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387812.1 2017786 D 596154 CDS YP_004387813.1 330824510 10482957 2018705..2020174 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: rpf:Rpic12D_0681 hypothetical protein; integrating conjugative element protein 2020174 10482957 Alide2_1919 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387813.1 2018705 D 596154 CDS YP_004387814.1 330824511 10482958 2020155..2020589 1 NC_015422.1 TIGRFAM: Conjugative transfer region lipoprotein; KEGG: rpf:Rpic12D_0682 hypothetical protein; conjugative transfer region lipoprotein 2020589 10482958 Alide2_1920 Alicycliphilus denitrificans K601 conjugative transfer region lipoprotein YP_004387814.1 2020155 D 596154 CDS YP_004387815.1 330824512 10482959 2020589..2023471 1 NC_015422.1 TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: rpf:Rpic12D_0683 hypothetical protein; conjugative transfer ATPase 2023471 10482959 Alide2_1921 Alicycliphilus denitrificans K601 conjugative transfer ATPase YP_004387815.1 2020589 D 596154 CDS YP_004387816.1 330824513 10482960 2023482..2024237 1 NC_015422.1 PFAM: DSBA-like thioredoxin domain; KEGG: rpf:Rpic12D_0684 DsbA oxidoreductase; DSBA oxidoreductase 2024237 10482960 Alide2_1922 Alicycliphilus denitrificans K601 DSBA oxidoreductase YP_004387816.1 2023482 D 596154 CDS YP_004387817.1 330824514 10482961 2024431..2025018 1 NC_015422.1 KEGG: net:Neut_0078 hypothetical protein; hypothetical protein 2025018 10482961 Alide2_1923 Alicycliphilus denitrificans K601 hypothetical protein YP_004387817.1 2024431 D 596154 CDS YP_004387818.1 330824515 10482962 2025193..2025801 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: maq:Maqu_1250 TetR family transcriptional regulator; TetR family transcriptional regulator 2025801 10482962 Alide2_1924 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004387818.1 2025193 D 596154 CDS YP_004387819.1 330824516 10482963 2025798..2026949 1 NC_015422.1 KEGG: ppd:Ppro_3851 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 2026949 10482963 Alide2_1925 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004387819.1 2025798 D 596154 CDS YP_004387820.1 330824517 10482964 2026946..2028151 1 NC_015422.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: ppd:Ppro_3850 hypothetical protein; hypothetical protein 2028151 10482964 Alide2_1926 Alicycliphilus denitrificans K601 hypothetical protein YP_004387820.1 2026946 D 596154 CDS YP_004387821.1 330824518 10482965 2028153..2028863 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: ppd:Ppro_3849 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 2028863 10482965 Alide2_1927 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004387821.1 2028153 D 596154 CDS YP_004387822.1 330824519 10482966 2028892..2029365 1 NC_015422.1 KEGG: ppd:Ppro_3848 hypothetical protein; hypothetical protein 2029365 10482966 Alide2_1928 Alicycliphilus denitrificans K601 hypothetical protein YP_004387822.1 2028892 D 596154 CDS YP_004387823.1 330824520 10482967 2029352..2030839 1 NC_015422.1 KEGG: maq:Maqu_1255 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 2030839 10482967 Alide2_1929 Alicycliphilus denitrificans K601 NodT family RND efflux system outer membrane lipoprotein YP_004387823.1 2029352 D 596154 CDS YP_004387824.1 330824521 10482968 2030999..2032681 1 NC_015422.1 PFAM: Integrase, catalytic core; Transposase-like, Mu, C-terminal; KEGG: bxe:Bxe_C1173 integrase TniA; integrase catalytic subunit 2032681 10482968 Alide2_1930 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004387824.1 2030999 D 596154 CDS YP_004387825.1 330824522 10482969 2032684..2033592 1 NC_015422.1 KEGG: bxe:Bxe_C1174 transposition protein TniB; PFAM: Bacterial TniB; SMART: ATPase, AAA+ type, core; TniB family protein 2033592 10482969 Alide2_1931 Alicycliphilus denitrificans K601 TniB family protein YP_004387825.1 2032684 D 596154 CDS YP_004387826.1 330824523 10482970 2033589..2034806 1 NC_015422.1 KEGG: bxe:Bxe_C1175 transposition protein TniQ; manually curated; PFAM: TniQ; TniQ family protein 2034806 10482970 Alide2_1932 Alicycliphilus denitrificans K601 TniQ family protein YP_004387826.1 2033589 D 596154 CDS YP_004387827.1 330824524 10482972 2035040..2035489 1 NC_015422.1 KEGG: shn:Shewana3_1247 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02391; PFAM: Conserved hypothetical protein CHP02391; hypothetical protein 2035489 10482972 Alide2_1934 Alicycliphilus denitrificans K601 hypothetical protein YP_004387827.1 2035040 D 596154 CDS YP_004387828.1 330824525 10482973 complement(2035433..2036503) 1 NC_015422.1 PFAM: Aminoglycoside phosphotransferase; KEGG: bxe:Bxe_C1178 hypothetical protein; aminoglycoside phosphotransferase 2036503 10482973 Alide2_1935 Alicycliphilus denitrificans K601 aminoglycoside phosphotransferase YP_004387828.1 2035433 R 596154 CDS YP_004387829.1 330824526 10482974 complement(2036519..2038321) 1 NC_015422.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: art:Arth_4258 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; xenobiotic-transporting ATPase 2038321 10482974 Alide2_1936 Alicycliphilus denitrificans K601 xenobiotic-transporting ATPase YP_004387829.1 2036519 R 596154 CDS YP_004387830.1 330824527 10482975 complement(2038318..2040144) 1 NC_015422.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: art:Arth_4257 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; xenobiotic-transporting ATPase 2040144 10482975 Alide2_1937 Alicycliphilus denitrificans K601 xenobiotic-transporting ATPase YP_004387830.1 2038318 R 596154 CDS YP_004387831.1 330824528 10482976 complement(2040191..2040550) 1 NC_015422.1 KEGG: bvi:Bcep1808_7475 hypothetical protein; hypothetical protein 2040550 10482976 Alide2_1938 Alicycliphilus denitrificans K601 hypothetical protein YP_004387831.1 2040191 R 596154 CDS YP_004387832.1 330824529 10482977 complement(2040610..2041512) 1 NC_015422.1 PFAM: Uncharacterised protein family, LppY/LpqO; KEGG: pop:POPTR_594759 hypothetical protein; hypothetical protein 2041512 10482977 Alide2_1939 Alicycliphilus denitrificans K601 hypothetical protein YP_004387832.1 2040610 R 596154 CDS YP_004387833.1 330824530 10482978 complement(2041585..2041965) 1 NC_015422.1 KEGG: bxe:Bxe_C1203 hypothetical protein; hypothetical protein 2041965 10482978 Alide2_1940 Alicycliphilus denitrificans K601 hypothetical protein YP_004387833.1 2041585 R 596154 CDS YP_004387834.1 330824531 10482979 complement(2041990..2042448) 1 NC_015422.1 PFAM: Chromate resistance exported protein; KEGG: bxe:Bxe_C1204 hypothetical protein; chromate resistance exported protein 2042448 10482979 Alide2_1941 Alicycliphilus denitrificans K601 chromate resistance exported protein YP_004387834.1 2041990 R 596154 CDS YP_004387835.1 330824532 10482980 complement(2042453..2043361) 1 NC_015422.1 KEGG: bxe:Bxe_C1205 putative superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; SMART: Rhodanese-like; manganese/iron superoxide dismutase 2043361 10482980 Alide2_1942 Alicycliphilus denitrificans K601 manganese/iron superoxide dismutase YP_004387835.1 2042453 R 596154 CDS YP_004387836.1 330824533 10482981 complement(2043423..2044619) 1 NC_015422.1 KEGG: bxe:Bxe_C1206 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter; chromate transporter 2044619 10482981 Alide2_1943 Alicycliphilus denitrificans K601 chromate transporter YP_004387836.1 2043423 R 596154 CDS YP_004387837.1 330824534 10482982 complement(2044676..2045638) 1 NC_015422.1 PFAM: Chromate resistance exported protein; KEGG: bxe:Bxe_C1207 putative chromate resistance protein; chromate resistance exported protein 2045638 10482982 Alide2_1944 Alicycliphilus denitrificans K601 chromate resistance exported protein YP_004387837.1 2044676 R 596154 CDS YP_004387838.1 330824535 10482983 2046800..2047393 1 NC_015422.1 KEGG: bxe:Bxe_C1209 putative resolvase; PFAM: Resolvase, N-terminal; Protein of unknown function DUF932; SMART: Resolvase, N-terminal; resolvase domain-containing protein 2047393 10482983 Alide2_1945 Alicycliphilus denitrificans K601 resolvase domain-containing protein YP_004387838.1 2046800 D 596154 CDS YP_004387839.1 330824536 10482984 complement(2047432..2047752) 1 NC_015422.1 manually curated; KEGG: bxe:Bxe_C1210 transposon modulator protein; transposon modulator protein 2047752 10482984 Alide2_1946 Alicycliphilus denitrificans K601 transposon modulator protein YP_004387839.1 2047432 R 596154 CDS YP_004387840.1 330824537 10482985 complement(2047768..2048004) 1 NC_015422.1 PFAM: MerE; KEGG: bxe:Bxe_C1211 putative mercury resistance protein; MerE family protein 2048004 10482985 Alide2_1947 Alicycliphilus denitrificans K601 MerE family protein YP_004387840.1 2047768 R 596154 CDS YP_004387841.1 330824538 10482986 complement(2048001..2048366) 1 NC_015422.1 TIGRFAM: Mercuric resistence transcriptional repressor protein MerD; PFAM: HTH transcriptional regulator, MerR; KEGG: bxe:Bxe_C1212 transcriptional regulator MerD; SMART: HTH transcriptional regulator, MerR; mercuric resistance transcriptional repressor protein MerD 2048366 10482986 Alide2_1948 Alicycliphilus denitrificans K601 mercuric resistance transcriptional repressor protein MerD YP_004387841.1 2048001 R 596154 CDS YP_004387842.1 330824539 10482987 complement(2048384..2050069) 1 NC_015422.1 TIGRFAM: Mercury reductase, MerA; KEGG: bxe:Bxe_C1213 putative mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; mercuric reductase 2050069 10482987 Alide2_1949 Alicycliphilus denitrificans K601 mercuric reductase YP_004387842.1 2048384 R 596154 CDS YP_004387843.1 330824540 10482988 complement(2050108..2050533) 1 NC_015422.1 KEGG: mms:mma_1750 putative mercury transport protein MerC; mercury transport protein MerC 2050533 10482988 Alide2_1950 Alicycliphilus denitrificans K601 mercury transport protein MerC YP_004387843.1 2050108 R 596154 CDS YP_004387844.1 330824541 10482989 complement(2050561..2050836) 1 NC_015422.1 KEGG: mms:mma_1751 mercuric transport periplasmic binding protein; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport periplasmic protein 2050836 10482989 Alide2_1951 Alicycliphilus denitrificans K601 mercuric transport periplasmic protein YP_004387844.1 2050561 R 596154 CDS YP_004387845.1 330824542 10482990 complement(2050850..2051200) 1 NC_015422.1 PFAM: Mercuric transport protein MerT; KEGG: bxe:Bxe_C1216 putative mercuric transport protein; mercuric transport protein MerT 2051200 10482990 Alide2_1952 Alicycliphilus denitrificans K601 mercuric transport protein MerT YP_004387845.1 2050850 R 596154 CDS YP_004387846.1 330824543 10482991 2051272..2051706 1 NC_015422.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: bxe:Bxe_C1217 putative transcriptional regulator MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 2051706 10482991 Alide2_1953 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004387846.1 2051272 D 596154 CDS YP_004387847.1 330824544 10482994 2055403..2055849 1 NC_015422.1 KEGG: rpf:Rpic12D_0686 protein of unknown function DUF1525; TIGRFAM: Integrating conjugative element protein, PFL4709; PFAM: Integrating conjugative element protein, PFL4709; integrating conjugative element protein 2055849 10482994 Alide2_1956 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387847.1 2055403 D 596154 CDS YP_004387848.1 330824545 10482995 2055846..2056796 1 NC_015422.1 KEGG: rpf:Rpic12D_0687 protein of unknown function DUF1527; TIGRFAM: Integrating conjugative element protein, PFL4710; PFAM: Integrating conjugative element protein, PFL4710; integrating conjugative element protein 2056796 10482995 Alide2_1957 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387848.1 2055846 D 596154 CDS YP_004387849.1 330824546 10482996 2056807..2058207 1 NC_015422.1 TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: rpf:Rpic12D_0688 hypothetical protein; integrating conjugative element protein 2058207 10482996 Alide2_1958 Alicycliphilus denitrificans K601 integrating conjugative element protein YP_004387849.1 2056807 D 596154 CDS YP_004387850.1 330824547 10482997 2058207..2058566 1 NC_015422.1 KEGG: rpf:Rpic12D_0689 hypothetical protein; hypothetical protein 2058566 10482997 Alide2_1959 Alicycliphilus denitrificans K601 hypothetical protein YP_004387850.1 2058207 D 596154 CDS YP_004387851.1 330824548 10482998 2058590..2060107 1 NC_015422.1 KEGG: rpf:Rpic12D_0690 hypothetical protein; hypothetical protein 2060107 10482998 Alide2_1960 Alicycliphilus denitrificans K601 hypothetical protein YP_004387851.1 2058590 D 596154 CDS YP_004387852.1 330824549 10482999 complement(2060108..2060479) 1 NC_015422.1 KEGG: rpf:Rpic12D_0691 hypothetical protein; hypothetical protein 2060479 10482999 Alide2_1961 Alicycliphilus denitrificans K601 hypothetical protein YP_004387852.1 2060108 R 596154 CDS YP_004387853.1 330824550 10483000 complement(2060602..2061066) 1 NC_015422.1 KEGG: dac:Daci_4188 hypothetical protein; hypothetical protein 2061066 10483000 Alide2_1962 Alicycliphilus denitrificans K601 hypothetical protein YP_004387853.1 2060602 R 596154 CDS YP_004387854.1 330824551 10483001 complement(2061066..2061383) 1 NC_015422.1 TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: dac:Daci_4189 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted; AbrB family transcriptional regulator 2061383 10483001 Alide2_1963 Alicycliphilus denitrificans K601 AbrB family transcriptional regulator YP_004387854.1 2061066 R 596154 CDS YP_004387855.1 330824552 10483002 2061697..2063562 1 NC_015422.1 KEGG: rpf:Rpic12D_0694 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal; integrating conjugative element relaxase 2063562 10483002 Alide2_1964 Alicycliphilus denitrificans K601 integrating conjugative element relaxase YP_004387855.1 2061697 D 596154 CDS YP_004387856.1 330824553 10483003 complement(2063589..2063894) 1 NC_015422.1 KEGG: rpf:Rpic12D_0695 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 2063894 10483003 Alide2_1965 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004387856.1 2063589 R 596154 CDS YP_004387857.1 330824554 10483004 2064013..2064633 1 NC_015422.1 PFAM: LysR, substrate-binding; KEGG: rpf:Rpic12D_0696 transcriptional regulator, LysR family; LysR family transcriptional regulator 2064633 10483004 Alide2_1966 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387857.1 2064013 D 596154 CDS YP_004387858.1 330824555 10483005 complement(2064646..2066568) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: dac:Daci_4139 integrase family protein; integrase family protein 2066568 10483005 Alide2_1967 Alicycliphilus denitrificans K601 integrase family protein YP_004387858.1 2064646 R 596154 CDS YP_004387859.1 330824556 10483007 complement(2066998..2067540) 1 NC_015422.1 KEGG: ajs:Ajs_1664 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2; BadM/Rrf2 family transcriptional regulator 2067540 10483007 Alide2_1968 Alicycliphilus denitrificans K601 BadM/Rrf2 family transcriptional regulator YP_004387859.1 2066998 R 596154 CDS YP_004387860.1 330824557 10483008 2068159..2068419 1 NC_015422.1 KEGG: dia:Dtpsy_2037 hypothetical protein; hypothetical protein 2068419 10483008 Alide2_1969 Alicycliphilus denitrificans K601 hypothetical protein YP_004387860.1 2068159 D 596154 CDS YP_004387861.1 330824558 10483009 complement(2068431..2069306) 1 NC_015422.1 TIGRFAM: Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase; KEGG: dia:Dtpsy_2036 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase proenzyme 2069306 10483009 Alide2_1970 Alicycliphilus denitrificans K601 phosphatidylserine decarboxylase proenzyme YP_004387861.1 2068431 R 596154 CDS YP_004387862.1 330824559 10483010 2069514..2070692 1 NC_015422.1 manually curated; PFAM: Cystathionine beta-synthase, core; HPP; KEGG: ajs:Ajs_1669 CBS domain-containing protein; SMART: Cystathionine beta-synthase, core; hypothetical protein 2070692 10483010 Alide2_1971 Alicycliphilus denitrificans K601 hypothetical protein YP_004387862.1 2069514 D 596154 CDS YP_004387863.1 330824560 10483011 2070940..2071200 1 NC_015422.1 KEGG: dia:Dtpsy_2034 translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type; translation initiation factor IF-1 2071200 10483011 Alide2_1972 Alicycliphilus denitrificans K601 translation initiation factor IF-1 YP_004387863.1 2070940 D 596154 CDS YP_004387864.1 330824561 10483013 2071571..2072620 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: ajs:Ajs_4119 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 2072620 10483013 Alide2_1973 Alicycliphilus denitrificans K601 diguanylate cyclase YP_004387864.1 2071571 D 596154 CDS YP_004387865.1 330824562 10483014 2072626..2073399 1 NC_015422.1 PFAM: Protein of unknown function DUF1624; KEGG: ajs:Ajs_1672 hypothetical protein; hypothetical protein 2073399 10483014 Alide2_1974 Alicycliphilus denitrificans K601 hypothetical protein YP_004387865.1 2072626 D 596154 CDS YP_004387866.1 330824563 10483015 complement(2073411..2073713) 1 NC_015422.1 TIGRFAM: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_1390 integration host factor, beta subunit; SMART: Histone-like bacterial DNA-binding protein; integration host factor subunit beta 2073713 10483015 Alide2_1975 Alicycliphilus denitrificans K601 integration host factor subunit beta YP_004387866.1 2073411 R 596154 CDS YP_004387867.1 330824564 10483016 complement(2073833..2075518) 1 NC_015422.1 TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA-binding domain; KEGG: dia:Dtpsy_1391 30S ribosomal protein S1; SMART: RNA-binding domain, S1; 30S ribosomal protein S1 2075518 10483016 Alide2_1976 Alicycliphilus denitrificans K601 30S ribosomal protein S1 YP_004387867.1 2073833 R 596154 CDS YP_004387868.1 330824565 10483017 complement(2075699..2077723) 1 NC_015422.1 PFAM: Enolpyruvate transferase domain; Cytidylate kinase domain; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; Cytidylate kinase; HAMAP: Cytidylate kinase; 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: dia:Dtpsy_1392 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; cytidylate kinase 2077723 10483017 Alide2_1977 Alicycliphilus denitrificans K601 cytidylate kinase YP_004387868.1 2075699 R 596154 CDS YP_004387869.1 330824566 10483018 complement(2077723..2078607) 1 NC_015422.1 KEGG: dia:Dtpsy_1393 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; prephenate dehydrogenase 2078607 10483018 Alide2_1978 Alicycliphilus denitrificans K601 prephenate dehydrogenase YP_004387869.1 2077723 R 596154 CDS YP_004387870.1 330824567 10483019 complement(2078618..2079718) 1 NC_015422.1 TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; KEGG: dia:Dtpsy_1394 chorismate mutase; SMART: Chorismate mutase; chorismate mutase 2079718 10483019 Alide2_1979 Alicycliphilus denitrificans K601 chorismate mutase YP_004387870.1 2078618 R 596154 CDS YP_004387871.1 330824568 10483020 complement(2079837..2080946) 1 NC_015422.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Phosphoserine aminotransferase, subgroup; HAMAP: Phosphoserine aminotransferase; KEGG: dia:Dtpsy_1395 phosphoserine aminotransferase; phosphoserine aminotransferase 2080946 10483020 Alide2_1980 Alicycliphilus denitrificans K601 phosphoserine aminotransferase YP_004387871.1 2079837 R 596154 CDS YP_004387872.1 330824569 10483021 complement(2081013..2083703) 1 NC_015422.1 SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: ajs:Ajs_2464 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; DNA gyrase subunit A 2083703 10483021 Alide2_1981 Alicycliphilus denitrificans K601 DNA gyrase subunit A YP_004387872.1 2081013 R 596154 CDS YP_004387873.1 330824570 10483022 2083880..2084539 1 NC_015422.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_1397 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2084539 10483022 Alide2_1982 Alicycliphilus denitrificans K601 OmpA/MotB domain-containing protein YP_004387873.1 2083880 D 596154 CDS YP_004387874.1 330824571 10483023 2084619..2085332 1 NC_015422.1 TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; KEGG: dia:Dtpsy_1398 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11; ubiquinone biosynthesis O-methyltransferase 2085332 10483023 Alide2_1983 Alicycliphilus denitrificans K601 ubiquinone biosynthesis O-methyltransferase YP_004387874.1 2084619 D 596154 CDS YP_004387875.1 330824572 10483024 2085329..2086006 1 NC_015422.1 TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: ajs:Ajs_2461 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase 2086006 10483024 Alide2_1984 Alicycliphilus denitrificans K601 phosphoglycolate phosphatase YP_004387875.1 2085329 D 596154 CDS YP_004387876.1 330824573 10483026 complement(2086706..2087590) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bvi:Bcep1808_7210 LysR family transcriptional regulator; LysR family transcriptional regulator 2087590 10483026 Alide2_1985 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387876.1 2086706 R 596154 CDS YP_004387877.1 330824574 10483027 complement(2087587..2088597) 1 NC_015422.1 KEGG: bvi:Bcep1808_7212 phosphonate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphonate dehydrogenase 2088597 10483027 Alide2_1986 Alicycliphilus denitrificans K601 phosphonate dehydrogenase YP_004387877.1 2087587 R 596154 CDS YP_004387878.1 330824575 10483028 complement(2088622..2089419) 1 NC_015422.1 KEGG: mms:mma_3042 phosphonate ABC-type transport system permease protein; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter permease 2089419 10483028 Alide2_1987 Alicycliphilus denitrificans K601 phosphonate ABC transporter permease YP_004387878.1 2088622 R 596154 CDS YP_004387879.1 330824576 10483029 complement(2089432..2090292) 1 NC_015422.1 TIGRFAM: Phosphonate-binding periplasmic protein; KEGG: mms:mma_3041 phosphonate ABC-type transport system substrate-binding protein; phosphonate ABC transporter substrate-binding protein 2090292 10483029 Alide2_1988 Alicycliphilus denitrificans K601 phosphonate ABC transporter substrate-binding protein YP_004387879.1 2089432 R 596154 CDS YP_004387880.1 330824577 10483030 complement(2090316..2091113) 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, phosphonate import, PhnC; KEGG: mms:mma_3040 phosphonate ABC-type transport system ATP-binding protein; PFAM: ABC transporter-like; phosphonate ABC transporter ATPase 2091113 10483030 Alide2_1989 Alicycliphilus denitrificans K601 phosphonate ABC transporter ATPase YP_004387880.1 2090316 R 596154 CDS YP_004387881.1 330824578 10483031 2091367..2092086 1 NC_015422.1 PFAM: Domain of unknown function DUF88; KEGG: cvi:CV_0373 hypothetical protein; hypothetical protein 2092086 10483031 Alide2_1990 Alicycliphilus denitrificans K601 hypothetical protein YP_004387881.1 2091367 D 596154 CDS YP_004387882.1 330824579 10483032 complement(2092184..2092663) 1 NC_015422.1 KEGG: rsl:RPSI07_0201 putative bacteriophage-related protein; bacteriophage-like protein 2092663 10483032 Alide2_1991 Alicycliphilus denitrificans K601 bacteriophage-like protein YP_004387882.1 2092184 R 596154 CDS YP_004387883.1 330824580 10483033 complement(2092660..2093031) 1 NC_015422.1 KEGG: rsl:RPSI07_0202 putative bacteriophage-related protein; bacteriophage-like protein 2093031 10483033 Alide2_1992 Alicycliphilus denitrificans K601 bacteriophage-like protein YP_004387883.1 2092660 R 596154 CDS YP_004387884.1 330824581 10483034 complement(2093031..2094410) 1 NC_015422.1 KEGG: nde:NIDE0070 putative site-specific recombinase, resolvase family (phage related); PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal; resolvase domain-containing protein 2094410 10483034 Alide2_1993 Alicycliphilus denitrificans K601 resolvase domain-containing protein YP_004387884.1 2093031 R 596154 CDS YP_004387885.1 330824582 10483035 complement(2094407..2094856) 1 NC_015422.1 KEGG: mfa:Mfla_1156 hypothetical protein; hypothetical protein 2094856 10483035 Alide2_1994 Alicycliphilus denitrificans K601 hypothetical protein YP_004387885.1 2094407 R 596154 CDS YP_004387886.1 330824583 10483036 complement(2094856..2095047) 1 NC_015422.1 KEGG: mfa:Mfla_1157 hypothetical protein; hypothetical protein 2095047 10483036 Alide2_1995 Alicycliphilus denitrificans K601 hypothetical protein YP_004387886.1 2094856 R 596154 CDS YP_004387887.1 330824584 10483037 2095228..2095506 1 NC_015422.1 KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 2095506 10483037 Alide2_1996 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004387887.1 2095228 D 596154 CDS YP_004387888.1 330824585 10483038 2095507..2096319 1 NC_015422.1 KEGG: nde:NIDE0076 hypothetical protein; hypothetical protein 2096319 10483038 Alide2_1997 Alicycliphilus denitrificans K601 hypothetical protein YP_004387888.1 2095507 D 596154 CDS YP_004387889.1 330824586 10483039 2096420..2097844 1 NC_015422.1 KEGG: nde:NIDE0077 hypothetical protein; hypothetical protein 2097844 10483039 Alide2_1998 Alicycliphilus denitrificans K601 hypothetical protein YP_004387889.1 2096420 D 596154 CDS YP_004387890.1 330824587 10483040 2097856..2098794 1 NC_015422.1 KEGG: nde:NIDE0078 hypothetical protein; hypothetical protein 2098794 10483040 Alide2_1999 Alicycliphilus denitrificans K601 hypothetical protein YP_004387890.1 2097856 D 596154 CDS YP_004387891.1 330824588 10483041 2098880..2099137 1 NC_015422.1 KEGG: mca:MCA2640 hypothetical protein; hypothetical protein 2099137 10483041 Alide2_2000 Alicycliphilus denitrificans K601 hypothetical protein YP_004387891.1 2098880 D 596154 CDS YP_004387892.1 330824589 10483042 2099149..2099631 1 NC_015422.1 KEGG: mms:mma_2689 hypothetical protein; hypothetical protein 2099631 10483042 Alide2_2001 Alicycliphilus denitrificans K601 hypothetical protein YP_004387892.1 2099149 D 596154 CDS YP_004387893.1 330824590 10483043 2099628..2100476 1 NC_015422.1 KEGG: nde:NIDE0081 hypothetical protein; hypothetical protein 2100476 10483043 Alide2_2002 Alicycliphilus denitrificans K601 hypothetical protein YP_004387893.1 2099628 D 596154 CDS YP_004387894.1 330824591 10483044 2100482..2101105 1 NC_015422.1 KEGG: dia:Dtpsy_3225 hypothetical protein; hypothetical protein 2101105 10483044 Alide2_2003 Alicycliphilus denitrificans K601 hypothetical protein YP_004387894.1 2100482 D 596154 CDS YP_004387895.1 330824592 10483045 2101117..2101971 1 NC_015422.1 PFAM: Uncharacterised protein domain P63C; KEGG: nde:NIDE0083 hypothetical protein; hypothetical protein 2101971 10483045 Alide2_2004 Alicycliphilus denitrificans K601 hypothetical protein YP_004387895.1 2101117 D 596154 CDS YP_004387896.1 330824593 10483046 2101968..2102468 1 NC_015422.1 KEGG: nde:NIDE0084 hypothetical protein; hypothetical protein 2102468 10483046 Alide2_2005 Alicycliphilus denitrificans K601 hypothetical protein YP_004387896.1 2101968 D 596154 CDS YP_004387897.1 330824594 10483047 2102465..2103199 1 NC_015422.1 KEGG: dia:Dtpsy_3223 hypothetical protein; hypothetical protein 2103199 10483047 Alide2_2006 Alicycliphilus denitrificans K601 hypothetical protein YP_004387897.1 2102465 D 596154 CDS YP_004387898.1 330824595 10483048 2103196..2103441 1 NC_015422.1 KEGG: nde:NIDE0086 hypothetical protein; hypothetical protein 2103441 10483048 Alide2_2007 Alicycliphilus denitrificans K601 hypothetical protein YP_004387898.1 2103196 D 596154 CDS YP_004387899.1 330824596 10483049 2103438..2105738 1 NC_015422.1 TIGRFAM: DNA primase, phage/plasmid; PFAM: Phage/plasmid primase, P4, C-terminal; KEGG: dia:Dtpsy_3221 hypothetical protein; SMART: Phage/plasmid primase, P4, C-terminal; phage/plasmid primase, P4 family 2105738 10483049 Alide2_2008 Alicycliphilus denitrificans K601 phage/plasmid primase, P4 family YP_004387899.1 2103438 D 596154 CDS YP_004387900.1 330824597 10483050 2105880..2106356 1 NC_015422.1 KEGG: dia:Dtpsy_3220 hypothetical protein; hypothetical protein 2106356 10483050 Alide2_2009 Alicycliphilus denitrificans K601 hypothetical protein YP_004387900.1 2105880 D 596154 CDS YP_004387901.1 330824598 10483051 2106358..2106561 1 NC_015422.1 KEGG: mms:mma_2698 hypothetical protein; hypothetical protein 2106561 10483051 Alide2_2010 Alicycliphilus denitrificans K601 hypothetical protein YP_004387901.1 2106358 D 596154 CDS YP_004387902.1 330824599 10483052 2106554..2106970 1 NC_015422.1 KEGG: sml:Smlt1883 hypothetical protein; hypothetical protein 2106970 10483052 Alide2_2011 Alicycliphilus denitrificans K601 hypothetical protein YP_004387902.1 2106554 D 596154 CDS YP_004387903.1 330824600 10483053 2107316..2108731 1 NC_015422.1 KEGG: dia:Dtpsy_3217 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease; DNA methylase N-4/N-6 domain-containing protein 2108731 10483053 Alide2_2012 Alicycliphilus denitrificans K601 DNA methylase N-4/N-6 domain-containing protein YP_004387903.1 2107316 D 596154 CDS YP_004387904.1 330824601 10483054 2108728..2109990 1 NC_015422.1 KEGG: dia:Dtpsy_3216 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease; DNA methylase N-4/N-6 domain-containing protein 2109990 10483054 Alide2_2013 Alicycliphilus denitrificans K601 DNA methylase N-4/N-6 domain-containing protein YP_004387904.1 2108728 D 596154 CDS YP_004387905.1 330824602 10483055 complement(2109954..2110322) 1 NC_015422.1 KEGG: mms:mma_2759 hypothetical protein; hypothetical protein 2110322 10483055 Alide2_2014 Alicycliphilus denitrificans K601 hypothetical protein YP_004387905.1 2109954 R 596154 CDS YP_004387906.1 330824603 10483056 complement(2110420..2110941) 1 NC_015422.1 KEGG: mms:mma_2762 hypothetical protein; hypothetical protein 2110941 10483056 Alide2_2015 Alicycliphilus denitrificans K601 hypothetical protein YP_004387906.1 2110420 R 596154 CDS YP_004387907.1 330824604 10483057 complement(2111037..2111243) 1 NC_015422.1 KEGG: dia:Dtpsy_3211 hypothetical protein; hypothetical protein 2111243 10483057 Alide2_2016 Alicycliphilus denitrificans K601 hypothetical protein YP_004387907.1 2111037 R 596154 CDS YP_004387908.1 330824605 10483058 2111350..2111895 1 NC_015422.1 KEGG: sml:Smlt1874 hypothetical protein; hypothetical protein 2111895 10483058 Alide2_2017 Alicycliphilus denitrificans K601 hypothetical protein YP_004387908.1 2111350 D 596154 CDS YP_004387909.1 330824606 10483059 2111895..2113853 1 NC_015422.1 PFAM: Phage terminase GpA; KEGG: dia:Dtpsy_3209 terminase GpA; terminase GpA 2113853 10483059 Alide2_2018 Alicycliphilus denitrificans K601 terminase GpA YP_004387909.1 2111895 D 596154 CDS YP_004387910.1 330824607 10483060 2113883..2114374 1 NC_015422.1 KEGG: mms:mma_2706 hypothetical protein; hypothetical protein 2114374 10483060 Alide2_2019 Alicycliphilus denitrificans K601 hypothetical protein YP_004387910.1 2113883 D 596154 CDS YP_004387911.1 330824608 10483061 2114374..2114766 1 NC_015422.1 KEGG: mms:mma_2767 hypothetical protein; hypothetical protein 2114766 10483061 Alide2_2020 Alicycliphilus denitrificans K601 hypothetical protein YP_004387911.1 2114374 D 596154 CDS YP_004387912.1 330824609 10483062 2114766..2114987 1 NC_015422.1 KEGG: rsl:RPSI07_0240 hypothetical protein; hypothetical protein 2114987 10483062 Alide2_2021 Alicycliphilus denitrificans K601 hypothetical protein YP_004387912.1 2114766 D 596154 CDS YP_004387913.1 330824610 10483063 2114989..2116503 1 NC_015422.1 manually curated; TIGRFAM: Phage portal protein, lambda; KEGG: dia:Dtpsy_3207 phage portal protein, lambda family; PFAM: Phage portal protein, lambda; phage portal protein, lambda family 2116503 10483063 Alide2_2022 Alicycliphilus denitrificans K601 phage portal protein, lambda family YP_004387913.1 2114989 D 596154 CDS YP_004387914.1 330824611 10483064 2116537..2117778 1 NC_015422.1 PFAM: Peptidase S49; KEGG: dia:Dtpsy_3206 peptidase S49; peptidase S49 2117778 10483064 Alide2_2023 Alicycliphilus denitrificans K601 peptidase S49 YP_004387914.1 2116537 D 596154 CDS YP_004387915.1 330824612 10483065 2117780..2118157 1 NC_015422.1 KEGG: dia:Dtpsy_3205 hypothetical protein; hypothetical protein 2118157 10483065 Alide2_2024 Alicycliphilus denitrificans K601 hypothetical protein YP_004387915.1 2117780 D 596154 CDS YP_004387916.1 330824613 10483066 2118160..2119164 1 NC_015422.1 KEGG: dia:Dtpsy_3204 hypothetical protein; hypothetical protein 2119164 10483066 Alide2_2025 Alicycliphilus denitrificans K601 hypothetical protein YP_004387916.1 2118160 D 596154 CDS YP_004387917.1 330824614 10483067 2119164..2119466 1 NC_015422.1 KEGG: dia:Dtpsy_3203 hypothetical protein; hypothetical protein 2119466 10483067 Alide2_2026 Alicycliphilus denitrificans K601 hypothetical protein YP_004387917.1 2119164 D 596154 CDS YP_004387918.1 330824615 10483068 2119471..2119917 1 NC_015422.1 KEGG: dia:Dtpsy_3202 signal peptide protein; hypothetical protein 2119917 10483068 Alide2_2027 Alicycliphilus denitrificans K601 hypothetical protein YP_004387918.1 2119471 D 596154 CDS YP_004387919.1 330824616 10483069 2119923..2120144 1 NC_015422.1 KEGG: dia:Dtpsy_3201 hypothetical protein; hypothetical protein 2120144 10483069 Alide2_2028 Alicycliphilus denitrificans K601 hypothetical protein YP_004387919.1 2119923 D 596154 CDS YP_004387920.1 330824617 10483070 2120141..2120893 1 NC_015422.1 KEGG: dia:Dtpsy_3200 hypothetical protein; hypothetical protein 2120893 10483070 Alide2_2029 Alicycliphilus denitrificans K601 hypothetical protein YP_004387920.1 2120141 D 596154 CDS YP_004387921.1 330824618 10483071 2120905..2121303 1 NC_015422.1 KEGG: dia:Dtpsy_3199 hypothetical protein; hypothetical protein 2121303 10483071 Alide2_2030 Alicycliphilus denitrificans K601 hypothetical protein YP_004387921.1 2120905 D 596154 CDS YP_004387922.1 330824619 10483072 2121300..2121509 1 NC_015422.1 manually curated; KEGG: rso:RSc0865 hypothetical protein; hypothetical protein 2121509 10483072 Alide2_2031 Alicycliphilus denitrificans K601 hypothetical protein YP_004387922.1 2121300 D 596154 CDS YP_004387923.1 330824620 10483073 2121484..2122128 1 NC_015422.1 KEGG: dia:Dtpsy_3198 hypothetical protein; hypothetical protein 2122128 10483073 Alide2_2032 Alicycliphilus denitrificans K601 hypothetical protein YP_004387923.1 2121484 D 596154 CDS YP_004387924.1 330824621 10483074 2122130..2126167 1 NC_015422.1 TIGRFAM: Tape measure domain; KEGG: dia:Dtpsy_3197 phage tape measure protein; phage tape measure protein 2126167 10483074 Alide2_2033 Alicycliphilus denitrificans K601 phage tape measure protein YP_004387924.1 2122130 D 596154 CDS YP_004387925.1 330824622 10483075 2126204..2126614 1 NC_015422.1 KEGG: dia:Dtpsy_3196 hypothetical protein; hypothetical protein 2126614 10483075 Alide2_2034 Alicycliphilus denitrificans K601 hypothetical protein YP_004387925.1 2126204 D 596154 CDS YP_004387926.1 330824623 10483076 2126614..2130222 1 NC_015422.1 KEGG: dia:Dtpsy_3195 hypothetical protein; hypothetical protein 2130222 10483076 Alide2_2035 Alicycliphilus denitrificans K601 hypothetical protein YP_004387926.1 2126614 D 596154 CDS YP_004387927.1 330824624 10483077 2130270..2131535 1 NC_015422.1 KEGG: dia:Dtpsy_3194 hypothetical protein; hypothetical protein 2131535 10483077 Alide2_2036 Alicycliphilus denitrificans K601 hypothetical protein YP_004387927.1 2130270 D 596154 CDS YP_004387928.1 330824625 10483078 2131539..2132624 1 NC_015422.1 KEGG: mca:MCA2674 hypothetical protein; hypothetical protein 2132624 10483078 Alide2_2037 Alicycliphilus denitrificans K601 hypothetical protein YP_004387928.1 2131539 D 596154 CDS YP_004387929.1 330824626 10483079 2132621..2133016 1 NC_015422.1 KEGG: mca:MCA2675 hypothetical protein; hypothetical protein 2133016 10483079 Alide2_2038 Alicycliphilus denitrificans K601 hypothetical protein YP_004387929.1 2132621 D 596154 CDS YP_004387930.1 330824627 10483080 2133020..2135047 1 NC_015422.1 KEGG: dia:Dtpsy_3191 hypothetical protein; hypothetical protein 2135047 10483080 Alide2_2039 Alicycliphilus denitrificans K601 hypothetical protein YP_004387930.1 2133020 D 596154 CDS YP_004387931.1 330824628 10483081 2135040..2135261 1 NC_015422.1 KEGG: dia:Dtpsy_3190 hypothetical protein; hypothetical protein 2135261 10483081 Alide2_2040 Alicycliphilus denitrificans K601 hypothetical protein YP_004387931.1 2135040 D 596154 CDS YP_004387932.1 330824629 10483082 2135328..2135633 1 NC_015422.1 KEGG: mms:mma_2786 hypothetical protein; hypothetical protein 2135633 10483082 Alide2_2041 Alicycliphilus denitrificans K601 hypothetical protein YP_004387932.1 2135328 D 596154 CDS YP_004387933.1 330824630 10483083 2135630..2135857 1 NC_015422.1 KEGG: nde:NIDE0123 hypothetical protein; hypothetical protein 2135857 10483083 Alide2_2042 Alicycliphilus denitrificans K601 hypothetical protein YP_004387933.1 2135630 D 596154 CDS YP_004387934.1 330824631 10483084 2135854..2136354 1 NC_015422.1 PFAM: Glycoside hydrolase, family 24; KEGG: sml:Smlt1851 putative glycosidase; glycoside hydrolase family protein 2136354 10483084 Alide2_2043 Alicycliphilus denitrificans K601 glycoside hydrolase family protein YP_004387934.1 2135854 D 596154 CDS YP_004387935.1 330824632 10483085 2136351..2136848 1 NC_015422.1 KEGG: nde:NIDE0125 hypothetical protein; hypothetical protein 2136848 10483085 Alide2_2044 Alicycliphilus denitrificans K601 hypothetical protein YP_004387935.1 2136351 D 596154 CDS YP_004387936.1 330824633 10483086 2136957..2137247 1 NC_015422.1 KEGG: rso:RSc3214 hypothetical protein; hypothetical protein 2137247 10483086 Alide2_2045 Alicycliphilus denitrificans K601 hypothetical protein YP_004387936.1 2136957 D 596154 CDS YP_004387937.1 330824634 10483087 complement(2137252..2138199) 1 NC_015422.1 PFAM: Protein of unknown function DUF511; KEGG: dno:DNO_0218 hypothetical protein; hypothetical protein 2138199 10483087 Alide2_2046 Alicycliphilus denitrificans K601 hypothetical protein YP_004387937.1 2137252 R 596154 CDS YP_004387938.1 330824635 10483088 complement(2138212..2138988) 1 NC_015422.1 KEGG: bav:BAV0365 hypothetical protein; hypothetical protein 2138988 10483088 Alide2_2047 Alicycliphilus denitrificans K601 hypothetical protein YP_004387938.1 2138212 R 596154 CDS YP_004387939.1 330824636 10483089 complement(2138993..2139532) 1 NC_015422.1 manually curated; KEGG: pol:Bpro_1539 hypothetical protein; hypothetical protein 2139532 10483089 Alide2_2048 Alicycliphilus denitrificans K601 hypothetical protein YP_004387939.1 2138993 R 596154 CDS YP_004387940.1 330824637 10483090 complement(2139540..2142611) 1 NC_015422.1 KEGG: xfm:Xfasm12_2267 type I restriction-modification system endonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; Restriction endonuclease, type I, EcoRI, R subunit/type III 2142611 10483090 Alide2_2049 Alicycliphilus denitrificans K601 Restriction endonuclease, type I, EcoRI, R subunit/type III YP_004387940.1 2139540 R 596154 CDS YP_004387941.1 330824638 10483091 complement(2142598..2144022) 1 NC_015422.1 KEGG: mca:MCA0277 hypothetical protein; hypothetical protein 2144022 10483091 Alide2_2050 Alicycliphilus denitrificans K601 hypothetical protein YP_004387941.1 2142598 R 596154 CDS YP_004387942.1 330824639 10483092 complement(2144022..2146406) 1 NC_015422.1 PFAM: DNA methylase, adenine-specific; KEGG: xfn:XfasM23_2177 N-6 DNA methylase; N-6 DNA methylase 2146406 10483092 Alide2_2051 Alicycliphilus denitrificans K601 N-6 DNA methylase YP_004387942.1 2144022 R 596154 CDS YP_004387943.1 330824640 10483093 complement(2146418..2148136) 1 NC_015422.1 PFAM: Domain of unknown function DUF262; Domain of unknown function DUF1524 RloF; KEGG: gca:Galf_1217 hypothetical protein; hypothetical protein 2148136 10483093 Alide2_2052 Alicycliphilus denitrificans K601 hypothetical protein YP_004387943.1 2146418 R 596154 CDS YP_004387944.1 330824641 10483094 complement(2148152..2149051) 1 NC_015422.1 KEGG: vei:Veis_2419 hypothetical protein; hypothetical protein 2149051 10483094 Alide2_2053 Alicycliphilus denitrificans K601 hypothetical protein YP_004387944.1 2148152 R 596154 CDS YP_004387945.1 330824642 10483095 2149260..2149664 1 NC_015422.1 PFAM: Glycoside hydrolase, family 24; KEGG: mms:mma_2788 phage-related lysozyme; glycoside hydrolase family protein 2149664 10483095 Alide2_2054 Alicycliphilus denitrificans K601 glycoside hydrolase family protein YP_004387945.1 2149260 D 596154 CDS YP_004387946.1 330824643 10483096 complement(2149746..2150900) 1 NC_015422.1 KEGG: mfa:Mfla_1158 DegP2 peptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; peptidase S1 and S6 chymotrypsin/Hap 2150900 10483096 Alide2_2055 Alicycliphilus denitrificans K601 peptidase S1 and S6 chymotrypsin/Hap YP_004387946.1 2149746 R 596154 CDS YP_004387947.1 330824644 10483097 complement(2150924..2151889) 1 NC_015422.1 PFAM: Peptidase M48; KEGG: mfa:Mfla_1159 peptidase M48, Ste24p; peptidase M48 Ste24p 2151889 10483097 Alide2_2056 Alicycliphilus denitrificans K601 peptidase M48 Ste24p YP_004387947.1 2150924 R 596154 CDS YP_004387948.1 330824645 10483098 complement(2151897..2152367) 1 NC_015422.1 KEGG: mfa:Mfla_1160 hypothetical protein; hypothetical protein 2152367 10483098 Alide2_2057 Alicycliphilus denitrificans K601 hypothetical protein YP_004387948.1 2151897 R 596154 CDS YP_004387949.1 330824646 10483099 complement(2152443..2152883) 1 NC_015422.1 TIGRFAM: Thioredoxin; KEGG: dde:Dde_3416 thioredoxin; PFAM: Thioredoxin domain; thioredoxin 2152883 10483099 Alide2_2058 Alicycliphilus denitrificans K601 thioredoxin YP_004387949.1 2152443 R 596154 CDS YP_004387950.1 330824647 10483100 complement(2152880..2154763) 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: dde:Dde_3415 FtsH-2 peptidase; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; ATP-dependent metalloprotease FtsH 2154763 10483100 Alide2_2059 Alicycliphilus denitrificans K601 ATP-dependent metalloprotease FtsH YP_004387950.1 2152880 R 596154 CDS YP_004387951.1 330824648 10483101 complement(2154791..2156221) 1 NC_015422.1 KEGG: rpf:Rpic12D_0625 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 2156221 10483101 Alide2_2060 Alicycliphilus denitrificans K601 phospholipase D/transphosphatidylase YP_004387951.1 2154791 R 596154 CDS YP_004387952.1 330824649 10483102 complement(2156239..2159088) 1 NC_015422.1 KEGG: mfa:Mfla_1170 ATPase AAA-2; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; ATPase AAA-2 domain-containing protein 2159088 10483102 Alide2_2061 Alicycliphilus denitrificans K601 ATPase AAA-2 domain-containing protein YP_004387952.1 2156239 R 596154 CDS YP_004387953.1 330824650 10483103 complement(2159182..2159751) 1 NC_015422.1 PFAM: Heat shock protein Hsp20; KEGG: rpf:Rpic12D_0629 heat shock protein HSP20; heat shock protein Hsp20 2159751 10483103 Alide2_2062 Alicycliphilus denitrificans K601 heat shock protein Hsp20 YP_004387953.1 2159182 R 596154 CDS YP_004387954.1 330824651 10483104 complement(2159784..2160065) 1 NC_015422.1 manually curated; TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: mfa:Mfla_1172 phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; excisionase family DNA binding domain-containing protein 2160065 10483104 Alide2_2063 Alicycliphilus denitrificans K601 excisionase family DNA binding domain-containing protein YP_004387954.1 2159784 R 596154 CDS YP_004387955.1 330824652 10483106 complement(2160805..2161476) 1 NC_015422.1 PFAM: Protein of unknown function DUF159; KEGG: tin:Tint_2914 protein of unknown function DUF159; hypothetical protein 2161476 10483106 Alide2_2065 Alicycliphilus denitrificans K601 hypothetical protein YP_004387955.1 2160805 R 596154 CDS YP_004387956.1 330824653 10483107 2161532..2162017 1 NC_015422.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: tin:Tint_2913 peptidase S24/S26A/S26B, conserved region; peptidase S24/S26A/S26B 2162017 10483107 Alide2_2066 Alicycliphilus denitrificans K601 peptidase S24/S26A/S26B YP_004387956.1 2161532 D 596154 CDS YP_004387957.1 330824654 10483108 2162017..2163303 1 NC_015422.1 KEGG: tin:Tint_2912 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; DNA-directed DNA polymerase 2163303 10483108 Alide2_2067 Alicycliphilus denitrificans K601 DNA-directed DNA polymerase YP_004387957.1 2162017 D 596154 CDS YP_004387958.1 330824655 10483109 complement(2163300..2163764) 1 NC_015422.1 KEGG: mca:MCA2632 hypothetical protein; hypothetical protein 2163764 10483109 Alide2_2068 Alicycliphilus denitrificans K601 hypothetical protein YP_004387958.1 2163300 R 596154 CDS YP_004387959.1 330824656 10483110 complement(2163761..2164147) 1 NC_015422.1 KEGG: mca:MCA2633 prophage LambdaMc01, site-specific recombinase resolvase family protein, truncation; site-specific recombinase resolvase family protein, truncation 2164147 10483110 Alide2_2069 Alicycliphilus denitrificans K601 site-specific recombinase resolvase family protein, truncation YP_004387959.1 2163761 R 596154 CDS YP_004387960.1 330824657 10483111 complement(2164144..2165523) 1 NC_015422.1 KEGG: mca:MCA2634 prophage LambdaMc01, site-specific recombinase resolvase family protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal; resolvase domain-containing protein 2165523 10483111 Alide2_2070 Alicycliphilus denitrificans K601 resolvase domain-containing protein YP_004387960.1 2164144 R 596154 CDS YP_004387961.1 330824658 10483112 complement(2165523..2165969) 1 NC_015422.1 PFAM: Protein of unknown function DUF2924; KEGG: mca:MCA2635 hypothetical protein; hypothetical protein 2165969 10483112 Alide2_2071 Alicycliphilus denitrificans K601 hypothetical protein YP_004387961.1 2165523 R 596154 CDS YP_004387962.1 330824659 10483113 complement(2165966..2166160) 1 NC_015422.1 KEGG: mca:MCA2636 hypothetical protein; hypothetical protein 2166160 10483113 Alide2_2072 Alicycliphilus denitrificans K601 hypothetical protein YP_004387962.1 2165966 R 596154 CDS YP_004387963.1 330824660 10483114 2166340..2166618 1 NC_015422.1 KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 2166618 10483114 Alide2_2073 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004387963.1 2166340 D 596154 CDS YP_004387964.1 330824661 10483115 2166619..2166882 1 NC_015422.1 KEGG: nde:NIDE0076 hypothetical protein; hypothetical protein 2166882 10483115 Alide2_2074 Alicycliphilus denitrificans K601 hypothetical protein YP_004387964.1 2166619 D 596154 CDS YP_004387965.1 330824662 10483117 2167055..2167378 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2167378 10483117 Alide2_2076 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004387965.1 2167055 D 596154 CDS YP_004387966.1 330824663 10483118 2167375..2168289 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 2168289 10483118 Alide2_2077 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004387966.1 2167375 D 596154 CDS YP_004387967.1 330824664 10483119 complement(2168352..2169278) 1 NC_015422.1 PFAM: Glutaminase; TIGRFAM: Glutaminase; HAMAP: Glutaminase; KEGG: atu:Atu1859 glutaminase; glutaminase 2169278 10483119 Alide2_2078 Alicycliphilus denitrificans K601 glutaminase YP_004387967.1 2168352 R 596154 CDS YP_004387968.1 330824665 10483120 complement(2169282..2170469) 1 NC_015422.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: pol:Bpro_4523 peptidase M20D, amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; amidohydrolase 2170469 10483120 Alide2_2079 Alicycliphilus denitrificans K601 amidohydrolase YP_004387968.1 2169282 R 596154 CDS YP_004387969.1 330824666 10483121 complement(2170507..2171847) 1 NC_015422.1 PFAM: General substrate transporter; KEGG: rme:Rmet_5758 major facilitator protein family permease; general substrate transporter 2171847 10483121 Alide2_2080 Alicycliphilus denitrificans K601 general substrate transporter YP_004387969.1 2170507 R 596154 CDS YP_004387970.1 330824667 10483122 2171974..2172876 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4525 LysR family transcriptional regulator; LysR family transcriptional regulator 2172876 10483122 Alide2_2081 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387970.1 2171974 D 596154 CDS YP_004387971.1 330824668 10483123 complement(2172945..2173742) 1 NC_015422.1 KEGG: sde:Sde_2785 hypothetical protein; hypothetical protein 2173742 10483123 Alide2_2082 Alicycliphilus denitrificans K601 hypothetical protein YP_004387971.1 2172945 R 596154 CDS YP_004387972.1 330824669 10483124 complement(2173877..2174371) 1 NC_015422.1 manually curated; KEGG: afr:AFE_1417 acetyltransferase, GNAT family; GNAT family acetyltransferase 2174371 10483124 Alide2_2083 Alicycliphilus denitrificans K601 GNAT family acetyltransferase YP_004387972.1 2173877 R 596154 CDS YP_004387973.1 330824670 10483125 complement(2174368..2174634) 1 NC_015422.1 PFAM: Protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein; hypothetical protein 2174634 10483125 Alide2_2084 Alicycliphilus denitrificans K601 hypothetical protein YP_004387973.1 2174368 R 596154 CDS YP_004387974.1 330824671 10483126 complement(2174865..2176121) 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1692 major facilitator superfamily transporter; major facilitator superfamily protein 2176121 10483126 Alide2_2085 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004387974.1 2174865 R 596154 CDS YP_004387975.1 330824672 10483127 2176305..2177096 1 NC_015422.1 KEGG: dia:Dtpsy_2008 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 2177096 10483127 Alide2_2086 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004387975.1 2176305 D 596154 CDS YP_004387976.1 330824673 10483128 2177160..2177585 1 NC_015422.1 KEGG: ajs:Ajs_1696 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein 2177585 10483128 Alide2_2087 Alicycliphilus denitrificans K601 phenylacetic acid degradation-like protein YP_004387976.1 2177160 D 596154 CDS YP_004387977.1 330824674 10483129 2177679..2178695 1 NC_015422.1 PFAM: Alcohol dehydrogenase, C-terminal; KEGG: ajs:Ajs_1697 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase; 2-alkenal reductase 2178695 10483129 Alide2_2088 Alicycliphilus denitrificans K601 2-alkenal reductase YP_004387977.1 2177679 D 596154 CDS YP_004387978.1 330824675 10483130 2178772..2179695 1 NC_015422.1 KEGG: ajs:Ajs_1699 putative glutathione S-transferase-related protein; glutathione S-transferase-like protein 2179695 10483130 Alide2_2089 Alicycliphilus denitrificans K601 glutathione S-transferase-like protein YP_004387978.1 2178772 D 596154 CDS YP_004387979.1 330824676 10483131 complement(2179775..2180368) 1 NC_015422.1 PFAM: Protein of unknown function DUF1566; KEGG: dia:Dtpsy_2002 protein of unknown function DUF1566; hypothetical protein 2180368 10483131 Alide2_2090 Alicycliphilus denitrificans K601 hypothetical protein YP_004387979.1 2179775 R 596154 CDS YP_004387980.1 330824677 10483132 2180857..2182260 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1703 major facilitator superfamily transporter; major facilitator superfamily protein 2182260 10483132 Alide2_2091 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004387980.1 2180857 D 596154 CDS YP_004387981.1 330824678 10483133 2182260..2183735 1 NC_015422.1 KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; deoxyribodipyrimidine photo-lyase 2183735 10483133 Alide2_2092 Alicycliphilus denitrificans K601 deoxyribodipyrimidine photo-lyase YP_004387981.1 2182260 D 596154 CDS YP_004387982.1 330824679 10483134 complement(2183740..2184300) 1 NC_015422.1 KEGG: ajs:Ajs_1629 hypothetical protein; hypothetical protein 2184300 10483134 Alide2_2093 Alicycliphilus denitrificans K601 hypothetical protein YP_004387982.1 2183740 R 596154 CDS YP_004387983.1 330824680 10483135 complement(2184281..2186641) 1 NC_015422.1 PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; TIGRFAM: Cobalamin-independent methionine synthase; HAMAP: Cobalamin-independent methionine synthase; KEGG: ajs:Ajs_1630 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2186641 10483135 Alide2_2094 Alicycliphilus denitrificans K601 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_004387983.1 2184281 R 596154 CDS YP_004387984.1 330824681 10483136 2186750..2187676 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_1631 LysR family transcriptional regulator; LysR family transcriptional regulator 2187676 10483136 Alide2_2095 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387984.1 2186750 D 596154 CDS YP_004387985.1 330824682 10483137 2187792..2187959 1 NC_015422.1 hypothetical protein 2187959 10483137 Alide2_2096 Alicycliphilus denitrificans K601 hypothetical protein YP_004387985.1 2187792 D 596154 CDS YP_004387986.1 330824683 10483139 2189638..2189964 1 NC_015422.1 KEGG: dac:Daci_3076 hypothetical protein; hypothetical protein 2189964 10483139 Alide2_2098 Alicycliphilus denitrificans K601 hypothetical protein YP_004387986.1 2189638 D 596154 CDS YP_004387987.1 330824684 10483140 complement(2189983..2190504) 1 NC_015422.1 PFAM: Protein of unknown function DUF3016; KEGG: dac:Daci_0667 hypothetical protein; hypothetical protein 2190504 10483140 Alide2_2099 Alicycliphilus denitrificans K601 hypothetical protein YP_004387987.1 2189983 R 596154 CDS YP_004387988.1 330824685 10483141 complement(2190611..2191471) 1 NC_015422.1 KEGG: dac:Daci_3579 PEP phosphonomutase; PFAM: Isocitrate lyase/phosphorylmutase; methylisocitrate lyase 2191471 10483141 Alide2_2100 Alicycliphilus denitrificans K601 methylisocitrate lyase YP_004387988.1 2190611 R 596154 CDS YP_004387989.1 330824686 10483142 complement(2191633..2192796) 1 NC_015422.1 KEGG: dac:Daci_3586 AcnD-accessory protein PrpF; TIGRFAM: PrpF, AcnD-accessory; PFAM: PrpF protein; AcnD-accessory protein PrpF 2192796 10483142 Alide2_2101 Alicycliphilus denitrificans K601 AcnD-accessory protein PrpF YP_004387989.1 2191633 R 596154 CDS YP_004387990.1 330824687 10483143 complement(2192824..2195427) 1 NC_015422.1 TIGRFAM: 2-methylisocitrate dehydratase AcnD, Fe/S-dependent; KEGG: dia:Dtpsy_2080 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; 2-methylisocitrate dehydratase 2195427 10483143 Alide2_2102 Alicycliphilus denitrificans K601 2-methylisocitrate dehydratase YP_004387990.1 2192824 R 596154 CDS YP_004387991.1 330824688 10483144 complement(2195447..2196607) 1 NC_015422.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; KEGG: ajs:Ajs_1635 methylcitrate synthase; PFAM: Citrate synthase-like; 2-methylcitrate synthase/citrate synthase II 2196607 10483144 Alide2_2103 Alicycliphilus denitrificans K601 2-methylcitrate synthase/citrate synthase II YP_004387991.1 2195447 R 596154 CDS YP_004387992.1 330824689 10483145 complement(2196604..2196999) 1 NC_015422.1 KEGG: dia:Dtpsy_2078 thioesterase superfamily protein; manually curated; PFAM: Thioesterase superfamily; thioesterase superfamily protein 2196999 10483145 Alide2_2104 Alicycliphilus denitrificans K601 thioesterase superfamily protein YP_004387992.1 2196604 R 596154 CDS YP_004387993.1 330824690 10483146 2197102..2198562 1 NC_015422.1 KEGG: ajs:Ajs_1637 XRE family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Helix-turn-helix type 3; Protein of unknown function DUF955; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator 2198562 10483146 Alide2_2105 Alicycliphilus denitrificans K601 XRE family transcriptional regulator YP_004387993.1 2197102 D 596154 CDS YP_004387994.1 330824691 10483147 complement(2198674..2199582) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: cti:RALTA_B2225 putative transcription regulator, LysR family; LysR family transcriptional regulator 2199582 10483147 Alide2_2106 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004387994.1 2198674 R 596154 CDS YP_004387995.1 330824692 10483148 2199712..2200095 1 NC_015422.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B2224 putative metallothiol transferase; Glyoxalase/bleomycin resistance protein/dioxygenase 2200095 10483148 Alide2_2107 Alicycliphilus denitrificans K601 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004387995.1 2199712 D 596154 CDS YP_004387996.1 330824693 10483149 2200145..2201212 1 NC_015422.1 KEGG: hse:Hsero_2301 hypothetical protein; hypothetical protein 2201212 10483149 Alide2_2108 Alicycliphilus denitrificans K601 hypothetical protein YP_004387996.1 2200145 D 596154 CDS YP_004387997.1 330824694 10483150 complement(2201219..2201665) 1 NC_015422.1 KEGG: ajs:Ajs_1639 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; RNA-binding S4 domain-containing protein 2201665 10483150 Alide2_2109 Alicycliphilus denitrificans K601 RNA-binding S4 domain-containing protein YP_004387997.1 2201219 R 596154 CDS YP_004387998.1 330824695 10483151 complement(2201688..2203091) 1 NC_015422.1 KEGG: dia:Dtpsy_2074 histidine kinase; PFAM: Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 2203091 10483151 Alide2_2110 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004387998.1 2201688 R 596154 CDS YP_004387999.1 330824696 10483152 complement(2203088..2203771) 1 NC_015422.1 KEGG: ajs:Ajs_1641 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 2203771 10483152 Alide2_2111 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004387999.1 2203088 R 596154 CDS YP_004388000.1 330824697 10483153 2203914..2204873 1 NC_015422.1 KEGG: dia:Dtpsy_2072 hypothetical protein; hypothetical protein 2204873 10483153 Alide2_2112 Alicycliphilus denitrificans K601 hypothetical protein YP_004388000.1 2203914 D 596154 CDS YP_004388001.1 330824698 10483154 2205010..2205564 1 NC_015422.1 KEGG: dia:Dtpsy_2071 hypothetical protein; hypothetical protein 2205564 10483154 Alide2_2113 Alicycliphilus denitrificans K601 hypothetical protein YP_004388001.1 2205010 D 596154 CDS YP_004388002.1 330824699 10483155 2205564..2207093 1 NC_015422.1 PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_1644 hypothetical protein; hypothetical protein 2207093 10483155 Alide2_2114 Alicycliphilus denitrificans K601 hypothetical protein YP_004388002.1 2205564 D 596154 CDS YP_004388003.1 330824700 10483156 2207159..2209348 1 NC_015422.1 KEGG: dia:Dtpsy_2060 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; PFAM: D-(-)-3-hydroxybutyrate oligomer hydrolase, putative; hydroxybutyrate-dimer hydrolase 2209348 10483156 Alide2_2115 Alicycliphilus denitrificans K601 hydroxybutyrate-dimer hydrolase YP_004388003.1 2207159 D 596154 CDS YP_004388004.1 330824701 10483157 complement(2209666..2210253) 1 NC_015422.1 KEGG: ctt:CtCNB1_3704 putative lipoprotein; hypothetical protein 2210253 10483157 Alide2_2116 Alicycliphilus denitrificans K601 hypothetical protein YP_004388004.1 2209666 R 596154 CDS YP_004388005.1 330824702 10483158 complement(2210438..2210605) 1 NC_015422.1 KEGG: dia:Dtpsy_2056 hypothetical protein; hypothetical protein 2210605 10483158 Alide2_2117 Alicycliphilus denitrificans K601 hypothetical protein YP_004388005.1 2210438 R 596154 CDS YP_004388006.1 330824703 10483159 complement(2210619..2211716) 1 NC_015422.1 PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: ajs:Ajs_1649 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 2211716 10483159 Alide2_2118 Alicycliphilus denitrificans K601 hypothetical protein YP_004388006.1 2210619 R 596154 CDS YP_004388007.1 330824704 10483160 complement(2211811..2212755) 1 NC_015422.1 KEGG: dia:Dtpsy_2054 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein 2212755 10483160 Alide2_2119 Alicycliphilus denitrificans K601 rhodanese-like protein YP_004388007.1 2211811 R 596154 CDS YP_004388008.1 330824705 10483161 complement(2212870..2213865) 1 NC_015422.1 TIGRFAM: Ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase; PFAM: Ferrochelatase; ferrochelatase 2213865 10483161 Alide2_2120 Alicycliphilus denitrificans K601 ferrochelatase YP_004388008.1 2212870 R 596154 CDS YP_004388009.1 330824706 10483162 2213884..2214609 1 NC_015422.1 KEGG: dac:Daci_2563 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase 2214609 10483162 Alide2_2121 Alicycliphilus denitrificans K601 HAD-superfamily hydrolase YP_004388009.1 2213884 D 596154 CDS YP_004388010.1 330824707 10483163 complement(2214581..2217337) 1 NC_015422.1 SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_2050 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; P-type (transporting) HAD superfamily ATPase 2217337 10483163 Alide2_2122 Alicycliphilus denitrificans K601 P-type (transporting) HAD superfamily ATPase YP_004388010.1 2214581 R 596154 CDS YP_004388011.1 330824708 10483164 complement(2217516..2218322) 1 NC_015422.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: ajs:Ajs_1655 alpha/beta hydrolase fold; alpha/beta fold family hydrolase 2218322 10483164 Alide2_2123 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004388011.1 2217516 R 596154 CDS YP_004388012.1 330824709 10483165 complement(2218322..2219623) 1 NC_015422.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: ajs:Ajs_1656 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; O-acetylhomoserine/O-acetylserine sulfhydrylase 2219623 10483165 Alide2_2124 Alicycliphilus denitrificans K601 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_004388012.1 2218322 R 596154 CDS YP_004388013.1 330824710 10483166 2219739..2220194 1 NC_015422.1 KEGG: dia:Dtpsy_2047 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; hypothetical protein 2220194 10483166 Alide2_2125 Alicycliphilus denitrificans K601 hypothetical protein YP_004388013.1 2219739 D 596154 CDS YP_004388014.1 330824711 10483167 2220288..2221382 1 NC_015422.1 TIGRFAM: Chorismate synthase; KEGG: dia:Dtpsy_2046 chorismate synthase; PFAM: Chorismate synthase; chorismate synthase 2221382 10483167 Alide2_2126 Alicycliphilus denitrificans K601 chorismate synthase YP_004388014.1 2220288 D 596154 CDS YP_004388015.1 330824712 10483168 complement(2221444..2221893) 1 NC_015422.1 KEGG: dia:Dtpsy_2045 transcriptional regulator NrdR; TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone; ribonucleotide reductase regulator NrdR-like protein 2221893 10483168 Alide2_2127 Alicycliphilus denitrificans K601 ribonucleotide reductase regulator NrdR-like protein YP_004388015.1 2221444 R 596154 CDS YP_004388016.1 330824713 10483169 complement(2221919..2223163) 1 NC_015422.1 KEGG: dia:Dtpsy_2044 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase; glycine hydroxymethyltransferase 2223163 10483169 Alide2_2128 Alicycliphilus denitrificans K601 glycine hydroxymethyltransferase YP_004388016.1 2221919 R 596154 CDS YP_004388017.1 330824714 10483170 complement(2223405..2224217) 1 NC_015422.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: dia:Dtpsy_2043 lytic transglycosylase catalytic; lytic transglycosylase catalytic subunit 2224217 10483170 Alide2_2129 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004388017.1 2223405 R 596154 CDS YP_004388018.1 330824715 10483171 2224935..2228693 1 NC_015422.1 PFAM: Protein of unknown function DUF748; Outer membrane protein, OmpA/MotB, C-terminal; KEGG: ajs:Ajs_1662 hypothetical protein; hypothetical protein 2228693 10483171 Alide2_2130 Alicycliphilus denitrificans K601 hypothetical protein YP_004388018.1 2224935 D 596154 CDS YP_004388019.1 330824716 10483172 2228917..2231514 1 NC_015422.1 PFAM: Protein of unknown function DUF349; KEGG: dia:Dtpsy_2041 hypothetical protein; hypothetical protein 2231514 10483172 Alide2_2131 Alicycliphilus denitrificans K601 hypothetical protein YP_004388019.1 2228917 D 596154 CDS YP_004388020.1 330824717 10483175 2231992..2234283 1 NC_015422.1 SMART: Ribonuclease II/R; Cold shock protein; RNA-binding domain, S1; manually curated; KEGG: dia:Dtpsy_1240 ribonuclease R; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, N-terminal OB domain; Ribosomal protein S1, RNA-binding domain; ribonuclease R 2234283 10483175 Alide2_2132 Alicycliphilus denitrificans K601 ribonuclease R YP_004388020.1 2231992 D 596154 CDS YP_004388021.1 330824718 10483176 2234306..2235061 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1241 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2235061 10483176 Alide2_2133 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004388021.1 2234306 D 596154 CDS YP_004388022.1 330824719 10483177 2235152..2235802 1 NC_015422.1 KEGG: aav:Aave_3388 cytochrome c553-like protein; cytochrome c553-like protein 2235802 10483177 Alide2_2134 Alicycliphilus denitrificans K601 cytochrome c553-like protein YP_004388022.1 2235152 D 596154 CDS YP_004388023.1 330824720 10483178 2235799..2237088 1 NC_015422.1 KEGG: aav:Aave_3387 cytochrome c, class I; PFAM: Cytochrome c, class I; gluconate 2-dehydrogenase 2237088 10483178 Alide2_2135 Alicycliphilus denitrificans K601 gluconate 2-dehydrogenase YP_004388023.1 2235799 D 596154 CDS YP_004388024.1 330824721 10483179 2237109..2237492 1 NC_015422.1 PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1244 hypothetical protein; thioredoxin domain-containing protein 2237492 10483179 Alide2_2136 Alicycliphilus denitrificans K601 thioredoxin domain-containing protein YP_004388024.1 2237109 D 596154 CDS YP_004388025.1 330824722 10483180 2237693..2238283 1 NC_015422.1 KEGG: dia:Dtpsy_1245 hypothetical protein; HAMAP: Ribosome maturation factor RimP; PFAM: Ribosome maturation factor RimP; ribosome maturation factor rimP 2238283 10483180 Alide2_2137 Alicycliphilus denitrificans K601 ribosome maturation factor rimP YP_004388025.1 2237693 D 596154 CDS YP_004388026.1 330824723 10483181 2238352..2239836 1 NC_015422.1 TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA-binding domain; KEGG: dia:Dtpsy_1246 NusA antitermination factor; SMART: RNA-binding domain, S1; K Homology; NusA antitermination factor 2239836 10483181 Alide2_2138 Alicycliphilus denitrificans K601 NusA antitermination factor YP_004388026.1 2238352 D 596154 CDS YP_004388027.1 330824724 10483182 2239861..2242692 1 NC_015422.1 KEGG: dia:Dtpsy_1247 translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; Translation initiation factor IF- 2, domain 3; translation initiation factor IF-2 2242692 10483182 Alide2_2139 Alicycliphilus denitrificans K601 translation initiation factor IF-2 YP_004388027.1 2239861 D 596154 CDS YP_004388028.1 330824725 10483183 2242696..2243076 1 NC_015422.1 KEGG: aav:Aave_3382 ribosome-binding factor A; TIGRFAM: Ribosome-binding factor A; PFAM: Ribosome-binding factor A; ribosome-binding factor A 2243076 10483183 Alide2_2140 Alicycliphilus denitrificans K601 ribosome-binding factor A YP_004388028.1 2242696 D 596154 CDS YP_004388029.1 330824726 10483184 2243069..2244073 1 NC_015422.1 TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: ajs:Ajs_2559 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II; tRNA pseudouridine synthase B 2244073 10483184 Alide2_2141 Alicycliphilus denitrificans K601 tRNA pseudouridine synthase B YP_004388029.1 2243069 D 596154 CDS YP_004388030.1 330824727 10483185 2244070..2245899 1 NC_015422.1 KEGG: ajs:Ajs_2558 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein TypA 2245899 10483185 Alide2_2142 Alicycliphilus denitrificans K601 GTP-binding protein TypA YP_004388030.1 2244070 D 596154 CDS YP_004388031.1 330824728 10483186 complement(2245967..2246845) 1 NC_015422.1 KEGG: vap:Vapar_3272 hypothetical protein; hypothetical protein 2246845 10483186 Alide2_2143 Alicycliphilus denitrificans K601 hypothetical protein YP_004388031.1 2245967 R 596154 CDS YP_004388032.1 330824729 10483187 2247179..2248270 1 NC_015422.1 KEGG: ajs:Ajs_2556 3-hydroxyisobutyryl-CoA hydrolase; PFAM: Crotonase, core; 3-hydroxyisobutyryl-CoA hydrolase 2248270 10483187 Alide2_2144 Alicycliphilus denitrificans K601 3-hydroxyisobutyryl-CoA hydrolase YP_004388032.1 2247179 D 596154 CDS YP_004388033.1 330824730 10483188 complement(2248221..2249063) 1 NC_015422.1 KEGG: ajs:Ajs_2555 putative transmembrane anti-sigma factor; transmembrane anti-sigma factor 2249063 10483188 Alide2_2145 Alicycliphilus denitrificans K601 transmembrane anti-sigma factor YP_004388033.1 2248221 R 596154 CDS YP_004388034.1 330824731 10483189 complement(2249088..2249612) 1 NC_015422.1 KEGG: dia:Dtpsy_1254 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 subunit 2249612 10483189 Alide2_2146 Alicycliphilus denitrificans K601 ECF subfamily RNA polymerase sigma-24 subunit YP_004388034.1 2249088 R 596154 CDS YP_004388035.1 330824732 10483190 complement(2249629..2249994) 1 NC_015422.1 KEGG: dia:Dtpsy_1255 secreted repeat of unknown function; hypothetical protein 2249994 10483190 Alide2_2147 Alicycliphilus denitrificans K601 hypothetical protein YP_004388035.1 2249629 R 596154 CDS YP_004388036.1 330824733 10483191 complement(2250094..2250567) 1 NC_015422.1 KEGG: dia:Dtpsy_1256 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SsrA-binding protein; SsrA-binding protein 2250567 10483191 Alide2_2148 Alicycliphilus denitrificans K601 SsrA-binding protein YP_004388036.1 2250094 R 596154 CDS YP_004388037.1 330824734 10483192 2250714..2251154 1 NC_015422.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: dia:Dtpsy_1257 cyclase/dehydrase; cyclase/dehydrase 2251154 10483192 Alide2_2149 Alicycliphilus denitrificans K601 cyclase/dehydrase YP_004388037.1 2250714 D 596154 CDS YP_004388038.1 330824735 10483193 2251164..2251490 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0125; KEGG: ajs:Ajs_2550 hypothetical protein; hypothetical protein 2251490 10483193 Alide2_2150 Alicycliphilus denitrificans K601 hypothetical protein YP_004388038.1 2251164 D 596154 CDS YP_004388039.1 330824736 10483194 complement(2251499..2252002) 1 NC_015422.1 KEGG: ajs:Ajs_2549 hypothetical protein; hypothetical protein 2252002 10483194 Alide2_2151 Alicycliphilus denitrificans K601 hypothetical protein YP_004388039.1 2251499 R 596154 CDS YP_004388040.1 330824737 10483195 2252096..2253571 1 NC_015422.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: dia:Dtpsy_1260 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; inosine-5'-monophosphate dehydrogenase 2253571 10483195 Alide2_2152 Alicycliphilus denitrificans K601 inosine-5'-monophosphate dehydrogenase YP_004388040.1 2252096 D 596154 CDS YP_004388041.1 330824738 10483196 2253645..2255261 1 NC_015422.1 TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; KEGG: dac:Daci_3013 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; NAD/GMP synthase; GMP synthase large subunit 2255261 10483196 Alide2_2153 Alicycliphilus denitrificans K601 GMP synthase large subunit YP_004388041.1 2253645 D 596154 CDS YP_004388042.1 330824739 10483197 2255650..2257176 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit 2257176 10483197 Alide2_2154 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004388042.1 2255650 D 596154 CDS YP_004388043.1 330824740 10483198 2257166..2257969 1 NC_015422.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 2257969 10483198 Alide2_2155 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004388043.1 2257166 D 596154 CDS YP_004388044.1 330824741 10483199 complement(2258020..2258808) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: bpt:Bpet1499 putative integrase/recombinase; integrase family protein 2258808 10483199 Alide2_2156 Alicycliphilus denitrificans K601 integrase family protein YP_004388044.1 2258020 R 596154 CDS YP_004388045.1 330824742 10483200 complement(2258805..2260064) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: bpt:Bpet1498 putative integrase/recombinase; integrase family protein 2260064 10483200 Alide2_2157 Alicycliphilus denitrificans K601 integrase family protein YP_004388045.1 2258805 R 596154 CDS YP_004388046.1 330824743 10483202 2260648..2260998 1 NC_015422.1 KEGG: bpt:Bpet2173 putative transposon; transposon protein 2260998 10483202 Alide2_2159 Alicycliphilus denitrificans K601 transposon protein YP_004388046.1 2260648 D 596154 CDS YP_004388047.1 330824744 10483203 2261747..2262577 1 NC_015422.1 PFAM: Protein of unknown function DUF932; KEGG: sml:Smlt1327 hypothetical protein; hypothetical protein 2262577 10483203 Alide2_2160 Alicycliphilus denitrificans K601 hypothetical protein YP_004388047.1 2261747 D 596154 CDS YP_004388048.1 330824745 10483204 2262658..2264724 1 NC_015422.1 KEGG: dia:Dtpsy_3534 ParB domain protein nuclease; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; ParB domain-containing protein nuclease 2264724 10483204 Alide2_2161 Alicycliphilus denitrificans K601 ParB domain-containing protein nuclease YP_004388048.1 2262658 D 596154 CDS YP_004388049.1 330824746 10483205 2264787..2264996 1 NC_015422.1 KEGG: dac:Daci_2732 hypothetical protein; hypothetical protein 2264996 10483205 Alide2_2162 Alicycliphilus denitrificans K601 hypothetical protein YP_004388049.1 2264787 D 596154 CDS YP_004388050.1 330824747 10483206 complement(2265201..2265428) 1 NC_015422.1 KEGG: rfr:Rfer_0855 hypothetical protein; hypothetical protein 2265428 10483206 Alide2_2163 Alicycliphilus denitrificans K601 hypothetical protein YP_004388050.1 2265201 R 596154 CDS YP_004388051.1 330824748 10483207 complement(2265425..2265703) 1 NC_015422.1 KEGG: psa:PST_3433 periplasmic transport protein; MerP; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport periplasmic protein 2265703 10483207 Alide2_2164 Alicycliphilus denitrificans K601 mercuric transport periplasmic protein YP_004388051.1 2265425 R 596154 CDS YP_004388052.1 330824749 10483208 complement(2265714..2266061) 1 NC_015422.1 PFAM: Mercuric transport protein MerT; KEGG: psa:PST_3432 mercuric transport protein; mercuric transport protein MerT 2266061 10483208 Alide2_2165 Alicycliphilus denitrificans K601 mercuric transport protein MerT YP_004388052.1 2265714 R 596154 CDS YP_004388053.1 330824750 10483209 2266135..2266530 1 NC_015422.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: rme:Rmet_5990 mercury resistance regulatory protein MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 2266530 10483209 Alide2_2166 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004388053.1 2266135 D 596154 CDS YP_004388054.1 330824751 10483210 complement(2266792..2267841) 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2217 protein of unknown function DUF6 transmembrane; hypothetical protein 2267841 10483210 Alide2_2167 Alicycliphilus denitrificans K601 hypothetical protein YP_004388054.1 2266792 R 596154 CDS YP_004388055.1 330824752 10483211 2267945..2268709 1 NC_015422.1 KEGG: pau:PA14_31180 hypothetical protein; hypothetical protein 2268709 10483211 Alide2_2168 Alicycliphilus denitrificans K601 hypothetical protein YP_004388055.1 2267945 D 596154 CDS YP_004388056.1 330824753 10483212 2268721..2269035 1 NC_015422.1 PFAM: Protein of unknown function DUF736; KEGG: dac:Daci_0462 hypothetical protein; hypothetical protein 2269035 10483212 Alide2_2169 Alicycliphilus denitrificans K601 hypothetical protein YP_004388056.1 2268721 D 596154 CDS YP_004388057.1 330824754 10483213 complement(2269191..2269484) 1 NC_015422.1 KEGG: bpr:GBP346_A0950 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 2269484 10483213 Alide2_2170 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004388057.1 2269191 R 596154 CDS YP_004388058.1 330824755 10483214 2269710..2270057 1 NC_015422.1 KEGG: rme:Rmet_1482 hypothetical protein; hypothetical protein 2270057 10483214 Alide2_2171 Alicycliphilus denitrificans K601 hypothetical protein YP_004388058.1 2269710 D 596154 CDS YP_004388059.1 330824756 10483215 2270314..2270637 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2270637 10483215 Alide2_2172 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004388059.1 2270314 D 596154 CDS YP_004388060.1 330824757 10483216 2270634..2271548 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 2271548 10483216 Alide2_2173 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004388060.1 2270634 D 596154 CDS YP_004388061.1 330824758 10483217 2271720..2272472 1 NC_015422.1 PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein; hypothetical protein 2272472 10483217 Alide2_2174 Alicycliphilus denitrificans K601 hypothetical protein YP_004388061.1 2271720 D 596154 CDS YP_004388062.1 330824759 10483218 2272556..2272837 1 NC_015422.1 KEGG: ajs:Ajs_2652 hypothetical protein; hypothetical protein 2272837 10483218 Alide2_2175 Alicycliphilus denitrificans K601 hypothetical protein YP_004388062.1 2272556 D 596154 CDS YP_004388063.1 330824760 10483219 2272852..2273697 1 NC_015422.1 PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein; replication initiator protein A 2273697 10483219 Alide2_2176 Alicycliphilus denitrificans K601 replication initiator protein A YP_004388063.1 2272852 D 596154 CDS YP_004388064.1 330824761 10483220 2273951..2274589 1 NC_015422.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 2274589 10483220 Alide2_2177 Alicycliphilus denitrificans K601 Cobyrinic acid ac-diamide synthase YP_004388064.1 2273951 D 596154 CDS YP_004388065.1 330824762 10483221 2274586..2274870 1 NC_015422.1 KEGG: bpt:Bpet2187 hypothetical protein; hypothetical protein 2274870 10483221 Alide2_2178 Alicycliphilus denitrificans K601 hypothetical protein YP_004388065.1 2274586 D 596154 CDS YP_004388066.1 330824763 10483222 2274867..2275412 1 NC_015422.1 KEGG: rme:Rmet_1257 hypothetical protein; hypothetical protein 2275412 10483222 Alide2_2179 Alicycliphilus denitrificans K601 hypothetical protein YP_004388066.1 2274867 D 596154 CDS YP_004388067.1 330824764 10483223 2275409..2275996 1 NC_015422.1 PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase; peptidase S26 2275996 10483223 Alide2_2180 Alicycliphilus denitrificans K601 peptidase S26 YP_004388067.1 2275409 D 596154 CDS YP_004388068.1 330824765 10483224 2276445..2278442 1 NC_015422.1 KEGG: pau:PA14_31070 hypothetical protein; hypothetical protein 2278442 10483224 Alide2_2181 Alicycliphilus denitrificans K601 hypothetical protein YP_004388068.1 2276445 D 596154 CDS YP_004388069.1 330824766 10483225 complement(2278637..2280316) 1 NC_015422.1 KEGG: net:Neut_0014 twin-arginine translocation pathway signal; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; bilirubin oxidase 2280316 10483225 Alide2_2182 Alicycliphilus denitrificans K601 bilirubin oxidase YP_004388069.1 2278637 R 596154 CDS YP_004388070.1 330824767 10483226 complement(2280491..2280604) 1 NC_015422.1 hypothetical protein 2280604 10483226 Alide2_2183 Alicycliphilus denitrificans K601 hypothetical protein YP_004388070.1 2280491 R 596154 CDS YP_004388071.1 330824768 10483227 complement(2280760..2281107) 1 NC_015422.1 KEGG: ajs:Ajs_2700 hypothetical protein; hypothetical protein 2281107 10483227 Alide2_2184 Alicycliphilus denitrificans K601 hypothetical protein YP_004388071.1 2280760 R 596154 CDS YP_004388072.1 330824769 10483228 complement(2281233..2282642) 1 NC_015422.1 TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_2202 heavy metal sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; heavy metal sensor signal transduction histidine kinase 2282642 10483228 Alide2_2185 Alicycliphilus denitrificans K601 heavy metal sensor signal transduction histidine kinase YP_004388072.1 2281233 R 596154 CDS YP_004388073.1 330824770 10483229 complement(2282643..2283326) 1 NC_015422.1 TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: ajs:Ajs_2725 two component heavy metal response transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; two component heavy metal response transcriptional regulator 2283326 10483229 Alide2_2186 Alicycliphilus denitrificans K601 two component heavy metal response transcriptional regulator YP_004388073.1 2282643 R 596154 CDS YP_004388074.1 330824771 10483230 2283451..2285271 1 NC_015422.1 KEGG: bmj:BMULJ_00903 copper resistance transmembrane protein; TIGRFAM: Copper-resistance protein CopA; Twin-arginine translocation pathway, signal sequence; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2; CopA family copper-resistance protein 2285271 10483230 Alide2_2187 Alicycliphilus denitrificans K601 CopA family copper-resistance protein YP_004388074.1 2283451 D 596154 CDS YP_004388075.1 330824772 10483231 2285478..2286476 1 NC_015422.1 KEGG: bmj:BMULJ_00902 copper resistance protein B; manually curated; PFAM: Copper resistance B precursor; copper resistance B 2286476 10483231 Alide2_2188 Alicycliphilus denitrificans K601 copper resistance B YP_004388075.1 2285478 D 596154 CDS YP_004388076.1 330824773 10483232 2286499..2287005 1 NC_015422.1 PFAM: Blue (type 1) copper domain; KEGG: net:Neut_0023 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein 2287005 10483232 Alide2_2189 Alicycliphilus denitrificans K601 blue (type 1) copper domain-containing protein YP_004388076.1 2286499 D 596154 CDS YP_004388077.1 330824774 10483233 2287060..2287401 1 NC_015422.1 KEGG: ajs:Ajs_2667 hypothetical protein; hypothetical protein 2287401 10483233 Alide2_2190 Alicycliphilus denitrificans K601 hypothetical protein YP_004388077.1 2287060 D 596154 CDS YP_004388078.1 330824775 10483234 2287476..2287955 1 NC_015422.1 KEGG: dia:Dtpsy_2195 hypothetical protein; hypothetical protein 2287955 10483234 Alide2_2191 Alicycliphilus denitrificans K601 hypothetical protein YP_004388078.1 2287476 D 596154 CDS YP_004388079.1 330824776 10483235 2287966..2288244 1 NC_015422.1 KEGG: dia:Dtpsy_2194 hypothetical protein; hypothetical protein 2288244 10483235 Alide2_2192 Alicycliphilus denitrificans K601 hypothetical protein YP_004388079.1 2287966 D 596154 CDS YP_004388080.1 330824777 10483236 2288249..2288890 1 NC_015422.1 KEGG: dia:Dtpsy_2193 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 2288890 10483236 Alide2_2193 Alicycliphilus denitrificans K601 isoprenylcysteine carboxyl methyltransferase YP_004388080.1 2288249 D 596154 CDS YP_004388081.1 330824778 10483237 2288947..2289045 1 NC_015422.1 hypothetical protein 2289045 10483237 Alide2_2194 Alicycliphilus denitrificans K601 hypothetical protein YP_004388081.1 2288947 D 596154 CDS YP_004388082.1 330824779 10483238 2289146..2289424 1 NC_015422.1 PFAM: Heavy metal transport/detoxification protein; KEGG: ajs:Ajs_1492 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2289424 10483238 Alide2_2195 Alicycliphilus denitrificans K601 heavy metal transport/detoxification protein YP_004388082.1 2289146 D 596154 CDS YP_004388083.1 330824780 10483239 2289434..2291098 1 NC_015422.1 KEGG: rpf:Rpic12D_5298 hypothetical protein; hypothetical protein 2291098 10483239 Alide2_2196 Alicycliphilus denitrificans K601 hypothetical protein YP_004388083.1 2289434 D 596154 CDS YP_004388084.1 330824781 10483240 2291107..2291610 1 NC_015422.1 PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2192 cytochrome c class I; cytochrome c class I 2291610 10483240 Alide2_2197 Alicycliphilus denitrificans K601 cytochrome c class I YP_004388084.1 2291107 D 596154 CDS YP_004388085.1 330824782 10483241 2291728..2294196 1 NC_015422.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2710 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 2294196 10483241 Alide2_2198 Alicycliphilus denitrificans K601 heavy metal translocating P-type ATPase YP_004388085.1 2291728 D 596154 CDS YP_004388086.1 330824783 10483242 2294193..2294432 1 NC_015422.1 KEGG: maq:Maqu_0130 hypothetical protein; hypothetical protein 2294432 10483242 Alide2_2199 Alicycliphilus denitrificans K601 hypothetical protein YP_004388086.1 2294193 D 596154 CDS YP_004388087.1 330824784 10483243 2294452..2294910 1 NC_015422.1 KEGG: axy:AXYL_01135 hypothetical protein; hypothetical protein 2294910 10483243 Alide2_2200 Alicycliphilus denitrificans K601 hypothetical protein YP_004388087.1 2294452 D 596154 CDS YP_004388088.1 330824785 10483244 2294986..2296302 1 NC_015422.1 KEGG: axy:AXYL_01137 heavy metal RND efflux outer membrane protein, CzcC family; heavy metal RND efflux outer membrane protein, CzcC family 2296302 10483244 Alide2_2201 Alicycliphilus denitrificans K601 heavy metal RND efflux outer membrane protein, CzcC family YP_004388088.1 2294986 D 596154 CDS YP_004388089.1 330824786 10483245 2296317..2297831 1 NC_015422.1 TIGRFAM: Secretion protein HlyD; KEGG: axy:AXYL_01138 RND family efflux transporter MFP subunit 3; RND family efflux transporter MFP subunit 2297831 10483245 Alide2_2202 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004388089.1 2296317 D 596154 CDS YP_004388090.1 330824787 10483246 2297828..2300947 1 NC_015422.1 KEGG: axy:AXYL_01139 cation efflux system protein CusA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 2300947 10483246 Alide2_2203 Alicycliphilus denitrificans K601 CzcA family heavy metal efflux pump YP_004388090.1 2297828 D 596154 CDS YP_004388091.1 330824788 10483248 complement(2301591..2302394) 1 NC_015422.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 2302394 10483248 Alide2_2205 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004388091.1 2301591 R 596154 CDS YP_004388092.1 330824789 10483249 complement(2302384..2303910) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit 2303910 10483249 Alide2_2206 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004388092.1 2302384 R 596154 CDS YP_004388093.1 330824790 10483251 2304823..2305845 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: bam:Bamb_2021 phage integrase family protein; integrase family protein 2305845 10483251 Alide2_2208 Alicycliphilus denitrificans K601 integrase family protein YP_004388093.1 2304823 D 596154 CDS YP_004388094.1 330824791 10483252 complement(2305814..2307109) 1 NC_015422.1 KEGG: dia:Dtpsy_2288 type II citrate synthase; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like; citrate synthase I 2307109 10483252 Alide2_2209 Alicycliphilus denitrificans K601 citrate synthase I YP_004388094.1 2305814 R 596154 CDS YP_004388095.1 330824792 10483253 complement(2307156..2307428) 1 NC_015422.1 PFAM: Protein of unknown function DUF339; KEGG: ajs:Ajs_2797 hypothetical protein; hypothetical protein 2307428 10483253 Alide2_2210 Alicycliphilus denitrificans K601 hypothetical protein YP_004388095.1 2307156 R 596154 CDS YP_004388096.1 330824793 10483254 complement(2307449..2308153) 1 NC_015422.1 TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; KEGG: dac:Daci_2424 succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: Ferredoxin; succinate dehydrogenase and fumarate reductase iron-sulfur protein 2308153 10483254 Alide2_2211 Alicycliphilus denitrificans K601 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004388096.1 2307449 R 596154 CDS YP_004388097.1 330824794 10483255 complement(2308182..2309987) 1 NC_015422.1 TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: dia:Dtpsy_2285 succinate dehydrogenase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; succinate dehydrogenase, flavoprotein subunit 2309987 10483255 Alide2_2212 Alicycliphilus denitrificans K601 succinate dehydrogenase, flavoprotein subunit YP_004388097.1 2308182 R 596154 CDS YP_004388098.1 330824795 10483256 complement(2310038..2310403) 1 NC_015422.1 KEGG: aav:Aave_2203 succinate dehydrogenase subunit D; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit; succinate dehydrogenase, hydrophobic membrane anchor protein 2310403 10483256 Alide2_2213 Alicycliphilus denitrificans K601 succinate dehydrogenase, hydrophobic membrane anchor protein YP_004388098.1 2310038 R 596154 CDS YP_004388099.1 330824796 10483257 complement(2310428..2310859) 1 NC_015422.1 KEGG: dia:Dtpsy_2283 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit; succinate dehydrogenase, cytochrome b556 subunit 2310859 10483257 Alide2_2214 Alicycliphilus denitrificans K601 succinate dehydrogenase, cytochrome b556 subunit YP_004388099.1 2310428 R 596154 CDS YP_004388100.1 330824797 10483258 complement(2311010..2311801) 1 NC_015422.1 KEGG: dia:Dtpsy_2282 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 2311801 10483258 Alide2_2215 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004388100.1 2311010 R 596154 CDS YP_004388101.1 330824798 10483259 2311984..2312970 1 NC_015422.1 KEGG: dia:Dtpsy_2281 malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD/NADP; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal; malate dehydrogenase 2312970 10483259 Alide2_2216 Alicycliphilus denitrificans K601 malate dehydrogenase YP_004388101.1 2311984 D 596154 CDS YP_004388102.1 330824799 10483260 2312983..2313774 1 NC_015422.1 KEGG: dac:Daci_2430 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 11; trans-aconitate 2-methyltransferase 2313774 10483260 Alide2_2217 Alicycliphilus denitrificans K601 trans-aconitate 2-methyltransferase YP_004388102.1 2312983 D 596154 CDS YP_004388103.1 330824800 10483261 2313982..2314626 1 NC_015422.1 KEGG: dia:Dtpsy_2278 hypothetical protein; hypothetical protein 2314626 10483261 Alide2_2218 Alicycliphilus denitrificans K601 hypothetical protein YP_004388103.1 2313982 D 596154 CDS YP_004388104.1 330824801 10483262 2314744..2317335 1 NC_015422.1 KEGG: ajs:Ajs_2787 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: Aconitase B, bacterial; PFAM: Aconitase B, N-terminal, bacterial; Aconitase B, HEAT-like, bacterial; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; aconitate hydratase 2 2317335 10483262 Alide2_2219 Alicycliphilus denitrificans K601 aconitate hydratase 2 YP_004388104.1 2314744 D 596154 CDS YP_004388105.1 330824802 10483264 complement(2317555..2318448) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_3364 transcriptional regulator, LysR family; LysR family transcriptional regulator 2318448 10483264 Alide2_2220 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388105.1 2317555 R 596154 CDS YP_004388106.1 330824803 10483265 2318555..2320261 1 NC_015422.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: ctt:CtCNB1_3363 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 2320261 10483265 Alide2_2221 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004388106.1 2318555 D 596154 CDS YP_004388107.1 330824804 10483266 2320368..2321360 1 NC_015422.1 KEGG: ctt:CtCNB1_3361 AccB; hypothetical protein 2321360 10483266 Alide2_2222 Alicycliphilus denitrificans K601 hypothetical protein YP_004388107.1 2320368 D 596154 CDS YP_004388108.1 330824805 10483267 2321367..2322527 1 NC_015422.1 KEGG: ctt:CtCNB1_3358 L-carnitine dehydratase/bile acid-inducible; PFAM: CoA-transferase family III; formyl-CoA transferase 2322527 10483267 Alide2_2223 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004388108.1 2321367 D 596154 CDS YP_004388109.1 330824806 10483268 complement(2322538..2323887) 1 NC_015422.1 TIGRFAM: Glutathione reductase, eukaryote/bacterial; KEGG: dac:Daci_2356 glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; glutathione-disulfide reductase 2323887 10483268 Alide2_2224 Alicycliphilus denitrificans K601 glutathione-disulfide reductase YP_004388109.1 2322538 R 596154 CDS YP_004388110.1 330824807 10483269 2324055..2324522 1 NC_015422.1 KEGG: vei:Veis_4544 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin; carbon-monoxide dehydrogenase 2324522 10483269 Alide2_2225 Alicycliphilus denitrificans K601 carbon-monoxide dehydrogenase YP_004388110.1 2324055 D 596154 CDS YP_004388111.1 330824808 10483270 2324556..2326928 1 NC_015422.1 KEGG: vap:Vapar_1594 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; carbon-monoxide dehydrogenase 2326928 10483270 Alide2_2226 Alicycliphilus denitrificans K601 carbon-monoxide dehydrogenase YP_004388111.1 2324556 D 596154 CDS YP_004388112.1 330824809 10483271 2326942..2327733 1 NC_015422.1 KEGG: pol:Bpro_0576 molybdopterin dehydrogenase, FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal; carbon-monoxide dehydrogenase 2327733 10483271 Alide2_2227 Alicycliphilus denitrificans K601 carbon-monoxide dehydrogenase YP_004388112.1 2326942 D 596154 CDS YP_004388113.1 330824810 10483272 2327863..2328777 1 NC_015422.1 KEGG: dac:Daci_2251 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core; ATPase 2328777 10483272 Alide2_2228 Alicycliphilus denitrificans K601 ATPase YP_004388113.1 2327863 D 596154 CDS YP_004388114.1 330824811 10483273 2328780..2330021 1 NC_015422.1 KEGG: vei:Veis_4536 VWA containing CoxE family protein; PFAM: vWA containing CoxE-like; SMART: von Willebrand factor, type A; VWA containing CoxE family protein 2330021 10483273 Alide2_2229 Alicycliphilus denitrificans K601 VWA containing CoxE family protein YP_004388114.1 2328780 D 596154 CDS YP_004388115.1 330824812 10483274 2330035..2330586 1 NC_015422.1 PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G 2330586 10483274 Alide2_2230 Alicycliphilus denitrificans K601 carbon monoxide dehydrogenase subunit G YP_004388115.1 2330035 D 596154 CDS YP_004388116.1 330824813 10483275 2330596..2331636 1 NC_015422.1 PFAM: XdhC- CoxI; KEGG: pol:Bpro_0572 hypothetical protein; XshC-Cox1 family protein 2331636 10483275 Alide2_2231 Alicycliphilus denitrificans K601 XshC-Cox1 family protein YP_004388116.1 2330596 D 596154 CDS YP_004388117.1 330824814 10483276 2331636..2332283 1 NC_015422.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 2332283 10483276 Alide2_2232 Alicycliphilus denitrificans K601 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004388117.1 2331636 D 596154 CDS YP_004388118.1 330824815 10483277 complement(2332291..2333166) 1 NC_015422.1 KEGG: dia:Dtpsy_2274 hypothetical protein; hypothetical protein 2333166 10483277 Alide2_2233 Alicycliphilus denitrificans K601 hypothetical protein YP_004388118.1 2332291 R 596154 CDS YP_004388119.1 330824816 10483278 complement(2333269..2335293) 1 NC_015422.1 KEGG: gox:GOX2135 hypothetical protein; hypothetical protein 2335293 10483278 Alide2_2234 Alicycliphilus denitrificans K601 hypothetical protein YP_004388119.1 2333269 R 596154 CDS YP_004388120.1 330824817 10483279 complement(2335308..2336639) 1 NC_015422.1 PFAM: Amine oxidase; KEGG: xal:XALc_2703 protoporphyrinogen oxidase protein; amine oxidase 2336639 10483279 Alide2_2235 Alicycliphilus denitrificans K601 amine oxidase YP_004388120.1 2335308 R 596154 CDS YP_004388121.1 330824818 10483280 complement(2336645..2337610) 1 NC_015422.1 KEGG: reh:H16_A2892 hypothetical protein; manually curated; PFAM: Lysylphosphatidylglycerol synthetase/UPF0104; Lysylphosphatidylglycerol synthetase 2337610 10483280 Alide2_2236 Alicycliphilus denitrificans K601 Lysylphosphatidylglycerol synthetase YP_004388121.1 2336645 R 596154 CDS YP_004388122.1 330824819 10483281 complement(2337607..2338620) 1 NC_015422.1 KEGG: cph:Cpha266_0350 glycosyl transferase family protein; manually curated; PFAM: Glycosyl transferase, family 2; family 2 glycosyl transferase 2338620 10483281 Alide2_2237 Alicycliphilus denitrificans K601 family 2 glycosyl transferase YP_004388122.1 2337607 R 596154 CDS YP_004388123.1 330824820 10483282 complement(2338719..2340092) 1 NC_015422.1 PFAM: Peptidase U32; KEGG: dia:Dtpsy_2273 peptidase U32; peptidase U32 2340092 10483282 Alide2_2238 Alicycliphilus denitrificans K601 peptidase U32 YP_004388123.1 2338719 R 596154 CDS YP_004388124.1 330824821 10483283 complement(2340141..2341511) 1 NC_015422.1 KEGG: dac:Daci_1894 hypothetical protein; hypothetical protein 2341511 10483283 Alide2_2239 Alicycliphilus denitrificans K601 hypothetical protein YP_004388124.1 2340141 R 596154 CDS YP_004388125.1 330824822 10483284 complement(2341539..2342420) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2444 LysR family transcriptional regulator; LysR family transcriptional regulator 2342420 10483284 Alide2_2240 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388125.1 2341539 R 596154 CDS YP_004388126.1 330824823 10483286 complement(2343034..2344389) 1 NC_015422.1 PFAM: Transposase, IS4-like; KEGG: pna:Pnap_4647 transposase, IS4 family protein; transposase IS4 family protein 2344389 10483286 Alide2_2242 Alicycliphilus denitrificans K601 transposase IS4 family protein YP_004388126.1 2343034 R 596154 CDS YP_004388127.1 330824824 10483287 complement(2344806..2345339) 1 NC_015422.1 KEGG: dia:Dtpsy_2271 two component transcriptional regulator, fis family; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; two component Fis family transcriptional regulator 2345339 10483287 Alide2_2243 Alicycliphilus denitrificans K601 two component Fis family transcriptional regulator YP_004388127.1 2344806 R 596154 CDS YP_004388128.1 330824825 10483288 complement(2345340..2346656) 1 NC_015422.1 KEGG: ajs:Ajs_2780 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 2346656 10483288 Alide2_2244 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004388128.1 2345340 R 596154 CDS YP_004388129.1 330824826 10483289 complement(2346653..2347462) 1 NC_015422.1 PFAM: Surfeit locus 1; KEGG: ajs:Ajs_2779 surfeit locus 1 family protein; surfeit locus 1 family protein 2347462 10483289 Alide2_2245 Alicycliphilus denitrificans K601 surfeit locus 1 family protein YP_004388129.1 2346653 R 596154 CDS YP_004388130.1 330824827 10483290 complement(2347459..2347833) 1 NC_015422.1 KEGG: ajs:Ajs_2778 cytochrome c oxidase subunit IV; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic; cytochrome o ubiquinol oxidase subunit IV 2347833 10483290 Alide2_2246 Alicycliphilus denitrificans K601 cytochrome o ubiquinol oxidase subunit IV YP_004388130.1 2347459 R 596154 CDS YP_004388131.1 330824828 10483291 complement(2347834..2348466) 1 NC_015422.1 KEGG: dia:Dtpsy_2267 cytochrome o ubiquinol oxidase, subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III; cytochrome o ubiquinol oxidase subunit III 2348466 10483291 Alide2_2247 Alicycliphilus denitrificans K601 cytochrome o ubiquinol oxidase subunit III YP_004388131.1 2347834 R 596154 CDS YP_004388132.1 330824829 10483292 complement(2348459..2350465) 1 NC_015422.1 TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; KEGG: ajs:Ajs_2776 cytochrome-c oxidase; PFAM: Cytochrome c oxidase, subunit I; cytochrome o ubiquinol oxidase subunit I 2350465 10483292 Alide2_2248 Alicycliphilus denitrificans K601 cytochrome o ubiquinol oxidase subunit I YP_004388132.1 2348459 R 596154 CDS YP_004388133.1 330824830 10483293 complement(2350490..2351479) 1 NC_015422.1 KEGG: ajs:Ajs_2775 ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal; ubiquinol oxidase subunit II 2351479 10483293 Alide2_2249 Alicycliphilus denitrificans K601 ubiquinol oxidase subunit II YP_004388133.1 2350490 R 596154 CDS YP_004388134.1 330824831 10483294 2351781..2353112 1 NC_015422.1 PFAM: General substrate transporter; KEGG: ajs:Ajs_2774 general substrate transporter; general substrate transporter 2353112 10483294 Alide2_2250 Alicycliphilus denitrificans K601 general substrate transporter YP_004388134.1 2351781 D 596154 CDS YP_004388135.1 330824832 10483295 complement(2353221..2354183) 1 NC_015422.1 KEGG: dia:Dtpsy_2263 protein TolA; TIGRFAM: Tol-Pal system, TolA; TonB, C-terminal; PFAM: Tol-Pal system, TolA; protein TolA 2354183 10483295 Alide2_2251 Alicycliphilus denitrificans K601 protein TolA YP_004388135.1 2353221 R 596154 CDS YP_004388136.1 330824833 10483296 complement(2354205..2354630) 1 NC_015422.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2772 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2354630 10483296 Alide2_2252 Alicycliphilus denitrificans K601 biopolymer transport protein ExbD/TolR YP_004388136.1 2354205 R 596154 CDS YP_004388137.1 330824834 10483297 complement(2354644..2355345) 1 NC_015422.1 KEGG: dia:Dtpsy_2261 protein TolQ; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein TolQ 2355345 10483297 Alide2_2253 Alicycliphilus denitrificans K601 protein TolQ YP_004388137.1 2354644 R 596154 CDS YP_004388138.1 330824835 10483298 complement(2355342..2355764) 1 NC_015422.1 KEGG: dia:Dtpsy_2260 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; tol-pal system-associated acyl-CoA thioesterase 2355764 10483298 Alide2_2254 Alicycliphilus denitrificans K601 tol-pal system-associated acyl-CoA thioesterase YP_004388138.1 2355342 R 596154 CDS YP_004388139.1 330824836 10483299 complement(2355767..2356951) 1 NC_015422.1 KEGG: dia:Dtpsy_2259 aminotransferase; PFAM: Aminotransferase, class I/classII; aspartate transaminase 2356951 10483299 Alide2_2255 Alicycliphilus denitrificans K601 aspartate transaminase YP_004388139.1 2355767 R 596154 CDS YP_004388140.1 330824837 10483300 complement(2357023..2357568) 1 NC_015422.1 TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: dia:Dtpsy_2258 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; NusB antitermination factor 2357568 10483300 Alide2_2256 Alicycliphilus denitrificans K601 NusB antitermination factor YP_004388140.1 2357023 R 596154 CDS YP_004388141.1 330824838 10483301 complement(2357565..2358029) 1 NC_015422.1 KEGG: ajs:Ajs_2767 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 2358029 10483301 Alide2_2257 Alicycliphilus denitrificans K601 6,7-dimethyl-8-ribityllumazine synthase YP_004388141.1 2357565 R 596154 CDS YP_004388142.1 330824839 10483302 complement(2358033..2359154) 1 NC_015422.1 KEGG: dia:Dtpsy_2256 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2359154 10483302 Alide2_2258 Alicycliphilus denitrificans K601 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_004388142.1 2358033 R 596154 CDS YP_004388143.1 330824840 10483303 complement(2359292..2359579) 1 NC_015422.1 PFAM: Ferredoxin; KEGG: dia:Dtpsy_2255 ferredoxin; ferredoxin 2359579 10483303 Alide2_2259 Alicycliphilus denitrificans K601 ferredoxin YP_004388143.1 2359292 R 596154 CDS YP_004388144.1 330824841 10483304 complement(2359937..2360818) 1 NC_015422.1 PFAM: NUDIX hydrolase domain; KEGG: pna:Pnap_2699 NUDIX hydrolase; NUDIX hydrolase 2360818 10483304 Alide2_2260 Alicycliphilus denitrificans K601 NUDIX hydrolase YP_004388144.1 2359937 R 596154 CDS YP_004388145.1 330824842 10483305 2360949..2361857 1 NC_015422.1 KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxyacyl-CoA dehydrogenase 2361857 10483305 Alide2_2261 Alicycliphilus denitrificans K601 3-hydroxyacyl-CoA dehydrogenase YP_004388145.1 2360949 D 596154 CDS YP_004388146.1 330824843 10483306 2361965..2363497 1 NC_015422.1 TIGRFAM: Glutamate--cysteine ligase, monofunctional; KEGG: dia:Dtpsy_1339 glutamate/cysteine ligase; PFAM: Glutamate--cysteine ligase; glutamate/cysteine ligase 2363497 10483306 Alide2_2262 Alicycliphilus denitrificans K601 glutamate/cysteine ligase YP_004388146.1 2361965 D 596154 CDS YP_004388147.1 330824844 10483307 2363540..2365723 1 NC_015422.1 KEGG: vap:Vapar_3567 protein of unknown function DUF893 YccS/YhfK; hypothetical protein 2365723 10483307 Alide2_2263 Alicycliphilus denitrificans K601 hypothetical protein YP_004388147.1 2363540 D 596154 CDS YP_004388148.1 330824845 10483308 complement(2365720..2365932) 1 NC_015422.1 KEGG: aav:Aave_2269 hypothetical protein; hypothetical protein 2365932 10483308 Alide2_2264 Alicycliphilus denitrificans K601 hypothetical protein YP_004388148.1 2365720 R 596154 CDS YP_004388149.1 330824846 10483309 complement(2366030..2366395) 1 NC_015422.1 PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_4413 endoribonuclease L-PSP; endoribonuclease L-PSP 2366395 10483309 Alide2_2265 Alicycliphilus denitrificans K601 endoribonuclease L-PSP YP_004388149.1 2366030 R 596154 CDS YP_004388150.1 330824847 10483310 complement(2366430..2367818) 1 NC_015422.1 PFAM: BFD-like [2Fe-2S]-binding domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_4414 BFD-like (2Fe-2S)-binding region; BFD (2Fe-2S)-binding domain-containing protein 2367818 10483310 Alide2_2266 Alicycliphilus denitrificans K601 BFD (2Fe-2S)-binding domain-containing protein YP_004388150.1 2366430 R 596154 CDS YP_004388151.1 330824848 10483311 complement(2367820..2368164) 1 NC_015422.1 KEGG: pol:Bpro_4415 hypothetical protein; hypothetical protein 2368164 10483311 Alide2_2267 Alicycliphilus denitrificans K601 hypothetical protein YP_004388151.1 2367820 R 596154 CDS YP_004388152.1 330824849 10483312 complement(2368154..2369290) 1 NC_015422.1 KEGG: pol:Bpro_4416 FAD dependent oxidoreductase; manually curated; PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2369290 10483312 Alide2_2268 Alicycliphilus denitrificans K601 FAD dependent oxidoreductase YP_004388152.1 2368154 R 596154 CDS YP_004388153.1 330824850 10483313 complement(2369335..2370318) 1 NC_015422.1 KEGG: dac:Daci_0779 hypothetical protein; hypothetical protein 2370318 10483313 Alide2_2269 Alicycliphilus denitrificans K601 hypothetical protein YP_004388153.1 2369335 R 596154 CDS YP_004388154.1 330824851 10483314 complement(2370393..2371316) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4347 LysR family transcriptional regulator; LysR family transcriptional regulator 2371316 10483314 Alide2_2270 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388154.1 2370393 R 596154 CDS YP_004388155.1 330824852 10483315 2371489..2372448 1 NC_015422.1 KEGG: ajs:Ajs_2510 GTP-binding protein, HSR1-related; TIGRFAM: GTP-binding protein, ribosome biogenesis, YlqF; PFAM: GTP-binding protein, HSR1-related; ribosome biogenesis GTP-binding protein YlqF 2372448 10483315 Alide2_2271 Alicycliphilus denitrificans K601 ribosome biogenesis GTP-binding protein YlqF YP_004388155.1 2371489 D 596154 CDS YP_004388156.1 330824853 10483316 complement(2372530..2374359) 1 NC_015422.1 KEGG: dia:Dtpsy_1352 hypothetical protein; hypothetical protein 2374359 10483316 Alide2_2272 Alicycliphilus denitrificans K601 hypothetical protein YP_004388156.1 2372530 R 596154 CDS YP_004388157.1 330824854 10483317 complement(2374406..2375176) 1 NC_015422.1 KEGG: dia:Dtpsy_1355 pseudouridine synthase; manually curated; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; pseudouridine synthase 2375176 10483317 Alide2_2273 Alicycliphilus denitrificans K601 pseudouridine synthase YP_004388157.1 2374406 R 596154 CDS YP_004388158.1 330824855 10483318 complement(2375173..2375466) 1 NC_015422.1 KEGG: dia:Dtpsy_1356 hypothetical protein; hypothetical protein 2375466 10483318 Alide2_2274 Alicycliphilus denitrificans K601 hypothetical protein YP_004388158.1 2375173 R 596154 CDS YP_004388159.1 330824856 10483319 2375570..2376496 1 NC_015422.1 PFAM: Phosphoesterase, DHHA1; KEGG: ajs:Ajs_2502 phosphoesterase, DHHA1; phosphoesterase DHHA1 2376496 10483319 Alide2_2275 Alicycliphilus denitrificans K601 phosphoesterase DHHA1 YP_004388159.1 2375570 D 596154 CDS YP_004388160.1 330824857 10483320 complement(2376547..2377782) 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: aav:Aave_2285 major facilitator superfamily transporter; major facilitator superfamily protein 2377782 10483320 Alide2_2276 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004388160.1 2376547 R 596154 CDS YP_004388161.1 330824858 10483321 complement(2377824..2378249) 1 NC_015422.1 KEGG: ajs:Ajs_2501 nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like); nuclease 2378249 10483321 Alide2_2277 Alicycliphilus denitrificans K601 nuclease YP_004388161.1 2377824 R 596154 CDS YP_004388162.1 330824859 10483322 2378348..2379223 1 NC_015422.1 TIGRFAM: RarD protein; KEGG: dia:Dtpsy_1360 RarD protein, DMT superfamily transporter; RarD protein, DMT superfamily transporter 2379223 10483322 Alide2_2278 Alicycliphilus denitrificans K601 RarD protein, DMT superfamily transporter YP_004388162.1 2378348 D 596154 CDS YP_004388163.1 330824860 10483323 complement(2379257..2379823) 1 NC_015422.1 KEGG: dia:Dtpsy_1363 pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; pseudouridine synthase Rsu 2379823 10483323 Alide2_2279 Alicycliphilus denitrificans K601 pseudouridine synthase Rsu YP_004388163.1 2379257 R 596154 CDS YP_004388164.1 330824861 10483324 complement(2379820..2380650) 1 NC_015422.1 PFAM: Peptidase M23; KEGG: ajs:Ajs_2496 peptidase M23B; peptidase M23 2380650 10483324 Alide2_2280 Alicycliphilus denitrificans K601 peptidase M23 YP_004388164.1 2379820 R 596154 CDS YP_004388165.1 330824862 10483325 2380923..2382326 1 NC_015422.1 KEGG: dia:Dtpsy_1365 fumarate lyase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; aspartate ammonia-lyase 2382326 10483325 Alide2_2281 Alicycliphilus denitrificans K601 aspartate ammonia-lyase YP_004388165.1 2380923 D 596154 CDS YP_004388166.1 330824863 10483326 complement(2382399..2383205) 1 NC_015422.1 PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: dac:Daci_2483 hypothetical protein; hypothetical protein 2383205 10483326 Alide2_2282 Alicycliphilus denitrificans K601 hypothetical protein YP_004388166.1 2382399 R 596154 CDS YP_004388167.1 330824864 10483327 complement(2383271..2383810) 1 NC_015422.1 PFAM: Protein of unknown function DUF924; KEGG: hel:HELO_3084 protein of unknown function DUF924; hypothetical protein 2383810 10483327 Alide2_2283 Alicycliphilus denitrificans K601 hypothetical protein YP_004388167.1 2383271 R 596154 CDS YP_004388168.1 330824865 10483328 complement(2383828..2385639) 1 NC_015422.1 TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; KEGG: ajs:Ajs_1608 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; glutaminyl-tRNA synthetase 2385639 10483328 Alide2_2284 Alicycliphilus denitrificans K601 glutaminyl-tRNA synthetase YP_004388168.1 2383828 R 596154 CDS YP_004388169.1 330824866 10483329 2385779..2386117 1 NC_015422.1 KEGG: dia:Dtpsy_2105 hypothetical protein; hypothetical protein 2386117 10483329 Alide2_2285 Alicycliphilus denitrificans K601 hypothetical protein YP_004388169.1 2385779 D 596154 CDS YP_004388170.1 330824867 10483330 2386226..2386675 1 NC_015422.1 TIGRFAM: Dehydroquinase, class II; KEGG: ajs:Ajs_1610 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II; 3-dehydroquinate dehydratase 2386675 10483330 Alide2_2286 Alicycliphilus denitrificans K601 3-dehydroquinate dehydratase YP_004388170.1 2386226 D 596154 CDS YP_004388171.1 330824868 10483331 2386669..2387562 1 NC_015422.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_2103 alpha/beta hydrolase fold protein; alpha/beta fold family hydrolase 2387562 10483331 Alide2_2287 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004388171.1 2386669 D 596154 CDS YP_004388172.1 330824869 10483332 2387559..2387984 1 NC_015422.1 PFAM: Peptide chain release factor class I/class II; KEGG: dia:Dtpsy_2102 class I peptide chain release factor; class I peptide chain release factor 2387984 10483332 Alide2_2288 Alicycliphilus denitrificans K601 class I peptide chain release factor YP_004388172.1 2387559 D 596154 CDS YP_004388173.1 330824870 10483333 2388086..2388922 1 NC_015422.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B; extradiol ring-cleavage dioxygenase class III protein subunit B 2388922 10483333 Alide2_2289 Alicycliphilus denitrificans K601 extradiol ring-cleavage dioxygenase class III protein subunit B YP_004388173.1 2388086 D 596154 CDS YP_004388174.1 330824871 10483334 2388919..2389614 1 NC_015422.1 PFAM: Phospholipase/carboxylesterase; KEGG: vei:Veis_2297 phospholipase/carboxylesterase; phospholipase/carboxylesterase 2389614 10483334 Alide2_2290 Alicycliphilus denitrificans K601 phospholipase/carboxylesterase YP_004388174.1 2388919 D 596154 CDS YP_004388175.1 330824872 10483335 2389795..2390673 1 NC_015422.1 KEGG: ajs:Ajs_1615 hypothetical protein; hypothetical protein 2390673 10483335 Alide2_2291 Alicycliphilus denitrificans K601 hypothetical protein YP_004388175.1 2389795 D 596154 CDS YP_004388176.1 330824873 10483336 complement(2390692..2391162) 1 NC_015422.1 KEGG: ajs:Ajs_1616 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator 2391162 10483336 Alide2_2292 Alicycliphilus denitrificans K601 AsnC family transcriptional regulator YP_004388176.1 2390692 R 596154 CDS YP_004388177.1 330824874 10483337 2391266..2393893 1 NC_015422.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; Alpha-ketoglutarate dehydrogenase; KEGG: ajs:Ajs_1617 2-oxoacid dehydrogenase subunit E1; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; 2-oxo-acid dehydrogenase E1 subunit 2393893 10483337 Alide2_2293 Alicycliphilus denitrificans K601 2-oxo-acid dehydrogenase E1 subunit YP_004388177.1 2391266 D 596154 CDS YP_004388178.1 330824875 10483338 complement(2393910..2395193) 1 NC_015422.1 PFAM: Amidase; KEGG: bpt:Bpet0082 putative amidase; amidase 2395193 10483338 Alide2_2294 Alicycliphilus denitrificans K601 amidase YP_004388178.1 2393910 R 596154 CDS YP_004388179.1 330824876 10483339 complement(2395202..2396194) 1 NC_015422.1 KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein 2396194 10483339 Alide2_2295 Alicycliphilus denitrificans K601 hypothetical protein YP_004388179.1 2395202 R 596154 CDS YP_004388180.1 330824877 10483340 2396305..2397222 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hmg:100212933 similar to lysR transcriptional regulator; LysR family transcriptional regulator 2397222 10483340 Alide2_2296 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388180.1 2396305 D 596154 CDS YP_004388181.1 330824878 10483341 2397257..2398036 1 NC_015422.1 KEGG: vap:Vapar_5148 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 2398036 10483341 Alide2_2297 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004388181.1 2397257 D 596154 CDS YP_004388182.1 330824879 10483342 2398189..2399511 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_5147 major facilitator superfamily MFS_1; major facilitator superfamily protein 2399511 10483342 Alide2_2298 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004388182.1 2398189 D 596154 CDS YP_004388183.1 330824880 10483343 2399523..2400413 1 NC_015422.1 KEGG: vap:Vapar_5146 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 2400413 10483343 Alide2_2299 Alicycliphilus denitrificans K601 3-hydroxyisobutyrate dehydrogenase YP_004388183.1 2399523 D 596154 CDS YP_004388184.1 330824881 10483344 2400484..2401497 1 NC_015422.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_5145 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2401497 10483344 Alide2_2300 Alicycliphilus denitrificans K601 NAD-dependent epimerase/dehydratase YP_004388184.1 2400484 D 596154 CDS YP_004388185.1 330824882 10483345 2401501..2402763 1 NC_015422.1 PFAM: Protein of unknown function, DUF1537; KEGG: vap:Vapar_5144 type III effector Hrp-dependent outers; type III effector Hrp-dependent outer protein 2402763 10483345 Alide2_2301 Alicycliphilus denitrificans K601 type III effector Hrp-dependent outer protein YP_004388185.1 2401501 D 596154 CDS YP_004388186.1 330824883 10483346 2402760..2403425 1 NC_015422.1 PFAM: Class II aldolase/adducin, N-terminal; KEGG: vap:Vapar_5143 putative aldolase; class II aldolase/adducin family protein 2403425 10483346 Alide2_2302 Alicycliphilus denitrificans K601 class II aldolase/adducin family protein YP_004388186.1 2402760 D 596154 CDS YP_004388187.1 330824884 10483347 2403435..2404244 1 NC_015422.1 KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain; hydroxypyruvate isomerase 2404244 10483347 Alide2_2303 Alicycliphilus denitrificans K601 hydroxypyruvate isomerase YP_004388187.1 2403435 D 596154 CDS YP_004388188.1 330824885 10483348 complement(2404286..2405119) 1 NC_015422.1 PFAM: Protein of unknown function DUF980; KEGG: ajs:Ajs_1618 hypothetical protein; hypothetical protein 2405119 10483348 Alide2_2304 Alicycliphilus denitrificans K601 hypothetical protein YP_004388188.1 2404286 R 596154 CDS YP_004388189.1 330824886 10483349 complement(2405124..2405906) 1 NC_015422.1 PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_2095 UDP-2,3-diacylglucosamine hydrolase; metallophosphoesterase 2405906 10483349 Alide2_2305 Alicycliphilus denitrificans K601 metallophosphoesterase YP_004388189.1 2405124 R 596154 CDS YP_004388190.1 330824887 10483350 complement(2405911..2406438) 1 NC_015422.1 KEGG: dia:Dtpsy_2094 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; peptidyl-prolyl isomerase 2406438 10483350 Alide2_2306 Alicycliphilus denitrificans K601 peptidyl-prolyl isomerase YP_004388190.1 2405911 R 596154 CDS YP_004388191.1 330824888 10483351 complement(2406460..2407047) 1 NC_015422.1 KEGG: dia:Dtpsy_2093 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; peptidyl-prolyl isomerase 2407047 10483351 Alide2_2307 Alicycliphilus denitrificans K601 peptidyl-prolyl isomerase YP_004388191.1 2406460 R 596154 CDS YP_004388192.1 330824889 10483352 complement(2407044..2408414) 1 NC_015422.1 PFAM: YkuD domain; KEGG: aav:Aave_2318 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 2408414 10483352 Alide2_2308 Alicycliphilus denitrificans K601 ErfK/YbiS/YcfS/YnhG family protein YP_004388192.1 2407044 R 596154 CDS YP_004388193.1 330824890 10483353 complement(2408493..2409563) 1 NC_015422.1 PFAM: Tetratricopeptide TPR-1; KEGG: aav:Aave_2319 TPR repeat-containing protein; hypothetical protein 2409563 10483353 Alide2_2309 Alicycliphilus denitrificans K601 hypothetical protein YP_004388193.1 2408493 R 596154 CDS YP_004388194.1 330824891 10483354 2409787..2411163 1 NC_015422.1 SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: ajs:Ajs_1623 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR; cysteinyl-tRNA synthetase 2411163 10483354 Alide2_2310 Alicycliphilus denitrificans K601 cysteinyl-tRNA synthetase YP_004388194.1 2409787 D 596154 CDS YP_004388195.1 330824892 10483355 2411209..2411856 1 NC_015422.1 SMART: HhH-GPD domain; manually curated; KEGG: dia:Dtpsy_2090 HhH-GPD family protein; PFAM: HhH-GPD domain; DNA-3-methyladenine glycosylase II 2411856 10483355 Alide2_2311 Alicycliphilus denitrificans K601 DNA-3-methyladenine glycosylase II YP_004388195.1 2411209 D 596154 CDS YP_004388196.1 330824893 10483356 2411908..2412885 1 NC_015422.1 PFAM: Acetyl-CoA carboxylase, alpha subunit; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: ajs:Ajs_1625 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 2412885 10483356 Alide2_2312 Alicycliphilus denitrificans K601 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_004388196.1 2411908 D 596154 CDS YP_004388197.1 330824894 10483357 2412953..2413960 1 NC_015422.1 KEGG: ajs:Ajs_1627 tRNA(Ile)-lysidine synthetase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; Lysidine-tRNA(Ile) synthetase, substrate-binding domain; tRNA(Ile)-lysidine synthetase 2413960 10483357 Alide2_2313 Alicycliphilus denitrificans K601 tRNA(Ile)-lysidine synthetase YP_004388197.1 2412953 D 596154 CDS YP_004388198.1 330824895 10483358 2413997..2415268 1 NC_015422.1 KEGG: aav:Aave_2324 aspartate kinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; aspartate kinase 2415268 10483358 Alide2_2314 Alicycliphilus denitrificans K601 aspartate kinase YP_004388198.1 2413997 D 596154 CDS YP_004388199.1 330824896 10483359 complement(2415315..2416670) 1 NC_015422.1 PFAM: Chloride channel, voltage gated; KEGG: aav:Aave_4712 Cl-channel, voltage-gated family protein; Cl- channel voltage-gated family protein 2416670 10483359 Alide2_2315 Alicycliphilus denitrificans K601 Cl- channel voltage-gated family protein YP_004388199.1 2415315 R 596154 CDS YP_004388200.1 330824897 10483361 2417121..2417729 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_1833 TetR family transcriptional regulator; TetR family transcriptional regulator 2417729 10483361 Alide2_2316 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004388200.1 2417121 D 596154 CDS YP_004388201.1 330824898 10483362 2417726..2418877 1 NC_015422.1 KEGG: dia:Dtpsy_1685 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 2418877 10483362 Alide2_2317 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004388201.1 2417726 D 596154 CDS YP_004388202.1 330824899 10483363 2418874..2420073 1 NC_015422.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_1686 protein of unknown function DUF214; hypothetical protein 2420073 10483363 Alide2_2318 Alicycliphilus denitrificans K601 hypothetical protein YP_004388202.1 2418874 D 596154 CDS YP_004388203.1 330824900 10483364 2420078..2420788 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_1836 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 2420788 10483364 Alide2_2319 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004388203.1 2420078 D 596154 CDS YP_004388204.1 330824901 10483365 complement(2420859..2422187) 1 NC_015422.1 KEGG: ajs:Ajs_1837 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like; lytic murein transglycosylase 2422187 10483365 Alide2_2320 Alicycliphilus denitrificans K601 lytic murein transglycosylase YP_004388204.1 2420859 R 596154 CDS YP_004388205.1 330824902 10483366 2422234..2423670 1 NC_015422.1 KEGG: ajs:Ajs_1838 exonuclease I; PFAM: Exonuclease C-terminal; Exonuclease, RNase T/DNA polymerase III; exodeoxyribonuclease I 2423670 10483366 Alide2_2321 Alicycliphilus denitrificans K601 exodeoxyribonuclease I YP_004388205.1 2422234 D 596154 CDS YP_004388206.1 330824903 10483367 2423642..2424490 1 NC_015422.1 PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; KEGG: ajs:Ajs_1839 silent information regulator protein Sir2; silent information regulator protein Sir2 2424490 10483367 Alide2_2322 Alicycliphilus denitrificans K601 silent information regulator protein Sir2 YP_004388206.1 2423642 D 596154 CDS YP_004388207.1 330824904 10483368 2424623..2426986 1 NC_015422.1 KEGG: dia:Dtpsy_1696 putative phytochrome sensor protein; PFAM: Uncharacterised protein family UPF0118; GAF; SMART: GAF; phytochrome sensor protein 2426986 10483368 Alide2_2323 Alicycliphilus denitrificans K601 phytochrome sensor protein YP_004388207.1 2424623 D 596154 CDS YP_004388208.1 330824905 10483369 complement(2426968..2427537) 1 NC_015422.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aav:Aave_3219 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2427537 10483369 Alide2_2324 Alicycliphilus denitrificans K601 N-acetyltransferase GCN5 YP_004388208.1 2426968 R 596154 CDS YP_004388209.1 330824906 10483370 complement(2427534..2428163) 1 NC_015422.1 KEGG: xtr:100496255 uracil phosphoribosyltransferase-like; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase; uracil phosphoribosyltransferase 2428163 10483370 Alide2_2325 Alicycliphilus denitrificans K601 uracil phosphoribosyltransferase YP_004388209.1 2427534 R 596154 CDS YP_004388210.1 330824907 10483371 complement(2428252..2429238) 1 NC_015422.1 KEGG: dia:Dtpsy_1698 pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threo-3-hydroxyaspartate ammonia-lyase 2429238 10483371 Alide2_2326 Alicycliphilus denitrificans K601 Threo-3-hydroxyaspartate ammonia-lyase YP_004388210.1 2428252 R 596154 CDS YP_004388211.1 330824908 10483372 2429489..2430193 1 NC_015422.1 PFAM: Protein of unknown function DUF28; KEGG: dia:Dtpsy_1700 hypothetical protein; hypothetical protein 2430193 10483372 Alide2_2327 Alicycliphilus denitrificans K601 hypothetical protein YP_004388211.1 2429489 D 596154 CDS YP_004388212.1 330824909 10483374 2430857..2432281 1 NC_015422.1 TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG; cytochrome c oxidase accessory protein CcoG 2432281 10483374 Alide2_2329 Alicycliphilus denitrificans K601 cytochrome c oxidase accessory protein CcoG YP_004388212.1 2430857 D 596154 CDS YP_004388213.1 330824910 10483375 2432308..2433726 1 NC_015422.1 PFAM: Cytochrome d ubiquinol oxidase, subunit I; KEGG: ara:Arad_12230 cytochrome bd-type quinol oxidase subunit 1; cytochrome bd ubiquinol oxidase subunit I 2433726 10483375 Alide2_2330 Alicycliphilus denitrificans K601 cytochrome bd ubiquinol oxidase subunit I YP_004388213.1 2432308 D 596154 CDS YP_004388214.1 330824911 10483376 2433730..2434740 1 NC_015422.1 KEGG: msl:Msil_2643 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II 2434740 10483376 Alide2_2331 Alicycliphilus denitrificans K601 cytochrome d ubiquinol oxidase subunit II YP_004388214.1 2433730 D 596154 CDS YP_004388215.1 330824912 10483377 2434740..2434886 1 NC_015422.1 PFAM: Protein of unknown function DUF2474; KEGG: ara:Arad_12232 hypothetical protein; hypothetical protein 2434886 10483377 Alide2_2332 Alicycliphilus denitrificans K601 hypothetical protein YP_004388215.1 2434740 D 596154 CDS YP_004388216.1 330824913 10483378 complement(2435301..2435996) 1 NC_015422.1 PFAM: LrgB-like protein; KEGG: dia:Dtpsy_2405 LrgB family protein; LrgB family protein 2435996 10483378 Alide2_2333 Alicycliphilus denitrificans K601 LrgB family protein YP_004388216.1 2435301 R 596154 CDS YP_004388217.1 330824914 10483379 complement(2435993..2436394) 1 NC_015422.1 PFAM: Uncharacterised protein family LrgA/YohJ; KEGG: dac:Daci_2210 LrgA family protein; LrgA family protein 2436394 10483379 Alide2_2334 Alicycliphilus denitrificans K601 LrgA family protein YP_004388217.1 2435993 R 596154 CDS YP_004388218.1 330824915 10483380 2436603..2438030 1 NC_015422.1 PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; KEGG: mpt:Mpe_A0752 GntR family transcriptional regulator; SMART: HTH transcriptional regulator, GntR; GntR family transcriptional regulator 2438030 10483380 Alide2_2335 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004388218.1 2436603 D 596154 CDS YP_004388219.1 330824916 10483381 complement(2438119..2438820) 1 NC_015422.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: dia:Dtpsy_1701 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein 2438820 10483381 Alide2_2336 Alicycliphilus denitrificans K601 glutathione S-transferase domain-containing protein YP_004388219.1 2438119 R 596154 CDS YP_004388220.1 330824917 10483382 complement(2438891..2440396) 1 NC_015422.1 KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase putative; PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, putative; SMART: ATPase, AAA+ type, core; hypothetical protein 2440396 10483382 Alide2_2337 Alicycliphilus denitrificans K601 hypothetical protein YP_004388220.1 2438891 R 596154 CDS YP_004388221.1 330824918 10483383 2440469..2441188 1 NC_015422.1 TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: dia:Dtpsy_1703 hypothetical protein; PFAM: Protein of unknown function DUF28; hypothetical protein 2441188 10483383 Alide2_2338 Alicycliphilus denitrificans K601 hypothetical protein YP_004388221.1 2440469 D 596154 CDS YP_004388222.1 330824919 10483384 2441185..2442471 1 NC_015422.1 TIGRFAM: Phosphoribosylglycinamide synthetase; KEGG: ajs:Ajs_1899 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine--glycine ligase 2442471 10483384 Alide2_2339 Alicycliphilus denitrificans K601 phosphoribosylamine--glycine ligase YP_004388222.1 2441185 D 596154 CDS YP_004388223.1 330824920 10483385 2442471..2443397 1 NC_015422.1 HAMAP: Coproporphyrinogen III oxidase; KEGG: dia:Dtpsy_1705 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase; coproporphyrinogen-III oxidase 2443397 10483385 Alide2_2340 Alicycliphilus denitrificans K601 coproporphyrinogen-III oxidase YP_004388223.1 2442471 D 596154 CDS YP_004388224.1 330824921 10483386 2443481..2444161 1 NC_015422.1 KEGG: dia:Dtpsy_1706 iojap-like protein; TIGRFAM: Ribosome-associated, Iojap-like; PFAM: Ribosome-associated, Iojap-like; iojap family protein 2444161 10483386 Alide2_2341 Alicycliphilus denitrificans K601 iojap family protein YP_004388224.1 2443481 D 596154 CDS YP_004388225.1 330824922 10483387 2444161..2444628 1 NC_015422.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase H; HAMAP: SPOUT methyltransferase, predicted; KEGG: aav:Aave_3199 rRNA large subunit methyltransferase; PFAM: SPOUT methyltransferase, predicted; ribosomal RNA large subunit methyltransferase H 2444628 10483387 Alide2_2342 Alicycliphilus denitrificans K601 ribosomal RNA large subunit methyltransferase H YP_004388225.1 2444161 D 596154 CDS YP_004388226.1 330824923 10483388 2444696..2445301 1 NC_015422.1 KEGG: xtr:100495456 hypothetical protein LOC100495456; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; maf protein 2445301 10483388 Alide2_2343 Alicycliphilus denitrificans K601 maf protein YP_004388226.1 2444696 D 596154 CDS YP_004388227.1 330824924 10483389 complement(2445307..2446026) 1 NC_015422.1 KEGG: dia:Dtpsy_1709 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; Crp/Fnr family transcriptional regulator 2446026 10483389 Alide2_2344 Alicycliphilus denitrificans K601 Crp/Fnr family transcriptional regulator YP_004388227.1 2445307 R 596154 CDS YP_004388228.1 330824925 10483390 complement(2446233..2447828) 1 NC_015422.1 KEGG: dia:Dtpsy_1710 cytochrome d1 heme region; PFAM: Cytochrome c, class I; hydroxylamine reductase 2447828 10483390 Alide2_2345 Alicycliphilus denitrificans K601 hydroxylamine reductase YP_004388228.1 2446233 R 596154 CDS YP_004388229.1 330824926 10483391 complement(2447821..2449041) 1 NC_015422.1 KEGG: dia:Dtpsy_1711 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 2449041 10483391 Alide2_2346 Alicycliphilus denitrificans K601 radical SAM protein YP_004388229.1 2447821 R 596154 CDS YP_004388230.1 330824927 10483392 complement(2449044..2449523) 1 NC_015422.1 KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator; AsnC family transcriptional regulator 2449523 10483392 Alide2_2347 Alicycliphilus denitrificans K601 AsnC family transcriptional regulator YP_004388230.1 2449044 R 596154 CDS YP_004388231.1 330824928 10483393 complement(2449504..2451006) 1 NC_015422.1 KEGG: dia:Dtpsy_1714 putative transcriptional regulator, AsnC family; hypothetical protein 2451006 10483393 Alide2_2348 Alicycliphilus denitrificans K601 hypothetical protein YP_004388231.1 2449504 R 596154 CDS YP_004388232.1 330824929 10483394 complement(2451010..2452218) 1 NC_015422.1 KEGG: ajs:Ajs_1910 cytochrome d1, heme region; cytochrome d1, heme region 2452218 10483394 Alide2_2349 Alicycliphilus denitrificans K601 cytochrome d1, heme region YP_004388232.1 2451010 R 596154 CDS YP_004388233.1 330824930 10483395 complement(2452215..2452568) 1 NC_015422.1 KEGG: dia:Dtpsy_1716 hypothetical protein; hypothetical protein 2452568 10483395 Alide2_2350 Alicycliphilus denitrificans K601 hypothetical protein YP_004388233.1 2452215 R 596154 CDS YP_004388234.1 330824931 10483396 complement(2452591..2454315) 1 NC_015422.1 KEGG: dia:Dtpsy_1717 hydroxylamine reductase; PFAM: Cytochrome c, class I; hydroxylamine reductase 2454315 10483396 Alide2_2351 Alicycliphilus denitrificans K601 hydroxylamine reductase YP_004388234.1 2452591 R 596154 CDS YP_004388235.1 330824932 10483397 2454527..2455354 1 NC_015422.1 TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: dia:Dtpsy_1718 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; uroporphyrin-III C-methyltransferase 2455354 10483397 Alide2_2352 Alicycliphilus denitrificans K601 uroporphyrin-III C-methyltransferase YP_004388235.1 2454527 D 596154 CDS YP_004388236.1 330824933 10483398 2455436..2456923 1 NC_015422.1 TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: ajs:Ajs_1914 ribonuclease G; SMART: RNA-binding domain, S1; Rne/Rng family ribonuclease 2456923 10483398 Alide2_2353 Alicycliphilus denitrificans K601 Rne/Rng family ribonuclease YP_004388236.1 2455436 D 596154 CDS YP_004388237.1 330824934 10483399 2457099..2458784 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pca:Pcar_0095 putative sensory transduction system, regulatory protein; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 2458784 10483399 Alide2_2354 Alicycliphilus denitrificans K601 diguanylate cyclase YP_004388237.1 2457099 D 596154 CDS YP_004388238.1 330824935 10483400 complement(2458718..2459491) 1 NC_015422.1 PFAM: LysR, substrate-binding; KEGG: hmg:100212933 similar to lysR transcriptional regulator; LysR family transcriptional regulator 2459491 10483400 Alide2_2355 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388238.1 2458718 R 596154 CDS YP_004388239.1 330824936 10483401 complement(2459560..2460711) 1 NC_015422.1 KEGG: dia:Dtpsy_1720 putative aminotransferase; PFAM: Aminotransferase, class I/classII; kynurenine--oxoglutarate transaminase 2460711 10483401 Alide2_2356 Alicycliphilus denitrificans K601 kynurenine--oxoglutarate transaminase YP_004388239.1 2459560 R 596154 CDS YP_004388240.1 330824937 10483402 complement(2460853..2461794) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1721 transcriptional regulator CysB-like protein; LysR family transcriptional regulator 2461794 10483402 Alide2_2357 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388240.1 2460853 R 596154 CDS YP_004388241.1 330824938 10483403 complement(2461838..2462218) 1 NC_015422.1 PFAM: Cobalamin (vitamin B12) biosynthesis CbiX; KEGG: dia:Dtpsy_1722 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2462218 10483403 Alide2_2358 Alicycliphilus denitrificans K601 cobalamin (vitamin B12) biosynthesis CbiX protein YP_004388241.1 2461838 R 596154 CDS YP_004388242.1 330824939 10483404 complement(2462252..2463352) 1 NC_015422.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: dia:Dtpsy_1723 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 2463352 10483404 Alide2_2359 Alicycliphilus denitrificans K601 YjgP/YjgQ family permease YP_004388242.1 2462252 R 596154 CDS YP_004388243.1 330824940 10483405 complement(2463349..2464443) 1 NC_015422.1 KEGG: dia:Dtpsy_1724 permease YjgP/YjgQ family protein; manually curated; PFAM: Permease YjgP/YjgQ, predicted; YjgP/YjgQ family permease 2464443 10483405 Alide2_2360 Alicycliphilus denitrificans K601 YjgP/YjgQ family permease YP_004388243.1 2463349 R 596154 CDS YP_004388244.1 330824941 10483406 2464467..2465960 1 NC_015422.1 PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal; KEGG: ajs:Ajs_1921 PepA aminopeptidase; peptidase M17 leucyl aminopeptidase domain-containing protein 2465960 10483406 Alide2_2361 Alicycliphilus denitrificans K601 peptidase M17 leucyl aminopeptidase domain-containing protein YP_004388244.1 2464467 D 596154 CDS YP_004388245.1 330824942 10483407 2465960..2466424 1 NC_015422.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: ajs:Ajs_1922 DNA polymerase III chi subunit, HolC; DNA polymerase III subunit chi HolC 2466424 10483407 Alide2_2362 Alicycliphilus denitrificans K601 DNA polymerase III subunit chi HolC YP_004388245.1 2465960 D 596154 CDS YP_004388246.1 330824943 10483408 2466424..2466825 1 NC_015422.1 KEGG: dia:Dtpsy_1727 hypothetical protein; hypothetical protein 2466825 10483408 Alide2_2363 Alicycliphilus denitrificans K601 hypothetical protein YP_004388246.1 2466424 D 596154 CDS YP_004388247.1 330824944 10483409 2466954..2468087 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1925 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2468087 10483409 Alide2_2364 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004388247.1 2466954 D 596154 CDS YP_004388248.1 330824945 10483410 complement(2468178..2469185) 1 NC_015422.1 KEGG: ajs:Ajs_1926 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase 2469185 10483410 Alide2_2365 Alicycliphilus denitrificans K601 phosphoglycerate dehydrogenase YP_004388248.1 2468178 R 596154 CDS YP_004388249.1 330824946 10483414 2471601..2472131 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_1927 hypothetical protein; hypothetical protein 2472131 10483414 Alide2_2369 Alicycliphilus denitrificans K601 hypothetical protein YP_004388249.1 2471601 D 596154 CDS YP_004388250.1 330824947 10483415 2472156..2472905 1 NC_015422.1 KEGG: dia:Dtpsy_1731 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2257; hypothetical protein 2472905 10483415 Alide2_2370 Alicycliphilus denitrificans K601 hypothetical protein YP_004388250.1 2472156 D 596154 CDS YP_004388251.1 330824948 10483416 2473000..2473440 1 NC_015422.1 PFAM: UspA; KEGG: dia:Dtpsy_1732 UspA domain protein; UspA domain-containing protein 2473440 10483416 Alide2_2371 Alicycliphilus denitrificans K601 UspA domain-containing protein YP_004388251.1 2473000 D 596154 CDS YP_004388252.1 330824949 10483417 complement(2473502..2474014) 1 NC_015422.1 KEGG: dac:Daci_4355 hypothetical protein; TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Haemerythrin/HHE cation-binding motif; hemerythrin-like metal-binding protein 2474014 10483417 Alide2_2372 Alicycliphilus denitrificans K601 hemerythrin-like metal-binding protein YP_004388252.1 2473502 R 596154 CDS YP_004388253.1 330824950 10483418 complement(2474127..2475104) 1 NC_015422.1 KEGG: ajs:Ajs_1930 hypothetical protein; hypothetical protein 2475104 10483418 Alide2_2373 Alicycliphilus denitrificans K601 hypothetical protein YP_004388253.1 2474127 R 596154 CDS YP_004388254.1 330824951 10483419 complement(2475245..2476429) 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: xtr:100490341 acetyl-CoA acetyltransferase-like; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 2476429 10483419 Alide2_2374 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004388254.1 2475245 R 596154 CDS YP_004388255.1 330824952 10483420 complement(2476538..2477308) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1735 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2477308 10483420 Alide2_2375 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004388255.1 2476538 R 596154 CDS YP_004388256.1 330824953 10483421 complement(2477342..2478019) 1 NC_015422.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: ajs:Ajs_1933 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 2478019 10483421 Alide2_2376 Alicycliphilus denitrificans K601 pseudouridine synthase YP_004388256.1 2477342 R 596154 CDS YP_004388257.1 330824954 10483422 complement(2478009..2480177) 1 NC_015422.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; Signal transduction response regulator, receiver domain; KEGG: dia:Dtpsy_1737 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; Signal transduction response regulator, receiver domain; PAS/PAC sensor hybrid histidine kinase 2480177 10483422 Alide2_2377 Alicycliphilus denitrificans K601 PAS/PAC sensor hybrid histidine kinase YP_004388257.1 2478009 R 596154 CDS YP_004388258.1 330824955 10483423 complement(2480223..2480621) 1 NC_015422.1 KEGG: dia:Dtpsy_1738 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidyl-prolyl isomerase 2480621 10483423 Alide2_2378 Alicycliphilus denitrificans K601 peptidyl-prolyl isomerase YP_004388258.1 2480223 R 596154 CDS YP_004388259.1 330824956 10483424 2480901..2481695 1 NC_015422.1 KEGG: dia:Dtpsy_1772 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; two component LuxR family transcriptional regulator 2481695 10483424 Alide2_2379 Alicycliphilus denitrificans K601 two component LuxR family transcriptional regulator YP_004388259.1 2480901 D 596154 CDS YP_004388260.1 330824957 10483425 2481733..2482593 1 NC_015422.1 KEGG: dia:Dtpsy_1773 putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; integral membrane sensor signal transduction histidine kinase 2482593 10483425 Alide2_2380 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004388260.1 2481733 D 596154 CDS YP_004388261.1 330824958 10483426 2482685..2483272 1 NC_015422.1 KEGG: dia:Dtpsy_1406 hypothetical protein; hypothetical protein 2483272 10483426 Alide2_2381 Alicycliphilus denitrificans K601 hypothetical protein YP_004388261.1 2482685 D 596154 CDS YP_004388262.1 330824959 10483427 complement(2483280..2484110) 1 NC_015422.1 PFAM: Redoxin; KEGG: ajs:Ajs_2433 redoxin domain-containing protein; redoxin domain-containing protein 2484110 10483427 Alide2_2382 Alicycliphilus denitrificans K601 redoxin domain-containing protein YP_004388262.1 2483280 R 596154 CDS YP_004388263.1 330824960 10483428 2484337..2484960 1 NC_015422.1 KEGG: dia:Dtpsy_1426 2',5' RNA ligase; 2',5' RNA ligase 2484960 10483428 Alide2_2383 Alicycliphilus denitrificans K601 2',5' RNA ligase YP_004388263.1 2484337 D 596154 CDS YP_004388264.1 330824961 10483429 complement(2485035..2485514) 1 NC_015422.1 KEGG: ajs:Ajs_2417 hypothetical protein; hypothetical protein 2485514 10483429 Alide2_2384 Alicycliphilus denitrificans K601 hypothetical protein YP_004388264.1 2485035 R 596154 CDS YP_004388265.1 330824962 10483430 complement(2485641..2486111) 1 NC_015422.1 KEGG: dia:Dtpsy_1431 hypothetical protein; hypothetical protein 2486111 10483430 Alide2_2385 Alicycliphilus denitrificans K601 hypothetical protein YP_004388265.1 2485641 R 596154 CDS YP_004388266.1 330824963 10483431 complement(2486108..2486551) 1 NC_015422.1 KEGG: dia:Dtpsy_1432 putative transmembrane anti-sigma factor; transmembrane anti-sigma factor 2486551 10483431 Alide2_2386 Alicycliphilus denitrificans K601 transmembrane anti-sigma factor YP_004388266.1 2486108 R 596154 CDS YP_004388267.1 330824964 10483432 complement(2486567..2487121) 1 NC_015422.1 KEGG: dia:Dtpsy_1433 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 subunit 2487121 10483432 Alide2_2387 Alicycliphilus denitrificans K601 ECF subfamily RNA polymerase sigma-24 subunit YP_004388267.1 2486567 R 596154 CDS YP_004388268.1 330824965 10483433 2487224..2487544 1 NC_015422.1 KEGG: dia:Dtpsy_1434 hypothetical protein; hypothetical protein 2487544 10483433 Alide2_2388 Alicycliphilus denitrificans K601 hypothetical protein YP_004388268.1 2487224 D 596154 CDS YP_004388269.1 330824966 10483434 2487596..2489047 1 NC_015422.1 PFAM: (Uracil-5)-methyltransferase; manually curated; TIGRFAM: 23S rRNA methyltransferase/RumA; KEGG: dia:Dtpsy_1435 23S rRNA 5-methyluridine methyltransferase; HAMAP: 23S rRNA methyltransferase/RumA; 23S rRNA (uracil-5-)-methyltransferase rumA 2489047 10483434 Alide2_2389 Alicycliphilus denitrificans K601 23S rRNA (uracil-5-)-methyltransferase rumA YP_004388269.1 2487596 D 596154 CDS YP_004388270.1 330824967 10483435 2489059..2490402 1 NC_015422.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: D-serine ammonia-lyase; HAMAP: D-serine dehydratase; KEGG: ajs:Ajs_2250 D-serine dehydratase; D-serine dehydratase 2490402 10483435 Alide2_2390 Alicycliphilus denitrificans K601 D-serine dehydratase YP_004388270.1 2489059 D 596154 CDS YP_004388271.1 330824968 10483436 complement(2490418..2491008) 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: ajs:Ajs_2244 hypothetical protein; hypothetical protein 2491008 10483436 Alide2_2391 Alicycliphilus denitrificans K601 hypothetical protein YP_004388271.1 2490418 R 596154 CDS YP_004388272.1 330824969 10483437 2491190..2491648 1 NC_015422.1 KEGG: har:HEAR1365 azurin precursor; TIGRFAM: Azurin, proteobacteria; PFAM: Blue (type 1) copper domain; azurin blue-copper protein 2491648 10483437 Alide2_2392 Alicycliphilus denitrificans K601 azurin blue-copper protein YP_004388272.1 2491190 D 596154 CDS YP_004388273.1 330824970 10483438 2491725..2494151 1 NC_015422.1 HAMAP: Uncharacterised protein family UPF0313; PFAM: Radical SAM N-terminal; Radical SAM; KEGG: dia:Dtpsy_1631 radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 2494151 10483438 Alide2_2393 Alicycliphilus denitrificans K601 hypothetical protein YP_004388273.1 2491725 D 596154 CDS YP_004388274.1 330824971 10483439 complement(2494261..2495457) 1 NC_015422.1 KEGG: ajs:Ajs_2151 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/classII; aspartate transaminase 2495457 10483439 Alide2_2394 Alicycliphilus denitrificans K601 aspartate transaminase YP_004388274.1 2494261 R 596154 CDS YP_004388275.1 330824972 10483440 2495573..2497660 1 NC_015422.1 TIGRFAM: Excinuclease ABC, B subunit; PFAM: Helicase, C-terminal; UvrB/UvrC protein; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: dia:Dtpsy_1636 excinuclease ABC subunit B; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; excinuclease ABC subunit B 2497660 10483440 Alide2_2395 Alicycliphilus denitrificans K601 excinuclease ABC subunit B YP_004388275.1 2495573 D 596154 CDS YP_004388276.1 330824973 10483441 2497911..2498447 1 NC_015422.1 KEGG: dia:Dtpsy_1637 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: ISC system FeS cluster assembly, IscR transcription factor; Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2; BadM/Rrf2 family transcriptional regulator 2498447 10483441 Alide2_2396 Alicycliphilus denitrificans K601 BadM/Rrf2 family transcriptional regulator YP_004388276.1 2497911 D 596154 CDS YP_004388277.1 330824974 10483442 2498523..2499743 1 NC_015422.1 TIGRFAM: Cysteine desulfurase; KEGG: dia:Dtpsy_1638 cysteine desulfurase IscS; PFAM: Aminotransferase, class V/Cysteine desulfurase; cysteine desulfurase IscS 2499743 10483442 Alide2_2397 Alicycliphilus denitrificans K601 cysteine desulfurase IscS YP_004388277.1 2498523 D 596154 CDS YP_004388278.1 330824975 10483443 2499766..2500167 1 NC_015422.1 KEGG: dia:Dtpsy_1639 FeS cluster assembly scaffold IscU; TIGRFAM: ISC system FeS cluster assembly, IscU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; FeS cluster assembly scaffold IscU 2500167 10483443 Alide2_2398 Alicycliphilus denitrificans K601 FeS cluster assembly scaffold IscU YP_004388278.1 2499766 D 596154 CDS YP_004388279.1 330824976 10483444 2500175..2500498 1 NC_015422.1 KEGG: dia:Dtpsy_1640 iron-sulfur cluster assembly protein IscA; TIGRFAM: ISC system FeS cluster assembly, IscA scaffold; FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly protein IscA 2500498 10483444 Alide2_2399 Alicycliphilus denitrificans K601 iron-sulfur cluster assembly protein IscA YP_004388279.1 2500175 D 596154 CDS YP_004388280.1 330824977 10483445 2500556..2501074 1 NC_015422.1 TIGRFAM: Co-chaperone Hsc20; PFAM: Heat shock cognate protein B, C-terminal oligomerisation; Heat shock protein DnaJ, N-terminal; KEGG: dia:Dtpsy_1641 co-chaperone Hsc20; SMART: Heat shock protein DnaJ, N-terminal; co-chaperone Hsc20 2501074 10483445 Alide2_2400 Alicycliphilus denitrificans K601 co-chaperone Hsc20 YP_004388280.1 2500556 D 596154 CDS YP_004388281.1 330824978 10483446 2501111..2502979 1 NC_015422.1 KEGG: dia:Dtpsy_1642 chaperone protein HscA; TIGRFAM: ISC system FeS cluster assembly, HscA chaperone; PFAM: Heat shock protein 70; Fe-S protein assembly chaperone HscA 2502979 10483446 Alide2_2401 Alicycliphilus denitrificans K601 Fe-S protein assembly chaperone HscA YP_004388281.1 2501111 D 596154 CDS YP_004388282.1 330824979 10483447 2503015..2503353 1 NC_015422.1 KEGG: dia:Dtpsy_1643 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: Ferredoxin, 2Fe-2S type; PFAM: Ferredoxin; ferredoxin, 2Fe-2S type, ISC system 2503353 10483447 Alide2_2402 Alicycliphilus denitrificans K601 ferredoxin, 2Fe-2S type, ISC system YP_004388282.1 2503015 D 596154 CDS YP_004388283.1 330824980 10483448 2503353..2504081 1 NC_015422.1 SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: ajs:Ajs_2138 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; DNA polymerase III subunit epsilon 2504081 10483448 Alide2_2403 Alicycliphilus denitrificans K601 DNA polymerase III subunit epsilon YP_004388283.1 2503353 D 596154 CDS YP_004388284.1 330824981 10483451 2504375..2505487 1 NC_015422.1 PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2136 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2505487 10483451 Alide2_2404 Alicycliphilus denitrificans K601 FAD dependent oxidoreductase YP_004388284.1 2504375 D 596154 CDS YP_004388285.1 330824982 10483452 2505620..2505928 1 NC_015422.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB; hypothetical protein 2505928 10483452 Alide2_2405 Alicycliphilus denitrificans K601 hypothetical protein YP_004388285.1 2505620 D 596154 CDS YP_004388286.1 330824983 10483453 2505953..2506357 1 NC_015422.1 KEGG: dia:Dtpsy_1648 hypothetical protein; hypothetical protein 2506357 10483453 Alide2_2406 Alicycliphilus denitrificans K601 hypothetical protein YP_004388286.1 2505953 D 596154 CDS YP_004388287.1 330824984 10483454 2506359..2506658 1 NC_015422.1 KEGG: ajs:Ajs_2133 hypothetical protein; hypothetical protein 2506658 10483454 Alide2_2407 Alicycliphilus denitrificans K601 hypothetical protein YP_004388287.1 2506359 D 596154 CDS YP_004388288.1 330824985 10483455 complement(2506711..2507757) 1 NC_015422.1 TIGRFAM: Dihydroorotate dehydrogenase, class 2; KEGG: ajs:Ajs_2132 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; dihydroorotate dehydrogenase 2507757 10483455 Alide2_2408 Alicycliphilus denitrificans K601 dihydroorotate dehydrogenase YP_004388288.1 2506711 R 596154 CDS YP_004388289.1 330824986 10483456 2507793..2508482 1 NC_015422.1 TIGRFAM: Ribose 5-phosphate isomerase, type A; KEGG: ajs:Ajs_2131 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase, type A; ribose 5-phosphate isomerase 2508482 10483456 Alide2_2409 Alicycliphilus denitrificans K601 ribose 5-phosphate isomerase YP_004388289.1 2507793 D 596154 CDS YP_004388290.1 330824987 10483457 complement(2508479..2509120) 1 NC_015422.1 PFAM: Glutaredoxin; KEGG: dia:Dtpsy_1652 glutaredoxin; glutaredoxin 2509120 10483457 Alide2_2410 Alicycliphilus denitrificans K601 glutaredoxin YP_004388290.1 2508479 R 596154 CDS YP_004388291.1 330824988 10483458 complement(2509242..2511275) 1 NC_015422.1 KEGG: ajs:Ajs_2129 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; oligopeptidase A 2511275 10483458 Alide2_2411 Alicycliphilus denitrificans K601 oligopeptidase A YP_004388291.1 2509242 R 596154 CDS YP_004388292.1 330824989 10483459 complement(2511313..2512161) 1 NC_015422.1 KEGG: dac:Daci_3983 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methylenetetrahydrofolate dehydrogenase 2512161 10483459 Alide2_2412 Alicycliphilus denitrificans K601 methylenetetrahydrofolate dehydrogenase YP_004388292.1 2511313 R 596154 CDS YP_004388293.1 330824990 10483460 complement(2512244..2512870) 1 NC_015422.1 KEGG: ctt:CtCNB1_2245 two component transcriptional regulator, LuxR; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator 2512870 10483460 Alide2_2413 Alicycliphilus denitrificans K601 two component LuxR family transcriptional regulator YP_004388293.1 2512244 R 596154 CDS YP_004388294.1 330824991 10483461 complement(2512867..2515419) 1 NC_015422.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_1656 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; multi-sensor signal transduction histidine kinase 2515419 10483461 Alide2_2414 Alicycliphilus denitrificans K601 multi-sensor signal transduction histidine kinase YP_004388294.1 2512867 R 596154 CDS YP_004388295.1 330824992 10483462 2515616..2518312 1 NC_015422.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; KEGG: dia:Dtpsy_1657 pyruvate dehydrogenase subunit E1; PFAM: Transketolase, N-terminal; 2-oxo-acid dehydrogenase E1 subunit 2518312 10483462 Alide2_2415 Alicycliphilus denitrificans K601 2-oxo-acid dehydrogenase E1 subunit YP_004388295.1 2515616 D 596154 CDS YP_004388296.1 330824993 10483463 2518331..2519980 1 NC_015422.1 TIGRFAM: Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex; KEGG: dia:Dtpsy_1658 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 2519980 10483463 Alide2_2416 Alicycliphilus denitrificans K601 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_004388296.1 2518331 D 596154 CDS YP_004388297.1 330824994 10483464 2519994..2521823 1 NC_015422.1 KEGG: dia:Dtpsy_1659 dihydrolipoamide dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Biotin/lipoyl attachment; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; dihydrolipoamide dehydrogenase 2521823 10483464 Alide2_2417 Alicycliphilus denitrificans K601 dihydrolipoamide dehydrogenase YP_004388297.1 2519994 D 596154 CDS YP_004388298.1 330824995 10483465 2521975..2522256 1 NC_015422.1 hypothetical protein 2522256 10483465 Alide2_2418 Alicycliphilus denitrificans K601 hypothetical protein YP_004388298.1 2521975 D 596154 CDS YP_004388299.1 330824996 10483466 2522246..2522620 1 NC_015422.1 hypothetical protein 2522620 10483466 Alide2_2419 Alicycliphilus denitrificans K601 hypothetical protein YP_004388299.1 2522246 D 596154 CDS YP_004388300.1 330824997 10483467 2523121..2524089 1 NC_015422.1 KEGG: aav:Aave_2466 hypothetical protein; hypothetical protein 2524089 10483467 Alide2_2420 Alicycliphilus denitrificans K601 hypothetical protein YP_004388300.1 2523121 D 596154 CDS YP_004388301.1 330824998 10483468 2524156..2525586 1 NC_015422.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: pna:Pnap_3558 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2525586 10483468 Alide2_2421 Alicycliphilus denitrificans K601 filamentation induced by cAMP protein fic YP_004388301.1 2524156 D 596154 CDS YP_004388302.1 330824999 10483469 2525645..2526343 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1341 transcriptional regulator, LysR family; LysR family transcriptional regulator 2526343 10483469 Alide2_2422 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388302.1 2525645 D 596154 CDS YP_004388303.1 330825000 10483470 2526383..2526562 1 NC_015422.1 KEGG: ajs:Ajs_1877 transposase Tn3; transposase Tn3 2526562 10483470 Alide2_2423 Alicycliphilus denitrificans K601 transposase Tn3 YP_004388303.1 2526383 D 596154 CDS YP_004388304.1 330825001 10483473 2527502..2527924 1 NC_015422.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 2527924 10483473 Alide2_2426 Alicycliphilus denitrificans K601 IS66 Orf2 family protein YP_004388304.1 2527502 D 596154 CDS YP_004388305.1 330825002 10483474 2527918..2529432 1 NC_015422.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66 2529432 10483474 Alide2_2427 Alicycliphilus denitrificans K601 transposase IS66 YP_004388305.1 2527918 D 596154 CDS YP_004388306.1 330825003 10483476 complement(2529892..2530158) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911; transposase IS3/IS911 family protein 2530158 10483476 Alide2_2429 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004388306.1 2529892 R 596154 CDS YP_004388307.1 330825004 10483478 2530458..2531447 1 NC_015422.1 KEGG: reu:Reut_B3949 hypothetical protein; hypothetical protein 2531447 10483478 Alide2_2431 Alicycliphilus denitrificans K601 hypothetical protein YP_004388307.1 2530458 D 596154 CDS YP_004388308.1 330825005 10483479 2531565..2532506 1 NC_015422.1 PFAM: S-adenosylmethionine-dependent methyltransferase; KEGG: dia:Dtpsy_1661 hypothetical protein; S-adenosylmethionine-dependent methyltransferase 2532506 10483479 Alide2_2432 Alicycliphilus denitrificans K601 S-adenosylmethionine-dependent methyltransferase YP_004388308.1 2531565 D 596154 CDS YP_004388309.1 330825006 10483481 2533166..2534050 1 NC_015422.1 KEGG: ajs:Ajs_2093 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 2534050 10483481 Alide2_2434 Alicycliphilus denitrificans K601 2-hydroxy-3-oxopropionate reductase YP_004388309.1 2533166 D 596154 CDS YP_004388310.1 330825007 10483482 complement(2534054..2534716) 1 NC_015422.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; hypothetical protein 2534716 10483482 Alide2_2435 Alicycliphilus denitrificans K601 hypothetical protein YP_004388310.1 2534054 R 596154 CDS YP_004388311.1 330825008 10483483 complement(2534741..2535247) 1 NC_015422.1 PFAM: Protein of unknown function DUF55; KEGG: aav:Aave_2834 hypothetical protein; hypothetical protein 2535247 10483483 Alide2_2436 Alicycliphilus denitrificans K601 hypothetical protein YP_004388311.1 2534741 R 596154 CDS YP_004388312.1 330825009 10483484 complement(2535244..2535495) 1 NC_015422.1 PFAM: Transglycosylase-associated protein; KEGG: aav:Aave_2831 transglycosylase-associated protein; transglycosylase-associated protein 2535495 10483484 Alide2_2437 Alicycliphilus denitrificans K601 transglycosylase-associated protein YP_004388312.1 2535244 R 596154 CDS YP_004388313.1 330825010 10483485 complement(2535671..2536243) 1 NC_015422.1 KEGG: ajs:Ajs_2091 NLP/P60 protein; manually curated; PFAM: NLP/P60; NLP/P60 protein 2536243 10483485 Alide2_2438 Alicycliphilus denitrificans K601 NLP/P60 protein YP_004388313.1 2535671 R 596154 CDS YP_004388314.1 330825011 10483486 2536539..2537963 1 NC_015422.1 PFAM: Amino acid permease domain; KEGG: dac:Daci_3739 D-alanine/D-serine/glycine permease; amino acid permease-associated protein 2537963 10483486 Alide2_2439 Alicycliphilus denitrificans K601 amino acid permease-associated protein YP_004388314.1 2536539 D 596154 CDS YP_004388315.1 330825012 10483487 2538064..2539482 1 NC_015422.1 KEGG: dia:Dtpsy_1665 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; EmrB/QacA subfamily drug resistance transporter 2539482 10483487 Alide2_2440 Alicycliphilus denitrificans K601 EmrB/QacA subfamily drug resistance transporter YP_004388315.1 2538064 D 596154 CDS YP_004388316.1 330825013 10483488 2539679..2542843 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; CHASE; PAS fold; KEGG: dia:Dtpsy_1667 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase 2542843 10483488 Alide2_2441 Alicycliphilus denitrificans K601 PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase YP_004388316.1 2539679 D 596154 CDS YP_004388317.1 330825014 10483489 2542858..2543187 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0060; KEGG: ajs:Ajs_2087 hypothetical protein; hypothetical protein 2543187 10483489 Alide2_2442 Alicycliphilus denitrificans K601 hypothetical protein YP_004388317.1 2542858 D 596154 CDS YP_004388318.1 330825015 10483490 complement(2543342..2544001) 1 NC_015422.1 KEGG: nar:Saro_2119 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein 2544001 10483490 Alide2_2443 Alicycliphilus denitrificans K601 PEP motif putative anchor domain-containing protein YP_004388318.1 2543342 R 596154 CDS YP_004388319.1 330825016 10483491 2544270..2547794 1 NC_015422.1 TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC; KEGG: dia:Dtpsy_1669 chromosome segregation protein SMC; SMART: SMCs flexible hinge; chromosome segregation protein SMC 2547794 10483491 Alide2_2444 Alicycliphilus denitrificans K601 chromosome segregation protein SMC YP_004388319.1 2544270 D 596154 CDS YP_004388320.1 330825017 10483492 2547805..2548899 1 NC_015422.1 SMART: ZipA, C-terminal FtsZ-binding domain; KEGG: dia:Dtpsy_1670 ZipA FtsZ-binding region; ZipA FtsZ-binding region protein 2548899 10483492 Alide2_2445 Alicycliphilus denitrificans K601 ZipA FtsZ-binding region protein YP_004388320.1 2547805 D 596154 CDS YP_004388321.1 330825018 10483493 2548911..2551064 1 NC_015422.1 SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: ajs:Ajs_2083 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase, adenylation; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; NAD-dependent DNA ligase, OB-fold; DNA ligase 2551064 10483493 Alide2_2446 Alicycliphilus denitrificans K601 DNA ligase YP_004388321.1 2548911 D 596154 CDS YP_004388322.1 330825019 10483494 2551068..2552003 1 NC_015422.1 PFAM: Patatin/Phospholipase A2-related; KEGG: ajs:Ajs_2082 patatin; patatin 2552003 10483494 Alide2_2447 Alicycliphilus denitrificans K601 patatin YP_004388322.1 2551068 D 596154 CDS YP_004388323.1 330825020 10483495 2552191..2554674 1 NC_015422.1 KEGG: ajs:Ajs_2081 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; peptidoglycan glycosyltransferase 2554674 10483495 Alide2_2448 Alicycliphilus denitrificans K601 peptidoglycan glycosyltransferase YP_004388323.1 2552191 D 596154 CDS YP_004388324.1 330825021 10483496 2554685..2555881 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1675 major facilitator superfamily MFS_1; major facilitator superfamily protein 2555881 10483496 Alide2_2449 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004388324.1 2554685 D 596154 CDS YP_004388325.1 330825022 10483497 complement(2555874..2556422) 1 NC_015422.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_1676 NUDIX hydrolase; NUDIX hydrolase 2556422 10483497 Alide2_2450 Alicycliphilus denitrificans K601 NUDIX hydrolase YP_004388325.1 2555874 R 596154 CDS YP_004388326.1 330825023 10483498 complement(2556490..2557185) 1 NC_015422.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: dia:Dtpsy_1677 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 2557185 10483498 Alide2_2451 Alicycliphilus denitrificans K601 fumarylacetoacetate (FAA) hydrolase YP_004388326.1 2556490 R 596154 CDS YP_004388327.1 330825024 10483499 2557299..2557964 1 NC_015422.1 TIGRFAM: Maleylacetoacetate isomerase; KEGG: dia:Dtpsy_1678 maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal; maleylacetoacetate isomerase 2557964 10483499 Alide2_2452 Alicycliphilus denitrificans K601 maleylacetoacetate isomerase YP_004388327.1 2557299 D 596154 CDS YP_004388328.1 330825025 10483500 2557957..2558805 1 NC_015422.1 KEGG: dia:Dtpsy_1679 protein of unknown function DUF152; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase; multi-copper polyphenol oxidoreductase, laccase 2558805 10483500 Alide2_2453 Alicycliphilus denitrificans K601 multi-copper polyphenol oxidoreductase, laccase YP_004388328.1 2557957 D 596154 CDS YP_004388329.1 330825026 10483501 complement(2558725..2559015) 1 NC_015422.1 KEGG: dia:Dtpsy_1680 hypothetical protein; hypothetical protein 2559015 10483501 Alide2_2454 Alicycliphilus denitrificans K601 hypothetical protein YP_004388329.1 2558725 R 596154 CDS YP_004388330.1 330825027 10483502 2559166..2560875 1 NC_015422.1 KEGG: dia:Dtpsy_1681 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; poly(R)-hydroxyalkanoic acid synthase 2560875 10483502 Alide2_2455 Alicycliphilus denitrificans K601 poly(R)-hydroxyalkanoic acid synthase YP_004388330.1 2559166 D 596154 CDS YP_004388331.1 330825028 10483503 2560955..2562133 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: ajs:Ajs_2073 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 2562133 10483503 Alide2_2456 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004388331.1 2560955 D 596154 CDS YP_004388332.1 330825029 10483504 2562293..2563030 1 NC_015422.1 TIGRFAM: Acetoacetyl-CoA reductase; KEGG: ajs:Ajs_2072 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; acetoacetyl-CoA reductase 2563030 10483504 Alide2_2457 Alicycliphilus denitrificans K601 acetoacetyl-CoA reductase YP_004388332.1 2562293 D 596154 CDS YP_004388333.1 330825030 10483505 complement(2563459..2565387) 1 NC_015422.1 KEGG: ajs:Ajs_2071 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 2565387 10483505 Alide2_2458 Alicycliphilus denitrificans K601 ABC transporter YP_004388333.1 2563459 R 596154 CDS YP_004388334.1 330825031 10483506 complement(2565443..2566429) 1 NC_015422.1 KEGG: dac:Daci_3609 hypothetical protein; hypothetical protein 2566429 10483506 Alide2_2459 Alicycliphilus denitrificans K601 hypothetical protein YP_004388334.1 2565443 R 596154 CDS YP_004388335.1 330825032 10483507 complement(2566487..2567716) 1 NC_015422.1 KEGG: dac:Daci_3610 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 2567716 10483507 Alide2_2460 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004388335.1 2566487 R 596154 CDS YP_004388336.1 330825033 10483508 complement(2567718..2569298) 1 NC_015422.1 KEGG: dac:Daci_3611 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 2569298 10483508 Alide2_2461 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004388336.1 2567718 R 596154 CDS YP_004388337.1 330825034 10483509 complement(2569403..2570407) 1 NC_015422.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: dac:Daci_3612 LysR family transcriptional regulator; LysR family transcriptional regulator 2570407 10483509 Alide2_2462 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388337.1 2569403 R 596154 CDS YP_004388338.1 330825035 10483510 complement(2570409..2571332) 1 NC_015422.1 TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; KEGG: ajs:Ajs_2070 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; PFAM: Methyltransferase small; protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 2571332 10483510 Alide2_2463 Alicycliphilus denitrificans K601 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific YP_004388338.1 2570409 R 596154 CDS YP_004388339.1 330825036 10483511 complement(2571329..2572507) 1 NC_015422.1 KEGG: ajs:Ajs_2069 succinyl-diaminopimelate desuccinylase; TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; PFAM: Peptidase M20; Peptidase M20, dimerisation; succinyl-diaminopimelate desuccinylase 2572507 10483511 Alide2_2464 Alicycliphilus denitrificans K601 succinyl-diaminopimelate desuccinylase YP_004388339.1 2571329 R 596154 CDS YP_004388340.1 330825037 10483512 complement(2572531..2573694) 1 NC_015422.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: dia:Dtpsy_1891 twitching motility protein; SMART: ATPase, AAA+ type, core; twitching motility protein 2573694 10483512 Alide2_2465 Alicycliphilus denitrificans K601 twitching motility protein YP_004388340.1 2572531 R 596154 CDS YP_004388341.1 330825038 10483513 complement(2573757..2574581) 1 NC_015422.1 KEGG: dia:Dtpsy_1890 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 2574581 10483513 Alide2_2466 Alicycliphilus denitrificans K601 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_004388341.1 2573757 R 596154 CDS YP_004388342.1 330825039 10483514 complement(2574589..2575791) 1 NC_015422.1 TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; KEGG: dia:Dtpsy_1889 succinyldiaminopimelate transaminase; PFAM: Aminotransferase, class I/classII; succinyldiaminopimelate transaminase 2575791 10483514 Alide2_2467 Alicycliphilus denitrificans K601 succinyldiaminopimelate transaminase YP_004388342.1 2574589 R 596154 CDS YP_004388343.1 330825040 10483515 complement(2575883..2576566) 1 NC_015422.1 KEGG: dia:Dtpsy_1887 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: Electron transport complex, RnfB; PFAM: Putative Fe-S cluster; 4Fe-4S binding domain; RnfABCDGE type electron transport complex subunit B 2576566 10483515 Alide2_2468 Alicycliphilus denitrificans K601 RnfABCDGE type electron transport complex subunit B YP_004388343.1 2575883 R 596154 CDS YP_004388344.1 330825041 10483516 complement(2576582..2577898) 1 NC_015422.1 KEGG: ajs:Ajs_2063 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: Polyhydroxyalkanoate depolymerase; PFAM: PHB de-polymerase, C-terminal; polyhydroxyalkanoate depolymerase 2577898 10483516 Alide2_2469 Alicycliphilus denitrificans K601 polyhydroxyalkanoate depolymerase YP_004388344.1 2576582 R 596154 CDS YP_004388345.1 330825042 10483517 complement(2578074..2579132) 1 NC_015422.1 KEGG: dia:Dtpsy_1885 RelA/SpoT domain protein; PFAM: RelA/SpoT; SMART: RelA/SpoT; RelA/SpoT domain-containing protein 2579132 10483517 Alide2_2470 Alicycliphilus denitrificans K601 RelA/SpoT domain-containing protein YP_004388345.1 2578074 R 596154 CDS YP_004388346.1 330825043 10483518 complement(2579199..2580149) 1 NC_015422.1 KEGG: dia:Dtpsy_1883 tRNA-dihydrouridine synthase A; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, YjbN; PFAM: tRNA-dihydrouridine synthase; yjbN family TIM-barrel protein 2580149 10483518 Alide2_2471 Alicycliphilus denitrificans K601 yjbN family TIM-barrel protein YP_004388346.1 2579199 R 596154 CDS YP_004388347.1 330825044 10483519 2580434..2580895 1 NC_015422.1 PFAM: MaoC-like dehydratase; KEGG: pde:Pden_4680 dehydratase; MaoC domain-containing protein dehydratase 2580895 10483519 Alide2_2472 Alicycliphilus denitrificans K601 MaoC domain-containing protein dehydratase YP_004388347.1 2580434 D 596154 CDS YP_004388348.1 330825045 10483520 2580899..2581507 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pde:Pden_4681 TetR family transcriptional regulator; TetR family transcriptional regulator 2581507 10483520 Alide2_2473 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004388348.1 2580899 D 596154 CDS YP_004388349.1 330825046 10483521 2581696..2582820 1 NC_015422.1 PFAM: Saccharopine dehydrogenase / Homospermidine synthase; KEGG: dia:Dtpsy_1846 saccharopine dehydrogenase; saccharopine dehydrogenase 2582820 10483521 Alide2_2474 Alicycliphilus denitrificans K601 saccharopine dehydrogenase YP_004388349.1 2581696 D 596154 CDS YP_004388350.1 330825047 10483522 complement(2582817..2584652) 1 NC_015422.1 KEGG: dia:Dtpsy_1847 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 2584652 10483522 Alide2_2475 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004388350.1 2582817 R 596154 CDS YP_004388351.1 330825048 10483523 complement(2584779..2585414) 1 NC_015422.1 KEGG: dia:Dtpsy_1848 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 2585414 10483523 Alide2_2476 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004388351.1 2584779 R 596154 CDS YP_004388352.1 330825049 10483524 complement(2585428..2586360) 1 NC_015422.1 KEGG: axy:AXYL_01256 3-hydroxy-3-methylglutaryl-CoA lyase 1; PFAM: Pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase 2586360 10483524 Alide2_2477 Alicycliphilus denitrificans K601 hydroxymethylglutaryl-CoA lyase YP_004388352.1 2585428 R 596154 CDS YP_004388353.1 330825050 10483525 complement(2586363..2587328) 1 NC_015422.1 KEGG: axy:AXYL_01255 extra-cytoplasmic solute receptor family protein 24; extra-cytoplasmic solute receptor family protein 2587328 10483525 Alide2_2478 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor family protein YP_004388353.1 2586363 R 596154 CDS YP_004388354.1 330825051 10483526 complement(2587366..2588589) 1 NC_015422.1 KEGG: axy:AXYL_01254 CoA-transferase family III family protein 9; PFAM: CoA-transferase family III; formyl-CoA transferase 2588589 10483526 Alide2_2479 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004388354.1 2587366 R 596154 CDS YP_004388355.1 330825052 10483527 complement(2588693..2590129) 1 NC_015422.1 KEGG: rpt:Rpal_2644 transcriptional regulator, XRE family; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Helix-turn-helix type 3; Protein of unknown function DUF955; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator 2590129 10483527 Alide2_2480 Alicycliphilus denitrificans K601 XRE family transcriptional regulator YP_004388355.1 2588693 R 596154 CDS YP_004388356.1 330825053 10483528 2590260..2592401 1 NC_015422.1 TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: dia:Dtpsy_1849 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; methylmalonyl-CoA mutase large subunit 2592401 10483528 Alide2_2481 Alicycliphilus denitrificans K601 methylmalonyl-CoA mutase large subunit YP_004388356.1 2590260 D 596154 CDS YP_004388357.1 330825054 10483529 2592418..2593425 1 NC_015422.1 KEGG: xtr:100495832 uncharacterized protein CC_2483-like; TIGRFAM: ArgK protein; PFAM: ArgK protein; LAO/AO transport system ATPase 2593425 10483529 Alide2_2482 Alicycliphilus denitrificans K601 LAO/AO transport system ATPase YP_004388357.1 2592418 D 596154 CDS YP_004388358.1 330825055 10483530 2593482..2595014 1 NC_015422.1 KEGG: ajs:Ajs_2042 carboxyl transferase; PFAM: Carboxyl transferase; propionyl-CoA carboxylase 2595014 10483530 Alide2_2483 Alicycliphilus denitrificans K601 propionyl-CoA carboxylase YP_004388358.1 2593482 D 596154 CDS YP_004388359.1 330825056 10483531 2595172..2597220 1 NC_015422.1 SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: dia:Dtpsy_1853 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; acetyl-CoA carboxylase, biotin carboxylase 2597220 10483531 Alide2_2484 Alicycliphilus denitrificans K601 acetyl-CoA carboxylase, biotin carboxylase YP_004388359.1 2595172 D 596154 CDS YP_004388360.1 330825057 10483532 2597279..2597740 1 NC_015422.1 KEGG: dia:Dtpsy_1854 lactoylglutathione lyase; lactoylglutathione lyase 2597740 10483532 Alide2_2485 Alicycliphilus denitrificans K601 lactoylglutathione lyase YP_004388360.1 2597279 D 596154 CDS YP_004388361.1 330825058 10483533 2598107..2599180 1 NC_015422.1 KEGG: ajs:Ajs_2045 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; TIGRFAM: Biotin synthase; HAMAP: Biotin synthase; SMART: Biotin/thiamin synthesis-associated protein; Elongator protein 3/MiaB/NifB; biotin synthase 2599180 10483533 Alide2_2486 Alicycliphilus denitrificans K601 biotin synthase YP_004388361.1 2598107 D 596154 CDS YP_004388362.1 330825059 10483534 complement(2599264..2600271) 1 NC_015422.1 KEGG: pol:Bpro_1449 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 2600271 10483534 Alide2_2487 Alicycliphilus denitrificans K601 twin-arginine translocation pathway signal protein YP_004388362.1 2599264 R 596154 CDS YP_004388363.1 330825060 10483535 2600393..2601073 1 NC_015422.1 KEGG: pol:Bpro_1450 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 2601073 10483535 Alide2_2488 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004388363.1 2600393 D 596154 CDS YP_004388364.1 330825061 10483536 2601039..2602427 1 NC_015422.1 KEGG: pol:Bpro_1451 histidine kinase; PFAM: Two-component sensor kinase N-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 2602427 10483536 Alide2_2489 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004388364.1 2601039 D 596154 CDS YP_004388365.1 330825062 10483537 2602424..2603395 1 NC_015422.1 KEGG: pol:Bpro_1452 hypothetical protein; hypothetical protein 2603395 10483537 Alide2_2490 Alicycliphilus denitrificans K601 hypothetical protein YP_004388365.1 2602424 D 596154 CDS YP_004388366.1 330825063 10483538 complement(2603399..2603845) 1 NC_015422.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: pna:Pnap_2833 OsmC family protein; OsmC family protein 2603845 10483538 Alide2_2491 Alicycliphilus denitrificans K601 OsmC family protein YP_004388366.1 2603399 R 596154 CDS YP_004388367.1 330825064 10483539 complement(2603842..2604135) 1 NC_015422.1 KEGG: pna:Pnap_2832 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein 2604135 10483539 Alide2_2492 Alicycliphilus denitrificans K601 rhodanese-like protein YP_004388367.1 2603842 R 596154 CDS YP_004388368.1 330825065 10483540 complement(2604233..2604442) 1 NC_015422.1 KEGG: pna:Pnap_2829 hypothetical protein; hypothetical protein 2604442 10483540 Alide2_2493 Alicycliphilus denitrificans K601 hypothetical protein YP_004388368.1 2604233 R 596154 CDS YP_004388369.1 330825066 10483541 complement(2604476..2605612) 1 NC_015422.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: alv:Alvin_1195 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2605612 10483541 Alide2_2494 Alicycliphilus denitrificans K601 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004388369.1 2604476 R 596154 CDS YP_004388370.1 330825067 10483542 complement(2605609..2606901) 1 NC_015422.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pna:Pnap_2831 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2606901 10483542 Alide2_2495 Alicycliphilus denitrificans K601 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004388370.1 2605609 R 596154 CDS YP_004388371.1 330825068 10483543 complement(2606944..2608365) 1 NC_015422.1 PFAM: Outer membrane efflux protein; KEGG: pna:Pnap_2830 TolC family type I secretion outer membrane protein; outer membrane efflux protein 2608365 10483543 Alide2_2496 Alicycliphilus denitrificans K601 outer membrane efflux protein YP_004388371.1 2606944 R 596154 CDS YP_004388372.1 330825069 10483544 complement(2608362..2611595) 1 NC_015422.1 PFAM: Acriflavin resistance protein; KEGG: pna:Pnap_2828 acriflavin resistance protein; acriflavin resistance protein 2611595 10483544 Alide2_2497 Alicycliphilus denitrificans K601 acriflavin resistance protein YP_004388372.1 2608362 R 596154 CDS YP_004388373.1 330825070 10483545 complement(2611597..2612637) 1 NC_015422.1 KEGG: pna:Pnap_2827 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 2612637 10483545 Alide2_2498 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004388373.1 2611597 R 596154 CDS YP_004388374.1 330825071 10483546 2612737..2613075 1 NC_015422.1 KEGG: pna:Pnap_2826 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR 2613075 10483546 Alide2_2499 Alicycliphilus denitrificans K601 regulatory protein ArsR YP_004388374.1 2612737 D 596154 CDS YP_004388375.1 330825072 10483548 complement(2613477..2614262) 1 NC_015422.1 KEGG: tjr:TherJR_2256 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain; 4-hydroxy-2-oxovalerate aldolase 2614262 10483548 Alide2_2501 Alicycliphilus denitrificans K601 4-hydroxy-2-oxovalerate aldolase YP_004388375.1 2613477 R 596154 CDS YP_004388376.1 330825073 10483549 complement(2614298..2614996) 1 NC_015422.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: rpa:RPA2008 hypothetical protein; dimethylmenaquinone methyltransferase 2614996 10483549 Alide2_2502 Alicycliphilus denitrificans K601 dimethylmenaquinone methyltransferase YP_004388376.1 2614298 R 596154 CDS YP_004388377.1 330825074 10483550 complement(2615006..2616022) 1 NC_015422.1 KEGG: axy:AXYL_04163 extra-cytoplasmic solute receptor family protein 99; extra-cytoplasmic solute receptor family protein 2616022 10483550 Alide2_2503 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor family protein YP_004388377.1 2615006 R 596154 CDS YP_004388378.1 330825075 10483551 complement(2616047..2617039) 1 NC_015422.1 KEGG: bpt:Bpet3225 putative secreted protein; hypothetical protein 2617039 10483551 Alide2_2504 Alicycliphilus denitrificans K601 hypothetical protein YP_004388378.1 2616047 R 596154 CDS YP_004388379.1 330825076 10483552 complement(2617054..2618094) 1 NC_015422.1 KEGG: bxe:Bxe_C0307 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; lacI family transcriptional regulator 2618094 10483552 Alide2_2505 Alicycliphilus denitrificans K601 lacI family transcriptional regulator YP_004388379.1 2617054 R 596154 CDS YP_004388380.1 330825077 10483553 complement(2618091..2618852) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0308 putative short-chain dehydrogenase/reductase; SMART: Polyketide synthase/Fatty acid synthase, KR; 3-oxoacyl-ACP reductase 2618852 10483553 Alide2_2506 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004388380.1 2618091 R 596154 CDS YP_004388381.1 330825078 10483554 complement(2618855..2620174) 1 NC_015422.1 PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: xtr:100486926 histidinol dehydrogenase 2-like; histidinol dehydrogenase 2620174 10483554 Alide2_2507 Alicycliphilus denitrificans K601 histidinol dehydrogenase YP_004388381.1 2618855 R 596154 CDS YP_004388382.1 330825079 10483555 2620401..2621006 1 NC_015422.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2324 methyltransferase type 11; type 11 methyltransferase 2621006 10483555 Alide2_2508 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004388382.1 2620401 D 596154 CDS YP_004388383.1 330825080 10483556 2621017..2621685 1 NC_015422.1 PFAM: DTW; KEGG: dia:Dtpsy_1758 DTW domain containing protein; DTW domain-containing protein 2621685 10483556 Alide2_2509 Alicycliphilus denitrificans K601 DTW domain-containing protein YP_004388383.1 2621017 D 596154 CDS YP_004388384.1 330825081 10483557 2621702..2622283 1 NC_015422.1 KEGG: dia:Dtpsy_1757 uncharacterized peroxidase-related enzyme; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 2622283 10483557 Alide2_2510 Alicycliphilus denitrificans K601 peroxidase-like protein YP_004388384.1 2621702 D 596154 CDS YP_004388385.1 330825082 10483558 complement(2622348..2624084) 1 NC_015422.1 PFAM: Sulfatase; Domain of unknown function DUF1705; KEGG: ajs:Ajs_1955 sulfatase; sulfatase 2624084 10483558 Alide2_2511 Alicycliphilus denitrificans K601 sulfatase YP_004388385.1 2622348 R 596154 CDS YP_004388386.1 330825083 10483559 complement(2624089..2624817) 1 NC_015422.1 KEGG: dia:Dtpsy_1755 PAP2 (acid phosphatase) superfamily protein-like protein; PAP2 (acid phosphatase) superfamily protein-like protein 2624817 10483559 Alide2_2512 Alicycliphilus denitrificans K601 PAP2 (acid phosphatase) superfamily protein-like protein YP_004388386.1 2624089 R 596154 CDS YP_004388387.1 330825084 10483560 2624951..2625625 1 NC_015422.1 KEGG: dia:Dtpsy_1754 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 2625625 10483560 Alide2_2513 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004388387.1 2624951 D 596154 CDS YP_004388388.1 330825085 10483561 2625629..2626996 1 NC_015422.1 KEGG: dia:Dtpsy_1753 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 2626996 10483561 Alide2_2514 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004388388.1 2625629 D 596154 CDS YP_004388389.1 330825086 10483562 complement(2627012..2627782) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: bbr:BB4306 putative enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 2627782 10483562 Alide2_2515 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004388389.1 2627012 R 596154 CDS YP_004388390.1 330825087 10483563 complement(2627787..2628749) 1 NC_015422.1 KEGG: xtr:100486988 UPF0065 protein in tcbD-tcbE intergenic region-like; hypothetical protein 2628749 10483563 Alide2_2516 Alicycliphilus denitrificans K601 hypothetical protein YP_004388390.1 2627787 R 596154 CDS YP_004388391.1 330825088 10483564 complement(2628791..2629798) 1 NC_015422.1 KEGG: bbr:BB4304 putative zinc-binding dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; NADPH:quinone reductase 2629798 10483564 Alide2_2517 Alicycliphilus denitrificans K601 NADPH:quinone reductase YP_004388391.1 2628791 R 596154 CDS YP_004388392.1 330825089 10483565 complement(2629798..2631015) 1 NC_015422.1 KEGG: bbr:BB4303 putative racemase; PFAM: CoA-transferase family III; formyl-CoA transferase 2631015 10483565 Alide2_2518 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004388392.1 2629798 R 596154 CDS YP_004388393.1 330825090 10483566 2631153..2632322 1 NC_015422.1 KEGG: xtr:100487140 short-chain specific acyl-CoA dehydrogenase, mitochondrial-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 2632322 10483566 Alide2_2519 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004388393.1 2631153 D 596154 CDS YP_004388394.1 330825091 10483567 2632339..2633394 1 NC_015422.1 KEGG: bbr:BB1197 hypothetical protein; hypothetical protein 2633394 10483567 Alide2_2520 Alicycliphilus denitrificans K601 hypothetical protein YP_004388394.1 2632339 D 596154 CDS YP_004388395.1 330825092 10483568 2633412..2634548 1 NC_015422.1 KEGG: cti:RALTA_B0352 putative acyl-CoA transferases/carnitine dehydratase; PFAM: CoA-transferase family III; formyl-CoA transferase 2634548 10483568 Alide2_2521 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004388395.1 2633412 D 596154 CDS YP_004388396.1 330825093 10483569 2634700..2635341 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bbr:BB4302 TetR family transcriptional regulator; TetR family transcriptional regulator 2635341 10483569 Alide2_2522 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004388396.1 2634700 D 596154 CDS YP_004388397.1 330825094 10483570 2635491..2637206 1 NC_015422.1 KEGG: xtr:100487291 electron transfer flavoprotein-ubiquinone oxidoreductase-like; PFAM: Electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2637206 10483570 Alide2_2523 Alicycliphilus denitrificans K601 electron-transferring-flavoprotein dehydrogenase YP_004388397.1 2635491 D 596154 CDS YP_004388398.1 330825095 10483571 2637445..2638413 1 NC_015422.1 PFAM: ABC transporter substrate binding protein; KEGG: ajs:Ajs_1949 hypothetical protein; ABC transporter substrate-binding protein 2638413 10483571 Alide2_2524 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004388398.1 2637445 D 596154 CDS YP_004388399.1 330825096 10483572 2638495..2639382 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dac:Daci_4312 inner-membrane translocator; ABC transporter permease 2639382 10483572 Alide2_2525 Alicycliphilus denitrificans K601 ABC transporter permease YP_004388399.1 2638495 D 596154 CDS YP_004388400.1 330825097 10483573 2639395..2640189 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1748 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 2640189 10483573 Alide2_2526 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004388400.1 2639395 D 596154 CDS YP_004388401.1 330825098 10483574 complement(2640364..2642289) 1 NC_015422.1 KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS; Fis family sigma-54 specific transcriptional regulator with PAS/PAC sensor 2642289 10483574 Alide2_2527 Alicycliphilus denitrificans K601 Fis family sigma-54 specific transcriptional regulator with PAS/PAC sensor YP_004388401.1 2640364 R 596154 CDS YP_004388402.1 330825099 10483575 complement(2642401..2643276) 1 NC_015422.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: vap:Vapar_5337 alpha/beta hydrolase fold protein; alpha/beta fold family hydrolase 2643276 10483575 Alide2_2528 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004388402.1 2642401 R 596154 CDS YP_004388403.1 330825100 10483576 complement(2643290..2644870) 1 NC_015422.1 KEGG: azo:azo3873 putative glucase dehydrogenase subunit alpha; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; gluconate 2-dehydrogenase 2644870 10483576 Alide2_2529 Alicycliphilus denitrificans K601 gluconate 2-dehydrogenase YP_004388403.1 2643290 R 596154 CDS YP_004388404.1 330825101 10483577 complement(2644903..2645484) 1 NC_015422.1 KEGG: azo:azo3872 hypothetical protein; hypothetical protein 2645484 10483577 Alide2_2530 Alicycliphilus denitrificans K601 hypothetical protein YP_004388404.1 2644903 R 596154 CDS YP_004388405.1 330825102 10483578 complement(2645541..2646254) 1 NC_015422.1 PFAM: Biotin/lipoate A/B protein ligase; KEGG: azo:azo3871 putative lipoate protein ligase; biotin/lipoate A/B protein ligase 2646254 10483578 Alide2_2531 Alicycliphilus denitrificans K601 biotin/lipoate A/B protein ligase YP_004388405.1 2645541 R 596154 CDS YP_004388406.1 330825103 10483579 complement(2646251..2646964) 1 NC_015422.1 KEGG: azo:azo3870 hypothetical protein; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; dihydrolipoyllysine-residue acetyltransferase 2646964 10483579 Alide2_2532 Alicycliphilus denitrificans K601 dihydrolipoyllysine-residue acetyltransferase YP_004388406.1 2646251 R 596154 CDS YP_004388407.1 330825104 10483580 complement(2646961..2647206) 1 NC_015422.1 PFAM: Biotin/lipoyl attachment; KEGG: rfr:Rfer_3967 biotin/lipoyl attachment; biotin/lipoyl attachment domain-containing protein 2647206 10483580 Alide2_2533 Alicycliphilus denitrificans K601 biotin/lipoyl attachment domain-containing protein YP_004388407.1 2646961 R 596154 CDS YP_004388408.1 330825105 10483581 complement(2647203..2648240) 1 NC_015422.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: rfr:Rfer_3966 transketolase; SMART: Transketolase-like, pyrimidine-binding domain; pyruvate dehydrogenase 2648240 10483581 Alide2_2534 Alicycliphilus denitrificans K601 pyruvate dehydrogenase YP_004388408.1 2647203 R 596154 CDS YP_004388409.1 330825106 10483582 complement(2648266..2649273) 1 NC_015422.1 KEGG: azo:azo3867 acetoin dehydrogenase subunit alpha; PFAM: Dehydrogenase, E1 component; pyruvate dehydrogenase 2649273 10483582 Alide2_2535 Alicycliphilus denitrificans K601 pyruvate dehydrogenase YP_004388409.1 2648266 R 596154 CDS YP_004388410.1 330825107 10483583 complement(2649609..2650070) 1 NC_015422.1 KEGG: dia:Dtpsy_1745 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator 2650070 10483583 Alide2_2536 Alicycliphilus denitrificans K601 AsnC family transcriptional regulator YP_004388410.1 2649609 R 596154 CDS YP_004388411.1 330825108 10483584 2650356..2651327 1 NC_015422.1 KEGG: ajs:Ajs_1941 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; TRAP dicarboxylate transporter subunit DctP 2651327 10483584 Alide2_2537 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctP YP_004388411.1 2650356 D 596154 CDS YP_004388412.1 330825109 10483585 2651403..2651897 1 NC_015422.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dia:Dtpsy_1743 tripartite ATP-independent periplasmic transporter DctQ component; TRAP dicarboxylate transporter subunit DctQ 2651897 10483585 Alide2_2538 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctQ YP_004388412.1 2651403 D 596154 CDS YP_004388413.1 330825110 10483586 2651894..2653171 1 NC_015422.1 KEGG: dia:Dtpsy_1742 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 2653171 10483586 Alide2_2539 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctM YP_004388413.1 2651894 D 596154 CDS YP_004388414.1 330825111 10483587 complement(2653190..2654257) 1 NC_015422.1 KEGG: bpt:Bpet1117 metallo-beta-lactamase family protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 2654257 10483587 Alide2_2540 Alicycliphilus denitrificans K601 beta-lactamase domain-containing protein YP_004388414.1 2653190 R 596154 CDS YP_004388415.1 330825112 10483588 2654558..2655721 1 NC_015422.1 TIGRFAM: Glycine cleavage system T protein; KEGG: xtr:100488488 hypothetical protein LOC100488488; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; glycine cleavage system T protein 2655721 10483588 Alide2_2541 Alicycliphilus denitrificans K601 glycine cleavage system T protein YP_004388415.1 2654558 D 596154 CDS YP_004388416.1 330825113 10483589 2655808..2656182 1 NC_015422.1 KEGG: xtr:100488332 glycine cleavage system H protein-like; TIGRFAM: Glycine cleavage H-protein, subgroup; PFAM: Glycine cleavage H-protein; glycine cleavage system H protein 2656182 10483589 Alide2_2542 Alicycliphilus denitrificans K601 glycine cleavage system H protein YP_004388416.1 2655808 D 596154 CDS YP_004388417.1 330825114 10483590 2656311..2659199 1 NC_015422.1 TIGRFAM: Glycine cleavage system P protein, homodimeric; HAMAP: Glycine cleavage system P protein, homodimeric; KEGG: dia:Dtpsy_1739 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; glycine dehydrogenase 2659199 10483590 Alide2_2543 Alicycliphilus denitrificans K601 glycine dehydrogenase YP_004388417.1 2656311 D 596154 CDS YP_004388418.1 330825115 10483591 2659358..2659618 1 NC_015422.1 PFAM: Protein of unknown function DUF156; KEGG: ajs:Ajs_2799 hypothetical protein; hypothetical protein 2659618 10483591 Alide2_2544 Alicycliphilus denitrificans K601 hypothetical protein YP_004388418.1 2659358 D 596154 CDS YP_004388419.1 330825116 10483592 2659642..2660757 1 NC_015422.1 KEGG: dia:Dtpsy_2290 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2660757 10483592 Alide2_2545 Alicycliphilus denitrificans K601 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_004388419.1 2659642 D 596154 CDS YP_004388420.1 330825117 10483593 2660867..2661727 1 NC_015422.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: ajs:Ajs_2801 carboxylesterase; PFAM: Putative esterase; S-formylglutathione hydrolase 2661727 10483593 Alide2_2546 Alicycliphilus denitrificans K601 S-formylglutathione hydrolase YP_004388420.1 2660867 D 596154 CDS YP_004388421.1 330825118 10483594 complement(2661738..2661917) 1 NC_015422.1 hypothetical protein 2661917 10483594 Alide2_2547 Alicycliphilus denitrificans K601 hypothetical protein YP_004388421.1 2661738 R 596154 CDS YP_004388422.1 330825119 10483595 2661991..2662878 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_2228 transcriptional regulator, LysR family; LysR family transcriptional regulator 2662878 10483595 Alide2_2548 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388422.1 2661991 D 596154 CDS YP_004388423.1 330825120 10483596 complement(2662875..2663993) 1 NC_015422.1 KEGG: ajs:Ajs_2803 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 2663993 10483596 Alide2_2549 Alicycliphilus denitrificans K601 radical SAM protein YP_004388423.1 2662875 R 596154 CDS YP_004388424.1 330825121 10483597 2664269..2664676 1 NC_015422.1 PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: ajs:Ajs_2805 GreA/GreB family elongation factor; GreA/GreB family elongation factor 2664676 10483597 Alide2_2550 Alicycliphilus denitrificans K601 GreA/GreB family elongation factor YP_004388424.1 2664269 D 596154 CDS YP_004388425.1 330825122 10483598 complement(2664723..2665880) 1 NC_015422.1 PFAM: Acyltransferase 3; KEGG: dia:Dtpsy_2295 acyltransferase 3; acyltransferase 3 2665880 10483598 Alide2_2551 Alicycliphilus denitrificans K601 acyltransferase 3 YP_004388425.1 2664723 R 596154 CDS YP_004388426.1 330825123 10483599 complement(2665947..2666903) 1 NC_015422.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 2666903 10483599 Alide2_2552 Alicycliphilus denitrificans K601 2-nitropropane dioxygenase YP_004388426.1 2665947 R 596154 CDS YP_004388427.1 330825124 10483600 complement(2666982..2668772) 1 NC_015422.1 KEGG: dia:Dtpsy_2297 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA dehydrogenase, N-terminal, bacteria; butyryl-CoA dehydrogenase 2668772 10483600 Alide2_2553 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004388427.1 2666982 R 596154 CDS YP_004388428.1 330825125 10483601 complement(2668856..2669788) 1 NC_015422.1 KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha 2669788 10483601 Alide2_2554 Alicycliphilus denitrificans K601 electron transfer flavoprotein subunit alpha YP_004388428.1 2668856 R 596154 CDS YP_004388429.1 330825126 10483602 complement(2669806..2670555) 1 NC_015422.1 KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha/beta 2670555 10483602 Alide2_2555 Alicycliphilus denitrificans K601 electron transfer flavoprotein subunit alpha/beta YP_004388429.1 2669806 R 596154 CDS YP_004388430.1 330825127 10483603 complement(2670727..2671506) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: ajs:Ajs_2812 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 2671506 10483603 Alide2_2556 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004388430.1 2670727 R 596154 CDS YP_004388431.1 330825128 10483604 complement(2671521..2672480) 1 NC_015422.1 PFAM: Histone deacetylase superfamily; KEGG: ajs:Ajs_2813 histone deacetylase superfamily protein; histone deacetylase superfamily protein 2672480 10483604 Alide2_2557 Alicycliphilus denitrificans K601 histone deacetylase superfamily protein YP_004388431.1 2671521 R 596154 CDS YP_004388432.1 330825129 10483605 2672519..2673439 1 NC_015422.1 KEGG: dia:Dtpsy_2303 ATPase associated with various cellular activities AAA_3; PFAM: ATPase, AAA-3; SMART: ATPase, AAA+ type, core; ATPase 2673439 10483605 Alide2_2558 Alicycliphilus denitrificans K601 ATPase YP_004388432.1 2672519 D 596154 CDS YP_004388433.1 330825130 10483607 2674537..2676594 1 NC_015422.1 KEGG: ajs:Ajs_2816 transglutaminase domain-containing protein; PFAM: Protein of unknown function DUF3488; Transglutaminase-like; SMART: Transglutaminase-like; hypothetical protein 2676594 10483607 Alide2_2560 Alicycliphilus denitrificans K601 hypothetical protein YP_004388433.1 2674537 D 596154 CDS YP_004388434.1 330825131 10483608 2676591..2677661 1 NC_015422.1 TIGRFAM: Lytic transglycosylase MltB; KEGG: dia:Dtpsy_2306 lytic murein transglycosylase B; lytic murein transglycosylase B 2677661 10483608 Alide2_2561 Alicycliphilus denitrificans K601 lytic murein transglycosylase B YP_004388434.1 2676591 D 596154 CDS YP_004388435.1 330825132 10483609 complement(2677671..2678675) 1 NC_015422.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: lch:Lcho_4275 transketolase central region; SMART: Transketolase-like, pyrimidine-binding domain; 1-deoxy-D-xylulose-5-phosphate synthase 2678675 10483609 Alide2_2562 Alicycliphilus denitrificans K601 1-deoxy-D-xylulose-5-phosphate synthase YP_004388435.1 2677671 R 596154 CDS YP_004388436.1 330825133 10483610 complement(2678690..2679517) 1 NC_015422.1 KEGG: dac:Daci_0728 transketolase domain-containing protein; PFAM: Transketolase, N-terminal; transketolase 2679517 10483610 Alide2_2563 Alicycliphilus denitrificans K601 transketolase YP_004388436.1 2678690 R 596154 CDS YP_004388437.1 330825134 10483611 complement(2679540..2680799) 1 NC_015422.1 KEGG: pol:Bpro_1457 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 2680799 10483611 Alide2_2564 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctM YP_004388437.1 2679540 R 596154 CDS YP_004388438.1 330825135 10483612 complement(2680796..2681296) 1 NC_015422.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: lch:Lcho_0406 tripartite ATP-independent periplasmic transporter DctQ; TRAP dicarboxylate transporter subunit DctQ 2681296 10483612 Alide2_2565 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctQ YP_004388438.1 2680796 R 596154 CDS YP_004388439.1 330825136 10483613 complement(2681351..2682334) 1 NC_015422.1 KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; TRAP dicarboxylate transporter subunit DctP 2682334 10483613 Alide2_2566 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctP YP_004388439.1 2681351 R 596154 CDS YP_004388440.1 330825137 10483614 complement(2682371..2683120) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: lch:Lcho_0404 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; 3-oxoacyl-ACP reductase 2683120 10483614 Alide2_2567 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004388440.1 2682371 R 596154 CDS YP_004388441.1 330825138 10483615 2683261..2684139 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_1453 LysR family transcriptional regulator; LysR family transcriptional regulator 2684139 10483615 Alide2_2568 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388441.1 2683261 D 596154 CDS YP_004388442.1 330825139 10483616 2684292..2686274 1 NC_015422.1 SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: hse:Hsero_0506 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; transketolase 2686274 10483616 Alide2_2569 Alicycliphilus denitrificans K601 transketolase YP_004388442.1 2684292 D 596154 CDS YP_004388443.1 330825140 10483617 2686289..2687251 1 NC_015422.1 KEGG: bxe:Bxe_B0983 putative 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; glycerate dehydrogenase 2687251 10483617 Alide2_2570 Alicycliphilus denitrificans K601 glycerate dehydrogenase YP_004388443.1 2686289 D 596154 CDS YP_004388444.1 330825141 10483618 complement(2687271..2688185) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_2307 transcriptional regulator, LysR family; LysR family transcriptional regulator 2688185 10483618 Alide2_2571 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388444.1 2687271 R 596154 CDS YP_004388445.1 330825142 10483619 2688300..2689391 1 NC_015422.1 KEGG: dia:Dtpsy_2308 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0324, bacteria; PFAM: Uncharacterised protein family UPF0324, prokaryote; hypothetical protein 2689391 10483619 Alide2_2572 Alicycliphilus denitrificans K601 hypothetical protein YP_004388445.1 2688300 D 596154 CDS YP_004388446.1 330825143 10483620 complement(2689393..2690670) 1 NC_015422.1 KEGG: dia:Dtpsy_2309 putative transporter signal peptide protein; hypothetical protein 2690670 10483620 Alide2_2573 Alicycliphilus denitrificans K601 hypothetical protein YP_004388446.1 2689393 R 596154 CDS YP_004388447.1 330825144 10483621 complement(2690703..2691515) 1 NC_015422.1 PFAM: Protein of unknown function DUF2242; KEGG: dia:Dtpsy_2310 putative lipoprotein; hypothetical protein 2691515 10483621 Alide2_2574 Alicycliphilus denitrificans K601 hypothetical protein YP_004388447.1 2690703 R 596154 CDS YP_004388448.1 330825145 10483622 complement(2691634..2692845) 1 NC_015422.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2312 protein of unknown function DUF214; hypothetical protein 2692845 10483622 Alide2_2575 Alicycliphilus denitrificans K601 hypothetical protein YP_004388448.1 2691634 R 596154 CDS YP_004388449.1 330825146 10483623 complement(2692842..2693597) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2313 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 2693597 10483623 Alide2_2576 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004388449.1 2692842 R 596154 CDS YP_004388450.1 330825147 10483624 complement(2693594..2694943) 1 NC_015422.1 KEGG: dia:Dtpsy_2314 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 2694943 10483624 Alide2_2577 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004388450.1 2693594 R 596154 CDS YP_004388451.1 330825148 10483625 complement(2694940..2696346) 1 NC_015422.1 KEGG: dia:Dtpsy_2315 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 2696346 10483625 Alide2_2578 Alicycliphilus denitrificans K601 NodT family RND efflux system outer membrane lipoprotein YP_004388451.1 2694940 R 596154 CDS YP_004388452.1 330825149 10483626 complement(2696469..2697512) 1 NC_015422.1 TIGRFAM: Peptidase M22, glycoprotease, subgroup; Peptidase M22, O-sialoglycoprotein peptidase; KEGG: dia:Dtpsy_2317 putative DNA-binding/iron metalloprotein/AP endonuclease; PFAM: Peptidase M22, glycoprotease; glycoprotease family metalloendopeptidase 2697512 10483626 Alide2_2579 Alicycliphilus denitrificans K601 glycoprotease family metalloendopeptidase YP_004388452.1 2696469 R 596154 CDS YP_004388453.1 330825150 10483627 complement(2697535..2697972) 1 NC_015422.1 KEGG: dia:Dtpsy_2323 putative signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; signal transduction protein 2697972 10483627 Alide2_2580 Alicycliphilus denitrificans K601 signal transduction protein YP_004388453.1 2697535 R 596154 CDS YP_004388454.1 330825151 10483628 complement(2698057..2698698) 1 NC_015422.1 KEGG: dia:Dtpsy_2324 calcium-binding EF-hand-containing protein; calcium-binding EF-hand-containing protein 2698698 10483628 Alide2_2581 Alicycliphilus denitrificans K601 calcium-binding EF-hand-containing protein YP_004388454.1 2698057 R 596154 CDS YP_004388455.1 330825152 10483629 2699101..2700339 1 NC_015422.1 KEGG: aav:Aave_2112 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 2700339 10483629 Alide2_2582 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004388455.1 2699101 D 596154 CDS YP_004388456.1 330825153 10483630 2700349..2703492 1 NC_015422.1 KEGG: dia:Dtpsy_2326 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2703492 10483630 Alide2_2583 Alicycliphilus denitrificans K601 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_004388456.1 2700349 D 596154 CDS YP_004388457.1 330825154 10483631 2703489..2704997 1 NC_015422.1 KEGG: dia:Dtpsy_2327 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 2704997 10483631 Alide2_2584 Alicycliphilus denitrificans K601 NodT family RND efflux system outer membrane lipoprotein YP_004388457.1 2703489 D 596154 CDS YP_004388458.1 330825155 10483632 2705251..2707701 1 NC_015422.1 TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: ajs:Ajs_2839 assimilatory nitrite reductase (NAD(P)H) large subunit precursor; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; nitrite reductase (NAD(P)H) large subunit 2707701 10483632 Alide2_2585 Alicycliphilus denitrificans K601 nitrite reductase (NAD(P)H) large subunit YP_004388458.1 2705251 D 596154 CDS YP_004388459.1 330825156 10483633 2707774..2708151 1 NC_015422.1 KEGG: ajs:Ajs_2840 assimilatory nitrite reductase (NAD(P)H) small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain; nitrite reductase (NAD(P)H) small subunit 2708151 10483633 Alide2_2586 Alicycliphilus denitrificans K601 nitrite reductase (NAD(P)H) small subunit YP_004388459.1 2707774 D 596154 CDS YP_004388460.1 330825157 10483634 2708148..2710940 1 NC_015422.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; BFD-like [2Fe-2S]-binding domain; KEGG: ajs:Ajs_2841 assimilatory nitrate reductase (NADH) alpha subunit apoprotein; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; nitrate reductase 2710940 10483634 Alide2_2587 Alicycliphilus denitrificans K601 nitrate reductase YP_004388460.1 2708148 D 596154 CDS YP_004388461.1 330825158 10483635 2710991..2712214 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pol:Bpro_3273 major facilitator transporter; major facilitator superfamily protein 2712214 10483635 Alide2_2588 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004388461.1 2710991 D 596154 CDS YP_004388462.1 330825159 10483636 complement(2712254..2712829) 1 NC_015422.1 PFAM: SNARE associated Golgi protein; KEGG: net:Neut_2429 hypothetical protein; hypothetical protein 2712829 10483636 Alide2_2589 Alicycliphilus denitrificans K601 hypothetical protein YP_004388462.1 2712254 R 596154 CDS YP_004388463.1 330825160 10483637 2712965..2713933 1 NC_015422.1 PFAM: Glycosyl transferase, family 3, N-terminal; KEGG: ajs:Ajs_2842 glycosyl transferase family protein; glycosyl transferase family protein 2713933 10483637 Alide2_2590 Alicycliphilus denitrificans K601 glycosyl transferase family protein YP_004388463.1 2712965 D 596154 CDS YP_004388464.1 330825161 10483638 2713930..2714691 1 NC_015422.1 TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: ajs:Ajs_2843 uroporphyrinogen-III C-methyltransferase; PFAM: Tetrapyrrole methylase; uroporphyrin-III C-methyltransferase 2714691 10483638 Alide2_2591 Alicycliphilus denitrificans K601 uroporphyrin-III C-methyltransferase YP_004388464.1 2713930 D 596154 CDS YP_004388465.1 330825162 10483639 complement(2714692..2715201) 1 NC_015422.1 PFAM: Thioesterase superfamily; KEGG: dia:Dtpsy_2333 thioesterase superfamily protein; thioesterase superfamily protein 2715201 10483639 Alide2_2592 Alicycliphilus denitrificans K601 thioesterase superfamily protein YP_004388465.1 2714692 R 596154 CDS YP_004388466.1 330825163 10483640 2715266..2716507 1 NC_015422.1 KEGG: dia:Dtpsy_2335 HI0933 family protein; TIGRFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; hypothetical protein 2716507 10483640 Alide2_2593 Alicycliphilus denitrificans K601 hypothetical protein YP_004388466.1 2715266 D 596154 CDS YP_004388467.1 330825164 10483641 2716618..2717829 1 NC_015422.1 PFAM: NnrS; KEGG: ajs:Ajs_2847 NnrS family protein; NnrS family protein 2717829 10483641 Alide2_2594 Alicycliphilus denitrificans K601 NnrS family protein YP_004388467.1 2716618 D 596154 CDS YP_004388468.1 330825165 10483642 2717882..2718166 1 NC_015422.1 PFAM: Protein of unknown function DUF2249; KEGG: dia:Dtpsy_2337 hypothetical protein; hypothetical protein 2718166 10483642 Alide2_2595 Alicycliphilus denitrificans K601 hypothetical protein YP_004388468.1 2717882 D 596154 CDS YP_004388469.1 330825166 10483643 complement(2718236..2718790) 1 NC_015422.1 KEGG: dia:Dtpsy_2338 FeS assembly SUF system protein SufT; TIGRFAM: FeS assembly SUF system protein SufT, putative; PFAM: Domain of unknown function DUF59; FeS assembly SUF system protein SufT 2718790 10483643 Alide2_2596 Alicycliphilus denitrificans K601 FeS assembly SUF system protein SufT YP_004388469.1 2718236 R 596154 CDS YP_004388470.1 330825167 10483644 complement(2718787..2719251) 1 NC_015422.1 KEGG: dia:Dtpsy_2339 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS cluster assembly, SufU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; NifU family SUF system FeS assembly protein 2719251 10483644 Alide2_2597 Alicycliphilus denitrificans K601 NifU family SUF system FeS assembly protein YP_004388470.1 2718787 R 596154 CDS YP_004388471.1 330825168 10483645 complement(2719248..2720528) 1 NC_015422.1 TIGRFAM: Cysteine desulfurase, SufS; KEGG: ajs:Ajs_2851 aminotransferase, class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; SufS subfamily cysteine desulfurase 2720528 10483645 Alide2_2598 Alicycliphilus denitrificans K601 SufS subfamily cysteine desulfurase YP_004388471.1 2719248 R 596154 CDS YP_004388472.1 330825169 10483646 complement(2720521..2721756) 1 NC_015422.1 PFAM: SUF system FeS cluster assembly, SufBD; KEGG: ajs:Ajs_2852 SufBD protein; SufBD protein 2721756 10483646 Alide2_2599 Alicycliphilus denitrificans K601 SufBD protein YP_004388472.1 2720521 R 596154 CDS YP_004388473.1 330825170 10483647 complement(2721761..2722534) 1 NC_015422.1 TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2342 FeS assembly ATPase SufC; SMART: ATPase, AAA+ type, core; FeS assembly ATPase SufC 2722534 10483647 Alide2_2600 Alicycliphilus denitrificans K601 FeS assembly ATPase SufC YP_004388473.1 2721761 R 596154 CDS YP_004388474.1 330825171 10483648 complement(2722605..2724107) 1 NC_015422.1 KEGG: dia:Dtpsy_2343 cysteine desulfurase activator complex subunit SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD; FeS assembly protein SufB 2724107 10483648 Alide2_2601 Alicycliphilus denitrificans K601 FeS assembly protein SufB YP_004388474.1 2722605 R 596154 CDS YP_004388475.1 330825172 10483649 2724386..2724598 1 NC_015422.1 TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: vap:Vapar_3540 30S ribosomal protein S21; PFAM: Ribosomal protein S21; 30S ribosomal protein S21 2724598 10483649 Alide2_2602 Alicycliphilus denitrificans K601 30S ribosomal protein S21 YP_004388475.1 2724386 D 596154 CDS YP_004388476.1 330825173 10483650 2724684..2725130 1 NC_015422.1 KEGG: aav:Aave_2091 GatB/YqeY domain-containing protein; GatB/YqeY domain-containing protein 2725130 10483650 Alide2_2603 Alicycliphilus denitrificans K601 GatB/YqeY domain-containing protein YP_004388476.1 2724684 D 596154 CDS YP_004388477.1 330825174 10483651 complement(2725144..2726535) 1 NC_015422.1 PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: ajs:Ajs_1963 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2726535 10483651 Alide2_2604 Alicycliphilus denitrificans K601 metal dependent phosphohydrolase YP_004388477.1 2725144 R 596154 CDS YP_004388478.1 330825175 10483652 complement(2726686..2727324) 1 NC_015422.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: dia:Dtpsy_1763 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2727324 10483652 Alide2_2605 Alicycliphilus denitrificans K601 3-oxoacid CoA-transferase subunit B YP_004388478.1 2726686 R 596154 CDS YP_004388479.1 330825176 10483653 complement(2727328..2728035) 1 NC_015422.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: pna:Pnap_2658 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2728035 10483653 Alide2_2606 Alicycliphilus denitrificans K601 3-oxoacid CoA-transferase subunit A YP_004388479.1 2727328 R 596154 CDS YP_004388480.1 330825177 10483654 2728119..2728664 1 NC_015422.1 TIGRFAM: PAS; PFAM: Transcription regulator LuxR, C-terminal; PAS fold; KEGG: dia:Dtpsy_1761 transcriptional regulator, LuxR family; SMART: Transcription regulator LuxR, C-terminal; PAS; LuxR family transcriptional regulator 2728664 10483654 Alide2_2607 Alicycliphilus denitrificans K601 LuxR family transcriptional regulator YP_004388480.1 2728119 D 596154 CDS YP_004388481.1 330825178 10483655 2728802..2730043 1 NC_015422.1 PFAM: Acyltransferase 3; KEGG: ajs:Ajs_2326 acyltransferase 3; acyltransferase 3 2730043 10483655 Alide2_2608 Alicycliphilus denitrificans K601 acyltransferase 3 YP_004388481.1 2728802 D 596154 CDS YP_004388482.1 330825179 10483656 2730270..2731616 1 NC_015422.1 KEGG: ajs:Ajs_2327 N-acetylglutamate synthase; TIGRFAM: Amino-acid N-acetyltransferase (ArgA); PFAM: Aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase (GNAT) domain; amino-acid N-acetyltransferase 2731616 10483656 Alide2_2609 Alicycliphilus denitrificans K601 amino-acid N-acetyltransferase YP_004388482.1 2730270 D 596154 CDS YP_004388483.1 330825180 10483657 2732094..2732441 1 NC_015422.1 PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_3393 endoribonuclease L-PSP; endoribonuclease L-PSP 2732441 10483657 Alide2_2610 Alicycliphilus denitrificans K601 endoribonuclease L-PSP YP_004388483.1 2732094 D 596154 CDS YP_004388484.1 330825181 10483658 2732468..2733712 1 NC_015422.1 KEGG: bam:Bamb_3394 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase 2733712 10483658 Alide2_2611 Alicycliphilus denitrificans K601 D-amino-acid dehydrogenase YP_004388484.1 2732468 D 596154 CDS YP_004388485.1 330825182 10483659 2733709..2734485 1 NC_015422.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: vei:Veis_4472 Asp/Glu racemase; Asp/Glu/hydantoin racemase 2734485 10483659 Alide2_2612 Alicycliphilus denitrificans K601 Asp/Glu/hydantoin racemase YP_004388485.1 2733709 D 596154 CDS YP_004388486.1 330825183 10483660 2734547..2735680 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_4471 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2735680 10483660 Alide2_2613 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004388486.1 2734547 D 596154 CDS YP_004388487.1 330825184 10483661 2735736..2736629 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: vei:Veis_4470 inner-membrane translocator; ABC transporter permease 2736629 10483661 Alide2_2614 Alicycliphilus denitrificans K601 ABC transporter permease YP_004388487.1 2735736 D 596154 CDS YP_004388488.1 330825185 10483662 2736622..2737509 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: vei:Veis_4469 inner-membrane translocator; ABC transporter permease 2737509 10483662 Alide2_2615 Alicycliphilus denitrificans K601 ABC transporter permease YP_004388488.1 2736622 D 596154 CDS YP_004388489.1 330825186 10483663 2737506..2738288 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: vei:Veis_4468 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 2738288 10483663 Alide2_2616 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004388489.1 2737506 D 596154 CDS YP_004388490.1 330825187 10483664 2738288..2739007 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: vei:Veis_4467 ABC transporter related; SMART: ATPase, AAA+ type, core; polyamine-transporting ATPase 2739007 10483664 Alide2_2617 Alicycliphilus denitrificans K601 polyamine-transporting ATPase YP_004388490.1 2738288 D 596154 CDS YP_004388491.1 330825188 10483665 2739031..2740152 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: bcm:Bcenmc03_6241 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2740152 10483665 Alide2_2618 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004388491.1 2739031 D 596154 CDS YP_004388492.1 330825189 10483666 complement(2740217..2741125) 1 NC_015422.1 KEGG: tbd:Tbd_1098 dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase 2741125 10483666 Alide2_2619 Alicycliphilus denitrificans K601 dihydrodipicolinate synthase YP_004388492.1 2740217 R 596154 CDS YP_004388493.1 330825190 10483667 complement(2741244..2744690) 1 NC_015422.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: xau:Xaut_0390 indolepyruvate ferredoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase 2744690 10483667 Alide2_2620 Alicycliphilus denitrificans K601 pyruvate/ketoisovalerate oxidoreductase YP_004388493.1 2741244 R 596154 CDS YP_004388494.1 330825191 10483668 2744907..2745689 1 NC_015422.1 KEGG: vei:Veis_4063 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 2745689 10483668 Alide2_2621 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004388494.1 2744907 D 596154 CDS YP_004388495.1 330825192 10483669 complement(2745717..2747342) 1 NC_015422.1 KEGG: dar:Daro_3357 hypothetical protein; PFAM: GAF; Metal-dependent phosphohydrolase, HD subdomain; SMART: GAF; Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase with GAF sensor 2747342 10483669 Alide2_2622 Alicycliphilus denitrificans K601 metal dependent phosphohydrolase with GAF sensor YP_004388495.1 2745717 R 596154 CDS YP_004388496.1 330825193 10483670 complement(2747458..2747967) 1 NC_015422.1 KEGG: dia:Dtpsy_1523 disulphide bond formation protein DsbB; HAMAP: Disulphide bond formation protein DsbB; PFAM: Disulphide bond formation protein DsbB/BdbC; disulfide bond formation protein B 2747967 10483670 Alide2_2623 Alicycliphilus denitrificans K601 disulfide bond formation protein B YP_004388496.1 2747458 R 596154 CDS YP_004388497.1 330825194 10483671 complement(2748029..2749156) 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Sulphate transport system permease protein 1; KEGG: dia:Dtpsy_1522 sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter-like; sulfate ABC transporter ATPase 2749156 10483671 Alide2_2624 Alicycliphilus denitrificans K601 sulfate ABC transporter ATPase YP_004388497.1 2748029 R 596154 CDS YP_004388498.1 330825195 10483672 complement(2749191..2750084) 1 NC_015422.1 KEGG: xtr:100493368 sulfate transport system permease protein cysW-like; TIGRFAM: Sulphate ABC transporter, permease protein CysW; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease 2750084 10483672 Alide2_2625 Alicycliphilus denitrificans K601 sulfate ABC transporter permease YP_004388498.1 2749191 R 596154 CDS YP_004388499.1 330825196 10483673 complement(2750081..2750947) 1 NC_015422.1 KEGG: xtr:100493198 probable sulfate transport system permease protein cysT-like; TIGRFAM: Sulphate ABC transporter, permease protein CysT; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease 2750947 10483673 Alide2_2626 Alicycliphilus denitrificans K601 sulfate ABC transporter permease YP_004388499.1 2750081 R 596154 CDS YP_004388500.1 330825197 10483674 complement(2750952..2751953) 1 NC_015422.1 KEGG: dia:Dtpsy_1519 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; sulfate ABC transporter substrate-binding protein 2751953 10483674 Alide2_2627 Alicycliphilus denitrificans K601 sulfate ABC transporter substrate-binding protein YP_004388500.1 2750952 R 596154 CDS YP_004388501.1 330825198 10483675 complement(2752062..2752652) 1 NC_015422.1 PFAM: Protein of unknown function DUF1234; KEGG: aav:Aave_2544 hypothetical protein; hypothetical protein 2752652 10483675 Alide2_2628 Alicycliphilus denitrificans K601 hypothetical protein YP_004388501.1 2752062 R 596154 CDS YP_004388502.1 330825199 10483676 complement(2752740..2753657) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1518 transcriptional regulator, LysR family; LysR family transcriptional regulator 2753657 10483676 Alide2_2629 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388502.1 2752740 R 596154 CDS YP_004388503.1 330825200 10483677 2753785..2754435 1 NC_015422.1 PFAM: Flavodoxin-like fold; KEGG: dia:Dtpsy_1517 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 2754435 10483677 Alide2_2630 Alicycliphilus denitrificans K601 NAD(P)H dehydrogenase (quinone) YP_004388503.1 2753785 D 596154 CDS YP_004388504.1 330825201 10483678 complement(2754493..2755089) 1 NC_015422.1 PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_1516 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2755089 10483678 Alide2_2631 Alicycliphilus denitrificans K601 NADPH-dependent FMN reductase YP_004388504.1 2754493 R 596154 CDS YP_004388505.1 330825202 10483679 complement(2755136..2755936) 1 NC_015422.1 KEGG: dia:Dtpsy_1515 lipoprotein, YaeC family; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein; lipoprotein 2755936 10483679 Alide2_2632 Alicycliphilus denitrificans K601 lipoprotein YP_004388505.1 2755136 R 596154 CDS YP_004388506.1 330825203 10483680 complement(2756042..2756707) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_1513 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 2756707 10483680 Alide2_2633 Alicycliphilus denitrificans K601 ABC transporter permease YP_004388506.1 2756042 R 596154 CDS YP_004388507.1 330825204 10483681 complement(2756707..2757750) 1 NC_015422.1 PFAM: ABC transporter-like; NIL domain; KEGG: dia:Dtpsy_1512 DL-methionine transporter ATP-binding subunit; SMART: NIL domain; ATPase, AAA+ type, core; phosphonate-transporting ATPase 2757750 10483681 Alide2_2634 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004388507.1 2756707 R 596154 CDS YP_004388508.1 330825205 10483682 complement(2757859..2758248) 1 NC_015422.1 PFAM: Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein; KEGG: ajs:Ajs_2347 membrane protein-like protein; eicosanoid and glutathione metabolism membrane-associated protein 2758248 10483682 Alide2_2635 Alicycliphilus denitrificans K601 eicosanoid and glutathione metabolism membrane-associated protein YP_004388508.1 2757859 R 596154 CDS YP_004388509.1 330825206 10483683 complement(2758259..2758849) 1 NC_015422.1 KEGG: dia:Dtpsy_1509 recombination protein RecR; TIGRFAM: RecR protein; SMART: Toprim domain; Helix-hairpin-helix DNA-binding motif, class 1; recombination protein RecR 2758849 10483683 Alide2_2636 Alicycliphilus denitrificans K601 recombination protein RecR YP_004388509.1 2758259 R 596154 CDS YP_004388510.1 330825207 10483684 complement(2758869..2759201) 1 NC_015422.1 KEGG: ctt:CtCNB1_1631 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0133; PFAM: Uncharacterised protein family UPF0133; hypothetical protein 2759201 10483684 Alide2_2637 Alicycliphilus denitrificans K601 hypothetical protein YP_004388510.1 2758869 R 596154 CDS YP_004388511.1 330825208 10483685 complement(2759233..2761089) 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA polymerase III, subunit gamma/ tau; KEGG: dia:Dtpsy_1507 DNA polymerase III, subunits gamma and tau; PFAM: DNA polymerase III, gamma subunit, domain III; ATPase, AAA-type, core; DNA polymerase III subunits gamma and tau 2761089 10483685 Alide2_2638 Alicycliphilus denitrificans K601 DNA polymerase III subunits gamma and tau YP_004388511.1 2759233 R 596154 CDS YP_004388512.1 330825209 10483687 complement(2761272..2762099) 1 NC_015422.1 KEGG: gpb:HDN1F_09840 molybdopterin-binding protein; TIGRFAM: Molybdenum-binding protein, N-terminal; Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, LysR; ModE family transcriptional regulator 2762099 10483687 Alide2_2639 Alicycliphilus denitrificans K601 ModE family transcriptional regulator YP_004388512.1 2761272 R 596154 CDS YP_004388513.1 330825210 10483688 complement(2762136..2762987) 1 NC_015422.1 TIGRFAM: Putative molybdenum utilization protein ModD; KEGG: cli:Clim_0375 ModD protein; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal; modD protein 2762987 10483688 Alide2_2640 Alicycliphilus denitrificans K601 modD protein YP_004388513.1 2762136 R 596154 CDS YP_004388514.1 330825211 10483689 complement(2762984..2763646) 1 NC_015422.1 KEGG: dac:Daci_3882 binding-protein-dependent transport systems inner membrane component; TIGRFAM: Molybdate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit 2763646 10483689 Alide2_2641 Alicycliphilus denitrificans K601 molybdate ABC transporter inner membrane subunit YP_004388514.1 2762984 R 596154 CDS YP_004388515.1 330825212 10483690 complement(2763647..2764363) 1 NC_015422.1 TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; KEGG: dac:Daci_3883 molybdenum ABC transporter periplasmic molybdate-binding protein; molybdenum ABC transporter substrate-binding protein 2764363 10483690 Alide2_2642 Alicycliphilus denitrificans K601 molybdenum ABC transporter substrate-binding protein YP_004388515.1 2763647 R 596154 CDS YP_004388516.1 330825213 10483691 complement(2764375..2765178) 1 NC_015422.1 PFAM: Protein of unknown function DUF364; KEGG: mta:Moth_1420 hypothetical protein; hypothetical protein 2765178 10483691 Alide2_2643 Alicycliphilus denitrificans K601 hypothetical protein YP_004388516.1 2764375 R 596154 CDS YP_004388517.1 330825214 10483692 complement(2765172..2765966) 1 NC_015422.1 PFAM: Methyltransferase type 11; KEGG: bpt:Bpet1277 hypothetical protein; type 11 methyltransferase 2765966 10483692 Alide2_2644 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004388517.1 2765172 R 596154 CDS YP_004388518.1 330825215 10483693 complement(2765963..2766724) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dac:Daci_4650 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; iron-chelate-transporting ATPase 2766724 10483693 Alide2_2645 Alicycliphilus denitrificans K601 iron-chelate-transporting ATPase YP_004388518.1 2765963 R 596154 CDS YP_004388519.1 330825216 10483694 complement(2766721..2767719) 1 NC_015422.1 PFAM: ABC transporter permease protein; KEGG: dac:Daci_4649 transport system permease; ABC transporter permease 2767719 10483694 Alide2_2646 Alicycliphilus denitrificans K601 ABC transporter permease YP_004388519.1 2766721 R 596154 CDS YP_004388520.1 330825217 10483695 complement(2767778..2768812) 1 NC_015422.1 PFAM: Periplasmic binding protein; KEGG: ctt:CtCNB1_0597 periplasmic binding protein; ABC transporter substrate-binding protein 2768812 10483695 Alide2_2647 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004388520.1 2767778 R 596154 CDS YP_004388521.1 330825218 10483696 complement(2768809..2769348) 1 NC_015422.1 PFAM: Protein of unknown function DUF2478; KEGG: bpt:Bpet1276 hypothetical protein; hypothetical protein 2769348 10483696 Alide2_2648 Alicycliphilus denitrificans K601 hypothetical protein YP_004388521.1 2768809 R 596154 CDS YP_004388522.1 330825219 10483697 complement(2769428..2771407) 1 NC_015422.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: ctt:CtCNB1_0594 TonB-dependent receptor; TonB-dependent receptor plug 2771407 10483697 Alide2_2649 Alicycliphilus denitrificans K601 TonB-dependent receptor plug YP_004388522.1 2769428 R 596154 CDS YP_004388523.1 330825220 10483698 2771696..2772286 1 NC_015422.1 KEGG: dia:Dtpsy_1506 hypothetical protein; hypothetical protein 2772286 10483698 Alide2_2650 Alicycliphilus denitrificans K601 hypothetical protein YP_004388523.1 2771696 D 596154 CDS YP_004388524.1 330825221 10483699 complement(2772268..2773644) 1 NC_015422.1 KEGG: dia:Dtpsy_1505 HI0933 family protein; TIGRFAM: Conserved hyptotheical protein CHP03862, flavoprotein, PP4765; Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; hypothetical protein 2773644 10483699 Alide2_2651 Alicycliphilus denitrificans K601 hypothetical protein YP_004388524.1 2772268 R 596154 CDS YP_004388525.1 330825222 10483700 2773885..2774769 1 NC_015422.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: bpe:BP2937 hypothetical protein; Pirin domain-containing protein 2774769 10483700 Alide2_2652 Alicycliphilus denitrificans K601 Pirin domain-containing protein YP_004388525.1 2773885 D 596154 CDS YP_004388526.1 330825223 10483701 2774855..2775736 1 NC_015422.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: pag:PLES_41041 putative pirin protein; Pirin domain-containing protein 2775736 10483701 Alide2_2653 Alicycliphilus denitrificans K601 Pirin domain-containing protein YP_004388526.1 2774855 D 596154 CDS YP_004388527.1 330825224 10483702 complement(2775743..2779030) 1 NC_015422.1 PFAM: DNA helicase, UvrD/REP type; KEGG: dia:Dtpsy_1503 UvrD/REP helicase; UvrD/REP helicase 2779030 10483702 Alide2_2654 Alicycliphilus denitrificans K601 UvrD/REP helicase YP_004388527.1 2775743 R 596154 CDS YP_004388528.1 330825225 10483703 complement(2779023..2781590) 1 NC_015422.1 KEGG: ajs:Ajs_2356 exonuclease-like protein; exonuclease-like protein 2781590 10483703 Alide2_2655 Alicycliphilus denitrificans K601 exonuclease-like protein YP_004388528.1 2779023 R 596154 CDS YP_004388529.1 330825226 10483704 2781693..2782025 1 NC_015422.1 KEGG: vap:Vapar_2323 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin 2782025 10483704 Alide2_2656 Alicycliphilus denitrificans K601 thioredoxin YP_004388529.1 2781693 D 596154 CDS YP_004388530.1 330825227 10483705 2782252..2783514 1 NC_015422.1 TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, N-terminal; Rho termination factor, RNA-binding; KEGG: ajs:Ajs_2358 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core; Rho termination factor, N-terminal; transcription termination factor Rho 2783514 10483705 Alide2_2657 Alicycliphilus denitrificans K601 transcription termination factor Rho YP_004388530.1 2782252 D 596154 CDS YP_004388531.1 330825228 10483706 2783601..2783855 1 NC_015422.1 KEGG: dia:Dtpsy_1495 ribosomal protein L31; TIGRFAM: Ribosomal protein L31; PFAM: Ribosomal protein L31; 50S ribosomal protein L31 2783855 10483706 Alide2_2658 Alicycliphilus denitrificans K601 50S ribosomal protein L31 YP_004388531.1 2783601 D 596154 CDS YP_004388532.1 330825229 10483707 2783994..2785688 1 NC_015422.1 KEGG: ajs:Ajs_2364 putative inner membrane transmembrane protein; inner membrane transmembrane protein 2785688 10483707 Alide2_2659 Alicycliphilus denitrificans K601 inner membrane transmembrane protein YP_004388532.1 2783994 D 596154 CDS YP_004388533.1 330825230 10483708 2785688..2787046 1 NC_015422.1 KEGG: ajs:Ajs_2365 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein; MATE efflux family protein 2787046 10483708 Alide2_2660 Alicycliphilus denitrificans K601 MATE efflux family protein YP_004388533.1 2785688 D 596154 CDS YP_004388534.1 330825231 10483709 complement(2787009..2788385) 1 NC_015422.1 TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_1492 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAS/PAC sensor signal transduction histidine kinase 2788385 10483709 Alide2_2661 Alicycliphilus denitrificans K601 PAS/PAC sensor signal transduction histidine kinase YP_004388534.1 2787009 R 596154 CDS YP_004388535.1 330825232 10483710 complement(2788453..2789154) 1 NC_015422.1 TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver domain; KEGG: ajs:Ajs_2367 two component transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; two component transcriptional regulator PhoB 2789154 10483710 Alide2_2662 Alicycliphilus denitrificans K601 two component transcriptional regulator PhoB YP_004388535.1 2788453 R 596154 CDS YP_004388536.1 330825233 10483711 complement(2789151..2789852) 1 NC_015422.1 KEGG: ajs:Ajs_2368 phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU; phosphate uptake regulator PhoU 2789852 10483711 Alide2_2663 Alicycliphilus denitrificans K601 phosphate uptake regulator PhoU YP_004388536.1 2789151 R 596154 CDS YP_004388537.1 330825234 10483712 complement(2789849..2790637) 1 NC_015422.1 SMART: ATPase, AAA+ type, core; K Homology; TIGRFAM: Phosphate transport system permease protein 1; KEGG: aav:Aave_2629 phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter-like; phosphate ABC transporter ATPase 2790637 10483712 Alide2_2664 Alicycliphilus denitrificans K601 phosphate ABC transporter ATPase YP_004388537.1 2789849 R 596154 CDS YP_004388538.1 330825235 10483713 complement(2790668..2791549) 1 NC_015422.1 KEGG: ajs:Ajs_2370 phosphate transporter permease subunit PtsA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2791549 10483713 Alide2_2665 Alicycliphilus denitrificans K601 phosphate ABC transporter permease YP_004388538.1 2790668 R 596154 CDS YP_004388539.1 330825236 10483714 complement(2791546..2792568) 1 NC_015422.1 KEGG: dia:Dtpsy_1487 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2792568 10483714 Alide2_2666 Alicycliphilus denitrificans K601 phosphate ABC transporter permease YP_004388539.1 2791546 R 596154 CDS YP_004388540.1 330825237 10483715 complement(2792632..2793672) 1 NC_015422.1 KEGG: dia:Dtpsy_1486 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1; phosphate ABC transporter substrate-binding protein 2793672 10483715 Alide2_2667 Alicycliphilus denitrificans K601 phosphate ABC transporter substrate-binding protein YP_004388540.1 2792632 R 596154 CDS YP_004388541.1 330825238 10483716 2793932..2795413 1 NC_015422.1 KEGG: dia:Dtpsy_1483 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 2795413 10483716 Alide2_2668 Alicycliphilus denitrificans K601 Ppx/GppA phosphatase YP_004388541.1 2793932 D 596154 CDS YP_004388542.1 330825239 10483717 complement(2795490..2795951) 1 NC_015422.1 KEGG: ajs:Ajs_2377 phosphohistidine phosphatase, SixA; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; phosphohistidine phosphatase, SixA 2795951 10483717 Alide2_2669 Alicycliphilus denitrificans K601 phosphohistidine phosphatase, SixA YP_004388542.1 2795490 R 596154 CDS YP_004388543.1 330825240 10483718 complement(2795951..2798125) 1 NC_015422.1 PFAM: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; HAMAP: Polyphosphate kinase; KEGG: dia:Dtpsy_1480 polyphosphate kinase; polyphosphate kinase 2798125 10483718 Alide2_2670 Alicycliphilus denitrificans K601 polyphosphate kinase YP_004388543.1 2795951 R 596154 CDS YP_004388544.1 330825241 10483719 complement(2798388..2799206) 1 NC_015422.1 KEGG: dia:Dtpsy_1479 ornithine-acyl(acyl carrier protein) N-acyltransferase; ornithine-acyl(acyl carrier protein) N-acyltransferase 2799206 10483719 Alide2_2671 Alicycliphilus denitrificans K601 ornithine-acyl(acyl carrier protein) N-acyltransferase YP_004388544.1 2798388 R 596154 CDS YP_004388545.1 330825242 10483720 2799446..2801239 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: ajs:Ajs_2380 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2801239 10483720 Alide2_2672 Alicycliphilus denitrificans K601 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_004388545.1 2799446 D 596154 CDS YP_004388546.1 330825243 10483721 complement(2801331..2802665) 1 NC_015422.1 TIGRFAM: Phosphoglucosamine mutase; KEGG: dia:Dtpsy_1477 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, C-terminal; phosphoglucosamine mutase 2802665 10483721 Alide2_2673 Alicycliphilus denitrificans K601 phosphoglucosamine mutase YP_004388546.1 2801331 R 596154 CDS YP_004388547.1 330825244 10483722 complement(2802655..2803551) 1 NC_015422.1 TIGRFAM: Dihydropteroate synthase; KEGG: ajs:Ajs_2382 dihydropteroate synthase; PFAM: Pterin-binding; dihydropteroate synthase 2803551 10483722 Alide2_2674 Alicycliphilus denitrificans K601 dihydropteroate synthase YP_004388547.1 2802655 R 596154 CDS YP_004388548.1 330825245 10483723 complement(2803620..2805581) 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: dia:Dtpsy_1475 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; ATP-dependent metalloprotease FtsH 2805581 10483723 Alide2_2675 Alicycliphilus denitrificans K601 ATP-dependent metalloprotease FtsH YP_004388548.1 2803620 R 596154 CDS YP_004388549.1 330825246 10483724 complement(2805679..2806341) 1 NC_015422.1 PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dia:Dtpsy_1474 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 2806341 10483724 Alide2_2676 Alicycliphilus denitrificans K601 ribosomal RNA methyltransferase RrmJ/FtsJ YP_004388549.1 2805679 R 596154 CDS YP_004388550.1 330825247 10483725 2806362..2806832 1 NC_015422.1 PFAM: RNA-binding, CRM domain; KEGG: dia:Dtpsy_1473 protein of unknown function UPF0044; hypothetical protein 2806832 10483725 Alide2_2677 Alicycliphilus denitrificans K601 hypothetical protein YP_004388550.1 2806362 D 596154 CDS YP_004388551.1 330825248 10483726 2806832..2807575 1 NC_015422.1 KEGG: dac:Daci_4928 hypothetical protein; hypothetical protein 2807575 10483726 Alide2_2678 Alicycliphilus denitrificans K601 hypothetical protein YP_004388551.1 2806832 D 596154 CDS YP_004388552.1 330825249 10483727 complement(2807576..2807983) 1 NC_015422.1 KEGG: ajs:Ajs_2388 hypothetical protein; hypothetical protein 2807983 10483727 Alide2_2679 Alicycliphilus denitrificans K601 hypothetical protein YP_004388552.1 2807576 R 596154 CDS YP_004388553.1 330825250 10483728 complement(2807986..2808462) 1 NC_015422.1 KEGG: dia:Dtpsy_1469 transcription elongation factor GreA; TIGRFAM: Transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal; transcription elongation factor GreA 2808462 10483728 Alide2_2680 Alicycliphilus denitrificans K601 transcription elongation factor GreA YP_004388553.1 2807986 R 596154 CDS YP_004388554.1 330825251 10483729 complement(2808589..2811840) 1 NC_015422.1 SMART: Methylglyoxal synthase-like domain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; KEGG: dia:Dtpsy_1458 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; Methylglyoxal synthase-like domain; Carbamoyl-phosphate synthase, large subunit, N-terminal; carbamoyl-phosphate synthase large subunit 2811840 10483729 Alide2_2681 Alicycliphilus denitrificans K601 carbamoyl-phosphate synthase large subunit YP_004388554.1 2808589 R 596154 CDS YP_004388555.1 330825252 10483730 complement(2811840..2813018) 1 NC_015422.1 TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: aav:Aave_2610 carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; carbamoyl-phosphate synthase small subunit 2813018 10483730 Alide2_2682 Alicycliphilus denitrificans K601 carbamoyl-phosphate synthase small subunit YP_004388555.1 2811840 R 596154 CDS YP_004388556.1 330825253 10483731 2813518..2814939 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: dar:Daro_2526 phage integrase; integrase family protein 2814939 10483731 Alide2_2683 Alicycliphilus denitrificans K601 integrase family protein YP_004388556.1 2813518 D 596154 CDS YP_004388557.1 330825254 10483732 2815145..2815390 1 NC_015422.1 PFAM: Prophage CP4-57 regulatory; Prophage CP4-57 regulatory protein 2815390 10483732 Alide2_2684 Alicycliphilus denitrificans K601 Prophage CP4-57 regulatory protein YP_004388557.1 2815145 D 596154 CDS YP_004388558.1 330825255 10483733 2815527..2815850 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2815850 10483733 Alide2_2685 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004388558.1 2815527 D 596154 CDS YP_004388559.1 330825256 10483735 complement(2816797..2818170) 1 NC_015422.1 KEGG: sfu:Sfum_1898 hypothetical protein; hypothetical protein 2818170 10483735 Alide2_2687 Alicycliphilus denitrificans K601 hypothetical protein YP_004388559.1 2816797 R 596154 CDS YP_004388560.1 330825257 10483736 2818476..2819978 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: ppu:PP_2501 phage integrase, putative; integrase family protein 2819978 10483736 Alide2_2688 Alicycliphilus denitrificans K601 integrase family protein YP_004388560.1 2818476 D 596154 CDS YP_004388561.1 330825258 10483737 complement(2820227..2820958) 1 NC_015422.1 KEGG: pwa:Pecwa_1723 hypothetical protein; hypothetical protein 2820958 10483737 Alide2_2689 Alicycliphilus denitrificans K601 hypothetical protein YP_004388561.1 2820227 R 596154 CDS YP_004388562.1 330825259 10483738 complement(2820960..2821943) 1 NC_015422.1 PFAM: ATP-grasp fold, RimK-type; KEGG: psb:Psyr_2651 hypothetical protein; RimK domain-containing protein ATP-grasp 2821943 10483738 Alide2_2690 Alicycliphilus denitrificans K601 RimK domain-containing protein ATP-grasp YP_004388562.1 2820960 R 596154 CDS YP_004388563.1 330825260 10483739 complement(2821952..2822323) 1 NC_015422.1 KEGG: pwa:Pecwa_1721 hypothetical protein; hypothetical protein 2822323 10483739 Alide2_2691 Alicycliphilus denitrificans K601 hypothetical protein YP_004388563.1 2821952 R 596154 CDS YP_004388564.1 330825261 10483740 complement(2822467..2822904) 1 NC_015422.1 hypothetical protein 2822904 10483740 Alide2_2692 Alicycliphilus denitrificans K601 hypothetical protein YP_004388564.1 2822467 R 596154 CDS YP_004388565.1 330825262 10483741 complement(2823025..2824521) 1 NC_015422.1 KEGG: rcu:RCOM_1905080 hypothetical protein; hypothetical protein 2824521 10483741 Alide2_2693 Alicycliphilus denitrificans K601 hypothetical protein YP_004388565.1 2823025 R 596154 CDS YP_004388566.1 330825263 10483743 complement(2824949..2825182) 1 NC_015422.1 KEGG: dze:Dd1591_3709 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 2825182 10483743 Alide2_2695 Alicycliphilus denitrificans K601 phage transcriptional regulator AlpA YP_004388566.1 2824949 R 596154 CDS YP_004388567.1 330825264 10483744 complement(2825746..2827503) 1 NC_015422.1 PFAM: DNA helicase, UvrD/REP type; KEGG: rpf:Rpic12D_4971 DNA helicase II; UvrD/REP helicase 2827503 10483744 Alide2_2696 Alicycliphilus denitrificans K601 UvrD/REP helicase YP_004388567.1 2825746 R 596154 CDS YP_004388568.1 330825265 10483745 complement(2827485..2829509) 1 NC_015422.1 KEGG: rpf:Rpic12D_4970 ATP-dependent OLD family endonuclease; ATP-dependent OLD family endonuclease 2829509 10483745 Alide2_2697 Alicycliphilus denitrificans K601 ATP-dependent OLD family endonuclease YP_004388568.1 2827485 R 596154 CDS YP_004388569.1 330825266 10483746 complement(2829506..2829718) 1 NC_015422.1 PFAM: Histone-like bacterial DNA-binding protein; KEGG: pol:Bpro_1551 histone-like DNA-binding protein; histone family protein DNA-binding protein 2829718 10483746 Alide2_2698 Alicycliphilus denitrificans K601 histone family protein DNA-binding protein YP_004388569.1 2829506 R 596154 CDS YP_004388570.1 330825267 10483748 2830032..2830298 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_1457 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2830298 10483748 Alide2_2700 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004388570.1 2830032 D 596154 CDS YP_004388571.1 330825268 10483749 2830331..2831161 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region; integrase catalytic subunit 2831161 10483749 Alide2_2701 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004388571.1 2830331 D 596154 CDS YP_004388572.1 330825269 10483751 complement(2832197..2832817) 1 NC_015422.1 PFAM: Methyltransferase type 12; KEGG: pol:Bpro_4843 methyltransferase type 12; type 12 methyltransferase 2832817 10483751 Alide2_2703 Alicycliphilus denitrificans K601 type 12 methyltransferase YP_004388572.1 2832197 R 596154 CDS YP_004388573.1 330825270 10483753 complement(2833618..2833965) 1 NC_015422.1 PFAM: Copper binding periplasmic protein CusF; KEGG: ajs:Ajs_2667 hypothetical protein; copper binding periplasmic protein cusF 2833965 10483753 Alide2_2705 Alicycliphilus denitrificans K601 copper binding periplasmic protein cusF YP_004388573.1 2833618 R 596154 CDS YP_004388574.1 330825271 10483754 complement(2834045..2834536) 1 NC_015422.1 PFAM: Blue (type 1) copper domain; KEGG: ajs:Ajs_2668 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein 2834536 10483754 Alide2_2706 Alicycliphilus denitrificans K601 blue (type 1) copper domain-containing protein YP_004388574.1 2834045 R 596154 CDS YP_004388575.1 330825272 10483755 complement(2834570..2835982) 1 NC_015422.1 PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: ajs:Ajs_2669 multicopper oxidase, type 3; multicopper oxidase type 3 2835982 10483755 Alide2_2707 Alicycliphilus denitrificans K601 multicopper oxidase type 3 YP_004388575.1 2834570 R 596154 CDS YP_004388576.1 330825273 10483756 complement(2835999..2837429) 1 NC_015422.1 PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_2670 putative copper resistance-related lipoprotein; outer membrane efflux protein 2837429 10483756 Alide2_2708 Alicycliphilus denitrificans K601 outer membrane efflux protein YP_004388576.1 2835999 R 596154 CDS YP_004388577.1 330825274 10483757 complement(2837426..2837752) 1 NC_015422.1 KEGG: ajs:Ajs_2671 hypothetical protein; hypothetical protein 2837752 10483757 Alide2_2709 Alicycliphilus denitrificans K601 hypothetical protein YP_004388577.1 2837426 R 596154 CDS YP_004388578.1 330825275 10483758 2837936..2838244 1 NC_015422.1 hypothetical protein 2838244 10483758 Alide2_2710 Alicycliphilus denitrificans K601 hypothetical protein YP_004388578.1 2837936 D 596154 CDS YP_004388579.1 330825276 10483759 2838501..2838809 1 NC_015422.1 TIGRFAM: Flagellar hook-basal body complex protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; KEGG: ajs:Ajs_2673 flagellar hook-basal body complex subunit FliE; PFAM: Flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex protein fliE 2838809 10483759 Alide2_2711 Alicycliphilus denitrificans K601 flagellar hook-basal body complex protein fliE YP_004388579.1 2838501 D 596154 CDS YP_004388580.1 330825277 10483760 2838985..2840250 1 NC_015422.1 TIGRFAM: Acetate kinase; KEGG: ajs:Ajs_2674 acetate kinase; PFAM: Acetate/butyrate kinase; acetate kinase 2840250 10483760 Alide2_2712 Alicycliphilus denitrificans K601 acetate kinase YP_004388580.1 2838985 D 596154 CDS YP_004388581.1 330825278 10483761 2840464..2840916 1 NC_015422.1 manually curated; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: ajs:Ajs_2675 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 2840916 10483761 Alide2_2713 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004388581.1 2840464 D 596154 CDS YP_004388582.1 330825279 10483762 2841069..2842424 1 NC_015422.1 KEGG: ajs:Ajs_2676 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2842424 10483762 Alide2_2714 Alicycliphilus denitrificans K601 cyclopropane-fatty-acyl-phospholipid synthase YP_004388582.1 2841069 D 596154 CDS YP_004388583.1 330825280 10483763 2842664..2843062 1 NC_015422.1 KEGG: ajs:Ajs_2677 hypothetical protein; hypothetical protein 2843062 10483763 Alide2_2715 Alicycliphilus denitrificans K601 hypothetical protein YP_004388583.1 2842664 D 596154 CDS YP_004388584.1 330825281 10483764 2843169..2845589 1 NC_015422.1 PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; KEGG: ajs:Ajs_2678 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 2845589 10483764 Alide2_2716 Alicycliphilus denitrificans K601 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase YP_004388584.1 2843169 D 596154 CDS YP_004388585.1 330825282 10483765 2845695..2846957 1 NC_015422.1 KEGG: ajs:Ajs_2679 hypothetical protein; hypothetical protein 2846957 10483765 Alide2_2717 Alicycliphilus denitrificans K601 hypothetical protein YP_004388585.1 2845695 D 596154 CDS YP_004388586.1 330825283 10483766 complement(2847023..2848066) 1 NC_015422.1 SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type II; KEGG: ajs:Ajs_2680 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase 2848066 10483766 Alide2_2718 Alicycliphilus denitrificans K601 glyceraldehyde-3-phosphate dehydrogenase YP_004388586.1 2847023 R 596154 CDS YP_004388587.1 330825284 10483767 complement(2848094..2849713) 1 NC_015422.1 PFAM: ABC-1; KEGG: ajs:Ajs_2681 2-octaprenylphenol hydroxylase; ABC transporter 2849713 10483767 Alide2_2719 Alicycliphilus denitrificans K601 ABC transporter YP_004388587.1 2848094 R 596154 CDS YP_004388588.1 330825285 10483768 complement(2849713..2850732) 1 NC_015422.1 KEGG: ajs:Ajs_2682 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase 2850732 10483768 Alide2_2720 Alicycliphilus denitrificans K601 phosphoglycerate dehydrogenase YP_004388588.1 2849713 R 596154 CDS YP_004388589.1 330825286 10483769 complement(2850729..2851391) 1 NC_015422.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2683 methyltransferase type 11; type 11 methyltransferase 2851391 10483769 Alide2_2721 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004388589.1 2850729 R 596154 CDS YP_004388590.1 330825287 10483770 complement(2851388..2852032) 1 NC_015422.1 KEGG: ajs:Ajs_1500 hypothetical protein; hypothetical protein 2852032 10483770 Alide2_2722 Alicycliphilus denitrificans K601 hypothetical protein YP_004388590.1 2851388 R 596154 CDS YP_004388591.1 330825288 10483771 complement(2852070..2852732) 1 NC_015422.1 KEGG: ajs:Ajs_2687 hypothetical protein; hypothetical protein 2852732 10483771 Alide2_2723 Alicycliphilus denitrificans K601 hypothetical protein YP_004388591.1 2852070 R 596154 CDS YP_004388592.1 330825289 10483772 complement(2852739..2853914) 1 NC_015422.1 KEGG: ajs:Ajs_2688 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; peptidase S1 and S6 chymotrypsin/Hap 2853914 10483772 Alide2_2724 Alicycliphilus denitrificans K601 peptidase S1 and S6 chymotrypsin/Hap YP_004388592.1 2852739 R 596154 CDS YP_004388593.1 330825290 10483773 complement(2853911..2854810) 1 NC_015422.1 KEGG: ajs:Ajs_2689 phosphoribosylpyrophosphate synthetase; TIGRFAM: Phosphoribosyl pyrophosphokinase; ribose-phosphate pyrophosphokinase 2854810 10483773 Alide2_2725 Alicycliphilus denitrificans K601 ribose-phosphate pyrophosphokinase YP_004388593.1 2853911 R 596154 CDS YP_004388594.1 330825291 10483774 complement(2854807..2856348) 1 NC_015422.1 KEGG: ajs:Ajs_2690 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase, C-terminal; Glycosyl transferase, family 3; TIGRFAM: Thymidine phosphorylase, type 2; HAMAP: Thymidine phosphorylase, type 2; SMART: Pyrimidine nucleoside phosphorylase, C-terminal; thymidine phosphorylase 2856348 10483774 Alide2_2726 Alicycliphilus denitrificans K601 thymidine phosphorylase YP_004388594.1 2854807 R 596154 CDS YP_004388595.1 330825292 10483775 complement(2856345..2857703) 1 NC_015422.1 KEGG: ajs:Ajs_2691 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 2857703 10483775 Alide2_2727 Alicycliphilus denitrificans K601 beta-lactamase domain-containing protein YP_004388595.1 2856345 R 596154 CDS YP_004388596.1 330825293 10483776 complement(2857729..2858226) 1 NC_015422.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2692 hypothetical protein; hypothetical protein 2858226 10483776 Alide2_2728 Alicycliphilus denitrificans K601 hypothetical protein YP_004388596.1 2857729 R 596154 CDS YP_004388597.1 330825294 10483777 complement(2858228..2859112) 1 NC_015422.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2693 hypothetical protein; hypothetical protein 2859112 10483777 Alide2_2729 Alicycliphilus denitrificans K601 hypothetical protein YP_004388597.1 2858228 R 596154 CDS YP_004388598.1 330825295 10483778 complement(2859135..2859746) 1 NC_015422.1 PFAM: LemA; KEGG: ajs:Ajs_2694 LemA family protein; LemA family protein 2859746 10483778 Alide2_2730 Alicycliphilus denitrificans K601 LemA family protein YP_004388598.1 2859135 R 596154 CDS YP_004388599.1 330825296 10483779 complement(2859743..2861056) 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_2695 major facilitator superfamily transporter; major facilitator superfamily protein 2861056 10483779 Alide2_2731 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004388599.1 2859743 R 596154 CDS YP_004388600.1 330825297 10483780 complement(2861076..2863523) 1 NC_015422.1 TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2696 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; copper-translocating P-type ATPase 2863523 10483780 Alide2_2732 Alicycliphilus denitrificans K601 copper-translocating P-type ATPase YP_004388600.1 2861076 R 596154 CDS YP_004388601.1 330825298 10483781 complement(2863557..2864420) 1 NC_015422.1 KEGG: ajs:Ajs_2697 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related; polyphosphate kinase 2 2864420 10483781 Alide2_2733 Alicycliphilus denitrificans K601 polyphosphate kinase 2 YP_004388601.1 2863557 R 596154 CDS YP_004388602.1 330825299 10483782 complement(2864432..2864626) 1 NC_015422.1 hypothetical protein 2864626 10483782 Alide2_2734 Alicycliphilus denitrificans K601 hypothetical protein YP_004388602.1 2864432 R 596154 CDS YP_004388603.1 330825300 10483783 2865357..2865800 1 NC_015422.1 manually curated; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: ajs:Ajs_2699 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 2865800 10483783 Alide2_2735 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004388603.1 2865357 D 596154 CDS YP_004388604.1 330825301 10483784 2866093..2866443 1 NC_015422.1 KEGG: ajs:Ajs_2700 hypothetical protein; hypothetical protein 2866443 10483784 Alide2_2736 Alicycliphilus denitrificans K601 hypothetical protein YP_004388604.1 2866093 D 596154 CDS YP_004388605.1 330825302 10483785 2866669..2866908 1 NC_015422.1 KEGG: dac:Daci_0472 hypothetical protein; hypothetical protein 2866908 10483785 Alide2_2737 Alicycliphilus denitrificans K601 hypothetical protein YP_004388605.1 2866669 D 596154 CDS YP_004388606.1 330825303 10483786 complement(2867084..2868733) 1 NC_015422.1 KEGG: ajs:Ajs_2702 hypothetical protein; hypothetical protein 2868733 10483786 Alide2_2738 Alicycliphilus denitrificans K601 hypothetical protein YP_004388606.1 2867084 R 596154 CDS YP_004388607.1 330825304 10483787 complement(2868832..2872011) 1 NC_015422.1 KEGG: ajs:Ajs_2703 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 2872011 10483787 Alide2_2739 Alicycliphilus denitrificans K601 CzcA family heavy metal efflux pump YP_004388607.1 2868832 R 596154 CDS YP_004388608.1 330825305 10483788 complement(2872027..2873640) 1 NC_015422.1 TIGRFAM: Secretion protein HlyD; KEGG: ajs:Ajs_1482 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 2873640 10483788 Alide2_2740 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004388608.1 2872027 R 596154 CDS YP_004388609.1 330825306 10483789 complement(2873637..2874911) 1 NC_015422.1 PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_1481 outer membrane efflux protein; outer membrane efflux protein 2874911 10483789 Alide2_2741 Alicycliphilus denitrificans K601 outer membrane efflux protein YP_004388609.1 2873637 R 596154 CDS YP_004388610.1 330825307 10483790 complement(2874908..2875156) 1 NC_015422.1 PFAM: Protein of unknown function DUF2789; KEGG: ajs:Ajs_1480 hypothetical protein; hypothetical protein 2875156 10483790 Alide2_2742 Alicycliphilus denitrificans K601 hypothetical protein YP_004388610.1 2874908 R 596154 CDS YP_004388611.1 330825308 10483791 complement(2875214..2876494) 1 NC_015422.1 KEGG: ajs:Ajs_1479 membrane protein-like protein; hypothetical protein 2876494 10483791 Alide2_2743 Alicycliphilus denitrificans K601 hypothetical protein YP_004388611.1 2875214 R 596154 CDS YP_004388612.1 330825309 10483792 complement(2876491..2876646) 1 NC_015422.1 KEGG: dia:Dtpsy_2188 hypothetical protein; hypothetical protein 2876646 10483792 Alide2_2744 Alicycliphilus denitrificans K601 hypothetical protein YP_004388612.1 2876491 R 596154 CDS YP_004388613.1 330825310 10483793 complement(2876953..2877999) 1 NC_015422.1 TIGRFAM: YVTN beta-propeller repeat; KEGG: ajs:Ajs_1471 YVTN beta-propeller repeat-containing protein; 40-residue YVTN family beta-propeller repeat-containing protein 2877999 10483793 Alide2_2745 Alicycliphilus denitrificans K601 40-residue YVTN family beta-propeller repeat-containing protein YP_004388613.1 2876953 R 596154 CDS YP_004388614.1 330825311 10483794 complement(2878104..2879942) 1 NC_015422.1 KEGG: ajs:Ajs_1470 hypothetical protein; hypothetical protein 2879942 10483794 Alide2_2746 Alicycliphilus denitrificans K601 hypothetical protein YP_004388614.1 2878104 R 596154 CDS YP_004388615.1 330825312 10483795 complement(2879963..2882296) 1 NC_015422.1 SMART: TRASH; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lbf:LBF_0420 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated domain; YHS; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 2882296 10483795 Alide2_2747 Alicycliphilus denitrificans K601 heavy metal translocating P-type ATPase YP_004388615.1 2879963 R 596154 CDS YP_004388616.1 330825313 10483796 complement(2882300..2882551) 1 NC_015422.1 KEGG: lbf:LBF_0421 hypothetical protein; hypothetical protein 2882551 10483796 Alide2_2748 Alicycliphilus denitrificans K601 hypothetical protein YP_004388616.1 2882300 R 596154 CDS YP_004388617.1 330825314 10483797 complement(2882636..2882929) 1 NC_015422.1 KEGG: ajs:Ajs_1467 heavy metal transport/detoxification protein; manually curated; PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2882929 10483797 Alide2_2749 Alicycliphilus denitrificans K601 heavy metal transport/detoxification protein YP_004388617.1 2882636 R 596154 CDS YP_004388618.1 330825315 10483798 complement(2882980..2883648) 1 NC_015422.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ajs:Ajs_1466 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 2883648 10483798 Alide2_2750 Alicycliphilus denitrificans K601 isoprenylcysteine carboxyl methyltransferase YP_004388618.1 2882980 R 596154 CDS YP_004388619.1 330825316 10483799 complement(2883645..2883929) 1 NC_015422.1 KEGG: ajs:Ajs_1465 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2933; hypothetical protein 2883929 10483799 Alide2_2751 Alicycliphilus denitrificans K601 hypothetical protein YP_004388619.1 2883645 R 596154 CDS YP_004388620.1 330825317 10483800 complement(2883955..2884428) 1 NC_015422.1 KEGG: ajs:Ajs_1464 hypothetical protein; hypothetical protein 2884428 10483800 Alide2_2752 Alicycliphilus denitrificans K601 hypothetical protein YP_004388620.1 2883955 R 596154 CDS YP_004388621.1 330825318 10483801 complement(2884518..2884862) 1 NC_015422.1 KEGG: ajs:Ajs_1463 hypothetical protein; hypothetical protein 2884862 10483801 Alide2_2753 Alicycliphilus denitrificans K601 hypothetical protein YP_004388621.1 2884518 R 596154 CDS YP_004388622.1 330825319 10483802 2885099..2885764 1 NC_015422.1 TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: ajs:Ajs_1461 two component heavy metal response transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; two component heavy metal response transcriptional regulator 2885764 10483802 Alide2_2754 Alicycliphilus denitrificans K601 two component heavy metal response transcriptional regulator YP_004388622.1 2885099 D 596154 CDS YP_004388623.1 330825320 10483803 complement(2885761..2886675) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 2886675 10483803 Alide2_2755 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004388623.1 2885761 R 596154 CDS YP_004388624.1 330825321 10483804 complement(2886672..2886995) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2886995 10483804 Alide2_2756 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004388624.1 2886672 R 596154 CDS YP_004388625.1 330825322 10483806 complement(2887631..2888161) 1 NC_015422.1 KEGG: dat:HRM2_14600 hypothetical protein; hypothetical protein 2888161 10483806 Alide2_2758 Alicycliphilus denitrificans K601 hypothetical protein YP_004388625.1 2887631 R 596154 CDS YP_004388626.1 330825323 10483807 complement(2888161..2888550) 1 NC_015422.1 PFAM: MTH538 TIR-like domain; KEGG: hdn:Hden_3446 hypothetical protein; hypothetical protein 2888550 10483807 Alide2_2759 Alicycliphilus denitrificans K601 hypothetical protein YP_004388626.1 2888161 R 596154 CDS YP_004388627.1 330825324 10483808 complement(2889271..2890920) 1 NC_015422.1 hypothetical protein 2890920 10483808 Alide2_2760 Alicycliphilus denitrificans K601 hypothetical protein YP_004388627.1 2889271 R 596154 CDS YP_004388628.1 330825325 10483809 complement(2891349..2891789) 1 NC_015422.1 KEGG: vap:Vapar_2079 hypothetical protein; manually curated; PFAM: Thioesterase superfamily; thioesterase superfamily protein 2891789 10483809 Alide2_2761 Alicycliphilus denitrificans K601 thioesterase superfamily protein YP_004388628.1 2891349 R 596154 CDS YP_004388629.1 330825326 10483810 complement(2891903..2892451) 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_1603 hypothetical protein; hypothetical protein 2892451 10483810 Alide2_2762 Alicycliphilus denitrificans K601 hypothetical protein YP_004388629.1 2891903 R 596154 CDS YP_004388630.1 330825327 10483811 complement(2892448..2892894) 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_1602 hypothetical protein; hypothetical protein 2892894 10483811 Alide2_2763 Alicycliphilus denitrificans K601 hypothetical protein YP_004388630.1 2892448 R 596154 CDS YP_004388631.1 330825328 10483812 complement(2892902..2893177) 1 NC_015422.1 KEGG: ajs:Ajs_1601 hypothetical protein; hypothetical protein 2893177 10483812 Alide2_2764 Alicycliphilus denitrificans K601 hypothetical protein YP_004388631.1 2892902 R 596154 CDS YP_004388632.1 330825329 10483813 complement(2893174..2894205) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, protein D; KEGG: ajs:Ajs_1600 hypothetical protein; PRTRC system protein D 2894205 10483813 Alide2_2765 Alicycliphilus denitrificans K601 PRTRC system protein D YP_004388632.1 2893174 R 596154 CDS YP_004388633.1 330825330 10483814 2895406..2896545 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_1599 hypothetical protein; hypothetical protein 2896545 10483814 Alide2_2766 Alicycliphilus denitrificans K601 hypothetical protein YP_004388633.1 2895406 D 596154 CDS YP_004388634.1 330825331 10483815 complement(2896556..2896885) 1 NC_015422.1 KEGG: ajs:Ajs_1598 nucleoid protein H-NS; PFAM: Histone-like nucleoid-structuring protein H-NS; SMART: Histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 2896885 10483815 Alide2_2767 Alicycliphilus denitrificans K601 histone family protein nucleoid-structuring protein H-NS YP_004388634.1 2896556 R 596154 CDS YP_004388635.1 330825332 10483816 complement(2897014..2897223) 1 NC_015422.1 hypothetical protein 2897223 10483816 Alide2_2768 Alicycliphilus denitrificans K601 hypothetical protein YP_004388635.1 2897014 R 596154 CDS YP_004388636.1 330825333 10483818 complement(2898121..2898831) 1 NC_015422.1 KEGG: ajs:Ajs_1596 hypothetical protein; TIGRFAM: ParB-related, ThiF-related cassette, protein A; PFAM: Domain of unknown function DUF2016; PRTRC system protein A 2898831 10483818 Alide2_2770 Alicycliphilus denitrificans K601 PRTRC system protein A YP_004388636.1 2898121 R 596154 CDS YP_004388637.1 330825334 10483819 complement(2898828..2899568) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, protein B; KEGG: ajs:Ajs_1595 hypothetical protein; PRTRC system protein B 2899568 10483819 Alide2_2771 Alicycliphilus denitrificans K601 PRTRC system protein B YP_004388637.1 2898828 R 596154 CDS YP_004388638.1 330825335 10483820 2899937..2901067 1 NC_015422.1 KEGG: pol:Bpro_2745 putative transposase; transposase 2901067 10483820 Alide2_2773 Alicycliphilus denitrificans K601 transposase YP_004388638.1 2899937 D 596154 CDS YP_004388639.1 330825336 10483821 2901033..2901326 1 NC_015422.1 KEGG: pol:Bpro_2744 hypothetical protein; hypothetical protein 2901326 10483821 Alide2_2774 Alicycliphilus denitrificans K601 hypothetical protein YP_004388639.1 2901033 D 596154 CDS YP_004388640.1 330825337 10483822 complement(2902134..2902592) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, protein C; KEGG: ajs:Ajs_1593 hypothetical protein; ParB-related,ThiF-related cassette, protein C 2902592 10483822 Alide2_2775 Alicycliphilus denitrificans K601 ParB-related,ThiF-related cassette, protein C YP_004388640.1 2902134 R 596154 CDS YP_004388641.1 330825338 10483823 complement(2902689..2903165) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, protein E; KEGG: ajs:Ajs_1592 hypothetical protein; PRTRC system protein E 2903165 10483823 Alide2_2776 Alicycliphilus denitrificans K601 PRTRC system protein E YP_004388641.1 2902689 R 596154 CDS YP_004388642.1 330825339 10483824 complement(2903263..2905056) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, ParB; ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_1591 ParB family protein; SMART: ParB-like nuclease; PRTRC system ParB family protein 2905056 10483824 Alide2_2777 Alicycliphilus denitrificans K601 PRTRC system ParB family protein YP_004388642.1 2903263 R 596154 CDS YP_004388643.1 330825340 10483825 2905790..2908777 1 NC_015422.1 PFAM: DNA methylase, adenine-specific; KEGG: hch:HCH_07036 type I restriction-modification system methyltransferase subunit; N-6 DNA methylase 2908777 10483825 Alide2_2778 Alicycliphilus denitrificans K601 N-6 DNA methylase YP_004388643.1 2905790 D 596154 CDS YP_004388644.1 330825341 10483826 2908790..2909497 1 NC_015422.1 KEGG: hch:HCH_07035 hypothetical protein; hypothetical protein 2909497 10483826 Alide2_2779 Alicycliphilus denitrificans K601 hypothetical protein YP_004388644.1 2908790 D 596154 CDS YP_004388645.1 330825342 10483827 2909821..2912418 1 NC_015422.1 KEGG: seh:SeHA_C1592 helicase C2; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, ATP-dependent, c2 type; DEAD/DEAH box helicase 2912418 10483827 Alide2_2780 Alicycliphilus denitrificans K601 DEAD/DEAH box helicase YP_004388645.1 2909821 D 596154 CDS YP_004388646.1 330825343 10483829 complement(2914766..2915098) 1 NC_015422.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 2915098 10483829 Alide2_2782 Alicycliphilus denitrificans K601 IS66 Orf2 family protein YP_004388646.1 2914766 R 596154 CDS YP_004388647.1 330825344 10483830 complement(2915095..2915523) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein 2915523 10483830 Alide2_2783 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004388647.1 2915095 R 596154 CDS YP_004388648.1 330825345 10483831 complement(2915578..2916102) 1 NC_015422.1 KEGG: ajs:Ajs_1561 hypothetical protein; hypothetical protein 2916102 10483831 Alide2_2784 Alicycliphilus denitrificans K601 hypothetical protein YP_004388648.1 2915578 R 596154 CDS YP_004388649.1 330825346 10483832 2916597..2917199 1 NC_015422.1 KEGG: ajs:Ajs_1560 hypothetical protein; hypothetical protein 2917199 10483832 Alide2_2785 Alicycliphilus denitrificans K601 hypothetical protein YP_004388649.1 2916597 D 596154 CDS YP_004388650.1 330825347 10483833 2917270..2917518 1 NC_015422.1 KEGG: ajs:Ajs_1559 hypothetical protein; hypothetical protein 2917518 10483833 Alide2_2786 Alicycliphilus denitrificans K601 hypothetical protein YP_004388650.1 2917270 D 596154 CDS YP_004388651.1 330825348 10483834 2917530..2918108 1 NC_015422.1 KEGG: ajs:Ajs_1558 hypothetical protein; hypothetical protein 2918108 10483834 Alide2_2787 Alicycliphilus denitrificans K601 hypothetical protein YP_004388651.1 2917530 D 596154 CDS YP_004388652.1 330825349 10483835 2918095..2919099 1 NC_015422.1 KEGG: ajs:Ajs_1556 phage P4 alpha zinc-binding domain-containing protein; PFAM: Phage P4 alpha, zinc-binding; SMART: Phage P4 alpha, zinc-binding; P4 alpha zinc-binding domain-containing protein 2919099 10483835 Alide2_2788 Alicycliphilus denitrificans K601 P4 alpha zinc-binding domain-containing protein YP_004388652.1 2918095 D 596154 CDS YP_004388653.1 330825350 10483836 2919361..2920425 1 NC_015422.1 KEGG: ajs:Ajs_1554 hypothetical protein; hypothetical protein 2920425 10483836 Alide2_2789 Alicycliphilus denitrificans K601 hypothetical protein YP_004388653.1 2919361 D 596154 CDS YP_004388654.1 330825351 10483837 complement(2920494..2921060) 1 NC_015422.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: ajs:Ajs_1553 putative phage repressor; phage repressor 2921060 10483837 Alide2_2790 Alicycliphilus denitrificans K601 phage repressor YP_004388654.1 2920494 R 596154 CDS YP_004388655.1 330825352 10483838 2921492..2921806 1 NC_015422.1 KEGG: ajs:Ajs_1552 hypothetical protein; hypothetical protein 2921806 10483838 Alide2_2791 Alicycliphilus denitrificans K601 hypothetical protein YP_004388655.1 2921492 D 596154 CDS YP_004388656.1 330825353 10483839 2921807..2922457 1 NC_015422.1 KEGG: ajs:Ajs_1551 hypothetical protein; hypothetical protein 2922457 10483839 Alide2_2792 Alicycliphilus denitrificans K601 hypothetical protein YP_004388656.1 2921807 D 596154 CDS YP_004388657.1 330825354 10483840 2922511..2924274 1 NC_015422.1 PFAM: Uncharacterised protein family, helicase/relaxase, putative; KEGG: ajs:Ajs_1550 FHA domain-containing protein; Relaxase 2924274 10483840 Alide2_2793 Alicycliphilus denitrificans K601 Relaxase YP_004388657.1 2922511 D 596154 CDS YP_004388658.1 330825355 10483841 2924276..2926183 1 NC_015422.1 TIGRFAM: Conjugative coupling factor TraG/TraD; KEGG: ajs:Ajs_1549 hypothetical protein; conjugative coupling factor TraD 2926183 10483841 Alide2_2794 Alicycliphilus denitrificans K601 conjugative coupling factor TraD YP_004388658.1 2924276 D 596154 CDS YP_004388659.1 330825356 10483842 2926180..2926803 1 NC_015422.1 KEGG: ajs:Ajs_1548 hypothetical protein; hypothetical protein 2926803 10483842 Alide2_2795 Alicycliphilus denitrificans K601 hypothetical protein YP_004388659.1 2926180 D 596154 CDS YP_004388660.1 330825357 10483843 complement(2926818..2927063) 1 NC_015422.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: ajs:Ajs_1547 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 2927063 10483843 Alide2_2796 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004388660.1 2926818 R 596154 CDS YP_004388661.1 330825358 10483844 2927186..2927494 1 NC_015422.1 KEGG: ajs:Ajs_1546 hypothetical protein; hypothetical protein 2927494 10483844 Alide2_2797 Alicycliphilus denitrificans K601 hypothetical protein YP_004388661.1 2927186 D 596154 CDS YP_004388662.1 330825359 10483845 2927647..2928186 1 NC_015422.1 KEGG: ajs:Ajs_1545 hypothetical protein; hypothetical protein 2928186 10483845 Alide2_2798 Alicycliphilus denitrificans K601 hypothetical protein YP_004388662.1 2927647 D 596154 CDS YP_004388663.1 330825360 10483846 2928361..2928897 1 NC_015422.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_1544 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 2928897 10483846 Alide2_2799 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004388663.1 2928361 D 596154 CDS YP_004388664.1 330825361 10483847 2928894..2929598 1 NC_015422.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dar:Daro_2312 OmpA/MotB; OmpA/MotB domain-containing protein 2929598 10483847 Alide2_2800 Alicycliphilus denitrificans K601 OmpA/MotB domain-containing protein YP_004388664.1 2928894 D 596154 CDS YP_004388665.1 330825362 10483848 2929713..2930075 1 NC_015422.1 KEGG: ajs:Ajs_1542 hypothetical protein; hypothetical protein 2930075 10483848 Alide2_2801 Alicycliphilus denitrificans K601 hypothetical protein YP_004388665.1 2929713 D 596154 CDS YP_004388666.1 330825363 10483849 2930107..2930406 1 NC_015422.1 KEGG: ajs:Ajs_1541 TraL family protein; TIGRFAM: Type IV conjugative transfer system, protein TraL; PFAM: Type IV conjugative transfer system, protein TraL; type IV conjugative transfer system protein TraL 2930406 10483849 Alide2_2802 Alicycliphilus denitrificans K601 type IV conjugative transfer system protein TraL YP_004388666.1 2930107 D 596154 CDS YP_004388667.1 330825364 10483850 2930421..2930987 1 NC_015422.1 TIGRFAM: Pilus assembly TraE; KEGG: ajs:Ajs_1540 plasmid-like conjugative transfer protein TraE; type IV conjugative transfer system protein TraE 2930987 10483850 Alide2_2803 Alicycliphilus denitrificans K601 type IV conjugative transfer system protein TraE YP_004388667.1 2930421 D 596154 CDS YP_004388668.1 330825365 10483851 2930974..2931966 1 NC_015422.1 KEGG: ajs:Ajs_1539 hypothetical protein; hypothetical protein 2931966 10483851 Alide2_2804 Alicycliphilus denitrificans K601 hypothetical protein YP_004388668.1 2930974 D 596154 CDS YP_004388669.1 330825366 10483852 2931963..2933369 1 NC_015422.1 KEGG: ajs:Ajs_1538 TraB pilus assembly family protein; TraB pilus assembly family protein 2933369 10483852 Alide2_2805 Alicycliphilus denitrificans K601 TraB pilus assembly family protein YP_004388669.1 2931963 D 596154 CDS YP_004388670.1 330825367 10483853 2933353..2934198 1 NC_015422.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_1537 periplasmic thiol:disulfide interchange protein; disulfide bond isomerase DsbC/G 2934198 10483853 Alide2_2806 Alicycliphilus denitrificans K601 disulfide bond isomerase DsbC/G YP_004388670.1 2933353 D 596154 CDS YP_004388671.1 330825368 10483854 2934195..2934839 1 NC_015422.1 KEGG: ajs:Ajs_1536 hypothetical protein; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV; type IV conjugative transfer system protein TraV 2934839 10483854 Alide2_2807 Alicycliphilus denitrificans K601 type IV conjugative transfer system protein TraV YP_004388671.1 2934195 D 596154 CDS YP_004388672.1 330825369 10483855 2934847..2937429 1 NC_015422.1 TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_1535 hypothetical protein; type-IV secretion system protein TraC 2937429 10483855 Alide2_2808 Alicycliphilus denitrificans K601 type-IV secretion system protein TraC YP_004388672.1 2934847 D 596154 CDS YP_004388673.1 330825370 10483856 2937426..2937785 1 NC_015422.1 KEGG: ajs:Ajs_1534 hypothetical protein; hypothetical protein 2937785 10483856 Alide2_2809 Alicycliphilus denitrificans K601 hypothetical protein YP_004388673.1 2937426 D 596154 CDS YP_004388674.1 330825371 10483857 2937782..2938369 1 NC_015422.1 KEGG: ajs:Ajs_1533 hypothetical protein; TIGRFAM: Peptidase S26C, conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region; conjugative transfer signal peptidase TraF 2938369 10483857 Alide2_2810 Alicycliphilus denitrificans K601 conjugative transfer signal peptidase TraF YP_004388674.1 2937782 D 596154 CDS YP_004388675.1 330825372 10483858 2938381..2938788 1 NC_015422.1 KEGG: ajs:Ajs_1532 hypothetical protein; hypothetical protein 2938788 10483858 Alide2_2811 Alicycliphilus denitrificans K601 hypothetical protein YP_004388675.1 2938381 D 596154 CDS YP_004388676.1 330825373 10483859 2938785..2939414 1 NC_015422.1 TIGRFAM: Type-F conjugative transfer system protein TraW; KEGG: ajs:Ajs_1531 membrane lipoprotein lipid attachment site; type-F conjugative transfer system protein TraW 2939414 10483859 Alide2_2812 Alicycliphilus denitrificans K601 type-F conjugative transfer system protein TraW YP_004388676.1 2938785 D 596154 CDS YP_004388677.1 330825374 10483860 2939411..2940430 1 NC_015422.1 PFAM: TraU; KEGG: ajs:Ajs_1530 TraU family protein; TraU family protein 2940430 10483860 Alide2_2813 Alicycliphilus denitrificans K601 TraU family protein YP_004388677.1 2939411 D 596154 CDS YP_004388678.1 330825375 10483861 2940417..2941169 1 NC_015422.1 KEGG: ajs:Ajs_1529 hypothetical protein; TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC, subgroup; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; type-F conjugative transfer system pilin assembly protein TrbC 2941169 10483861 Alide2_2814 Alicycliphilus denitrificans K601 type-F conjugative transfer system pilin assembly protein TrbC YP_004388678.1 2940417 D 596154 CDS YP_004388679.1 330825376 10483862 2941179..2943596 1 NC_015422.1 KEGG: ajs:Ajs_1528 conjugal transfer mating pair stabilization protein TraN; conjugal transfer mating pair stabilization protein TraN 2943596 10483862 Alide2_2815 Alicycliphilus denitrificans K601 conjugal transfer mating pair stabilization protein TraN YP_004388679.1 2941179 D 596154 CDS YP_004388680.1 330825377 10483863 2943593..2943988 1 NC_015422.1 KEGG: ajs:Ajs_1527 hypothetical protein; hypothetical protein 2943988 10483863 Alide2_2816 Alicycliphilus denitrificans K601 hypothetical protein YP_004388680.1 2943593 D 596154 CDS YP_004388681.1 330825378 10483864 2943996..2944874 1 NC_015422.1 TIGRFAM: Type IV conjugative transfer system protein TraF; KEGG: ajs:Ajs_1526 hypothetical protein; TraF-like protein 2944874 10483864 Alide2_2817 Alicycliphilus denitrificans K601 TraF-like protein YP_004388681.1 2943996 D 596154 CDS YP_004388682.1 330825379 10483865 2944884..2946332 1 NC_015422.1 PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_1525 TraH family protein; TraH family protein 2946332 10483865 Alide2_2818 Alicycliphilus denitrificans K601 TraH family protein YP_004388682.1 2944884 D 596154 CDS YP_004388683.1 330825380 10483866 2946354..2949128 1 NC_015422.1 PFAM: TraG-like, N-terminal; KEGG: ajs:Ajs_1524 TraG domain-containing protein; TraG domain-containing protein 2949128 10483866 Alide2_2819 Alicycliphilus denitrificans K601 TraG domain-containing protein YP_004388683.1 2946354 D 596154 CDS YP_004388684.1 330825381 10483867 complement(2949134..2949469) 1 NC_015422.1 KEGG: ajs:Ajs_1521 hypothetical protein; hypothetical protein 2949469 10483867 Alide2_2820 Alicycliphilus denitrificans K601 hypothetical protein YP_004388684.1 2949134 R 596154 CDS YP_004388685.1 330825382 10483868 2949955..2951064 1 NC_015422.1 hypothetical protein 2951064 10483868 Alide2_2821 Alicycliphilus denitrificans K601 hypothetical protein YP_004388685.1 2949955 D 596154 CDS YP_004388686.1 330825383 10483869 2951033..2951890 1 NC_015422.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: mmu:16621 kallikrein B, plasma 1; SMART: Peptidase S1/S6, chymotrypsin/Hap; Trypsin 2951890 10483869 Alide2_2822 Alicycliphilus denitrificans K601 Trypsin YP_004388686.1 2951033 D 596154 CDS YP_004388687.1 330825384 10483871 complement(2952262..2952687) 1 NC_015422.1 KEGG: dia:Dtpsy_1455 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 2952687 10483871 Alide2_2823 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004388687.1 2952262 R 596154 CDS YP_004388688.1 330825385 10483872 complement(2952787..2953140) 1 NC_015422.1 TIGRFAM: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_1454 integration host factor subunit alpha; SMART: Histone-like bacterial DNA-binding protein; integration host factor subunit alpha 2953140 10483872 Alide2_2824 Alicycliphilus denitrificans K601 integration host factor subunit alpha YP_004388688.1 2952787 R 596154 CDS YP_004388689.1 330825386 10483873 complement(2953137..2955581) 1 NC_015422.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: ajs:Ajs_2395 phenylalanyl-tRNA synthetase subunit beta; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; phenylalanyl-tRNA synthetase subunit beta 2955581 10483873 Alide2_2825 Alicycliphilus denitrificans K601 phenylalanyl-tRNA synthetase subunit beta YP_004388689.1 2953137 R 596154 CDS YP_004388690.1 330825387 10483874 complement(2955705..2956757) 1 NC_015422.1 KEGG: dia:Dtpsy_1452 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal; phenylalanyl-tRNA synthetase subunit alpha 2956757 10483874 Alide2_2826 Alicycliphilus denitrificans K601 phenylalanyl-tRNA synthetase subunit alpha YP_004388690.1 2955705 R 596154 CDS YP_004388691.1 330825388 10483875 complement(2956859..2957218) 1 NC_015422.1 TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: ajs:Ajs_2397 50S ribosomal protein L20; PFAM: Ribosomal protein L20; 50S ribosomal protein L20 2957218 10483875 Alide2_2827 Alicycliphilus denitrificans K601 50S ribosomal protein L20 YP_004388691.1 2956859 R 596154 CDS YP_004388692.1 330825389 10483876 complement(2957245..2957448) 1 NC_015422.1 KEGG: aav:Aave_2857 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35, non-mitochondrial; PFAM: Ribosomal protein L35; 50S ribosomal protein L35 2957448 10483876 Alide2_2828 Alicycliphilus denitrificans K601 50S ribosomal protein L35 YP_004388692.1 2957245 R 596154 CDS YP_004388693.1 330825390 10483877 complement(2957624..2958223) 1 NC_015422.1 PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; manually curated; TIGRFAM: Translation initiation factor 3; KEGG: ajs:Ajs_2399 translation initiation factor 3; HAMAP: Translation initiation factor 3; translation initiation factor IF-3 2958223 10483877 Alide2_2829 Alicycliphilus denitrificans K601 translation initiation factor IF-3 YP_004388693.1 2957624 R 596154 CDS YP_004388694.1 330825391 10483878 complement(2958302..2960221) 1 NC_015422.1 TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; KEGG: ajs:Ajs_2400 threonyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD; threonyl-tRNA synthetase 2960221 10483878 Alide2_2830 Alicycliphilus denitrificans K601 threonyl-tRNA synthetase YP_004388694.1 2958302 R 596154 CDS YP_004388695.1 330825392 10483879 complement(2960580..2961491) 1 NC_015422.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: bbr:BB4124 putative enzyme-regulator fusion protein; GreA/GreB family elongation factor 2961491 10483879 Alide2_2831 Alicycliphilus denitrificans K601 GreA/GreB family elongation factor YP_004388695.1 2960580 R 596154 CDS YP_004388696.1 330825393 10483880 complement(2961912..2963243) 1 NC_015422.1 TIGRFAM: Isocitrate lyase; KEGG: dia:Dtpsy_1447 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase; isocitrate lyase 2963243 10483880 Alide2_2832 Alicycliphilus denitrificans K601 isocitrate lyase YP_004388696.1 2961912 R 596154 CDS YP_004388697.1 330825394 10483881 2963509..2964528 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_2402 hypothetical protein; hypothetical protein 2964528 10483881 Alide2_2833 Alicycliphilus denitrificans K601 hypothetical protein YP_004388697.1 2963509 D 596154 CDS YP_004388698.1 330825395 10483882 2964685..2964966 1 NC_015422.1 KEGG: dia:Dtpsy_1444 SWIB/MDM2 domain protein; PFAM: SWIB/MDM2 domain; SMART: SWIB domain; SWIB/MDM2 domain-containing protein 2964966 10483882 Alide2_2834 Alicycliphilus denitrificans K601 SWIB/MDM2 domain-containing protein YP_004388698.1 2964685 D 596154 CDS YP_004388699.1 330825396 10483883 2965161..2965433 1 NC_015422.1 KEGG: dia:Dtpsy_1443 BFD domain protein (2Fe-2S)-binding domain protein; manually curated; PFAM: BFD-like [2Fe-2S]-binding domain; 2Fe-2S-binding domain-containing protein 2965433 10483883 Alide2_2835 Alicycliphilus denitrificans K601 2Fe-2S-binding domain-containing protein YP_004388699.1 2965161 D 596154 CDS YP_004388700.1 330825397 10483884 2965589..2966251 1 NC_015422.1 KEGG: dia:Dtpsy_1442 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: TonB, C-terminal; TonB family protein 2966251 10483884 Alide2_2836 Alicycliphilus denitrificans K601 TonB family protein YP_004388700.1 2965589 D 596154 CDS YP_004388701.1 330825398 10483885 2966267..2966986 1 NC_015422.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_1441 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2966986 10483885 Alide2_2837 Alicycliphilus denitrificans K601 MotA/TolQ/ExbB proton channel YP_004388701.1 2966267 D 596154 CDS YP_004388702.1 330825399 10483886 2966993..2967403 1 NC_015422.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2408 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2967403 10483886 Alide2_2838 Alicycliphilus denitrificans K601 biopolymer transport protein ExbD/TolR YP_004388702.1 2966993 D 596154 CDS YP_004388703.1 330825400 10483887 2967499..2967726 1 NC_015422.1 PFAM: Hemin uptake protein HemP; KEGG: ajs:Ajs_2409 hypothetical protein; hemin uptake protein HemP 2967726 10483887 Alide2_2839 Alicycliphilus denitrificans K601 hemin uptake protein HemP YP_004388703.1 2967499 D 596154 CDS YP_004388704.1 330825401 10483888 complement(2967954..2968361) 1 NC_015422.1 PFAM: Domain of unknown function DUF336; KEGG: dia:Dtpsy_1438 protein of unknown function DUF336; hypothetical protein 2968361 10483888 Alide2_2840 Alicycliphilus denitrificans K601 hypothetical protein YP_004388704.1 2967954 R 596154 CDS YP_004388705.1 330825402 10483889 2968580..2969269 1 NC_015422.1 PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: dia:Dtpsy_1437 protein of unknown function UPF0005; hypothetical protein 2969269 10483889 Alide2_2841 Alicycliphilus denitrificans K601 hypothetical protein YP_004388705.1 2968580 D 596154 CDS YP_004388706.1 330825403 10483890 2969388..2969891 1 NC_015422.1 KEGG: rme:Rmet_3623 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; regulatory protein MarR 2969891 10483890 Alide2_2842 Alicycliphilus denitrificans K601 regulatory protein MarR YP_004388706.1 2969388 D 596154 CDS YP_004388707.1 330825404 10483891 2969888..2971321 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: reu:Reut_B5563 major facilitator transporter; major facilitator superfamily protein 2971321 10483891 Alide2_2843 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004388707.1 2969888 D 596154 CDS YP_004388708.1 330825405 10483892 2971375..2971758 1 NC_015422.1 KEGG: ajs:Ajs_2412 hypothetical protein; hypothetical protein 2971758 10483892 Alide2_2844 Alicycliphilus denitrificans K601 hypothetical protein YP_004388708.1 2971375 D 596154 CDS YP_004388709.1 330825406 10483893 complement(2971791..2972123) 1 NC_015422.1 PFAM: Small multidrug resistance protein; KEGG: dia:Dtpsy_1617 small multidrug resistance protein; small multidrug resistance protein 2972123 10483893 Alide2_2845 Alicycliphilus denitrificans K601 small multidrug resistance protein YP_004388709.1 2971791 R 596154 CDS YP_004388710.1 330825407 10483894 2972338..2972928 1 NC_015422.1 PFAM: Chromate transporter; KEGG: dia:Dtpsy_1615 chromate transporter; chromate transporter 2972928 10483894 Alide2_2846 Alicycliphilus denitrificans K601 chromate transporter YP_004388710.1 2972338 D 596154 CDS YP_004388711.1 330825408 10483895 2972931..2973524 1 NC_015422.1 PFAM: Chromate transporter; KEGG: dia:Dtpsy_1614 chromate transporter; chromate transporter 2973524 10483895 Alide2_2847 Alicycliphilus denitrificans K601 chromate transporter YP_004388711.1 2972931 D 596154 CDS YP_004388712.1 330825409 10483896 complement(2973546..2974373) 1 NC_015422.1 KEGG: dia:Dtpsy_1612 silent information regulator protein Sir2; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; NAD-dependent deacetylase 2974373 10483896 Alide2_2848 Alicycliphilus denitrificans K601 NAD-dependent deacetylase YP_004388712.1 2973546 R 596154 CDS YP_004388713.1 330825410 10483897 complement(2974395..2975060) 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_1611 regulatory protein TetR; TetR family transcriptional regulator 2975060 10483897 Alide2_2849 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004388713.1 2974395 R 596154 CDS YP_004388714.1 330825411 10483898 2975144..2975497 1 NC_015422.1 PFAM: Protein of unknown function DUF1428; KEGG: dia:Dtpsy_1610 protein of unknown function DUF1428; hypothetical protein 2975497 10483898 Alide2_2850 Alicycliphilus denitrificans K601 hypothetical protein YP_004388714.1 2975144 D 596154 CDS YP_004388715.1 330825412 10483899 2975542..2975889 1 NC_015422.1 PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: pol:Bpro_2417 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 2975889 10483899 Alide2_2851 Alicycliphilus denitrificans K601 glutathione-dependent formaldehyde-activating protein YP_004388715.1 2975542 D 596154 CDS YP_004388716.1 330825413 10483900 2975983..2976435 1 NC_015422.1 KEGG: ajs:Ajs_2265 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2976435 10483900 Alide2_2852 Alicycliphilus denitrificans K601 3-demethylubiquinone-9 3-methyltransferase YP_004388716.1 2975983 D 596154 CDS YP_004388717.1 330825414 10483901 2976468..2976914 1 NC_015422.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: dia:Dtpsy_1608 activator of HSP90 ATPase 1 family protein; Activator of Hsp90 ATPase 1 family protein 2976914 10483901 Alide2_2853 Alicycliphilus denitrificans K601 Activator of Hsp90 ATPase 1 family protein YP_004388717.1 2976468 D 596154 CDS YP_004388718.1 330825415 10483902 2976950..2977435 1 NC_015422.1 KEGG: gur:Gura_0848 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2977435 10483902 Alide2_2854 Alicycliphilus denitrificans K601 3-demethylubiquinone-9 3-methyltransferase YP_004388718.1 2976950 D 596154 CDS YP_004388719.1 330825416 10483903 2977558..2977941 1 NC_015422.1 KEGG: dac:Daci_4029 hypothetical protein; hypothetical protein 2977941 10483903 Alide2_2855 Alicycliphilus denitrificans K601 hypothetical protein YP_004388719.1 2977558 D 596154 CDS YP_004388720.1 330825417 10483904 2977948..2978406 1 NC_015422.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: dar:Daro_2725 hypothetical protein; Activator of Hsp90 ATPase 1 family protein 2978406 10483904 Alide2_2856 Alicycliphilus denitrificans K601 Activator of Hsp90 ATPase 1 family protein YP_004388720.1 2977948 D 596154 CDS YP_004388721.1 330825418 10483905 complement(2978413..2979159) 1 NC_015422.1 TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: dia:Dtpsy_1606 RNA methyltransferase, TrmH family, group 3; SMART: RNA 2-O ribose methyltransferase, substrate binding; TrmH family RNA methyltransferase 2979159 10483905 Alide2_2857 Alicycliphilus denitrificans K601 TrmH family RNA methyltransferase YP_004388721.1 2978413 R 596154 CDS YP_004388722.1 330825419 10483906 2979302..2980513 1 NC_015422.1 KEGG: dia:Dtpsy_1605 serine/threonine transporter SstT; HAMAP: Serine/threonine transporter SstT; PFAM: Sodium:dicarboxylate symporter; serine/threonine transporter sstT 2980513 10483906 Alide2_2858 Alicycliphilus denitrificans K601 serine/threonine transporter sstT YP_004388722.1 2979302 D 596154 CDS YP_004388723.1 330825420 10483907 complement(2980547..2981269) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1604 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 2981269 10483907 Alide2_2859 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004388723.1 2980547 R 596154 CDS YP_004388724.1 330825421 10483908 2981294..2981941 1 NC_015422.1 KEGG: dia:Dtpsy_1603 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; arylesterase 2981941 10483908 Alide2_2860 Alicycliphilus denitrificans K601 arylesterase YP_004388724.1 2981294 D 596154 CDS YP_004388725.1 330825422 10483909 complement(2981955..2982785) 1 NC_015422.1 PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: dia:Dtpsy_1602 integral membrane protein; hypothetical protein 2982785 10483909 Alide2_2861 Alicycliphilus denitrificans K601 hypothetical protein YP_004388725.1 2981955 R 596154 CDS YP_004388726.1 330825423 10483910 complement(2982898..2984127) 1 NC_015422.1 KEGG: dia:Dtpsy_1601 Cys/Met metabolism pyridoxal-phosphate-dependent protein; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; Cystathionine beta-lyase 2984127 10483910 Alide2_2862 Alicycliphilus denitrificans K601 Cystathionine beta-lyase YP_004388726.1 2982898 R 596154 CDS YP_004388727.1 330825424 10483911 complement(2984148..2984603) 1 NC_015422.1 KEGG: dia:Dtpsy_1600 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria; transport-associated protein 2984603 10483911 Alide2_2863 Alicycliphilus denitrificans K601 transport-associated protein YP_004388727.1 2984148 R 596154 CDS YP_004388728.1 330825425 10483912 2984730..2986415 1 NC_015422.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: ajs:Ajs_2275 sulphate transporter; sulfate transporter 2986415 10483912 Alide2_2864 Alicycliphilus denitrificans K601 sulfate transporter YP_004388728.1 2984730 D 596154 CDS YP_004388729.1 330825426 10483913 2986452..2987225 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_1598 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 2987225 10483913 Alide2_2865 Alicycliphilus denitrificans K601 diguanylate cyclase YP_004388729.1 2986452 D 596154 CDS YP_004388730.1 330825427 10483914 2987236..2988105 1 NC_015422.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_1597 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase 2988105 10483914 Alide2_2866 Alicycliphilus denitrificans K601 Cobyrinic acid ac-diamide synthase YP_004388730.1 2987236 D 596154 CDS YP_004388731.1 330825428 10483915 complement(2988176..2990080) 1 NC_015422.1 TIGRFAM: Propionate--CoA ligase; KEGG: dia:Dtpsy_1825 propionyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; propionate/CoA ligase 2990080 10483915 Alide2_2867 Alicycliphilus denitrificans K601 propionate/CoA ligase YP_004388731.1 2988176 R 596154 CDS YP_004388732.1 330825429 10483916 complement(2990201..2990809) 1 NC_015422.1 PFAM: Isochorismatase-like; KEGG: dia:Dtpsy_1824 isochorismatase hydrolase; isochorismatase hydrolase 2990809 10483916 Alide2_2868 Alicycliphilus denitrificans K601 isochorismatase hydrolase YP_004388732.1 2990201 R 596154 CDS YP_004388733.1 330825430 10483917 complement(2990873..2991976) 1 NC_015422.1 KEGG: dia:Dtpsy_1823 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 2991976 10483917 Alide2_2869 Alicycliphilus denitrificans K601 glucose sorbosone dehydrogenase YP_004388733.1 2990873 R 596154 CDS YP_004388734.1 330825431 10483918 complement(2992122..2993036) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1814 transcriptional regulator, LysR family; LysR family transcriptional regulator 2993036 10483918 Alide2_2870 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388734.1 2992122 R 596154 CDS YP_004388735.1 330825432 10483919 2993167..2994684 1 NC_015422.1 TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase [acylating]; PFAM: Aldehyde dehydrogenase domain; methylmalonate-semialdehyde dehydrogenase 2994684 10483919 Alide2_2871 Alicycliphilus denitrificans K601 methylmalonate-semialdehyde dehydrogenase YP_004388735.1 2993167 D 596154 CDS YP_004388736.1 330825433 10483920 2994681..2995079 1 NC_015422.1 PFAM: Protein of unknown function DUF1311; KEGG: ajs:Ajs_2008 hypothetical protein; hypothetical protein 2995079 10483920 Alide2_2872 Alicycliphilus denitrificans K601 hypothetical protein YP_004388736.1 2994681 D 596154 CDS YP_004388737.1 330825434 10483921 2995105..2996271 1 NC_015422.1 KEGG: ajs:Ajs_2007 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase 2996271 10483921 Alide2_2873 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004388737.1 2995105 D 596154 CDS YP_004388738.1 330825435 10483922 2996339..2996725 1 NC_015422.1 PFAM: TfoX, N-terminal; KEGG: dia:Dtpsy_1810 hypothetical protein; TfoX domain-containing protein 2996725 10483922 Alide2_2874 Alicycliphilus denitrificans K601 TfoX domain-containing protein YP_004388738.1 2996339 D 596154 CDS YP_004388739.1 330825436 10483923 2996756..2997652 1 NC_015422.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: dia:Dtpsy_1809 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 2997652 10483923 Alide2_2875 Alicycliphilus denitrificans K601 3-hydroxyisobutyrate dehydrogenase YP_004388739.1 2996756 D 596154 CDS YP_004388740.1 330825437 10483924 2997815..2998648 1 NC_015422.1 TIGRFAM: Methyltransferase FkbM; KEGG: ter:Tery_1754 FkbM family methyltransferase; FkbM family methyltransferase 2998648 10483924 Alide2_2876 Alicycliphilus denitrificans K601 FkbM family methyltransferase YP_004388740.1 2997815 D 596154 CDS YP_004388741.1 330825438 10483925 2998918..2999088 1 NC_015422.1 manually curated; KEGG: har:HEAR0421 hypothetical protein; hypothetical protein 2999088 10483925 Alide2_2877 Alicycliphilus denitrificans K601 hypothetical protein YP_004388741.1 2998918 D 596154 CDS YP_004388742.1 330825439 10483926 complement(2999146..2999535) 1 NC_015422.1 KEGG: dia:Dtpsy_1801 hypothetical protein; hypothetical protein 2999535 10483926 Alide2_2878 Alicycliphilus denitrificans K601 hypothetical protein YP_004388742.1 2999146 R 596154 CDS YP_004388743.1 330825440 10483927 2999673..3000881 1 NC_015422.1 TIGRFAM: Tryptophan synthase, beta chain; KEGG: dia:Dtpsy_1800 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; tryptophan synthase subunit beta 3000881 10483927 Alide2_2879 Alicycliphilus denitrificans K601 tryptophan synthase subunit beta YP_004388743.1 2999673 D 596154 CDS YP_004388744.1 330825441 10483928 3000909..3001247 1 NC_015422.1 PFAM: Protein of unknown function DUF469; KEGG: dia:Dtpsy_1799 protein of unknown function DUF469; hypothetical protein 3001247 10483928 Alide2_2880 Alicycliphilus denitrificans K601 hypothetical protein YP_004388744.1 3000909 D 596154 CDS YP_004388745.1 330825442 10483929 complement(3001324..3002904) 1 NC_015422.1 SMART: SAF domain; TIGRFAM: Galactarate dehydratase; KEGG: ajs:Ajs_1998 galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; galactarate dehydratase 3002904 10483929 Alide2_2881 Alicycliphilus denitrificans K601 galactarate dehydratase YP_004388745.1 3001324 R 596154 CDS YP_004388746.1 330825443 10483930 complement(3002945..3003943) 1 NC_015422.1 KEGG: ajs:Ajs_1997 hypothetical protein; hypothetical protein 3003943 10483930 Alide2_2882 Alicycliphilus denitrificans K601 hypothetical protein YP_004388746.1 3002945 R 596154 CDS YP_004388747.1 330825444 10483931 complement(3003968..3005263) 1 NC_015422.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: ctt:CtCNB1_0239 mandelate racemase/muconate lactonizing; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; glucarate dehydratase 3005263 10483931 Alide2_2883 Alicycliphilus denitrificans K601 glucarate dehydratase YP_004388747.1 3003968 R 596154 CDS YP_004388748.1 330825445 10483932 3005269..3006102 1 NC_015422.1 KEGG: ctt:CtCNB1_0240 GntR-like protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 3006102 10483932 Alide2_2884 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004388748.1 3005269 D 596154 CDS YP_004388749.1 330825446 10483933 3006195..3007181 1 NC_015422.1 KEGG: dia:Dtpsy_1794 hypothetical protein; hypothetical protein 3007181 10483933 Alide2_2885 Alicycliphilus denitrificans K601 hypothetical protein YP_004388749.1 3006195 D 596154 CDS YP_004388750.1 330825447 10483934 3007253..3008164 1 NC_015422.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; HAMAP: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: dia:Dtpsy_1793 5-dehydro-4-deoxyglucarate dehydratase; 5-dehydro-4-deoxyglucarate dehydratase 3008164 10483934 Alide2_2886 Alicycliphilus denitrificans K601 5-dehydro-4-deoxyglucarate dehydratase YP_004388750.1 3007253 D 596154 CDS YP_004388751.1 330825448 10483935 3008238..3009191 1 NC_015422.1 KEGG: ajs:Ajs_1992 hypothetical protein; hypothetical protein 3009191 10483935 Alide2_2887 Alicycliphilus denitrificans K601 hypothetical protein YP_004388751.1 3008238 D 596154 CDS YP_004388752.1 330825449 10483936 3009203..3010195 1 NC_015422.1 KEGG: ajs:Ajs_1991 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; glyoxylate reductase 3010195 10483936 Alide2_2888 Alicycliphilus denitrificans K601 glyoxylate reductase YP_004388752.1 3009203 D 596154 CDS YP_004388753.1 330825450 10483937 3010227..3011564 1 NC_015422.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: dia:Dtpsy_1790 glucarate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; glucarate dehydratase 3011564 10483937 Alide2_2889 Alicycliphilus denitrificans K601 glucarate dehydratase YP_004388753.1 3010227 D 596154 CDS YP_004388754.1 330825451 10483938 3011636..3013084 1 NC_015422.1 PFAM: Aldehyde dehydrogenase domain; KEGG: ctt:CtCNB1_0246 aldehyde dehydrogenase; aldehyde dehydrogenase 3013084 10483938 Alide2_2890 Alicycliphilus denitrificans K601 aldehyde dehydrogenase YP_004388754.1 3011636 D 596154 CDS YP_004388755.1 330825452 10483939 3013154..3013906 1 NC_015422.1 PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: dia:Dtpsy_1788 leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA--protein transferase 3013906 10483939 Alide2_2891 Alicycliphilus denitrificans K601 leucyl/phenylalanyl-tRNA--protein transferase YP_004388755.1 3013154 D 596154 CDS YP_004388756.1 330825453 10483940 3013903..3014646 1 NC_015422.1 KEGG: dia:Dtpsy_1787 arginyl-tRNA-protein transferase; HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal; arginyl-tRNA--protein transferase 3014646 10483940 Alide2_2892 Alicycliphilus denitrificans K601 arginyl-tRNA--protein transferase YP_004388756.1 3013903 D 596154 CDS YP_004388757.1 330825454 10483941 complement(3014719..3015420) 1 NC_015422.1 PFAM: Pirin, N-terminal; KEGG: ajs:Ajs_1985 pirin domain-containing protein; Pirin domain-containing protein 3015420 10483941 Alide2_2893 Alicycliphilus denitrificans K601 Pirin domain-containing protein YP_004388757.1 3014719 R 596154 CDS YP_004388758.1 330825455 10483942 3015532..3016467 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1784 transcriptional regulator, LysR family; LysR family transcriptional regulator 3016467 10483942 Alide2_2894 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388758.1 3015532 D 596154 CDS YP_004388759.1 330825456 10483943 3016542..3017636 1 NC_015422.1 PFAM: Amine oxidase; KEGG: ajs:Ajs_1983 FAD dependent oxidoreductase; amine oxidase 3017636 10483943 Alide2_2895 Alicycliphilus denitrificans K601 amine oxidase YP_004388759.1 3016542 D 596154 CDS YP_004388760.1 330825457 10483944 3017633..3018598 1 NC_015422.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; TIGRFAM: Glutamyl-Q tRNA(Asp) synthetase; HAMAP: Glutamyl-Q tRNA(Asp) synthetase; KEGG: ajs:Ajs_1982 glutamate--tRNA ligase; glutamyl-Q tRNA(Asp) synthetase 3018598 10483944 Alide2_2896 Alicycliphilus denitrificans K601 glutamyl-Q tRNA(Asp) synthetase YP_004388760.1 3017633 D 596154 CDS YP_004388761.1 330825458 10483945 3018556..3019329 1 NC_015422.1 TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; KEGG: dia:Dtpsy_1781 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 3019329 10483945 Alide2_2897 Alicycliphilus denitrificans K601 tRNA (guanine-N(7)-)-methyltransferase YP_004388761.1 3018556 D 596154 CDS YP_004388762.1 330825459 10483946 3019358..3020362 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_1780 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 3020362 10483946 Alide2_2898 Alicycliphilus denitrificans K601 diguanylate cyclase YP_004388762.1 3019358 D 596154 CDS YP_004388763.1 330825460 10483947 complement(3020413..3023034) 1 NC_015422.1 TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; KEGG: dia:Dtpsy_1779 alanyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD; alanyl-tRNA synthetase 3023034 10483947 Alide2_2899 Alicycliphilus denitrificans K601 alanyl-tRNA synthetase YP_004388763.1 3020413 R 596154 CDS YP_004388764.1 330825461 10483948 3023254..3024168 1 NC_015422.1 KEGG: vap:Vapar_5222 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase 3024168 10483948 Alide2_2900 Alicycliphilus denitrificans K601 dihydrodipicolinate synthase YP_004388764.1 3023254 D 596154 CDS YP_004388765.1 330825462 10483949 3024189..3024824 1 NC_015422.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ctt:CtCNB1_4596 tripartite ATP-independent periplasmic; TRAP dicarboxylate transporter subunit DctQ 3024824 10483949 Alide2_2901 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctQ YP_004388765.1 3024189 D 596154 CDS YP_004388766.1 330825463 10483950 3024842..3026107 1 NC_015422.1 KEGG: ctt:CtCNB1_4595 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 3026107 10483950 Alide2_2902 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctM YP_004388766.1 3024842 D 596154 CDS YP_004388767.1 330825464 10483951 3026133..3027119 1 NC_015422.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ctt:CtCNB1_4594 TRAP dicarboxylate transporter, DctP subunit; family 7 extracellular solute-binding protein 3027119 10483951 Alide2_2903 Alicycliphilus denitrificans K601 family 7 extracellular solute-binding protein YP_004388767.1 3026133 D 596154 CDS YP_004388768.1 330825465 10483952 3027178..3028212 1 NC_015422.1 KEGG: bpd:BURPS668_A0565 malate/L-lactate dehydrogenase family protein; PFAM: Malate/L-lactate dehydrogenase; malate dehydrogenase 3028212 10483952 Alide2_2904 Alicycliphilus denitrificans K601 malate dehydrogenase YP_004388768.1 3027178 D 596154 CDS YP_004388769.1 330825466 10483953 3028287..3028961 1 NC_015422.1 KEGG: vap:Vapar_5216 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; GntR family transcriptional regulator 3028961 10483953 Alide2_2905 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004388769.1 3028287 D 596154 CDS YP_004388770.1 330825467 10483954 3028985..3029935 1 NC_015422.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: dia:Dtpsy_1777 pseudouridine synthase; pseudouridine synthase 3029935 10483954 Alide2_2906 Alicycliphilus denitrificans K601 pseudouridine synthase YP_004388770.1 3028985 D 596154 CDS YP_004388771.1 330825468 10483955 complement(3029910..3032615) 1 NC_015422.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dia:Dtpsy_1832 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3032615 10483955 Alide2_2907 Alicycliphilus denitrificans K601 N-acetyltransferase GCN5 YP_004388771.1 3029910 R 596154 CDS YP_004388772.1 330825469 10483956 complement(3032662..3034005) 1 NC_015422.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; KEGG: dia:Dtpsy_1831 3-deoxy-D-manno-octulosonic-acid transferase domain protein; three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 3034005 10483956 Alide2_2908 Alicycliphilus denitrificans K601 three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_004388772.1 3032662 R 596154 CDS YP_004388773.1 330825470 10483957 complement(3034026..3035414) 1 NC_015422.1 KEGG: dia:Dtpsy_1830 phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; phosphoglucomutase 3035414 10483957 Alide2_2909 Alicycliphilus denitrificans K601 phosphoglucomutase YP_004388773.1 3034026 R 596154 CDS YP_004388774.1 330825471 10483958 complement(3035483..3036454) 1 NC_015422.1 KEGG: dac:Daci_0982 hypothetical protein; hypothetical protein 3036454 10483958 Alide2_2910 Alicycliphilus denitrificans K601 hypothetical protein YP_004388774.1 3035483 R 596154 CDS YP_004388775.1 330825472 10483959 complement(3036467..3037441) 1 NC_015422.1 KEGG: vei:Veis_0062 hypothetical protein; hypothetical protein 3037441 10483959 Alide2_2911 Alicycliphilus denitrificans K601 hypothetical protein YP_004388775.1 3036467 R 596154 CDS YP_004388776.1 330825473 10483960 complement(3037536..3038342) 1 NC_015422.1 PFAM: KduI/IolB isomerase; KEGG: rsc:RCFBP_20182 myo-inositol catabolism protein, protein IolB; KduI/IolB isomerase 3038342 10483960 Alide2_2912 Alicycliphilus denitrificans K601 KduI/IolB isomerase YP_004388776.1 3037536 R 596154 CDS YP_004388777.1 330825474 10483961 complement(3038339..3040294) 1 NC_015422.1 KEGG: dac:Daci_0985 ribokinase-like domain-containing protein; PFAM: Protein of unknown function DUF2090; Carbohydrate/purine kinase; 5-dehydro-2-deoxygluconokinase 3040294 10483961 Alide2_2913 Alicycliphilus denitrificans K601 5-dehydro-2-deoxygluconokinase YP_004388777.1 3038339 R 596154 CDS YP_004388778.1 330825475 10483962 3040389..3041261 1 NC_015422.1 PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: dac:Daci_0986 RpiR family transcriptional regulator; RpiR family transcriptional regulator 3041261 10483962 Alide2_2914 Alicycliphilus denitrificans K601 RpiR family transcriptional regulator YP_004388778.1 3040389 D 596154 CDS YP_004388779.1 330825476 10483963 3041323..3042822 1 NC_015422.1 KEGG: ajs:Ajs_2020 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada; PFAM: AlkA, N-terminal; Ada DNA repair, metal-binding; HTH transcriptional regulator, AraC; HhH-GPD domain; SMART: Helix-turn-helix, AraC type, DNA binding domain; HhH-GPD domain; AraC family transcriptional regulator 3042822 10483963 Alide2_2915 Alicycliphilus denitrificans K601 AraC family transcriptional regulator YP_004388779.1 3041323 D 596154 CDS YP_004388780.1 330825477 10483964 3042881..3043408 1 NC_015422.1 KEGG: dia:Dtpsy_1828 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA--protein-cysteine methyltransferase 3043408 10483964 Alide2_2916 Alicycliphilus denitrificans K601 methylated-DNA--protein-cysteine methyltransferase YP_004388780.1 3042881 D 596154 CDS YP_004388781.1 330825478 10483965 3043405..3044328 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_1827 protein of unknown function DUF6 transmembrane; hypothetical protein 3044328 10483965 Alide2_2917 Alicycliphilus denitrificans K601 hypothetical protein YP_004388781.1 3043405 D 596154 CDS YP_004388782.1 330825479 10483966 complement(3044348..3045310) 1 NC_015422.1 KEGG: aav:Aave_3080 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain; Adenylyl cyclase class-3/4/guanylyl cyclase; adenylate/guanylate cyclase 3045310 10483966 Alide2_2918 Alicycliphilus denitrificans K601 adenylate/guanylate cyclase YP_004388782.1 3044348 R 596154 CDS YP_004388783.1 330825480 10483967 complement(3045516..3046487) 1 NC_015422.1 KEGG: dia:Dtpsy_1593 muramoyltetrapeptide carboxypeptidase; PFAM: Peptidase S66, LD-carboxypeptidase A; muramoyltetrapeptide carboxypeptidase 3046487 10483967 Alide2_2919 Alicycliphilus denitrificans K601 muramoyltetrapeptide carboxypeptidase YP_004388783.1 3045516 R 596154 CDS YP_004388784.1 330825481 10483968 complement(3046471..3047547) 1 NC_015422.1 PFAM: CMP/dCMP deaminase, zinc-binding; Alpha/beta hydrolase fold-1; KEGG: ajs:Ajs_2282 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase zinc-binding protein 3047547 10483968 Alide2_2920 Alicycliphilus denitrificans K601 CMP/dCMP deaminase zinc-binding protein YP_004388784.1 3046471 R 596154 CDS YP_004388785.1 330825482 10483969 complement(3047595..3048227) 1 NC_015422.1 PFAM: Negative transcriptional regulator; KEGG: vap:Vapar_2794 FMN-binding negative transcriptional regulator; FMN-binding negative transcriptional regulator 3048227 10483969 Alide2_2921 Alicycliphilus denitrificans K601 FMN-binding negative transcriptional regulator YP_004388785.1 3047595 R 596154 CDS YP_004388786.1 330825483 10483970 3048280..3050253 1 NC_015422.1 PFAM: Peptidase U32; KEGG: dia:Dtpsy_1589 peptidase U32; peptidase U32 3050253 10483970 Alide2_2922 Alicycliphilus denitrificans K601 peptidase U32 YP_004388786.1 3048280 D 596154 CDS YP_004388787.1 330825484 10483971 3050339..3051616 1 NC_015422.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: dia:Dtpsy_1588 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; O-acetylhomoserine/O-acetylserine sulfhydrylase 3051616 10483971 Alide2_2923 Alicycliphilus denitrificans K601 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_004388787.1 3050339 D 596154 CDS YP_004388788.1 330825485 10483972 complement(3051666..3052961) 1 NC_015422.1 KEGG: dia:Dtpsy_1587 protein of unknown function DUF323; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor; hypothetical protein 3052961 10483972 Alide2_2924 Alicycliphilus denitrificans K601 hypothetical protein YP_004388788.1 3051666 R 596154 CDS YP_004388789.1 330825486 10483973 complement(3052975..3053949) 1 NC_015422.1 KEGG: dia:Dtpsy_1586 methyltransferase; TIGRFAM: Methyltransferase-like; PFAM: Protein of unknown function DUF2260; methyltransferase 3053949 10483973 Alide2_2925 Alicycliphilus denitrificans K601 methyltransferase YP_004388789.1 3052975 R 596154 CDS YP_004388790.1 330825487 10483974 complement(3054199..3054789) 1 NC_015422.1 KEGG: dia:Dtpsy_1585 OmpW family protein; manually curated; PFAM: Outer membrane protein, OmpW; OmpW family protein 3054789 10483974 Alide2_2926 Alicycliphilus denitrificans K601 OmpW family protein YP_004388790.1 3054199 R 596154 CDS YP_004388791.1 330825488 10483975 complement(3054934..3055926) 1 NC_015422.1 PFAM: Protein of unknown function DUF808; KEGG: ajs:Ajs_2290 hypothetical protein; hypothetical protein 3055926 10483975 Alide2_2927 Alicycliphilus denitrificans K601 hypothetical protein YP_004388791.1 3054934 R 596154 CDS YP_004388792.1 330825489 10483976 complement(3056030..3060049) 1 NC_015422.1 TIGRFAM: Phosphoribosylformylglycinamidine synthase; KEGG: dia:Dtpsy_1582 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; phosphoribosylformylglycinamidine synthase 3060049 10483976 Alide2_2928 Alicycliphilus denitrificans K601 phosphoribosylformylglycinamidine synthase YP_004388792.1 3056030 R 596154 CDS YP_004388793.1 330825490 10483977 3060230..3061048 1 NC_015422.1 TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: dia:Dtpsy_1581 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; methionine aminopeptidase 3061048 10483977 Alide2_2929 Alicycliphilus denitrificans K601 methionine aminopeptidase YP_004388793.1 3060230 D 596154 CDS YP_004388794.1 330825491 10483978 3061096..3063720 1 NC_015422.1 KEGG: dia:Dtpsy_1580 PII uridylyl-transferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Domain of unknown function DUF294, nucleotidyltransferase putative; Metal-dependent phosphohydrolase, HD subdomain; Amino acid-binding ACT; TIGRFAM: Protein-PII uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD domain; UTP-GlnB uridylyltransferase, GlnD 3063720 10483978 Alide2_2930 Alicycliphilus denitrificans K601 UTP-GlnB uridylyltransferase, GlnD YP_004388794.1 3061096 D 596154 CDS YP_004388795.1 330825492 10483979 complement(3063730..3065208) 1 NC_015422.1 KEGG: ctt:CtCNB1_3177 uracil-xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease; xanthine permease 3065208 10483979 Alide2_2931 Alicycliphilus denitrificans K601 xanthine permease YP_004388795.1 3063730 R 596154 CDS YP_004388796.1 330825493 10483980 complement(3065440..3065979) 1 NC_015422.1 TIGRFAM: Formylmethionine deformylase; KEGG: dac:Daci_4855 peptide deformylase; PFAM: Formylmethionine deformylase; peptide deformylase 3065979 10483980 Alide2_2932 Alicycliphilus denitrificans K601 peptide deformylase YP_004388796.1 3065440 R 596154 CDS YP_004388797.1 330825494 10483981 3066073..3066492 1 NC_015422.1 PFAM: Protein of unknown function DUF454; KEGG: ajs:Ajs_2296 hypothetical protein; hypothetical protein 3066492 10483981 Alide2_2933 Alicycliphilus denitrificans K601 hypothetical protein YP_004388797.1 3066073 D 596154 CDS YP_004388798.1 330825495 10483985 3067326..3067652 1 NC_015422.1 PFAM: Protein of unknown function DUF3423; hypothetical protein 3067652 10483985 Alide2_2935 Alicycliphilus denitrificans K601 hypothetical protein YP_004388798.1 3067326 D 596154 CDS YP_004388799.1 330825496 10483986 3067654..3068256 1 NC_015422.1 KEGG: pzu:PHZ_c2128 hypothetical protein; hypothetical protein 3068256 10483986 Alide2_2936 Alicycliphilus denitrificans K601 hypothetical protein YP_004388799.1 3067654 D 596154 CDS YP_004388800.1 330825497 10483987 complement(3068541..3069800) 1 NC_015422.1 TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; KEGG: aav:Aave_2572 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; NADP-dependent isocitrate dehydrogenase 3069800 10483987 Alide2_2937 Alicycliphilus denitrificans K601 NADP-dependent isocitrate dehydrogenase YP_004388800.1 3068541 R 596154 CDS YP_004388801.1 330825498 10483988 3070323..3070796 1 NC_015422.1 PFAM: Protein of unknown function DUF192; KEGG: dia:Dtpsy_1560 protein of unknown function DUF192; hypothetical protein 3070796 10483988 Alide2_2938 Alicycliphilus denitrificans K601 hypothetical protein YP_004388801.1 3070323 D 596154 CDS YP_004388802.1 330825499 10483989 complement(3070866..3073103) 1 NC_015422.1 TIGRFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; KEGG: ajs:Ajs_2300 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; NADP-dependent isocitrate dehydrogenase 3073103 10483989 Alide2_2939 Alicycliphilus denitrificans K601 NADP-dependent isocitrate dehydrogenase YP_004388802.1 3070866 R 596154 CDS YP_004388803.1 330825500 10483990 complement(3073403..3073984) 1 NC_015422.1 KEGG: ajs:Ajs_2301 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; Superoxide dismutase 3073984 10483990 Alide2_2940 Alicycliphilus denitrificans K601 Superoxide dismutase YP_004388803.1 3073403 R 596154 CDS YP_004388804.1 330825501 10483991 complement(3074127..3075464) 1 NC_015422.1 PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exonuclease VII, large subunit; KEGG: ajs:Ajs_2302 exodeoxyribonuclease VII large subunit; exodeoxyribonuclease 7 large subunit 3075464 10483991 Alide2_2941 Alicycliphilus denitrificans K601 exodeoxyribonuclease 7 large subunit YP_004388804.1 3074127 R 596154 CDS YP_004388805.1 330825502 10483992 3075827..3076465 1 NC_015422.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_1556 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3076465 10483992 Alide2_2942 Alicycliphilus denitrificans K601 MotA/TolQ/ExbB proton channel YP_004388805.1 3075827 D 596154 CDS YP_004388806.1 330825503 10483993 3076473..3076898 1 NC_015422.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dia:Dtpsy_1555 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 3076898 10483993 Alide2_2943 Alicycliphilus denitrificans K601 biopolymer transport protein ExbD/TolR YP_004388806.1 3076473 D 596154 CDS YP_004388807.1 330825504 10483994 3076903..3077901 1 NC_015422.1 TIGRFAM: Tetraacyldisaccharide 4'-kinase; KEGG: ajs:Ajs_2305 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; tetraacyldisaccharide 4'-kinase 3077901 10483994 Alide2_2944 Alicycliphilus denitrificans K601 tetraacyldisaccharide 4'-kinase YP_004388807.1 3076903 D 596154 CDS YP_004388808.1 330825505 10483995 3077915..3078097 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0434/Trm112; KEGG: dia:Dtpsy_1553 protein of unknown function DUF343; hypothetical protein 3078097 10483995 Alide2_2945 Alicycliphilus denitrificans K601 hypothetical protein YP_004388808.1 3077915 D 596154 CDS YP_004388809.1 330825506 10483996 3078094..3078879 1 NC_015422.1 PFAM: Acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: ajs:Ajs_2307 3-deoxy-D-manno-octulosonate cytidylyltransferase; 3-deoxy-manno-octulosonate cytidylyltransferase 3078879 10483996 Alide2_2946 Alicycliphilus denitrificans K601 3-deoxy-manno-octulosonate cytidylyltransferase YP_004388809.1 3078094 D 596154 CDS YP_004388810.1 330825507 10483997 3078978..3079634 1 NC_015422.1 KEGG: dia:Dtpsy_1551 adenylate kinase; TIGRFAM: Adenylate kinase, subfamily; PFAM: Adenylate kinase; Adenylate kinase, active site lid domain; adenylate kinase 3079634 10483997 Alide2_2947 Alicycliphilus denitrificans K601 adenylate kinase YP_004388810.1 3078978 D 596154 CDS YP_004388811.1 330825508 10483998 complement(3079707..3080669) 1 NC_015422.1 PFAM: Asparaginase/glutaminase; KEGG: dia:Dtpsy_1550 asparaginase; SMART: Asparaginase/glutaminase; asparaginase 3080669 10483998 Alide2_2948 Alicycliphilus denitrificans K601 asparaginase YP_004388811.1 3079707 R 596154 CDS YP_004388812.1 330825509 10483999 3080749..3081423 1 NC_015422.1 KEGG: dia:Dtpsy_1549 LexA repressor; TIGRFAM: Peptidase S24, LexA repressor; PFAM: LexA, DNA-binding domain; Peptidase S24/S26A/S26B, conserved region; SOS-response transcriptional repressor, LexA 3081423 10483999 Alide2_2949 Alicycliphilus denitrificans K601 SOS-response transcriptional repressor, LexA YP_004388812.1 3080749 D 596154 CDS YP_004388813.1 330825510 10484000 3081578..3081922 1 NC_015422.1 KEGG: ajs:Ajs_2311 hypothetical protein; hypothetical protein 3081922 10484000 Alide2_2950 Alicycliphilus denitrificans K601 hypothetical protein YP_004388813.1 3081578 D 596154 CDS YP_004388814.1 330825511 10484001 complement(3081930..3085910) 1 NC_015422.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated domain; Helicase, C-terminal; Domain of unknown function DUF1605; KEGG: dia:Dtpsy_1546 ATP-dependent helicase HrpA; SMART: Helicase-associated domain; DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; Helicase, C-terminal; ATP-dependent helicase HrpA 3085910 10484001 Alide2_2951 Alicycliphilus denitrificans K601 ATP-dependent helicase HrpA YP_004388814.1 3081930 R 596154 CDS YP_004388815.1 330825512 10484002 complement(3085966..3087159) 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: ajs:Ajs_2317 acetyl-CoA acetyltransferases; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 3087159 10484002 Alide2_2952 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004388815.1 3085966 R 596154 CDS YP_004388816.1 330825513 10484003 complement(3087156..3088631) 1 NC_015422.1 KEGG: dia:Dtpsy_1541 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 3088631 10484003 Alide2_2953 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004388816.1 3087156 R 596154 CDS YP_004388817.1 330825514 10484004 complement(3088628..3089212) 1 NC_015422.1 PFAM: BioY protein; KEGG: dia:Dtpsy_1540 BioY protein; BioY protein 3089212 10484004 Alide2_2954 Alicycliphilus denitrificans K601 BioY protein YP_004388817.1 3088628 R 596154 CDS YP_004388818.1 330825515 10484005 complement(3089250..3089843) 1 NC_015422.1 PFAM: Cobalt transport protein; KEGG: ajs:Ajs_2320 cobalt transport protein; ABC transporter permease 3089843 10484005 Alide2_2955 Alicycliphilus denitrificans K601 ABC transporter permease YP_004388818.1 3089250 R 596154 CDS YP_004388819.1 330825516 10484006 complement(3089862..3090635) 1 NC_015422.1 KEGG: dia:Dtpsy_1538 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 3090635 10484006 Alide2_2956 Alicycliphilus denitrificans K601 ABC transporter YP_004388819.1 3089862 R 596154 CDS YP_004388820.1 330825517 10484007 3091066..3091644 1 NC_015422.1 KEGG: bte:BTH_II1296 hypothetical protein; hypothetical protein 3091644 10484007 Alide2_2957 Alicycliphilus denitrificans K601 hypothetical protein YP_004388820.1 3091066 D 596154 CDS YP_004388821.1 330825518 10484008 3091691..3092125 1 NC_015422.1 KEGG: gdj:Gdia_1658 hypothetical protein; hypothetical protein 3092125 10484008 Alide2_2958 Alicycliphilus denitrificans K601 hypothetical protein YP_004388821.1 3091691 D 596154 CDS YP_004388822.1 330825519 10484009 3092179..3092628 1 NC_015422.1 TIGRFAM: Glyoxalase I; KEGG: dia:Dtpsy_1870 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 3092628 10484009 Alide2_2959 Alicycliphilus denitrificans K601 lactoylglutathione lyase YP_004388822.1 3092179 D 596154 CDS YP_004388823.1 330825520 10484010 3092798..3093559 1 NC_015422.1 KEGG: vap:Vapar_2120 hypothetical protein; hypothetical protein 3093559 10484010 Alide2_2960 Alicycliphilus denitrificans K601 hypothetical protein YP_004388823.1 3092798 D 596154 CDS YP_004388824.1 330825521 10484011 3093556..3093756 1 NC_015422.1 hypothetical protein 3093756 10484011 Alide2_2961 Alicycliphilus denitrificans K601 hypothetical protein YP_004388824.1 3093556 D 596154 CDS YP_004388825.1 330825522 10484012 complement(3093990..3094493) 1 NC_015422.1 manually curated; KEGG: bcm:Bcenmc03_6935 hypothetical protein; hypothetical protein 3094493 10484012 Alide2_2962 Alicycliphilus denitrificans K601 hypothetical protein YP_004388825.1 3093990 R 596154 CDS YP_004388826.1 330825523 10484013 complement(3094932..3095735) 1 NC_015422.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 3095735 10484013 Alide2_2963 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004388826.1 3094932 R 596154 CDS YP_004388827.1 330825524 10484014 complement(3095725..3097251) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit 3097251 10484014 Alide2_2964 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004388827.1 3095725 R 596154 CDS YP_004388828.1 330825525 10484015 3097781..3098095 1 NC_015422.1 PFAM: Protein of unknown function DUF736; KEGG: dac:Daci_0462 hypothetical protein; hypothetical protein 3098095 10484015 Alide2_2965 Alicycliphilus denitrificans K601 hypothetical protein YP_004388828.1 3097781 D 596154 CDS YP_004388829.1 330825526 10484016 complement(3098450..3098740) 1 NC_015422.1 KEGG: dac:Daci_0461 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 3098740 10484016 Alide2_2966 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004388829.1 3098450 R 596154 CDS YP_004388830.1 330825527 10484017 3098952..3099299 1 NC_015422.1 KEGG: tgr:Tgr7_1875 putative lipoprotein; hypothetical protein 3099299 10484017 Alide2_2967 Alicycliphilus denitrificans K601 hypothetical protein YP_004388830.1 3098952 D 596154 CDS YP_004388831.1 330825528 10484018 3099593..3100342 1 NC_015422.1 PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein; hypothetical protein 3100342 10484018 Alide2_2968 Alicycliphilus denitrificans K601 hypothetical protein YP_004388831.1 3099593 D 596154 CDS YP_004388832.1 330825529 10484019 3100426..3100707 1 NC_015422.1 KEGG: rpi:Rpic_2619 hypothetical protein; hypothetical protein 3100707 10484019 Alide2_2969 Alicycliphilus denitrificans K601 hypothetical protein YP_004388832.1 3100426 D 596154 CDS YP_004388833.1 330825530 10484020 3100734..3101591 1 NC_015422.1 PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein; replication initiator protein A 3101591 10484020 Alide2_2970 Alicycliphilus denitrificans K601 replication initiator protein A YP_004388833.1 3100734 D 596154 CDS YP_004388834.1 330825531 10484021 3101881..3102519 1 NC_015422.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dac:Daci_2720 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase 3102519 10484021 Alide2_2971 Alicycliphilus denitrificans K601 Cobyrinic acid ac-diamide synthase YP_004388834.1 3101881 D 596154 CDS YP_004388835.1 330825532 10484022 3102516..3102800 1 NC_015422.1 KEGG: bpt:Bpet2187 hypothetical protein; hypothetical protein 3102800 10484022 Alide2_2972 Alicycliphilus denitrificans K601 hypothetical protein YP_004388835.1 3102516 D 596154 CDS YP_004388836.1 330825533 10484023 3102797..3103342 1 NC_015422.1 KEGG: rme:Rmet_1257 hypothetical protein; hypothetical protein 3103342 10484023 Alide2_2973 Alicycliphilus denitrificans K601 hypothetical protein YP_004388836.1 3102797 D 596154 CDS YP_004388837.1 330825534 10484024 3103339..3103938 1 NC_015422.1 PFAM: Peptidase S26, conserved region; KEGG: dia:Dtpsy_1292 TraF peptidase. Serine peptidase. MEROPS family S26C; peptidase S26 3103938 10484024 Alide2_2974 Alicycliphilus denitrificans K601 peptidase S26 YP_004388837.1 3103339 D 596154 CDS YP_004388838.1 330825535 10484025 3104399..3106381 1 NC_015422.1 KEGG: dac:Daci_0453 hypothetical protein; hypothetical protein 3106381 10484025 Alide2_2975 Alicycliphilus denitrificans K601 hypothetical protein YP_004388838.1 3104399 D 596154 CDS YP_004388839.1 330825536 10484026 complement(3106387..3107400) 1 NC_015422.1 PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase; ferrochelatase 3107400 10484026 Alide2_2976 Alicycliphilus denitrificans K601 ferrochelatase YP_004388839.1 3106387 R 596154 CDS YP_004388840.1 330825537 10484027 complement(3107475..3108035) 1 NC_015422.1 PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: mxa:MXAN_6138 riboflavin biosynthesis protein RibD domain-containing protein; deaminase/reductase domain-containing protein 3108035 10484027 Alide2_2977 Alicycliphilus denitrificans K601 deaminase/reductase domain-containing protein YP_004388840.1 3107475 R 596154 CDS YP_004388841.1 330825538 10484028 complement(3108094..3110652) 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0753; KEGG: mei:Msip34_2093 hypothetical protein; hypothetical protein 3110652 10484028 Alide2_2978 Alicycliphilus denitrificans K601 hypothetical protein YP_004388841.1 3108094 R 596154 CDS YP_004388842.1 330825539 10484029 complement(3110679..3112244) 1 NC_015422.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: mei:Msip34_2092 NADH dehydrogenase subunit L; NADH/ubiquinone/plastoquinone 3112244 10484029 Alide2_2979 Alicycliphilus denitrificans K601 NADH/ubiquinone/plastoquinone YP_004388842.1 3110679 R 596154 CDS YP_004388843.1 330825540 10484030 3112344..3113261 1 NC_015422.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: mep:MPQ_2042 transcriptional regulator, LysR family; LysR family transcriptional regulator 3113261 10484030 Alide2_2980 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388843.1 3112344 D 596154 CDS YP_004388844.1 330825541 10484031 complement(3113406..3114386) 1 NC_015422.1 KEGG: lch:Lcho_3347 integral membrane protein TerC; TIGRFAM: Integral membrane protein TerC, riboswitch-linked; PFAM: Integral membrane protein TerC; TerC family integral membrane protein 3114386 10484031 Alide2_2981 Alicycliphilus denitrificans K601 TerC family integral membrane protein YP_004388844.1 3113406 R 596154 CDS YP_004388845.1 330825542 10484032 complement(3114442..3114849) 1 NC_015422.1 KEGG: lch:Lcho_3349 hypothetical protein; hypothetical protein 3114849 10484032 Alide2_2982 Alicycliphilus denitrificans K601 hypothetical protein YP_004388845.1 3114442 R 596154 CDS YP_004388846.1 330825543 10484033 complement(3114915..3115145) 1 NC_015422.1 KEGG: rme:Rmet_5308 hypothetical protein; hypothetical protein 3115145 10484033 Alide2_2983 Alicycliphilus denitrificans K601 hypothetical protein YP_004388846.1 3114915 R 596154 CDS YP_004388847.1 330825544 10484034 3115266..3116192 1 NC_015422.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: tin:Tint_2185 transcriptional regulator, LysR family; LysR family transcriptional regulator 3116192 10484034 Alide2_2984 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388847.1 3115266 D 596154 CDS YP_004388848.1 330825545 10484035 3116229..3116909 1 NC_015422.1 KEGG: reu:Reut_A0042 glutathione peroxidase; manually curated; PFAM: Glutathione peroxidase; glutathione peroxidase 3116909 10484035 Alide2_2985 Alicycliphilus denitrificans K601 glutathione peroxidase YP_004388848.1 3116229 D 596154 CDS YP_004388849.1 330825546 10484036 complement(3116978..3117880) 1 NC_015422.1 PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: bav:BAV2083 hypothetical protein; NAD-dependent epimerase/dehydratase 3117880 10484036 Alide2_2986 Alicycliphilus denitrificans K601 NAD-dependent epimerase/dehydratase YP_004388849.1 3116978 R 596154 CDS YP_004388850.1 330825547 10484037 complement(3117910..3118608) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1994 hypothetical protein; short-chain dehydrogenase/reductase SDR 3118608 10484037 Alide2_2987 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004388850.1 3117910 R 596154 CDS YP_004388851.1 330825548 10484038 complement(3118633..3120171) 1 NC_015422.1 PFAM: Deoxyribodipyrimidine photolyase-related protein; KEGG: ctt:CtCNB1_1993 deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein 3120171 10484038 Alide2_2988 Alicycliphilus denitrificans K601 deoxyribodipyrimidine photolyase-like protein YP_004388851.1 3118633 R 596154 CDS YP_004388852.1 330825549 10484039 complement(3120400..3121326) 1 NC_015422.1 KEGG: reu:Reut_C6236 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; beta-Ig-H3/fasciclin 3121326 10484039 Alide2_2989 Alicycliphilus denitrificans K601 beta-Ig-H3/fasciclin YP_004388852.1 3120400 R 596154 CDS YP_004388853.1 330825550 10484040 complement(3121434..3122984) 1 NC_015422.1 PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; KEGG: tmz:Tmz1t_3951 deoxyribodipyrimidine photo-lyase; DNA photolyase FAD-binding protein 3122984 10484040 Alide2_2990 Alicycliphilus denitrificans K601 DNA photolyase FAD-binding protein YP_004388853.1 3121434 R 596154 CDS YP_004388854.1 330825551 10484041 complement(3122998..3123600) 1 NC_015422.1 PFAM: Lipocalin-like; KEGG: reu:Reut_C6237 outer membrane lipoprotein, lipocalin; lipocalin family protein 3123600 10484041 Alide2_2991 Alicycliphilus denitrificans K601 lipocalin family protein YP_004388854.1 3122998 R 596154 CDS YP_004388855.1 330825552 10484042 complement(3123619..3124593) 1 NC_015422.1 KEGG: reu:Reut_C6238 regulatory protein, MerR; PFAM: Cobalamin (vitamin B12)-binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; cobalamin B12-binding domain-containing protein 3124593 10484042 Alide2_2992 Alicycliphilus denitrificans K601 cobalamin B12-binding domain-containing protein YP_004388855.1 3123619 R 596154 CDS YP_004388856.1 330825553 10484043 3124712..3126016 1 NC_015422.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: bav:BAV2082 dehydrogenase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3126016 10484043 Alide2_2993 Alicycliphilus denitrificans K601 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004388856.1 3124712 D 596154 CDS YP_004388857.1 330825554 10484044 3126013..3126837 1 NC_015422.1 PFAM: Protein of unknown function DUF1365; KEGG: bav:BAV2081 hypothetical protein; hypothetical protein 3126837 10484044 Alide2_2994 Alicycliphilus denitrificans K601 hypothetical protein YP_004388857.1 3126013 D 596154 CDS YP_004388858.1 330825555 10484045 3126840..3128060 1 NC_015422.1 KEGG: dia:Dtpsy_2396 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase; cyclopropane-fatty-acyl-phospholipid synthase 3128060 10484045 Alide2_2995 Alicycliphilus denitrificans K601 cyclopropane-fatty-acyl-phospholipid synthase YP_004388858.1 3126840 D 596154 CDS YP_004388859.1 330825556 10484046 3128159..3128686 1 NC_015422.1 KEGG: dia:Dtpsy_2394 hypothetical protein; hypothetical protein 3128686 10484046 Alide2_2996 Alicycliphilus denitrificans K601 hypothetical protein YP_004388859.1 3128159 D 596154 CDS YP_004388860.1 330825557 10484047 3128683..3130002 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bav:BAV2078 transporter; major facilitator superfamily protein 3130002 10484047 Alide2_2997 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004388860.1 3128683 D 596154 CDS YP_004388861.1 330825558 10484048 3129999..3130535 1 NC_015422.1 KEGG: dia:Dtpsy_2392 putative lipoprotein; hypothetical protein 3130535 10484048 Alide2_2998 Alicycliphilus denitrificans K601 hypothetical protein YP_004388861.1 3129999 D 596154 CDS YP_004388862.1 330825559 10484049 3130540..3131322 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bav:BAV2076 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3131322 10484049 Alide2_2999 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004388862.1 3130540 D 596154 CDS YP_004388863.1 330825560 10484050 3131325..3131840 1 NC_015422.1 KEGG: bav:BAV2075 isomerase; isomerase 3131840 10484050 Alide2_3000 Alicycliphilus denitrificans K601 isomerase YP_004388863.1 3131325 D 596154 CDS YP_004388864.1 330825561 10484051 3131818..3132507 1 NC_015422.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: ajs:Ajs_1800 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein 3132507 10484051 Alide2_3001 Alicycliphilus denitrificans K601 glutathione S-transferase domain-containing protein YP_004388864.1 3131818 D 596154 CDS YP_004388865.1 330825562 10484052 3132562..3134025 1 NC_015422.1 KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; deoxyribodipyrimidine photo-lyase 3134025 10484052 Alide2_3002 Alicycliphilus denitrificans K601 deoxyribodipyrimidine photo-lyase YP_004388865.1 3132562 D 596154 CDS YP_004388866.1 330825563 10484053 3134038..3134568 1 NC_015422.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: dia:Dtpsy_3510 transcriptional regulator, LysR family; LysR family transcriptional regulator 3134568 10484053 Alide2_3003 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388866.1 3134038 D 596154 CDS YP_004388867.1 330825564 10484054 3134628..3136154 1 NC_015422.1 KEGG: bvi:Bcep1808_2622 integrase catalytic subunit; integrase catalytic subunit 3136154 10484054 Alide2_3004 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004388867.1 3134628 D 596154 CDS YP_004388868.1 330825565 10484055 3136147..3136962 1 NC_015422.1 KEGG: mpt:Mpe_A2996 putative transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 3136962 10484055 Alide2_3005 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004388868.1 3136147 D 596154 CDS YP_004388869.1 330825566 10484056 complement(3137029..3137955) 1 NC_015422.1 PFAM: Protein of unknown function DUF1016; KEGG: pau:PA14_31270 hypothetical protein; hypothetical protein 3137955 10484056 Alide2_3006 Alicycliphilus denitrificans K601 hypothetical protein YP_004388869.1 3137029 R 596154 CDS YP_004388870.1 330825567 10484057 complement(3137952..3139157) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein; integrase family protein 3139157 10484057 Alide2_3007 Alicycliphilus denitrificans K601 integrase family protein YP_004388870.1 3137952 R 596154 CDS YP_004388871.1 330825568 10484058 3139389..3140294 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bpt:Bpet1402 transcriptional regulator CatR; LysR family transcriptional regulator 3140294 10484058 Alide2_3008 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388871.1 3139389 D 596154 CDS YP_004388872.1 330825569 10484059 complement(3140359..3140997) 1 NC_015422.1 TIGRFAM: KDPG/KHG aldolase; KEGG: ajs:Ajs_2048 2-keto-3-deoxy-phosphogluconate aldolase; PFAM: KDPG/KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 3140997 10484059 Alide2_3009 Alicycliphilus denitrificans K601 2-dehydro-3-deoxyphosphogluconate aldolase YP_004388872.1 3140359 R 596154 CDS YP_004388873.1 330825570 10484060 complement(3140988..3142805) 1 NC_015422.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: ajs:Ajs_2049 phosphogluconate dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; 6-phosphogluconate dehydratase 3142805 10484060 Alide2_3010 Alicycliphilus denitrificans K601 6-phosphogluconate dehydratase YP_004388873.1 3140988 R 596154 CDS YP_004388874.1 330825571 10484061 complement(3142932..3143942) 1 NC_015422.1 KEGG: dia:Dtpsy_1873 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; TRAP dicarboxylate transporter subunit DctP 3143942 10484061 Alide2_3011 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctP YP_004388874.1 3142932 R 596154 CDS YP_004388875.1 330825572 10484062 complement(3143999..3145279) 1 NC_015422.1 KEGG: dia:Dtpsy_1874 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 3145279 10484062 Alide2_3012 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctM YP_004388875.1 3143999 R 596154 CDS YP_004388876.1 330825573 10484063 complement(3145290..3145811) 1 NC_015422.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dia:Dtpsy_1875 tripartite ATP-independent periplasmic transporter DctQ component; TRAP dicarboxylate transporter subunit DctQ 3145811 10484063 Alide2_3013 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctQ YP_004388876.1 3145290 R 596154 CDS YP_004388877.1 330825574 10484064 complement(3145808..3146362) 1 NC_015422.1 PFAM: Shikimate kinase; manually curated; KEGG: ajs:Ajs_2053 carbohydrate kinase; TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase; thermoresistant glucokinase family carbohydrate kinase 3146362 10484064 Alide2_3014 Alicycliphilus denitrificans K601 thermoresistant glucokinase family carbohydrate kinase YP_004388877.1 3145808 R 596154 CDS YP_004388878.1 330825575 10484065 3146567..3147592 1 NC_015422.1 KEGG: ajs:Ajs_2054 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; lacI family transcriptional regulator 3147592 10484065 Alide2_3015 Alicycliphilus denitrificans K601 lacI family transcriptional regulator YP_004388878.1 3146567 D 596154 CDS YP_004388879.1 330825576 10484066 complement(3147638..3149986) 1 NC_015422.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: dia:Dtpsy_1896 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core; ATP-dependent Clp protease ATP-binding protein ClpA 3149986 10484066 Alide2_3016 Alicycliphilus denitrificans K601 ATP-dependent Clp protease ATP-binding protein ClpA YP_004388879.1 3147638 R 596154 CDS YP_004388880.1 330825577 10484067 complement(3150046..3150408) 1 NC_015422.1 KEGG: dia:Dtpsy_1897 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core; ATP-dependent Clp protease adapter protein clpS 3150408 10484067 Alide2_3017 Alicycliphilus denitrificans K601 ATP-dependent Clp protease adapter protein clpS YP_004388880.1 3150046 R 596154 CDS YP_004388881.1 330825578 10484068 complement(3150468..3154016) 1 NC_015422.1 SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dia:Dtpsy_1898 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA polymerase III subunit alpha 3154016 10484068 Alide2_3018 Alicycliphilus denitrificans K601 DNA polymerase III subunit alpha YP_004388881.1 3150468 R 596154 CDS YP_004388882.1 330825579 10484069 3154145..3154942 1 NC_015422.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: dia:Dtpsy_1899 outer membrane assembly lipoprotein YfiO; outer membrane assembly lipoprotein YfiO 3154942 10484069 Alide2_3019 Alicycliphilus denitrificans K601 outer membrane assembly lipoprotein YfiO YP_004388882.1 3154145 D 596154 CDS YP_004388883.1 330825580 10484070 complement(3154905..3156977) 1 NC_015422.1 SMART: Helicase, ATP-dependent, c2 type; KEGG: ajs:Ajs_1828 helicase C2; helicase c2 3156977 10484070 Alide2_3020 Alicycliphilus denitrificans K601 helicase c2 YP_004388883.1 3154905 R 596154 CDS YP_004388884.1 330825581 10484071 3157095..3157898 1 NC_015422.1 KEGG: dia:Dtpsy_1901 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like; protein serine/threonine phosphatase 3157898 10484071 Alide2_3021 Alicycliphilus denitrificans K601 protein serine/threonine phosphatase YP_004388884.1 3157095 D 596154 CDS YP_004388885.1 330825582 10484072 complement(3157902..3158597) 1 NC_015422.1 KEGG: ajs:Ajs_1826 hypothetical protein; hypothetical protein 3158597 10484072 Alide2_3022 Alicycliphilus denitrificans K601 hypothetical protein YP_004388885.1 3157902 R 596154 CDS YP_004388886.1 330825583 10484073 complement(3158594..3159691) 1 NC_015422.1 PFAM: ATPase, AFG1-like; KEGG: dia:Dtpsy_1903 AFG1-family ATPase; AFG1 family ATPase 3159691 10484073 Alide2_3023 Alicycliphilus denitrificans K601 AFG1 family ATPase YP_004388886.1 3158594 R 596154 CDS YP_004388887.1 330825584 10484074 complement(3159768..3161195) 1 NC_015422.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: ajs:Ajs_1824 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; dihydrolipoamide dehydrogenase 3161195 10484074 Alide2_3024 Alicycliphilus denitrificans K601 dihydrolipoamide dehydrogenase YP_004388887.1 3159768 R 596154 CDS YP_004388888.1 330825585 10484075 complement(3161281..3162537) 1 NC_015422.1 TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: dia:Dtpsy_1905 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 3162537 10484075 Alide2_3025 Alicycliphilus denitrificans K601 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_004388888.1 3161281 R 596154 CDS YP_004388889.1 330825586 10484076 complement(3162590..3165466) 1 NC_015422.1 SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: ajs:Ajs_1822 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; 2-oxoglutarate dehydrogenase, E1 subunit 3165466 10484076 Alide2_3026 Alicycliphilus denitrificans K601 2-oxoglutarate dehydrogenase, E1 subunit YP_004388889.1 3162590 R 596154 CDS YP_004388890.1 330825587 10484077 3165672..3166730 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0118; KEGG: dia:Dtpsy_1907 protein of unknown function UPF0118; hypothetical protein 3166730 10484077 Alide2_3027 Alicycliphilus denitrificans K601 hypothetical protein YP_004388890.1 3165672 D 596154 CDS YP_004388891.1 330825588 10484078 complement(3166798..3167781) 1 NC_015422.1 KEGG: dia:Dtpsy_1908 hypothetical protein; hypothetical protein 3167781 10484078 Alide2_3028 Alicycliphilus denitrificans K601 hypothetical protein YP_004388891.1 3166798 R 596154 CDS YP_004388892.1 330825589 10484079 complement(3167832..3168194) 1 NC_015422.1 KEGG: dia:Dtpsy_1909 hypothetical protein; hypothetical protein 3168194 10484079 Alide2_3029 Alicycliphilus denitrificans K601 hypothetical protein YP_004388892.1 3167832 R 596154 CDS YP_004388893.1 330825590 10484080 complement(3168209..3169561) 1 NC_015422.1 PFAM: Protein of unknown function DUF1446; KEGG: dia:Dtpsy_1910 protein of unknown function DUF1446; hypothetical protein 3169561 10484080 Alide2_3030 Alicycliphilus denitrificans K601 hypothetical protein YP_004388893.1 3168209 R 596154 CDS YP_004388894.1 330825591 10484081 3169654..3170559 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_1817 LysR family transcriptional regulator; LysR family transcriptional regulator 3170559 10484081 Alide2_3031 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388894.1 3169654 D 596154 CDS YP_004388895.1 330825592 10484082 3170697..3171563 1 NC_015422.1 PFAM: UspA; KEGG: ajs:Ajs_1816 UspA domain-containing protein; UspA domain-containing protein 3171563 10484082 Alide2_3032 Alicycliphilus denitrificans K601 UspA domain-containing protein YP_004388895.1 3170697 D 596154 CDS YP_004388896.1 330825593 10484083 complement(3171583..3173220) 1 NC_015422.1 PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: dia:Dtpsy_1915 ABC transporter related; SMART: ATPase, AAA+ type, core; Nickel-transporting ATPase, polyamine-transporting ATPase 3173220 10484083 Alide2_3033 Alicycliphilus denitrificans K601 Nickel-transporting ATPase, polyamine-transporting ATPase YP_004388896.1 3171583 R 596154 CDS YP_004388897.1 330825594 10484084 complement(3173222..3174262) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; Mitochondrial distribution and morphology protein family 31/32, fungi; KEGG: dia:Dtpsy_1916 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 3174262 10484084 Alide2_3034 Alicycliphilus denitrificans K601 ABC transporter permease YP_004388897.1 3173222 R 596154 CDS YP_004388898.1 330825595 10484085 complement(3174246..3175283) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1811 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 3175283 10484085 Alide2_3035 Alicycliphilus denitrificans K601 ABC transporter permease YP_004388898.1 3174246 R 596154 CDS YP_004388899.1 330825596 10484086 complement(3175301..3175762) 1 NC_015422.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: dia:Dtpsy_2487 putative protein-S-isoprenylcysteine methyltransferase-like protein; isoprenylcysteine carboxyl methyltransferase 3175762 10484086 Alide2_3036 Alicycliphilus denitrificans K601 isoprenylcysteine carboxyl methyltransferase YP_004388899.1 3175301 R 596154 CDS YP_004388900.1 330825597 10484087 complement(3175808..3177631) 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dia:Dtpsy_1918 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein 3177631 10484087 Alide2_3037 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004388900.1 3175808 R 596154 CDS YP_004388901.1 330825598 10484088 3177677..3178477 1 NC_015422.1 KEGG: dia:Dtpsy_1919 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; enoyl-ACP reductase (NADH) 3178477 10484088 Alide2_3038 Alicycliphilus denitrificans K601 enoyl-ACP reductase (NADH) YP_004388901.1 3177677 D 596154 CDS YP_004388902.1 330825599 10484089 3178573..3179481 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: rsc:RCFBP_10755 multidrug resistance efflux transporter; hypothetical protein 3179481 10484089 Alide2_3039 Alicycliphilus denitrificans K601 hypothetical protein YP_004388902.1 3178573 D 596154 CDS YP_004388903.1 330825600 10484090 complement(3179541..3179765) 1 NC_015422.1 PFAM: Protein of unknown function DUF465; KEGG: cvi:CV_3311 hypothetical protein; hypothetical protein 3179765 10484090 Alide2_3040 Alicycliphilus denitrificans K601 hypothetical protein YP_004388903.1 3179541 R 596154 CDS YP_004388904.1 330825601 10484091 3179914..3180828 1 NC_015422.1 KEGG: dia:Dtpsy_2251 DNA ligase; PFAM: DNA ligase, ATP-dependent, central; DNA ligase (ATP) 3180828 10484091 Alide2_3041 Alicycliphilus denitrificans K601 DNA ligase (ATP) YP_004388904.1 3179914 D 596154 CDS YP_004388905.1 330825602 10484092 3181003..3181752 1 NC_015422.1 KEGG: aav:Aave_4673 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC; YjbE family integral membrane protein 3181752 10484092 Alide2_3042 Alicycliphilus denitrificans K601 YjbE family integral membrane protein YP_004388905.1 3181003 D 596154 CDS YP_004388906.1 330825603 10484093 complement(3181813..3184173) 1 NC_015422.1 KEGG: ajs:Ajs_2762 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal; lysine decarboxylase 3184173 10484093 Alide2_3043 Alicycliphilus denitrificans K601 lysine decarboxylase YP_004388906.1 3181813 R 596154 CDS YP_004388907.1 330825604 10484094 3184322..3184753 1 NC_015422.1 KEGG: dia:Dtpsy_2253 hypothetical protein; hypothetical protein 3184753 10484094 Alide2_3044 Alicycliphilus denitrificans K601 hypothetical protein YP_004388907.1 3184322 D 596154 CDS YP_004388908.1 330825605 10484095 3184823..3185740 1 NC_015422.1 KEGG: dia:Dtpsy_2254 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; hypothetical protein 3185740 10484095 Alide2_3045 Alicycliphilus denitrificans K601 hypothetical protein YP_004388908.1 3184823 D 596154 CDS YP_004388909.1 330825606 10484096 complement(3185737..3186639) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rfr:Rfer_0879 LysR family transcriptional regulator; LysR family transcriptional regulator 3186639 10484096 Alide2_3046 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388909.1 3185737 R 596154 CDS YP_004388910.1 330825607 10484097 3186832..3188556 1 NC_015422.1 KEGG: ajs:Ajs_2520 thiamine pyrophosphate protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; acetolactate synthase 3188556 10484097 Alide2_3047 Alicycliphilus denitrificans K601 acetolactate synthase YP_004388910.1 3186832 D 596154 CDS YP_004388911.1 330825608 10484100 3189677..3189808 1 NC_015422.1 hypothetical protein 3189808 10484100 Alide2_3049 Alicycliphilus denitrificans K601 hypothetical protein YP_004388911.1 3189677 D 596154 CDS YP_004388912.1 330825609 10484101 3189909..3190118 1 NC_015422.1 PFAM: Protein of unknown function DUF1778; KEGG: ctt:CtCNB1_1524 hypothetical protein; hypothetical protein 3190118 10484101 Alide2_3050 Alicycliphilus denitrificans K601 hypothetical protein YP_004388912.1 3189909 D 596154 CDS YP_004388913.1 330825610 10484102 3190105..3190893 1 NC_015422.1 manually curated; KEGG: ecc:c5378 hypothetical protein; hypothetical protein 3190893 10484102 Alide2_3051 Alicycliphilus denitrificans K601 hypothetical protein YP_004388913.1 3190105 D 596154 CDS YP_004388914.1 330825611 10484103 complement(3190925..3191839) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 3191839 10484103 Alide2_3052 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004388914.1 3190925 R 596154 CDS YP_004388915.1 330825612 10484104 complement(3191836..3192159) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 3192159 10484104 Alide2_3053 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004388915.1 3191836 R 596154 CDS YP_004388916.1 330825613 10484105 3192328..3193665 1 NC_015422.1 KEGG: rme:Rmet_3347 hypothetical protein; hypothetical protein 3193665 10484105 Alide2_3054 Alicycliphilus denitrificans K601 hypothetical protein YP_004388916.1 3192328 D 596154 CDS YP_004388917.1 330825614 10484106 complement(3194285..3195100) 1 NC_015422.1 PFAM: Transposase, IS4-like; KEGG: aav:Aave_4617 transposase, IS4 family protein; transposase IS4 family protein 3195100 10484106 Alide2_3055 Alicycliphilus denitrificans K601 transposase IS4 family protein YP_004388917.1 3194285 R 596154 CDS YP_004388918.1 330825615 10484107 3195277..3196050 1 NC_015422.1 KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; Extracellular Endonuclease, subunit A; DNA/RNA non-specific endonuclease 3196050 10484107 Alide2_3056 Alicycliphilus denitrificans K601 DNA/RNA non-specific endonuclease YP_004388918.1 3195277 D 596154 CDS YP_004388919.1 330825616 10484108 complement(3196333..3197847) 1 NC_015422.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66 3197847 10484108 Alide2_3057 Alicycliphilus denitrificans K601 transposase IS66 YP_004388919.1 3196333 R 596154 CDS YP_004388920.1 330825617 10484109 complement(3197930..3198262) 1 NC_015422.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 3198262 10484109 Alide2_3058 Alicycliphilus denitrificans K601 IS66 Orf2 family protein YP_004388920.1 3197930 R 596154 CDS YP_004388921.1 330825618 10484110 complement(3198259..3198687) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein 3198687 10484110 Alide2_3059 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004388921.1 3198259 R 596154 CDS YP_004388922.1 330825619 10484111 3198747..3199073 1 NC_015422.1 manually curated; KEGG: alv:Alvin_3273 hypothetical protein; hypothetical protein 3199073 10484111 Alide2_3060 Alicycliphilus denitrificans K601 hypothetical protein YP_004388922.1 3198747 D 596154 CDS YP_004388923.1 330825620 10484112 3199176..3200150 1 NC_015422.1 TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: ctt:CtCNB1_1504 hypothetical protein; phage/plasmid-like protein 3200150 10484112 Alide2_3061 Alicycliphilus denitrificans K601 phage/plasmid-like protein YP_004388923.1 3199176 D 596154 CDS YP_004388924.1 330825621 10484113 3200291..3201319 1 NC_015422.1 KEGG: har:HEAR0514 hypothetical protein; TIGRFAM: Putative phage-type endonuclease; PFAM: YqaJ viral recombinase family; phage-type endonuclease 3201319 10484113 Alide2_3062 Alicycliphilus denitrificans K601 phage-type endonuclease YP_004388924.1 3200291 D 596154 CDS YP_004388925.1 330825622 10484114 3201430..3202455 1 NC_015422.1 KEGG: pag:PLES_23531 hypothetical protein; hypothetical protein 3202455 10484114 Alide2_3063 Alicycliphilus denitrificans K601 hypothetical protein YP_004388925.1 3201430 D 596154 CDS YP_004388926.1 330825623 10484115 3202442..3203296 1 NC_015422.1 hypothetical protein 3203296 10484115 Alide2_3064 Alicycliphilus denitrificans K601 hypothetical protein YP_004388926.1 3202442 D 596154 CDS YP_004388927.1 330825624 10484116 complement(3203609..3203770) 1 NC_015422.1 hypothetical protein 3203770 10484116 Alide2_3065 Alicycliphilus denitrificans K601 hypothetical protein YP_004388927.1 3203609 R 596154 CDS YP_004388928.1 330825625 10484117 complement(3203781..3204320) 1 NC_015422.1 KEGG: abn:AB57_0651 hypothetical protein; hypothetical protein 3204320 10484117 Alide2_3066 Alicycliphilus denitrificans K601 hypothetical protein YP_004388928.1 3203781 R 596154 CDS YP_004388929.1 330825626 10484118 3204480..3204743 1 NC_015422.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: rsl:RPSI07_1481 putative HTH-type transcriptional regulator; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 3204743 10484118 Alide2_3067 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004388929.1 3204480 D 596154 CDS YP_004388930.1 330825627 10484119 complement(3204896..3206383) 1 NC_015422.1 KEGG: dap:Dacet_0600 hypothetical protein; hypothetical protein 3206383 10484119 Alide2_3068 Alicycliphilus denitrificans K601 hypothetical protein YP_004388930.1 3204896 R 596154 CDS YP_004388931.1 330825628 10484120 3207053..3209449 1 NC_015422.1 KEGG: vap:Vapar_6015 DNA polymerase II; PFAM: DNA-directed DNA polymerase, family B, conserved region; DNA-directed DNA polymerase, family B, exonuclease domain; SMART: DNA-directed DNA polymerase, family B; DNA polymerase B region 3209449 10484120 Alide2_3069 Alicycliphilus denitrificans K601 DNA polymerase B region YP_004388931.1 3207053 D 596154 CDS YP_004388932.1 330825629 10484121 complement(3209572..3210234) 1 NC_015422.1 KEGG: ppg:PputGB1_4754 transposase; transposase 3210234 10484121 Alide2_3070 Alicycliphilus denitrificans K601 transposase YP_004388932.1 3209572 R 596154 CDS YP_004388933.1 330825630 10484122 complement(3210462..3210644) 1 NC_015422.1 PFAM: Prophage CP4-57 regulatory; KEGG: ppg:PputGB1_4755 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 3210644 10484122 Alide2_3071 Alicycliphilus denitrificans K601 phage transcriptional regulator AlpA YP_004388933.1 3210462 R 596154 CDS YP_004388934.1 330825631 10484123 3211314..3212240 1 NC_015422.1 KEGG: ppg:PputGB1_4756 hypothetical protein; hypothetical protein 3212240 10484123 Alide2_3072 Alicycliphilus denitrificans K601 hypothetical protein YP_004388934.1 3211314 D 596154 CDS YP_004388935.1 330825632 10484124 complement(3212314..3213570) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: ecp:ECP_1909 Int/Topo IB signature motif; other site; integrase family protein 3213570 10484124 Alide2_3073 Alicycliphilus denitrificans K601 integrase family protein YP_004388935.1 3212314 R 596154 CDS YP_004388936.1 330825633 10484125 3213930..3214907 1 NC_015422.1 PFAM: Lytic transglycosylase-like, catalytic; Sel1-like; KEGG: rfr:Rfer_0483 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 3214907 10484125 Alide2_3074 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004388936.1 3213930 D 596154 CDS YP_004388937.1 330825634 10484130 complement(3217826..3218659) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1711 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; 3-oxoacyl-ACP reductase 3218659 10484130 Alide2_3079 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004388937.1 3217826 R 596154 CDS YP_004388938.1 330825635 10484131 complement(3218675..3220279) 1 NC_015422.1 KEGG: tfu:Tfu_1300 DitJ-like CoA ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 3220279 10484131 Alide2_3080 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004388938.1 3218675 R 596154 CDS YP_004388939.1 330825636 10484132 complement(3220291..3220884) 1 NC_015422.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: kko:Kkor_1470 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 3220884 10484132 Alide2_3081 Alicycliphilus denitrificans K601 carboxymuconolactone decarboxylase YP_004388939.1 3220291 R 596154 CDS YP_004388940.1 330825637 10484133 complement(3220928..3221635) 1 NC_015422.1 KEGG: axy:AXYL_02565 ABC transporter family protein 37; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 3221635 10484133 Alide2_3082 Alicycliphilus denitrificans K601 ABC transporter YP_004388940.1 3220928 R 596154 CDS YP_004388941.1 330825638 10484134 complement(3221632..3222384) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: axy:AXYL_02566 ABC transporter family protein 38; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 3222384 10484134 Alide2_3083 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004388941.1 3221632 R 596154 CDS YP_004388942.1 330825639 10484135 complement(3222381..3223349) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: axy:AXYL_02567 inner-membrane translocator 29; ABC transporter permease 3223349 10484135 Alide2_3084 Alicycliphilus denitrificans K601 ABC transporter permease YP_004388942.1 3222381 R 596154 CDS YP_004388943.1 330825640 10484136 complement(3223346..3224203) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: axy:AXYL_02568 inner-membrane translocator 30; ABC transporter permease 3224203 10484136 Alide2_3085 Alicycliphilus denitrificans K601 ABC transporter permease YP_004388943.1 3223346 R 596154 CDS YP_004388944.1 330825641 10484137 complement(3224272..3225468) 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: axy:AXYL_02569 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; extracellular ligand-binding receptor 3225468 10484137 Alide2_3086 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004388944.1 3224272 R 596154 CDS YP_004388945.1 330825642 10484138 complement(3225506..3226315) 1 NC_015422.1 KEGG: rpb:RPB_4328 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 3226315 10484138 Alide2_3087 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004388945.1 3225506 R 596154 CDS YP_004388946.1 330825643 10484139 complement(3226327..3227514) 1 NC_015422.1 KEGG: bxe:Bxe_B2740 lipid-transfer protein; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; propanoyl-CoA C-acyltransferase 3227514 10484139 Alide2_3088 Alicycliphilus denitrificans K601 propanoyl-CoA C-acyltransferase YP_004388946.1 3226327 R 596154 CDS YP_004388947.1 330825644 10484140 complement(3227570..3229135) 1 NC_015422.1 KEGG: azl:AZL_a10790 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 3229135 10484140 Alide2_3089 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004388947.1 3227570 R 596154 CDS YP_004388948.1 330825645 10484141 3229354..3230049 1 NC_015422.1 KEGG: rme:Rmet_3794 putative TetR family transcriptional regulator; TetR family transcriptional regulator 3230049 10484141 Alide2_3090 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004388948.1 3229354 D 596154 CDS YP_004388949.1 330825646 10484142 complement(3230240..3230371) 1 NC_015422.1 hypothetical protein 3230371 10484142 Alide2_3091 Alicycliphilus denitrificans K601 hypothetical protein YP_004388949.1 3230240 R 596154 CDS YP_004388950.1 330825647 10484143 complement(3230437..3231456) 1 NC_015422.1 KEGG: ajs:Ajs_1799 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; Twin-arginine translocation pathway, signal sequence; PFAM: Bacterial extracellular solute-binding, family 1; sulfate ABC transporter substrate-binding protein 3231456 10484143 Alide2_3092 Alicycliphilus denitrificans K601 sulfate ABC transporter substrate-binding protein YP_004388950.1 3230437 R 596154 CDS YP_004388951.1 330825648 10484144 3231581..3231853 1 NC_015422.1 PFAM: Fe(II) trafficking protein YggX; KEGG: ctt:CtCNB1_3078 Fe(II) trafficking protein YggX; Fe(II) trafficking protein YggX 3231853 10484144 Alide2_3093 Alicycliphilus denitrificans K601 Fe(II) trafficking protein YggX YP_004388951.1 3231581 D 596154 CDS YP_004388952.1 330825649 10484145 3231925..3232590 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0126; KEGG: dia:Dtpsy_1925 protein of unknown function UPF0126; hypothetical protein 3232590 10484145 Alide2_3094 Alicycliphilus denitrificans K601 hypothetical protein YP_004388952.1 3231925 D 596154 CDS YP_004388953.1 330825650 10484146 3232587..3234470 1 NC_015422.1 TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal; HAMAP: tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; KEGG: dac:Daci_4644 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; Domain of unknown function DUF752; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 3234470 10484146 Alide2_3095 Alicycliphilus denitrificans K601 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC YP_004388953.1 3232587 D 596154 CDS YP_004388954.1 330825651 10484147 3234580..3235383 1 NC_015422.1 PFAM: Protein of unknown function DUF81; KEGG: aav:Aave_3052 hypothetical protein; hypothetical protein 3235383 10484147 Alide2_3096 Alicycliphilus denitrificans K601 hypothetical protein YP_004388954.1 3234580 D 596154 CDS YP_004388955.1 330825652 10484148 3235410..3237197 1 NC_015422.1 PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; KEGG: dia:Dtpsy_1927 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulfite reductase 4Fe-4S region 3237197 10484148 Alide2_3097 Alicycliphilus denitrificans K601 nitrite and sulfite reductase 4Fe-4S region YP_004388955.1 3235410 D 596154 CDS YP_004388956.1 330825653 10484149 3237227..3237622 1 NC_015422.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: dia:Dtpsy_1928 hypothetical protein; hypothetical protein 3237622 10484149 Alide2_3098 Alicycliphilus denitrificans K601 hypothetical protein YP_004388956.1 3237227 D 596154 CDS YP_004388957.1 330825654 10484150 3237619..3238242 1 NC_015422.1 KEGG: ajs:Ajs_1793 phosphoadenylylsulfate reductase (thioredoxin); PFAM: Phosphoadenosine phosphosulphate reductase; phosphoadenylyl-sulfate reductase (thioredoxin) 3238242 10484150 Alide2_3099 Alicycliphilus denitrificans K601 phosphoadenylyl-sulfate reductase (thioredoxin) YP_004388957.1 3237619 D 596154 CDS YP_004388958.1 330825655 10484151 3238308..3239264 1 NC_015422.1 KEGG: aav:Aave_3055 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase; sulfate adenylyltransferase 3239264 10484151 Alide2_3100 Alicycliphilus denitrificans K601 sulfate adenylyltransferase YP_004388958.1 3238308 D 596154 CDS YP_004388959.1 330825656 10484152 3239264..3240631 1 NC_015422.1 TIGRFAM: Sulphate adenylyltransferase, large subunit; KEGG: dia:Dtpsy_1931 sulfate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; sulfate adenylyltransferase, large subunit 3240631 10484152 Alide2_3101 Alicycliphilus denitrificans K601 sulfate adenylyltransferase, large subunit YP_004388959.1 3239264 D 596154 CDS YP_004388960.1 330825657 10484153 3240759..3241082 1 NC_015422.1 PFAM: Ferredoxin, C-terminal; 4Fe-4S binding domain; KEGG: dia:Dtpsy_1932 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin, C-terminal protein 3241082 10484153 Alide2_3102 Alicycliphilus denitrificans K601 ferredoxin, C-terminal protein YP_004388960.1 3240759 D 596154 CDS YP_004388961.1 330825658 10484154 3241097..3242143 1 NC_015422.1 KEGG: dia:Dtpsy_1933 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; ferredoxin--NADP(+) reductase 3242143 10484154 Alide2_3103 Alicycliphilus denitrificans K601 ferredoxin--NADP(+) reductase YP_004388961.1 3241097 D 596154 CDS YP_004388962.1 330825659 10484155 3242140..3243411 1 NC_015422.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: ctt:CtCNB1_2972 cytosine/purines/uracil permease; cytosine/purines uracil thiamine allantoin permease 3243411 10484155 Alide2_3104 Alicycliphilus denitrificans K601 cytosine/purines uracil thiamine allantoin permease YP_004388962.1 3242140 D 596154 CDS YP_004388963.1 330825660 10484156 3243498..3243974 1 NC_015422.1 KEGG: dia:Dtpsy_1934 SH3 type 3 domain protein; PFAM: SH3, type 3; Protein of unknown function DUF1058; SMART: SH3-like domain, bacterial; SH3 type 3 domain-containing protein 3243974 10484156 Alide2_3105 Alicycliphilus denitrificans K601 SH3 type 3 domain-containing protein YP_004388963.1 3243498 D 596154 CDS YP_004388964.1 330825661 10484157 complement(3243985..3244833) 1 NC_015422.1 TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: ajs:Ajs_1787 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 3244833 10484157 Alide2_3106 Alicycliphilus denitrificans K601 phosphomethylpyrimidine kinase YP_004388964.1 3243985 R 596154 CDS YP_004388965.1 330825662 10484158 3245028..3246146 1 NC_015422.1 KEGG: dia:Dtpsy_1936 FAD dependent oxidoreductase; TIGRFAM: Glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; glycine oxidase ThiO 3246146 10484158 Alide2_3107 Alicycliphilus denitrificans K601 glycine oxidase ThiO YP_004388965.1 3245028 D 596154 CDS YP_004388966.1 330825663 10484159 3246143..3246340 1 NC_015422.1 KEGG: dia:Dtpsy_1937 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS; thiamine biosynthesis protein ThiS 3246340 10484159 Alide2_3108 Alicycliphilus denitrificans K601 thiamine biosynthesis protein ThiS YP_004388966.1 3246143 D 596154 CDS YP_004388967.1 330825664 10484160 3246356..3247159 1 NC_015422.1 KEGG: dia:Dtpsy_1938 thiazole synthase; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis; thiazole synthase 3247159 10484160 Alide2_3109 Alicycliphilus denitrificans K601 thiazole synthase YP_004388967.1 3246356 D 596154 CDS YP_004388968.1 330825665 10484161 3247160..3248062 1 NC_015422.1 KEGG: dia:Dtpsy_1939 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase; thiamine-phosphate diphosphorylase 3248062 10484161 Alide2_3110 Alicycliphilus denitrificans K601 thiamine-phosphate diphosphorylase YP_004388968.1 3247160 D 596154 CDS YP_004388969.1 330825666 10484162 complement(3248073..3250091) 1 NC_015422.1 KEGG: dia:Dtpsy_1940 hypothetical protein; hypothetical protein 3250091 10484162 Alide2_3111 Alicycliphilus denitrificans K601 hypothetical protein YP_004388969.1 3248073 R 596154 CDS YP_004388970.1 330825667 10484163 3250169..3251689 1 NC_015422.1 KEGG: dia:Dtpsy_1941 3-hydroxy-acyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; 3-hydroxybutyryl-CoA dehydrogenase 3251689 10484163 Alide2_3112 Alicycliphilus denitrificans K601 3-hydroxybutyryl-CoA dehydrogenase YP_004388970.1 3250169 D 596154 CDS YP_004388971.1 330825668 10484164 3251700..3252479 1 NC_015422.1 PFAM: Crotonase, core; KEGG: dia:Dtpsy_1942 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3252479 10484164 Alide2_3113 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004388971.1 3251700 D 596154 CDS YP_004388972.1 330825669 10484165 3252669..3253388 1 NC_015422.1 KEGG: ajs:Ajs_1779 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; Crp/Fnr family transcriptional regulator 3253388 10484165 Alide2_3114 Alicycliphilus denitrificans K601 Crp/Fnr family transcriptional regulator YP_004388972.1 3252669 D 596154 CDS YP_004388973.1 330825670 10484166 3253444..3254535 1 NC_015422.1 PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_1778 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 3254535 10484166 Alide2_3115 Alicycliphilus denitrificans K601 aminoglycoside phosphotransferase YP_004388973.1 3253444 D 596154 CDS YP_004388974.1 330825671 10484167 3254551..3255792 1 NC_015422.1 KEGG: dia:Dtpsy_1945 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; isovaleryl-CoA dehydrogenase 3255792 10484167 Alide2_3116 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004388974.1 3254551 D 596154 CDS YP_004388975.1 330825672 10484168 3255938..3259933 1 NC_015422.1 KEGG: dac:Daci_5941 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase domain; delta-1-pyrroline-5-carboxylate dehydrogenase 3259933 10484168 Alide2_3117 Alicycliphilus denitrificans K601 delta-1-pyrroline-5-carboxylate dehydrogenase YP_004388975.1 3255938 D 596154 CDS YP_004388976.1 330825673 10484169 3260136..3261638 1 NC_015422.1 KEGG: dac:Daci_5942 sodium/proline symporter; TIGRFAM: Sodium/solute symporter, subgroup; Sodium/proline symporter; PFAM: Sodium/solute symporter; SSS sodium solute transporter superfamily protein 3261638 10484169 Alide2_3118 Alicycliphilus denitrificans K601 SSS sodium solute transporter superfamily protein YP_004388976.1 3260136 D 596154 CDS YP_004388977.1 330825674 10484170 3261722..3262534 1 NC_015422.1 KEGG: dia:Dtpsy_1946 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 3262534 10484170 Alide2_3119 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004388977.1 3261722 D 596154 CDS YP_004388978.1 330825675 10484171 complement(3262572..3263666) 1 NC_015422.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; KEGG: ajs:Ajs_1775 murein-dd-endopeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 3263666 10484171 Alide2_3120 Alicycliphilus denitrificans K601 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_004388978.1 3262572 R 596154 CDS YP_004388979.1 330825676 10484172 complement(3263782..3265323) 1 NC_015422.1 SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type; KEGG: ajs:Ajs_1774 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; 2-isopropylmalate synthase 3265323 10484172 Alide2_3121 Alicycliphilus denitrificans K601 2-isopropylmalate synthase YP_004388979.1 3263782 R 596154 CDS YP_004388980.1 330825677 10484173 complement(3265359..3267026) 1 NC_015422.1 SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: Yeast 2-isopropylmalate synthase; KEGG: dia:Dtpsy_1949 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; 2-isopropylmalate synthase 3267026 10484173 Alide2_3122 Alicycliphilus denitrificans K601 2-isopropylmalate synthase YP_004388980.1 3265359 R 596154 CDS YP_004388981.1 330825678 10484174 complement(3267234..3268142) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_3346 LysR family transcriptional regulator; LysR family transcriptional regulator 3268142 10484174 Alide2_3123 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004388981.1 3267234 R 596154 CDS YP_004388982.1 330825679 10484175 3268275..3268829 1 NC_015422.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3679 glyoxalase-family protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3268829 10484175 Alide2_3124 Alicycliphilus denitrificans K601 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004388982.1 3268275 D 596154 CDS YP_004388983.1 330825680 10484176 3268858..3270231 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: hse:Hsero_1116 4-hydroxybenzoate transporter transmembrane protein; major facilitator superfamily protein 3270231 10484176 Alide2_3125 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004388983.1 3268858 D 596154 CDS YP_004388984.1 330825681 10484177 3270307..3271320 1 NC_015422.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: tmz:Tmz1t_0853 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 3271320 10484177 Alide2_3126 Alicycliphilus denitrificans K601 fumarylacetoacetate (FAA) hydrolase YP_004388984.1 3270307 D 596154 CDS YP_004388985.1 330825682 10484178 3271331..3271999 1 NC_015422.1 TIGRFAM: Maleylacetoacetate isomerase; KEGG: xtr:100496290 probable maleylacetoacetate isomerase-like; PFAM: Glutathione S-transferase, N-terminal; maleylacetoacetate isomerase 3271999 10484178 Alide2_3127 Alicycliphilus denitrificans K601 maleylacetoacetate isomerase YP_004388985.1 3271331 D 596154 CDS YP_004388986.1 330825683 10484179 complement(3272024..3272860) 1 NC_015422.1 KEGG: xtr:100496448 CDP-diacylglycerol--serine O-phosphatidyltransferase-like; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 3272860 10484179 Alide2_3128 Alicycliphilus denitrificans K601 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_004388986.1 3272024 R 596154 CDS YP_004388987.1 330825684 10484180 complement(3273038..3274054) 1 NC_015422.1 TIGRFAM: Acetohydroxy acid isomeroreductase; KEGG: dia:Dtpsy_1951 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; ketol-acid reductoisomerase 3274054 10484180 Alide2_3129 Alicycliphilus denitrificans K601 ketol-acid reductoisomerase YP_004388987.1 3273038 R 596154 CDS YP_004388988.1 330825685 10484181 complement(3274123..3274614) 1 NC_015422.1 KEGG: ctt:CtCNB1_1659 acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT; acetolactate synthase small subunit 3274614 10484181 Alide2_3130 Alicycliphilus denitrificans K601 acetolactate synthase small subunit YP_004388988.1 3274123 R 596154 CDS YP_004388989.1 330825686 10484182 complement(3274802..3276595) 1 NC_015422.1 TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: ajs:Ajs_1769 acetolactate synthase 3 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain; acetolactate synthase large subunit 3276595 10484182 Alide2_3131 Alicycliphilus denitrificans K601 acetolactate synthase large subunit YP_004388989.1 3274802 R 596154 CDS YP_004388990.1 330825687 10484183 3276884..3277453 1 NC_015422.1 KEGG: dia:Dtpsy_1954 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 3277453 10484183 Alide2_3132 Alicycliphilus denitrificans K601 ECF subfamily RNA polymerase sigma-24 subunit YP_004388990.1 3276884 D 596154 CDS YP_004388991.1 330825688 10484184 3277450..3277911 1 NC_015422.1 PFAM: Protein of unknown function DUF3619; KEGG: dia:Dtpsy_1955 putative transmembrane protein; hypothetical protein 3277911 10484184 Alide2_3133 Alicycliphilus denitrificans K601 hypothetical protein YP_004388991.1 3277450 D 596154 CDS YP_004388992.1 330825689 10484185 3277935..3278759 1 NC_015422.1 PFAM: Protein of unknown function DUF3106; KEGG: ajs:Ajs_1766 putative transmembrane protein; hypothetical protein 3278759 10484185 Alide2_3134 Alicycliphilus denitrificans K601 hypothetical protein YP_004388992.1 3277935 D 596154 CDS YP_004388993.1 330825690 10484186 3278787..3279359 1 NC_015422.1 PFAM: RDD; KEGG: ajs:Ajs_1765 RDD domain-containing protein; RDD domain-containing protein 3279359 10484186 Alide2_3135 Alicycliphilus denitrificans K601 RDD domain-containing protein YP_004388993.1 3278787 D 596154 CDS YP_004388994.1 330825691 10484187 3279422..3279820 1 NC_015422.1 PFAM: Diacylglycerol kinase, prokaryotic; KEGG: dia:Dtpsy_1958 diacylglycerol kinase; diacylglycerol kinase 3279820 10484187 Alide2_3136 Alicycliphilus denitrificans K601 diacylglycerol kinase YP_004388994.1 3279422 D 596154 CDS YP_004388995.1 330825692 10484188 3279813..3280406 1 NC_015422.1 KEGG: dia:Dtpsy_1959 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; hypothetical protein 3280406 10484188 Alide2_3137 Alicycliphilus denitrificans K601 hypothetical protein YP_004388995.1 3279813 D 596154 CDS YP_004388996.1 330825693 10484189 complement(3280416..3280754) 1 NC_015422.1 KEGG: dia:Dtpsy_1960 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 3280754 10484189 Alide2_3138 Alicycliphilus denitrificans K601 nitrogen regulatory protein P-II YP_004388996.1 3280416 R 596154 CDS YP_004388997.1 330825694 10484190 complement(3280805..3282463) 1 NC_015422.1 TIGRFAM: NAD synthase; KEGG: vei:Veis_1737 NAD+ synthetase; PFAM: NAD/GMP synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 3282463 10484190 Alide2_3139 Alicycliphilus denitrificans K601 NAD+ synthetase YP_004388997.1 3280805 R 596154 CDS YP_004388998.1 330825695 10484192 3282758..3283981 1 NC_015422.1 PFAM: Protein of unknown function DUF482; KEGG: vei:Veis_1736 hypothetical protein; hypothetical protein 3283981 10484192 Alide2_3141 Alicycliphilus denitrificans K601 hypothetical protein YP_004388998.1 3282758 D 596154 CDS YP_004388999.1 330825696 10484193 complement(3283978..3285735) 1 NC_015422.1 KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 3285735 10484193 Alide2_3142 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004388999.1 3283978 R 596154 CDS YP_004389000.1 330825697 10484194 complement(3285748..3286254) 1 NC_015422.1 KEGG: ajs:Ajs_1759 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein; CheW protein 3286254 10484194 Alide2_3143 Alicycliphilus denitrificans K601 CheW protein YP_004389000.1 3285748 R 596154 CDS YP_004389001.1 330825698 10484195 complement(3286456..3286989) 1 NC_015422.1 KEGG: dia:Dtpsy_1964 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase; inorganic diphosphatase 3286989 10484195 Alide2_3144 Alicycliphilus denitrificans K601 inorganic diphosphatase YP_004389001.1 3286456 R 596154 CDS YP_004389002.1 330825699 10484196 3287204..3289285 1 NC_015422.1 PFAM: Pyrophosphate-energised proton pump; TIGRFAM: Pyrophosphate-energised proton pump; HAMAP: Pyrophosphate-energised proton pump; KEGG: dia:Dtpsy_1965 membrane-bound proton-translocating pyrophosphatase; pyrophosphate-energized proton pump 3289285 10484196 Alide2_3145 Alicycliphilus denitrificans K601 pyrophosphate-energized proton pump YP_004389002.1 3287204 D 596154 CDS YP_004389003.1 330825700 10484197 3289450..3290883 1 NC_015422.1 PFAM: Aldehyde dehydrogenase domain; KEGG: dia:Dtpsy_1966 aldehyde dehydrogenase; aldehyde dehydrogenase 3290883 10484197 Alide2_3146 Alicycliphilus denitrificans K601 aldehyde dehydrogenase YP_004389003.1 3289450 D 596154 CDS YP_004389004.1 330825701 10484198 3290893..3291450 1 NC_015422.1 KEGG: ajs:Ajs_1755 hypothetical protein; hypothetical protein 3291450 10484198 Alide2_3147 Alicycliphilus denitrificans K601 hypothetical protein YP_004389004.1 3290893 D 596154 CDS YP_004389005.1 330825702 10484199 complement(3291499..3292341) 1 NC_015422.1 KEGG: dia:Dtpsy_1968 hypothetical protein; hypothetical protein 3292341 10484199 Alide2_3148 Alicycliphilus denitrificans K601 hypothetical protein YP_004389005.1 3291499 R 596154 CDS YP_004389006.1 330825703 10484200 3292469..3293638 1 NC_015422.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: dia:Dtpsy_1969 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 3293638 10484200 Alide2_3149 Alicycliphilus denitrificans K601 molybdenum cofactor biosynthesis protein A YP_004389006.1 3292469 D 596154 CDS YP_004389007.1 330825704 10484201 3293642..3294274 1 NC_015422.1 TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: dia:Dtpsy_1970 molybdopterin-guanine dinucleotide biosynthesis protein MobA; molybdopterin-guanine dinucleotide biosynthesis protein MobA 3294274 10484201 Alide2_3150 Alicycliphilus denitrificans K601 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_004389007.1 3293642 D 596154 CDS YP_004389008.1 330825705 10484202 3294271..3294846 1 NC_015422.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aav:Aave_2657 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3294846 10484202 Alide2_3151 Alicycliphilus denitrificans K601 N-acetyltransferase GCN5 YP_004389008.1 3294271 D 596154 CDS YP_004389009.1 330825706 10484203 3294833..3296191 1 NC_015422.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; MoeA, N-terminal and linker domain; MoeA, C-terminal, domain IV; KEGG: dia:Dtpsy_1971 molybdenum cofactor synthesis domain protein; SMART: Molybdopterin binding; molybdenum cofactor synthesis domain-containing protein 3296191 10484203 Alide2_3152 Alicycliphilus denitrificans K601 molybdenum cofactor synthesis domain-containing protein YP_004389009.1 3294833 D 596154 CDS YP_004389010.1 330825707 10484204 3296193..3296519 1 NC_015422.1 PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1972 thioredoxin domain protein; thioredoxin domain-containing protein 3296519 10484204 Alide2_3153 Alicycliphilus denitrificans K601 thioredoxin domain-containing protein YP_004389010.1 3296193 D 596154 CDS YP_004389011.1 330825708 10484205 3296516..3296902 1 NC_015422.1 KEGG: dac:Daci_4475 hypothetical protein; hypothetical protein 3296902 10484205 Alide2_3154 Alicycliphilus denitrificans K601 hypothetical protein YP_004389011.1 3296516 D 596154 CDS YP_004389012.1 330825709 10484206 complement(3296889..3297875) 1 NC_015422.1 KEGG: bbr:BB4338 hypothetical protein; hypothetical protein 3297875 10484206 Alide2_3155 Alicycliphilus denitrificans K601 hypothetical protein YP_004389012.1 3296889 R 596154 CDS YP_004389013.1 330825710 10484207 complement(3297955..3298632) 1 NC_015422.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: rsl:RPSI07_mp1263 dimethylmenaquinone methyltransferase; protein; dimethylmenaquinone methyltransferase 3298632 10484207 Alide2_3156 Alicycliphilus denitrificans K601 dimethylmenaquinone methyltransferase YP_004389013.1 3297955 R 596154 CDS YP_004389014.1 330825711 10484208 complement(3298668..3299570) 1 NC_015422.1 KEGG: aav:Aave_4073 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 3299570 10484208 Alide2_3157 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004389014.1 3298668 R 596154 CDS YP_004389015.1 330825712 10484209 complement(3299724..3300650) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rso:RS03179 transcription regulator protein; LysR family transcriptional regulator 3300650 10484209 Alide2_3158 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389015.1 3299724 R 596154 CDS YP_004389016.1 330825713 10484210 3300789..3301463 1 NC_015422.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2990 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 3301463 10484210 Alide2_3159 Alicycliphilus denitrificans K601 dimethylmenaquinone methyltransferase YP_004389016.1 3300789 D 596154 CDS YP_004389017.1 330825714 10484211 3301469..3302101 1 NC_015422.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2989 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 3302101 10484211 Alide2_3160 Alicycliphilus denitrificans K601 dimethylmenaquinone methyltransferase YP_004389017.1 3301469 D 596154 CDS YP_004389018.1 330825715 10484212 3302098..3303315 1 NC_015422.1 KEGG: rso:RSp1232 aspartate aminotransferase A protein; PFAM: Aminotransferase, class I/classII; aspartate transaminase 3303315 10484212 Alide2_3161 Alicycliphilus denitrificans K601 aspartate transaminase YP_004389018.1 3302098 D 596154 CDS YP_004389019.1 330825716 10484213 complement(3303418..3303864) 1 NC_015422.1 KEGG: dia:Dtpsy_1973 ribonuclease H; HAMAP: Ribonuclease H; PFAM: Ribonuclease H domain; ribonuclease H 3303864 10484213 Alide2_3162 Alicycliphilus denitrificans K601 ribonuclease H YP_004389019.1 3303418 R 596154 CDS YP_004389020.1 330825717 10484214 complement(3303910..3304692) 1 NC_015422.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_1744 methyltransferase type 11; type 11 methyltransferase 3304692 10484214 Alide2_3163 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004389020.1 3303910 R 596154 CDS YP_004389021.1 330825718 10484215 3304697..3305467 1 NC_015422.1 SMART: Beta-lactamase-like; TIGRFAM: Hydroxyacylglutathione hydrolase; KEGG: dia:Dtpsy_1975 hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase; PFAM: Beta-lactamase-like; hydroxyacylglutathione hydrolase 3305467 10484215 Alide2_3164 Alicycliphilus denitrificans K601 hydroxyacylglutathione hydrolase YP_004389021.1 3304697 D 596154 CDS YP_004389022.1 330825719 10484216 3305464..3306978 1 NC_015422.1 PFAM: Lytic transglycosylase-like, catalytic; MLTD-N; Peptidoglycan-binding lysin domain; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 3306978 10484216 Alide2_3165 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004389022.1 3305464 D 596154 CDS YP_004389023.1 330825720 10484217 complement(3306996..3307148) 1 NC_015422.1 PFAM: Protein of unknown function DUF3096; KEGG: dia:Dtpsy_1977 hypothetical protein; hypothetical protein 3307148 10484217 Alide2_3166 Alicycliphilus denitrificans K601 hypothetical protein YP_004389023.1 3306996 R 596154 CDS YP_004389024.1 330825721 10484218 complement(3307247..3308296) 1 NC_015422.1 KEGG: aav:Aave_2648 putative signal peptide protein; hypothetical protein 3308296 10484218 Alide2_3167 Alicycliphilus denitrificans K601 hypothetical protein YP_004389024.1 3307247 R 596154 CDS YP_004389025.1 330825722 10484219 3308714..3310030 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_3340 phage integrase family protein; integrase family protein 3310030 10484219 Alide2_3168 Alicycliphilus denitrificans K601 integrase family protein YP_004389025.1 3308714 D 596154 CDS YP_004389026.1 330825723 10484220 3310130..3310711 1 NC_015422.1 KEGG: eba:ebA218 hypothetical protein; hypothetical protein 3310711 10484220 Alide2_3169 Alicycliphilus denitrificans K601 hypothetical protein YP_004389026.1 3310130 D 596154 CDS YP_004389027.1 330825724 10484221 3310864..3311067 1 NC_015422.1 KEGG: vap:Vapar_3801 hypothetical protein; hypothetical protein 3311067 10484221 Alide2_3170 Alicycliphilus denitrificans K601 hypothetical protein YP_004389027.1 3310864 D 596154 CDS YP_004389028.1 330825725 10484222 3311068..3311418 1 NC_015422.1 KEGG: hsm:HSM_1673 hypothetical protein; hypothetical protein 3311418 10484222 Alide2_3171 Alicycliphilus denitrificans K601 hypothetical protein YP_004389028.1 3311068 D 596154 CDS YP_004389029.1 330825726 10484223 3311420..3312136 1 NC_015422.1 KEGG: ajs:Ajs_1730 hypothetical protein; hypothetical protein 3312136 10484223 Alide2_3172 Alicycliphilus denitrificans K601 hypothetical protein YP_004389029.1 3311420 D 596154 CDS YP_004389030.1 330825727 10484224 3312251..3313054 1 NC_015422.1 KEGG: vap:Vapar_3798 hypothetical protein; hypothetical protein 3313054 10484224 Alide2_3173 Alicycliphilus denitrificans K601 hypothetical protein YP_004389030.1 3312251 D 596154 CDS YP_004389031.1 330825728 10484225 3313136..3313405 1 NC_015422.1 KEGG: vap:Vapar_3797 hypothetical protein; hypothetical protein 3313405 10484225 Alide2_3174 Alicycliphilus denitrificans K601 hypothetical protein YP_004389031.1 3313136 D 596154 CDS YP_004389032.1 330825729 10484226 3313390..3313608 1 NC_015422.1 hypothetical protein 3313608 10484226 Alide2_3175 Alicycliphilus denitrificans K601 hypothetical protein YP_004389032.1 3313390 D 596154 CDS YP_004389033.1 330825730 10484227 3313605..3313823 1 NC_015422.1 hypothetical protein 3313823 10484227 Alide2_3176 Alicycliphilus denitrificans K601 hypothetical protein YP_004389033.1 3313605 D 596154 CDS YP_004389034.1 330825731 10484228 3313807..3314055 1 NC_015422.1 hypothetical protein 3314055 10484228 Alide2_3177 Alicycliphilus denitrificans K601 hypothetical protein YP_004389034.1 3313807 D 596154 CDS YP_004389035.1 330825732 10484229 3314045..3314311 1 NC_015422.1 KEGG: ctt:CtCNB1_2998 hypothetical protein; hypothetical protein 3314311 10484229 Alide2_3178 Alicycliphilus denitrificans K601 hypothetical protein YP_004389035.1 3314045 D 596154 CDS YP_004389036.1 330825733 10484231 complement(3314868..3315632) 1 NC_015422.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: aav:Aave_3403 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 3315632 10484231 Alide2_3179 Alicycliphilus denitrificans K601 UBA/THIF-type NAD/FAD binding protein YP_004389036.1 3314868 R 596154 CDS YP_004389037.1 330825734 10484232 complement(3315641..3316429) 1 NC_015422.1 TIGRFAM: Tol-Pal system, YbgF; KEGG: ajs:Ajs_1725 TPR repeat-containing protein; tol-pal system protein YbgF 3316429 10484232 Alide2_3180 Alicycliphilus denitrificans K601 tol-pal system protein YbgF YP_004389037.1 3315641 R 596154 CDS YP_004389038.1 330825735 10484233 complement(3316429..3316971) 1 NC_015422.1 KEGG: dia:Dtpsy_1980 peptidoglycan-associated lipoprotein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; peptidoglycan-associated lipoprotein 3316971 10484233 Alide2_3181 Alicycliphilus denitrificans K601 peptidoglycan-associated lipoprotein YP_004389038.1 3316429 R 596154 CDS YP_004389039.1 330825736 10484234 complement(3317015..3318337) 1 NC_015422.1 KEGG: dia:Dtpsy_1981 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller; Tol-Pal system beta propeller repeat-containing protein TolB 3318337 10484234 Alide2_3182 Alicycliphilus denitrificans K601 Tol-Pal system beta propeller repeat-containing protein TolB YP_004389039.1 3317015 R 596154 CDS YP_004389040.1 330825737 10484235 3318471..3320252 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, lipid A export, MsbA; KEGG: dia:Dtpsy_1982 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane domain; ABC transporter-like; lipid A ABC transporter ATPase/inner membrane protein MsbA 3320252 10484235 Alide2_3183 Alicycliphilus denitrificans K601 lipid A ABC transporter ATPase/inner membrane protein MsbA YP_004389040.1 3318471 D 596154 CDS YP_004389041.1 330825738 10484236 complement(3320315..3322057) 1 NC_015422.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin/lipoyl attachment; KEGG: dac:Daci_5726 carbamoyl-phosphate synthase subunit L; SMART: Biotin carboxylase, C-terminal; biotin carboxylase 3322057 10484236 Alide2_3184 Alicycliphilus denitrificans K601 biotin carboxylase YP_004389041.1 3320315 R 596154 CDS YP_004389042.1 330825739 10484237 complement(3322051..3323652) 1 NC_015422.1 SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: Allophanate hydrolase subunit 2; Conserved hypothetical protein CHP00370; KEGG: reu:Reut_A2450 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; urea amidolyase-like protein 3323652 10484237 Alide2_3185 Alicycliphilus denitrificans K601 urea amidolyase-like protein YP_004389042.1 3322051 R 596154 CDS YP_004389043.1 330825740 10484238 complement(3323660..3324472) 1 NC_015422.1 PFAM: Protein of unknown function DUF1445; KEGG: reh:H16_B1759 hypothetical protein; hypothetical protein 3324472 10484238 Alide2_3186 Alicycliphilus denitrificans K601 hypothetical protein YP_004389043.1 3323660 R 596154 CDS YP_004389044.1 330825741 10484239 complement(3324495..3325256) 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0271, LamB/YcsF; KEGG: aav:Aave_3513 LamB/YcsF family protein; LamB/YcsF family protein 3325256 10484239 Alide2_3187 Alicycliphilus denitrificans K601 LamB/YcsF family protein YP_004389044.1 3324495 R 596154 CDS YP_004389045.1 330825742 10484240 complement(3325284..3326531) 1 NC_015422.1 PFAM: General substrate transporter; KEGG: reh:H16_B1760 major facilitator superfamily transporter AAHS family protein; general substrate transporter 3326531 10484240 Alide2_3188 Alicycliphilus denitrificans K601 general substrate transporter YP_004389045.1 3325284 R 596154 CDS YP_004389046.1 330825743 10484241 3326795..3327472 1 NC_015422.1 KEGG: aav:Aave_3515 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 3327472 10484241 Alide2_3189 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004389046.1 3326795 D 596154 CDS YP_004389047.1 330825744 10484242 complement(3327476..3328693) 1 NC_015422.1 KEGG: app:CAP2UW1_0424 hypothetical protein; hypothetical protein 3328693 10484242 Alide2_3190 Alicycliphilus denitrificans K601 hypothetical protein YP_004389047.1 3327476 R 596154 CDS YP_004389048.1 330825745 10484243 complement(3328725..3328970) 1 NC_015422.1 hypothetical protein 3328970 10484243 Alide2_3191 Alicycliphilus denitrificans K601 hypothetical protein YP_004389048.1 3328725 R 596154 CDS YP_004389049.1 330825746 10484244 complement(3329165..3329845) 1 NC_015422.1 PFAM: Ankyrin repeat; KEGG: dia:Dtpsy_1983 ankyrin; ankyrin 3329845 10484244 Alide2_3192 Alicycliphilus denitrificans K601 ankyrin YP_004389049.1 3329165 R 596154 CDS YP_004389050.1 330825747 10484245 complement(3329842..3330651) 1 NC_015422.1 KEGG: ajs:Ajs_1720 TatD family hydrolase; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related; TatD family hydrolase 3330651 10484245 Alide2_3193 Alicycliphilus denitrificans K601 TatD family hydrolase YP_004389050.1 3329842 R 596154 CDS YP_004389051.1 330825748 10484246 complement(3330713..3331072) 1 NC_015422.1 PFAM: Type IV pilus assembly PilZ; KEGG: dia:Dtpsy_1985 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3331072 10484246 Alide2_3194 Alicycliphilus denitrificans K601 type IV pilus assembly PilZ YP_004389051.1 3330713 R 596154 CDS YP_004389052.1 330825749 10484247 complement(3331089..3332084) 1 NC_015422.1 KEGG: ajs:Ajs_1718 DNA-directed DNA polymerase; DNA-directed DNA polymerase 3332084 10484247 Alide2_3195 Alicycliphilus denitrificans K601 DNA-directed DNA polymerase YP_004389052.1 3331089 R 596154 CDS YP_004389053.1 330825750 10484248 complement(3332081..3332737) 1 NC_015422.1 PFAM: Thymidylate kinase; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: dia:Dtpsy_1987 thymidylate kinase; thymidylate kinase 3332737 10484248 Alide2_3196 Alicycliphilus denitrificans K601 thymidylate kinase YP_004389053.1 3332081 R 596154 CDS YP_004389054.1 330825751 10484249 complement(3332734..3333729) 1 NC_015422.1 KEGG: ajs:Ajs_1716 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755; aminodeoxychorismate lyase 3333729 10484249 Alide2_3197 Alicycliphilus denitrificans K601 aminodeoxychorismate lyase YP_004389054.1 3332734 R 596154 CDS YP_004389055.1 330825752 10484250 3333776..3334717 1 NC_015422.1 KEGG: ajs:Ajs_1715 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; folate-binding protein YgfZ 3334717 10484250 Alide2_3198 Alicycliphilus denitrificans K601 folate-binding protein YgfZ YP_004389055.1 3333776 D 596154 CDS YP_004389056.1 330825753 10484251 3334751..3335242 1 NC_015422.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: dia:Dtpsy_2009 CMP/dCMP deaminase zinc-binding; CMP/dCMP deaminase zinc-binding protein 3335242 10484251 Alide2_3199 Alicycliphilus denitrificans K601 CMP/dCMP deaminase zinc-binding protein YP_004389056.1 3334751 D 596154 CDS YP_004389057.1 330825754 10484252 3335235..3336428 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dac:Daci_2202 major facilitator transporter; major facilitator superfamily protein 3336428 10484252 Alide2_3200 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004389057.1 3335235 D 596154 CDS YP_004389058.1 330825755 10484253 3336451..3337932 1 NC_015422.1 KEGG: dac:Daci_1205 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 3337932 10484253 Alide2_3201 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004389058.1 3336451 D 596154 CDS YP_004389059.1 330825756 10484254 3337929..3338573 1 NC_015422.1 KEGG: dac:Daci_1204 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator 3338573 10484254 Alide2_3202 Alicycliphilus denitrificans K601 two component LuxR family transcriptional regulator YP_004389059.1 3337929 D 596154 CDS YP_004389060.1 330825757 10484255 3338598..3339179 1 NC_015422.1 PFAM: Domain of unknown function DUF336; KEGG: dac:Daci_1203 hypothetical protein; hypothetical protein 3339179 10484255 Alide2_3203 Alicycliphilus denitrificans K601 hypothetical protein YP_004389060.1 3338598 D 596154 CDS YP_004389061.1 330825758 10484256 complement(3339183..3340043) 1 NC_015422.1 KEGG: dia:Dtpsy_1990 thioesterase superfamily protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; GCN5-related N-acetyltransferase (GNAT) domain; 4-hydroxybenzoyl-CoA thioesterase 3340043 10484256 Alide2_3204 Alicycliphilus denitrificans K601 4-hydroxybenzoyl-CoA thioesterase YP_004389061.1 3339183 R 596154 CDS YP_004389062.1 330825759 10484257 complement(3340053..3341036) 1 NC_015422.1 KEGG: ajs:Ajs_1713 alpha/beta hydrolase domain-containing protein; alpha/beta hydrolase domain-containing protein 3341036 10484257 Alide2_3205 Alicycliphilus denitrificans K601 alpha/beta hydrolase domain-containing protein YP_004389062.1 3340053 R 596154 CDS YP_004389063.1 330825760 10484258 complement(3341049..3341924) 1 NC_015422.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: ajs:Ajs_1712 hydratase/decarboxylase; fumarylacetoacetate (FAA) hydrolase 3341924 10484258 Alide2_3206 Alicycliphilus denitrificans K601 fumarylacetoacetate (FAA) hydrolase YP_004389063.1 3341049 R 596154 CDS YP_004389064.1 330825761 10484259 complement(3342020..3342853) 1 NC_015422.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_1708 putative signal transduction protein; signal transduction protein 3342853 10484259 Alide2_3207 Alicycliphilus denitrificans K601 signal transduction protein YP_004389064.1 3342020 R 596154 CDS YP_004389065.1 330825762 10484260 complement(3342909..3343619) 1 NC_015422.1 KEGG: cti:pRALTA_0434 putative transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 3343619 10484260 Alide2_3208 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004389065.1 3342909 R 596154 CDS YP_004389066.1 330825763 10484261 3343768..3344778 1 NC_015422.1 PFAM: Amidohydrolase 2; KEGG: bam:Bamb_4804 amidohydrolase 2; amidohydrolase 2 3344778 10484261 Alide2_3209 Alicycliphilus denitrificans K601 amidohydrolase 2 YP_004389066.1 3343768 D 596154 CDS YP_004389067.1 330825764 10484262 3344829..3345788 1 NC_015422.1 KEGG: rme:Rmet_4146 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor 3345788 10484262 Alide2_3210 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor YP_004389067.1 3344829 D 596154 CDS YP_004389068.1 330825765 10484263 3345821..3346786 1 NC_015422.1 KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein 3346786 10484263 Alide2_3211 Alicycliphilus denitrificans K601 hypothetical protein YP_004389068.1 3345821 D 596154 CDS YP_004389069.1 330825766 10484264 3346789..3347991 1 NC_015422.1 KEGG: reu:Reut_B4958 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 3347991 10484264 Alide2_3212 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004389069.1 3346789 D 596154 CDS YP_004389070.1 330825767 10484265 3347988..3348839 1 NC_015422.1 PFAM: Citrate synthase-like; KEGG: rme:Rmet_4144 citrate synthase; Citrate synthase 3348839 10484265 Alide2_3213 Alicycliphilus denitrificans K601 Citrate synthase YP_004389070.1 3347988 D 596154 CDS YP_004389071.1 330825768 10484266 complement(3348930..3349937) 1 NC_015422.1 KEGG: bbr:BB0548 LacI family regulatory protein; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; lacI family transcriptional regulator 3349937 10484266 Alide2_3214 Alicycliphilus denitrificans K601 lacI family transcriptional regulator YP_004389071.1 3348930 R 596154 CDS YP_004389072.1 330825769 10484267 3350028..3351020 1 NC_015422.1 KEGG: bbr:BB0564 hypothetical protein; hypothetical protein 3351020 10484267 Alide2_3215 Alicycliphilus denitrificans K601 hypothetical protein YP_004389072.1 3350028 D 596154 CDS YP_004389073.1 330825770 10484268 3351026..3352582 1 NC_015422.1 KEGG: bbr:BB0547 putative ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 3352582 10484268 Alide2_3216 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004389073.1 3351026 D 596154 CDS YP_004389074.1 330825771 10484269 3352609..3353409 1 NC_015422.1 KEGG: rpd:RPD_4223 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 3353409 10484269 Alide2_3217 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004389074.1 3352609 D 596154 CDS YP_004389075.1 330825772 10484270 3353447..3354430 1 NC_015422.1 KEGG: reu:Reut_A0842 hypothetical protein; hypothetical protein 3354430 10484270 Alide2_3218 Alicycliphilus denitrificans K601 hypothetical protein YP_004389075.1 3353447 D 596154 CDS YP_004389076.1 330825773 10484271 3354427..3355608 1 NC_015422.1 KEGG: bbr:BB0546 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 3355608 10484271 Alide2_3219 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004389076.1 3354427 D 596154 CDS YP_004389077.1 330825774 10484272 3355605..3356003 1 NC_015422.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: bbr:BB0545 hypothetical protein; hypothetical protein 3356003 10484272 Alide2_3220 Alicycliphilus denitrificans K601 hypothetical protein YP_004389077.1 3355605 D 596154 CDS YP_004389078.1 330825775 10484273 3356026..3357000 1 NC_015422.1 KEGG: bbr:BB0544 hypothetical protein; hypothetical protein 3357000 10484273 Alide2_3221 Alicycliphilus denitrificans K601 hypothetical protein YP_004389078.1 3356026 D 596154 CDS YP_004389079.1 330825776 10484274 complement(3357016..3359400) 1 NC_015422.1 KEGG: ajs:Ajs_1707 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1; Tex-like protein 3359400 10484274 Alide2_3222 Alicycliphilus denitrificans K601 Tex-like protein YP_004389079.1 3357016 R 596154 CDS YP_004389080.1 330825777 10484275 3359493..3359897 1 NC_015422.1 KEGG: dia:Dtpsy_1998 hypothetical protein; hypothetical protein 3359897 10484275 Alide2_3223 Alicycliphilus denitrificans K601 hypothetical protein YP_004389080.1 3359493 D 596154 CDS YP_004389081.1 330825778 10484276 3359898..3360944 1 NC_015422.1 PFAM: Protein of unknown function DUF72; KEGG: dia:Dtpsy_1999 protein of unknown function DUF72; hypothetical protein 3360944 10484276 Alide2_3224 Alicycliphilus denitrificans K601 hypothetical protein YP_004389081.1 3359898 D 596154 CDS YP_004389082.1 330825779 10484277 complement(3360993..3361514) 1 NC_015422.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 3361514 10484277 Alide2_3225 Alicycliphilus denitrificans K601 OmpA/MotB domain-containing protein YP_004389082.1 3360993 R 596154 CDS YP_004389083.1 330825780 10484278 3361577..3362170 1 NC_015422.1 PFAM: ChaC-like protein; KEGG: dia:Dtpsy_1879 ChaC family protein; ChaC family protein 3362170 10484278 Alide2_3226 Alicycliphilus denitrificans K601 ChaC family protein YP_004389083.1 3361577 D 596154 CDS YP_004389084.1 330825781 10484279 3362187..3362840 1 NC_015422.1 TIGRFAM: Pyridoxamine 5'-phosphate oxidase; KEGG: dia:Dtpsy_1881 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; pyridoxamine 5'-phosphate oxidase 3362840 10484279 Alide2_3227 Alicycliphilus denitrificans K601 pyridoxamine 5'-phosphate oxidase YP_004389084.1 3362187 D 596154 CDS YP_004389085.1 330825782 10484280 complement(3362841..3363779) 1 NC_015422.1 PFAM: Auxin efflux carrier; KEGG: dia:Dtpsy_1882 auxin efflux carrier; auxin efflux carrier 3363779 10484280 Alide2_3228 Alicycliphilus denitrificans K601 auxin efflux carrier YP_004389085.1 3362841 R 596154 CDS YP_004389086.1 330825783 10484281 complement(3363911..3365131) 1 NC_015422.1 KEGG: ajs:Ajs_2035 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter; chromate transporter 3365131 10484281 Alide2_3229 Alicycliphilus denitrificans K601 chromate transporter YP_004389086.1 3363911 R 596154 CDS YP_004389087.1 330825784 10484282 complement(3365183..3366055) 1 NC_015422.1 KEGG: ajs:Ajs_2034 hypothetical protein; hypothetical protein 3366055 10484282 Alide2_3230 Alicycliphilus denitrificans K601 hypothetical protein YP_004389087.1 3365183 R 596154 CDS YP_004389088.1 330825785 10484283 complement(3366558..3368609) 1 NC_015422.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dia:Dtpsy_1842 TonB-dependent receptor; TonB-dependent receptor 3368609 10484283 Alide2_3231 Alicycliphilus denitrificans K601 TonB-dependent receptor YP_004389088.1 3366558 R 596154 CDS YP_004389089.1 330825786 10484284 complement(3369190..3369738) 1 NC_015422.1 TIGRFAM: Peptide methionine sulphoxide reductase MsrA; KEGG: ajs:Ajs_2030 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; peptide methionine sulfoxide reductase 3369738 10484284 Alide2_3232 Alicycliphilus denitrificans K601 peptide methionine sulfoxide reductase YP_004389089.1 3369190 R 596154 CDS YP_004389090.1 330825787 10484285 3369887..3370549 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_2029 TetR family transcriptional regulator; TetR family transcriptional regulator 3370549 10484285 Alide2_3233 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004389090.1 3369887 D 596154 CDS YP_004389091.1 330825788 10484286 3370600..3371310 1 NC_015422.1 KEGG: dia:Dtpsy_1837 protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 3371310 10484286 Alide2_3234 Alicycliphilus denitrificans K601 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004389091.1 3370600 D 596154 CDS YP_004389092.1 330825789 10484287 3371329..3371667 1 NC_015422.1 KEGG: dia:Dtpsy_1836 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein 3371667 10484287 Alide2_3235 Alicycliphilus denitrificans K601 rhodanese-like protein YP_004389092.1 3371329 D 596154 CDS YP_004389093.1 330825790 10484288 3371684..3373030 1 NC_015422.1 KEGG: dia:Dtpsy_1835 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein; TolC family type I secretion outer membrane protein 3373030 10484288 Alide2_3236 Alicycliphilus denitrificans K601 TolC family type I secretion outer membrane protein YP_004389093.1 3371684 D 596154 CDS YP_004389094.1 330825791 10484289 complement(3374692..3375762) 1 NC_015422.1 PFAM: Plasmid recombination enzyme; KEGG: bvi:Bcep1808_2267 plasmid recombination enzyme; plasmid recombination protein 3375762 10484289 Alide2_3237 Alicycliphilus denitrificans K601 plasmid recombination protein YP_004389094.1 3374692 R 596154 CDS YP_004389095.1 330825792 10484290 complement(3376628..3377914) 1 NC_015422.1 KEGG: mmb:Mmol_0218 hypothetical protein; hypothetical protein 3377914 10484290 Alide2_3238 Alicycliphilus denitrificans K601 hypothetical protein YP_004389095.1 3376628 R 596154 CDS YP_004389096.1 330825793 10484292 complement(3378404..3379261) 1 NC_015422.1 KEGG: axy:AXYL_03456 hypothetical protein; manually curated; PFAM: Drug/metabolite transporter; hypothetical protein 3379261 10484292 Alide2_3239 Alicycliphilus denitrificans K601 hypothetical protein YP_004389096.1 3378404 R 596154 CDS YP_004389097.1 330825794 10484293 complement(3379502..3380005) 1 NC_015422.1 PFAM: Flavodoxin/nitric oxide synthase; KEGG: dia:Dtpsy_2016 NAD(P)H dehydrogenase (quinone); flavodoxin/nitric oxide synthase 3380005 10484293 Alide2_3240 Alicycliphilus denitrificans K601 flavodoxin/nitric oxide synthase YP_004389097.1 3379502 R 596154 CDS YP_004389098.1 330825795 10484294 complement(3380038..3381939) 1 NC_015422.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: dia:Dtpsy_2017 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3381939 10484294 Alide2_3241 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004389098.1 3380038 R 596154 CDS YP_004389099.1 330825796 10484295 complement(3382371..3383171) 1 NC_015422.1 KEGG: ctt:CtCNB1_1867 amino acid ABC transporter, permease protein PEB1; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease 3383171 10484295 Alide2_3242 Alicycliphilus denitrificans K601 polar amino acid ABC transporter permease YP_004389099.1 3382371 R 596154 CDS YP_004389100.1 330825797 10484296 complement(3383168..3383830) 1 NC_015422.1 KEGG: dac:Daci_4388 polar amino acid ABC transporter inner membrane protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease 3383830 10484296 Alide2_3243 Alicycliphilus denitrificans K601 polar amino acid ABC transporter permease YP_004389100.1 3383168 R 596154 CDS YP_004389101.1 330825798 10484297 complement(3383834..3384736) 1 NC_015422.1 KEGG: ctt:CtCNB1_1865 glutamate-binding protein precursor; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 3384736 10484297 Alide2_3244 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004389101.1 3383834 R 596154 CDS YP_004389102.1 330825799 10484298 complement(3384964..3386133) 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: dia:Dtpsy_2019 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 3386133 10484298 Alide2_3245 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004389102.1 3384964 R 596154 CDS YP_004389103.1 330825800 10484299 complement(3386168..3388267) 1 NC_015422.1 KEGG: ajs:Ajs_1684 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; 3-hydroxybutyryl-CoA epimerase 3388267 10484299 Alide2_3246 Alicycliphilus denitrificans K601 3-hydroxybutyryl-CoA epimerase YP_004389103.1 3386168 R 596154 CDS YP_004389104.1 330825801 10484300 complement(3388462..3389157) 1 NC_015422.1 KEGG: dia:Dtpsy_2021 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 3389157 10484300 Alide2_3247 Alicycliphilus denitrificans K601 ABC transporter YP_004389104.1 3388462 R 596154 CDS YP_004389105.1 330825802 10484301 complement(3389157..3389945) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2022 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 3389945 10484301 Alide2_3248 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004389105.1 3389157 R 596154 CDS YP_004389106.1 330825803 10484302 complement(3389942..3391276) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2023 inner-membrane translocator; ABC transporter permease 3391276 10484302 Alide2_3249 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389106.1 3389942 R 596154 CDS YP_004389107.1 330825804 10484303 complement(3391281..3392234) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2024 inner-membrane translocator; ABC transporter permease 3392234 10484303 Alide2_3250 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389107.1 3391281 R 596154 CDS YP_004389108.1 330825805 10484304 complement(3392308..3393543) 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2025 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3393543 10484304 Alide2_3251 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004389108.1 3392308 R 596154 CDS YP_004389109.1 330825806 10484305 complement(3393684..3395321) 1 NC_015422.1 KEGG: dia:Dtpsy_2026 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 3395321 10484305 Alide2_3252 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004389109.1 3393684 R 596154 CDS YP_004389110.1 330825807 10484306 3395464..3396951 1 NC_015422.1 KEGG: ajs:Ajs_1677 hypothetical protein; HAMAP: Uncharacterised protein family UPF0061; PFAM: Uncharacterised protein family UPF0061; hypothetical protein 3396951 10484306 Alide2_3253 Alicycliphilus denitrificans K601 hypothetical protein YP_004389110.1 3395464 D 596154 CDS YP_004389111.1 330825808 10484307 3396948..3397361 1 NC_015422.1 TIGRFAM: Methionine sulphoxide reductase B; KEGG: dia:Dtpsy_2028 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B; methionine-R-sulfoxide reductase 3397361 10484307 Alide2_3254 Alicycliphilus denitrificans K601 methionine-R-sulfoxide reductase YP_004389111.1 3396948 D 596154 CDS YP_004389112.1 330825809 10484308 3397358..3397915 1 NC_015422.1 KEGG: ajs:Ajs_1675 intracellular septation protein A; TIGRFAM: Intracellular septation protein A; PFAM: Intracellular septation protein A; intracellular septation protein A 3397915 10484308 Alide2_3255 Alicycliphilus denitrificans K601 intracellular septation protein A YP_004389112.1 3397358 D 596154 CDS YP_004389113.1 330825810 10484309 3397912..3398190 1 NC_015422.1 PFAM: BolA protein; KEGG: dia:Dtpsy_2030 BolA family protein; BolA family protein 3398190 10484309 Alide2_3256 Alicycliphilus denitrificans K601 BolA family protein YP_004389113.1 3397912 D 596154 CDS YP_004389114.1 330825811 10484310 3398257..3399042 1 NC_015422.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_2031 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3399042 10484310 Alide2_3257 Alicycliphilus denitrificans K601 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004389114.1 3398257 D 596154 CDS YP_004389115.1 330825812 10484311 3399248..3399559 1 NC_015422.1 PFAM: Protein of unknown function DUF1049; KEGG: dia:Dtpsy_1389 hypothetical protein; hypothetical protein 3399559 10484311 Alide2_3258 Alicycliphilus denitrificans K601 hypothetical protein YP_004389115.1 3399248 D 596154 CDS YP_004389116.1 330825813 10484312 3399549..3400706 1 NC_015422.1 KEGG: ajs:Ajs_2472 tetratricopeptide repeat protein; hypothetical protein 3400706 10484312 Alide2_3259 Alicycliphilus denitrificans K601 hypothetical protein YP_004389116.1 3399549 D 596154 CDS YP_004389117.1 330825814 10484313 3400706..3401026 1 NC_015422.1 KEGG: ajs:Ajs_2473 hypothetical protein; hypothetical protein 3401026 10484313 Alide2_3260 Alicycliphilus denitrificans K601 hypothetical protein YP_004389117.1 3400706 D 596154 CDS YP_004389118.1 330825815 10484314 3401115..3404075 1 NC_015422.1 KEGG: dia:Dtpsy_1386 putative monovalent cation/H+ antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; Na+/H+ antiporter MnhB subunit-related protein; NADH dehydrogenase (quinone) 3404075 10484314 Alide2_3261 Alicycliphilus denitrificans K601 NADH dehydrogenase (quinone) YP_004389118.1 3401115 D 596154 CDS YP_004389119.1 330825816 10484315 3404076..3404441 1 NC_015422.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: dia:Dtpsy_1385 putative monovalent cation/H+ antiporter subunit C; NADH-ubiquinone oxidoreductase chain 4L 3404441 10484315 Alide2_3262 Alicycliphilus denitrificans K601 NADH-ubiquinone oxidoreductase chain 4L YP_004389119.1 3404076 D 596154 CDS YP_004389120.1 330825817 10484316 3404503..3406215 1 NC_015422.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: ajs:Ajs_2476 putative monovalent cation/H+ antiporter subunit D; NADH/ubiquinone/plastoquinone 3406215 10484316 Alide2_3263 Alicycliphilus denitrificans K601 NADH/ubiquinone/plastoquinone YP_004389120.1 3404503 D 596154 CDS YP_004389121.1 330825818 10484317 3406212..3406703 1 NC_015422.1 PFAM: cation antiporter; KEGG: dia:Dtpsy_1383 putative monovalent cation/H+ antiporter subunit E; cation antiporter 3406703 10484317 Alide2_3264 Alicycliphilus denitrificans K601 cation antiporter YP_004389121.1 3406212 D 596154 CDS YP_004389122.1 330825819 10484318 3406700..3406981 1 NC_015422.1 PFAM: Multiple resistance and pH regulation protein F; KEGG: dia:Dtpsy_1382 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 3406981 10484318 Alide2_3265 Alicycliphilus denitrificans K601 multiple resistance and pH regulation protein F YP_004389122.1 3406700 D 596154 CDS YP_004389123.1 330825820 10484319 3406978..3407349 1 NC_015422.1 PFAM: Na+/H+ antiporter subunit; KEGG: dia:Dtpsy_1381 Na+/H+ antiporter subunit; Na+/H+ antiporter subunit 3407349 10484319 Alide2_3266 Alicycliphilus denitrificans K601 Na+/H+ antiporter subunit YP_004389123.1 3406978 D 596154 CDS YP_004389124.1 330825821 10484320 3407352..3409127 1 NC_015422.1 PFAM: Peptidase M14, carboxypeptidase A; KEGG: dia:Dtpsy_1379 hypothetical protein; peptidase M14 carboxypeptidase A 3409127 10484320 Alide2_3267 Alicycliphilus denitrificans K601 peptidase M14 carboxypeptidase A YP_004389124.1 3407352 D 596154 CDS YP_004389125.1 330825822 10484321 3409151..3409546 1 NC_015422.1 KEGG: dia:Dtpsy_1374 camphor resistance protein CrcB; TIGRFAM: Camphor resistance CrcB protein; PFAM: Camphor resistance CrcB protein; CrcB protein 3409546 10484321 Alide2_3268 Alicycliphilus denitrificans K601 CrcB protein YP_004389125.1 3409151 D 596154 CDS YP_004389126.1 330825823 10484322 3409676..3410539 1 NC_015422.1 KEGG: ajs:Ajs_2487 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; hypothetical protein 3410539 10484322 Alide2_3269 Alicycliphilus denitrificans K601 hypothetical protein YP_004389126.1 3409676 D 596154 CDS YP_004389127.1 330825824 10484323 complement(3410554..3411717) 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1372 major facilitator superfamily MFS_1; major facilitator superfamily protein 3411717 10484323 Alide2_3270 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004389127.1 3410554 R 596154 CDS YP_004389128.1 330825825 10484324 complement(3411714..3413312) 1 NC_015422.1 PFAM: DNA recombination RmuC; KEGG: azo:azo2787 putative RumC-like protein; RmuC-domain-containing protein 3413312 10484324 Alide2_3271 Alicycliphilus denitrificans K601 RmuC-domain-containing protein YP_004389128.1 3411714 R 596154 CDS YP_004389129.1 330825826 10484325 complement(3413386..3414366) 1 NC_015422.1 KEGG: dia:Dtpsy_1370 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; glyoxylate reductase 3414366 10484325 Alide2_3272 Alicycliphilus denitrificans K601 glyoxylate reductase YP_004389129.1 3413386 R 596154 CDS YP_004389130.1 330825827 10484326 complement(3414383..3415795) 1 NC_015422.1 KEGG: ajs:Ajs_2491 putative transmembrane protein; transmembrane protein 3415795 10484326 Alide2_3273 Alicycliphilus denitrificans K601 transmembrane protein YP_004389130.1 3414383 R 596154 CDS YP_004389131.1 330825828 10484327 complement(3415843..3417042) 1 NC_015422.1 KEGG: dia:Dtpsy_1368 nicotinate phosphoribosyltransferase; TIGRFAM: Nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; nicotinate phosphoribosyltransferase 3417042 10484327 Alide2_3274 Alicycliphilus denitrificans K601 nicotinate phosphoribosyltransferase YP_004389131.1 3415843 R 596154 CDS YP_004389132.1 330825829 10484328 complement(3417192..3417665) 1 NC_015422.1 PFAM: Thioesterase superfamily; KEGG: dia:Dtpsy_1367 thioesterase superfamily protein; thioesterase superfamily protein 3417665 10484328 Alide2_3275 Alicycliphilus denitrificans K601 thioesterase superfamily protein YP_004389132.1 3417192 R 596154 CDS YP_004389133.1 330825830 10484329 3417923..3418477 1 NC_015422.1 KEGG: dia:Dtpsy_1366 phasin family protein; TIGRFAM: Phasin, subfamily 1; PFAM: Phasin; phasin family protein 3418477 10484329 Alide2_3276 Alicycliphilus denitrificans K601 phasin family protein YP_004389133.1 3417923 D 596154 CDS YP_004389134.1 330825831 10484330 3418761..3419810 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ajs:Ajs_1607 extracellular solute-binding protein; family 1 extracellular solute-binding protein 3419810 10484330 Alide2_3277 Alicycliphilus denitrificans K601 family 1 extracellular solute-binding protein YP_004389134.1 3418761 D 596154 CDS YP_004389135.1 330825832 10484331 3419925..3420683 1 NC_015422.1 KEGG: dia:Dtpsy_2108 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 3420683 10484331 Alide2_3278 Alicycliphilus denitrificans K601 3-hydroxy-2-methylbutyryl-CoA dehydrogenase YP_004389135.1 3419925 D 596154 CDS YP_004389136.1 330825833 10484335 complement(3421209..3422588) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1604 phage integrase family protein; integrase family protein 3422588 10484335 Alide2_3279 Alicycliphilus denitrificans K601 integrase family protein YP_004389136.1 3421209 R 596154 CDS YP_004389137.1 330825834 10484336 complement(3422919..3423464) 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_1603 hypothetical protein; hypothetical protein 3423464 10484336 Alide2_3280 Alicycliphilus denitrificans K601 hypothetical protein YP_004389137.1 3422919 R 596154 CDS YP_004389138.1 330825835 10484337 complement(3423461..3423907) 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_1602 hypothetical protein; hypothetical protein 3423907 10484337 Alide2_3281 Alicycliphilus denitrificans K601 hypothetical protein YP_004389138.1 3423461 R 596154 CDS YP_004389139.1 330825836 10484338 complement(3423915..3424190) 1 NC_015422.1 KEGG: ajs:Ajs_1601 hypothetical protein; hypothetical protein 3424190 10484338 Alide2_3282 Alicycliphilus denitrificans K601 hypothetical protein YP_004389139.1 3423915 R 596154 CDS YP_004389140.1 330825837 10484339 complement(3424187..3425218) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, protein D; KEGG: ajs:Ajs_1600 hypothetical protein; PRTRC system protein D 3425218 10484339 Alide2_3283 Alicycliphilus denitrificans K601 PRTRC system protein D YP_004389140.1 3424187 R 596154 CDS YP_004389141.1 330825838 10484340 3425577..3426215 1 NC_015422.1 hypothetical protein 3426215 10484340 Alide2_3284 Alicycliphilus denitrificans K601 hypothetical protein YP_004389141.1 3425577 D 596154 CDS YP_004389142.1 330825839 10484341 3426474..3427574 1 NC_015422.1 KEGG: ajs:Ajs_1599 hypothetical protein; hypothetical protein 3427574 10484341 Alide2_3285 Alicycliphilus denitrificans K601 hypothetical protein YP_004389142.1 3426474 D 596154 CDS YP_004389143.1 330825840 10484342 complement(3427579..3427932) 1 NC_015422.1 KEGG: ajs:Ajs_1598 nucleoid protein H-NS; PFAM: Histone-like nucleoid-structuring protein H-NS; SMART: Histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 3427932 10484342 Alide2_3286 Alicycliphilus denitrificans K601 histone family protein nucleoid-structuring protein H-NS YP_004389143.1 3427579 R 596154 CDS YP_004389144.1 330825841 10484343 complement(3428029..3428247) 1 NC_015422.1 hypothetical protein 3428247 10484343 Alide2_3287 Alicycliphilus denitrificans K601 hypothetical protein YP_004389144.1 3428029 R 596154 CDS YP_004389145.1 330825842 10484344 complement(3428244..3429089) 1 NC_015422.1 KEGG: ajs:Ajs_1597 UBA/ThiF-type NAD/FAD binding protein; TIGRFAM: ParB-related, ThiF-related cassette, ThiF; PFAM: UBA/THIF-type NAD/FAD binding fold; PRTRC system ThiF family protein 3429089 10484344 Alide2_3288 Alicycliphilus denitrificans K601 PRTRC system ThiF family protein YP_004389145.1 3428244 R 596154 CDS YP_004389146.1 330825843 10484345 complement(3429143..3429856) 1 NC_015422.1 KEGG: ajs:Ajs_1596 hypothetical protein; TIGRFAM: ParB-related, ThiF-related cassette, protein A; PFAM: Domain of unknown function DUF2016; PRTRC system protein A 3429856 10484345 Alide2_3289 Alicycliphilus denitrificans K601 PRTRC system protein A YP_004389146.1 3429143 R 596154 CDS YP_004389147.1 330825844 10484346 complement(3429856..3430596) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, protein B; KEGG: ajs:Ajs_1595 hypothetical protein; PRTRC system protein B 3430596 10484346 Alide2_3290 Alicycliphilus denitrificans K601 PRTRC system protein B YP_004389147.1 3429856 R 596154 CDS YP_004389148.1 330825845 10484347 complement(3430625..3431668) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, protein F; KEGG: ajs:Ajs_1594 hypothetical protein; PRTRC system protein F 3431668 10484347 Alide2_3291 Alicycliphilus denitrificans K601 PRTRC system protein F YP_004389148.1 3430625 R 596154 CDS YP_004389149.1 330825846 10484348 complement(3431680..3432123) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, protein C; KEGG: ajs:Ajs_1593 hypothetical protein; ParB-related,ThiF-related cassette, protein C 3432123 10484348 Alide2_3292 Alicycliphilus denitrificans K601 ParB-related,ThiF-related cassette, protein C YP_004389149.1 3431680 R 596154 CDS YP_004389150.1 330825847 10484349 complement(3432220..3432702) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, protein E; KEGG: ajs:Ajs_1592 hypothetical protein; PRTRC system protein E 3432702 10484349 Alide2_3293 Alicycliphilus denitrificans K601 PRTRC system protein E YP_004389150.1 3432220 R 596154 CDS YP_004389151.1 330825848 10484350 complement(3432812..3434575) 1 NC_015422.1 TIGRFAM: ParB-related, ThiF-related cassette, ParB; ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_1591 ParB family protein; SMART: ParB-like nuclease; PRTRC system ParB family protein 3434575 10484350 Alide2_3294 Alicycliphilus denitrificans K601 PRTRC system ParB family protein YP_004389151.1 3432812 R 596154 CDS YP_004389152.1 330825849 10484351 complement(3434660..3435160) 1 NC_015422.1 KEGG: ajs:Ajs_1590 hypothetical protein; hypothetical protein 3435160 10484351 Alide2_3295 Alicycliphilus denitrificans K601 hypothetical protein YP_004389152.1 3434660 R 596154 CDS YP_004389153.1 330825850 10484352 3435384..3435788 1 NC_015422.1 KEGG: dia:Dtpsy_2126 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 3435788 10484352 Alide2_3296 Alicycliphilus denitrificans K601 histone family protein DNA-binding protein YP_004389153.1 3435384 D 596154 CDS YP_004389154.1 330825851 10484353 3435861..3436181 1 NC_015422.1 KEGG: dia:Dtpsy_2127 hypothetical protein; hypothetical protein 3436181 10484353 Alide2_3297 Alicycliphilus denitrificans K601 hypothetical protein YP_004389154.1 3435861 D 596154 CDS YP_004389155.1 330825852 10484354 complement(3436225..3437070) 1 NC_015422.1 KEGG: ajs:Ajs_1585 putative EA31 gene protein, phage lambda; hypothetical protein 3437070 10484354 Alide2_3298 Alicycliphilus denitrificans K601 hypothetical protein YP_004389155.1 3436225 R 596154 CDS YP_004389156.1 330825853 10484355 complement(3437072..3438694) 1 NC_015422.1 KEGG: ajs:Ajs_1584 putative EA59 gene protein, phage lambda; hypothetical protein 3438694 10484355 Alide2_3299 Alicycliphilus denitrificans K601 hypothetical protein YP_004389156.1 3437072 R 596154 CDS YP_004389157.1 330825854 10484356 complement(3438824..3439669) 1 NC_015422.1 manually curated; KEGG: dia:Dtpsy_2166 hypothetical protein; hypothetical protein 3439669 10484356 Alide2_3300 Alicycliphilus denitrificans K601 hypothetical protein YP_004389157.1 3438824 R 596154 CDS YP_004389158.1 330825855 10484357 complement(3439666..3440949) 1 NC_015422.1 KEGG: rfr:Rfer_1072 hypothetical protein; hypothetical protein 3440949 10484357 Alide2_3301 Alicycliphilus denitrificans K601 hypothetical protein YP_004389158.1 3439666 R 596154 CDS YP_004389159.1 330825856 10484358 complement(3440986..3441849) 1 NC_015422.1 PFAM: Phage Gp37Gp68; KEGG: dia:Dtpsy_2170 Gp37Gp68 family protein; Gp37Gp68 family protein 3441849 10484358 Alide2_3302 Alicycliphilus denitrificans K601 Gp37Gp68 family protein YP_004389159.1 3440986 R 596154 CDS YP_004389160.1 330825857 10484359 complement(3441961..3442905) 1 NC_015422.1 PFAM: Protein of unknown function DUF1814; KEGG: dia:Dtpsy_2171 hypothetical protein; hypothetical protein 3442905 10484359 Alide2_3303 Alicycliphilus denitrificans K601 hypothetical protein YP_004389160.1 3441961 R 596154 CDS YP_004389161.1 330825858 10484360 complement(3442898..3443509) 1 NC_015422.1 KEGG: vei:Veis_2691 hypothetical protein; hypothetical protein 3443509 10484360 Alide2_3304 Alicycliphilus denitrificans K601 hypothetical protein YP_004389161.1 3442898 R 596154 CDS YP_004389162.1 330825859 10484361 3444024..3444356 1 NC_015422.1 KEGG: dia:Dtpsy_2173 hypothetical protein; hypothetical protein 3444356 10484361 Alide2_3305 Alicycliphilus denitrificans K601 hypothetical protein YP_004389162.1 3444024 D 596154 CDS YP_004389163.1 330825860 10484362 3444664..3445338 1 NC_015422.1 KEGG: dia:Dtpsy_2174 hypothetical protein; hypothetical protein 3445338 10484362 Alide2_3306 Alicycliphilus denitrificans K601 hypothetical protein YP_004389163.1 3444664 D 596154 CDS YP_004389164.1 330825861 10484363 complement(3445411..3446823) 1 NC_015422.1 KEGG: dia:Dtpsy_2175 hypothetical protein; hypothetical protein 3446823 10484363 Alide2_3307 Alicycliphilus denitrificans K601 hypothetical protein YP_004389164.1 3445411 R 596154 CDS YP_004389165.1 330825862 10484364 complement(3446838..3447749) 1 NC_015422.1 KEGG: dia:Dtpsy_2176 hypothetical protein; hypothetical protein 3447749 10484364 Alide2_3308 Alicycliphilus denitrificans K601 hypothetical protein YP_004389165.1 3446838 R 596154 CDS YP_004389166.1 330825863 10484365 3448201..3453243 1 NC_015422.1 SMART: DEAD-like helicase, N-terminal; KEGG: ajs:Ajs_1578 helicase domain-containing protein; DEAD/DEAH box helicase 3453243 10484365 Alide2_3309 Alicycliphilus denitrificans K601 DEAD/DEAH box helicase YP_004389166.1 3448201 D 596154 CDS YP_004389167.1 330825864 10484366 3453809..3454327 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_1576 hypothetical protein; hypothetical protein 3454327 10484366 Alide2_3310 Alicycliphilus denitrificans K601 hypothetical protein YP_004389167.1 3453809 D 596154 CDS YP_004389168.1 330825865 10484367 complement(3454298..3454528) 1 NC_015422.1 KEGG: ajs:Ajs_1575 hypothetical protein; hypothetical protein 3454528 10484367 Alide2_3311 Alicycliphilus denitrificans K601 hypothetical protein YP_004389168.1 3454298 R 596154 CDS YP_004389169.1 330825866 10484368 3454655..3455167 1 NC_015422.1 KEGG: ajs:Ajs_1574 hypothetical protein; hypothetical protein 3455167 10484368 Alide2_3312 Alicycliphilus denitrificans K601 hypothetical protein YP_004389169.1 3454655 D 596154 CDS YP_004389170.1 330825867 10484369 complement(3455274..3455486) 1 NC_015422.1 KEGG: ajs:Ajs_1573 hypothetical protein; hypothetical protein 3455486 10484369 Alide2_3313 Alicycliphilus denitrificans K601 hypothetical protein YP_004389170.1 3455274 R 596154 CDS YP_004389171.1 330825868 10484370 3456028..3456336 1 NC_015422.1 KEGG: ajs:Ajs_1572 hypothetical protein; hypothetical protein 3456336 10484370 Alide2_3314 Alicycliphilus denitrificans K601 hypothetical protein YP_004389171.1 3456028 D 596154 CDS YP_004389172.1 330825869 10484371 complement(3456389..3458857) 1 NC_015422.1 KEGG: ajs:Ajs_1571 putative DNA repair ATPase; DNA repair ATPase 3458857 10484371 Alide2_3315 Alicycliphilus denitrificans K601 DNA repair ATPase YP_004389172.1 3456389 R 596154 CDS YP_004389173.1 330825870 10484372 3459072..3459473 1 NC_015422.1 KEGG: ajs:Ajs_1570 hypothetical protein; hypothetical protein 3459473 10484372 Alide2_3316 Alicycliphilus denitrificans K601 hypothetical protein YP_004389173.1 3459072 D 596154 CDS YP_004389174.1 330825871 10484373 3459470..3460435 1 NC_015422.1 PFAM: Protein of unknown function DUF1814; KEGG: ajs:Ajs_1569 hypothetical protein; hypothetical protein 3460435 10484373 Alide2_3317 Alicycliphilus denitrificans K601 hypothetical protein YP_004389174.1 3459470 D 596154 CDS YP_004389175.1 330825872 10484374 complement(3460486..3461766) 1 NC_015422.1 PFAM: Metallo-dependent phosphatase; KEGG: ajs:Ajs_1567 metallophosphoesterase; metallophosphoesterase 3461766 10484374 Alide2_3318 Alicycliphilus denitrificans K601 metallophosphoesterase YP_004389175.1 3460486 R 596154 CDS YP_004389176.1 330825873 10484375 complement(3461778..3463061) 1 NC_015422.1 KEGG: ajs:Ajs_1566 hypothetical protein; hypothetical protein 3463061 10484375 Alide2_3319 Alicycliphilus denitrificans K601 hypothetical protein YP_004389176.1 3461778 R 596154 CDS YP_004389177.1 330825874 10484376 3463353..3464306 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1565 phage integrase family protein; integrase family protein 3464306 10484376 Alide2_3320 Alicycliphilus denitrificans K601 integrase family protein YP_004389177.1 3463353 D 596154 CDS YP_004389178.1 330825875 10484377 3464312..3465556 1 NC_015422.1 PFAM: Protein of unknown function DUF1173; KEGG: ajs:Ajs_1564 hypothetical protein; hypothetical protein 3465556 10484377 Alide2_3321 Alicycliphilus denitrificans K601 hypothetical protein YP_004389178.1 3464312 D 596154 CDS YP_004389179.1 330825876 10484378 complement(3465615..3465854) 1 NC_015422.1 PFAM: Prophage CP4-57 regulatory; KEGG: ajs:Ajs_1562 phage transcriptional regulator, AlpA; Prophage CP4-57 regulatory protein 3465854 10484378 Alide2_3322 Alicycliphilus denitrificans K601 Prophage CP4-57 regulatory protein YP_004389179.1 3465615 R 596154 CDS YP_004389180.1 330825877 10484379 complement(3466282..3467067) 1 NC_015422.1 KEGG: ajs:Ajs_1561 hypothetical protein; hypothetical protein 3467067 10484379 Alide2_3323 Alicycliphilus denitrificans K601 hypothetical protein YP_004389180.1 3466282 R 596154 CDS YP_004389181.1 330825878 10484380 3467558..3468139 1 NC_015422.1 KEGG: ajs:Ajs_1560 hypothetical protein; hypothetical protein 3468139 10484380 Alide2_3324 Alicycliphilus denitrificans K601 hypothetical protein YP_004389181.1 3467558 D 596154 CDS YP_004389182.1 330825879 10484381 3468173..3468394 1 NC_015422.1 KEGG: ajs:Ajs_1559 hypothetical protein; hypothetical protein 3468394 10484381 Alide2_3325 Alicycliphilus denitrificans K601 hypothetical protein YP_004389182.1 3468173 D 596154 CDS YP_004389183.1 330825880 10484382 3468391..3468738 1 NC_015422.1 KEGG: ajs:Ajs_1558 hypothetical protein; hypothetical protein 3468738 10484382 Alide2_3326 Alicycliphilus denitrificans K601 hypothetical protein YP_004389183.1 3468391 D 596154 CDS YP_004389184.1 330825881 10484384 3470430..3471434 1 NC_015422.1 KEGG: ajs:Ajs_1556 phage P4 alpha zinc-binding domain-containing protein; PFAM: Phage P4 alpha, zinc-binding; SMART: Phage P4 alpha, zinc-binding; P4 alpha zinc-binding domain-containing protein 3471434 10484384 Alide2_3328 Alicycliphilus denitrificans K601 P4 alpha zinc-binding domain-containing protein YP_004389184.1 3470430 D 596154 CDS YP_004389185.1 330825882 10484385 3471719..3472783 1 NC_015422.1 KEGG: ajs:Ajs_1554 hypothetical protein; hypothetical protein 3472783 10484385 Alide2_3329 Alicycliphilus denitrificans K601 hypothetical protein YP_004389185.1 3471719 D 596154 CDS YP_004389186.1 330825883 10484386 complement(3472865..3473434) 1 NC_015422.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: ajs:Ajs_1553 putative phage repressor; peptidase S24/S26A/S26B 3473434 10484386 Alide2_3330 Alicycliphilus denitrificans K601 peptidase S24/S26A/S26B YP_004389186.1 3472865 R 596154 CDS YP_004389187.1 330825884 10484387 3473876..3474190 1 NC_015422.1 KEGG: ajs:Ajs_1552 hypothetical protein; hypothetical protein 3474190 10484387 Alide2_3331 Alicycliphilus denitrificans K601 hypothetical protein YP_004389187.1 3473876 D 596154 CDS YP_004389188.1 330825885 10484388 3474191..3474853 1 NC_015422.1 KEGG: ajs:Ajs_1551 hypothetical protein; hypothetical protein 3474853 10484388 Alide2_3332 Alicycliphilus denitrificans K601 hypothetical protein YP_004389188.1 3474191 D 596154 CDS YP_004389189.1 330825886 10484389 3474907..3476700 1 NC_015422.1 PFAM: Uncharacterised protein family, helicase/relaxase, putative; KEGG: ajs:Ajs_1550 FHA domain-containing protein; Relaxase 3476700 10484389 Alide2_3333 Alicycliphilus denitrificans K601 Relaxase YP_004389189.1 3474907 D 596154 CDS YP_004389190.1 330825887 10484390 3476702..3478603 1 NC_015422.1 TIGRFAM: Conjugative coupling factor TraG/TraD; KEGG: ajs:Ajs_1549 hypothetical protein; conjugative coupling factor TraD 3478603 10484390 Alide2_3334 Alicycliphilus denitrificans K601 conjugative coupling factor TraD YP_004389190.1 3476702 D 596154 CDS YP_004389191.1 330825888 10484391 3478600..3479223 1 NC_015422.1 KEGG: ajs:Ajs_1548 hypothetical protein; hypothetical protein 3479223 10484391 Alide2_3335 Alicycliphilus denitrificans K601 hypothetical protein YP_004389191.1 3478600 D 596154 CDS YP_004389192.1 330825889 10484392 complement(3479239..3479484) 1 NC_015422.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: ajs:Ajs_1547 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 3479484 10484392 Alide2_3336 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004389192.1 3479239 R 596154 CDS YP_004389193.1 330825890 10484393 3479664..3479996 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_1546 hypothetical protein; hypothetical protein 3479996 10484393 Alide2_3337 Alicycliphilus denitrificans K601 hypothetical protein YP_004389193.1 3479664 D 596154 CDS YP_004389194.1 330825891 10484394 3480175..3480672 1 NC_015422.1 KEGG: ajs:Ajs_1545 hypothetical protein; hypothetical protein 3480672 10484394 Alide2_3338 Alicycliphilus denitrificans K601 hypothetical protein YP_004389194.1 3480175 D 596154 CDS YP_004389195.1 330825892 10484395 3480812..3481339 1 NC_015422.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_1544 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 3481339 10484395 Alide2_3339 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004389195.1 3480812 D 596154 CDS YP_004389196.1 330825893 10484396 3481856..3482218 1 NC_015422.1 KEGG: ajs:Ajs_1542 hypothetical protein; hypothetical protein 3482218 10484396 Alide2_3340 Alicycliphilus denitrificans K601 hypothetical protein YP_004389196.1 3481856 D 596154 CDS YP_004389197.1 330825894 10484397 3482250..3482549 1 NC_015422.1 KEGG: ajs:Ajs_1541 TraL family protein; TIGRFAM: Type IV conjugative transfer system, protein TraL; PFAM: Type IV conjugative transfer system, protein TraL; type IV conjugative transfer system protein TraL 3482549 10484397 Alide2_3341 Alicycliphilus denitrificans K601 type IV conjugative transfer system protein TraL YP_004389197.1 3482250 D 596154 CDS YP_004389198.1 330825895 10484398 3482564..3483130 1 NC_015422.1 TIGRFAM: Pilus assembly TraE; KEGG: ajs:Ajs_1540 plasmid-like conjugative transfer protein TraE; type IV conjugative transfer system protein TraE 3483130 10484398 Alide2_3342 Alicycliphilus denitrificans K601 type IV conjugative transfer system protein TraE YP_004389198.1 3482564 D 596154 CDS YP_004389199.1 330825896 10484399 3483117..3484124 1 NC_015422.1 KEGG: ajs:Ajs_1539 hypothetical protein; hypothetical protein 3484124 10484399 Alide2_3343 Alicycliphilus denitrificans K601 hypothetical protein YP_004389199.1 3483117 D 596154 CDS YP_004389200.1 330825897 10484400 3484121..3485557 1 NC_015422.1 KEGG: ajs:Ajs_1538 TraB pilus assembly family protein; TraB pilus assembly family protein 3485557 10484400 Alide2_3344 Alicycliphilus denitrificans K601 TraB pilus assembly family protein YP_004389200.1 3484121 D 596154 CDS YP_004389201.1 330825898 10484401 3485541..3486380 1 NC_015422.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_1537 periplasmic thiol:disulfide interchange protein; disulfide bond isomerase DsbC/G 3486380 10484401 Alide2_3345 Alicycliphilus denitrificans K601 disulfide bond isomerase DsbC/G YP_004389201.1 3485541 D 596154 CDS YP_004389202.1 330825899 10484402 3486377..3487042 1 NC_015422.1 KEGG: ajs:Ajs_1536 hypothetical protein; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV; type IV conjugative transfer system protein TraV 3487042 10484402 Alide2_3346 Alicycliphilus denitrificans K601 type IV conjugative transfer system protein TraV YP_004389202.1 3486377 D 596154 CDS YP_004389203.1 330825900 10484403 3487050..3489632 1 NC_015422.1 TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_1535 hypothetical protein; type-IV secretion system protein TraC 3489632 10484403 Alide2_3347 Alicycliphilus denitrificans K601 type-IV secretion system protein TraC YP_004389203.1 3487050 D 596154 CDS YP_004389204.1 330825901 10484404 3489629..3489985 1 NC_015422.1 KEGG: ajs:Ajs_1534 hypothetical protein; hypothetical protein 3489985 10484404 Alide2_3348 Alicycliphilus denitrificans K601 hypothetical protein YP_004389204.1 3489629 D 596154 CDS YP_004389205.1 330825902 10484405 3489982..3490575 1 NC_015422.1 KEGG: ajs:Ajs_1533 hypothetical protein; TIGRFAM: Peptidase S26C, conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region; conjugative transfer signal peptidase TraF 3490575 10484405 Alide2_3349 Alicycliphilus denitrificans K601 conjugative transfer signal peptidase TraF YP_004389205.1 3489982 D 596154 CDS YP_004389206.1 330825903 10484406 3490586..3490981 1 NC_015422.1 KEGG: ajs:Ajs_1532 hypothetical protein; hypothetical protein 3490981 10484406 Alide2_3350 Alicycliphilus denitrificans K601 hypothetical protein YP_004389206.1 3490586 D 596154 CDS YP_004389207.1 330825904 10484407 3490978..3491613 1 NC_015422.1 TIGRFAM: Type-F conjugative transfer system protein TraW; KEGG: ajs:Ajs_1531 membrane lipoprotein lipid attachment site; type-F conjugative transfer system protein TraW 3491613 10484407 Alide2_3351 Alicycliphilus denitrificans K601 type-F conjugative transfer system protein TraW YP_004389207.1 3490978 D 596154 CDS YP_004389208.1 330825905 10484408 3491610..3492635 1 NC_015422.1 PFAM: TraU; KEGG: ajs:Ajs_1530 TraU family protein; TraU family protein 3492635 10484408 Alide2_3352 Alicycliphilus denitrificans K601 TraU family protein YP_004389208.1 3491610 D 596154 CDS YP_004389209.1 330825906 10484409 3492622..3493386 1 NC_015422.1 KEGG: ajs:Ajs_1529 hypothetical protein; TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC, subgroup; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; type-F conjugative transfer system pilin assembly protein TrbC 3493386 10484409 Alide2_3353 Alicycliphilus denitrificans K601 type-F conjugative transfer system pilin assembly protein TrbC YP_004389209.1 3492622 D 596154 CDS YP_004389210.1 330825907 10484410 3493396..3495813 1 NC_015422.1 KEGG: ajs:Ajs_1528 conjugal transfer mating pair stabilization protein TraN; conjugal transfer mating pair stabilization protein TraN 3495813 10484410 Alide2_3354 Alicycliphilus denitrificans K601 conjugal transfer mating pair stabilization protein TraN YP_004389210.1 3493396 D 596154 CDS YP_004389211.1 330825908 10484411 3495810..3496199 1 NC_015422.1 KEGG: ajs:Ajs_1527 hypothetical protein; hypothetical protein 3496199 10484411 Alide2_3355 Alicycliphilus denitrificans K601 hypothetical protein YP_004389211.1 3495810 D 596154 CDS YP_004389212.1 330825909 10484412 3496210..3497085 1 NC_015422.1 KEGG: ajs:Ajs_1526 hypothetical protein; TIGRFAM: Type IV conjugative transfer system protein TraF; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; TraF-like protein 3497085 10484412 Alide2_3356 Alicycliphilus denitrificans K601 TraF-like protein YP_004389212.1 3496210 D 596154 CDS YP_004389213.1 330825910 10484413 3497095..3498543 1 NC_015422.1 PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_1525 TraH family protein; TraH family protein 3498543 10484413 Alide2_3357 Alicycliphilus denitrificans K601 TraH family protein YP_004389213.1 3497095 D 596154 CDS YP_004389214.1 330825911 10484414 3498565..3501336 1 NC_015422.1 PFAM: TraG-like, N-terminal; KEGG: ajs:Ajs_1524 TraG domain-containing protein; TraG domain-containing protein 3501336 10484414 Alide2_3358 Alicycliphilus denitrificans K601 TraG domain-containing protein YP_004389214.1 3498565 D 596154 CDS YP_004389215.1 330825912 10484415 complement(3501342..3501692) 1 NC_015422.1 KEGG: ajs:Ajs_1521 hypothetical protein; hypothetical protein 3501692 10484415 Alide2_3359 Alicycliphilus denitrificans K601 hypothetical protein YP_004389215.1 3501342 R 596154 CDS YP_004389216.1 330825913 10484416 complement(3501739..3502440) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1565 phage integrase family protein; integrase family protein 3502440 10484416 Alide2_3360 Alicycliphilus denitrificans K601 integrase family protein YP_004389216.1 3501739 R 596154 CDS YP_004389217.1 330825914 10484417 complement(3502609..3503034) 1 NC_015422.1 PFAM: Transposase, IS4-like; KEGG: pol:Bpro_4722 IS4 family transposase; transposase IS4 family protein 3503034 10484417 Alide2_3361 Alicycliphilus denitrificans K601 transposase IS4 family protein YP_004389217.1 3502609 R 596154 CDS YP_004389218.1 330825915 10484418 3503131..3503418 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_1490 hypothetical protein; transposase IS3/IS911 family protein 3503418 10484418 Alide2_3362 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389218.1 3503131 D 596154 CDS YP_004389219.1 330825916 10484421 3504073..3504933 1 NC_015422.1 KEGG: ajs:Ajs_1514 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related; polyphosphate kinase 2 3504933 10484421 Alide2_3365 Alicycliphilus denitrificans K601 polyphosphate kinase 2 YP_004389219.1 3504073 D 596154 CDS YP_004389220.1 330825917 10484422 3504953..3507406 1 NC_015422.1 PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; manually curated; KEGG: ajs:Ajs_1513 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; heavy metal translocating P-type ATPase 3507406 10484422 Alide2_3366 Alicycliphilus denitrificans K601 heavy metal translocating P-type ATPase YP_004389220.1 3504953 D 596154 CDS YP_004389221.1 330825918 10484423 3507498..3508778 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1512 major facilitator superfamily transporter; major facilitator superfamily protein 3508778 10484423 Alide2_3367 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004389221.1 3507498 D 596154 CDS YP_004389222.1 330825919 10484424 3508781..3509395 1 NC_015422.1 PFAM: LemA; KEGG: ajs:Ajs_1511 LemA family protein; LemA family protein 3509395 10484424 Alide2_3368 Alicycliphilus denitrificans K601 LemA family protein YP_004389222.1 3508781 D 596154 CDS YP_004389223.1 330825920 10484425 3509392..3510276 1 NC_015422.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1510 hypothetical protein; hypothetical protein 3510276 10484425 Alide2_3369 Alicycliphilus denitrificans K601 hypothetical protein YP_004389223.1 3509392 D 596154 CDS YP_004389224.1 330825921 10484426 3510279..3510776 1 NC_015422.1 PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1509 hypothetical protein; hypothetical protein 3510776 10484426 Alide2_3370 Alicycliphilus denitrificans K601 hypothetical protein YP_004389224.1 3510279 D 596154 CDS YP_004389225.1 330825922 10484427 3510802..3512160 1 NC_015422.1 KEGG: ajs:Ajs_1508 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 3512160 10484427 Alide2_3371 Alicycliphilus denitrificans K601 beta-lactamase domain-containing protein YP_004389225.1 3510802 D 596154 CDS YP_004389226.1 330825923 10484428 3512157..3513692 1 NC_015422.1 KEGG: ajs:Ajs_1507 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase, C-terminal; Glycosyl transferase, family 3; TIGRFAM: Thymidine phosphorylase, type 2; HAMAP: Thymidine phosphorylase, type 2; SMART: Pyrimidine nucleoside phosphorylase, C-terminal; thymidine phosphorylase 3513692 10484428 Alide2_3372 Alicycliphilus denitrificans K601 thymidine phosphorylase YP_004389226.1 3512157 D 596154 CDS YP_004389227.1 330825924 10484429 3513689..3514588 1 NC_015422.1 KEGG: ajs:Ajs_1506 phosphoribosylpyrophosphate synthetase; TIGRFAM: Phosphoribosyl pyrophosphokinase; ribose-phosphate pyrophosphokinase 3514588 10484429 Alide2_3373 Alicycliphilus denitrificans K601 ribose-phosphate pyrophosphokinase YP_004389227.1 3513689 D 596154 CDS YP_004389228.1 330825925 10484430 3514585..3515748 1 NC_015422.1 KEGG: ajs:Ajs_1505 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; peptidase S1 and S6 chymotrypsin/Hap 3515748 10484430 Alide2_3374 Alicycliphilus denitrificans K601 peptidase S1 and S6 chymotrypsin/Hap YP_004389228.1 3514585 D 596154 CDS YP_004389229.1 330825926 10484431 3515758..3516216 1 NC_015422.1 KEGG: dba:Dbac_2177 carbamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; carbamate kinase 3516216 10484431 Alide2_3375 Alicycliphilus denitrificans K601 carbamate kinase YP_004389229.1 3515758 D 596154 CDS YP_004389230.1 330825927 10484432 3516331..3516975 1 NC_015422.1 KEGG: ajs:Ajs_1500 hypothetical protein; hypothetical protein 3516975 10484432 Alide2_3376 Alicycliphilus denitrificans K601 hypothetical protein YP_004389230.1 3516331 D 596154 CDS YP_004389231.1 330825928 10484433 complement(3517089..3518774) 1 NC_015422.1 TIGRFAM: Mercury reductase, MerA; KEGG: mms:mma_1749 putative mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; mercuric reductase 3518774 10484433 Alide2_3377 Alicycliphilus denitrificans K601 mercuric reductase YP_004389231.1 3517089 R 596154 CDS YP_004389232.1 330825929 10484435 complement(3518935..3519210) 1 NC_015422.1 KEGG: shn:Shewana3_4343 mercuric transport protein periplasmic component; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport periplasmic protein 3519210 10484435 Alide2_3379 Alicycliphilus denitrificans K601 mercuric transport periplasmic protein YP_004389232.1 3518935 R 596154 CDS YP_004389233.1 330825930 10484436 complement(3519223..3519573) 1 NC_015422.1 PFAM: Mercuric transport protein MerT; KEGG: net:Neut_2570 putative mercuric transport protein; mercuric transport protein MerT 3519573 10484436 Alide2_3380 Alicycliphilus denitrificans K601 mercuric transport protein MerT YP_004389233.1 3519223 R 596154 CDS YP_004389234.1 330825931 10484437 3519645..3520067 1 NC_015422.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: net:Neut_2571 putative transcriptional regulator MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 3520067 10484437 Alide2_3381 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004389234.1 3519645 D 596154 CDS YP_004389235.1 330825932 10484439 complement(3521840..3523102) 1 NC_015422.1 KEGG: ajs:Ajs_1486 hypothetical protein; hypothetical protein 3523102 10484439 Alide2_3383 Alicycliphilus denitrificans K601 hypothetical protein YP_004389235.1 3521840 R 596154 CDS YP_004389236.1 330825933 10484440 3523530..3523838 1 NC_015422.1 PFAM: Flagellar hook-basal body complex protein FliE; manually curated; TIGRFAM: Flagellar hook-basal body complex protein FliE; KEGG: ajs:Ajs_1485 flagellar hook-basal body complex subunit FliE; HAMAP: Flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex protein fliE 3523838 10484440 Alide2_3384 Alicycliphilus denitrificans K601 flagellar hook-basal body complex protein fliE YP_004389236.1 3523530 D 596154 CDS YP_004389237.1 330825934 10484441 complement(3523938..3524228) 1 NC_015422.1 KEGG: dia:Dtpsy_2181 hypothetical protein; hypothetical protein 3524228 10484441 Alide2_3385 Alicycliphilus denitrificans K601 hypothetical protein YP_004389237.1 3523938 R 596154 CDS YP_004389238.1 330825935 10484443 complement(3524618..3527749) 1 NC_015422.1 KEGG: dia:Dtpsy_2183 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 3527749 10484443 Alide2_3387 Alicycliphilus denitrificans K601 CzcA family heavy metal efflux pump YP_004389238.1 3524618 R 596154 CDS YP_004389239.1 330825936 10484446 3528438..3528716 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: dia:Dtpsy_3180 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 3528716 10484446 Alide2_3390 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389239.1 3528438 D 596154 CDS YP_004389240.1 330825937 10484447 3528764..3529588 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: dia:Dtpsy_3179 integrase catalytic region; integrase catalytic subunit 3529588 10484447 Alide2_3391 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004389240.1 3528764 D 596154 CDS YP_004389241.1 330825938 10484448 3529763..3530116 1 NC_015422.1 KEGG: dia:Dtpsy_2203 hypothetical protein; hypothetical protein 3530116 10484448 Alide2_3392 Alicycliphilus denitrificans K601 hypothetical protein YP_004389241.1 3529763 D 596154 CDS YP_004389242.1 330825939 10484450 3530753..3531418 1 NC_015422.1 KEGG: dia:Dtpsy_2204 transcriptional regulator, ArsR family; PFAM: Rhodanese-like; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; Rhodanese-like; rhodanese-like protein 3531418 10484450 Alide2_3394 Alicycliphilus denitrificans K601 rhodanese-like protein YP_004389242.1 3530753 D 596154 CDS YP_004389243.1 330825940 10484451 3531424..3531996 1 NC_015422.1 PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_2205 methyltransferase type 11; type 11 methyltransferase 3531996 10484451 Alide2_3395 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004389243.1 3531424 D 596154 CDS YP_004389244.1 330825941 10484452 3532019..3532375 1 NC_015422.1 PFAM: Sulphur relay, DsrE/F-like protein; KEGG: dia:Dtpsy_2206 DsrE family protein; DsrE family protein 3532375 10484452 Alide2_3396 Alicycliphilus denitrificans K601 DsrE family protein YP_004389244.1 3532019 D 596154 CDS YP_004389245.1 330825942 10484453 3532401..3533060 1 NC_015422.1 KEGG: dia:Dtpsy_2207 methyltransferase type 11; manually curated; PFAM: Methyltransferase type 11; type 11 methyltransferase 3533060 10484453 Alide2_3397 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004389245.1 3532401 D 596154 CDS YP_004389246.1 330825943 10484455 3533957..3535258 1 NC_015422.1 PFAM: Outer membrane efflux protein; KEGG: dia:Dtpsy_2209 outer membrane efflux protein; outer membrane efflux protein 3535258 10484455 Alide2_3399 Alicycliphilus denitrificans K601 outer membrane efflux protein YP_004389246.1 3533957 D 596154 CDS YP_004389247.1 330825944 10484456 3535262..3536863 1 NC_015422.1 KEGG: dia:Dtpsy_2210 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 3536863 10484456 Alide2_3400 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004389247.1 3535262 D 596154 CDS YP_004389248.1 330825945 10484457 3536874..3537215 1 NC_015422.1 KEGG: dia:Dtpsy_2211 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 3537215 10484457 Alide2_3401 Alicycliphilus denitrificans K601 nitrogen regulatory protein P-II YP_004389248.1 3536874 D 596154 CDS YP_004389249.1 330825946 10484458 3537239..3540424 1 NC_015422.1 KEGG: dia:Dtpsy_2212 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 3540424 10484458 Alide2_3402 Alicycliphilus denitrificans K601 CzcA family heavy metal efflux pump YP_004389249.1 3537239 D 596154 CDS YP_004389250.1 330825947 10484459 3540499..3543006 1 NC_015422.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_2214 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 3543006 10484459 Alide2_3403 Alicycliphilus denitrificans K601 heavy metal translocating P-type ATPase YP_004389250.1 3540499 D 596154 CDS YP_004389251.1 330825948 10484460 3543128..3543814 1 NC_015422.1 TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: dia:Dtpsy_2215 two component heavy metal response transcriptional regulator, winged helix family; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; two component heavy metal response transcriptional regulator 3543814 10484460 Alide2_3404 Alicycliphilus denitrificans K601 two component heavy metal response transcriptional regulator YP_004389251.1 3543128 D 596154 CDS YP_004389252.1 330825949 10484461 3543811..3545184 1 NC_015422.1 TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; KEGG: dia:Dtpsy_2216 heavy metal sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; heavy metal sensor signal transduction histidine kinase 3545184 10484461 Alide2_3405 Alicycliphilus denitrificans K601 heavy metal sensor signal transduction histidine kinase YP_004389252.1 3543811 D 596154 CDS YP_004389253.1 330825950 10484462 complement(3545378..3546424) 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2217 protein of unknown function DUF6 transmembrane; hypothetical protein 3546424 10484462 Alide2_3406 Alicycliphilus denitrificans K601 hypothetical protein YP_004389253.1 3545378 R 596154 CDS YP_004389254.1 330825951 10484463 3546709..3547062 1 NC_015422.1 KEGG: dia:Dtpsy_2218 hypothetical protein; hypothetical protein 3547062 10484463 Alide2_3407 Alicycliphilus denitrificans K601 hypothetical protein YP_004389254.1 3546709 D 596154 CDS YP_004389255.1 330825952 10484464 3547513..3547866 1 NC_015422.1 KEGG: dia:Dtpsy_2221 hypothetical protein; hypothetical protein 3547866 10484464 Alide2_3408 Alicycliphilus denitrificans K601 hypothetical protein YP_004389255.1 3547513 D 596154 CDS YP_004389256.1 330825953 10484465 complement(3547993..3549120) 1 NC_015422.1 KEGG: dia:Dtpsy_2222 ISRSO5-transposase protein; ISRSO5-transposase protein 3549120 10484465 Alide2_3409 Alicycliphilus denitrificans K601 ISRSO5-transposase protein YP_004389256.1 3547993 R 596154 CDS YP_004389257.1 330825954 10484470 complement(3550036..3551439) 1 NC_015422.1 TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: dia:Dtpsy_2224 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 3551439 10484470 Alide2_3411 Alicycliphilus denitrificans K601 glutamyl-tRNA synthetase YP_004389257.1 3550036 R 596154 CDS YP_004389258.1 330825955 10484471 complement(3551436..3552650) 1 NC_015422.1 TIGRFAM: O-succinylhomoserine sulfhydrylase; KEGG: dac:Daci_4768 O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; O-succinylhomoserine sulfhydrylase 3552650 10484471 Alide2_3412 Alicycliphilus denitrificans K601 O-succinylhomoserine sulfhydrylase YP_004389258.1 3551436 R 596154 CDS YP_004389259.1 330825956 10484472 complement(3552779..3554287) 1 NC_015422.1 TIGRFAM: Amidophosphoribosyl transferase; KEGG: dia:Dtpsy_2226 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase; amidophosphoribosyltransferase 3554287 10484472 Alide2_3413 Alicycliphilus denitrificans K601 amidophosphoribosyltransferase YP_004389259.1 3552779 R 596154 CDS YP_004389260.1 330825957 10484473 complement(3554351..3554839) 1 NC_015422.1 PFAM: Colicin V production, CvpA; Protein of unknown function DUF2474; KEGG: dia:Dtpsy_2227 colicin V production protein; colicin V production protein 3554839 10484473 Alide2_3414 Alicycliphilus denitrificans K601 colicin V production protein YP_004389260.1 3554351 R 596154 CDS YP_004389261.1 330825958 10484474 complement(3554853..3555701) 1 NC_015422.1 PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_2228 sporulation domain protein; sporulation domain-containing protein 3555701 10484474 Alide2_3415 Alicycliphilus denitrificans K601 sporulation domain-containing protein YP_004389261.1 3554853 R 596154 CDS YP_004389262.1 330825959 10484475 complement(3555711..3557063) 1 NC_015422.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: ajs:Ajs_2739 FolC bifunctional protein; PFAM: Mur ligase, central; Mur ligase, C-terminal; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 3557063 10484475 Alide2_3416 Alicycliphilus denitrificans K601 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_004389262.1 3555711 R 596154 CDS YP_004389263.1 330825960 10484476 3557082..3557468 1 NC_015422.1 KEGG: dia:Dtpsy_2230 arsenate reductase and related; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like; ArsC family protein 3557468 10484476 Alide2_3417 Alicycliphilus denitrificans K601 ArsC family protein YP_004389263.1 3557082 D 596154 CDS YP_004389264.1 330825961 10484477 3557589..3558260 1 NC_015422.1 KEGG: dia:Dtpsy_2231 17 kDa surface antigen; 17 kDa surface antigen 3558260 10484477 Alide2_3418 Alicycliphilus denitrificans K601 17 kDa surface antigen YP_004389264.1 3557589 D 596154 CDS YP_004389265.1 330825962 10484478 3558321..3558638 1 NC_015422.1 PFAM: Protein of unknown function DUF1255; KEGG: dia:Dtpsy_2232 protein of unknown function DUF1255; hypothetical protein 3558638 10484478 Alide2_3419 Alicycliphilus denitrificans K601 hypothetical protein YP_004389265.1 3558321 D 596154 CDS YP_004389266.1 330825963 10484479 3558666..3560009 1 NC_015422.1 PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: dia:Dtpsy_2233 argininosuccinate synthase; argininosuccinate synthase 3560009 10484479 Alide2_3420 Alicycliphilus denitrificans K601 argininosuccinate synthase YP_004389266.1 3558666 D 596154 CDS YP_004389267.1 330825964 10484480 complement(3560112..3562094) 1 NC_015422.1 KEGG: tmz:Tmz1t_3466 GAF modulated sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; GAF modulated sigma54 specific transcriptional regulator 3562094 10484480 Alide2_3421 Alicycliphilus denitrificans K601 GAF modulated sigma54 specific transcriptional regulator YP_004389267.1 3560112 R 596154 CDS YP_004389268.1 330825965 10484481 complement(3562280..3562786) 1 NC_015422.1 PFAM: Acetone carboxylase, gamma subunit-related; KEGG: eba:ebA4702 acetone carboxylase gamma subunit; acetone carboxylase subunit gamma 3562786 10484481 Alide2_3422 Alicycliphilus denitrificans K601 acetone carboxylase subunit gamma YP_004389268.1 3562280 R 596154 CDS YP_004389269.1 330825966 10484482 complement(3562811..3565135) 1 NC_015422.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: tmz:Tmz1t_3470 hydantoinase B/oxoprolinase; hydantoinase B/oxoprolinase 3565135 10484482 Alide2_3423 Alicycliphilus denitrificans K601 hydantoinase B/oxoprolinase YP_004389269.1 3562811 R 596154 CDS YP_004389270.1 330825967 10484483 complement(3565147..3567291) 1 NC_015422.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: reu:Reut_C6172 acetone carboxylase, beta subunit; hydantoinase/oxoprolinase 3567291 10484483 Alide2_3424 Alicycliphilus denitrificans K601 hydantoinase/oxoprolinase YP_004389270.1 3565147 R 596154 CDS YP_004389271.1 330825968 10484484 complement(3567671..3568390) 1 NC_015422.1 KEGG: dia:Dtpsy_2234 ExsB protein; TIGRFAM: Queuosine synthesis; PFAM: Queuosine synthesis; exsB protein 3568390 10484484 Alide2_3425 Alicycliphilus denitrificans K601 exsB protein YP_004389271.1 3567671 R 596154 CDS YP_004389272.1 330825969 10484485 complement(3568387..3569058) 1 NC_015422.1 KEGG: dia:Dtpsy_2235 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165; hypothetical protein 3569058 10484485 Alide2_3426 Alicycliphilus denitrificans K601 hypothetical protein YP_004389272.1 3568387 R 596154 CDS YP_004389273.1 330825970 10484486 3569222..3569596 1 NC_015422.1 PFAM: SPW repeat; KEGG: dac:Daci_4779 SPW repeat-containing protein; SPW repeat-containing protein 3569596 10484486 Alide2_3427 Alicycliphilus denitrificans K601 SPW repeat-containing protein YP_004389273.1 3569222 D 596154 CDS YP_004389274.1 330825971 10484487 complement(3569704..3570792) 1 NC_015422.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dia:Dtpsy_2239 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; UDP-N-acetylenolpyruvoylglucosamine reductase 3570792 10484487 Alide2_3428 Alicycliphilus denitrificans K601 UDP-N-acetylenolpyruvoylglucosamine reductase YP_004389274.1 3569704 R 596154 CDS YP_004389275.1 330825972 10484488 3570856..3571341 1 NC_015422.1 PFAM: Protein of unknown function DUF520; KEGG: ajs:Ajs_2750 putative nucleotide-binding protein; hypothetical protein 3571341 10484488 Alide2_3429 Alicycliphilus denitrificans K601 hypothetical protein YP_004389275.1 3570856 D 596154 CDS YP_004389276.1 330825973 10484489 3571352..3571999 1 NC_015422.1 PFAM: Peptidase A2A, retrovirus RVP subgroup; KEGG: ajs:Ajs_2751 hypothetical protein; peptidase A2A 3571999 10484489 Alide2_3430 Alicycliphilus denitrificans K601 peptidase A2A YP_004389276.1 3571352 D 596154 CDS YP_004389277.1 330825974 10484490 3572029..3573027 1 NC_015422.1 KEGG: dia:Dtpsy_2242 putative metal dependent phosphohydrolase; metal dependent phosphohydrolase 3573027 10484490 Alide2_3431 Alicycliphilus denitrificans K601 metal dependent phosphohydrolase YP_004389277.1 3572029 D 596154 CDS YP_004389278.1 330825975 10484491 complement(3573030..3573662) 1 NC_015422.1 TIGRFAM: Glycerol-3-phosphate acyltransferase, bacteria; HAMAP: Glycerol-3-phosphate acyltransferase, bacteria; KEGG: dia:Dtpsy_2243 protein of unknown function DUF205; PFAM: Glycerol-3-phosphate acyltransferase, bacteria; glycerol-3-phosphate acyltransferase 3573662 10484491 Alide2_3432 Alicycliphilus denitrificans K601 glycerol-3-phosphate acyltransferase YP_004389278.1 3573030 R 596154 CDS YP_004389279.1 330825976 10484492 complement(3573694..3574194) 1 NC_015422.1 KEGG: ajs:Ajs_2754 YbaK/EbsC protein; TIGRFAM: Prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; ybaK/ebsC protein 3574194 10484492 Alide2_3433 Alicycliphilus denitrificans K601 ybaK/ebsC protein YP_004389279.1 3573694 R 596154 CDS YP_004389280.1 330825977 10484493 complement(3574258..3575319) 1 NC_015422.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ajs:Ajs_2755 aldo/keto reductase; NADP-dependent oxidoreductase domain-containing protein 3575319 10484493 Alide2_3434 Alicycliphilus denitrificans K601 NADP-dependent oxidoreductase domain-containing protein YP_004389280.1 3574258 R 596154 CDS YP_004389281.1 330825978 10484494 complement(3575389..3576474) 1 NC_015422.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: dac:Daci_4799 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; polyamine-transporting ATPase 3576474 10484494 Alide2_3435 Alicycliphilus denitrificans K601 polyamine-transporting ATPase YP_004389281.1 3575389 R 596154 CDS YP_004389282.1 330825979 10484495 complement(3576478..3578208) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_4800 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 3578208 10484495 Alide2_3436 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389282.1 3576478 R 596154 CDS YP_004389283.1 330825980 10484496 complement(3578272..3579600) 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dac:Daci_4801 extracellular solute-binding protein; family 1 extracellular solute-binding protein 3579600 10484496 Alide2_3437 Alicycliphilus denitrificans K601 family 1 extracellular solute-binding protein YP_004389283.1 3578272 R 596154 CDS YP_004389284.1 330825981 10484497 3579720..3580652 1 NC_015422.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_2246 alpha/beta hydrolase fold protein; alpha/beta fold family hydrolase 3580652 10484497 Alide2_3438 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004389284.1 3579720 D 596154 CDS YP_004389285.1 330825982 10484498 3580775..3581779 1 NC_015422.1 TIGRFAM: Diaminopimelate dehydrogenase; KEGG: ajs:Ajs_2757 diaminopimelate dehydrogenase; PFAM: Dihydrodipicolinate reductase, N-terminal; diaminopimelate dehydrogenase 3581779 10484498 Alide2_3439 Alicycliphilus denitrificans K601 diaminopimelate dehydrogenase YP_004389285.1 3580775 D 596154 CDS YP_004389286.1 330825983 10484499 join(3581848..3581928,3581930..3582952) 1 NC_015422.1 manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein; hypothetical protein 3582952 10484499 Alide2_3440 Alicycliphilus denitrificans K601 hypothetical protein YP_004389286.1 3581848 D 596154 CDS YP_004389287.1 330825984 10484500 3582964..3585672 1 NC_015422.1 KEGG: dia:Dtpsy_2249 aminopeptidase N; TIGRFAM: Peptidase M1, alanyl aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; aminopeptidase N 3585672 10484500 Alide2_3441 Alicycliphilus denitrificans K601 aminopeptidase N YP_004389287.1 3582964 D 596154 CDS YP_004389288.1 330825985 10484501 3585693..3586700 1 NC_015422.1 KEGG: xtr:100486364 fructose-1,6-bisphosphatase class 1-like; PFAM: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase; fructose-bisphosphatase 3586700 10484501 Alide2_3442 Alicycliphilus denitrificans K601 fructose-bisphosphatase YP_004389288.1 3585693 D 596154 CDS YP_004389289.1 330825986 10484503 complement(3587149..3588114) 1 NC_015422.1 KEGG: sew:SeSA_B0128 antirestriction protein; manually curated; PFAM: Domain of unknown function DUF1738; hypothetical protein 3588114 10484503 Alide2_3443 Alicycliphilus denitrificans K601 hypothetical protein YP_004389289.1 3587149 R 596154 CDS YP_004389290.1 330825987 10484504 complement(3588126..3588401) 1 NC_015422.1 hypothetical protein 3588401 10484504 Alide2_3444 Alicycliphilus denitrificans K601 hypothetical protein YP_004389290.1 3588126 R 596154 CDS YP_004389291.1 330825988 10484505 complement(3588708..3589061) 1 NC_015422.1 KEGG: gca:Galf_1463 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 3589061 10484505 Alide2_3445 Alicycliphilus denitrificans K601 helix-turn-helix domain-containing protein YP_004389291.1 3588708 R 596154 CDS YP_004389292.1 330825989 10484506 3589380..3589580 1 NC_015422.1 hypothetical protein 3589580 10484506 Alide2_3446 Alicycliphilus denitrificans K601 hypothetical protein YP_004389292.1 3589380 D 596154 CDS YP_004389293.1 330825990 10484507 complement(3590250..3591032) 1 NC_015422.1 hypothetical protein 3591032 10484507 Alide2_3447 Alicycliphilus denitrificans K601 hypothetical protein YP_004389293.1 3590250 R 596154 CDS YP_004389294.1 330825991 10484508 3591514..3591858 1 NC_015422.1 PFAM: Terminase small subunit; KEGG: mch:Mchl_1604 terminase small subunit; terminase small subunit 3591858 10484508 Alide2_3448 Alicycliphilus denitrificans K601 terminase small subunit YP_004389294.1 3591514 D 596154 CDS YP_004389295.1 330825992 10484509 complement(3592064..3593536) 1 NC_015422.1 SMART: Primase, C-terminal 1; KEGG: aeh:Mlg_0791 ATPase-like protein; Primase 1 3593536 10484509 Alide2_3449 Alicycliphilus denitrificans K601 Primase 1 YP_004389295.1 3592064 R 596154 CDS YP_004389296.1 330825993 10484510 complement(3593537..3594088) 1 NC_015422.1 KEGG: ava:Ava_3094 virulence-associated E; virulence-associated E 3594088 10484510 Alide2_3450 Alicycliphilus denitrificans K601 virulence-associated E YP_004389296.1 3593537 R 596154 CDS YP_004389297.1 330825994 10484511 complement(3594075..3594305) 1 NC_015422.1 hypothetical protein 3594305 10484511 Alide2_3451 Alicycliphilus denitrificans K601 hypothetical protein YP_004389297.1 3594075 R 596154 CDS YP_004389298.1 330825995 10484512 complement(3594298..3594531) 1 NC_015422.1 KEGG: glo:Glov_1426 hypothetical protein; hypothetical protein 3594531 10484512 Alide2_3452 Alicycliphilus denitrificans K601 hypothetical protein YP_004389298.1 3594298 R 596154 CDS YP_004389299.1 330825996 10484513 complement(3594678..3595349) 1 NC_015422.1 hypothetical protein 3595349 10484513 Alide2_3453 Alicycliphilus denitrificans K601 hypothetical protein YP_004389299.1 3594678 R 596154 CDS YP_004389300.1 330825997 10484514 complement(3595358..3596602) 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: glo:Glov_1428 integrase family protein; integrase family protein 3596602 10484514 Alide2_3454 Alicycliphilus denitrificans K601 integrase family protein YP_004389300.1 3595358 R 596154 CDS YP_004389301.1 330825998 10484515 complement(3596919..3597695) 1 NC_015422.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: dia:Dtpsy_1238 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 3597695 10484515 Alide2_3455 Alicycliphilus denitrificans K601 tRNA/rRNA methyltransferase SpoU YP_004389301.1 3596919 R 596154 CDS YP_004389302.1 330825999 10484516 complement(3597692..3598312) 1 NC_015422.1 KEGG: dia:Dtpsy_1237 ribonuclease HII; PFAM: Ribonuclease HII/HIII; ribonuclease H 3598312 10484516 Alide2_3456 Alicycliphilus denitrificans K601 ribonuclease H YP_004389302.1 3597692 R 596154 CDS YP_004389303.1 330826000 10484517 complement(3598287..3599441) 1 NC_015422.1 KEGG: dia:Dtpsy_1236 lipid-A-disaccharide synthase; manually curated; TIGRFAM: Glycosyl transferase, family 19; PFAM: Glycosyl transferase, family 19; HAMAP: Glycosyl transferase, family 19; lipid-A-disaccharide synthase 3599441 10484517 Alide2_3457 Alicycliphilus denitrificans K601 lipid-A-disaccharide synthase YP_004389303.1 3598287 R 596154 CDS YP_004389304.1 330826001 10484518 complement(3599453..3600241) 1 NC_015422.1 PFAM: Bacterial transferase hexapeptide repeat; TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: ajs:Ajs_2573 UDP-N-acetylglucosamine acyltransferase; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase 3600241 10484518 Alide2_3458 Alicycliphilus denitrificans K601 acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase YP_004389304.1 3599453 R 596154 CDS YP_004389305.1 330826002 10484519 complement(3600267..3600707) 1 NC_015422.1 KEGG: aav:Aave_1834 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; 3-hydroxyacyl-ACP dehydratase 3600707 10484519 Alide2_3459 Alicycliphilus denitrificans K601 3-hydroxyacyl-ACP dehydratase YP_004389305.1 3600267 R 596154 CDS YP_004389306.1 330826003 10484520 complement(3600704..3601702) 1 NC_015422.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: dia:Dtpsy_1233 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 3601702 10484520 Alide2_3460 Alicycliphilus denitrificans K601 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_004389306.1 3600704 R 596154 CDS YP_004389307.1 330826004 10484521 complement(3601731..3602255) 1 NC_015422.1 KEGG: ajs:Ajs_2576 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH); outer membrane chaperone 3602255 10484521 Alide2_3461 Alicycliphilus denitrificans K601 outer membrane chaperone YP_004389307.1 3601731 R 596154 CDS YP_004389308.1 330826005 10484522 complement(3602255..3604552) 1 NC_015422.1 KEGG: dia:Dtpsy_1231 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; outer membrane protein assembly complex, YaeT protein 3604552 10484522 Alide2_3462 Alicycliphilus denitrificans K601 outer membrane protein assembly complex, YaeT protein YP_004389308.1 3602255 R 596154 CDS YP_004389309.1 330826006 10484523 complement(3604598..3605959) 1 NC_015422.1 TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: ajs:Ajs_2578 peptidase RseP; SMART: PDZ/DHR/GLGF; membrane-associated zinc metalloprotease 3605959 10484523 Alide2_3463 Alicycliphilus denitrificans K601 membrane-associated zinc metalloprotease YP_004389309.1 3604598 R 596154 CDS YP_004389310.1 330826007 10484524 complement(3606062..3607237) 1 NC_015422.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: dia:Dtpsy_1229 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3607237 10484524 Alide2_3464 Alicycliphilus denitrificans K601 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004389310.1 3606062 R 596154 CDS YP_004389311.1 330826008 10484525 complement(3607241..3608086) 1 NC_015422.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: dia:Dtpsy_1228 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3608086 10484525 Alide2_3465 Alicycliphilus denitrificans K601 phosphatidate cytidylyltransferase YP_004389311.1 3607241 R 596154 CDS YP_004389312.1 330826009 10484526 complement(3608125..3608862) 1 NC_015422.1 TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: dia:Dtpsy_1227 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; UDP diphosphate synthase 3608862 10484526 Alide2_3466 Alicycliphilus denitrificans K601 UDP diphosphate synthase YP_004389312.1 3608125 R 596154 CDS YP_004389313.1 330826010 10484527 complement(3608874..3609434) 1 NC_015422.1 KEGG: dia:Dtpsy_1226 ribosome recycling factor; TIGRFAM: Ribosome recycling factor; PFAM: Ribosome recycling factor; ribosome recycling factor 3609434 10484527 Alide2_3467 Alicycliphilus denitrificans K601 ribosome recycling factor YP_004389313.1 3608874 R 596154 CDS YP_004389314.1 330826011 10484528 complement(3609484..3610206) 1 NC_015422.1 KEGG: dia:Dtpsy_1225 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase; uridylate kinase 3610206 10484528 Alide2_3468 Alicycliphilus denitrificans K601 uridylate kinase YP_004389314.1 3609484 R 596154 CDS YP_004389315.1 330826012 10484529 complement(3610260..3611156) 1 NC_015422.1 KEGG: dia:Dtpsy_1224 elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; translation elongation factor Ts 3611156 10484529 Alide2_3469 Alicycliphilus denitrificans K601 translation elongation factor Ts YP_004389315.1 3610260 R 596154 CDS YP_004389316.1 330826013 10484530 complement(3611271..3612023) 1 NC_015422.1 KEGG: ajs:Ajs_2585 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; 30S ribosomal protein S2 3612023 10484530 Alide2_3470 Alicycliphilus denitrificans K601 30S ribosomal protein S2 YP_004389316.1 3611271 R 596154 CDS YP_004389317.1 330826014 10484531 3612242..3613588 1 NC_015422.1 PFAM: Amidase; KEGG: ajs:Ajs_2586 amidase; amidase 3613588 10484531 Alide2_3471 Alicycliphilus denitrificans K601 amidase YP_004389317.1 3612242 D 596154 CDS YP_004389318.1 330826015 10484532 3613643..3614884 1 NC_015422.1 KEGG: ajs:Ajs_2587 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase 3614884 10484532 Alide2_3472 Alicycliphilus denitrificans K601 D-amino-acid dehydrogenase YP_004389318.1 3613643 D 596154 CDS YP_004389319.1 330826016 10484534 3616467..3617300 1 NC_015422.1 KEGG: vap:Vapar_0122 hypothetical protein; hypothetical protein 3617300 10484534 Alide2_3474 Alicycliphilus denitrificans K601 hypothetical protein YP_004389319.1 3616467 D 596154 CDS YP_004389320.1 330826017 10484535 complement(3617282..3617965) 1 NC_015422.1 KEGG: dia:Dtpsy_1218 hypothetical protein; hypothetical protein 3617965 10484535 Alide2_3475 Alicycliphilus denitrificans K601 hypothetical protein YP_004389320.1 3617282 R 596154 CDS YP_004389321.1 330826018 10484536 complement(3618129..3619112) 1 NC_015422.1 KEGG: dia:Dtpsy_1217 mammalian cell entry related domain protein; mammalian cell entry related domain-containing protein 3619112 10484536 Alide2_3476 Alicycliphilus denitrificans K601 mammalian cell entry related domain-containing protein YP_004389321.1 3618129 R 596154 CDS YP_004389322.1 330826019 10484537 complement(3619134..3619970) 1 NC_015422.1 PFAM: Domain of unknown function DUF140; KEGG: dia:Dtpsy_1216 protein of unknown function DUF140; hypothetical protein 3619970 10484537 Alide2_3477 Alicycliphilus denitrificans K601 hypothetical protein YP_004389322.1 3619134 R 596154 CDS YP_004389323.1 330826020 10484538 complement(3620050..3620508) 1 NC_015422.1 KEGG: dia:Dtpsy_1215 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 3620508 10484538 Alide2_3478 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004389323.1 3620050 R 596154 CDS YP_004389324.1 330826021 10484539 3620549..3622564 1 NC_015422.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2594 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 3622564 10484539 Alide2_3479 Alicycliphilus denitrificans K601 heavy metal translocating P-type ATPase YP_004389324.1 3620549 D 596154 CDS YP_004389325.1 330826022 10484540 3622711..3623337 1 NC_015422.1 KEGG: dia:Dtpsy_1212 protein of unknown function DUF161; manually curated; PFAM: Protein of unknown function DUF161; hypothetical protein 3623337 10484540 Alide2_3480 Alicycliphilus denitrificans K601 hypothetical protein YP_004389325.1 3622711 D 596154 CDS YP_004389326.1 330826023 10484541 3623355..3623702 1 NC_015422.1 KEGG: dia:Dtpsy_1211 hypothetical protein; hypothetical protein 3623702 10484541 Alide2_3481 Alicycliphilus denitrificans K601 hypothetical protein YP_004389326.1 3623355 D 596154 CDS YP_004389327.1 330826024 10484542 3623803..3624288 1 NC_015422.1 PFAM: Blue (type 1) copper domain; KEGG: ajs:Ajs_2601 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein 3624288 10484542 Alide2_3482 Alicycliphilus denitrificans K601 blue (type 1) copper domain-containing protein YP_004389327.1 3623803 D 596154 CDS YP_004389328.1 330826025 10484543 3624315..3624794 1 NC_015422.1 PFAM: Protein of unknown function DUF411; KEGG: dia:Dtpsy_1206 protein of unknown function DUF411; hypothetical protein 3624794 10484543 Alide2_3483 Alicycliphilus denitrificans K601 hypothetical protein YP_004389328.1 3624315 D 596154 CDS YP_004389329.1 330826026 10484544 3624833..3625846 1 NC_015422.1 PFAM: Peptidase S58, DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA; peptidase S58 DmpA 3625846 10484544 Alide2_3484 Alicycliphilus denitrificans K601 peptidase S58 DmpA YP_004389329.1 3624833 D 596154 CDS YP_004389330.1 330826027 10484545 3625853..3627184 1 NC_015422.1 KEGG: ajs:Ajs_2606 TRAP transporter solute receptor TAXI family protein; TRAP transporter solute receptor TAXI family protein 3627184 10484545 Alide2_3485 Alicycliphilus denitrificans K601 TRAP transporter solute receptor TAXI family protein YP_004389330.1 3625853 D 596154 CDS YP_004389331.1 330826028 10484546 complement(3627188..3628849) 1 NC_015422.1 TIGRFAM: ABC transporter ATP-binding protein, ChvD; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1200 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; ChvD family ATP-binding protein 3628849 10484546 Alide2_3486 Alicycliphilus denitrificans K601 ChvD family ATP-binding protein YP_004389331.1 3627188 R 596154 CDS YP_004389332.1 330826029 10484547 3629107..3630813 1 NC_015422.1 KEGG: ajs:Ajs_2609 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase 3630813 10484547 Alide2_3487 Alicycliphilus denitrificans K601 DEAD/DEAH box helicase YP_004389332.1 3629107 D 596154 CDS YP_004389333.1 330826030 10484548 3630914..3632764 1 NC_015422.1 KEGG: ajs:Ajs_2610 peptidase M14, carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A 3632764 10484548 Alide2_3488 Alicycliphilus denitrificans K601 peptidase M14 carboxypeptidase A YP_004389333.1 3630914 D 596154 CDS YP_004389334.1 330826031 10484550 3633028..3633630 1 NC_015422.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein 3633630 10484550 Alide2_3489 Alicycliphilus denitrificans K601 PEP motif putative anchor domain-containing protein YP_004389334.1 3633028 D 596154 CDS YP_004389335.1 330826032 10484551 3633786..3634082 1 NC_015422.1 KEGG: ajs:Ajs_2619 hypothetical protein; hypothetical protein 3634082 10484551 Alide2_3490 Alicycliphilus denitrificans K601 hypothetical protein YP_004389335.1 3633786 D 596154 CDS YP_004389336.1 330826033 10484552 complement(3634100..3634213) 1 NC_015422.1 hypothetical protein 3634213 10484552 Alide2_3491 Alicycliphilus denitrificans K601 hypothetical protein YP_004389336.1 3634100 R 596154 CDS YP_004389337.1 330826034 10484553 complement(3634246..3634473) 1 NC_015422.1 KEGG: dia:Dtpsy_2403 hypothetical protein; hypothetical protein 3634473 10484553 Alide2_3492 Alicycliphilus denitrificans K601 hypothetical protein YP_004389337.1 3634246 R 596154 CDS YP_004389338.1 330826035 10484555 3635053..3635445 1 NC_015422.1 PFAM: LrgB-like protein; KEGG: dia:Dtpsy_2405 LrgB family protein; LrgB family protein 3635445 10484555 Alide2_3494 Alicycliphilus denitrificans K601 LrgB family protein YP_004389338.1 3635053 D 596154 CDS YP_004389339.1 330826036 10484556 complement(3635440..3636390) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_2978 LysR family transcriptional regulator; LysR family transcriptional regulator 3636390 10484556 Alide2_3495 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389339.1 3635440 R 596154 CDS YP_004389340.1 330826037 10484557 3636562..3637758 1 NC_015422.1 KEGG: dia:Dtpsy_2407 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; glutaryl-CoA dehydrogenase 3637758 10484557 Alide2_3496 Alicycliphilus denitrificans K601 glutaryl-CoA dehydrogenase YP_004389340.1 3636562 D 596154 CDS YP_004389341.1 330826038 10484558 3637818..3639059 1 NC_015422.1 KEGG: dia:Dtpsy_2408 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 3639059 10484558 Alide2_3497 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004389341.1 3637818 D 596154 CDS YP_004389342.1 330826039 10484559 3639128..3640096 1 NC_015422.1 KEGG: ajs:Ajs_2981 hypothetical protein; hypothetical protein 3640096 10484559 Alide2_3498 Alicycliphilus denitrificans K601 hypothetical protein YP_004389342.1 3639128 D 596154 CDS YP_004389343.1 330826040 10484560 3640299..3640823 1 NC_015422.1 KEGG: dia:Dtpsy_2411 hypothetical protein; hypothetical protein 3640823 10484560 Alide2_3499 Alicycliphilus denitrificans K601 hypothetical protein YP_004389343.1 3640299 D 596154 CDS YP_004389344.1 330826041 10484561 3640858..3641490 1 NC_015422.1 KEGG: dia:Dtpsy_2412 hypothetical protein; hypothetical protein 3641490 10484561 Alide2_3500 Alicycliphilus denitrificans K601 hypothetical protein YP_004389344.1 3640858 D 596154 CDS YP_004389345.1 330826042 10484562 complement(3641478..3642419) 1 NC_015422.1 PFAM: Regulator of K+ conductance, N-terminal; KEGG: ajs:Ajs_2986 NAD-dependent epimerase/dehydratase; TrkA-N domain-containing protein 3642419 10484562 Alide2_3501 Alicycliphilus denitrificans K601 TrkA-N domain-containing protein YP_004389345.1 3641478 R 596154 CDS YP_004389346.1 330826043 10484563 3642488..3643549 1 NC_015422.1 KEGG: dia:Dtpsy_2414 CDP-6-deoxy-delta-3,4-glucoseen reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin; ferredoxin--NAD(+) reductase 3643549 10484563 Alide2_3502 Alicycliphilus denitrificans K601 ferredoxin--NAD(+) reductase YP_004389346.1 3642488 D 596154 CDS YP_004389347.1 330826044 10484564 complement(3643556..3644704) 1 NC_015422.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; KEGG: hch:HCH_06702 cysteine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 3644704 10484564 Alide2_3503 Alicycliphilus denitrificans K601 pyridoxal-5'-phosphate-dependent protein subunit beta YP_004389347.1 3643556 R 596154 CDS YP_004389348.1 330826045 10484565 3644821..3645738 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_B5443 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 3645738 10484565 Alide2_3504 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389348.1 3644821 D 596154 CDS YP_004389349.1 330826046 10484566 3645949..3646959 1 NC_015422.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase; uroporphyrinogen decarboxylase 3646959 10484566 Alide2_3505 Alicycliphilus denitrificans K601 uroporphyrinogen decarboxylase YP_004389349.1 3645949 D 596154 CDS YP_004389350.1 330826047 10484567 3647012..3647995 1 NC_015422.1 KEGG: reu:Reut_B5440 hypothetical protein; hypothetical protein 3647995 10484567 Alide2_3506 Alicycliphilus denitrificans K601 hypothetical protein YP_004389350.1 3647012 D 596154 CDS YP_004389351.1 330826048 10484568 3648045..3649016 1 NC_015422.1 KEGG: ajs:Ajs_2989 hypothetical protein; hypothetical protein 3649016 10484568 Alide2_3507 Alicycliphilus denitrificans K601 hypothetical protein YP_004389351.1 3648045 D 596154 CDS YP_004389352.1 330826049 10484569 complement(3649062..3649928) 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0249/HpnK; KEGG: vap:Vapar_5574 YdjC family protein; hypothetical protein 3649928 10484569 Alide2_3508 Alicycliphilus denitrificans K601 hypothetical protein YP_004389352.1 3649062 R 596154 CDS YP_004389353.1 330826050 10484570 3649947..3650357 1 NC_015422.1 PFAM: GtrA-like protein; KEGG: axy:AXYL_00714 GtrA-like protein; GtrA family protein 3650357 10484570 Alide2_3509 Alicycliphilus denitrificans K601 GtrA family protein YP_004389353.1 3649947 D 596154 CDS YP_004389354.1 330826051 10484571 complement(3650305..3651882) 1 NC_015422.1 PFAM: Glycosyl transferase, family 39; KEGG: dac:Daci_2190 glycosyl transferase family protein; glycosyl transferase family protein 3651882 10484571 Alide2_3510 Alicycliphilus denitrificans K601 glycosyl transferase family protein YP_004389354.1 3650305 R 596154 CDS YP_004389355.1 330826052 10484572 complement(3651879..3652859) 1 NC_015422.1 PFAM: Glycosyl transferase, family 2; KEGG: vap:Vapar_5572 glycosyl transferase family 2; family 2 glycosyl transferase 3652859 10484572 Alide2_3511 Alicycliphilus denitrificans K601 family 2 glycosyl transferase YP_004389355.1 3651879 R 596154 CDS YP_004389356.1 330826053 10484573 complement(3653055..3653573) 1 NC_015422.1 TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: ajs:Ajs_2990 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3653573 10484573 Alide2_3512 Alicycliphilus denitrificans K601 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_004389356.1 3653055 R 596154 CDS YP_004389357.1 330826054 10484574 complement(3653570..3655138) 1 NC_015422.1 TIGRFAM: Poly(A) polymerase, PcnB; KEGG: dia:Dtpsy_2418 poly(A) polymerase; PFAM: Poly A polymerase, head domain; poly(A) polymerase 3655138 10484574 Alide2_3513 Alicycliphilus denitrificans K601 poly(A) polymerase YP_004389357.1 3653570 R 596154 CDS YP_004389358.1 330826055 10484575 complement(3655135..3655809) 1 NC_015422.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: dia:Dtpsy_2419 HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase 3655809 10484575 Alide2_3514 Alicycliphilus denitrificans K601 HAD-superfamily hydrolase YP_004389358.1 3655135 R 596154 CDS YP_004389359.1 330826056 10484576 complement(3655806..3656513) 1 NC_015422.1 KEGG: aav:Aave_1971 chromosomal replication initiator, DnaA; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); DnaA regulatory inactivator Hda 3656513 10484576 Alide2_3515 Alicycliphilus denitrificans K601 DnaA regulatory inactivator Hda YP_004389359.1 3655806 R 596154 CDS YP_004389360.1 330826057 10484577 3656836..3658788 1 NC_015422.1 TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: aci:ACIAD0929 gamma-glutamyltranspeptidase precursor; PFAM: Gamma-glutamyltranspeptidase; gamma-glutamyltransferase 3658788 10484577 Alide2_3516 Alicycliphilus denitrificans K601 gamma-glutamyltransferase YP_004389360.1 3656836 D 596154 CDS YP_004389361.1 330826058 10484578 3658945..3659985 1 NC_015422.1 TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: ajs:Ajs_2994 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; phosphoribosylformylglycinamidine cyclo-ligase 3659985 10484578 Alide2_3517 Alicycliphilus denitrificans K601 phosphoribosylformylglycinamidine cyclo-ligase YP_004389361.1 3658945 D 596154 CDS YP_004389362.1 330826059 10484579 3660010..3661095 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0118; KEGG: dia:Dtpsy_2422 hypothetical protein; hypothetical protein 3661095 10484579 Alide2_3518 Alicycliphilus denitrificans K601 hypothetical protein YP_004389362.1 3660010 D 596154 CDS YP_004389363.1 330826060 10484580 3661327..3661722 1 NC_015422.1 PFAM: UspA; KEGG: dia:Dtpsy_2423 UspA domain protein; UspA domain-containing protein 3661722 10484580 Alide2_3519 Alicycliphilus denitrificans K601 UspA domain-containing protein YP_004389363.1 3661327 D 596154 CDS YP_004389364.1 330826061 10484581 complement(3661724..3662572) 1 NC_015422.1 KEGG: ajs:Ajs_2998 hypothetical protein; hypothetical protein 3662572 10484581 Alide2_3520 Alicycliphilus denitrificans K601 hypothetical protein YP_004389364.1 3661724 R 596154 CDS YP_004389365.1 330826062 10484582 complement(3662589..3664154) 1 NC_015422.1 KEGG: ajs:Ajs_2999 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN; integral membrane protein MviN 3664154 10484582 Alide2_3521 Alicycliphilus denitrificans K601 integral membrane protein MviN YP_004389365.1 3662589 R 596154 CDS YP_004389366.1 330826063 10484583 3664259..3664558 1 NC_015422.1 KEGG: dia:Dtpsy_2427 30S ribosomal protein S20; TIGRFAM: Ribosomal protein S20; PFAM: Ribosomal protein S20; 30S ribosomal protein S20 3664558 10484583 Alide2_3522 Alicycliphilus denitrificans K601 30S ribosomal protein S20 YP_004389366.1 3664259 D 596154 CDS YP_004389367.1 330826064 10484584 complement(3664773..3665453) 1 NC_015422.1 KEGG: vha:VIBHAR_05618 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF45; hypothetical protein 3665453 10484584 Alide2_3523 Alicycliphilus denitrificans K601 hypothetical protein YP_004389367.1 3664773 R 596154 CDS YP_004389368.1 330826065 10484585 complement(3665474..3665746) 1 NC_015422.1 hypothetical protein 3665746 10484585 Alide2_3524 Alicycliphilus denitrificans K601 hypothetical protein YP_004389368.1 3665474 R 596154 CDS YP_004389369.1 330826066 10484586 complement(3665756..3667270) 1 NC_015422.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66 3667270 10484586 Alide2_3525 Alicycliphilus denitrificans K601 transposase IS66 YP_004389369.1 3665756 R 596154 CDS YP_004389370.1 330826067 10484587 complement(3667353..3667685) 1 NC_015422.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 3667685 10484587 Alide2_3526 Alicycliphilus denitrificans K601 IS66 Orf2 family protein YP_004389370.1 3667353 R 596154 CDS YP_004389371.1 330826068 10484588 complement(3667682..3668110) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein 3668110 10484588 Alide2_3527 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389371.1 3667682 R 596154 CDS YP_004389372.1 330826069 10484589 complement(3668325..3669239) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 3669239 10484589 Alide2_3528 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004389372.1 3668325 R 596154 CDS YP_004389373.1 330826070 10484590 complement(3669236..3669559) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 3669559 10484590 Alide2_3529 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389373.1 3669236 R 596154 CDS YP_004389374.1 330826071 10484592 complement(3669924..3670997) 1 NC_015422.1 manually curated; KEGG: pol:Bpro_4383 putative porin precursor transmembrane protein; porin transmembrane protein 3670997 10484592 Alide2_3531 Alicycliphilus denitrificans K601 porin transmembrane protein YP_004389374.1 3669924 R 596154 CDS YP_004389375.1 330826072 10484593 complement(3672034..3672837) 1 NC_015422.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 3672837 10484593 Alide2_3532 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004389375.1 3672034 R 596154 CDS YP_004389376.1 330826073 10484594 complement(3672827..3674353) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit 3674353 10484594 Alide2_3533 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004389376.1 3672827 R 596154 CDS YP_004389377.1 330826074 10484595 complement(3674491..3674811) 1 NC_015422.1 hypothetical protein 3674811 10484595 Alide2_3534 Alicycliphilus denitrificans K601 hypothetical protein YP_004389377.1 3674491 R 596154 CDS YP_004389378.1 330826075 10484596 complement(3674802..3675344) 1 NC_015422.1 hypothetical protein 3675344 10484596 Alide2_3535 Alicycliphilus denitrificans K601 hypothetical protein YP_004389378.1 3674802 R 596154 CDS YP_004389379.1 330826076 10484597 complement(3675319..3675807) 1 NC_015422.1 hypothetical protein 3675807 10484597 Alide2_3536 Alicycliphilus denitrificans K601 hypothetical protein YP_004389379.1 3675319 R 596154 CDS YP_004389380.1 330826077 10484598 3676078..3676518 1 NC_015422.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: vap:Vapar_5710 hypothetical protein; dimethylmenaquinone methyltransferase 3676518 10484598 Alide2_3537 Alicycliphilus denitrificans K601 dimethylmenaquinone methyltransferase YP_004389380.1 3676078 D 596154 CDS YP_004389381.1 330826078 10484599 complement(3676562..3676876) 1 NC_015422.1 PFAM: Protein of unknown function DUF3579; KEGG: dia:Dtpsy_2428 hypothetical protein; hypothetical protein 3676876 10484599 Alide2_3538 Alicycliphilus denitrificans K601 hypothetical protein YP_004389381.1 3676562 R 596154 CDS YP_004389382.1 330826079 10484600 3677114..3678310 1 NC_015422.1 TIGRFAM: Acetylornithine/succinylornithine aminotransferase; KEGG: dia:Dtpsy_2429 acetylornithine aminotransferase; PFAM: Aminotransferase class-III; acetylornithine and succinylornithine aminotransferase 3678310 10484600 Alide2_3539 Alicycliphilus denitrificans K601 acetylornithine and succinylornithine aminotransferase YP_004389382.1 3677114 D 596154 CDS YP_004389383.1 330826080 10484601 3678327..3679247 1 NC_015422.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: dia:Dtpsy_2430 ornithine carbamoyltransferase; ornithine carbamoyltransferase 3679247 10484601 Alide2_3540 Alicycliphilus denitrificans K601 ornithine carbamoyltransferase YP_004389383.1 3678327 D 596154 CDS YP_004389384.1 330826081 10484602 complement(3679260..3679793) 1 NC_015422.1 KEGG: bmj:BMULJ_04805 hypothetical protein; hypothetical protein 3679793 10484602 Alide2_3541 Alicycliphilus denitrificans K601 hypothetical protein YP_004389384.1 3679260 R 596154 CDS YP_004389385.1 330826082 10484603 complement(3679800..3680009) 1 NC_015422.1 PFAM: Protein of unknown function DUF2945; KEGG: pde:Pden_4005 hypothetical protein; hypothetical protein 3680009 10484603 Alide2_3542 Alicycliphilus denitrificans K601 hypothetical protein YP_004389385.1 3679800 R 596154 CDS YP_004389386.1 330826083 10484604 3680109..3680456 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0153; KEGG: ajs:Ajs_3004 hypothetical protein; hypothetical protein 3680456 10484604 Alide2_3543 Alicycliphilus denitrificans K601 hypothetical protein YP_004389386.1 3680109 D 596154 CDS YP_004389387.1 330826084 10484605 complement(3680516..3680761) 1 NC_015422.1 KEGG: dac:Daci_2177 hypothetical protein; hypothetical protein 3680761 10484605 Alide2_3544 Alicycliphilus denitrificans K601 hypothetical protein YP_004389387.1 3680516 R 596154 CDS YP_004389388.1 330826085 10484606 complement(3680763..3682703) 1 NC_015422.1 KEGG: dia:Dtpsy_2434 ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; ferrous iron transport protein B 3682703 10484606 Alide2_3545 Alicycliphilus denitrificans K601 ferrous iron transport protein B YP_004389388.1 3680763 R 596154 CDS YP_004389389.1 330826086 10484607 complement(3682700..3682999) 1 NC_015422.1 KEGG: dia:Dtpsy_2435 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit; FeoA family protein 3682999 10484607 Alide2_3546 Alicycliphilus denitrificans K601 FeoA family protein YP_004389389.1 3682700 R 596154 CDS YP_004389390.1 330826087 10484608 3683119..3683442 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_2436 protein of unknown function UPF0153; hypothetical protein 3683442 10484608 Alide2_3547 Alicycliphilus denitrificans K601 hypothetical protein YP_004389390.1 3683119 D 596154 CDS YP_004389391.1 330826088 10484609 3683444..3684091 1 NC_015422.1 TIGRFAM: Arylformamidase; KEGG: dia:Dtpsy_2438 arylformamidase; PFAM: Putative cyclase; arylformamidase 3684091 10484609 Alide2_3548 Alicycliphilus denitrificans K601 arylformamidase YP_004389391.1 3683444 D 596154 CDS YP_004389392.1 330826089 10484610 3684274..3685272 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: axy:AXYL_03752 LysR family regulatory helix-turn-helix protein 123; LysR family transcriptional regulator 3685272 10484610 Alide2_3549 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389392.1 3684274 D 596154 CDS YP_004389393.1 330826090 10484611 3685269..3686243 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1563 ABC transporter, permease protein; ABC transporter permease 3686243 10484611 Alide2_3550 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389393.1 3685269 D 596154 CDS YP_004389394.1 330826091 10484612 3686240..3687139 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: axy:AXYL_03755 binding-protein-dependent transport system inner membrane component family protein 46; ABC transporter permease 3687139 10484612 Alide2_3551 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389394.1 3686240 D 596154 CDS YP_004389395.1 330826092 10484613 3687136..3688110 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: rpf:Rpic12D_1762 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; peptide ABC transporter ATPase 3688110 10484613 Alide2_3552 Alicycliphilus denitrificans K601 peptide ABC transporter ATPase YP_004389395.1 3687136 D 596154 CDS YP_004389396.1 330826093 10484614 3688107..3689102 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: axy:AXYL_03757 oligopeptide/dipeptide abc transporter, ATP-binding protein, C-terminal domain-containing protein 6; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; peptide ABC transporter ATPase 3689102 10484614 Alide2_3553 Alicycliphilus denitrificans K601 peptide ABC transporter ATPase YP_004389396.1 3688107 D 596154 CDS YP_004389397.1 330826094 10484615 3689226..3690794 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: bav:BAV1559 ABC transporter, substrate binding protein; ABC transporter substrate-binding protein 3690794 10484615 Alide2_3554 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004389397.1 3689226 D 596154 CDS YP_004389398.1 330826095 10484616 3690794..3692101 1 NC_015422.1 KEGG: axy:AXYL_03759 BAAT/acyl-CoA thioester hydrolase family protein 1; PFAM: BAAT/Acyl-CoA thioester hydrolase C-terminal; Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; Palmitoyl-CoA hydrolase 3692101 10484616 Alide2_3555 Alicycliphilus denitrificans K601 Palmitoyl-CoA hydrolase YP_004389398.1 3690794 D 596154 CDS YP_004389399.1 330826096 10484617 complement(3692107..3693159) 1 NC_015422.1 PFAM: Adenosine/AMP deaminase; TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: dia:Dtpsy_2442 adenosine deaminase; adenosine deaminase 3693159 10484617 Alide2_3556 Alicycliphilus denitrificans K601 adenosine deaminase YP_004389399.1 3692107 R 596154 CDS YP_004389400.1 330826097 10484618 complement(3693252..3693605) 1 NC_015422.1 PFAM: Domain of unknown function DUF861, cupin-3; KEGG: axy:AXYL_05003 hypothetical protein; hypothetical protein 3693605 10484618 Alide2_3557 Alicycliphilus denitrificans K601 hypothetical protein YP_004389400.1 3693252 R 596154 CDS YP_004389401.1 330826098 10484619 complement(3693644..3694438) 1 NC_015422.1 KEGG: rso:RSc3411 transcription regulator protein; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 3694438 10484619 Alide2_3558 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004389401.1 3693644 R 596154 CDS YP_004389402.1 330826099 10484620 3694642..3695412 1 NC_015422.1 KEGG: rsl:RPSI07_0031 putative amino acid-binding periplasmic (Pbp) ABC transporter protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 3695412 10484620 Alide2_3559 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004389402.1 3694642 D 596154 CDS YP_004389403.1 330826100 10484621 3695439..3696104 1 NC_015422.1 KEGG: rso:RSc3409 amino-acid transmembrane ABC transporter protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease 3696104 10484621 Alide2_3560 Alicycliphilus denitrificans K601 polar amino acid ABC transporter permease YP_004389403.1 3695439 D 596154 CDS YP_004389404.1 330826101 10484622 3696101..3696847 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: rso:RSc3408 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 3696847 10484622 Alide2_3561 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004389404.1 3696101 D 596154 CDS YP_004389405.1 330826102 10484623 3696844..3698142 1 NC_015422.1 PFAM: FAD dependent oxidoreductase; KEGG: xtr:100491525 hypothetical protein LOC100491525; FAD dependent oxidoreductase 3698142 10484623 Alide2_3562 Alicycliphilus denitrificans K601 FAD dependent oxidoreductase YP_004389405.1 3696844 D 596154 CDS YP_004389406.1 330826103 10484624 complement(3698193..3699359) 1 NC_015422.1 PFAM: Basic membrane lipoprotein; KEGG: dia:Dtpsy_2443 basic membrane lipoprotein; basic membrane lipoprotein 3699359 10484624 Alide2_3563 Alicycliphilus denitrificans K601 basic membrane lipoprotein YP_004389406.1 3698193 R 596154 CDS YP_004389407.1 330826104 10484625 complement(3699400..3700545) 1 NC_015422.1 PFAM: Basic membrane lipoprotein; KEGG: dia:Dtpsy_2444 basic membrane lipoprotein; basic membrane lipoprotein 3700545 10484625 Alide2_3564 Alicycliphilus denitrificans K601 basic membrane lipoprotein YP_004389407.1 3699400 R 596154 CDS YP_004389408.1 330826105 10484626 complement(3700568..3701488) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2445 inner-membrane translocator; ABC transporter permease 3701488 10484626 Alide2_3565 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389408.1 3700568 R 596154 CDS YP_004389409.1 330826106 10484627 complement(3701488..3702561) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2446 inner-membrane translocator; ABC transporter permease 3702561 10484627 Alide2_3566 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389409.1 3701488 R 596154 CDS YP_004389410.1 330826107 10484628 complement(3702548..3704137) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2447 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 3704137 10484628 Alide2_3567 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004389410.1 3702548 R 596154 CDS YP_004389411.1 330826108 10484629 3704656..3705786 1 NC_015422.1 KEGG: pol:Bpro_2745 putative transposase; transposase 3705786 10484629 Alide2_3569 Alicycliphilus denitrificans K601 transposase YP_004389411.1 3704656 D 596154 CDS YP_004389412.1 330826109 10484630 3705752..3706045 1 NC_015422.1 KEGG: pol:Bpro_2744 hypothetical protein; hypothetical protein 3706045 10484630 Alide2_3570 Alicycliphilus denitrificans K601 hypothetical protein YP_004389412.1 3705752 D 596154 CDS YP_004389413.1 330826110 10484631 complement(3708138..3708761) 1 NC_015422.1 KEGG: dia:Dtpsy_2451 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Crp/Fnr family transcriptional regulator 3708761 10484631 Alide2_3571 Alicycliphilus denitrificans K601 Crp/Fnr family transcriptional regulator YP_004389413.1 3708138 R 596154 CDS YP_004389414.1 330826111 10484632 3708973..3710031 1 NC_015422.1 PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type; porin 3710031 10484632 Alide2_3572 Alicycliphilus denitrificans K601 porin YP_004389414.1 3708973 D 596154 CDS YP_004389415.1 330826112 10484633 3710141..3710578 1 NC_015422.1 PFAM: Histidine triad (HIT) protein; KEGG: dia:Dtpsy_2454 histidine triad (HIT) protein; histidine triad (HIT) protein 3710578 10484633 Alide2_3573 Alicycliphilus denitrificans K601 histidine triad (HIT) protein YP_004389415.1 3710141 D 596154 CDS YP_004389416.1 330826113 10484634 complement(3710575..3711522) 1 NC_015422.1 KEGG: dia:Dtpsy_2455 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; glyoxylate reductase 3711522 10484634 Alide2_3574 Alicycliphilus denitrificans K601 glyoxylate reductase YP_004389416.1 3710575 R 596154 CDS YP_004389417.1 330826114 10484635 3711704..3712630 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_3110 Bcr/CflA subfamily drug resistance transporter; major facilitator superfamily protein 3712630 10484635 Alide2_3575 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004389417.1 3711704 D 596154 CDS YP_004389418.1 330826115 10484636 3712620..3713582 1 NC_015422.1 PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dia:Dtpsy_2457 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA dimethylallyltransferase 3713582 10484636 Alide2_3576 Alicycliphilus denitrificans K601 tRNA dimethylallyltransferase YP_004389418.1 3712620 D 596154 CDS YP_004389419.1 330826116 10484637 3713588..3714250 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2458 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 3714250 10484637 Alide2_3577 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004389419.1 3713588 D 596154 CDS YP_004389420.1 330826117 10484638 complement(3714258..3714686) 1 NC_015422.1 PFAM: Heat shock protein Hsp20; KEGG: dia:Dtpsy_2459 heat shock protein HSP20; heat shock protein Hsp20 3714686 10484638 Alide2_3578 Alicycliphilus denitrificans K601 heat shock protein Hsp20 YP_004389420.1 3714258 R 596154 CDS YP_004389421.1 330826118 10484639 3714819..3717458 1 NC_015422.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2460 protein of unknown function DUF214; hypothetical protein 3717458 10484639 Alide2_3579 Alicycliphilus denitrificans K601 hypothetical protein YP_004389421.1 3714819 D 596154 CDS YP_004389422.1 330826119 10484640 3717477..3718547 1 NC_015422.1 KEGG: ajs:Ajs_3115 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; cysteine synthase 3718547 10484640 Alide2_3580 Alicycliphilus denitrificans K601 cysteine synthase YP_004389422.1 3717477 D 596154 CDS YP_004389423.1 330826120 10484641 3718544..3719638 1 NC_015422.1 KEGG: ajs:Ajs_3116 secreted hydrolase-like protein; hypothetical protein 3719638 10484641 Alide2_3581 Alicycliphilus denitrificans K601 hypothetical protein YP_004389423.1 3718544 D 596154 CDS YP_004389424.1 330826121 10484642 complement(3719696..3720697) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2463 inner-membrane translocator; ABC transporter permease 3720697 10484642 Alide2_3582 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389424.1 3719696 R 596154 CDS YP_004389425.1 330826122 10484643 complement(3720716..3721600) 1 NC_015422.1 KEGG: dia:Dtpsy_2464 inner-membrane translocator; manually curated; PFAM: ABC transporter permease; ABC transporter permease 3721600 10484643 Alide2_3583 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389425.1 3720716 R 596154 CDS YP_004389426.1 330826123 10484644 complement(3721647..3722846) 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3119 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3722846 10484644 Alide2_3584 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004389426.1 3721647 R 596154 CDS YP_004389427.1 330826124 10484645 complement(3722918..3724120) 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2466 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3724120 10484645 Alide2_3585 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004389427.1 3722918 R 596154 CDS YP_004389428.1 330826125 10484646 complement(3724170..3724880) 1 NC_015422.1 KEGG: ajs:Ajs_3121 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 3724880 10484646 Alide2_3586 Alicycliphilus denitrificans K601 ABC transporter YP_004389428.1 3724170 R 596154 CDS YP_004389429.1 330826126 10484647 complement(3724882..3725652) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2468 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 3725652 10484647 Alide2_3587 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004389429.1 3724882 R 596154 CDS YP_004389430.1 330826127 10484648 complement(3725815..3726597) 1 NC_015422.1 PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_2469 putative transcriptional regulator, ModE family; ModE family transcriptional regulator 3726597 10484648 Alide2_3588 Alicycliphilus denitrificans K601 ModE family transcriptional regulator YP_004389430.1 3725815 R 596154 CDS YP_004389431.1 330826128 10484649 3726664..3727428 1 NC_015422.1 KEGG: dia:Dtpsy_2470 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1; molybdenum ABC transporter substrate-binding protein 3727428 10484649 Alide2_3589 Alicycliphilus denitrificans K601 molybdenum ABC transporter substrate-binding protein YP_004389431.1 3726664 D 596154 CDS YP_004389432.1 330826129 10484650 3727522..3728205 1 NC_015422.1 KEGG: ajs:Ajs_3125 molybdate ABC transporter, inner membrane subunit; TIGRFAM: Molybdate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit 3728205 10484650 Alide2_3590 Alicycliphilus denitrificans K601 molybdate ABC transporter inner membrane subunit YP_004389432.1 3727522 D 596154 CDS YP_004389433.1 330826130 10484651 3728202..3729278 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Molybdate ABC transporter, ATP-binding protein; KEGG: ajs:Ajs_3126 molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 1; molybdate ABC transporter ATPase 3729278 10484651 Alide2_3591 Alicycliphilus denitrificans K601 molybdate ABC transporter ATPase YP_004389433.1 3728202 D 596154 CDS YP_004389434.1 330826131 10484652 3729393..3730322 1 NC_015422.1 KEGG: pna:Pnap_0462 hypothetical protein; hypothetical protein 3730322 10484652 Alide2_3592 Alicycliphilus denitrificans K601 hypothetical protein YP_004389434.1 3729393 D 596154 CDS YP_004389435.1 330826132 10484653 complement(3730343..3731170) 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ajs:Ajs_3127 extracellular solute-binding protein; family 1 extracellular solute-binding protein 3731170 10484653 Alide2_3593 Alicycliphilus denitrificans K601 family 1 extracellular solute-binding protein YP_004389435.1 3730343 R 596154 CDS YP_004389436.1 330826133 10484654 complement(3731167..3731943) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_3128 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase 3731943 10484654 Alide2_3594 Alicycliphilus denitrificans K601 phosphonate-transporting ATPase YP_004389436.1 3731167 R 596154 CDS YP_004389437.1 330826134 10484655 complement(3731940..3732674) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3129 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 3732674 10484655 Alide2_3595 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389437.1 3731940 R 596154 CDS YP_004389438.1 330826135 10484656 3732725..3733864 1 NC_015422.1 PFAM: HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_3130 molybdate metabolism transcriptional regulator; LysR family transcriptional regulator 3733864 10484656 Alide2_3596 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389438.1 3732725 D 596154 CDS YP_004389439.1 330826136 10484657 3733861..3735423 1 NC_015422.1 KEGG: maq:Maqu_3283 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 3735423 10484657 Alide2_3597 Alicycliphilus denitrificans K601 phospholipase D/transphosphatidylase YP_004389439.1 3733861 D 596154 CDS YP_004389440.1 330826137 10484658 complement(3735480..3737126) 1 NC_015422.1 KEGG: dia:Dtpsy_2483 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 3737126 10484658 Alide2_3598 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004389440.1 3735480 R 596154 CDS YP_004389441.1 330826138 10484659 3737466..3739391 1 NC_015422.1 TIGRFAM: DNA primase, DnaG; KEGG: ajs:Ajs_3137 DNA primase; DNA primase 3739391 10484659 Alide2_3599 Alicycliphilus denitrificans K601 DNA primase YP_004389441.1 3737466 D 596154 CDS YP_004389442.1 330826139 10484660 3739650..3742058 1 NC_015422.1 KEGG: dia:Dtpsy_2485 RNA polymerase, sigma 70 subunit, RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, non-essential domain; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; RNA polymerase sigma-710 subunit RpoD 3742058 10484660 Alide2_3600 Alicycliphilus denitrificans K601 RNA polymerase sigma-710 subunit RpoD YP_004389442.1 3739650 D 596154 CDS YP_004389443.1 330826140 10484662 3742323..3743006 1 NC_015422.1 KEGG: neu:NE0447 hypothetical protein; manually curated; PFAM: Methyladenine glycosylase; methyladenine glycosylase 3743006 10484662 Alide2_3602 Alicycliphilus denitrificans K601 methyladenine glycosylase YP_004389443.1 3742323 D 596154 CDS YP_004389444.1 330826141 10484663 3743053..3744003 1 NC_015422.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: ajs:Ajs_3139 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; 2-dehydropantoate 2-reductase 3744003 10484663 Alide2_3603 Alicycliphilus denitrificans K601 2-dehydropantoate 2-reductase YP_004389444.1 3743053 D 596154 CDS YP_004389445.1 330826142 10484664 complement(3744077..3745078) 1 NC_015422.1 KEGG: dia:Dtpsy_2488 hypothetical protein; hypothetical protein 3745078 10484664 Alide2_3604 Alicycliphilus denitrificans K601 hypothetical protein YP_004389445.1 3744077 R 596154 CDS YP_004389446.1 330826143 10484665 complement(3745112..3746305) 1 NC_015422.1 KEGG: ajs:Ajs_3142 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 3746305 10484665 Alide2_3605 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004389446.1 3745112 R 596154 CDS YP_004389447.1 330826144 10484666 complement(3746336..3747265) 1 NC_015422.1 KEGG: dia:Dtpsy_2490 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase 3747265 10484666 Alide2_3606 Alicycliphilus denitrificans K601 hydroxymethylglutaryl-CoA lyase YP_004389447.1 3746336 R 596154 CDS YP_004389448.1 330826145 10484667 3747374..3748303 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_3144 LysR family transcriptional regulator; LysR family transcriptional regulator 3748303 10484667 Alide2_3607 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389448.1 3747374 D 596154 CDS YP_004389449.1 330826146 10484668 3748455..3748760 1 NC_015422.1 KEGG: dia:Dtpsy_2492 putative transcriptional regulator; transcriptional regulator 3748760 10484668 Alide2_3608 Alicycliphilus denitrificans K601 transcriptional regulator YP_004389449.1 3748455 D 596154 CDS YP_004389450.1 330826147 10484669 3748876..3749235 1 NC_015422.1 KEGG: dia:Dtpsy_2493 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidyl-prolyl isomerase 3749235 10484669 Alide2_3609 Alicycliphilus denitrificans K601 peptidyl-prolyl isomerase YP_004389450.1 3748876 D 596154 CDS YP_004389451.1 330826148 10484670 complement(3749293..3750684) 1 NC_015422.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: dia:Dtpsy_2494 ribosomal protein S12 methylthiotransferase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM; 30S ribosomal protein S12 methylthiotransferase RimO 3750684 10484670 Alide2_3610 Alicycliphilus denitrificans K601 30S ribosomal protein S12 methylthiotransferase RimO YP_004389451.1 3749293 R 596154 CDS YP_004389452.1 330826149 10484671 complement(3750722..3751261) 1 NC_015422.1 KEGG: dia:Dtpsy_2495 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: Polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding, N-terminal; PHB accumulation regulatory; polyhydroxyalkonate synthesis repressor PhaR 3751261 10484671 Alide2_3611 Alicycliphilus denitrificans K601 polyhydroxyalkonate synthesis repressor PhaR YP_004389452.1 3750722 R 596154 CDS YP_004389453.1 330826150 10484672 complement(3751454..3751762) 1 NC_015422.1 KEGG: dia:Dtpsy_2389 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain; RNP-1 like RNA-binding protein 3751762 10484672 Alide2_3612 Alicycliphilus denitrificans K601 RNP-1 like RNA-binding protein YP_004389453.1 3751454 R 596154 CDS YP_004389454.1 330826151 10484673 complement(3751827..3752042) 1 NC_015422.1 KEGG: dia:Dtpsy_2387 hypothetical protein; hypothetical protein 3752042 10484673 Alide2_3613 Alicycliphilus denitrificans K601 hypothetical protein YP_004389454.1 3751827 R 596154 CDS YP_004389455.1 330826152 10484675 complement(3752581..3754827) 1 NC_015422.1 SMART: RelA/SpoT; TIGRFAM: RelA/SpoT protein; KEGG: ajs:Ajs_3149 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; TGS; Amino acid-binding ACT; (p)ppGpp synthetase I SpoT/RelA 3754827 10484675 Alide2_3614 Alicycliphilus denitrificans K601 (p)ppGpp synthetase I SpoT/RelA YP_004389455.1 3752581 R 596154 CDS YP_004389456.1 330826153 10484676 complement(3754824..3755765) 1 NC_015422.1 KEGG: ajs:Ajs_3150 alpha/beta hydrolase fold; manually curated; PFAM: Alpha/beta hydrolase fold-1; alpha/beta fold family hydrolase 3755765 10484676 Alide2_3615 Alicycliphilus denitrificans K601 alpha/beta fold family hydrolase YP_004389456.1 3754824 R 596154 CDS YP_004389457.1 330826154 10484677 3755835..3756617 1 NC_015422.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; KEGG: dia:Dtpsy_2498 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxybutyrate dehydrogenase 3756617 10484677 Alide2_3616 Alicycliphilus denitrificans K601 3-hydroxybutyrate dehydrogenase YP_004389457.1 3755835 D 596154 CDS YP_004389458.1 330826155 10484678 complement(3756672..3757400) 1 NC_015422.1 PFAM: Protein of unknown function DUF541; KEGG: dia:Dtpsy_2499 protein of unknown function DUF541; hypothetical protein 3757400 10484678 Alide2_3617 Alicycliphilus denitrificans K601 hypothetical protein YP_004389458.1 3756672 R 596154 CDS YP_004389459.1 330826156 10484679 3757597..3758328 1 NC_015422.1 KEGG: dia:Dtpsy_2500 osmolarity response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 3758328 10484679 Alide2_3618 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004389459.1 3757597 D 596154 CDS YP_004389460.1 330826157 10484680 3758401..3759906 1 NC_015422.1 KEGG: dia:Dtpsy_2501 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; integral membrane sensor signal transduction histidine kinase 3759906 10484680 Alide2_3619 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004389460.1 3758401 D 596154 CDS YP_004389461.1 330826158 10484681 complement(3759979..3760458) 1 NC_015422.1 KEGG: dia:Dtpsy_2502 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3760458 10484681 Alide2_3620 Alicycliphilus denitrificans K601 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_004389461.1 3759979 R 596154 CDS YP_004389462.1 330826159 10484682 complement(3760479..3761327) 1 NC_015422.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: dia:Dtpsy_2503 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3761327 10484682 Alide2_3621 Alicycliphilus denitrificans K601 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004389462.1 3760479 R 596154 CDS YP_004389463.1 330826160 10484683 3761406..3764897 1 NC_015422.1 TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Transcription-repair-coupling factor domain; KEGG: ajs:Ajs_3157 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; transcription-repair coupling factor 3764897 10484683 Alide2_3622 Alicycliphilus denitrificans K601 transcription-repair coupling factor YP_004389463.1 3761406 D 596154 CDS YP_004389464.1 330826161 10484684 3764904..3765584 1 NC_015422.1 KEGG: dia:Dtpsy_2505 hypothetical protein; hypothetical protein 3765584 10484684 Alide2_3623 Alicycliphilus denitrificans K601 hypothetical protein YP_004389464.1 3764904 D 596154 CDS YP_004389465.1 330826162 10484685 complement(3765751..3767925) 1 NC_015422.1 KEGG: ppw:PputW619_2172 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; Mannitol dehydrogenase, C-terminal; HAD-superfamily hydrolase 3767925 10484685 Alide2_3624 Alicycliphilus denitrificans K601 HAD-superfamily hydrolase YP_004389465.1 3765751 R 596154 CDS YP_004389466.1 330826163 10484686 3768267..3768986 1 NC_015422.1 TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: dia:Dtpsy_2506 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase-like hydrolase; phosphoserine phosphatase SerB 3768986 10484686 Alide2_3625 Alicycliphilus denitrificans K601 phosphoserine phosphatase SerB YP_004389466.1 3768267 D 596154 CDS YP_004389467.1 330826164 10484687 3769043..3769786 1 NC_015422.1 KEGG: ajs:Ajs_3314 LytR/AlgR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; LytTR family two component transcriptional regulator 3769786 10484687 Alide2_3626 Alicycliphilus denitrificans K601 LytTR family two component transcriptional regulator YP_004389467.1 3769043 D 596154 CDS YP_004389468.1 330826165 10484688 complement(3769886..3770704) 1 NC_015422.1 PFAM: Zinc/iron permease; KEGG: dia:Dtpsy_2667 zinc/iron permease; zinc/iron permease 3770704 10484688 Alide2_3627 Alicycliphilus denitrificans K601 zinc/iron permease YP_004389468.1 3769886 R 596154 CDS YP_004389469.1 330826166 10484689 complement(3770815..3771699) 1 NC_015422.1 KEGG: dia:Dtpsy_2668 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase; carboxymethylenebutenolidase 3771699 10484689 Alide2_3628 Alicycliphilus denitrificans K601 carboxymethylenebutenolidase YP_004389469.1 3770815 R 596154 CDS YP_004389470.1 330826167 10484690 complement(3771785..3772549) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: bpt:Bpet4160 putative enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 3772549 10484690 Alide2_3629 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004389470.1 3771785 R 596154 CDS YP_004389471.1 330826168 10484691 complement(3772573..3773766) 1 NC_015422.1 KEGG: bpt:Bpet4161 acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; formyl-CoA transferase 3773766 10484691 Alide2_3630 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004389471.1 3772573 R 596154 CDS YP_004389472.1 330826169 10484692 complement(3773794..3774768) 1 NC_015422.1 KEGG: bpt:Bpet4162 putative secreted protein; hypothetical protein 3774768 10484692 Alide2_3631 Alicycliphilus denitrificans K601 hypothetical protein YP_004389472.1 3773794 R 596154 CDS YP_004389473.1 330826170 10484693 3774903..3775898 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_A3085 LysR family transcriptional regulator; LysR family transcriptional regulator 3775898 10484693 Alide2_3632 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389473.1 3774903 D 596154 CDS YP_004389474.1 330826171 10484694 complement(3775906..3776430) 1 NC_015422.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: axy:AXYL_04995 alkylhydroperoxidase AhpD family core domain-containing protein 7; carboxymuconolactone decarboxylase 3776430 10484694 Alide2_3633 Alicycliphilus denitrificans K601 carboxymuconolactone decarboxylase YP_004389474.1 3775906 R 596154 CDS YP_004389475.1 330826172 10484695 complement(3776450..3777418) 1 NC_015422.1 KEGG: dac:Daci_0250 hypothetical protein; hypothetical protein 3777418 10484695 Alide2_3634 Alicycliphilus denitrificans K601 hypothetical protein YP_004389475.1 3776450 R 596154 CDS YP_004389476.1 330826173 10484696 complement(3777451..3778266) 1 NC_015422.1 KEGG: axy:AXYL_00411 short chain dehydrogenase family protein 3; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 3778266 10484696 Alide2_3635 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004389476.1 3777451 R 596154 CDS YP_004389477.1 330826174 10484697 3778343..3779272 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: axy:AXYL_00410 LysR family regulatory helix-turn-helix protein 12; LysR family transcriptional regulator 3779272 10484697 Alide2_3636 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389477.1 3778343 D 596154 CDS YP_004389478.1 330826175 10484698 complement(3779289..3782054) 1 NC_015422.1 SMART: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; TIGRFAM: DNA polymerase 1; KEGG: dia:Dtpsy_2669 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; DNA polymerase I 3782054 10484698 Alide2_3637 Alicycliphilus denitrificans K601 DNA polymerase I YP_004389478.1 3779289 R 596154 CDS YP_004389479.1 330826176 10484699 3782136..3782558 1 NC_015422.1 KEGG: ajs:Ajs_3318 hypothetical protein; hypothetical protein 3782558 10484699 Alide2_3638 Alicycliphilus denitrificans K601 hypothetical protein YP_004389479.1 3782136 D 596154 CDS YP_004389480.1 330826177 10484700 3782590..3782955 1 NC_015422.1 PFAM: Protein of unknown function DUF2782; KEGG: dia:Dtpsy_2671 hypothetical protein; hypothetical protein 3782955 10484700 Alide2_3639 Alicycliphilus denitrificans K601 hypothetical protein YP_004389480.1 3782590 D 596154 CDS YP_004389481.1 330826178 10484701 3783033..3783983 1 NC_015422.1 TIGRFAM: Homoserine kinase ThrB; KEGG: ajs:Ajs_3320 homoserine kinase; PFAM: Aminoglycoside phosphotransferase; homoserine kinase 3783983 10484701 Alide2_3640 Alicycliphilus denitrificans K601 homoserine kinase YP_004389481.1 3783033 D 596154 CDS YP_004389482.1 330826179 10484702 3784030..3784851 1 NC_015422.1 KEGG: ajs:Ajs_3321 hypothetical protein; hypothetical protein 3784851 10484702 Alide2_3641 Alicycliphilus denitrificans K601 hypothetical protein YP_004389482.1 3784030 D 596154 CDS YP_004389483.1 330826180 10484703 complement(3784864..3786480) 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Extracellular solute-binding protein, family 3; KEGG: dba:Dbac_1471 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Extracellular solute-binding protein, family 3; extracellular sensor-containing diguanylate cyclase 3786480 10484703 Alide2_3642 Alicycliphilus denitrificans K601 extracellular sensor-containing diguanylate cyclase YP_004389483.1 3784864 R 596154 CDS YP_004389484.1 330826181 10484704 3786748..3788697 1 NC_015422.1 PFAM: Protein of unknown function DUF839; KEGG: aav:Aave_1926 putative exported alkaline phosphatase; hypothetical protein 3788697 10484704 Alide2_3643 Alicycliphilus denitrificans K601 hypothetical protein YP_004389484.1 3786748 D 596154 CDS YP_004389485.1 330826182 10484705 complement(3788719..3791109) 1 NC_015422.1 PFAM: DNA helicase, UvrD/REP type; KEGG: dia:Dtpsy_2677 UvrD/REP helicase; UvrD/REP helicase 3791109 10484705 Alide2_3644 Alicycliphilus denitrificans K601 UvrD/REP helicase YP_004389485.1 3788719 R 596154 CDS YP_004389486.1 330826183 10484706 3791311..3792288 1 NC_015422.1 TIGRFAM: Guanosine monophosphate reductase 2; KEGG: aav:Aave_1911 guanosine 5'-monophosphate oxidoreductase; PFAM: IMP dehydrogenase/GMP reductase; guanosine monophosphate reductase 3792288 10484706 Alide2_3645 Alicycliphilus denitrificans K601 guanosine monophosphate reductase YP_004389486.1 3791311 D 596154 CDS YP_004389487.1 330826184 10484708 complement(3792625..3792948) 1 NC_015422.1 PFAM: Protein of unknown function DUF2149; KEGG: dia:Dtpsy_2683 hypothetical protein; hypothetical protein 3792948 10484708 Alide2_3646 Alicycliphilus denitrificans K601 hypothetical protein YP_004389487.1 3792625 R 596154 CDS YP_004389488.1 330826185 10484709 complement(3792945..3793481) 1 NC_015422.1 KEGG: gpb:HDN1F_26000 hypothetical protein; hypothetical protein 3793481 10484709 Alide2_3647 Alicycliphilus denitrificans K601 hypothetical protein YP_004389488.1 3792945 R 596154 CDS YP_004389489.1 330826186 10484710 complement(3793544..3794140) 1 NC_015422.1 KEGG: lma:LmjF27.0240 kinetoplast-associated protein-like protein; kinetoplast-associated protein-like protein 3794140 10484710 Alide2_3648 Alicycliphilus denitrificans K601 kinetoplast-associated protein-like protein YP_004389489.1 3793544 R 596154 CDS YP_004389490.1 330826187 10484711 complement(3795030..3799097) 1 NC_015422.1 KEGG: dia:Dtpsy_2685 cobaltochelatase; PFAM: CobN/magnesium chelatase; cobaltochelatase 3799097 10484711 Alide2_3649 Alicycliphilus denitrificans K601 cobaltochelatase YP_004389490.1 3795030 R 596154 CDS YP_004389491.1 330826188 10484712 complement(3799149..3801104) 1 NC_015422.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dia:Dtpsy_2686 TonB-dependent receptor plug; TonB-dependent receptor plug 3801104 10484712 Alide2_3650 Alicycliphilus denitrificans K601 TonB-dependent receptor plug YP_004389491.1 3799149 R 596154 CDS YP_004389492.1 330826189 10484713 complement(3801424..3802593) 1 NC_015422.1 PFAM: NnrS; KEGG: dia:Dtpsy_2680 NnrS family protein; NnrS family protein 3802593 10484713 Alide2_3651 Alicycliphilus denitrificans K601 NnrS family protein YP_004389492.1 3801424 R 596154 CDS YP_004389493.1 330826190 10484714 complement(3802715..3803575) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2681 ABC transporter related; SMART: ATPase, AAA+ type, core; taurine-transporting ATPase 3803575 10484714 Alide2_3652 Alicycliphilus denitrificans K601 taurine-transporting ATPase YP_004389493.1 3802715 R 596154 CDS YP_004389494.1 330826191 10484715 complement(3803595..3804401) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_2682 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 3804401 10484715 Alide2_3653 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389494.1 3803595 R 596154 CDS YP_004389495.1 330826192 10484716 complement(3804398..3805414) 1 NC_015422.1 KEGG: dia:Dtpsy_2687 putative periplasmic component of ABC-type transport system; ABC transporter periplasmic protein 3805414 10484716 Alide2_3654 Alicycliphilus denitrificans K601 ABC transporter periplasmic protein YP_004389495.1 3804398 R 596154 CDS YP_004389496.1 330826193 10484717 complement(3805416..3807569) 1 NC_015422.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dia:Dtpsy_2688 TonB-dependent receptor; TonB-dependent receptor 3807569 10484717 Alide2_3655 Alicycliphilus denitrificans K601 TonB-dependent receptor YP_004389496.1 3805416 R 596154 CDS YP_004389497.1 330826194 10484718 3807645..3808376 1 NC_015422.1 KEGG: dia:Dtpsy_2689 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; Crp/Fnr family transcriptional regulator 3808376 10484718 Alide2_3656 Alicycliphilus denitrificans K601 Crp/Fnr family transcriptional regulator YP_004389497.1 3807645 D 596154 CDS YP_004389498.1 330826195 10484719 3808412..3808771 1 NC_015422.1 KEGG: ajs:Ajs_3342 hypothetical protein; hypothetical protein 3808771 10484719 Alide2_3657 Alicycliphilus denitrificans K601 hypothetical protein YP_004389498.1 3808412 D 596154 CDS YP_004389499.1 330826196 10484720 3808851..3809336 1 NC_015422.1 PFAM: DR1885-like metal-binding protein; KEGG: dia:Dtpsy_2691 protein of unknown function DUF461; hypothetical protein 3809336 10484720 Alide2_3658 Alicycliphilus denitrificans K601 hypothetical protein YP_004389499.1 3808851 D 596154 CDS YP_004389500.1 330826197 10484721 3809524..3810756 1 NC_015422.1 KEGG: ajs:Ajs_3344 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1; Bcr/CflA subfamily drug resistance transporter 3810756 10484721 Alide2_3659 Alicycliphilus denitrificans K601 Bcr/CflA subfamily drug resistance transporter YP_004389500.1 3809524 D 596154 CDS YP_004389501.1 330826198 10484722 complement(3810779..3811621) 1 NC_015422.1 KEGG: vap:Vapar_0607 hypothetical protein; hypothetical protein 3811621 10484722 Alide2_3660 Alicycliphilus denitrificans K601 hypothetical protein YP_004389501.1 3810779 R 596154 CDS YP_004389502.1 330826199 10484723 complement(3811671..3811967) 1 NC_015422.1 PFAM: YCII-related; KEGG: cti:RALTA_B1424 YciI-like protein; hypothetical protein 3811967 10484723 Alide2_3661 Alicycliphilus denitrificans K601 hypothetical protein YP_004389502.1 3811671 R 596154 CDS YP_004389503.1 330826200 10484724 complement(3812006..3812989) 1 NC_015422.1 KEGG: reh:PHG396 putative NagM-like protein; NagM-like protein 3812989 10484724 Alide2_3662 Alicycliphilus denitrificans K601 NagM-like protein YP_004389503.1 3812006 R 596154 CDS YP_004389504.1 330826201 10484725 3813218..3813907 1 NC_015422.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: rpf:Rpic12D_2066 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3813907 10484725 Alide2_3663 Alicycliphilus denitrificans K601 3-oxoacid CoA-transferase subunit A YP_004389504.1 3813218 D 596154 CDS YP_004389505.1 330826202 10484726 3813904..3814557 1 NC_015422.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: lch:Lcho_0832 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3814557 10484726 Alide2_3664 Alicycliphilus denitrificans K601 3-oxoacid CoA-transferase subunit B YP_004389505.1 3813904 D 596154 CDS YP_004389506.1 330826203 10484727 3814603..3814881 1 NC_015422.1 TIGRFAM: Muconolactone delta-isomerase; KEGG: mno:Mnod_2374 muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase 3814881 10484727 Alide2_3665 Alicycliphilus denitrificans K601 muconolactone delta-isomerase YP_004389506.1 3814603 D 596154 CDS YP_004389507.1 330826204 10484728 3814895..3815788 1 NC_015422.1 KEGG: reu:Reut_A1508 beta-lactamase-like; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 3815788 10484728 Alide2_3666 Alicycliphilus denitrificans K601 beta-lactamase domain-containing protein YP_004389507.1 3814895 D 596154 CDS YP_004389508.1 330826205 10484729 complement(3815755..3816681) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_A1507 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 3816681 10484729 Alide2_3667 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389508.1 3815755 R 596154 CDS YP_004389509.1 330826206 10484730 3816854..3817738 1 NC_015422.1 KEGG: vap:Vapar_0607 hypothetical protein; hypothetical protein 3817738 10484730 Alide2_3668 Alicycliphilus denitrificans K601 hypothetical protein YP_004389509.1 3816854 D 596154 CDS YP_004389510.1 330826207 10484731 complement(3817745..3819208) 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: aav:Aave_1895 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 3819208 10484731 Alide2_3669 Alicycliphilus denitrificans K601 diguanylate cyclase YP_004389510.1 3817745 R 596154 CDS YP_004389511.1 330826208 10484732 complement(3819329..3821101) 1 NC_015422.1 KEGG: dia:Dtpsy_2693 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase 3821101 10484732 Alide2_3670 Alicycliphilus denitrificans K601 DEAD/DEAH box helicase YP_004389511.1 3819329 R 596154 CDS YP_004389512.1 330826209 10484733 complement(3821368..3822501) 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: vap:Vapar_5221 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3822501 10484733 Alide2_3671 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004389512.1 3821368 R 596154 CDS YP_004389513.1 330826210 10484734 complement(3822625..3823236) 1 NC_015422.1 KEGG: dia:Dtpsy_2694 oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; Exonuclease RNase T and DNA polymerase III 3823236 10484734 Alide2_3672 Alicycliphilus denitrificans K601 Exonuclease RNase T and DNA polymerase III YP_004389513.1 3822625 R 596154 CDS YP_004389514.1 330826211 10484735 3823256..3824548 1 NC_015422.1 KEGG: dia:Dtpsy_2695 STE24 endopeptidase; PFAM: Peptidase M48; Ste24 endopeptidase 3824548 10484735 Alide2_3673 Alicycliphilus denitrificans K601 Ste24 endopeptidase YP_004389514.1 3823256 D 596154 CDS YP_004389515.1 330826212 10484736 3824545..3824883 1 NC_015422.1 manually curated; HAMAP: Transcriptional coactivator/pterin dehydratase; KEGG: dia:Dtpsy_2696 transcriptional coactivator/pterin dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase; pterin-4-alpha-carbinolamine dehydratase 3824883 10484736 Alide2_3674 Alicycliphilus denitrificans K601 pterin-4-alpha-carbinolamine dehydratase YP_004389515.1 3824545 D 596154 CDS YP_004389516.1 330826213 10484737 3824893..3825864 1 NC_015422.1 KEGG: dia:Dtpsy_2697 ribosome small subunit-dependent GTPase A; TIGRFAM: Ribosome biogenesis GTPase RsgA, putative; PFAM: Ribosome biogenesis GTPase RsgA, putative; ribosome small subunit-dependent GTPase A 3825864 10484737 Alide2_3675 Alicycliphilus denitrificans K601 ribosome small subunit-dependent GTPase A YP_004389516.1 3824893 D 596154 CDS YP_004389517.1 330826214 10484738 3825879..3827537 1 NC_015422.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: axy:AXYL_00922 permease family protein 1; sulfate transporter 3827537 10484738 Alide2_3676 Alicycliphilus denitrificans K601 sulfate transporter YP_004389517.1 3825879 D 596154 CDS YP_004389518.1 330826215 10484739 complement(3827544..3828626) 1 NC_015422.1 TIGRFAM: Histidinol-phosphate aminotransferase; KEGG: vap:Vapar_1479 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/classII; histidinol-phosphate aminotransferase 3828626 10484739 Alide2_3677 Alicycliphilus denitrificans K601 histidinol-phosphate aminotransferase YP_004389518.1 3827544 R 596154 CDS YP_004389519.1 330826216 10484740 complement(3828702..3829691) 1 NC_015422.1 PFAM: Cobalamin biosynthesis CobD/CbiB; KEGG: dia:Dtpsy_2698 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB 3829691 10484740 Alide2_3678 Alicycliphilus denitrificans K601 cobalamin biosynthesis protein CbiB YP_004389519.1 3828702 R 596154 CDS YP_004389520.1 330826217 10484741 complement(3829738..3830421) 1 NC_015422.1 PFAM: NUDIX hydrolase domain; KEGG: ajs:Ajs_3351 NUDIX hydrolase; NUDIX hydrolase 3830421 10484741 Alide2_3679 Alicycliphilus denitrificans K601 NUDIX hydrolase YP_004389520.1 3829738 R 596154 CDS YP_004389521.1 330826218 10484742 complement(3830532..3830918) 1 NC_015422.1 KEGG: dac:Daci_5342 ribosomal protein L19; TIGRFAM: Ribosomal protein L19; PFAM: Ribosomal protein L19; 50S ribosomal protein L19 3830918 10484742 Alide2_3680 Alicycliphilus denitrificans K601 50S ribosomal protein L19 YP_004389521.1 3830532 R 596154 CDS YP_004389522.1 330826219 10484743 complement(3831038..3831805) 1 NC_015422.1 PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: ajs:Ajs_3353 tRNA (guanine-N(1)-)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 3831805 10484743 Alide2_3681 Alicycliphilus denitrificans K601 tRNA (guanine-N(1)-)-methyltransferase YP_004389522.1 3831038 R 596154 CDS YP_004389523.1 330826220 10484744 complement(3831813..3832385) 1 NC_015422.1 KEGG: dia:Dtpsy_2702 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel; 16S rRNA processing protein RimM 3832385 10484744 Alide2_3682 Alicycliphilus denitrificans K601 16S rRNA processing protein RimM YP_004389523.1 3831813 R 596154 CDS YP_004389524.1 330826221 10484745 complement(3832479..3832733) 1 NC_015422.1 KEGG: dia:Dtpsy_2703 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; 30S ribosomal protein S16 3832733 10484745 Alide2_3683 Alicycliphilus denitrificans K601 30S ribosomal protein S16 YP_004389524.1 3832479 R 596154 CDS YP_004389525.1 330826222 10484746 3832850..3833377 1 NC_015422.1 KEGG: dia:Dtpsy_2704 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; phosphinothricin acetyltransferase 3833377 10484746 Alide2_3684 Alicycliphilus denitrificans K601 phosphinothricin acetyltransferase YP_004389525.1 3832850 D 596154 CDS YP_004389526.1 330826223 10484747 3833400..3833846 1 NC_015422.1 KEGG: dia:Dtpsy_2705 hypothetical protein; hypothetical protein 3833846 10484747 Alide2_3685 Alicycliphilus denitrificans K601 hypothetical protein YP_004389526.1 3833400 D 596154 CDS YP_004389527.1 330826224 10484748 complement(3833900..3834910) 1 NC_015422.1 PFAM: Phosphate transporter; KEGG: dia:Dtpsy_2706 phosphate transporter; phosphate transporter 3834910 10484748 Alide2_3686 Alicycliphilus denitrificans K601 phosphate transporter YP_004389527.1 3833900 R 596154 CDS YP_004389528.1 330826225 10484749 complement(3834931..3835578) 1 NC_015422.1 PFAM: Putitive phosphate transport regulator; KEGG: dia:Dtpsy_2707 protein of unknown function DUF47; phosphate transport regulator 3835578 10484749 Alide2_3687 Alicycliphilus denitrificans K601 phosphate transport regulator YP_004389528.1 3834931 R 596154 CDS YP_004389529.1 330826226 10484750 3835818..3836414 1 NC_015422.1 KEGG: aav:Aave_1879 OmpA domain-containing protein; OmpA domain-containing protein 3836414 10484750 Alide2_3688 Alicycliphilus denitrificans K601 OmpA domain-containing protein YP_004389529.1 3835818 D 596154 CDS YP_004389530.1 330826227 10484751 complement(3836453..3836818) 1 NC_015422.1 PFAM: Protein of unknown function DUF486; KEGG: dia:Dtpsy_2708 protein of unknown function DUF486; hypothetical protein 3836818 10484751 Alide2_3689 Alicycliphilus denitrificans K601 hypothetical protein YP_004389530.1 3836453 R 596154 CDS YP_004389531.1 330826228 10484752 complement(3836911..3837639) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_3361 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 3837639 10484752 Alide2_3690 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004389531.1 3836911 R 596154 CDS YP_004389532.1 330826229 10484753 complement(3837643..3838425) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2710 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 3838425 10484753 Alide2_3691 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004389532.1 3837643 R 596154 CDS YP_004389533.1 330826230 10484754 complement(3838447..3839523) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2711 inner-membrane translocator; ABC transporter permease 3839523 10484754 Alide2_3692 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389533.1 3838447 R 596154 CDS YP_004389534.1 330826231 10484755 complement(3839540..3840469) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2712 inner-membrane translocator; ABC transporter permease 3840469 10484755 Alide2_3693 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389534.1 3839540 R 596154 CDS YP_004389535.1 330826232 10484756 complement(3840668..3841987) 1 NC_015422.1 KEGG: xtr:100494158 replication-associated recombination protein A-like; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase 3841987 10484756 Alide2_3694 Alicycliphilus denitrificans K601 AAA ATPase YP_004389535.1 3840668 R 596154 CDS YP_004389536.1 330826233 10484757 complement(3841984..3842982) 1 NC_015422.1 KEGG: dia:Dtpsy_2714 integron integrase; TIGRFAM: Integrase, integron-type; PFAM: Integrase, catalytic core, phage; integron integrase 3842982 10484757 Alide2_3695 Alicycliphilus denitrificans K601 integron integrase YP_004389536.1 3841984 R 596154 CDS YP_004389537.1 330826234 10484758 3843159..3843521 1 NC_015422.1 KEGG: syc:syc1951_c hypothetical protein; manually curated; PFAM: Cupin 2, conserved barrel; cupin 2 barrel domain-containing protein 3843521 10484758 Alide2_3696 Alicycliphilus denitrificans K601 cupin 2 barrel domain-containing protein YP_004389537.1 3843159 D 596154 CDS YP_004389538.1 330826235 10484759 3843954..3844841 1 NC_015422.1 KEGG: pen:PSEEN2126 hypothetical protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; PDZ/DHR/GLGF domain-containing protein 3844841 10484759 Alide2_3697 Alicycliphilus denitrificans K601 PDZ/DHR/GLGF domain-containing protein YP_004389538.1 3843954 D 596154 CDS YP_004389539.1 330826236 10484760 3844911..3845588 1 NC_015422.1 KEGG: hch:HCH_04433 restriction endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 3845588 10484760 Alide2_3698 Alicycliphilus denitrificans K601 HNH endonuclease YP_004389539.1 3844911 D 596154 CDS YP_004389540.1 330826237 10484761 3845653..3845898 1 NC_015422.1 KEGG: dia:Dtpsy_2715 protein of unknown function DUF1010; manually curated; PFAM: Protein of unknown function DUF1010; hypothetical protein 3845898 10484761 Alide2_3699 Alicycliphilus denitrificans K601 hypothetical protein YP_004389540.1 3845653 D 596154 CDS YP_004389541.1 330826238 10484762 3845923..3846939 1 NC_015422.1 KEGG: has:Halsa_0231 hypothetical protein; hypothetical protein 3846939 10484762 Alide2_3700 Alicycliphilus denitrificans K601 hypothetical protein YP_004389541.1 3845923 D 596154 CDS YP_004389542.1 330826239 10484763 3847009..3847551 1 NC_015422.1 manually curated; KEGG: vex:VEA_003218 hypothetical protein; hypothetical protein 3847551 10484763 Alide2_3701 Alicycliphilus denitrificans K601 hypothetical protein YP_004389542.1 3847009 D 596154 CDS YP_004389543.1 330826240 10484764 complement(3847685..3848518) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region; integrase catalytic subunit 3848518 10484764 Alide2_3702 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004389543.1 3847685 R 596154 CDS YP_004389544.1 330826241 10484765 complement(3848551..3848817) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 3848817 10484765 Alide2_3703 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389544.1 3848551 R 596154 CDS YP_004389545.1 330826242 10484766 3849536..3850252 1 NC_015422.1 KEGG: bcm:Bcenmc03_4077 hypothetical protein; hypothetical protein 3850252 10484766 Alide2_3704 Alicycliphilus denitrificans K601 hypothetical protein YP_004389545.1 3849536 D 596154 CDS YP_004389546.1 330826243 10484767 3850685..3850990 1 NC_015422.1 PFAM: Protein of unknown function DUF2091, periplasmic; KEGG: ctt:CtCNB1_3965 hypothetical protein; hypothetical protein 3850990 10484767 Alide2_3705 Alicycliphilus denitrificans K601 hypothetical protein YP_004389546.1 3850685 D 596154 CDS YP_004389547.1 330826244 10484768 3851119..3851253 1 NC_015422.1 hypothetical protein 3851253 10484768 Alide2_3706 Alicycliphilus denitrificans K601 hypothetical protein YP_004389547.1 3851119 D 596154 CDS YP_004389548.1 330826245 10484769 3851250..3851840 1 NC_015422.1 KEGG: dia:Dtpsy_2718 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily 3851840 10484769 Alide2_3707 Alicycliphilus denitrificans K601 uracil-DNA glycosylase superfamily YP_004389548.1 3851250 D 596154 CDS YP_004389549.1 330826246 10484770 3851863..3852819 1 NC_015422.1 PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 1,4-dihydroxy-2-naphthoate octaprenyltransferase; UbiA prenyltransferase 3852819 10484770 Alide2_3708 Alicycliphilus denitrificans K601 UbiA prenyltransferase YP_004389549.1 3851863 D 596154 CDS YP_004389550.1 330826247 10484771 complement(3852823..3853455) 1 NC_015422.1 TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: ajs:Ajs_3381 outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA; outer-membrane lipoprotein carrier protein 3853455 10484771 Alide2_3709 Alicycliphilus denitrificans K601 outer-membrane lipoprotein carrier protein YP_004389550.1 3852823 R 596154 CDS YP_004389551.1 330826248 10484772 complement(3853467..3855803) 1 NC_015422.1 KEGG: ajs:Ajs_3382 DNA translocase FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; cell division protein FtsK 3855803 10484772 Alide2_3710 Alicycliphilus denitrificans K601 cell division protein FtsK YP_004389551.1 3853467 R 596154 CDS YP_004389552.1 330826249 10484773 3855948..3856898 1 NC_015422.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; manually curated; KEGG: dia:Dtpsy_2721 thioredoxin reductase; TIGRFAM: Thioredoxin reductase; thioredoxin reductase 3856898 10484773 Alide2_3711 Alicycliphilus denitrificans K601 thioredoxin reductase YP_004389552.1 3855948 D 596154 CDS YP_004389553.1 330826250 10484774 3857050..3857283 1 NC_015422.1 TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: ctt:CtCNB1_0883 ribosomal protein L28; PFAM: Ribosomal protein L28; 50S ribosomal protein L28 3857283 10484774 Alide2_3712 Alicycliphilus denitrificans K601 50S ribosomal protein L28 YP_004389553.1 3857050 D 596154 CDS YP_004389554.1 330826251 10484775 3857304..3857474 1 NC_015422.1 KEGG: dia:Dtpsy_2723 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; PFAM: Ribosomal protein L33; 50S ribosomal protein L33 3857474 10484775 Alide2_3713 Alicycliphilus denitrificans K601 50S ribosomal protein L33 YP_004389554.1 3857304 D 596154 CDS YP_004389555.1 330826252 10484776 complement(3857586..3858905) 1 NC_015422.1 PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: aav:Aave_3433 Fmu (Sun) domain-containing protein; Fmu (Sun) domain-containing protein 3858905 10484776 Alide2_3714 Alicycliphilus denitrificans K601 Fmu (Sun) domain-containing protein YP_004389555.1 3857586 R 596154 CDS YP_004389556.1 330826253 10484777 complement(3859021..3859602) 1 NC_015422.1 TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: dac:Daci_5372 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; phosphoribosylglycinamide formyltransferase 3859602 10484777 Alide2_3715 Alicycliphilus denitrificans K601 phosphoribosylglycinamide formyltransferase YP_004389556.1 3859021 R 596154 CDS YP_004389557.1 330826254 10484778 3859623..3860312 1 NC_015422.1 KEGG: ctt:CtCNB1_0874 hypothetical protein; HAMAP: Protein of unknown function DUF480; PFAM: Protein of unknown function DUF480; hypothetical protein 3860312 10484778 Alide2_3716 Alicycliphilus denitrificans K601 hypothetical protein YP_004389557.1 3859623 D 596154 CDS YP_004389558.1 330826255 10484779 3860358..3861539 1 NC_015422.1 PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: dia:Dtpsy_2731 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3861539 10484779 Alide2_3717 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004389558.1 3860358 D 596154 CDS YP_004389559.1 330826256 10484780 3861554..3862669 1 NC_015422.1 PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: dia:Dtpsy_2732 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3862669 10484780 Alide2_3718 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004389559.1 3861554 D 596154 CDS YP_004389560.1 330826257 10484781 complement(3862724..3863281) 1 NC_015422.1 KEGG: dia:Dtpsy_2733 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 3863281 10484781 Alide2_3719 Alicycliphilus denitrificans K601 HNH endonuclease YP_004389560.1 3862724 R 596154 CDS YP_004389561.1 330826258 10484782 3863435..3864481 1 NC_015422.1 SMART: Riboflavin kinase; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: ajs:Ajs_3398 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein RibF 3864481 10484782 Alide2_3720 Alicycliphilus denitrificans K601 riboflavin biosynthesis protein RibF YP_004389561.1 3863435 D 596154 CDS YP_004389562.1 330826259 10484783 3864572..3867427 1 NC_015422.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase, class Ia; KEGG: dia:Dtpsy_2735 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 3867427 10484783 Alide2_3721 Alicycliphilus denitrificans K601 isoleucyl-tRNA synthetase YP_004389562.1 3864572 D 596154 CDS YP_004389563.1 330826260 10484784 3867427..3867924 1 NC_015422.1 TIGRFAM: Peptidase A8, signal peptidase II; KEGG: dia:Dtpsy_2736 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; lipoprotein signal peptidase 3867924 10484784 Alide2_3722 Alicycliphilus denitrificans K601 lipoprotein signal peptidase YP_004389563.1 3867427 D 596154 CDS YP_004389564.1 330826261 10484785 3868017..3869039 1 NC_015422.1 KEGG: vap:Vapar_1266 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; lacI family transcriptional regulator 3869039 10484785 Alide2_3723 Alicycliphilus denitrificans K601 lacI family transcriptional regulator YP_004389564.1 3868017 D 596154 CDS YP_004389565.1 330826262 10484786 3869079..3870092 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: vap:Vapar_1265 extracellular solute-binding protein family 1; family 1 extracellular solute-binding protein 3870092 10484786 Alide2_3724 Alicycliphilus denitrificans K601 family 1 extracellular solute-binding protein YP_004389565.1 3869079 D 596154 CDS YP_004389566.1 330826263 10484787 3870089..3870898 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1264 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 3870898 10484787 Alide2_3725 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389566.1 3870089 D 596154 CDS YP_004389567.1 330826264 10484788 3870924..3871724 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1263 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 3871724 10484788 Alide2_3726 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389567.1 3870924 D 596154 CDS YP_004389568.1 330826265 10484789 3871714..3872775 1 NC_015422.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: vap:Vapar_1262 ABC transporter related; SMART: ATPase, AAA+ type, core; polyamine-transporting ATPase 3872775 10484789 Alide2_3727 Alicycliphilus denitrificans K601 polyamine-transporting ATPase YP_004389568.1 3871714 D 596154 CDS YP_004389569.1 330826266 10484790 3872772..3873611 1 NC_015422.1 PFAM: Metallo-dependent phosphatase; KEGG: vap:Vapar_1261 metallophosphoesterase; metallophosphoesterase 3873611 10484790 Alide2_3728 Alicycliphilus denitrificans K601 metallophosphoesterase YP_004389569.1 3872772 D 596154 CDS YP_004389570.1 330826267 10484791 3873634..3875301 1 NC_015422.1 KEGG: aav:Aave_3461 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi co-transporter II-related; PFAM: Na/Pi-cotransporter; PhoU; Na/Pi-cotransporter II-like protein 3875301 10484791 Alide2_3729 Alicycliphilus denitrificans K601 Na/Pi-cotransporter II-like protein YP_004389570.1 3873634 D 596154 CDS YP_004389571.1 330826268 10484792 complement(3875311..3876276) 1 NC_015422.1 PFAM: Bile acid:sodium symporter; KEGG: dia:Dtpsy_2738 hypothetical protein; bile acid:sodium symporter 3876276 10484792 Alide2_3730 Alicycliphilus denitrificans K601 bile acid:sodium symporter YP_004389571.1 3875311 R 596154 CDS YP_004389572.1 330826269 10484793 3876382..3877323 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_3178 LysR family transcriptional regulator; LysR family transcriptional regulator 3877323 10484793 Alide2_3731 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389572.1 3876382 D 596154 CDS YP_004389573.1 330826270 10484794 complement(3877277..3878095) 1 NC_015422.1 PFAM: NUDIX hydrolase domain; KEGG: ajs:Ajs_3404 NUDIX hydrolase; NUDIX hydrolase 3878095 10484794 Alide2_3732 Alicycliphilus denitrificans K601 NUDIX hydrolase YP_004389573.1 3877277 R 596154 CDS YP_004389574.1 330826271 10484795 complement(3878092..3879078) 1 NC_015422.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dia:Dtpsy_2740 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase; NADPH:quinone reductase 3879078 10484795 Alide2_3733 Alicycliphilus denitrificans K601 NADPH:quinone reductase YP_004389574.1 3878092 R 596154 CDS YP_004389575.1 330826272 10484796 3879184..3880086 1 NC_015422.1 KEGG: ajs:Ajs_3406 hypothetical protein; manually curated; PFAM: Drug/metabolite transporter; hypothetical protein 3880086 10484796 Alide2_3734 Alicycliphilus denitrificans K601 hypothetical protein YP_004389575.1 3879184 D 596154 CDS YP_004389576.1 330826273 10484797 complement(3880109..3882772) 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_2742 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 3882772 10484797 Alide2_3735 Alicycliphilus denitrificans K601 diguanylate cyclase/phosphodiesterase YP_004389576.1 3880109 R 596154 CDS YP_004389577.1 330826274 10484798 complement(3882769..3883836) 1 NC_015422.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ajs:Ajs_3408 TRAP dicarboxylate transporter-DctP subunit; family 7 extracellular solute-binding protein 3883836 10484798 Alide2_3736 Alicycliphilus denitrificans K601 family 7 extracellular solute-binding protein YP_004389577.1 3882769 R 596154 CDS YP_004389578.1 330826275 10484799 complement(3883836..3884666) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2744 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3884666 10484799 Alide2_3737 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004389578.1 3883836 R 596154 CDS YP_004389579.1 330826276 10484800 complement(3884868..3886379) 1 NC_015422.1 PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein; hypothetical protein 3886379 10484800 Alide2_3738 Alicycliphilus denitrificans K601 hypothetical protein YP_004389579.1 3884868 R 596154 CDS YP_004389580.1 330826277 10484801 complement(3886396..3886884) 1 NC_015422.1 KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468; hypothetical protein 3886884 10484801 Alide2_3739 Alicycliphilus denitrificans K601 hypothetical protein YP_004389580.1 3886396 R 596154 CDS YP_004389581.1 330826278 10484802 complement(3887015..3888781) 1 NC_015422.1 KEGG: dia:Dtpsy_2747 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core; type II secretion system protein E 3888781 10484802 Alide2_3740 Alicycliphilus denitrificans K601 type II secretion system protein E YP_004389581.1 3887015 R 596154 CDS YP_004389582.1 330826279 10484803 complement(3888786..3889547) 1 NC_015422.1 KEGG: dia:Dtpsy_2748 hypothetical protein; hypothetical protein 3889547 10484803 Alide2_3741 Alicycliphilus denitrificans K601 hypothetical protein YP_004389582.1 3888786 R 596154 CDS YP_004389583.1 330826280 10484804 complement(3889544..3890068) 1 NC_015422.1 KEGG: dia:Dtpsy_2749 hypothetical protein; hypothetical protein 3890068 10484804 Alide2_3742 Alicycliphilus denitrificans K601 hypothetical protein YP_004389583.1 3889544 R 596154 CDS YP_004389584.1 330826281 10484805 complement(3890143..3890988) 1 NC_015422.1 PFAM: Deoxyribonuclease, TatD-related; KEGG: ajs:Ajs_3416 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 3890988 10484805 Alide2_3743 Alicycliphilus denitrificans K601 TatD-related deoxyribonuclease YP_004389584.1 3890143 R 596154 CDS YP_004389585.1 330826282 10484806 complement(3890999..3891196) 1 NC_015422.1 PFAM: Protein of unknown function DUF2892; KEGG: dia:Dtpsy_2751 hypothetical protein; hypothetical protein 3891196 10484806 Alide2_3744 Alicycliphilus denitrificans K601 hypothetical protein YP_004389585.1 3890999 R 596154 CDS YP_004389586.1 330826283 10484807 complement(3891226..3891534) 1 NC_015422.1 KEGG: dia:Dtpsy_2752 transcriptional regulator, TrmB; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; ArsR family transcriptional regulator 3891534 10484807 Alide2_3745 Alicycliphilus denitrificans K601 ArsR family transcriptional regulator YP_004389586.1 3891226 R 596154 CDS YP_004389587.1 330826284 10484808 3891679..3892041 1 NC_015422.1 KEGG: dia:Dtpsy_2753 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase-like protein 3892041 10484808 Alide2_3746 Alicycliphilus denitrificans K601 alkylhydroperoxidase-like protein YP_004389587.1 3891679 D 596154 CDS YP_004389588.1 330826285 10484809 3892146..3893045 1 NC_015422.1 PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: aav:Aave_1064 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap 3893045 10484809 Alide2_3747 Alicycliphilus denitrificans K601 peptidase S1 and S6 chymotrypsin/Hap YP_004389588.1 3892146 D 596154 CDS YP_004389589.1 330826286 10484810 3893060..3894091 1 NC_015422.1 PFAM: ATPase, AAA-3; KEGG: aav:Aave_1063 ATPase; ATPase 3894091 10484810 Alide2_3748 Alicycliphilus denitrificans K601 ATPase YP_004389589.1 3893060 D 596154 CDS YP_004389590.1 330826287 10484811 3894084..3895052 1 NC_015422.1 PFAM: Domain of unknown function DUF58; KEGG: aav:Aave_1062 hypothetical protein; hypothetical protein 3895052 10484811 Alide2_3749 Alicycliphilus denitrificans K601 hypothetical protein YP_004389590.1 3894084 D 596154 CDS YP_004389591.1 330826288 10484812 3895085..3896131 1 NC_015422.1 KEGG: aav:Aave_1061 von Willebrand factor, type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; von Willebrand factor type A 3896131 10484812 Alide2_3750 Alicycliphilus denitrificans K601 von Willebrand factor type A YP_004389591.1 3895085 D 596154 CDS YP_004389592.1 330826289 10484813 complement(3896246..3898243) 1 NC_015422.1 TIGRFAM: Acetate-CoA ligase; KEGG: aav:Aave_1499 acetyl-coenzyme A synthetase; PFAM: AMP-dependent synthetase/ligase; acetate/CoA ligase 3898243 10484813 Alide2_3751 Alicycliphilus denitrificans K601 acetate/CoA ligase YP_004389592.1 3896246 R 596154 CDS YP_004389593.1 330826290 10484814 3898897..3900201 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: ajs:Ajs_1065 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core; glycine/betaine/L-proline ABC transporter ATPase 3900201 10484814 Alide2_3752 Alicycliphilus denitrificans K601 glycine/betaine/L-proline ABC transporter ATPase YP_004389593.1 3898897 D 596154 CDS YP_004389594.1 330826291 10484815 3900198..3901310 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0980 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 3901310 10484815 Alide2_3753 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389594.1 3900198 D 596154 CDS YP_004389595.1 330826292 10484816 3901386..3902396 1 NC_015422.1 PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: dia:Dtpsy_0979 glycine betaine transporter periplasmic subunit; glycine/betaine ABC transporter substrate-binding protein 3902396 10484816 Alide2_3754 Alicycliphilus denitrificans K601 glycine/betaine ABC transporter substrate-binding protein YP_004389595.1 3901386 D 596154 CDS YP_004389596.1 330826293 10484817 3902583..3903365 1 NC_015422.1 KEGG: dia:Dtpsy_0976 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator 3903365 10484817 Alide2_3755 Alicycliphilus denitrificans K601 Crp/Fnr family transcriptional regulator YP_004389596.1 3902583 D 596154 CDS YP_004389597.1 330826294 10484818 complement(3903366..3904751) 1 NC_015422.1 TIGRFAM: Fumarate hydratase, class II; KEGG: aav:Aave_1491 fumarate hydratase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; class II fumarate hydratase 3904751 10484818 Alide2_3756 Alicycliphilus denitrificans K601 class II fumarate hydratase YP_004389597.1 3903366 R 596154 CDS YP_004389598.1 330826295 10484819 3904920..3906479 1 NC_015422.1 KEGG: dac:Daci_2654 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; PFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 3906479 10484819 Alide2_3757 Alicycliphilus denitrificans K601 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha YP_004389598.1 3904920 D 596154 CDS YP_004389599.1 330826296 10484820 3906422..3906838 1 NC_015422.1 KEGG: mno:Mnod_4051 hypothetical protein; hypothetical protein 3906838 10484820 Alide2_3758 Alicycliphilus denitrificans K601 hypothetical protein YP_004389599.1 3906422 D 596154 CDS YP_004389600.1 330826297 10484821 complement(3906848..3908269) 1 NC_015422.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: dia:Dtpsy_0971 peptidase U62 modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 3908269 10484821 Alide2_3759 Alicycliphilus denitrificans K601 peptidase U62 modulator of DNA gyrase YP_004389600.1 3906848 R 596154 CDS YP_004389601.1 330826298 10484822 3908352..3909020 1 NC_015422.1 PFAM: Ribosome-associated, YjgA; KEGG: dia:Dtpsy_0970 protein of unknown function DUF615; hypothetical protein 3909020 10484822 Alide2_3760 Alicycliphilus denitrificans K601 hypothetical protein YP_004389601.1 3908352 D 596154 CDS YP_004389602.1 330826299 10484823 3909017..3909613 1 NC_015422.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; KEGG: ajs:Ajs_1051 molybdopterin adenylyltransferase; SMART: Molybdopterin binding; molybdenum cofactor synthesis domain-containing protein 3909613 10484823 Alide2_3761 Alicycliphilus denitrificans K601 molybdenum cofactor synthesis domain-containing protein YP_004389602.1 3909017 D 596154 CDS YP_004389603.1 330826300 10484824 3909706..3910803 1 NC_015422.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dia:Dtpsy_0967 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase; alcohol dehydrogenase 3910803 10484824 Alide2_3762 Alicycliphilus denitrificans K601 alcohol dehydrogenase YP_004389603.1 3909706 D 596154 CDS YP_004389604.1 330826301 10484825 complement(3910819..3911481) 1 NC_015422.1 PFAM: Nitroreductase-like; KEGG: dia:Dtpsy_0966 nitroreductase; nitroreductase 3911481 10484825 Alide2_3763 Alicycliphilus denitrificans K601 nitroreductase YP_004389604.1 3910819 R 596154 CDS YP_004389605.1 330826302 10484826 complement(3911548..3912339) 1 NC_015422.1 KEGG: xtr:100496826 serine acetyltransferase-like; TIGRFAM: Serine O-acetyltransferase; serine O-acetyltransferase 3912339 10484826 Alide2_3764 Alicycliphilus denitrificans K601 serine O-acetyltransferase YP_004389605.1 3911548 R 596154 CDS YP_004389606.1 330826303 10484827 complement(3912377..3913189) 1 NC_015422.1 KEGG: ajs:Ajs_1046 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU; TrmH family RNA methyltransferase 3913189 10484827 Alide2_3765 Alicycliphilus denitrificans K601 TrmH family RNA methyltransferase YP_004389606.1 3912377 R 596154 CDS YP_004389607.1 330826304 10484828 3913319..3914272 1 NC_015422.1 KEGG: dia:Dtpsy_0963 inositol-phosphate phosphatase; PFAM: Inositol monophosphatase; inositol-phosphate phosphatase 3914272 10484828 Alide2_3766 Alicycliphilus denitrificans K601 inositol-phosphate phosphatase YP_004389607.1 3913319 D 596154 CDS YP_004389608.1 330826305 10484829 3914614..3915228 1 NC_015422.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ctt:CtCNB1_3517 tripartite ATP-independent periplasmic protein; TRAP dicarboxylate transporter subunit DctQ 3915228 10484829 Alide2_3767 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctQ YP_004389608.1 3914614 D 596154 CDS YP_004389609.1 330826306 10484830 3915247..3917073 1 NC_015422.1 KEGG: dia:Dtpsy_0958 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 3917073 10484830 Alide2_3768 Alicycliphilus denitrificans K601 TRAP dicarboxylate transporter subunit DctM YP_004389609.1 3915247 D 596154 CDS YP_004389610.1 330826307 10484831 3917208..3921905 1 NC_015422.1 KEGG: gdi:GDI_2676 putative ATP-dependent helicase Lhr; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase 3921905 10484831 Alide2_3769 Alicycliphilus denitrificans K601 DEAD/DEAH box helicase YP_004389610.1 3917208 D 596154 CDS YP_004389611.1 330826308 10484832 complement(3921985..3923067) 1 NC_015422.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ctt:CtCNB1_3520 twin-arginine translocation pathway signal; family 7 extracellular solute-binding protein 3923067 10484832 Alide2_3770 Alicycliphilus denitrificans K601 family 7 extracellular solute-binding protein YP_004389611.1 3921985 R 596154 CDS YP_004389612.1 330826309 10484833 complement(3923195..3925087) 1 NC_015422.1 SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Deoxyxylulose-5-phosphate synthase; KEGG: dia:Dtpsy_0956 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; Dehydrogenase, E1 component; deoxyxylulose-5-phosphate synthase 3925087 10484833 Alide2_3771 Alicycliphilus denitrificans K601 deoxyxylulose-5-phosphate synthase YP_004389612.1 3923195 R 596154 CDS YP_004389613.1 330826310 10484834 complement(3925162..3926055) 1 NC_015422.1 PFAM: Polyprenyl synthetase; KEGG: dia:Dtpsy_0955 polyprenyl synthetase; polyprenyl synthetase 3926055 10484834 Alide2_3772 Alicycliphilus denitrificans K601 polyprenyl synthetase YP_004389613.1 3925162 R 596154 CDS YP_004389614.1 330826311 10484835 complement(3926055..3926297) 1 NC_015422.1 KEGG: ajs:Ajs_1036 exodeoxyribonuclease VII, small subunit; TIGRFAM: Exonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 3926297 10484835 Alide2_3773 Alicycliphilus denitrificans K601 exodeoxyribonuclease VII small subunit YP_004389614.1 3926055 R 596154 CDS YP_004389615.1 330826312 10484836 3926573..3927712 1 NC_015422.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain-containing protein; Rieske (2Fe-2S) domain-containing protein 3927712 10484836 Alide2_3774 Alicycliphilus denitrificans K601 Rieske (2Fe-2S) domain-containing protein YP_004389615.1 3926573 D 596154 CDS YP_004389616.1 330826313 10484837 3927806..3928717 1 NC_015422.1 KEGG: dia:Dtpsy_0952 putative transmembrane protein; transmembrane protein 3928717 10484837 Alide2_3775 Alicycliphilus denitrificans K601 transmembrane protein YP_004389616.1 3927806 D 596154 CDS YP_004389617.1 330826314 10484838 3928771..3929670 1 NC_015422.1 PFAM: Rhodanese-like; KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase; SMART: Rhodanese-like; 3-mercaptopyruvate sulfurtransferase 3929670 10484838 Alide2_3776 Alicycliphilus denitrificans K601 3-mercaptopyruvate sulfurtransferase YP_004389617.1 3928771 D 596154 CDS YP_004389618.1 330826315 10484839 complement(3929876..3931312) 1 NC_015422.1 PFAM: Aldehyde dehydrogenase domain; KEGG: dia:Dtpsy_0944 aldehyde dehydrogenase; aldehyde dehydrogenase 3931312 10484839 Alide2_3777 Alicycliphilus denitrificans K601 aldehyde dehydrogenase YP_004389618.1 3929876 R 596154 CDS YP_004389619.1 330826316 10484840 complement(3931550..3933940) 1 NC_015422.1 TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: dia:Dtpsy_0933 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like; DNA internalization-related competence protein ComEC/Rec2 3933940 10484840 Alide2_3778 Alicycliphilus denitrificans K601 DNA internalization-related competence protein ComEC/Rec2 YP_004389619.1 3931550 R 596154 CDS YP_004389620.1 330826317 10484841 3934046..3934504 1 NC_015422.1 PFAM: Endoribonuclease L-PSP; KEGG: ajs:Ajs_1018 endoribonuclease L-PSP; endoribonuclease L-PSP 3934504 10484841 Alide2_3779 Alicycliphilus denitrificans K601 endoribonuclease L-PSP YP_004389620.1 3934046 D 596154 CDS YP_004389621.1 330826318 10484842 complement(3934612..3936954) 1 NC_015422.1 SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; KEGG: ajs:Ajs_1016 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; DNA topoisomerase IV subunit A 3936954 10484842 Alide2_3780 Alicycliphilus denitrificans K601 DNA topoisomerase IV subunit A YP_004389621.1 3934612 R 596154 CDS YP_004389622.1 330826319 10484843 complement(3937010..3938986) 1 NC_015422.1 PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: dia:Dtpsy_0928 DNA topoisomerase IV subunit B; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; DNA topoisomerase 3938986 10484843 Alide2_3781 Alicycliphilus denitrificans K601 DNA topoisomerase YP_004389622.1 3937010 R 596154 CDS YP_004389623.1 330826320 10484844 3939082..3940299 1 NC_015422.1 KEGG: dia:Dtpsy_0927 major facilitator superfamily MFS_1; manually curated; PFAM: Major facilitator superfamily MFS-1; major facilitator superfamily protein 3940299 10484844 Alide2_3782 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004389623.1 3939082 D 596154 CDS YP_004389624.1 330826321 10484845 3940304..3940432 1 NC_015422.1 KEGG: ajs:Ajs_1012 hypothetical protein; hypothetical protein 3940432 10484845 Alide2_3783 Alicycliphilus denitrificans K601 hypothetical protein YP_004389624.1 3940304 D 596154 CDS YP_004389625.1 330826322 10484846 3940432..3940962 1 NC_015422.1 PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_0925 methyltransferase type 12; type 11 methyltransferase 3940962 10484846 Alide2_3784 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004389625.1 3940432 D 596154 CDS YP_004389626.1 330826323 10484847 3940971..3941867 1 NC_015422.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: dia:Dtpsy_0924 dihydrodipicolinate synthase; dihydrodipicolinate synthase 3941867 10484847 Alide2_3785 Alicycliphilus denitrificans K601 dihydrodipicolinate synthase YP_004389626.1 3940971 D 596154 CDS YP_004389627.1 330826324 10484848 3941902..3942990 1 NC_015422.1 PFAM: Lipoprotein, NlpB; KEGG: ajs:Ajs_1009 NlpB/DapX family lipoprotein; NlpBDapX family lipoprotein 3942990 10484848 Alide2_3786 Alicycliphilus denitrificans K601 NlpBDapX family lipoprotein YP_004389627.1 3941902 D 596154 CDS YP_004389628.1 330826325 10484849 complement(3943556..3944053) 1 NC_015422.1 KEGG: dia:Dtpsy_0921 hypothetical protein; hypothetical protein 3944053 10484849 Alide2_3787 Alicycliphilus denitrificans K601 hypothetical protein YP_004389628.1 3943556 R 596154 CDS YP_004389629.1 330826326 10484850 complement(3944070..3945194) 1 NC_015422.1 KEGG: dia:Dtpsy_0920 cupin 4 family protein; PFAM: Cupin, JmjC-type; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; hypothetical protein 3945194 10484850 Alide2_3788 Alicycliphilus denitrificans K601 hypothetical protein YP_004389629.1 3944070 R 596154 CDS YP_004389630.1 330826327 10484851 3945248..3945772 1 NC_015422.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dia:Dtpsy_0919 fkbp-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 3945772 10484851 Alide2_3789 Alicycliphilus denitrificans K601 FKBP-type peptidylprolyl isomerase YP_004389630.1 3945248 D 596154 CDS YP_004389631.1 330826328 10484852 complement(3945779..3946225) 1 NC_015422.1 TIGRFAM: DeoxyUTP pyrophosphatase; KEGG: xtr:100496823 deoxyuridine 5'-triphosphate nucleotidohydrolase-like; PFAM: DeoxyUTP pyrophosphatase domain; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 3946225 10484852 Alide2_3790 Alicycliphilus denitrificans K601 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_004389631.1 3945779 R 596154 CDS YP_004389632.1 330826329 10484853 complement(3946294..3946695) 1 NC_015422.1 hypothetical protein 3946695 10484853 Alide2_3791 Alicycliphilus denitrificans K601 hypothetical protein YP_004389632.1 3946294 R 596154 CDS YP_004389633.1 330826330 10484854 complement(3946692..3947918) 1 NC_015422.1 TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: dia:Dtpsy_0916 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3947918 10484854 Alide2_3792 Alicycliphilus denitrificans K601 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_004389633.1 3946692 R 596154 CDS YP_004389634.1 330826331 10484855 3947994..3949643 1 NC_015422.1 PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: dia:Dtpsy_0915 CTP synthetase; CTP synthase 3949643 10484855 Alide2_3793 Alicycliphilus denitrificans K601 CTP synthase YP_004389634.1 3947994 D 596154 CDS YP_004389635.1 330826332 10484856 3949649..3950506 1 NC_015422.1 TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; KEGG: dac:Daci_5106 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase 3950506 10484856 Alide2_3794 Alicycliphilus denitrificans K601 2-dehydro-3-deoxyphosphooctonate aldolase YP_004389635.1 3949649 D 596154 CDS YP_004389636.1 330826333 10484857 3950509..3950799 1 NC_015422.1 PFAM: Protein of unknown function DUF1330; KEGG: dac:Daci_5107 hypothetical protein; hypothetical protein 3950799 10484857 Alide2_3795 Alicycliphilus denitrificans K601 hypothetical protein YP_004389636.1 3950509 D 596154 CDS YP_004389637.1 330826334 10484858 3950982..3952268 1 NC_015422.1 TIGRFAM: Enolase; KEGG: xtr:100496359 enolase-like; PFAM: Enolase, C-terminal; Enolase, N-terminal; enolase 3952268 10484858 Alide2_3796 Alicycliphilus denitrificans K601 enolase YP_004389637.1 3950982 D 596154 CDS YP_004389638.1 330826335 10484859 3952296..3952583 1 NC_015422.1 PFAM: Septum formation initiator; KEGG: dia:Dtpsy_0911 septum formation initiator; septum formation initiator 3952583 10484859 Alide2_3797 Alicycliphilus denitrificans K601 septum formation initiator YP_004389638.1 3952296 D 596154 CDS YP_004389639.1 330826336 10484860 complement(3952653..3953432) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: rfr:Rfer_1521 ABC transporter related; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase 3953432 10484860 Alide2_3798 Alicycliphilus denitrificans K601 sulfate-transporting ATPase YP_004389639.1 3952653 R 596154 CDS YP_004389640.1 330826337 10484861 complement(3953443..3954156) 1 NC_015422.1 KEGG: rfr:Rfer_1523 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease 3954156 10484861 Alide2_3799 Alicycliphilus denitrificans K601 polar amino acid ABC transporter permease YP_004389640.1 3953443 R 596154 CDS YP_004389641.1 330826338 10484862 complement(3954153..3954842) 1 NC_015422.1 KEGG: rfr:Rfer_1524 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease 3954842 10484862 Alide2_3800 Alicycliphilus denitrificans K601 polar amino acid ABC transporter permease YP_004389641.1 3954153 R 596154 CDS YP_004389642.1 330826339 10484863 complement(3954873..3955634) 1 NC_015422.1 KEGG: xtr:100498246 histidine-binding periplasmic protein-like; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 3955634 10484863 Alide2_3801 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004389642.1 3954873 R 596154 CDS YP_004389643.1 330826340 10484864 complement(3955699..3956685) 1 NC_015422.1 PFAM: Heat shock protein Hsp33 protein; KEGG: ajs:Ajs_0994 HSP33 protein; Hsp33 protein 3956685 10484864 Alide2_3802 Alicycliphilus denitrificans K601 Hsp33 protein YP_004389643.1 3955699 R 596154 CDS YP_004389644.1 330826341 10484865 complement(3956695..3957219) 1 NC_015422.1 KEGG: ajs:Ajs_0993 transferase hexapeptide protein; transferase 3957219 10484865 Alide2_3803 Alicycliphilus denitrificans K601 transferase YP_004389644.1 3956695 R 596154 CDS YP_004389645.1 330826342 10484866 3957269..3958075 1 NC_015422.1 KEGG: dia:Dtpsy_0907 protein of unknown function DUF455; manually curated; PFAM: Protein of unknown function DUF455; hypothetical protein 3958075 10484866 Alide2_3804 Alicycliphilus denitrificans K601 hypothetical protein YP_004389645.1 3957269 D 596154 CDS YP_004389646.1 330826343 10484867 3958164..3959432 1 NC_015422.1 KEGG: dia:Dtpsy_0906 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, EAL domain; diguanylate phosphodiesterase metal dependent hydrolase domain-containing protein 3959432 10484867 Alide2_3805 Alicycliphilus denitrificans K601 diguanylate phosphodiesterase metal dependent hydrolase domain-containing protein YP_004389646.1 3958164 D 596154 CDS YP_004389647.1 330826344 10484868 3959470..3960756 1 NC_015422.1 KEGG: dia:Dtpsy_0905 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, EAL domain; diguanylate phosphodiesterase metal dependent hydrolase domain-containing protein 3960756 10484868 Alide2_3806 Alicycliphilus denitrificans K601 diguanylate phosphodiesterase metal dependent hydrolase domain-containing protein YP_004389647.1 3959470 D 596154 CDS YP_004389648.1 330826345 10484869 complement(3960776..3961759) 1 NC_015422.1 KEGG: ajs:Ajs_0989 hypothetical protein; hypothetical protein 3961759 10484869 Alide2_3807 Alicycliphilus denitrificans K601 hypothetical protein YP_004389648.1 3960776 R 596154 CDS YP_004389649.1 330826346 10484870 3962031..3963092 1 NC_015422.1 KEGG: ctt:CtCNB1_2005 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS; PFAM: PAS fold-3; PAS sensor protein 3963092 10484870 Alide2_3808 Alicycliphilus denitrificans K601 PAS sensor protein YP_004389649.1 3962031 D 596154 CDS YP_004389650.1 330826347 10484871 3963496..3964194 1 NC_015422.1 PFAM: Helix-turn-helix, HxlR type; KEGG: mlo:mlr1855 hypothetical protein; HxlR family transcriptional regulator 3964194 10484871 Alide2_3809 Alicycliphilus denitrificans K601 HxlR family transcriptional regulator YP_004389650.1 3963496 D 596154 CDS YP_004389651.1 330826348 10484872 complement(3964197..3964745) 1 NC_015422.1 TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: dia:Dtpsy_2968 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 3964745 10484872 Alide2_3810 Alicycliphilus denitrificans K601 crossover junction endodeoxyribonuclease RuvC YP_004389651.1 3964197 R 596154 CDS YP_004389652.1 330826349 10484873 3965098..3965364 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911; transposase IS3/IS911 family protein 3965364 10484873 Alide2_3811 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389652.1 3965098 D 596154 CDS YP_004389653.1 330826350 10484874 3965382..3966194 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: ajs:Ajs_3784 integrase catalytic subunit; integrase catalytic subunit 3966194 10484874 Alide2_3812 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004389653.1 3965382 D 596154 CDS YP_004389654.1 330826351 10484875 complement(3966348..3966674) 1 NC_015422.1 KEGG: rso:RSc1775 hemagglutinin-related protein; hemagglutinin-like protein 3966674 10484875 Alide2_3813 Alicycliphilus denitrificans K601 hemagglutinin-like protein YP_004389654.1 3966348 R 596154 CDS YP_004389655.1 330826352 10484876 complement(3966698..3967414) 1 NC_015422.1 TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; KEGG: ajs:Ajs_3657 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51; monofunctional biosynthetic peptidoglycan transglycosylase 3967414 10484876 Alide2_3814 Alicycliphilus denitrificans K601 monofunctional biosynthetic peptidoglycan transglycosylase YP_004389655.1 3966698 R 596154 CDS YP_004389656.1 330826353 10484877 complement(3967428..3968276) 1 NC_015422.1 KEGG: ajs:Ajs_3656 shikimate 5-dehydrogenase; TIGRFAM: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; shikimate 5-dehydrogenase 3968276 10484877 Alide2_3815 Alicycliphilus denitrificans K601 shikimate 5-dehydrogenase YP_004389656.1 3967428 R 596154 CDS YP_004389657.1 330826354 10484878 complement(3968283..3969143) 1 NC_015422.1 TIGRFAM: TonB, C-terminal; KEGG: ajs:Ajs_3655 TonB family protein; TonB family protein 3969143 10484878 Alide2_3816 Alicycliphilus denitrificans K601 TonB family protein YP_004389657.1 3968283 R 596154 CDS YP_004389658.1 330826355 10484879 complement(3969153..3971231) 1 NC_015422.1 KEGG: ajs:Ajs_3654 ribonuclease II; PFAM: Ribonuclease II/R; SMART: Ribonuclease II/R; ribonuclease II 3971231 10484879 Alide2_3817 Alicycliphilus denitrificans K601 ribonuclease II YP_004389658.1 3969153 R 596154 CDS YP_004389659.1 330826356 10484880 3971355..3972098 1 NC_015422.1 KEGG: dia:Dtpsy_2963 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 3972098 10484880 Alide2_3818 Alicycliphilus denitrificans K601 ECF subfamily RNA polymerase sigma-24 subunit YP_004389659.1 3971355 D 596154 CDS YP_004389660.1 330826357 10484881 3972187..3972768 1 NC_015422.1 KEGG: ajs:Ajs_3652 hypothetical protein; hypothetical protein 3972768 10484881 Alide2_3819 Alicycliphilus denitrificans K601 hypothetical protein YP_004389660.1 3972187 D 596154 CDS YP_004389661.1 330826358 10484882 3972765..3973178 1 NC_015422.1 PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2961 cytochrome c class I; cytochrome c class I 3973178 10484882 Alide2_3820 Alicycliphilus denitrificans K601 cytochrome c class I YP_004389661.1 3972765 D 596154 CDS YP_004389662.1 330826359 10484883 3973328..3974887 1 NC_015422.1 PFAM: O-antigen ligase-related; KEGG: dia:Dtpsy_2960 O-antigen polymerase; O-antigen polymerase 3974887 10484883 Alide2_3821 Alicycliphilus denitrificans K601 O-antigen polymerase YP_004389662.1 3973328 D 596154 CDS YP_004389663.1 330826360 10484884 complement(3974990..3975577) 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0227/Esterase YqiA; KEGG: ajs:Ajs_3649 hypothetical protein; hypothetical protein 3975577 10484884 Alide2_3822 Alicycliphilus denitrificans K601 hypothetical protein YP_004389663.1 3974990 R 596154 CDS YP_004389664.1 330826361 10484885 3975613..3976794 1 NC_015422.1 KEGG: dia:Dtpsy_2957 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein; rod shape-determining protein RodA 3976794 10484885 Alide2_3823 Alicycliphilus denitrificans K601 rod shape-determining protein RodA YP_004389664.1 3975613 D 596154 CDS YP_004389665.1 330826362 10484886 3976833..3978293 1 NC_015422.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: dia:Dtpsy_2956 peptidase U62 modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 3978293 10484886 Alide2_3824 Alicycliphilus denitrificans K601 peptidase U62 modulator of DNA gyrase YP_004389665.1 3976833 D 596154 CDS YP_004389666.1 330826363 10484887 3978535..3979653 1 NC_015422.1 TIGRFAM: DHAP synthase, class 1; KEGG: dia:Dtpsy_2954 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 3979653 10484887 Alide2_3825 Alicycliphilus denitrificans K601 phospho-2-dehydro-3-deoxyheptonate aldolase YP_004389666.1 3978535 D 596154 CDS YP_004389667.1 330826364 10484888 3979739..3980050 1 NC_015422.1 KEGG: dia:Dtpsy_2953 hypothetical protein; hypothetical protein 3980050 10484888 Alide2_3826 Alicycliphilus denitrificans K601 hypothetical protein YP_004389667.1 3979739 D 596154 CDS YP_004389668.1 330826365 10484889 complement(3980098..3981540) 1 NC_015422.1 TIGRFAM: Murein peptide ligase; KEGG: ajs:Ajs_3642 UDP-N-acetylmuramate; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramate--L-alanine ligase 3981540 10484889 Alide2_3827 Alicycliphilus denitrificans K601 UDP-N-acetylmuramate--L-alanine ligase YP_004389668.1 3980098 R 596154 CDS YP_004389669.1 330826366 10484890 3981584..3982219 1 NC_015422.1 KEGG: ajs:Ajs_3641 hypothetical protein; hypothetical protein 3982219 10484890 Alide2_3828 Alicycliphilus denitrificans K601 hypothetical protein YP_004389669.1 3981584 D 596154 CDS YP_004389670.1 330826367 10484891 3982216..3982791 1 NC_015422.1 PFAM: Redoxin; KEGG: dia:Dtpsy_2950 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin domain-containing protein 3982791 10484891 Alide2_3829 Alicycliphilus denitrificans K601 redoxin domain-containing protein YP_004389670.1 3982216 D 596154 CDS YP_004389671.1 330826368 10484892 3982902..3983360 1 NC_015422.1 KEGG: dia:Dtpsy_2949 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3983360 10484892 Alide2_3830 Alicycliphilus denitrificans K601 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_004389671.1 3982902 D 596154 CDS YP_004389672.1 330826369 10484893 3983376..3984725 1 NC_015422.1 SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: ajs:Ajs_3638 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; acetyl-CoA carboxylase, biotin carboxylase 3984725 10484893 Alide2_3831 Alicycliphilus denitrificans K601 acetyl-CoA carboxylase, biotin carboxylase YP_004389672.1 3983376 D 596154 CDS YP_004389673.1 330826370 10484894 3984818..3985714 1 NC_015422.1 TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: ajs:Ajs_3637 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase, PrmA; 50S ribosomal protein L11 methyltransferase 3985714 10484894 Alide2_3832 Alicycliphilus denitrificans K601 50S ribosomal protein L11 methyltransferase YP_004389673.1 3984818 D 596154 CDS YP_004389674.1 330826371 10484895 3985768..3986922 1 NC_015422.1 KEGG: dia:Dtpsy_2946 MJ0042 family finger-like protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426; hypothetical protein 3986922 10484895 Alide2_3833 Alicycliphilus denitrificans K601 hypothetical protein YP_004389674.1 3985768 D 596154 CDS YP_004389675.1 330826372 10484896 3986957..3987859 1 NC_015422.1 KEGG: dia:Dtpsy_2945 PfkB domain protein; PFAM: Carbohydrate/purine kinase; adenosine kinase 3987859 10484896 Alide2_3834 Alicycliphilus denitrificans K601 adenosine kinase YP_004389675.1 3986957 D 596154 CDS YP_004389676.1 330826373 10484897 complement(3987942..3988490) 1 NC_015422.1 KEGG: dia:Dtpsy_2944 histone protein; histone protein 3988490 10484897 Alide2_3835 Alicycliphilus denitrificans K601 histone protein YP_004389676.1 3987942 R 596154 CDS YP_004389677.1 330826374 10484898 complement(3988670..3989860) 1 NC_015422.1 KEGG: dia:Dtpsy_2943 ribonucleotide-diphosphate reductase subunit beta; PFAM: Ribonucleotide reductase; ribonucleoside-diphosphate reductase 3989860 10484898 Alide2_3836 Alicycliphilus denitrificans K601 ribonucleoside-diphosphate reductase YP_004389677.1 3988670 R 596154 CDS YP_004389678.1 330826375 10484899 complement(3989999..3992911) 1 NC_015422.1 KEGG: ajs:Ajs_3632 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone; ribonucleoside-diphosphate reductase subunit alpha 3992911 10484899 Alide2_3837 Alicycliphilus denitrificans K601 ribonucleoside-diphosphate reductase subunit alpha YP_004389678.1 3989999 R 596154 CDS YP_004389679.1 330826376 10484900 complement(3993196..3993777) 1 NC_015422.1 KEGG: dia:Dtpsy_2941 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 3993777 10484900 Alide2_3838 Alicycliphilus denitrificans K601 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_004389679.1 3993196 R 596154 CDS YP_004389680.1 330826377 10484901 complement(3993761..3995251) 1 NC_015422.1 KEGG: dia:Dtpsy_2940 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; Fis family two component sigma54 specific transcriptional regulator 3995251 10484901 Alide2_3839 Alicycliphilus denitrificans K601 Fis family two component sigma54 specific transcriptional regulator YP_004389680.1 3993761 R 596154 CDS YP_004389681.1 330826378 10484902 complement(3995268..3996971) 1 NC_015422.1 KEGG: dia:Dtpsy_2939 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 3996971 10484902 Alide2_3840 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004389681.1 3995268 R 596154 CDS YP_004389682.1 330826379 10484903 complement(3996984..3997211) 1 NC_015422.1 KEGG: dia:Dtpsy_2938 hypothetical protein; hypothetical protein 3997211 10484903 Alide2_3841 Alicycliphilus denitrificans K601 hypothetical protein YP_004389682.1 3996984 R 596154 CDS YP_004389683.1 330826380 10484904 complement(3997208..3998005) 1 NC_015422.1 PFAM: Cytochrome c assembly protein; KEGG: dia:Dtpsy_2937 cytochrome c assembly protein; cytochrome c assembly protein 3998005 10484904 Alide2_3842 Alicycliphilus denitrificans K601 cytochrome c assembly protein YP_004389683.1 3997208 R 596154 CDS YP_004389684.1 330826381 10484905 3998095..3999474 1 NC_015422.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: ajs:Ajs_3626 signal recognition particle subunit FFH/SRP54 (SRP54); SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core; signal recognition particle protein 3999474 10484905 Alide2_3843 Alicycliphilus denitrificans K601 signal recognition particle protein YP_004389684.1 3998095 D 596154 CDS YP_004389685.1 330826382 10484906 complement(3999519..4000868) 1 NC_015422.1 TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; PFAM: Radical SAM; Methylthiotransferase, N-terminal; Deoxyribonuclease/rho motif-related TRAM; KEGG: dia:Dtpsy_2935 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 4000868 10484906 Alide2_3844 Alicycliphilus denitrificans K601 MiaB family RNA modification protein YP_004389685.1 3999519 R 596154 CDS YP_004389686.1 330826383 10484907 complement(4000936..4001337) 1 NC_015422.1 KEGG: aav:Aave_0876 hypothetical protein; hypothetical protein 4001337 10484907 Alide2_3845 Alicycliphilus denitrificans K601 hypothetical protein YP_004389686.1 4000936 R 596154 CDS YP_004389687.1 330826384 10484910 complement(4002357..4004138) 1 NC_015422.1 PFAM: Peptidase M61; KEGG: ajs:Ajs_3622 peptidase M61 domain-containing protein; peptidase M61 domain-containing protein 4004138 10484910 Alide2_3847 Alicycliphilus denitrificans K601 peptidase M61 domain-containing protein YP_004389687.1 4002357 R 596154 CDS YP_004389688.1 330826385 10484911 complement(4004283..4005002) 1 NC_015422.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_3621 thiol:disulfide interchange protein DsbC; disulfide bond isomerase DsbC/G 4005002 10484911 Alide2_3848 Alicycliphilus denitrificans K601 disulfide bond isomerase DsbC/G YP_004389688.1 4004283 R 596154 CDS YP_004389689.1 330826386 10484912 complement(4005046..4006176) 1 NC_015422.1 KEGG: ajs:Ajs_3620 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding; FAD dependent oxidoreductase; Ubiquinone biosynthesis hydroxylase 4006176 10484912 Alide2_3849 Alicycliphilus denitrificans K601 Ubiquinone biosynthesis hydroxylase YP_004389689.1 4005046 R 596154 CDS YP_004389690.1 330826387 10484913 4006318..4007412 1 NC_015422.1 KEGG: dia:Dtpsy_2928 GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related; GTP-binding protein YchF 4007412 10484913 Alide2_3850 Alicycliphilus denitrificans K601 GTP-binding protein YchF YP_004389690.1 4006318 D 596154 CDS YP_004389691.1 330826388 10484914 4007631..4007843 1 NC_015422.1 KEGG: pap:PSPA7_5324 integrase; integrase 4007843 10484914 Alide2_3851 Alicycliphilus denitrificans K601 integrase YP_004389691.1 4007631 D 596154 CDS YP_004389692.1 330826389 10484915 4007909..4008175 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4008175 10484915 Alide2_3852 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389692.1 4007909 D 596154 CDS YP_004389693.1 330826390 10484916 4008208..4008450 1 NC_015422.1 KEGG: pna:Pnap_4649 IS1477 transposase; hypothetical protein 4008450 10484916 Alide2_3853 Alicycliphilus denitrificans K601 hypothetical protein YP_004389693.1 4008208 D 596154 CDS YP_004389694.1 330826391 10484917 4008505..4008933 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein 4008933 10484917 Alide2_3854 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389694.1 4008505 D 596154 CDS YP_004389695.1 330826392 10484918 4008930..4009262 1 NC_015422.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 4009262 10484918 Alide2_3855 Alicycliphilus denitrificans K601 IS66 Orf2 family protein YP_004389695.1 4008930 D 596154 CDS YP_004389696.1 330826393 10484919 4009345..4010859 1 NC_015422.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66 4010859 10484919 Alide2_3856 Alicycliphilus denitrificans K601 transposase IS66 YP_004389696.1 4009345 D 596154 CDS YP_004389697.1 330826394 10484921 complement(4011492..4013018) 1 NC_015422.1 KEGG: bvi:Bcep1808_2622 integrase catalytic subunit; integrase catalytic subunit 4013018 10484921 Alide2_3858 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004389697.1 4011492 R 596154 CDS YP_004389698.1 330826395 10484923 4013366..4015165 1 NC_015422.1 KEGG: dar:Daro_1555 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 4015165 10484923 Alide2_3860 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004389698.1 4013366 D 596154 CDS YP_004389699.1 330826396 10484924 complement(4015456..4016091) 1 NC_015422.1 PFAM: DSBA-like thioredoxin domain; KEGG: bpl:BURPS1106A_A3104 thioredoxin domain-containing protein; DSBA oxidoreductase 4016091 10484924 Alide2_3861 Alicycliphilus denitrificans K601 DSBA oxidoreductase YP_004389699.1 4015456 R 596154 CDS YP_004389700.1 330826397 10484925 complement(4016088..4017341) 1 NC_015422.1 KEGG: app:CAP2UW1_0749 drug resistance transporter, Bcr/CflA subfamily; manually curated; PFAM: Major facilitator superfamily MFS-1; major facilitator superfamily protein 4017341 10484925 Alide2_3862 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004389700.1 4016088 R 596154 CDS YP_004389701.1 330826398 10484926 complement(4017341..4017895) 1 NC_015422.1 PFAM: Protein of unknown function DUF1234; KEGG: bge:BC1002_3447 protein of unknown function DUF1234; hypothetical protein 4017895 10484926 Alide2_3863 Alicycliphilus denitrificans K601 hypothetical protein YP_004389701.1 4017341 R 596154 CDS YP_004389702.1 330826399 10484927 complement(4017920..4019224) 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bph:Bphy_7178 major facilitator transporter; major facilitator superfamily protein 4019224 10484927 Alide2_3864 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004389702.1 4017920 R 596154 CDS YP_004389703.1 330826400 10484928 complement(4019329..4020390) 1 NC_015422.1 PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: reu:Reut_A0020 hypothetical protein; hypothetical protein 4020390 10484928 Alide2_3865 Alicycliphilus denitrificans K601 hypothetical protein YP_004389703.1 4019329 R 596154 CDS YP_004389704.1 330826401 10484929 complement(4020473..4021330) 1 NC_015422.1 KEGG: bph:Bphy_7176 taurine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA; taurine dioxygenase 4021330 10484929 Alide2_3866 Alicycliphilus denitrificans K601 taurine dioxygenase YP_004389704.1 4020473 R 596154 CDS YP_004389705.1 330826402 10484930 complement(4021344..4022324) 1 NC_015422.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: reu:Reut_A2148 zinc-containing alcohol dehydrogenase superfamily protein; SMART: Polyketide synthase, enoylreductase; NADPH:quinone reductase 4022324 10484930 Alide2_3867 Alicycliphilus denitrificans K601 NADPH:quinone reductase YP_004389705.1 4021344 R 596154 CDS YP_004389706.1 330826403 10484931 complement(4022351..4023370) 1 NC_015422.1 PFAM: UspA; Haemerythrin/HHE cation-binding motif; KEGG: reu:Reut_B3843 hypothetical protein; UspA domain-containing protein 4023370 10484931 Alide2_3868 Alicycliphilus denitrificans K601 UspA domain-containing protein YP_004389706.1 4022351 R 596154 CDS YP_004389707.1 330826404 10484932 complement(4023407..4023715) 1 NC_015422.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bge:BC1002_3448 Rieske (2Fe-2S) iron-sulfur domain protein; Rieske (2Fe-2S) domain-containing protein 4023715 10484932 Alide2_3869 Alicycliphilus denitrificans K601 Rieske (2Fe-2S) domain-containing protein YP_004389707.1 4023407 R 596154 CDS YP_004389708.1 330826405 10484933 4023876..4026611 1 NC_015422.1 KEGG: reu:Reut_B3844 regulatory protein, LuxR; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; LuxR family ATP-dependent transcriptional regulator 4026611 10484933 Alide2_3870 Alicycliphilus denitrificans K601 LuxR family ATP-dependent transcriptional regulator YP_004389708.1 4023876 D 596154 CDS YP_004389709.1 330826406 10484934 4026834..4028570 1 NC_015422.1 PFAM: Protein of unknown function DUF1302; KEGG: lch:Lcho_2162 hypothetical protein; hypothetical protein 4028570 10484934 Alide2_3871 Alicycliphilus denitrificans K601 hypothetical protein YP_004389709.1 4026834 D 596154 CDS YP_004389710.1 330826407 10484935 4028582..4029931 1 NC_015422.1 PFAM: Protein of unknown function DUF1329; KEGG: lch:Lcho_2163 hypothetical protein; hypothetical protein 4029931 10484935 Alide2_3872 Alicycliphilus denitrificans K601 hypothetical protein YP_004389710.1 4028582 D 596154 CDS YP_004389711.1 330826408 10484936 4030158..4031231 1 NC_015422.1 KEGG: psa:PST_0617 glycosyl hydrolase; glycosyl hydrolase 4031231 10484936 Alide2_3873 Alicycliphilus denitrificans K601 glycosyl hydrolase YP_004389711.1 4030158 D 596154 CDS YP_004389712.1 330826409 10484937 4031257..4033737 1 NC_015422.1 KEGG: psa:PST_0618 transporter, putative; transporter 4033737 10484937 Alide2_3874 Alicycliphilus denitrificans K601 transporter YP_004389712.1 4031257 D 596154 CDS YP_004389713.1 330826410 10484938 4033783..4034793 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0324, prokaryote; KEGG: dac:Daci_1990 hypothetical protein; hypothetical protein 4034793 10484938 Alide2_3875 Alicycliphilus denitrificans K601 hypothetical protein YP_004389713.1 4033783 D 596154 CDS YP_004389714.1 330826411 10484940 complement(4035147..4035656) 1 NC_015422.1 KEGG: dia:Dtpsy_2910 hypothetical protein; hypothetical protein 4035656 10484940 Alide2_3877 Alicycliphilus denitrificans K601 hypothetical protein YP_004389714.1 4035147 R 596154 CDS YP_004389715.1 330826412 10484941 4035805..4036863 1 NC_015422.1 KEGG: dia:Dtpsy_2909 TIM-barrel protein, nifR3 family; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase; nifR3 family TIM-barrel protein 4036863 10484941 Alide2_3878 Alicycliphilus denitrificans K601 nifR3 family TIM-barrel protein YP_004389715.1 4035805 D 596154 CDS YP_004389716.1 330826413 10484942 4036841..4037077 1 NC_015422.1 PFAM: Helix-turn-helix, Fis-type; KEGG: dia:Dtpsy_2908 transcriptional regulator, fis family; Fis family transcriptional regulator 4037077 10484942 Alide2_3879 Alicycliphilus denitrificans K601 Fis family transcriptional regulator YP_004389716.1 4036841 D 596154 CDS YP_004389717.1 330826414 10484943 4037159..4038757 1 NC_015422.1 KEGG: dia:Dtpsy_2907 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: AICARFT/IMPCHase bienzyme; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4038757 10484943 Alide2_3880 Alicycliphilus denitrificans K601 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_004389717.1 4037159 D 596154 CDS YP_004389718.1 330826415 10484944 complement(4038861..4040165) 1 NC_015422.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; KEGG: dia:Dtpsy_2904 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; glutamate-1-semialdehyde-2,1-aminomutase 4040165 10484944 Alide2_3881 Alicycliphilus denitrificans K601 glutamate-1-semialdehyde-2,1-aminomutase YP_004389718.1 4038861 R 596154 CDS YP_004389719.1 330826416 10484945 complement(4040149..4041051) 1 NC_015422.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dia:Dtpsy_2903 phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase type-1 4041051 10484945 Alide2_3882 Alicycliphilus denitrificans K601 phosphomethylpyrimidine kinase type-1 YP_004389719.1 4040149 R 596154 CDS YP_004389720.1 330826417 10484946 4041191..4041364 1 NC_015422.1 KEGG: aav:Aave_0900 rubredoxin-type Fe(Cys)4 protein; manually curated; PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 4041364 10484946 Alide2_3883 Alicycliphilus denitrificans K601 rubredoxin-type Fe(Cys)4 protein YP_004389720.1 4041191 D 596154 CDS YP_004389721.1 330826418 10484947 4041416..4041820 1 NC_015422.1 KEGG: aav:Aave_0901 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 4041820 10484947 Alide2_3884 Alicycliphilus denitrificans K601 response regulator receiver protein YP_004389721.1 4041416 D 596154 CDS YP_004389722.1 330826419 10484948 4041820..4042185 1 NC_015422.1 KEGG: dia:Dtpsy_2900 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 4042185 10484948 Alide2_3885 Alicycliphilus denitrificans K601 response regulator receiver protein YP_004389722.1 4041820 D 596154 CDS YP_004389723.1 330826420 10484949 4042202..4042729 1 NC_015422.1 KEGG: ajs:Ajs_3576 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein; CheW protein 4042729 10484949 Alide2_3886 Alicycliphilus denitrificans K601 CheW protein YP_004389723.1 4042202 D 596154 CDS YP_004389724.1 330826421 10484950 4042750..4045014 1 NC_015422.1 KEGG: dia:Dtpsy_2898 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 4045014 10484950 Alide2_3887 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004389724.1 4042750 D 596154 CDS YP_004389725.1 330826422 10484951 4045058..4050901 1 NC_015422.1 KEGG: dia:Dtpsy_2897 CheA signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, subgroup, homodimeric; CheW-like protein; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; CheW-like protein; CheA signal transduction histidine kinase 4050901 10484951 Alide2_3888 Alicycliphilus denitrificans K601 CheA signal transduction histidine kinase YP_004389725.1 4045058 D 596154 CDS YP_004389726.1 330826423 10484952 4050990..4051622 1 NC_015422.1 manually curated; HAMAP: Protein of unknown function DUF179; KEGG: dia:Dtpsy_2896 protein of unknown function DUF179; PFAM: Protein of unknown function DUF179; hypothetical protein 4051622 10484952 Alide2_3889 Alicycliphilus denitrificans K601 hypothetical protein YP_004389726.1 4050990 D 596154 CDS YP_004389727.1 330826424 10484953 4051619..4052038 1 NC_015422.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: dia:Dtpsy_2895 Holliday junction resolvase-like protein; HAMAP: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like; Holliday junction resolvase 4052038 10484953 Alide2_3890 Alicycliphilus denitrificans K601 Holliday junction resolvase YP_004389727.1 4051619 D 596154 CDS YP_004389728.1 330826425 10484954 4052035..4052571 1 NC_015422.1 KEGG: dia:Dtpsy_2894 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; uracil phosphoribosyltransferase 4052571 10484954 Alide2_3891 Alicycliphilus denitrificans K601 uracil phosphoribosyltransferase YP_004389728.1 4052035 D 596154 CDS YP_004389729.1 330826426 10484955 4052574..4053536 1 NC_015422.1 PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase, eukaryotic; KEGG: dia:Dtpsy_2893 aspartate carbamoyltransferase catalytic subunit; aspartate carbamoyltransferase 4053536 10484955 Alide2_3892 Alicycliphilus denitrificans K601 aspartate carbamoyltransferase YP_004389729.1 4052574 D 596154 CDS YP_004389730.1 330826427 10484956 4053604..4054899 1 NC_015422.1 KEGG: dia:Dtpsy_2892 amidohydrolase; PFAM: Amidohydrolase 1; Allantoinase 4054899 10484956 Alide2_3893 Alicycliphilus denitrificans K601 Allantoinase YP_004389730.1 4053604 D 596154 CDS YP_004389731.1 330826428 10484957 4054910..4055650 1 NC_015422.1 KEGG: dia:Dtpsy_2891 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4055650 10484957 Alide2_3894 Alicycliphilus denitrificans K601 phospholipid/glycerol acyltransferase YP_004389731.1 4054910 D 596154 CDS YP_004389732.1 330826429 10484958 complement(4055653..4056717) 1 NC_015422.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: ajs:Ajs_3566 ABC transporter related; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase 4056717 10484958 Alide2_3895 Alicycliphilus denitrificans K601 Fe(3+)-transporting ATPase YP_004389732.1 4055653 R 596154 CDS YP_004389733.1 330826430 10484959 4056765..4058450 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3565 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 4058450 10484959 Alide2_3896 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389733.1 4056765 D 596154 CDS YP_004389734.1 330826431 10484960 4058466..4058816 1 NC_015422.1 KEGG: ajs:Ajs_3564 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like; arsenate reductase 4058816 10484960 Alide2_3897 Alicycliphilus denitrificans K601 arsenate reductase YP_004389734.1 4058466 D 596154 CDS YP_004389735.1 330826432 10484961 4058883..4060403 1 NC_015422.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: aav:Aave_3965 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; protease Do 4060403 10484961 Alide2_3898 Alicycliphilus denitrificans K601 protease Do YP_004389735.1 4058883 D 596154 CDS YP_004389736.1 330826433 10484962 4060432..4061100 1 NC_015422.1 KEGG: vap:Vapar_2384 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 4061100 10484962 Alide2_3899 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004389736.1 4060432 D 596154 CDS YP_004389737.1 330826434 10484963 4061097..4062473 1 NC_015422.1 KEGG: aav:Aave_3963 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; integral membrane sensor signal transduction histidine kinase 4062473 10484963 Alide2_3900 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004389737.1 4061097 D 596154 CDS YP_004389738.1 330826435 10484964 4062470..4063873 1 NC_015422.1 KEGG: ajs:Ajs_3563 cardiolipin synthetase 2; cardiolipin synthetase 2 4063873 10484964 Alide2_3901 Alicycliphilus denitrificans K601 cardiolipin synthetase 2 YP_004389738.1 4062470 D 596154 CDS YP_004389739.1 330826436 10484965 complement(4063889..4065817) 1 NC_015422.1 KEGG: app:CAP2UW1_1324 oxidoreductase FAD-binding domain protein; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Cytochrome b/b6, N-terminal; Oxidoreductase FAD/NAD(P)-binding; ferredoxin--NAD(+) reductase 4065817 10484965 Alide2_3902 Alicycliphilus denitrificans K601 ferredoxin--NAD(+) reductase YP_004389739.1 4063889 R 596154 CDS YP_004389740.1 330826437 10484966 complement(4065814..4067262) 1 NC_015422.1 KEGG: app:CAP2UW1_3424 putative cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I 4067262 10484966 Alide2_3903 Alicycliphilus denitrificans K601 cytochrome c oxidase subunit I YP_004389740.1 4065814 R 596154 CDS YP_004389741.1 330826438 10484967 complement(4067259..4067762) 1 NC_015422.1 KEGG: app:CAP2UW1_1325 hypothetical protein; hypothetical protein 4067762 10484967 Alide2_3904 Alicycliphilus denitrificans K601 hypothetical protein YP_004389741.1 4067259 R 596154 CDS YP_004389742.1 330826439 10484968 complement(4067759..4069342) 1 NC_015422.1 PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; 4Fe-4S binding domain; KEGG: app:CAP2UW1_1327 methyl-viologen-reducing hydrogenase delta subunit; methyl-viologen-reducing hydrogenase subunit delta 4069342 10484968 Alide2_3905 Alicycliphilus denitrificans K601 methyl-viologen-reducing hydrogenase subunit delta YP_004389742.1 4067759 R 596154 CDS YP_004389743.1 330826440 10484969 complement(4069357..4070214) 1 NC_015422.1 PFAM: Copper chaperone SCO1/SenC; KEGG: app:CAP2UW1_1788 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 4070214 10484969 Alide2_3906 Alicycliphilus denitrificans K601 electron transport protein SCO1/SenC YP_004389743.1 4069357 R 596154 CDS YP_004389744.1 330826441 10484970 complement(4070232..4071134) 1 NC_015422.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: app:CAP2UW1_1789 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 4071134 10484970 Alide2_3907 Alicycliphilus denitrificans K601 protoheme IX farnesyltransferase YP_004389744.1 4070232 R 596154 CDS YP_004389745.1 330826442 10484971 complement(4071152..4072852) 1 NC_015422.1 KEGG: app:CAP2UW1_1790 cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I; cytochrome-c oxidase 4072852 10484971 Alide2_3908 Alicycliphilus denitrificans K601 cytochrome-c oxidase YP_004389745.1 4071152 R 596154 CDS YP_004389746.1 330826443 10484972 complement(4072866..4073405) 1 NC_015422.1 PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: app:CAP2UW1_1791 cytochrome c oxidase subunit II; cytochrome c oxidase subunit II 4073405 10484972 Alide2_3909 Alicycliphilus denitrificans K601 cytochrome c oxidase subunit II YP_004389746.1 4072866 R 596154 CDS YP_004389747.1 330826444 10484973 complement(4073419..4073571) 1 NC_015422.1 KEGG: mag:amb2220 hypothetical protein; hypothetical protein 4073571 10484973 Alide2_3910 Alicycliphilus denitrificans K601 hypothetical protein YP_004389747.1 4073419 R 596154 CDS YP_004389748.1 330826445 10484974 4073838..4074737 1 NC_015422.1 PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: avn:Avin_00950 cytochrome oxidase assembly protein; cytochrome oxidase assembly 4074737 10484974 Alide2_3911 Alicycliphilus denitrificans K601 cytochrome oxidase assembly YP_004389748.1 4073838 D 596154 CDS YP_004389749.1 330826446 10484976 complement(4074947..4079035) 1 NC_015422.1 PFAM: Protein of unknown function DUF490; KEGG: ajs:Ajs_3561 hypothetical protein; hypothetical protein 4079035 10484976 Alide2_3912 Alicycliphilus denitrificans K601 hypothetical protein YP_004389749.1 4074947 R 596154 CDS YP_004389750.1 330826447 10484977 complement(4079141..4081036) 1 NC_015422.1 PFAM: Bacterial surface antigen (D15); KEGG: dia:Dtpsy_2883 surface antigen (D15); surface antigen (D15) 4081036 10484977 Alide2_3913 Alicycliphilus denitrificans K601 surface antigen (D15) YP_004389750.1 4079141 R 596154 CDS YP_004389751.1 330826448 10484978 complement(4081041..4082228) 1 NC_015422.1 KEGG: ajs:Ajs_3559 hypothetical protein; hypothetical protein 4082228 10484978 Alide2_3914 Alicycliphilus denitrificans K601 hypothetical protein YP_004389751.1 4081041 R 596154 CDS YP_004389752.1 330826449 10484979 complement(4082303..4083652) 1 NC_015422.1 PFAM: MmgE/PrpD; KEGG: nmg:Nmag_3457 MmgE/PrpD family protein; MmgE/PrpD family protein 4083652 10484979 Alide2_3915 Alicycliphilus denitrificans K601 MmgE/PrpD family protein YP_004389752.1 4082303 R 596154 CDS YP_004389753.1 330826450 10484980 complement(4083637..4084419) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: pzu:PHZ_c3022 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 4084419 10484980 Alide2_3916 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004389753.1 4083637 R 596154 CDS YP_004389754.1 330826451 10484981 complement(4084432..4085592) 1 NC_015422.1 KEGG: sti:Sthe_1794 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 4085592 10484981 Alide2_3917 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004389754.1 4084432 R 596154 CDS YP_004389755.1 330826452 10484982 complement(4085609..4086805) 1 NC_015422.1 KEGG: sti:Sthe_3003 formyl-CoA transferase; PFAM: CoA-transferase family III; formyl-CoA transferase 4086805 10484982 Alide2_3918 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004389755.1 4085609 R 596154 CDS YP_004389756.1 330826453 10484983 complement(4086813..4087592) 1 NC_015422.1 KEGG: bpy:Bphyt_0617 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; GntR family transcriptional regulator 4087592 10484983 Alide2_3919 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004389756.1 4086813 R 596154 CDS YP_004389757.1 330826454 10484984 4087853..4088866 1 NC_015422.1 KEGG: cti:RALTA_B1738 conserved hypothetical protein; UPF0065; hypothetical protein 4088866 10484984 Alide2_3920 Alicycliphilus denitrificans K601 hypothetical protein YP_004389757.1 4087853 D 596154 CDS YP_004389758.1 330826455 10484985 complement(4088882..4089481) 1 NC_015422.1 KEGG: dia:Dtpsy_2881 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4089481 10484985 Alide2_3921 Alicycliphilus denitrificans K601 N-acetyltransferase GCN5 YP_004389758.1 4088882 R 596154 CDS YP_004389759.1 330826456 10484986 complement(4089493..4090335) 1 NC_015422.1 KEGG: ajs:Ajs_3556 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase 4090335 10484986 Alide2_3922 Alicycliphilus denitrificans K601 AAA ATPase YP_004389759.1 4089493 R 596154 CDS YP_004389760.1 330826457 10484987 4090456..4091115 1 NC_015422.1 PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2878 cytochrome c class I; cytochrome c class I 4091115 10484987 Alide2_3923 Alicycliphilus denitrificans K601 cytochrome c class I YP_004389760.1 4090456 D 596154 CDS YP_004389761.1 330826458 10484988 4091562..4092443 1 NC_015422.1 PFAM: UspA; KEGG: ajs:Ajs_3554 UspA domain-containing protein; UspA domain-containing protein 4092443 10484988 Alide2_3924 Alicycliphilus denitrificans K601 UspA domain-containing protein YP_004389761.1 4091562 D 596154 CDS YP_004389762.1 330826459 10484989 complement(4092378..4092812) 1 NC_015422.1 PFAM: Protein of unknown function DUF1841; KEGG: ajs:Ajs_3553 hypothetical protein; hypothetical protein 4092812 10484989 Alide2_3925 Alicycliphilus denitrificans K601 hypothetical protein YP_004389762.1 4092378 R 596154 CDS YP_004389763.1 330826460 10484990 complement(4092823..4093626) 1 NC_015422.1 TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: dia:Dtpsy_2874 transcriptional regulator, IclR family; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 4093626 10484990 Alide2_3926 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004389763.1 4092823 R 596154 CDS YP_004389764.1 330826461 10484991 4093729..4094424 1 NC_015422.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: dia:Dtpsy_2873 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 4094424 10484991 Alide2_3927 Alicycliphilus denitrificans K601 3-oxoacid CoA-transferase subunit A YP_004389764.1 4093729 D 596154 CDS YP_004389765.1 330826462 10484992 4094447..4095091 1 NC_015422.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: dia:Dtpsy_2872 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 4095091 10484992 Alide2_3928 Alicycliphilus denitrificans K601 3-oxoacid CoA-transferase subunit B YP_004389765.1 4094447 D 596154 CDS YP_004389766.1 330826463 10484993 4095169..4096371 1 NC_015422.1 TIGRFAM: Beta-ketoadipyl CoA thiolase; Thiolase; KEGG: dac:Daci_5563 beta-ketoadipyl CoA thiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; beta-ketoadipyl CoA thiolase 4096371 10484993 Alide2_3929 Alicycliphilus denitrificans K601 beta-ketoadipyl CoA thiolase YP_004389766.1 4095169 D 596154 CDS YP_004389767.1 330826464 10484994 4096433..4097158 1 NC_015422.1 KEGG: aav:Aave_3940 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 4097158 10484994 Alide2_3930 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004389767.1 4096433 D 596154 CDS YP_004389768.1 330826465 10484995 4097203..4098195 1 NC_015422.1 KEGG: dia:Dtpsy_2869 hypothetical protein; hypothetical protein 4098195 10484995 Alide2_3931 Alicycliphilus denitrificans K601 hypothetical protein YP_004389768.1 4097203 D 596154 CDS YP_004389769.1 330826466 10484997 complement(4098577..4099401) 1 NC_015422.1 PFAM: LysR, substrate-binding; KEGG: rec:RHECIAT_CH0001484 putative transcriptional regulator protein, LysR family; LysR family transcriptional regulator 4099401 10484997 Alide2_3933 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389769.1 4098577 R 596154 CDS YP_004389770.1 330826467 10484998 4099446..4100075 1 NC_015422.1 KEGG: bpt:Bpet0051 putative secreted protein; hypothetical protein 4100075 10484998 Alide2_3934 Alicycliphilus denitrificans K601 hypothetical protein YP_004389770.1 4099446 D 596154 CDS YP_004389771.1 330826468 10484999 4100089..4101276 1 NC_015422.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: bph:Bphy_3769 amidohydrolase; PFAM: Peptidase M20; amidohydrolase 4101276 10484999 Alide2_3935 Alicycliphilus denitrificans K601 amidohydrolase YP_004389771.1 4100089 D 596154 CDS YP_004389772.1 330826469 10485000 complement(4101390..4102385) 1 NC_015422.1 KEGG: vap:Vapar_4972 hypothetical protein; hypothetical protein 4102385 10485000 Alide2_3936 Alicycliphilus denitrificans K601 hypothetical protein YP_004389772.1 4101390 R 596154 CDS YP_004389773.1 330826470 10485001 complement(4102412..4103371) 1 NC_015422.1 KEGG: vap:Vapar_4085 hypothetical protein; hypothetical protein 4103371 10485001 Alide2_3937 Alicycliphilus denitrificans K601 hypothetical protein YP_004389773.1 4102412 R 596154 CDS YP_004389774.1 330826471 10485002 complement(4103368..4104801) 1 NC_015422.1 PFAM: MmgE/PrpD; KEGG: vei:Veis_4268 MmgE/PrpD family protein; MmgE/PrpD family protein 4104801 10485002 Alide2_3938 Alicycliphilus denitrificans K601 MmgE/PrpD family protein YP_004389774.1 4103368 R 596154 CDS YP_004389775.1 330826472 10485003 complement(4104806..4105984) 1 NC_015422.1 PFAM: PrpF protein; KEGG: cak:Caul_0497 hypothetical protein; PrpF protein 4105984 10485003 Alide2_3939 Alicycliphilus denitrificans K601 PrpF protein YP_004389775.1 4104806 R 596154 CDS YP_004389776.1 330826473 10485004 complement(4105996..4106997) 1 NC_015422.1 KEGG: pol:Bpro_2294 hypothetical protein; hypothetical protein 4106997 10485004 Alide2_3940 Alicycliphilus denitrificans K601 hypothetical protein YP_004389776.1 4105996 R 596154 CDS YP_004389777.1 330826474 10485005 complement(4107020..4107652) 1 NC_015422.1 KEGG: cak:Caul_0508 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; 3-isopropylmalate dehydratase small subunit 4107652 10485005 Alide2_3941 Alicycliphilus denitrificans K601 3-isopropylmalate dehydratase small subunit YP_004389777.1 4107020 R 596154 CDS YP_004389778.1 330826475 10485006 complement(4107655..4109064) 1 NC_015422.1 KEGG: bja:bll0416 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; 3-isopropylmalate dehydratase large subunit 4109064 10485006 Alide2_3942 Alicycliphilus denitrificans K601 3-isopropylmalate dehydratase large subunit YP_004389778.1 4107655 R 596154 CDS YP_004389779.1 330826476 10485007 complement(4109072..4109935) 1 NC_015422.1 KEGG: cak:Caul_0509 carboxyvinyl-carboxyphosphonate phosphorylmutase; PFAM: Isocitrate lyase/phosphorylmutase; carboxyvinyl-carboxyphosphonate phosphorylmutase 4109935 10485007 Alide2_3943 Alicycliphilus denitrificans K601 carboxyvinyl-carboxyphosphonate phosphorylmutase YP_004389779.1 4109072 R 596154 CDS YP_004389780.1 330826477 10485008 4110099..4110893 1 NC_015422.1 KEGG: mav:MAV_1744 transcriptional regulator, GntR family protein; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 4110893 10485008 Alide2_3944 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004389780.1 4110099 D 596154 CDS YP_004389781.1 330826478 10485009 complement(4110948..4112798) 1 NC_015422.1 KEGG: dia:Dtpsy_2868 glutathione-regulated potassium-efflux system protein KefC; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; potassium efflux system protein 4112798 10485009 Alide2_3945 Alicycliphilus denitrificans K601 potassium efflux system protein YP_004389781.1 4110948 R 596154 CDS YP_004389782.1 330826479 10485010 4112917..4113555 1 NC_015422.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3544 lysine exporter protein LysE/YggA; lysine exporter protein LysE/YggA 4113555 10485010 Alide2_3946 Alicycliphilus denitrificans K601 lysine exporter protein LysE/YggA YP_004389782.1 4112917 D 596154 CDS YP_004389783.1 330826480 10485011 4113635..4114255 1 NC_015422.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_2866 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase 4114255 10485011 Alide2_3947 Alicycliphilus denitrificans K601 Cobyrinic acid ac-diamide synthase YP_004389783.1 4113635 D 596154 CDS YP_004389784.1 330826481 10485012 complement(4114335..4114658) 1 NC_015422.1 KEGG: aav:Aave_3912 hypothetical protein; hypothetical protein 4114658 10485012 Alide2_3948 Alicycliphilus denitrificans K601 hypothetical protein YP_004389784.1 4114335 R 596154 CDS YP_004389785.1 330826482 10485013 4114885..4115808 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_3911 LysR family transcriptional regulator; LysR family transcriptional regulator 4115808 10485013 Alide2_3949 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389785.1 4114885 D 596154 CDS YP_004389786.1 330826483 10485014 complement(4115805..4116281) 1 NC_015422.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: dia:Dtpsy_2864 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 4116281 10485014 Alide2_3950 Alicycliphilus denitrificans K601 tRNA/rRNA methyltransferase SpoU YP_004389786.1 4115805 R 596154 CDS YP_004389787.1 330826484 10485015 complement(4116336..4117073) 1 NC_015422.1 PFAM: Phosphoribosyltransferase; KEGG: ajs:Ajs_3540 ComF family protein; phosphoribosyltransferase 4117073 10485015 Alide2_3951 Alicycliphilus denitrificans K601 phosphoribosyltransferase YP_004389787.1 4116336 R 596154 CDS YP_004389788.1 330826485 10485016 4117109..4118017 1 NC_015422.1 KEGG: ajs:Ajs_3539 biotin synthesis protein BioC; biotin synthesis protein BioC 4118017 10485016 Alide2_3952 Alicycliphilus denitrificans K601 biotin synthesis protein BioC YP_004389788.1 4117109 D 596154 CDS YP_004389789.1 330826486 10485017 4118469..4119632 1 NC_015422.1 KEGG: dia:Dtpsy_2860 cytochrome c oxidase, subunit II; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane domain; Cytochrome c, class I; cytochrome c oxidase subunit II 4119632 10485017 Alide2_3953 Alicycliphilus denitrificans K601 cytochrome c oxidase subunit II YP_004389789.1 4118469 D 596154 CDS YP_004389790.1 330826487 10485018 4119670..4121301 1 NC_015422.1 KEGG: ajs:Ajs_3536 cytochrome-c oxidase; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I 4121301 10485018 Alide2_3954 Alicycliphilus denitrificans K601 cytochrome c oxidase subunit I YP_004389790.1 4119670 D 596154 CDS YP_004389791.1 330826488 10485019 4121319..4121435 1 NC_015422.1 hypothetical protein 4121435 10485019 Alide2_3955 Alicycliphilus denitrificans K601 hypothetical protein YP_004389791.1 4121319 D 596154 CDS YP_004389792.1 330826489 10485020 4121451..4122074 1 NC_015422.1 PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: dia:Dtpsy_2857 cytochrome c oxidase assembly protein; cytochrome c oxidase assembly protein CtaG/Cox11 4122074 10485020 Alide2_3956 Alicycliphilus denitrificans K601 cytochrome c oxidase assembly protein CtaG/Cox11 YP_004389792.1 4121451 D 596154 CDS YP_004389793.1 330826490 10485021 4122074..4122286 1 NC_015422.1 PFAM: Protein of unknown function DUF2970; KEGG: dia:Dtpsy_2856 hypothetical protein; hypothetical protein 4122286 10485021 Alide2_3957 Alicycliphilus denitrificans K601 hypothetical protein YP_004389793.1 4122074 D 596154 CDS YP_004389794.1 330826491 10485022 4122346..4123230 1 NC_015422.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: dia:Dtpsy_2855 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 4123230 10485022 Alide2_3958 Alicycliphilus denitrificans K601 cytochrome c oxidase subunit III YP_004389794.1 4122346 D 596154 CDS YP_004389795.1 330826492 10485023 complement(4123304..4123537) 1 NC_015422.1 KEGG: ajs:Ajs_3531 putative transmembrane protein; transmembrane protein 4123537 10485023 Alide2_3959 Alicycliphilus denitrificans K601 transmembrane protein YP_004389795.1 4123304 R 596154 CDS YP_004389796.1 330826493 10485024 4123544..4124311 1 NC_015422.1 KEGG: dia:Dtpsy_2853 putative transmembrane cytochrome oxidase; transmembrane cytochrome oxidase 4124311 10485024 Alide2_3960 Alicycliphilus denitrificans K601 transmembrane cytochrome oxidase YP_004389796.1 4123544 D 596154 CDS YP_004389797.1 330826494 10485025 4124253..4125008 1 NC_015422.1 KEGG: ajs:Ajs_3529 hypothetical protein; hypothetical protein 4125008 10485025 Alide2_3961 Alicycliphilus denitrificans K601 hypothetical protein YP_004389797.1 4124253 D 596154 CDS YP_004389798.1 330826495 10485026 4125005..4126162 1 NC_015422.1 PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: ajs:Ajs_3528 cytochrome oxidase assembly; cytochrome oxidase assembly 4126162 10485026 Alide2_3962 Alicycliphilus denitrificans K601 cytochrome oxidase assembly YP_004389798.1 4125005 D 596154 CDS YP_004389799.1 330826496 10485027 4126159..4127085 1 NC_015422.1 KEGG: dia:Dtpsy_2850 protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 4127085 10485027 Alide2_3963 Alicycliphilus denitrificans K601 protoheme IX farnesyltransferase YP_004389799.1 4126159 D 596154 CDS YP_004389800.1 330826497 10485028 4127143..4127706 1 NC_015422.1 PFAM: Copper chaperone SCO1/SenC; KEGG: dia:Dtpsy_2849 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 4127706 10485028 Alide2_3964 Alicycliphilus denitrificans K601 electron transport protein SCO1/SenC YP_004389800.1 4127143 D 596154 CDS YP_004389801.1 330826498 10485029 complement(4127740..4128750) 1 NC_015422.1 KEGG: dia:Dtpsy_2846 hypothetical protein; hypothetical protein 4128750 10485029 Alide2_3965 Alicycliphilus denitrificans K601 hypothetical protein YP_004389801.1 4127740 R 596154 CDS YP_004389802.1 330826499 10485030 complement(4128893..4129828) 1 NC_015422.1 KEGG: dia:Dtpsy_2845 RNA polymerase, sigma 32 subunit, RpoH; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-32 subunit RpoH 4129828 10485030 Alide2_3966 Alicycliphilus denitrificans K601 RNA polymerase sigma-32 subunit RpoH YP_004389802.1 4128893 R 596154 CDS YP_004389803.1 330826500 10485031 complement(4130722..4132236) 1 NC_015422.1 PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66 4132236 10485031 Alide2_3967 Alicycliphilus denitrificans K601 transposase IS66 YP_004389803.1 4130722 R 596154 CDS YP_004389804.1 330826501 10485032 complement(4132319..4132651) 1 NC_015422.1 PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 4132651 10485032 Alide2_3968 Alicycliphilus denitrificans K601 IS66 Orf2 family protein YP_004389804.1 4132319 R 596154 CDS YP_004389805.1 330826502 10485033 complement(4132648..4133076) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein 4133076 10485033 Alide2_3969 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389805.1 4132648 R 596154 CDS YP_004389806.1 330826503 10485034 complement(4133131..4133373) 1 NC_015422.1 KEGG: pna:Pnap_4649 IS1477 transposase; hypothetical protein 4133373 10485034 Alide2_3970 Alicycliphilus denitrificans K601 hypothetical protein YP_004389806.1 4133131 R 596154 CDS YP_004389807.1 330826504 10485035 complement(4133406..4133672) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4133672 10485035 Alide2_3971 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389807.1 4133406 R 596154 CDS YP_004389808.1 330826505 10485037 4134223..4135314 1 NC_015422.1 PFAM: Sporulation-related domain; KEGG: aav:Aave_3575 sporulation domain-containing protein; sporulation domain-containing protein 4135314 10485037 Alide2_3973 Alicycliphilus denitrificans K601 sporulation domain-containing protein YP_004389808.1 4134223 D 596154 CDS YP_004389809.1 330826506 10485038 4135388..4135720 1 NC_015422.1 KEGG: ajs:Ajs_0920 hypothetical protein; hypothetical protein 4135720 10485038 Alide2_3974 Alicycliphilus denitrificans K601 hypothetical protein YP_004389809.1 4135388 D 596154 CDS YP_004389810.1 330826507 10485039 complement(4135730..4136962) 1 NC_015422.1 TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; KEGG: dia:Dtpsy_0856 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 4136962 10485039 Alide2_3975 Alicycliphilus denitrificans K601 oxygen-independent coproporphyrinogen III oxidase YP_004389810.1 4135730 R 596154 CDS YP_004389811.1 330826508 10485040 complement(4137054..4137671) 1 NC_015422.1 PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase; KEGG: dia:Dtpsy_0857 putative deoxyribonucleotide triphosphate pyrophosphatase; nucleoside-triphosphatase rdgB 4137671 10485040 Alide2_3976 Alicycliphilus denitrificans K601 nucleoside-triphosphatase rdgB YP_004389811.1 4137054 R 596154 CDS YP_004389812.1 330826509 10485041 complement(4137717..4138454) 1 NC_015422.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: dia:Dtpsy_0858 ribonuclease PH; ribonuclease PH 4138454 10485041 Alide2_3977 Alicycliphilus denitrificans K601 ribonuclease PH YP_004389812.1 4137717 R 596154 CDS YP_004389813.1 330826510 10485042 complement(4138522..4139424) 1 NC_015422.1 KEGG: dia:Dtpsy_0859 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like; protein serine/threonine phosphatase 4139424 10485042 Alide2_3978 Alicycliphilus denitrificans K601 protein serine/threonine phosphatase YP_004389813.1 4138522 R 596154 CDS YP_004389814.1 330826511 10485043 complement(4139421..4140494) 1 NC_015422.1 KEGG: dia:Dtpsy_0860 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; serine/threonine protein kinase 4140494 10485043 Alide2_3979 Alicycliphilus denitrificans K601 serine/threonine protein kinase YP_004389814.1 4139421 R 596154 CDS YP_004389815.1 330826512 10485044 4140533..4141426 1 NC_015422.1 KEGG: ajs:Ajs_0926 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal; hypothetical protein 4141426 10485044 Alide2_3980 Alicycliphilus denitrificans K601 hypothetical protein YP_004389815.1 4140533 D 596154 CDS YP_004389816.1 330826513 10485045 complement(4141458..4144895) 1 NC_015422.1 KEGG: cag:Cagg_1487 hypothetical protein; hypothetical protein 4144895 10485045 Alide2_3981 Alicycliphilus denitrificans K601 hypothetical protein YP_004389816.1 4141458 R 596154 CDS YP_004389817.1 330826514 10485046 complement(4144916..4147213) 1 NC_015422.1 KEGG: cag:Cagg_1488 hypothetical protein; hypothetical protein 4147213 10485046 Alide2_3982 Alicycliphilus denitrificans K601 hypothetical protein YP_004389817.1 4144916 R 596154 CDS YP_004389818.1 330826515 10485047 complement(4147210..4150125) 1 NC_015422.1 TIGRFAM: Conserved hypothetical protein CHP02243; KEGG: bra:BRADO4376 hypothetical protein; hypothetical protein 4150125 10485047 Alide2_3983 Alicycliphilus denitrificans K601 hypothetical protein YP_004389818.1 4147210 R 596154 CDS YP_004389819.1 330826516 10485048 complement(4150122..4152605) 1 NC_015422.1 TIGRFAM: Conserved hypothetical protein CHP02243; KEGG: chl:Chy400_2341 hypothetical protein; hypothetical protein 4152605 10485048 Alide2_3984 Alicycliphilus denitrificans K601 hypothetical protein YP_004389819.1 4150122 R 596154 CDS YP_004389820.1 330826517 10485049 complement(4152602..4152970) 1 NC_015422.1 PFAM: GPW/gp25; KEGG: cag:Cagg_1491 gpW/GP25 family protein; GPW/gp25 family protein 4152970 10485049 Alide2_3985 Alicycliphilus denitrificans K601 GPW/gp25 family protein YP_004389820.1 4152602 R 596154 CDS YP_004389821.1 330826518 10485050 complement(4152974..4153294) 1 NC_015422.1 KEGG: aba:Acid345_0852 hypothetical protein; hypothetical protein 4153294 10485050 Alide2_3986 Alicycliphilus denitrificans K601 hypothetical protein YP_004389821.1 4152974 R 596154 CDS YP_004389822.1 330826519 10485051 complement(4153305..4153814) 1 NC_015422.1 PFAM: Phage baseplate assembly protein V; KEGG: nde:NIDE2232 hypothetical protein; baseplate assembly protein V 4153814 10485051 Alide2_3987 Alicycliphilus denitrificans K601 baseplate assembly protein V YP_004389822.1 4153305 R 596154 CDS YP_004389823.1 330826520 10485052 complement(4153826..4154968) 1 NC_015422.1 KEGG: nde:NIDE2231 hypothetical protein; hypothetical protein 4154968 10485052 Alide2_3988 Alicycliphilus denitrificans K601 hypothetical protein YP_004389823.1 4153826 R 596154 CDS YP_004389824.1 330826521 10485053 complement(4154971..4155333) 1 NC_015422.1 KEGG: aba:Acid345_0855 hypothetical protein; hypothetical protein 4155333 10485053 Alide2_3989 Alicycliphilus denitrificans K601 hypothetical protein YP_004389824.1 4154971 R 596154 CDS YP_004389825.1 330826522 10485054 complement(4155336..4155992) 1 NC_015422.1 KEGG: nde:NIDE2229 hypothetical protein; hypothetical protein 4155992 10485054 Alide2_3990 Alicycliphilus denitrificans K601 hypothetical protein YP_004389825.1 4155336 R 596154 CDS YP_004389826.1 330826523 10485055 complement(4156009..4157364) 1 NC_015422.1 KEGG: scl:sce1839 hypothetical protein; hypothetical protein 4157364 10485055 Alide2_3991 Alicycliphilus denitrificans K601 hypothetical protein YP_004389826.1 4156009 R 596154 CDS YP_004389827.1 330826524 10485056 complement(4157540..4157806) 1 NC_015422.1 hypothetical protein 4157806 10485056 Alide2_3992 Alicycliphilus denitrificans K601 hypothetical protein YP_004389827.1 4157540 R 596154 CDS YP_004389828.1 330826525 10485057 complement(4157803..4160340) 1 NC_015422.1 KEGG: scl:sce2110 hypothetical protein; hypothetical protein 4160340 10485057 Alide2_3993 Alicycliphilus denitrificans K601 hypothetical protein YP_004389828.1 4157803 R 596154 CDS YP_004389829.1 330826526 10485058 complement(4160337..4162277) 1 NC_015422.1 KEGG: nde:NIDE2224 putative ATPase; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase 4162277 10485058 Alide2_3994 Alicycliphilus denitrificans K601 AAA ATPase YP_004389829.1 4160337 R 596154 CDS YP_004389830.1 330826527 10485059 complement(4162274..4163611) 1 NC_015422.1 KEGG: nde:NIDE2223 hypothetical protein; hypothetical protein 4163611 10485059 Alide2_3995 Alicycliphilus denitrificans K601 hypothetical protein YP_004389830.1 4162274 R 596154 CDS YP_004389831.1 330826528 10485060 complement(4163608..4164348) 1 NC_015422.1 KEGG: dre:100006405 hypothetical LOC100006405; hypothetical protein 4164348 10485060 Alide2_3996 Alicycliphilus denitrificans K601 hypothetical protein YP_004389831.1 4163608 R 596154 CDS YP_004389832.1 330826529 10485061 complement(4164345..4165064) 1 NC_015422.1 KEGG: scl:sce2087 hypothetical protein; hypothetical protein 4165064 10485061 Alide2_3997 Alicycliphilus denitrificans K601 hypothetical protein YP_004389832.1 4164345 R 596154 CDS YP_004389833.1 330826530 10485062 complement(4165081..4165605) 1 NC_015422.1 KEGG: cag:Cagg_1504 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: Bacteriophage T4, Gp19, tail tube; hypothetical protein 4165605 10485062 Alide2_3998 Alicycliphilus denitrificans K601 hypothetical protein YP_004389833.1 4165081 R 596154 CDS YP_004389834.1 330826531 10485063 complement(4165621..4167513) 1 NC_015422.1 KEGG: nha:Nham_0832 phage tail sheath protein; phage tail sheath protein 4167513 10485063 Alide2_3999 Alicycliphilus denitrificans K601 phage tail sheath protein YP_004389834.1 4165621 R 596154 CDS YP_004389835.1 330826532 10485064 4167905..4168525 1 NC_015422.1 SMART: Guanylate kinase/L-type calcium channel; TIGRFAM: Guanylate kinase, sub-group; KEGG: dia:Dtpsy_0862 guanylate kinase; PFAM: Guanylate kinase; guanylate kinase 4168525 10485064 Alide2_4000 Alicycliphilus denitrificans K601 guanylate kinase YP_004389835.1 4167905 D 596154 CDS YP_004389836.1 330826533 10485065 4168545..4168748 1 NC_015422.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: dia:Dtpsy_0863 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase, subunit omega/K/RPABC2; DNA-directed RNA polymerase subunit omega 4168748 10485065 Alide2_4001 Alicycliphilus denitrificans K601 DNA-directed RNA polymerase subunit omega YP_004389836.1 4168545 D 596154 CDS YP_004389837.1 330826534 10485066 4168849..4171113 1 NC_015422.1 KEGG: dia:Dtpsy_0864 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; TGS; Amino acid-binding ACT; Metal-dependent phosphohydrolase, HD subdomain; manually curated; TIGRFAM: RelA/SpoT protein; SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain; (p)ppGpp synthetase I SpoT/RelA 4171113 10485066 Alide2_4002 Alicycliphilus denitrificans K601 (p)ppGpp synthetase I SpoT/RelA YP_004389837.1 4168849 D 596154 CDS YP_004389838.1 330826535 10485067 complement(4171120..4171686) 1 NC_015422.1 TIGRFAM: Transcription elongation factor GreB; HAMAP: Transcription elongation factor greA; KEGG: ajs:Ajs_0950 transcription elongation factor GreB; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal; transcription elongation factor GreB 4171686 10485067 Alide2_4003 Alicycliphilus denitrificans K601 transcription elongation factor GreB YP_004389838.1 4171120 R 596154 CDS YP_004389839.1 330826536 10485069 complement(4172015..4172293) 1 NC_015422.1 KEGG: dia:Dtpsy_0866 hypothetical protein; hypothetical protein 4172293 10485069 Alide2_4004 Alicycliphilus denitrificans K601 hypothetical protein YP_004389839.1 4172015 R 596154 CDS YP_004389840.1 330826537 10485070 4172418..4172774 1 NC_015422.1 KEGG: xtr:100487598 30S ribosomal protein S15-like; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15; 30S ribosomal protein S15 4172774 10485070 Alide2_4005 Alicycliphilus denitrificans K601 30S ribosomal protein S15 YP_004389840.1 4172418 D 596154 CDS YP_004389841.1 330826538 10485071 4173005..4175200 1 NC_015422.1 SMART: RNA-binding domain, S1; K Homology; TIGRFAM: Polyribonucleotide nucleotidyltransferase; KEGG: ctt:CtCNB1_1057 3' exoribonuclease; PFAM: Exoribonuclease, phosphorolytic domain 1; Ribosomal protein S1, RNA-binding domain; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; polyribonucleotide nucleotidyltransferase 4175200 10485071 Alide2_4006 Alicycliphilus denitrificans K601 polyribonucleotide nucleotidyltransferase YP_004389841.1 4173005 D 596154 CDS YP_004389842.1 330826539 10485072 4175311..4176315 1 NC_015422.1 TIGRFAM: Quinone oxidoreductase putative, PIG3; KEGG: dia:Dtpsy_0869 NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; NAD(P)H quinone oxidoreductase 4176315 10485072 Alide2_4007 Alicycliphilus denitrificans K601 NAD(P)H quinone oxidoreductase YP_004389842.1 4175311 D 596154 CDS YP_004389843.1 330826540 10485073 4176303..4177106 1 NC_015422.1 TIGRFAM: Triosephosphate isomerase; KEGG: dia:Dtpsy_0870 triosephosphate isomerase; PFAM: Triosephosphate isomerase; triosephosphate isomerase 4177106 10485073 Alide2_4008 Alicycliphilus denitrificans K601 triosephosphate isomerase YP_004389843.1 4176303 D 596154 CDS YP_004389844.1 330826541 10485074 4177103..4177468 1 NC_015422.1 KEGG: dia:Dtpsy_0871 preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 4177468 10485074 Alide2_4009 Alicycliphilus denitrificans K601 preprotein translocase subunit SecG YP_004389844.1 4177103 D 596154 CDS YP_004389845.1 330826542 10485076 4177727..4178116 1 NC_015422.1 KEGG: ajs:Ajs_0957 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; NAD(P)H-quinone oxidoreductase subunit 3 4178116 10485076 Alide2_4010 Alicycliphilus denitrificans K601 NAD(P)H-quinone oxidoreductase subunit 3 YP_004389845.1 4177727 D 596154 CDS YP_004389846.1 330826543 10485077 4178153..4178632 1 NC_015422.1 TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: dia:Dtpsy_0873 NADH dehydrogenase subunit B; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; NADH-quinone oxidoreductase subunit B 4178632 10485077 Alide2_4011 Alicycliphilus denitrificans K601 NADH-quinone oxidoreductase subunit B YP_004389846.1 4178153 D 596154 CDS YP_004389847.1 330826544 10485078 4178642..4179250 1 NC_015422.1 KEGG: aav:Aave_1265 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; NADH (or F420H2) dehydrogenase subunit C 4179250 10485078 Alide2_4012 Alicycliphilus denitrificans K601 NADH (or F420H2) dehydrogenase subunit C YP_004389847.1 4178642 D 596154 CDS YP_004389848.1 330826545 10485079 4179278..4180531 1 NC_015422.1 TIGRFAM: NADH dehydrogenase I, subunit D; KEGG: dia:Dtpsy_0875 NADH dehydrogenase subunit D; PFAM: NADH-quinone oxidoreductase, subunit D; NADH dehydrogenase I subunit D 4180531 10485079 Alide2_4013 Alicycliphilus denitrificans K601 NADH dehydrogenase I subunit D YP_004389848.1 4179278 D 596154 CDS YP_004389849.1 330826546 10485080 4180528..4181019 1 NC_015422.1 TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: dia:Dtpsy_0876 NADH-quinone oxidoreductase, E subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; NADH-quinone oxidoreductase subunit E 4181019 10485080 Alide2_4014 Alicycliphilus denitrificans K601 NADH-quinone oxidoreductase subunit E YP_004389849.1 4180528 D 596154 CDS YP_004389850.1 330826547 10485081 4181016..4182365 1 NC_015422.1 SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: dia:Dtpsy_0877 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH-quinone oxidoreductase subunit F 4182365 10485081 Alide2_4015 Alicycliphilus denitrificans K601 NADH-quinone oxidoreductase subunit F YP_004389850.1 4181016 D 596154 CDS YP_004389851.1 330826548 10485082 4182381..4184501 1 NC_015422.1 SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: aav:Aave_1269 NADH dehydrogenase subunit G; PFAM: Molybdopterin oxidoreductase; Ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; NADH-quinone oxidoreductase subunit G 4184501 10485082 Alide2_4016 Alicycliphilus denitrificans K601 NADH-quinone oxidoreductase subunit G YP_004389851.1 4182381 D 596154 CDS YP_004389852.1 330826549 10485083 4184498..4185574 1 NC_015422.1 KEGG: dia:Dtpsy_0879 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H; NADH dehydrogenase (quinone) 4185574 10485083 Alide2_4017 Alicycliphilus denitrificans K601 NADH dehydrogenase (quinone) YP_004389852.1 4184498 D 596154 CDS YP_004389853.1 330826550 10485084 4185591..4186103 1 NC_015422.1 PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: dia:Dtpsy_0880 NADH dehydrogenase subunit I; NAD(P)H-quinone oxidoreductase subunit I 4186103 10485084 Alide2_4018 Alicycliphilus denitrificans K601 NAD(P)H-quinone oxidoreductase subunit I YP_004389853.1 4185591 D 596154 CDS YP_004389854.1 330826551 10485085 4186145..4186813 1 NC_015422.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: dia:Dtpsy_0881 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 4186813 10485085 Alide2_4019 Alicycliphilus denitrificans K601 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004389854.1 4186145 D 596154 CDS YP_004389855.1 330826552 10485086 4186810..4187118 1 NC_015422.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: dia:Dtpsy_0882 NADH-ubiquinone oxidoreductase chain 4L; NADH-ubiquinone oxidoreductase chain 4L 4187118 10485086 Alide2_4020 Alicycliphilus denitrificans K601 NADH-ubiquinone oxidoreductase chain 4L YP_004389855.1 4186810 D 596154 CDS YP_004389856.1 330826553 10485087 4187175..4189184 1 NC_015422.1 TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: dia:Dtpsy_0883 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; proton-translocating NADH-quinone oxidoreductase subunit L 4189184 10485087 Alide2_4021 Alicycliphilus denitrificans K601 proton-translocating NADH-quinone oxidoreductase subunit L YP_004389856.1 4187175 D 596154 CDS YP_004389857.1 330826554 10485088 4189198..4190673 1 NC_015422.1 TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: dia:Dtpsy_0884 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 4, N-terminal; proton-translocating NADH-quinone oxidoreductase subunit M 4190673 10485088 Alide2_4022 Alicycliphilus denitrificans K601 proton-translocating NADH-quinone oxidoreductase subunit M YP_004389857.1 4189198 D 596154 CDS YP_004389858.1 330826555 10485089 4190695..4192191 1 NC_015422.1 TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: dia:Dtpsy_0885 NADH dehydrogenase subunit N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; proton-translocating NADH-quinone oxidoreductase subunit N 4192191 10485089 Alide2_4023 Alicycliphilus denitrificans K601 proton-translocating NADH-quinone oxidoreductase subunit N YP_004389858.1 4190695 D 596154 CDS YP_004389859.1 330826556 10485090 4192211..4192528 1 NC_015422.1 PFAM: Uncharacterised conserved protein UCP019883, membrane; KEGG: dia:Dtpsy_0886 putative transmembrane protein; hypothetical protein 4192528 10485090 Alide2_4024 Alicycliphilus denitrificans K601 hypothetical protein YP_004389859.1 4192211 D 596154 CDS YP_004389860.1 330826557 10485091 4192539..4193003 1 NC_015422.1 KEGG: dia:Dtpsy_0887 protein of unknown function DUF1178; manually curated; PFAM: Protein of unknown function DUF1178; hypothetical protein 4193003 10485091 Alide2_4025 Alicycliphilus denitrificans K601 hypothetical protein YP_004389860.1 4192539 D 596154 CDS YP_004389861.1 330826558 10485092 complement(4193010..4193378) 1 NC_015422.1 KEGG: ajs:Ajs_0974 hypothetical protein; hypothetical protein 4193378 10485092 Alide2_4026 Alicycliphilus denitrificans K601 hypothetical protein YP_004389861.1 4193010 R 596154 CDS YP_004389862.1 330826559 10485093 complement(4193422..4194840) 1 NC_015422.1 PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: ajs:Ajs_0977 glutamate dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate dehydrogenase 4194840 10485093 Alide2_4027 Alicycliphilus denitrificans K601 glutamate dehydrogenase YP_004389862.1 4193422 R 596154 CDS YP_004389863.1 330826560 10485094 complement(4195073..4197037) 1 NC_015422.1 SMART: MutL, C-terminal, dimerisation; TIGRFAM: DNA mismatch repair protein, N-terminal; KEGG: ajs:Ajs_0978 DNA mismatch repair protein MutL; HAMAP: DNA mismatch repair protein, MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain; DNA mismatch repair protein mutL 4197037 10485094 Alide2_4028 Alicycliphilus denitrificans K601 DNA mismatch repair protein mutL YP_004389863.1 4195073 R 596154 CDS YP_004389864.1 330826561 10485095 complement(4197045..4197299) 1 NC_015422.1 KEGG: dia:Dtpsy_0894 17 kDa surface antigen; 17 kDa surface antigen 4197299 10485095 Alide2_4029 Alicycliphilus denitrificans K601 17 kDa surface antigen YP_004389864.1 4197045 R 596154 CDS YP_004389865.1 330826562 10485096 4197513..4198160 1 NC_015422.1 PFAM: SNARE associated Golgi protein; KEGG: dia:Dtpsy_1467 SNARE associated Golgi protein; hypothetical protein 4198160 10485096 Alide2_4030 Alicycliphilus denitrificans K601 hypothetical protein YP_004389865.1 4197513 D 596154 CDS YP_004389866.1 330826563 10485097 complement(4198164..4199444) 1 NC_015422.1 TIGRFAM: Guanine deaminase; KEGG: vap:Vapar_3881 guanine deaminase; PFAM: Amidohydrolase 1; guanine deaminase 4199444 10485097 Alide2_4031 Alicycliphilus denitrificans K601 guanine deaminase YP_004389866.1 4198164 R 596154 CDS YP_004389867.1 330826564 10485098 complement(4199449..4200804) 1 NC_015422.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: dac:Daci_5908 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 4200804 10485098 Alide2_4032 Alicycliphilus denitrificans K601 xanthine/uracil/vitamin C permease YP_004389867.1 4199449 R 596154 CDS YP_004389868.1 330826565 10485099 complement(4200801..4201856) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vap:Vapar_3905 transcriptional regulator, LysR family; LysR family transcriptional regulator 4201856 10485099 Alide2_4033 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389868.1 4200801 R 596154 CDS YP_004389869.1 330826566 10485100 complement(4201853..4204282) 1 NC_015422.1 TIGRFAM: Xanthine dehydrogenase, molybdopterin binding subunit; KEGG: vap:Vapar_3906 xanthine dehydrogenase, molybdopterin binding subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; xanthine dehydrogenase molybdopterin binding subunit 4204282 10485100 Alide2_4034 Alicycliphilus denitrificans K601 xanthine dehydrogenase molybdopterin binding subunit YP_004389869.1 4201853 R 596154 CDS YP_004389870.1 330826567 10485101 complement(4204292..4205851) 1 NC_015422.1 TIGRFAM: Xanthine dehydrogenase, small subunit; KEGG: dac:Daci_5910 xanthine dehydrogenase small subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding; CO dehydrogenase flavoprotein, C-terminal; xanthine dehydrogenase small subunit 4205851 10485101 Alide2_4035 Alicycliphilus denitrificans K601 xanthine dehydrogenase small subunit YP_004389870.1 4204292 R 596154 CDS YP_004389871.1 330826568 10485102 complement(4206061..4206396) 1 NC_015422.1 PFAM: Cupin 2, conserved barrel; KEGG: har:HEAR2969 hypothetical protein; cupin 2 barrel domain-containing protein 4206396 10485102 Alide2_4036 Alicycliphilus denitrificans K601 cupin 2 barrel domain-containing protein YP_004389871.1 4206061 R 596154 CDS YP_004389872.1 330826569 10485103 complement(4206421..4207827) 1 NC_015422.1 KEGG: ajs:Ajs_0983 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; cell wall hydrolase/autolysin 4207827 10485103 Alide2_4037 Alicycliphilus denitrificans K601 cell wall hydrolase/autolysin YP_004389872.1 4206421 R 596154 CDS YP_004389873.1 330826570 10485104 complement(4207824..4208333) 1 NC_015422.1 manually curated; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; KEGG: dia:Dtpsy_0899 protein of unknown function UPF0079; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; hypothetical protein 4208333 10485104 Alide2_4038 Alicycliphilus denitrificans K601 hypothetical protein YP_004389873.1 4207824 R 596154 CDS YP_004389874.1 330826571 10485105 4208427..4209398 1 NC_015422.1 manually curated; TIGRFAM: 4Fe-4S cluster binding; KEGG: xtr:100492313 putative electron transport protein yjeS-like; PFAM: Domain of unknown function DUF1730; 4Fe-4S binding domain; iron-sulfur cluster binding protein 4209398 10485105 Alide2_4039 Alicycliphilus denitrificans K601 iron-sulfur cluster binding protein YP_004389874.1 4208427 D 596154 CDS YP_004389875.1 330826572 10485106 complement(4209457..4210374) 1 NC_015422.1 PFAM: Auxin efflux carrier; KEGG: dia:Dtpsy_0901 auxin efflux carrier; auxin efflux carrier 4210374 10485106 Alide2_4040 Alicycliphilus denitrificans K601 auxin efflux carrier YP_004389875.1 4209457 R 596154 CDS YP_004389876.1 330826573 10485107 4210567..4211532 1 NC_015422.1 KEGG: dia:Dtpsy_0902 hypothetical protein; hypothetical protein 4211532 10485107 Alide2_4041 Alicycliphilus denitrificans K601 hypothetical protein YP_004389876.1 4210567 D 596154 CDS YP_004389877.1 330826574 10485108 4211580..4212479 1 NC_015422.1 TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerC; Tyrosine recombinase XerD; KEGG: dia:Dtpsy_0903 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; tyrosine recombinase XerC 4212479 10485108 Alide2_4042 Alicycliphilus denitrificans K601 tyrosine recombinase XerC YP_004389877.1 4211580 D 596154 CDS YP_004389878.1 330826575 10485109 4212776..4213597 1 NC_015422.1 PFAM: Methyltransferase type 11; KEGG: acp:A2cp1_1683 methyltransferase type 11; type 11 methyltransferase 4213597 10485109 Alide2_4043 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004389878.1 4212776 D 596154 CDS YP_004389879.1 330826576 10485110 complement(4213609..4215456) 1 NC_015422.1 KEGG: dia:Dtpsy_2971 thiamine biosynthesis protein ThiC; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 4215456 10485110 Alide2_4044 Alicycliphilus denitrificans K601 thiamine biosynthesis protein ThiC YP_004389879.1 4213609 R 596154 CDS YP_004389880.1 330826577 10485111 complement(4215693..4215869) 1 NC_015422.1 KEGG: dia:Dtpsy_2972 hypothetical protein; hypothetical protein 4215869 10485111 Alide2_4045 Alicycliphilus denitrificans K601 hypothetical protein YP_004389880.1 4215693 R 596154 CDS YP_004389881.1 330826578 10485112 complement(4215879..4216802) 1 NC_015422.1 KEGG: dia:Dtpsy_2973 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 4216802 10485112 Alide2_4046 Alicycliphilus denitrificans K601 UDP-3-0-acyl N-acetylglucosamine deacetylase YP_004389881.1 4215879 R 596154 CDS YP_004389882.1 330826579 10485113 complement(4216842..4217606) 1 NC_015422.1 KEGG: bav:BAV0211 IclR-family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 4217606 10485113 Alide2_4047 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004389882.1 4216842 R 596154 CDS YP_004389883.1 330826580 10485114 4217696..4218778 1 NC_015422.1 PFAM: Putative cyclase; KEGG: aav:Aave_3942 hypothetical protein; cyclase family protein 4218778 10485114 Alide2_4048 Alicycliphilus denitrificans K601 cyclase family protein YP_004389883.1 4217696 D 596154 CDS YP_004389884.1 330826581 10485115 4218790..4220508 1 NC_015422.1 KEGG: bpt:Bpet0794 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 4220508 10485115 Alide2_4049 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004389884.1 4218790 D 596154 CDS YP_004389885.1 330826582 10485116 4220505..4221248 1 NC_015422.1 KEGG: bbr:BB4035 putative oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 4221248 10485116 Alide2_4050 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004389885.1 4220505 D 596154 CDS YP_004389886.1 330826583 10485117 4221322..4222527 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_B3887 UreA/short-chain amide ABC transporter; extracellular ligand-binding receptor 4222527 10485117 Alide2_4051 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004389886.1 4221322 D 596154 CDS YP_004389887.1 330826584 10485118 4222544..4223506 1 NC_015422.1 KEGG: bav:BAV0225 exported protein; hypothetical protein 4223506 10485118 Alide2_4052 Alicycliphilus denitrificans K601 hypothetical protein YP_004389887.1 4222544 D 596154 CDS YP_004389888.1 330826585 10485119 4223510..4224709 1 NC_015422.1 KEGG: bav:BAV0226 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 4224709 10485119 Alide2_4053 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004389888.1 4223510 D 596154 CDS YP_004389889.1 330826586 10485120 complement(4224790..4226010) 1 NC_015422.1 TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; KEGG: dia:Dtpsy_2975 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; cell division protein FtsZ 4226010 10485120 Alide2_4054 Alicycliphilus denitrificans K601 cell division protein FtsZ YP_004389889.1 4224790 R 596154 CDS YP_004389890.1 330826587 10485121 complement(4226182..4227411) 1 NC_015422.1 TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; KEGG: dia:Dtpsy_2976 cell division protein FtsA; SMART: Cell division protein FtsA domain; cell division protein FtsA 4227411 10485121 Alide2_4055 Alicycliphilus denitrificans K601 cell division protein FtsA YP_004389890.1 4226182 R 596154 CDS YP_004389891.1 330826588 10485122 complement(4227417..4228289) 1 NC_015422.1 PFAM: Polypeptide-transport-associated, FtsQ-type; Cell division protein FtsQ; KEGG: dia:Dtpsy_2977 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 4228289 10485122 Alide2_4056 Alicycliphilus denitrificans K601 polypeptide-transport-associated domain-containing protein YP_004389891.1 4227417 R 596154 CDS YP_004389892.1 330826589 10485123 complement(4228294..4229262) 1 NC_015422.1 TIGRFAM: D-alanine--D-alanine ligase; KEGG: ajs:Ajs_3668 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; D-alanine--D-alanine ligase 4229262 10485123 Alide2_4057 Alicycliphilus denitrificans K601 D-alanine--D-alanine ligase YP_004389892.1 4228294 R 596154 CDS YP_004389893.1 330826590 10485124 complement(4229259..4230692) 1 NC_015422.1 TIGRFAM: UDP-N-acetylmuramate-alanine ligase; KEGG: dia:Dtpsy_2979 UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramate--L-alanine ligase 4230692 10485124 Alide2_4058 Alicycliphilus denitrificans K601 UDP-N-acetylmuramate--L-alanine ligase YP_004389893.1 4229259 R 596154 CDS YP_004389894.1 330826591 10485125 complement(4230689..4231753) 1 NC_015422.1 TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: N-acetylglucosaminyltransferase, MurG; KEGG: aav:Aave_0821 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 4231753 10485125 Alide2_4059 Alicycliphilus denitrificans K601 UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase YP_004389894.1 4230689 R 596154 CDS YP_004389895.1 330826592 10485126 complement(4231750..4233021) 1 NC_015422.1 KEGG: ajs:Ajs_3671 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein; cell division protein FtsW 4233021 10485126 Alide2_4060 Alicycliphilus denitrificans K601 cell division protein FtsW YP_004389895.1 4231750 R 596154 CDS YP_004389896.1 330826593 10485127 complement(4233018..4234799) 1 NC_015422.1 KEGG: dia:Dtpsy_2982 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; UDP-N-acetylmuramoylalanine--D-glutamate ligase 4234799 10485127 Alide2_4061 Alicycliphilus denitrificans K601 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_004389896.1 4233018 R 596154 CDS YP_004389897.1 330826594 10485128 complement(4234796..4235974) 1 NC_015422.1 KEGG: dia:Dtpsy_2983 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: Glycosyl transferase, family 4; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-N-acetylmuramoyl-pentapeptide- transferase 4235974 10485128 Alide2_4062 Alicycliphilus denitrificans K601 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_004389897.1 4234796 R 596154 CDS YP_004389898.1 330826595 10485129 complement(4235965..4237356) 1 NC_015422.1 TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: ajs:Ajs_3674 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 4237356 10485129 Alide2_4063 Alicycliphilus denitrificans K601 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase YP_004389898.1 4235965 R 596154 CDS YP_004389899.1 330826596 10485130 complement(4237353..4238858) 1 NC_015422.1 PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: dia:Dtpsy_2985 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 4238858 10485130 Alide2_4064 Alicycliphilus denitrificans K601 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase YP_004389899.1 4237353 R 596154 CDS YP_004389900.1 330826597 10485131 complement(4238855..4240603) 1 NC_015422.1 KEGG: dia:Dtpsy_2986 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 4240603 10485131 Alide2_4065 Alicycliphilus denitrificans K601 peptidoglycan glycosyltransferase YP_004389900.1 4238855 R 596154 CDS YP_004389901.1 330826598 10485132 complement(4240600..4240914) 1 NC_015422.1 KEGG: aav:Aave_0814 cell division protein FtsL; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL; cell division protein FtsL 4240914 10485132 Alide2_4066 Alicycliphilus denitrificans K601 cell division protein FtsL YP_004389901.1 4240600 R 596154 CDS YP_004389902.1 330826599 10485133 complement(4240911..4241837) 1 NC_015422.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: dia:Dtpsy_2988 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; ribosomal RNA small subunit methyltransferase H 4241837 10485133 Alide2_4067 Alicycliphilus denitrificans K601 ribosomal RNA small subunit methyltransferase H YP_004389902.1 4240911 R 596154 CDS YP_004389903.1 330826600 10485134 complement(4241847..4242275) 1 NC_015422.1 TIGRFAM: MraZ; HAMAP: MraZ; KEGG: dia:Dtpsy_2989 cell division protein MraZ; PFAM: MraZ domain; protein mraZ 4242275 10485134 Alide2_4068 Alicycliphilus denitrificans K601 protein mraZ YP_004389903.1 4241847 R 596154 CDS YP_004389904.1 330826601 10485135 complement(4242521..4243825) 1 NC_015422.1 TIGRFAM: Heat shock protein HslU; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: dia:Dtpsy_2990 ATP-dependent protease ATP-binding subunit HslU; SMART: ATPase, AAA+ type, core; heat shock protein HslVU, ATPase subunit HslU 4243825 10485135 Alide2_4069 Alicycliphilus denitrificans K601 heat shock protein HslVU, ATPase subunit HslU YP_004389904.1 4242521 R 596154 CDS YP_004389905.1 330826602 10485136 complement(4243912..4244457) 1 NC_015422.1 KEGG: dia:Dtpsy_2991 ATP-dependent protease peptidase subunit; TIGRFAM: ATP-dependent protease, HslV subunit; PFAM: Proteasome, subunit alpha/beta; ATP-dependent protease HslVU, peptidase subunit 4244457 10485136 Alide2_4070 Alicycliphilus denitrificans K601 ATP-dependent protease HslVU, peptidase subunit YP_004389905.1 4243912 R 596154 CDS YP_004389906.1 330826603 10485137 complement(4244518..4246254) 1 NC_015422.1 KEGG: dia:Dtpsy_2992 hypothetical protein; hypothetical protein 4246254 10485137 Alide2_4071 Alicycliphilus denitrificans K601 hypothetical protein YP_004389906.1 4244518 R 596154 CDS YP_004389907.1 330826604 10485138 complement(4246286..4246777) 1 NC_015422.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: dia:Dtpsy_2993 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 4246777 10485138 Alide2_4072 Alicycliphilus denitrificans K601 TraR/DksA family transcriptional regulator YP_004389907.1 4246286 R 596154 CDS YP_004389908.1 330826605 10485139 complement(4247128..4248198) 1 NC_015422.1 KEGG: dia:Dtpsy_2994 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; cobalamin synthesis protein P47K 4248198 10485139 Alide2_4073 Alicycliphilus denitrificans K601 cobalamin synthesis protein P47K YP_004389908.1 4247128 R 596154 CDS YP_004389909.1 330826606 10485140 complement(4248291..4248521) 1 NC_015422.1 KEGG: gpb:HDN1F_32180 hypothetical protein; hypothetical protein 4248521 10485140 Alide2_4074 Alicycliphilus denitrificans K601 hypothetical protein YP_004389909.1 4248291 R 596154 CDS YP_004389910.1 330826607 10485141 complement(4248698..4249423) 1 NC_015422.1 KEGG: dac:Daci_1875 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 4249423 10485141 Alide2_4075 Alicycliphilus denitrificans K601 response regulator receiver protein YP_004389910.1 4248698 R 596154 CDS YP_004389911.1 330826608 10485142 complement(4249416..4250090) 1 NC_015422.1 TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Signal transduction response regulator, receiver domain; KEGG: dac:Daci_1874 response regulator receiver protein; SMART: Signal transduction response regulator, receiver domain; excisionase family DNA binding domain-containing protein 4250090 10485142 Alide2_4076 Alicycliphilus denitrificans K601 excisionase family DNA binding domain-containing protein YP_004389911.1 4249416 R 596154 CDS YP_004389912.1 330826609 10485143 4250171..4250557 1 NC_015422.1 KEGG: ctt:CtCNB1_1998 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 4250557 10485143 Alide2_4077 Alicycliphilus denitrificans K601 response regulator receiver protein YP_004389912.1 4250171 D 596154 CDS YP_004389913.1 330826610 10485144 4250589..4253078 1 NC_015422.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAS/PAC sensor signal transduction histidine kinase 4253078 10485144 Alide2_4078 Alicycliphilus denitrificans K601 PAS/PAC sensor signal transduction histidine kinase YP_004389913.1 4250589 D 596154 CDS YP_004389914.1 330826611 10485145 complement(4253121..4253789) 1 NC_015422.1 TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Signal transduction response regulator, receiver domain; KEGG: aav:Aave_2239 response regulator receiver protein; SMART: Signal transduction response regulator, receiver domain; excisionase family DNA binding domain-containing protein 4253789 10485145 Alide2_4079 Alicycliphilus denitrificans K601 excisionase family DNA binding domain-containing protein YP_004389914.1 4253121 R 596154 CDS YP_004389915.1 330826612 10485146 4253854..4254240 1 NC_015422.1 KEGG: lch:Lcho_0734 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 4254240 10485146 Alide2_4080 Alicycliphilus denitrificans K601 response regulator receiver protein YP_004389915.1 4253854 D 596154 CDS YP_004389916.1 330826613 10485147 4254237..4255046 1 NC_015422.1 KEGG: dac:Daci_0737 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase 4255046 10485147 Alide2_4081 Alicycliphilus denitrificans K601 metal dependent phosphohydrolase YP_004389916.1 4254237 D 596154 CDS YP_004389917.1 330826614 10485148 4255184..4257262 1 NC_015422.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAS/PAC sensor signal transduction histidine kinase 4257262 10485148 Alide2_4082 Alicycliphilus denitrificans K601 PAS/PAC sensor signal transduction histidine kinase YP_004389917.1 4255184 D 596154 CDS YP_004389918.1 330826615 10485149 4257244..4259001 1 NC_015422.1 KEGG: lch:Lcho_4371 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 4259001 10485149 Alide2_4083 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004389918.1 4257244 D 596154 CDS YP_004389919.1 330826616 10485150 4259195..4260889 1 NC_015422.1 KEGG: rfr:Rfer_1480 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 4260889 10485150 Alide2_4084 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004389919.1 4259195 D 596154 CDS YP_004389920.1 330826617 10485151 complement(4260906..4261868) 1 NC_015422.1 KEGG: dia:Dtpsy_2996 tyrosine recombinase XerC; TIGRFAM: Tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; tyrosine recombinase XerC 4261868 10485151 Alide2_4085 Alicycliphilus denitrificans K601 tyrosine recombinase XerC YP_004389920.1 4260906 R 596154 CDS YP_004389921.1 330826618 10485152 complement(4261962..4262657) 1 NC_015422.1 PFAM: Protein of unknown function DUF484; KEGG: dia:Dtpsy_2997 protein of unknown function DUF484; hypothetical protein 4262657 10485152 Alide2_4086 Alicycliphilus denitrificans K601 hypothetical protein YP_004389921.1 4261962 R 596154 CDS YP_004389922.1 330826619 10485153 complement(4262654..4263532) 1 NC_015422.1 TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: dia:Dtpsy_2998 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; diaminopimelate epimerase 4263532 10485153 Alide2_4087 Alicycliphilus denitrificans K601 diaminopimelate epimerase YP_004389922.1 4262654 R 596154 CDS YP_004389923.1 330826620 10485154 4263608..4265302 1 NC_015422.1 manually curated; PFAM: Beta-lactamase-like; NUDIX hydrolase domain; KEGG: dia:Dtpsy_3001 beta-lactamase domain protein; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein 4265302 10485154 Alide2_4088 Alicycliphilus denitrificans K601 beta-lactamase domain-containing protein YP_004389923.1 4263608 D 596154 CDS YP_004389924.1 330826621 10485155 4265295..4266020 1 NC_015422.1 KEGG: dia:Dtpsy_3002 RNA-binding S4 domain protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; RNA-binding S4 domain-containing protein 4266020 10485155 Alide2_4089 Alicycliphilus denitrificans K601 RNA-binding S4 domain-containing protein YP_004389924.1 4265295 D 596154 CDS YP_004389925.1 330826622 10485157 complement(4266512..4266739) 1 NC_015422.1 KEGG: ajs:Ajs_3722 hypothetical protein; hypothetical protein 4266739 10485157 Alide2_4090 Alicycliphilus denitrificans K601 hypothetical protein YP_004389925.1 4266512 R 596154 CDS YP_004389926.1 330826623 10485158 4266849..4267769 1 NC_015422.1 TIGRFAM: Cysteine synthase K/M; Cysteine synthase A; KEGG: dac:Daci_1442 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; cysteine synthase 4267769 10485158 Alide2_4091 Alicycliphilus denitrificans K601 cysteine synthase YP_004389926.1 4266849 D 596154 CDS YP_004389927.1 330826624 10485159 4267800..4268900 1 NC_015422.1 PFAM: Heat shock protein DnaJ, N-terminal; KEGG: bvi:Bcep1808_3882 heat shock protein DnaJ domain-containing protein; heat shock protein DnaJ domain-containing protein 4268900 10485159 Alide2_4092 Alicycliphilus denitrificans K601 heat shock protein DnaJ domain-containing protein YP_004389927.1 4267800 D 596154 CDS YP_004389928.1 330826625 10485160 4269032..4270789 1 NC_015422.1 PFAM: FAD dependent oxidoreductase; KEGG: dia:Dtpsy_3010 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4270789 10485160 Alide2_4093 Alicycliphilus denitrificans K601 FAD dependent oxidoreductase YP_004389928.1 4269032 D 596154 CDS YP_004389929.1 330826626 10485161 4270854..4271303 1 NC_015422.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: dac:Daci_0909 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 4271303 10485161 Alide2_4094 Alicycliphilus denitrificans K601 carboxymuconolactone decarboxylase YP_004389929.1 4270854 D 596154 CDS YP_004389930.1 330826627 10485162 complement(4271342..4272244) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_3510 LysR family transcriptional regulator; LysR family transcriptional regulator 4272244 10485162 Alide2_4095 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389930.1 4271342 R 596154 CDS YP_004389931.1 330826628 10485163 4272314..4273183 1 NC_015422.1 KEGG: xtr:100489146 citrate lyase subunit beta-like; PFAM: Aldehyde-lyase domain; citryl-CoA lyase 4273183 10485163 Alide2_4096 Alicycliphilus denitrificans K601 citryl-CoA lyase YP_004389931.1 4272314 D 596154 CDS YP_004389932.1 330826629 10485164 4273211..4274188 1 NC_015422.1 KEGG: dac:Daci_3512 hypothetical protein; hypothetical protein 4274188 10485164 Alide2_4097 Alicycliphilus denitrificans K601 hypothetical protein YP_004389932.1 4273211 D 596154 CDS YP_004389933.1 330826630 10485165 4274252..4275421 1 NC_015422.1 KEGG: dac:Daci_3513 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 4275421 10485165 Alide2_4098 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004389933.1 4274252 D 596154 CDS YP_004389934.1 330826631 10485166 4275418..4276260 1 NC_015422.1 KEGG: dac:Daci_3514 amidohydrolase 2; manually curated; PFAM: Amidohydrolase 2; amidohydrolase 2 4276260 10485166 Alide2_4099 Alicycliphilus denitrificans K601 amidohydrolase 2 YP_004389934.1 4275418 D 596154 CDS YP_004389935.1 330826632 10485167 4276277..4277233 1 NC_015422.1 KEGG: dac:Daci_3515 hypothetical protein; hypothetical protein 4277233 10485167 Alide2_4100 Alicycliphilus denitrificans K601 hypothetical protein YP_004389935.1 4276277 D 596154 CDS YP_004389936.1 330826633 10485168 complement(4277288..4277794) 1 NC_015422.1 KEGG: cti:RALTA_B1490 transcriptional activator of cyclohexanecarboxylate anaerobic degradation; MarR type; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; MarR family transcriptional regulator 4277794 10485168 Alide2_4101 Alicycliphilus denitrificans K601 MarR family transcriptional regulator YP_004389936.1 4277288 R 596154 CDS YP_004389937.1 330826634 10485169 4277925..4278692 1 NC_015422.1 TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; KEGG: lch:Lcho_1185 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase 4278692 10485169 Alide2_4102 Alicycliphilus denitrificans K601 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase YP_004389937.1 4277925 D 596154 CDS YP_004389938.1 330826635 10485170 4278735..4279517 1 NC_015422.1 TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; KEGG: vei:Veis_4105 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; 2-ketocyclohexanecarboxyl-CoA hydrolase 4279517 10485170 Alide2_4103 Alicycliphilus denitrificans K601 2-ketocyclohexanecarboxyl-CoA hydrolase YP_004389938.1 4278735 D 596154 CDS YP_004389939.1 330826636 10485171 4279537..4280694 1 NC_015422.1 TIGRFAM: Cyclohexanecarboxyl-CoA dehydrogenase; KEGG: lch:Lcho_1187 cyclohexanecarboxyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; cyclohexanecarboxyl-CoA dehydrogenase 4280694 10485171 Alide2_4104 Alicycliphilus denitrificans K601 cyclohexanecarboxyl-CoA dehydrogenase YP_004389939.1 4279537 D 596154 CDS YP_004389940.1 330826637 10485172 4280730..4282385 1 NC_015422.1 TIGRFAM: Cyclohexanecarboxylate-CoA ligase; KEGG: pna:Pnap_2126 cyclohexanecarboxylate-CoA ligase; PFAM: AMP-dependent synthetase/ligase; cyclohexanecarboxylate-CoA ligase 4282385 10485172 Alide2_4105 Alicycliphilus denitrificans K601 cyclohexanecarboxylate-CoA ligase YP_004389940.1 4280730 D 596154 CDS YP_004389941.1 330826638 10485173 complement(4282486..4283418) 1 NC_015422.1 KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha 4283418 10485173 Alide2_4106 Alicycliphilus denitrificans K601 electron transfer flavoprotein subunit alpha YP_004389941.1 4282486 R 596154 CDS YP_004389942.1 330826639 10485174 complement(4283436..4284185) 1 NC_015422.1 KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha/beta 4284185 10485174 Alide2_4107 Alicycliphilus denitrificans K601 electron transfer flavoprotein subunit alpha/beta YP_004389942.1 4283436 R 596154 CDS YP_004389943.1 330826640 10485175 complement(4284210..4285184) 1 NC_015422.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_3732 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 4285184 10485175 Alide2_4108 Alicycliphilus denitrificans K601 2-nitropropane dioxygenase YP_004389943.1 4284210 R 596154 CDS YP_004389944.1 330826641 10485176 complement(4285192..4286187) 1 NC_015422.1 KEGG: dac:Daci_1400 hypothetical protein; hypothetical protein 4286187 10485176 Alide2_4109 Alicycliphilus denitrificans K601 hypothetical protein YP_004389944.1 4285192 R 596154 CDS YP_004389945.1 330826642 10485177 complement(4286260..4287492) 1 NC_015422.1 KEGG: ajs:Ajs_3734 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 4287492 10485177 Alide2_4110 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004389945.1 4286260 R 596154 CDS YP_004389946.1 330826643 10485178 complement(4287517..4287939) 1 NC_015422.1 KEGG: mrb:Mrub_0164 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein 4287939 10485178 Alide2_4111 Alicycliphilus denitrificans K601 phenylacetic acid degradation-like protein YP_004389946.1 4287517 R 596154 CDS YP_004389947.1 330826644 10485179 complement(4287976..4288782) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: xtr:100494378 probable enoyl-CoA hydratase paaG-like; enoyl-CoA hydratase/isomerase 4288782 10485179 Alide2_4112 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004389947.1 4287976 R 596154 CDS YP_004389948.1 330826645 10485180 complement(4288898..4290028) 1 NC_015422.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: dac:Daci_1396 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein 4290028 10485180 Alide2_4113 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004389948.1 4288898 R 596154 CDS YP_004389949.1 330826646 10485181 complement(4290039..4291235) 1 NC_015422.1 KEGG: ajs:Ajs_3737 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; isovaleryl-CoA dehydrogenase 4291235 10485181 Alide2_4114 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004389949.1 4290039 R 596154 CDS YP_004389950.1 330826647 10485182 complement(4291248..4292447) 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: dia:Dtpsy_3019 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal; acetyl-CoA acetyltransferase 4292447 10485182 Alide2_4115 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004389950.1 4291248 R 596154 CDS YP_004389951.1 330826648 10485183 complement(4292593..4294710) 1 NC_015422.1 KEGG: dac:Daci_1393 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; 3-hydroxybutyryl-CoA epimerase 4294710 10485183 Alide2_4116 Alicycliphilus denitrificans K601 3-hydroxybutyryl-CoA epimerase YP_004389951.1 4292593 R 596154 CDS YP_004389952.1 330826649 10485184 4294821..4295729 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_1392 LysR family transcriptional regulator; LysR family transcriptional regulator 4295729 10485184 Alide2_4117 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004389952.1 4294821 D 596154 CDS YP_004389953.1 330826650 10485185 4295767..4296081 1 NC_015422.1 KEGG: bpe:BP0072 transposase; transposase 4296081 10485185 Alide2_4118 Alicycliphilus denitrificans K601 transposase YP_004389953.1 4295767 D 596154 CDS YP_004389954.1 330826651 10485186 complement(4296168..4297082) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 4297082 10485186 Alide2_4119 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004389954.1 4296168 R 596154 CDS YP_004389955.1 330826652 10485187 complement(4297079..4297402) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4297402 10485187 Alide2_4120 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004389955.1 4297079 R 596154 CDS YP_004389956.1 330826653 10485189 complement(4297866..4298219) 1 NC_015422.1 KEGG: dia:Dtpsy_3022 hypothetical protein; hypothetical protein 4298219 10485189 Alide2_4122 Alicycliphilus denitrificans K601 hypothetical protein YP_004389956.1 4297866 R 596154 CDS YP_004389957.1 330826654 10485190 complement(4298305..4299177) 1 NC_015422.1 PFAM: Peptidase M48; KEGG: ajs:Ajs_3742 heat shock protein HtpX; peptidase M48 Ste24p 4299177 10485190 Alide2_4123 Alicycliphilus denitrificans K601 peptidase M48 Ste24p YP_004389957.1 4298305 R 596154 CDS YP_004389958.1 330826655 10485191 complement(4299304..4300095) 1 NC_015422.1 KEGG: ajs:Ajs_3743 putative transmembrane protein; transmembrane protein 4300095 10485191 Alide2_4124 Alicycliphilus denitrificans K601 transmembrane protein YP_004389958.1 4299304 R 596154 CDS YP_004389959.1 330826656 10485192 complement(4300077..4301126) 1 NC_015422.1 PFAM: Amidohydrolase 1; TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase homodimeric type; KEGG: dia:Dtpsy_3026 dihydroorotase; dihydroorotase 4301126 10485192 Alide2_4125 Alicycliphilus denitrificans K601 dihydroorotase YP_004389959.1 4300077 R 596154 CDS YP_004389960.1 330826657 10485194 4301889..4302272 1 NC_015422.1 PFAM: Protein of unknown function DUF488; KEGG: rfr:Rfer_4130 hypothetical protein; hypothetical protein 4302272 10485194 Alide2_4127 Alicycliphilus denitrificans K601 hypothetical protein YP_004389960.1 4301889 D 596154 CDS YP_004389961.1 330826658 10485195 4302282..4302740 1 NC_015422.1 KEGG: ote:Oter_3729 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase-like protein 4302740 10485195 Alide2_4128 Alicycliphilus denitrificans K601 alkylhydroperoxidase-like protein YP_004389961.1 4302282 D 596154 CDS YP_004389962.1 330826659 10485196 complement(4302761..4308595) 1 NC_015422.1 TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter-like; KEGG: ajs:Ajs_3747 UvrA family protein; SMART: ATPase, AAA+ type, core; excinuclease ABC subunit A 4308595 10485196 Alide2_4129 Alicycliphilus denitrificans K601 excinuclease ABC subunit A YP_004389962.1 4302761 R 596154 CDS YP_004389963.1 330826660 10485197 4308729..4309841 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3029 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4309841 10485197 Alide2_4130 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004389963.1 4308729 D 596154 CDS YP_004389964.1 330826661 10485198 complement(4309910..4310077) 1 NC_015422.1 KEGG: ajs:Ajs_3750 hypothetical protein; hypothetical protein 4310077 10485198 Alide2_4131 Alicycliphilus denitrificans K601 hypothetical protein YP_004389964.1 4309910 R 596154 CDS YP_004389965.1 330826662 10485199 complement(4310223..4311242) 1 NC_015422.1 KEGG: ajs:Ajs_3751 porin; porin 4311242 10485199 Alide2_4132 Alicycliphilus denitrificans K601 porin YP_004389965.1 4310223 R 596154 CDS YP_004389966.1 330826663 10485200 complement(4311445..4313139) 1 NC_015422.1 PFAM: General substrate transporter; KEGG: ajs:Ajs_3752 major facilitator superfamily transporter; general substrate transporter 4313139 10485200 Alide2_4133 Alicycliphilus denitrificans K601 general substrate transporter YP_004389966.1 4311445 R 596154 CDS YP_004389967.1 330826664 10485201 4313456..4313764 1 NC_015422.1 PFAM: Protein of unknown function DUF485; KEGG: dac:Daci_5956 hypothetical protein; hypothetical protein 4313764 10485201 Alide2_4134 Alicycliphilus denitrificans K601 hypothetical protein YP_004389967.1 4313456 D 596154 CDS YP_004389968.1 330826665 10485202 4313761..4315497 1 NC_015422.1 KEGG: rpf:Rpic12D_0449 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter; SSS sodium solute transporter superfamily protein 4315497 10485202 Alide2_4135 Alicycliphilus denitrificans K601 SSS sodium solute transporter superfamily protein YP_004389968.1 4313761 D 596154 CDS YP_004389969.1 330826666 10485203 complement(4315621..4316286) 1 NC_015422.1 KEGG: pna:Pnap_0481 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; Exonuclease RNase T and DNA polymerase III 4316286 10485203 Alide2_4136 Alicycliphilus denitrificans K601 Exonuclease RNase T and DNA polymerase III YP_004389969.1 4315621 R 596154 CDS YP_004389970.1 330826667 10485204 complement(4316283..4318097) 1 NC_015422.1 KEGG: dac:Daci_5960 CBS domain-containing protein; PFAM: Domain of unknown function DUF294, nucleotidyltransferase putative; Cystathionine beta-synthase, core; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: Cystathionine beta-synthase, core; Cyclic nucleotide-binding domain; cyclic nucleotide-binding protein 4318097 10485204 Alide2_4137 Alicycliphilus denitrificans K601 cyclic nucleotide-binding protein YP_004389970.1 4316283 R 596154 CDS YP_004389971.1 330826668 10485205 complement(4318120..4318761) 1 NC_015422.1 PFAM: DSBA-like thioredoxin domain; KEGG: dac:Daci_5961 DsbA oxidoreductase; DSBA oxidoreductase 4318761 10485205 Alide2_4138 Alicycliphilus denitrificans K601 DSBA oxidoreductase YP_004389971.1 4318120 R 596154 CDS YP_004389972.1 330826669 10485206 complement(4318758..4319018) 1 NC_015422.1 KEGG: dia:Dtpsy_3035 protein of unknown function DUF1289; manually curated; PFAM: Protein of unknown function DUF1289; hypothetical protein 4319018 10485206 Alide2_4139 Alicycliphilus denitrificans K601 hypothetical protein YP_004389972.1 4318758 R 596154 CDS YP_004389973.1 330826670 10485207 complement(4319015..4319509) 1 NC_015422.1 PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: aav:Aave_4348 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 4319509 10485207 Alide2_4140 Alicycliphilus denitrificans K601 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_004389973.1 4319015 R 596154 CDS YP_004389974.1 330826671 10485208 complement(4319515..4320429) 1 NC_015422.1 KEGG: ajs:Ajs_3757 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase 4320429 10485208 Alide2_4141 Alicycliphilus denitrificans K601 hydroxymethylglutaryl-CoA lyase YP_004389974.1 4319515 R 596154 CDS YP_004389975.1 330826672 10485209 complement(4320715..4321635) 1 NC_015422.1 KEGG: dia:Dtpsy_3039 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; hydroxypyruvate reductase 4321635 10485209 Alide2_4142 Alicycliphilus denitrificans K601 hydroxypyruvate reductase YP_004389975.1 4320715 R 596154 CDS YP_004389976.1 330826673 10485210 complement(4321673..4323694) 1 NC_015422.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: ajs:Ajs_3759 3-methylcrotonoyl-CoA carboxylase, alpha subunit; SMART: Biotin carboxylase, C-terminal; methylcrotonoyl-CoA carboxylase 4323694 10485210 Alide2_4143 Alicycliphilus denitrificans K601 methylcrotonoyl-CoA carboxylase YP_004389976.1 4321673 R 596154 CDS YP_004389977.1 330826674 10485211 complement(4323695..4324414) 1 NC_015422.1 KEGG: dia:Dtpsy_3041 putative transmembrane protein; transmembrane protein 4324414 10485211 Alide2_4144 Alicycliphilus denitrificans K601 transmembrane protein YP_004389977.1 4323695 R 596154 CDS YP_004389978.1 330826675 10485212 complement(4324436..4325215) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: ajs:Ajs_3761 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 4325215 10485212 Alide2_4145 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004389978.1 4324436 R 596154 CDS YP_004389979.1 330826676 10485213 complement(4325226..4326830) 1 NC_015422.1 KEGG: dia:Dtpsy_3044 propionyl-CoA carboxylase; PFAM: Carboxyl transferase; methylcrotonoyl-CoA carboxylase 4326830 10485213 Alide2_4146 Alicycliphilus denitrificans K601 methylcrotonoyl-CoA carboxylase YP_004389979.1 4325226 R 596154 CDS YP_004389980.1 330826677 10485214 complement(4326827..4328548) 1 NC_015422.1 KEGG: ajs:Ajs_3764 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 4328548 10485214 Alide2_4147 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004389980.1 4326827 R 596154 CDS YP_004389981.1 330826678 10485215 4328694..4329752 1 NC_015422.1 KEGG: dia:Dtpsy_3046 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; AraC family transcriptional regulator 4329752 10485215 Alide2_4148 Alicycliphilus denitrificans K601 AraC family transcriptional regulator YP_004389981.1 4328694 D 596154 CDS YP_004389982.1 330826679 10485216 4329812..4330477 1 NC_015422.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: ajs:Ajs_3767 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein 4330477 10485216 Alide2_4149 Alicycliphilus denitrificans K601 glutathione S-transferase domain-containing protein YP_004389982.1 4329812 D 596154 CDS YP_004389983.1 330826680 10485217 4330565..4332178 1 NC_015422.1 KEGG: xtr:100491709 choline dehydrogenase-like; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; choline dehydrogenase 4332178 10485217 Alide2_4150 Alicycliphilus denitrificans K601 choline dehydrogenase YP_004389983.1 4330565 D 596154 CDS YP_004389984.1 330826681 10485218 4332324..4333523 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_0291 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4333523 10485218 Alide2_4151 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004389984.1 4332324 D 596154 CDS YP_004389985.1 330826682 10485219 4333652..4334572 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: axy:AXYL_06412 inner-membrane translocator 70; ABC transporter permease 4334572 10485219 Alide2_4152 Alicycliphilus denitrificans K601 ABC transporter permease YP_004389985.1 4333652 D 596154 CDS YP_004389986.1 330826683 10485220 4334569..4336383 1 NC_015422.1 PFAM: ABC transporter-like; ABC transporter permease; KEGG: axy:AXYL_06411 inner-membrane translocator 69; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 4336383 10485220 Alide2_4153 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004389986.1 4334569 D 596154 CDS YP_004389987.1 330826684 10485221 4336373..4337095 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: axy:AXYL_06410 ABC transporter family protein 103; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase 4337095 10485221 Alide2_4154 Alicycliphilus denitrificans K601 Fe(3+)-transporting ATPase YP_004389987.1 4336373 D 596154 CDS YP_004389988.1 330826685 10485222 4337263..4338873 1 NC_015422.1 KEGG: vei:Veis_0287 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; choline dehydrogenase 4338873 10485222 Alide2_4155 Alicycliphilus denitrificans K601 choline dehydrogenase YP_004389988.1 4337263 D 596154 CDS YP_004389989.1 330826686 10485223 4338884..4340542 1 NC_015422.1 KEGG: ajs:Ajs_3769 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 4340542 10485223 Alide2_4156 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004389989.1 4338884 D 596154 CDS YP_004389990.1 330826687 10485224 complement(4340572..4341960) 1 NC_015422.1 KEGG: ctt:CtCNB1_3118 transcriptional regulator, GntR family; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR family transcriptional regulator 4341960 10485224 Alide2_4157 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004389990.1 4340572 R 596154 CDS YP_004389991.1 330826688 10485225 4342025..4343317 1 NC_015422.1 TIGRFAM: Hydroxymethylglutaryl-CoA reductase, bacterial type; KEGG: xtr:100492358 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like; PFAM: Hydroxymethylglutaryl-CoA reductase, class I/II; hydroxymethylglutaryl-CoA reductase 4343317 10485225 Alide2_4158 Alicycliphilus denitrificans K601 hydroxymethylglutaryl-CoA reductase YP_004389991.1 4342025 D 596154 CDS YP_004389992.1 330826689 10485226 complement(4343377..4344039) 1 NC_015422.1 KEGG: dia:Dtpsy_3047 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase 4344039 10485226 Alide2_4159 Alicycliphilus denitrificans K601 HAD-superfamily hydrolase YP_004389992.1 4343377 R 596154 CDS YP_004389993.1 330826690 10485227 complement(4344036..4346075) 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: dia:Dtpsy_3048 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted; PAS/PAC sensor-containing diguanylate cyclase 4346075 10485227 Alide2_4160 Alicycliphilus denitrificans K601 PAS/PAC sensor-containing diguanylate cyclase YP_004389993.1 4344036 R 596154 CDS YP_004389994.1 330826691 10485228 4346181..4347692 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dia:Dtpsy_3049 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein 4347692 10485228 Alide2_4161 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004389994.1 4346181 D 596154 CDS YP_004389995.1 330826692 10485229 4347940..4348731 1 NC_015422.1 KEGG: rfr:Rfer_2484 hypothetical protein; hypothetical protein 4348731 10485229 Alide2_4162 Alicycliphilus denitrificans K601 hypothetical protein YP_004389995.1 4347940 D 596154 CDS YP_004389996.1 330826693 10485230 complement(4348734..4351694) 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: rfr:Rfer_2485 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 4351694 10485230 Alide2_4163 Alicycliphilus denitrificans K601 diguanylate cyclase/phosphodiesterase YP_004389996.1 4348734 R 596154 CDS YP_004389997.1 330826694 10485231 complement(4351827..4352222) 1 NC_015422.1 KEGG: dac:Daci_5982 hypothetical protein; hypothetical protein 4352222 10485231 Alide2_4164 Alicycliphilus denitrificans K601 hypothetical protein YP_004389997.1 4351827 R 596154 CDS YP_004389998.1 330826695 10485232 complement(4352219..4352920) 1 NC_015422.1 KEGG: pna:Pnap_0218 hypothetical protein; hypothetical protein 4352920 10485232 Alide2_4165 Alicycliphilus denitrificans K601 hypothetical protein YP_004389998.1 4352219 R 596154 CDS YP_004389999.1 330826696 10485233 4353014..4353508 1 NC_015422.1 PFAM: Protein of unknown function DUF421; KEGG: aav:Aave_4363 hypothetical protein; hypothetical protein 4353508 10485233 Alide2_4166 Alicycliphilus denitrificans K601 hypothetical protein YP_004389999.1 4353014 D 596154 CDS YP_004390000.1 330826697 10485234 4353789..4354604 1 NC_015422.1 PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; KEGG: axy:AXYL_04090 transcriptional regulator family protein 21; IclR family transcriptional regulator 4354604 10485234 Alide2_4167 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004390000.1 4353789 D 596154 CDS YP_004390001.1 330826698 10485235 4354601..4355305 1 NC_015422.1 KEGG: aav:Aave_4364 peptidase E; PFAM: Peptidase S51; dipeptidase E 4355305 10485235 Alide2_4168 Alicycliphilus denitrificans K601 dipeptidase E YP_004390001.1 4354601 D 596154 CDS YP_004390002.1 330826699 10485236 4355336..4356238 1 NC_015422.1 PFAM: Protein of unknown function DUF1177; KEGG: axy:AXYL_04088 hypothetical protein; hypothetical protein 4356238 10485236 Alide2_4169 Alicycliphilus denitrificans K601 hypothetical protein YP_004390002.1 4355336 D 596154 CDS YP_004390003.1 330826700 10485237 4356235..4356912 1 NC_015422.1 PFAM: Uncharacterised protein family AroM; KEGG: axy:AXYL_04087 AroM family protein; AroM family protein 4356912 10485237 Alide2_4170 Alicycliphilus denitrificans K601 AroM family protein YP_004390003.1 4356235 D 596154 CDS YP_004390004.1 330826701 10485238 4356947..4357927 1 NC_015422.1 KEGG: axy:AXYL_04086 extra-cytoplasmic solute receptor family protein 94; extra-cytoplasmic solute receptor family protein 4357927 10485238 Alide2_4171 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor family protein YP_004390004.1 4356947 D 596154 CDS YP_004390005.1 330826702 10485241 complement(4359305..4360435) 1 NC_015422.1 KEGG: ajs:Ajs_3774 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 4360435 10485241 Alide2_4174 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004390005.1 4359305 R 596154 CDS YP_004390006.1 330826703 10485242 complement(4360459..4361127) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3053 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4361127 10485242 Alide2_4175 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004390006.1 4360459 R 596154 CDS YP_004390007.1 330826704 10485243 complement(4361197..4362387) 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: ctt:CtCNB1_0487 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 4362387 10485243 Alide2_4176 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004390007.1 4361197 R 596154 CDS YP_004390008.1 330826705 10485244 complement(4362384..4364210) 1 NC_015422.1 HAMAP: Isocitrate dehydrogenase kinasephosphatase; KEGG: ajs:Ajs_3777 bifunctional isocitrate dehydrogenase kinase/phosphatase protein; PFAM: Isocitrate dehydrogenase kinasephosphatase; isocitrate dehydrogenase kinase/phosphatase 4364210 10485244 Alide2_4177 Alicycliphilus denitrificans K601 isocitrate dehydrogenase kinase/phosphatase YP_004390008.1 4362384 R 596154 CDS YP_004390009.1 330826706 10485245 complement(4364263..4364928) 1 NC_015422.1 PFAM: Carbonic anhydrase; KEGG: dia:Dtpsy_3056 carbonate dehydratase; SMART: Carbonic anhydrase; carbonate dehydratase 4364928 10485245 Alide2_4178 Alicycliphilus denitrificans K601 carbonate dehydratase YP_004390009.1 4364263 R 596154 CDS YP_004390010.1 330826707 10485246 complement(4364982..4366172) 1 NC_015422.1 KEGG: ajs:Ajs_3779 isovaleryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; isovaleryl-CoA dehydrogenase 4366172 10485246 Alide2_4179 Alicycliphilus denitrificans K601 isovaleryl-CoA dehydrogenase YP_004390010.1 4364982 R 596154 CDS YP_004390011.1 330826708 10485247 complement(4366312..4366719) 1 NC_015422.1 KEGG: dia:Dtpsy_3058 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 4366719 10485247 Alide2_4180 Alicycliphilus denitrificans K601 MerR family transcriptional regulator YP_004390011.1 4366312 R 596154 CDS YP_004390012.1 330826709 10485253 4372630..4374516 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: ajs:Ajs_3785 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 4374516 10485253 Alide2_4181 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004390012.1 4372630 D 596154 CDS YP_004390013.1 330826710 10485254 complement(4374520..4375629) 1 NC_015422.1 PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain; KEGG: dia:Dtpsy_3060 response regulator receiver modulated CheB methylesterase; SMART: Signal transduction response regulator, receiver domain; response regulator receiver modulated CheB methylesterase 4375629 10485254 Alide2_4182 Alicycliphilus denitrificans K601 response regulator receiver modulated CheB methylesterase YP_004390013.1 4374520 R 596154 CDS YP_004390014.1 330826711 10485255 complement(4375676..4376413) 1 NC_015422.1 KEGG: ajs:Ajs_3787 chemoreceptor glutamine deamidase CheD; PFAM: Chemoreceptor glutamine deamidase CheD; protein CheD 4376413 10485255 Alide2_4183 Alicycliphilus denitrificans K601 protein CheD YP_004390014.1 4375676 R 596154 CDS YP_004390015.1 330826712 10485256 complement(4376430..4377344) 1 NC_015422.1 PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: dia:Dtpsy_3062 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type; chemotaxis protein CheR 4377344 10485256 Alide2_4184 Alicycliphilus denitrificans K601 chemotaxis protein CheR YP_004390015.1 4376430 R 596154 CDS YP_004390016.1 330826713 10485257 complement(4377344..4377826) 1 NC_015422.1 KEGG: dia:Dtpsy_3063 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein; CheW protein 4377826 10485257 Alide2_4185 Alicycliphilus denitrificans K601 CheW protein YP_004390016.1 4377344 R 596154 CDS YP_004390017.1 330826714 10485258 complement(4377861..4379960) 1 NC_015422.1 KEGG: ajs:Ajs_3790 CheA signal transduction histidine kinases; PFAM: CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain; CheA signal transduction histidine kinase 4379960 10485258 Alide2_4186 Alicycliphilus denitrificans K601 CheA signal transduction histidine kinase YP_004390017.1 4377861 R 596154 CDS YP_004390018.1 330826715 10485259 complement(4380017..4380379) 1 NC_015422.1 KEGG: dia:Dtpsy_3065 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 4380379 10485259 Alide2_4187 Alicycliphilus denitrificans K601 response regulator receiver protein YP_004390018.1 4380017 R 596154 CDS YP_004390019.1 330826716 10485260 complement(4380439..4380885) 1 NC_015422.1 KEGG: dia:Dtpsy_3066 hypothetical protein; hypothetical protein 4380885 10485260 Alide2_4188 Alicycliphilus denitrificans K601 hypothetical protein YP_004390019.1 4380439 R 596154 CDS YP_004390020.1 330826717 10485261 4380959..4382080 1 NC_015422.1 KEGG: ajs:Ajs_3793 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; response regulator receiver sensor signal transduction histidine kinase 4382080 10485261 Alide2_4189 Alicycliphilus denitrificans K601 response regulator receiver sensor signal transduction histidine kinase YP_004390020.1 4380959 D 596154 CDS YP_004390021.1 330826718 10485262 4382077..4382706 1 NC_015422.1 KEGG: dia:Dtpsy_3068 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator 4382706 10485262 Alide2_4190 Alicycliphilus denitrificans K601 two component LuxR family transcriptional regulator YP_004390021.1 4382077 D 596154 CDS YP_004390022.1 330826719 10485263 complement(4382791..4383555) 1 NC_015422.1 KEGG: ajs:Ajs_3795 flagellar biosynthetic protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein; flagellar biosynthetic protein FliR 4383555 10485263 Alide2_4191 Alicycliphilus denitrificans K601 flagellar biosynthetic protein FliR YP_004390022.1 4382791 R 596154 CDS YP_004390023.1 330826720 10485264 complement(4383552..4383821) 1 NC_015422.1 KEGG: ajs:Ajs_3796 flagellar biosynthetic protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3; flagellar biosynthetic protein FliQ 4383821 10485264 Alide2_4192 Alicycliphilus denitrificans K601 flagellar biosynthetic protein FliQ YP_004390023.1 4383552 R 596154 CDS YP_004390024.1 330826721 10485265 complement(4383832..4384587) 1 NC_015422.1 KEGG: ajs:Ajs_3797 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP 4384587 10485265 Alide2_4193 Alicycliphilus denitrificans K601 flagellar biosynthetic protein FliP YP_004390024.1 4383832 R 596154 CDS YP_004390025.1 330826722 10485266 complement(4384580..4384948) 1 NC_015422.1 PFAM: Flagellar biosynthesis protein, FliO; KEGG: dia:Dtpsy_3072 flagellar biosynthesis protein FliO; flagellar biosynthesis protein, FliO 4384948 10485266 Alide2_4194 Alicycliphilus denitrificans K601 flagellar biosynthesis protein, FliO YP_004390025.1 4384580 R 596154 CDS YP_004390026.1 330826723 10485267 complement(4384932..4385387) 1 NC_015422.1 KEGG: dia:Dtpsy_3073 flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA); flagellar motor switch protein FliN 4385387 10485267 Alide2_4195 Alicycliphilus denitrificans K601 flagellar motor switch protein FliN YP_004390026.1 4384932 R 596154 CDS YP_004390027.1 330826724 10485268 complement(4385377..4386381) 1 NC_015422.1 KEGG: dia:Dtpsy_3074 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA); flagellar motor switch protein FliM 4386381 10485268 Alide2_4196 Alicycliphilus denitrificans K601 flagellar motor switch protein FliM YP_004390027.1 4385377 R 596154 CDS YP_004390028.1 330826725 10485269 complement(4386388..4386963) 1 NC_015422.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: dia:Dtpsy_3075 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 4386963 10485269 Alide2_4197 Alicycliphilus denitrificans K601 flagellar basal body-associated protein FliL YP_004390028.1 4386388 R 596154 CDS YP_004390029.1 330826726 10485270 complement(4387129..4388496) 1 NC_015422.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: ajs:Ajs_3802 flagellar hook-length control protein; flagellar hook-length control protein-like protein 4388496 10485270 Alide2_4198 Alicycliphilus denitrificans K601 flagellar hook-length control protein-like protein YP_004390029.1 4387129 R 596154 CDS YP_004390030.1 330826727 10485271 complement(4388499..4388963) 1 NC_015422.1 KEGG: dia:Dtpsy_3077 flagellar export protein FliJ; TIGRFAM: Flagellar export FliJ; PFAM: Flagellar export FliJ; flagellar export protein FliJ 4388963 10485271 Alide2_4199 Alicycliphilus denitrificans K601 flagellar export protein FliJ YP_004390030.1 4388499 R 596154 CDS YP_004390031.1 330826728 10485272 complement(4389015..4390418) 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Flagellar export ATPase, FliI, clade 1; ATPase, type III secretion system, FliI/YscN; KEGG: dia:Dtpsy_3078 ATPase FliI/YscN; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; flagellar protein export ATPase FliI 4390418 10485272 Alide2_4200 Alicycliphilus denitrificans K601 flagellar protein export ATPase FliI YP_004390031.1 4389015 R 596154 CDS YP_004390032.1 330826729 10485273 complement(4390408..4391133) 1 NC_015422.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: dia:Dtpsy_3079 flagellar assembly protein FliH; flagellar assembly protein FliH/type III secretion system HrpE 4391133 10485273 Alide2_4201 Alicycliphilus denitrificans K601 flagellar assembly protein FliH/type III secretion system HrpE YP_004390032.1 4390408 R 596154 CDS YP_004390033.1 330826730 10485274 complement(4391155..4392150) 1 NC_015422.1 KEGG: dia:Dtpsy_3080 flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG, C-terminal; flagellar motor switch protein FliG 4392150 10485274 Alide2_4202 Alicycliphilus denitrificans K601 flagellar motor switch protein FliG YP_004390033.1 4391155 R 596154 CDS YP_004390034.1 330826731 10485275 complement(4392181..4393875) 1 NC_015422.1 KEGG: dia:Dtpsy_3081 flagellar M-ring protein FliF; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal; flagellar M-ring protein FliF 4393875 10485275 Alide2_4203 Alicycliphilus denitrificans K601 flagellar M-ring protein FliF YP_004390034.1 4392181 R 596154 CDS YP_004390035.1 330826732 10485276 4394051..4394362 1 NC_015422.1 KEGG: dia:Dtpsy_3082 flagellar hook-basal body complex subunit FliE; TIGRFAM: Flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 4394362 10485276 Alide2_4204 Alicycliphilus denitrificans K601 flagellar hook-basal body complex subunit FliE YP_004390035.1 4394051 D 596154 CDS YP_004390036.1 330826733 10485277 complement(4394578..4394877) 1 NC_015422.1 PFAM: Flagellar export chaperone, FliT; KEGG: dia:Dtpsy_3083 flagellar protein FliT; flagellar export chaperone 4394877 10485277 Alide2_4205 Alicycliphilus denitrificans K601 flagellar export chaperone YP_004390036.1 4394578 R 596154 CDS YP_004390037.1 330826734 10485278 complement(4394881..4395321) 1 NC_015422.1 KEGG: dia:Dtpsy_3084 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS; flagellar protein FliS 4395321 10485278 Alide2_4206 Alicycliphilus denitrificans K601 flagellar protein FliS YP_004390037.1 4394881 R 596154 CDS YP_004390038.1 330826735 10485279 complement(4395388..4396833) 1 NC_015422.1 PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; Flagellin hook, IN motif; KEGG: aav:Aave_4399 flagellar hook-associated 2 domain-containing protein; flagellar hook-associated 2 domain-containing protein 4396833 10485279 Alide2_4207 Alicycliphilus denitrificans K601 flagellar hook-associated 2 domain-containing protein YP_004390038.1 4395388 R 596154 CDS YP_004390039.1 330826736 10485280 complement(4397066..4398526) 1 NC_015422.1 PFAM: Flagellin, D0/D1 domain; Flagellin hook, IN motif; KEGG: aav:Aave_4400 flagellin domain-containing protein; flagellin domain-containing protein 4398526 10485280 Alide2_4208 Alicycliphilus denitrificans K601 flagellin domain-containing protein YP_004390039.1 4397066 R 596154 CDS YP_004390040.1 330826737 10485281 4398861..4400330 1 NC_015422.1 PFAM: Flagellin, D0/D1 domain; Flagellin hook, IN motif; KEGG: aav:Aave_4401 flagellin domain-containing protein; flagellin domain-containing protein 4400330 10485281 Alide2_4209 Alicycliphilus denitrificans K601 flagellin domain-containing protein YP_004390040.1 4398861 D 596154 CDS YP_004390041.1 330826738 10485282 complement(4400492..4405501) 1 NC_015422.1 KEGG: psa:PST_1402 hypothetical protein; manually curated; PFAM: Glycosyl transferase, family 2; Capsule polysaccharide biosynthesis; family 2 glycosyl transferase 4405501 10485282 Alide2_4210 Alicycliphilus denitrificans K601 family 2 glycosyl transferase YP_004390041.1 4400492 R 596154 CDS YP_004390042.1 330826739 10485283 complement(4405501..4406790) 1 NC_015422.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; Acylneuraminate cytidylyltransferase; KEGG: syd:Syncc9605_2247 demethylmenaquinone methyltransferase-like; dimethylmenaquinone methyltransferase 4406790 10485283 Alide2_4211 Alicycliphilus denitrificans K601 dimethylmenaquinone methyltransferase YP_004390042.1 4405501 R 596154 CDS YP_004390043.1 330826740 10485284 4407385..4408245 1 NC_015422.1 KEGG: dia:Dtpsy_3088 MotA/TolQ/ExbB proton channel; TIGRFAM: Flagellar motor stator, MotA; PFAM: MotA/TolQ/ExbB proton channel; flagellar motor stator protein MotA 4408245 10485284 Alide2_4212 Alicycliphilus denitrificans K601 flagellar motor stator protein MotA YP_004390043.1 4407385 D 596154 CDS YP_004390044.1 330826741 10485285 4408264..4409199 1 NC_015422.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_3089 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4409199 10485285 Alide2_4213 Alicycliphilus denitrificans K601 OmpA/MotB domain-containing protein YP_004390044.1 4408264 D 596154 CDS YP_004390045.1 330826742 10485286 4409269..4409655 1 NC_015422.1 KEGG: dia:Dtpsy_3090 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein 4409655 10485286 Alide2_4214 Alicycliphilus denitrificans K601 response regulator receiver protein YP_004390045.1 4409269 D 596154 CDS YP_004390046.1 330826743 10485287 4409658..4410290 1 NC_015422.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: ajs:Ajs_3818 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ 4410290 10485287 Alide2_4215 Alicycliphilus denitrificans K601 chemotaxis phosphatase, CheZ YP_004390046.1 4409658 D 596154 CDS YP_004390047.1 330826744 10485288 4410387..4411547 1 NC_015422.1 PFAM: Type III secretion exporter; KEGG: dia:Dtpsy_3092 type III secretion exporter; type III secretion exporter 4411547 10485288 Alide2_4216 Alicycliphilus denitrificans K601 type III secretion exporter YP_004390047.1 4410387 D 596154 CDS YP_004390048.1 330826745 10485289 4411544..4413634 1 NC_015422.1 KEGG: dia:Dtpsy_3093 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP; flagellar biosynthesis protein FlhA 4413634 10485289 Alide2_4217 Alicycliphilus denitrificans K601 flagellar biosynthesis protein FlhA YP_004390048.1 4411544 D 596154 CDS YP_004390049.1 330826746 10485290 4413631..4415193 1 NC_015422.1 TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: ajs:Ajs_3821 GTP-binding signal recognition particle; SMART: ATPase, AAA+ type, core; flagellar biosynthetic protein FlhF 4415193 10485290 Alide2_4218 Alicycliphilus denitrificans K601 flagellar biosynthetic protein FlhF YP_004390049.1 4413631 D 596154 CDS YP_004390050.1 330826747 10485291 4415183..4415986 1 NC_015422.1 KEGG: ajs:Ajs_3822 hypothetical protein; hypothetical protein 4415986 10485291 Alide2_4219 Alicycliphilus denitrificans K601 hypothetical protein YP_004390050.1 4415183 D 596154 CDS YP_004390051.1 330826748 10485292 4415992..4416708 1 NC_015422.1 KEGG: dia:Dtpsy_3096 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; RNA polymerase sigma 28 subunit FliA/WhiG 4416708 10485292 Alide2_4220 Alicycliphilus denitrificans K601 RNA polymerase sigma 28 subunit FliA/WhiG YP_004390051.1 4415992 D 596154 CDS YP_004390052.1 330826749 10485293 complement(4416838..4417176) 1 NC_015422.1 KEGG: ajs:Ajs_3824 hypothetical protein; hypothetical protein 4417176 10485293 Alide2_4221 Alicycliphilus denitrificans K601 hypothetical protein YP_004390052.1 4416838 R 596154 CDS YP_004390053.1 330826750 10485294 complement(4417212..4417535) 1 NC_015422.1 KEGG: dia:Dtpsy_3098 anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor, FlgM; PFAM: Anti-sigma-28 factor, FlgM; flagellar biosynthesis anti-sigma factor protein FlgM 4417535 10485294 Alide2_4222 Alicycliphilus denitrificans K601 flagellar biosynthesis anti-sigma factor protein FlgM YP_004390053.1 4417212 R 596154 CDS YP_004390054.1 330826751 10485295 complement(4417629..4418375) 1 NC_015422.1 TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; KEGG: dia:Dtpsy_3099 flagella basal body P-ring formation protein FlgA; SMART: SAF domain; flagella basal body P-ring formation protein FlgA 4418375 10485295 Alide2_4223 Alicycliphilus denitrificans K601 flagella basal body P-ring formation protein FlgA YP_004390054.1 4417629 R 596154 CDS YP_004390055.1 330826752 10485296 4418558..4418974 1 NC_015422.1 KEGG: ajs:Ajs_3827 flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgB 4418974 10485296 Alide2_4224 Alicycliphilus denitrificans K601 flagellar basal-body rod protein FlgB YP_004390055.1 4418558 D 596154 CDS YP_004390056.1 330826753 10485297 4418986..4419390 1 NC_015422.1 KEGG: dia:Dtpsy_3101 flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgC 4419390 10485297 Alide2_4225 Alicycliphilus denitrificans K601 flagellar basal-body rod protein FlgC YP_004390056.1 4418986 D 596154 CDS YP_004390057.1 330826754 10485298 4419406..4420068 1 NC_015422.1 PFAM: Flagellar hook capping protein; KEGG: dia:Dtpsy_3102 flagellar hook capping protein; flagellar hook capping protein 4420068 10485298 Alide2_4226 Alicycliphilus denitrificans K601 flagellar hook capping protein YP_004390057.1 4419406 D 596154 CDS YP_004390058.1 330826755 10485299 4420105..4421385 1 NC_015422.1 KEGG: aav:Aave_4423 hypothetical protein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar hook-basal body protein 4421385 10485299 Alide2_4227 Alicycliphilus denitrificans K601 flagellar hook-basal body protein YP_004390058.1 4420105 D 596154 CDS YP_004390059.1 330826756 10485300 4421411..4422151 1 NC_015422.1 KEGG: dia:Dtpsy_3104 flagellar basal-body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgF 4422151 10485300 Alide2_4228 Alicycliphilus denitrificans K601 flagellar basal-body rod protein FlgF YP_004390059.1 4421411 D 596154 CDS YP_004390060.1 330826757 10485301 4422176..4422958 1 NC_015422.1 KEGG: dia:Dtpsy_3105 flagellar basal-body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgG 4422958 10485301 Alide2_4229 Alicycliphilus denitrificans K601 flagellar basal-body rod protein FlgG YP_004390060.1 4422176 D 596154 CDS YP_004390061.1 330826758 10485302 4422973..4423656 1 NC_015422.1 PFAM: Flagellar L-ring protein; KEGG: aav:Aave_4426 flagellar L-ring protein; flagellar L-ring protein 4423656 10485302 Alide2_4230 Alicycliphilus denitrificans K601 flagellar L-ring protein YP_004390061.1 4422973 D 596154 CDS YP_004390062.1 330826759 10485303 4423851..4424996 1 NC_015422.1 PFAM: Flagellar P-ring protein; KEGG: aav:Aave_4428 flagellar basal body P-ring protein; flagellar P-ring protein 4424996 10485303 Alide2_4231 Alicycliphilus denitrificans K601 flagellar P-ring protein YP_004390062.1 4423851 D 596154 CDS YP_004390063.1 330826760 10485304 4424996..4425934 1 NC_015422.1 KEGG: ajs:Ajs_3836 flagellar rod assembly protein/muramidase FlgJ; TIGRFAM: Flagellar protein FlgJ type-2; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ, N-terminal; flagellar rod assembly protein/muramidase FlgJ 4425934 10485304 Alide2_4232 Alicycliphilus denitrificans K601 flagellar rod assembly protein/muramidase FlgJ YP_004390063.1 4424996 D 596154 CDS YP_004390064.1 330826761 10485305 4425946..4427928 1 NC_015422.1 KEGG: dia:Dtpsy_3110 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar hook-associated protein FlgK 4427928 10485305 Alide2_4233 Alicycliphilus denitrificans K601 flagellar hook-associated protein FlgK YP_004390064.1 4425946 D 596154 CDS YP_004390065.1 330826762 10485306 4427930..4429180 1 NC_015422.1 KEGG: aav:Aave_4431 flagellar hook-associated protein 3; TIGRFAM: Flagellar hook-associated protein 3; PFAM: Flagellin, D0/D1 domain; flagellar hook-associated protein 3 4429180 10485306 Alide2_4234 Alicycliphilus denitrificans K601 flagellar hook-associated protein 3 YP_004390065.1 4427930 D 596154 CDS YP_004390066.1 330826763 10485307 4429257..4430471 1 NC_015422.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_3839 putative signal transduction protein; signal transduction protein 4430471 10485307 Alide2_4235 Alicycliphilus denitrificans K601 signal transduction protein YP_004390066.1 4429257 D 596154 CDS YP_004390067.1 330826764 10485308 4430617..4431612 1 NC_015422.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_3841 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 4431612 10485308 Alide2_4236 Alicycliphilus denitrificans K601 2-nitropropane dioxygenase YP_004390067.1 4430617 D 596154 CDS YP_004390068.1 330826765 10485309 complement(4431658..4433097) 1 NC_015422.1 KEGG: dia:Dtpsy_3115 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR; GntR family transcriptional regulator 4433097 10485309 Alide2_4237 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004390068.1 4431658 R 596154 CDS YP_004390069.1 330826766 10485310 4433217..4433816 1 NC_015422.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3843 hypothetical protein; lysine exporter protein LysE/YggA 4433816 10485310 Alide2_4238 Alicycliphilus denitrificans K601 lysine exporter protein LysE/YggA YP_004390069.1 4433217 D 596154 CDS YP_004390070.1 330826767 10485311 4433813..4434745 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: vap:Vapar_0746 protein of unknown function DUF6 transmembrane; hypothetical protein 4434745 10485311 Alide2_4239 Alicycliphilus denitrificans K601 hypothetical protein YP_004390070.1 4433813 D 596154 CDS YP_004390071.1 330826768 10485312 4434860..4436041 1 NC_015422.1 PFAM: Aminotransferase, class I/classII; KEGG: ajs:Ajs_3845 GntR family transcriptional regulator; GntR family transcriptional regulator 4436041 10485312 Alide2_4240 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004390071.1 4434860 D 596154 CDS YP_004390072.1 330826769 10485313 4436056..4436931 1 NC_015422.1 KEGG: dia:Dtpsy_3119 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein; phenazine biosynthesis protein PhzF family protein 4436931 10485313 Alide2_4241 Alicycliphilus denitrificans K601 phenazine biosynthesis protein PhzF family protein YP_004390072.1 4436056 D 596154 CDS YP_004390073.1 330826770 10485314 4436928..4437902 1 NC_015422.1 KEGG: dia:Dtpsy_3120 hypothetical protein; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine ammonia-lyase 4437902 10485314 Alide2_4242 Alicycliphilus denitrificans K601 Threonine ammonia-lyase YP_004390073.1 4436928 D 596154 CDS YP_004390074.1 330826771 10485315 4438099..4439187 1 NC_015422.1 KEGG: dia:Dtpsy_3121 hypothetical protein; hypothetical protein 4439187 10485315 Alide2_4243 Alicycliphilus denitrificans K601 hypothetical protein YP_004390074.1 4438099 D 596154 CDS YP_004390075.1 330826772 10485316 4439213..4440454 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3122 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4440454 10485316 Alide2_4244 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004390075.1 4439213 D 596154 CDS YP_004390076.1 330826773 10485317 4440451..4441578 1 NC_015422.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dia:Dtpsy_3123 short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase 4441578 10485317 Alide2_4245 Alicycliphilus denitrificans K601 NAD-dependent epimerase/dehydratase YP_004390076.1 4440451 D 596154 CDS YP_004390077.1 330826774 10485318 4441608..4442321 1 NC_015422.1 KEGG: dia:Dtpsy_3124 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase 4442321 10485318 Alide2_4246 Alicycliphilus denitrificans K601 phosphoglycerate mutase YP_004390077.1 4441608 D 596154 CDS YP_004390078.1 330826775 10485319 complement(4442312..4443502) 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pmy:Pmen_1813 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 4443502 10485319 Alide2_4247 Alicycliphilus denitrificans K601 diguanylate cyclase YP_004390078.1 4442312 R 596154 CDS YP_004390079.1 330826776 10485320 complement(4443578..4444081) 1 NC_015422.1 PFAM: GLE1, N-terminal, bacteria; KEGG: vap:Vapar_4773 protein of unknown function DUF461; nuclear export factor GLE1 4444081 10485320 Alide2_4248 Alicycliphilus denitrificans K601 nuclear export factor GLE1 YP_004390079.1 4443578 R 596154 CDS YP_004390080.1 330826777 10485321 complement(4444105..4446423) 1 NC_015422.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: ctt:CtCNB1_0607 TonB-dependent receptor; TonB-dependent receptor 4446423 10485321 Alide2_4249 Alicycliphilus denitrificans K601 TonB-dependent receptor YP_004390080.1 4444105 R 596154 CDS YP_004390081.1 330826778 10485322 complement(4446583..4446930) 1 NC_015422.1 KEGG: vap:Vapar_2119 hypothetical protein; hypothetical protein 4446930 10485322 Alide2_4250 Alicycliphilus denitrificans K601 hypothetical protein YP_004390081.1 4446583 R 596154 CDS YP_004390082.1 330826779 10485323 complement(4447026..4447883) 1 NC_015422.1 PFAM: Creatininase; KEGG: dia:Dtpsy_3125 creatininase; creatininase 4447883 10485323 Alide2_4251 Alicycliphilus denitrificans K601 creatininase YP_004390082.1 4447026 R 596154 CDS YP_004390083.1 330826780 10485324 complement(4447900..4448880) 1 NC_015422.1 KEGG: dac:Daci_0588 hypothetical protein; hypothetical protein 4448880 10485324 Alide2_4252 Alicycliphilus denitrificans K601 hypothetical protein YP_004390083.1 4447900 R 596154 CDS YP_004390084.1 330826781 10485325 4449161..4451263 1 NC_015422.1 KEGG: dia:Dtpsy_3127 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane domain; protein-disulfide reductase 4451263 10485325 Alide2_4253 Alicycliphilus denitrificans K601 protein-disulfide reductase YP_004390084.1 4449161 D 596154 CDS YP_004390085.1 330826782 10485326 4451283..4451879 1 NC_015422.1 PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: vap:Vapar_0729 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 4451879 10485326 Alide2_4254 Alicycliphilus denitrificans K601 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_004390085.1 4451283 D 596154 CDS YP_004390086.1 330826783 10485327 complement(4451916..4452662) 1 NC_015422.1 PFAM: Protein of unknown function DUF81; KEGG: har:HEAR3236 hypothetical protein; hypothetical protein 4452662 10485327 Alide2_4255 Alicycliphilus denitrificans K601 hypothetical protein YP_004390086.1 4451916 R 596154 CDS YP_004390087.1 330826784 10485328 4452926..4453954 1 NC_015422.1 PFAM: Peptidoglycan binding-like; YkuD domain; KEGG: bpt:Bpet1138 peptidoglycan binding-like domain-containing protein; peptidoglycan-binding domain-containing protein 4453954 10485328 Alide2_4256 Alicycliphilus denitrificans K601 peptidoglycan-binding domain-containing protein YP_004390087.1 4452926 D 596154 CDS YP_004390088.1 330826785 10485329 4453997..4455115 1 NC_015422.1 TIGRFAM: Uroporphyrinogen decarboxylase HemE; KEGG: ajs:Ajs_3861 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 4455115 10485329 Alide2_4257 Alicycliphilus denitrificans K601 uroporphyrinogen decarboxylase YP_004390088.1 4453997 D 596154 CDS YP_004390089.1 330826786 10485330 4455731..4457839 1 NC_015422.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: dia:Dtpsy_3135 primosomal protein N'; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; primosomal protein N' 4457839 10485330 Alide2_4258 Alicycliphilus denitrificans K601 primosomal protein N' YP_004390089.1 4455731 D 596154 CDS YP_004390090.1 330826787 10485331 complement(4457902..4459089) 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: dia:Dtpsy_0032 beta-ketothiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 4459089 10485331 Alide2_4259 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004390090.1 4457902 R 596154 CDS YP_004390091.1 330826788 10485332 complement(4459101..4459880) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: dac:Daci_0026 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4459880 10485332 Alide2_4260 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004390091.1 4459101 R 596154 CDS YP_004390092.1 330826789 10485333 complement(4459942..4461741) 1 NC_015422.1 KEGG: dac:Daci_0027 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 4461741 10485333 Alide2_4261 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004390092.1 4459942 R 596154 CDS YP_004390093.1 330826790 10485334 complement(4461738..4462559) 1 NC_015422.1 KEGG: xtr:100489501 high-affinity branched-chain amino acid transport ATP-binding protein livF-like; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 4462559 10485334 Alide2_4262 Alicycliphilus denitrificans K601 ABC transporter YP_004390093.1 4461738 R 596154 CDS YP_004390094.1 330826791 10485335 complement(4462568..4463749) 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0029 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4463749 10485335 Alide2_4263 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004390094.1 4462568 R 596154 CDS YP_004390095.1 330826792 10485336 complement(4463761..4464798) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: rfr:Rfer_4064 inner-membrane translocator; ABC transporter permease 4464798 10485336 Alide2_4264 Alicycliphilus denitrificans K601 ABC transporter permease YP_004390095.1 4463761 R 596154 CDS YP_004390096.1 330826793 10485337 complement(4464798..4465679) 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dac:Daci_0031 inner-membrane translocator; ABC transporter permease 4465679 10485337 Alide2_4265 Alicycliphilus denitrificans K601 ABC transporter permease YP_004390096.1 4464798 R 596154 CDS YP_004390097.1 330826794 10485338 complement(4465676..4466530) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dac:Daci_0032 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase 4466530 10485338 Alide2_4266 Alicycliphilus denitrificans K601 sulfate-transporting ATPase YP_004390097.1 4465676 R 596154 CDS YP_004390098.1 330826795 10485339 4466664..4467371 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_0033 TetR family transcriptional regulator; TetR family transcriptional regulator 4467371 10485339 Alide2_4267 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004390098.1 4466664 D 596154 CDS YP_004390099.1 330826796 10485340 complement(4467366..4468370) 1 NC_015422.1 PFAM: Auxin efflux carrier; KEGG: ajs:Ajs_3864 auxin efflux carrier; auxin efflux carrier 4468370 10485340 Alide2_4268 Alicycliphilus denitrificans K601 auxin efflux carrier YP_004390099.1 4467366 R 596154 CDS YP_004390100.1 330826797 10485341 4468473..4470533 1 NC_015422.1 PFAM: DNA helicase, UvrD/REP type; KEGG: dia:Dtpsy_3138 UvrD/REP helicase; UvrD/REP helicase 4470533 10485341 Alide2_4269 Alicycliphilus denitrificans K601 UvrD/REP helicase YP_004390100.1 4468473 D 596154 CDS YP_004390101.1 330826798 10485342 4470539..4470964 1 NC_015422.1 manually curated; KEGG: dia:Dtpsy_3139 hypothetical protein; hypothetical protein 4470964 10485342 Alide2_4270 Alicycliphilus denitrificans K601 hypothetical protein YP_004390101.1 4470539 D 596154 CDS YP_004390102.1 330826799 10485343 4470961..4472130 1 NC_015422.1 KEGG: dia:Dtpsy_3140 phospholipase A1; PFAM: Phospholipase A1; phospholipase A(1) 4472130 10485343 Alide2_4271 Alicycliphilus denitrificans K601 phospholipase A(1) YP_004390102.1 4470961 D 596154 CDS YP_004390103.1 330826800 10485344 complement(4472143..4473270) 1 NC_015422.1 PFAM: Sulphatase-modifying factor; KEGG: axy:AXYL_03118 hypothetical protein; sulfatase-modifying factor protein 4473270 10485344 Alide2_4272 Alicycliphilus denitrificans K601 sulfatase-modifying factor protein YP_004390103.1 4472143 R 596154 CDS YP_004390104.1 330826801 10485345 complement(4473302..4475101) 1 NC_015422.1 PFAM: Sulfatase; KEGG: axy:AXYL_03117 arylsulfatase; sulfatase 4475101 10485345 Alide2_4273 Alicycliphilus denitrificans K601 sulfatase YP_004390104.1 4473302 R 596154 CDS YP_004390105.1 330826802 10485346 complement(4475199..4476140) 1 NC_015422.1 KEGG: axy:AXYL_03122 metapyrocatechase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; catechol 2,3-dioxygenase 4476140 10485346 Alide2_4274 Alicycliphilus denitrificans K601 catechol 2,3-dioxygenase YP_004390105.1 4475199 R 596154 CDS YP_004390106.1 330826803 10485347 complement(4476170..4477933) 1 NC_015422.1 KEGG: reu:Reut_B4679 monooxygenase, FAD-binding; PFAM: Monooxygenase, FAD-binding; 2,4-dichlorophenol 6-monooxygenase 4477933 10485347 Alide2_4275 Alicycliphilus denitrificans K601 2,4-dichlorophenol 6-monooxygenase YP_004390106.1 4476170 R 596154 CDS YP_004390107.1 330826804 10485348 complement(4477973..4478821) 1 NC_015422.1 KEGG: reu:Reut_B4678 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like; ureidoglycolate lyase 4478821 10485348 Alide2_4276 Alicycliphilus denitrificans K601 ureidoglycolate lyase YP_004390107.1 4477973 R 596154 CDS YP_004390108.1 330826805 10485349 complement(4478895..4480037) 1 NC_015422.1 KEGG: vap:Vapar_4252 porin; porin 4480037 10485349 Alide2_4277 Alicycliphilus denitrificans K601 porin YP_004390108.1 4478895 R 596154 CDS YP_004390109.1 330826806 10485350 4480234..4480932 1 NC_015422.1 KEGG: axy:AXYL_03119 GntR family regulatory protein 35; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 4480932 10485350 Alide2_4278 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004390109.1 4480234 D 596154 CDS YP_004390110.1 330826807 10485351 4481178..4481564 1 NC_015422.1 KEGG: dia:Dtpsy_3141 hypothetical protein; hypothetical protein 4481564 10485351 Alide2_4279 Alicycliphilus denitrificans K601 hypothetical protein YP_004390110.1 4481178 D 596154 CDS YP_004390111.1 330826808 10485352 complement(4481642..4482118) 1 NC_015422.1 PFAM: UspA; KEGG: dia:Dtpsy_3142 UspA domain protein; UspA domain-containing protein 4482118 10485352 Alide2_4280 Alicycliphilus denitrificans K601 UspA domain-containing protein YP_004390111.1 4481642 R 596154 CDS YP_004390112.1 330826809 10485353 4482178..4483350 1 NC_015422.1 PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: dia:Dtpsy_3143 queuine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 4483350 10485353 Alide2_4281 Alicycliphilus denitrificans K601 queuine tRNA-ribosyltransferase YP_004390112.1 4482178 D 596154 CDS YP_004390113.1 330826810 10485354 complement(4483355..4484398) 1 NC_015422.1 KEGG: dia:Dtpsy_3145 hypothetical protein; hypothetical protein 4484398 10485354 Alide2_4282 Alicycliphilus denitrificans K601 hypothetical protein YP_004390113.1 4483355 R 596154 CDS YP_004390114.1 330826811 10485355 4484521..4484934 1 NC_015422.1 TIGRFAM: PAS; PFAM: PAS fold; KEGG: dar:Daro_3803 PAS; SMART: PAS; PAC motif; PAS sensor protein 4484934 10485355 Alide2_4283 Alicycliphilus denitrificans K601 PAS sensor protein YP_004390114.1 4484521 D 596154 CDS YP_004390115.1 330826812 10485356 4485379..4486209 1 NC_015422.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: dac:Daci_4431 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase 4486209 10485356 Alide2_4284 Alicycliphilus denitrificans K601 6-phosphogluconate dehydrogenase YP_004390115.1 4485379 D 596154 CDS YP_004390116.1 330826813 10485357 4486259..4487227 1 NC_015422.1 KEGG: dac:Daci_4430 hypothetical protein; hypothetical protein 4487227 10485357 Alide2_4285 Alicycliphilus denitrificans K601 hypothetical protein YP_004390116.1 4486259 D 596154 CDS YP_004390117.1 330826814 10485358 4487346..4488326 1 NC_015422.1 KEGG: dac:Daci_5794 hypothetical protein; hypothetical protein 4488326 10485358 Alide2_4286 Alicycliphilus denitrificans K601 hypothetical protein YP_004390117.1 4487346 D 596154 CDS YP_004390118.1 330826815 10485359 4488380..4489054 1 NC_015422.1 PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4429 hypothetical protein; dimethylmenaquinone methyltransferase 4489054 10485359 Alide2_4287 Alicycliphilus denitrificans K601 dimethylmenaquinone methyltransferase YP_004390118.1 4488380 D 596154 CDS YP_004390119.1 330826816 10485360 complement(4489023..4489718) 1 NC_015422.1 KEGG: bpt:Bpet0387 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 4489718 10485360 Alide2_4288 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004390119.1 4489023 R 596154 CDS YP_004390120.1 330826817 10485361 complement(4489738..4491681) 1 NC_015422.1 KEGG: ajs:Ajs_3878 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; Major facilitator superfamily MFS-1; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4491681 10485361 Alide2_4289 Alicycliphilus denitrificans K601 phospholipid/glycerol acyltransferase YP_004390120.1 4489738 R 596154 CDS YP_004390121.1 330826818 10485362 4491871..4493751 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: pna:Pnap_0392 ATP-dependent metalloprotease FtsH; PFAM: ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; Peptidase M41; ATP-dependent metalloprotease FtsH 4493751 10485362 Alide2_4290 Alicycliphilus denitrificans K601 ATP-dependent metalloprotease FtsH YP_004390121.1 4491871 D 596154 CDS YP_004390122.1 330826819 10485363 4493840..4494406 1 NC_015422.1 PFAM: Phosphoribosyltransferase; KEGG: tbd:Tbd_0103 transcriptional regulator PyrR, putative; phosphoribosyltransferase 4494406 10485363 Alide2_4291 Alicycliphilus denitrificans K601 phosphoribosyltransferase YP_004390122.1 4493840 D 596154 CDS YP_004390123.1 330826820 10485364 4494403..4495053 1 NC_015422.1 KEGG: rfr:Rfer_0394 phosphoribosyltransferase; phosphoribosyltransferase 4495053 10485364 Alide2_4292 Alicycliphilus denitrificans K601 phosphoribosyltransferase YP_004390123.1 4494403 D 596154 CDS YP_004390124.1 330826821 10485365 complement(4495055..4495705) 1 NC_015422.1 PFAM: Dienelactone hydrolase; KEGG: rfr:Rfer_0395 dienelactone hydrolase; dienelactone hydrolase 4495705 10485365 Alide2_4293 Alicycliphilus denitrificans K601 dienelactone hydrolase YP_004390124.1 4495055 R 596154 CDS YP_004390125.1 330826822 10485366 complement(4495713..4496696) 1 NC_015422.1 KEGG: azo:azo0111 putative alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 2; PFAM: Alcohol dehydrogenase GroES-like; zinc-binding alcohol dehydrogenase family protein 4496696 10485366 Alide2_4294 Alicycliphilus denitrificans K601 zinc-binding alcohol dehydrogenase family protein YP_004390125.1 4495713 R 596154 CDS YP_004390126.1 330826823 10485367 4496911..4497900 1 NC_015422.1 KEGG: dia:Dtpsy_3156 hypothetical protein; hypothetical protein 4497900 10485367 Alide2_4295 Alicycliphilus denitrificans K601 hypothetical protein YP_004390126.1 4496911 D 596154 CDS YP_004390127.1 330826824 10485368 4497923..4499389 1 NC_015422.1 PFAM: Monooxygenase, FAD-binding; KEGG: ajs:Ajs_3884 FAD dependent oxidoreductase; monooxygenase FAD-binding protein 4499389 10485368 Alide2_4296 Alicycliphilus denitrificans K601 monooxygenase FAD-binding protein YP_004390127.1 4497923 D 596154 CDS YP_004390128.1 330826825 10485369 4499386..4500492 1 NC_015422.1 KEGG: ajs:Ajs_3885 uncharacterized peroxidase-related enzyme; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 4500492 10485369 Alide2_4297 Alicycliphilus denitrificans K601 peroxidase-like protein YP_004390128.1 4499386 D 596154 CDS YP_004390129.1 330826826 10485370 complement(4500552..4501802) 1 NC_015422.1 KEGG: dia:Dtpsy_3160 domain of unknown function DUF1745; PFAM: FIST domain, N-terminal; FIST C domain; SMART: FIST domain, N-terminal; hypothetical protein 4501802 10485370 Alide2_4298 Alicycliphilus denitrificans K601 hypothetical protein YP_004390129.1 4500552 R 596154 CDS YP_004390130.1 330826827 10485371 complement(4501827..4502609) 1 NC_015422.1 KEGG: dia:Dtpsy_3161 hypothetical protein; hypothetical protein 4502609 10485371 Alide2_4299 Alicycliphilus denitrificans K601 hypothetical protein YP_004390130.1 4501827 R 596154 CDS YP_004390131.1 330826828 10485372 4502837..4503268 1 NC_015422.1 PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_3162 histone family protein DNA-binding protein; histone family protein DNA-binding protein 4503268 10485372 Alide2_4300 Alicycliphilus denitrificans K601 histone family protein DNA-binding protein YP_004390131.1 4502837 D 596154 CDS YP_004390132.1 330826829 10485373 complement(4503326..4504078) 1 NC_015422.1 KEGG: ajs:Ajs_3890 protein tyrosine/serine phosphatase; protein tyrosine/serine phosphatase 4504078 10485373 Alide2_4301 Alicycliphilus denitrificans K601 protein tyrosine/serine phosphatase YP_004390132.1 4503326 R 596154 CDS YP_004390133.1 330826830 10485375 complement(4504874..4506151) 1 NC_015422.1 KEGG: neu:NE1310 HipA protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; HipA N-terminal domain-containing protein 4506151 10485375 Alide2_4303 Alicycliphilus denitrificans K601 HipA N-terminal domain-containing protein YP_004390133.1 4504874 R 596154 CDS YP_004390134.1 330826831 10485376 complement(4506148..4506393) 1 NC_015422.1 TIGRFAM: Transcription regulator, HipB-like; PFAM: Helix-turn-helix type 3; KEGG: neu:NE1311 helix-hairpin-helix DNA-binding motif-containing protein; SMART: Helix-turn-helix type 3; y4mF family transcriptional regulator 4506393 10485376 Alide2_4304 Alicycliphilus denitrificans K601 y4mF family transcriptional regulator YP_004390134.1 4506148 R 596154 CDS YP_004390135.1 330826832 10485379 4508028..4509158 1 NC_015422.1 KEGG: pol:Bpro_2745 putative transposase; transposase 4509158 10485379 Alide2_4307 Alicycliphilus denitrificans K601 transposase YP_004390135.1 4508028 D 596154 CDS YP_004390136.1 330826833 10485380 4509124..4509417 1 NC_015422.1 KEGG: pol:Bpro_2744 hypothetical protein; hypothetical protein 4509417 10485380 Alide2_4308 Alicycliphilus denitrificans K601 hypothetical protein YP_004390136.1 4509124 D 596154 CDS YP_004390137.1 330826834 10485381 complement(4509693..4510898) 1 NC_015422.1 PFAM: Transposase, IS4-like; KEGG: bvi:Bcep1808_6138 transposase, IS4 family protein; transposase IS4 family protein 4510898 10485381 Alide2_4309 Alicycliphilus denitrificans K601 transposase IS4 family protein YP_004390137.1 4509693 R 596154 CDS YP_004390138.1 330826835 10485382 4510974..4511732 1 NC_015422.1 KEGG: pna:Pnap_4724 transposase; hypothetical protein 4511732 10485382 Alide2_4310 Alicycliphilus denitrificans K601 hypothetical protein YP_004390138.1 4510974 D 596154 CDS YP_004390139.1 330826836 10485383 complement(4511761..4512651) 1 NC_015422.1 KEGG: ajs:Ajs_2099 putative signal peptide; hypothetical protein 4512651 10485383 Alide2_4311 Alicycliphilus denitrificans K601 hypothetical protein YP_004390139.1 4511761 R 596154 CDS YP_004390140.1 330826837 10485384 complement(4512753..4513505) 1 NC_015422.1 KEGG: ajs:Ajs_2100 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; cyclopentanol dehydrogenase 4513505 10485384 Alide2_4312 Alicycliphilus denitrificans K601 cyclopentanol dehydrogenase YP_004390140.1 4512753 R 596154 CDS YP_004390141.1 330826838 10485385 complement(4513578..4514492) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 4514492 10485385 Alide2_4313 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004390141.1 4513578 R 596154 CDS YP_004390142.1 330826839 10485386 complement(4514489..4514812) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4514812 10485386 Alide2_4314 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004390142.1 4514489 R 596154 CDS YP_004390143.1 330826840 10485387 4514972..4516498 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit 4516498 10485387 Alide2_4315 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004390143.1 4514972 D 596154 CDS YP_004390144.1 330826841 10485388 4516488..4517291 1 NC_015422.1 KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 4517291 10485388 Alide2_4316 Alicycliphilus denitrificans K601 IstB domain-containing protein ATP-binding protein YP_004390144.1 4516488 D 596154 CDS YP_004390145.1 330826842 10485389 complement(4517418..4517810) 1 NC_015422.1 KEGG: azc:AZC_0960 cytochrome c; manually curated; PFAM: Cytochrome c, class I; cytochrome c class I 4517810 10485389 Alide2_4317 Alicycliphilus denitrificans K601 cytochrome c class I YP_004390145.1 4517418 R 596154 CDS YP_004390146.1 330826843 10485390 complement(4518046..4519785) 1 NC_015422.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: cwo:Cwoe_1511 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 4519785 10485390 Alide2_4318 Alicycliphilus denitrificans K601 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004390146.1 4518046 R 596154 CDS YP_004390147.1 330826844 10485391 complement(4519890..4520486) 1 NC_015422.1 PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G 4520486 10485391 Alide2_4319 Alicycliphilus denitrificans K601 carbon monoxide dehydrogenase subunit G YP_004390147.1 4519890 R 596154 CDS YP_004390148.1 330826845 10485392 complement(4520535..4523009) 1 NC_015422.1 KEGG: sti:Sthe_2310 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; carbon-monoxide dehydrogenase 4523009 10485392 Alide2_4320 Alicycliphilus denitrificans K601 carbon-monoxide dehydrogenase YP_004390148.1 4520535 R 596154 CDS YP_004390149.1 330826846 10485393 complement(4523006..4523503) 1 NC_015422.1 KEGG: tro:trd_0578 aldehyde oxidase small subunit; PFAM: [2Fe-2S]-binding; Ferredoxin; carbon-monoxide dehydrogenase 4523503 10485393 Alide2_4321 Alicycliphilus denitrificans K601 carbon-monoxide dehydrogenase YP_004390149.1 4523006 R 596154 CDS YP_004390150.1 330826847 10485394 complement(4523537..4524415) 1 NC_015422.1 KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; carbon-monoxide dehydrogenase 4524415 10485394 Alide2_4322 Alicycliphilus denitrificans K601 carbon-monoxide dehydrogenase YP_004390150.1 4523537 R 596154 CDS YP_004390151.1 330826848 10485395 4524957..4525880 1 NC_015422.1 KEGG: cwo:Cwoe_3936 peptidase S15; peptidase S15 4525880 10485395 Alide2_4323 Alicycliphilus denitrificans K601 peptidase S15 YP_004390151.1 4524957 D 596154 CDS YP_004390152.1 330826849 10485396 4526102..4527013 1 NC_015422.1 KEGG: ctt:CtCNB1_3512 ATPase associated with various cellular; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core; ATPase 4527013 10485396 Alide2_4324 Alicycliphilus denitrificans K601 ATPase YP_004390152.1 4526102 D 596154 CDS YP_004390153.1 330826850 10485397 4527031..4527519 1 NC_015422.1 KEGG: dac:Daci_2252 VWA containing CoxE family protein; hypothetical protein 4527519 10485397 Alide2_4325 Alicycliphilus denitrificans K601 hypothetical protein YP_004390153.1 4527031 D 596154 CDS YP_004390154.1 330826851 10485398 4527537..4528088 1 NC_015422.1 PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G 4528088 10485398 Alide2_4326 Alicycliphilus denitrificans K601 carbon monoxide dehydrogenase subunit G YP_004390154.1 4527537 D 596154 CDS YP_004390155.1 330826852 10485399 4528091..4529131 1 NC_015422.1 PFAM: XdhC- CoxI; KEGG: pol:Bpro_0572 hypothetical protein; XshC-Cox1 family protein 4529131 10485399 Alide2_4327 Alicycliphilus denitrificans K601 XshC-Cox1 family protein YP_004390155.1 4528091 D 596154 CDS YP_004390156.1 330826853 10485400 4529131..4529805 1 NC_015422.1 KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase; molybdenum cofactor cytidylyltransferase 4529805 10485400 Alide2_4328 Alicycliphilus denitrificans K601 molybdenum cofactor cytidylyltransferase YP_004390156.1 4529131 D 596154 CDS YP_004390157.1 330826854 10485403 complement(4530134..4530856) 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cak:Caul_0225 TetR family transcriptional regulator; TetR family transcriptional regulator 4530856 10485403 Alide2_4331 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004390157.1 4530134 R 596154 CDS YP_004390158.1 330826855 10485404 complement(4530853..4531764) 1 NC_015422.1 KEGG: cti:RALTA_B1677 conserved hypothetical protein; UPF0065; hypothetical protein 4531764 10485404 Alide2_4332 Alicycliphilus denitrificans K601 hypothetical protein YP_004390158.1 4530853 R 596154 CDS YP_004390159.1 330826856 10485405 4532155..4533081 1 NC_015422.1 KEGG: cwo:Cwoe_3936 peptidase S15; peptidase S15 4533081 10485405 Alide2_4333 Alicycliphilus denitrificans K601 peptidase S15 YP_004390159.1 4532155 D 596154 CDS YP_004390160.1 330826857 10485406 4533148..4534941 1 NC_015422.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: slo:Shew_2868 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein 4534941 10485406 Alide2_4334 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase domain-containing protein YP_004390160.1 4533148 D 596154 CDS YP_004390161.1 330826858 10485407 4534938..4537037 1 NC_015422.1 manually curated; KEGG: xtr:100493475 peroxisomal bifunctional enzyme-like; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; 3-hydroxybutyryl-CoA epimerase 4537037 10485407 Alide2_4335 Alicycliphilus denitrificans K601 3-hydroxybutyryl-CoA epimerase YP_004390161.1 4534938 D 596154 CDS YP_004390162.1 330826859 10485408 4537034..4538221 1 NC_015422.1 TIGRFAM: Thiolase; KEGG: vap:Vapar_5357 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase 4538221 10485408 Alide2_4336 Alicycliphilus denitrificans K601 acetyl-CoA acetyltransferase YP_004390162.1 4537034 D 596154 CDS YP_004390163.1 330826860 10485409 4538218..4538991 1 NC_015422.1 KEGG: reu:Reut_C6403 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 4538991 10485409 Alide2_4337 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004390163.1 4538218 D 596154 CDS YP_004390164.1 330826861 10485410 4538982..4540586 1 NC_015422.1 KEGG: psa:PST_1119 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase 4540586 10485410 Alide2_4338 Alicycliphilus denitrificans K601 o-succinylbenzoate--CoA ligase YP_004390164.1 4538982 D 596154 CDS YP_004390165.1 330826862 10485411 4540583..4542118 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: azc:AZC_1416 sugar ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 4542118 10485411 Alide2_4339 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004390165.1 4540583 D 596154 CDS YP_004390166.1 330826863 10485412 4542120..4543064 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: reu:Reut_B4134 inner-membrane translocator; ABC transporter permease 4543064 10485412 Alide2_4340 Alicycliphilus denitrificans K601 ABC transporter permease YP_004390166.1 4542120 D 596154 CDS YP_004390167.1 330826864 10485413 4543061..4544011 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: reu:Reut_B4135 inner-membrane translocator; ABC transporter permease 4544011 10485413 Alide2_4341 Alicycliphilus denitrificans K601 ABC transporter permease YP_004390167.1 4543061 D 596154 CDS YP_004390168.1 330826865 10485414 4544051..4545031 1 NC_015422.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: azc:AZC_1419 ABC transporter sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator 4545031 10485414 Alide2_4342 Alicycliphilus denitrificans K601 periplasmic binding protein/LacI transcriptional regulator YP_004390168.1 4544051 D 596154 CDS YP_004390169.1 330826866 10485416 4545748..4547127 1 NC_015422.1 PFAM: Transposase, IS4-like; KEGG: pol:Bpro_1661 IS4 family transposase; transposase IS4 family protein 4547127 10485416 Alide2_4344 Alicycliphilus denitrificans K601 transposase IS4 family protein YP_004390169.1 4545748 D 596154 CDS YP_004390170.1 330826867 10485419 4550944..4551876 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; KEGG: tmz:Tmz1t_0371 integrase family protein; integrase family protein 4551876 10485419 Alide2_4348 Alicycliphilus denitrificans K601 integrase family protein YP_004390170.1 4550944 D 596154 CDS YP_004390171.1 330826868 10485420 4551873..4552868 1 NC_015422.1 PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: tmz:Tmz1t_0370 integrase family protein; integrase family protein 4552868 10485420 Alide2_4349 Alicycliphilus denitrificans K601 integrase family protein YP_004390171.1 4551873 D 596154 CDS YP_004390172.1 330826869 10485421 4553149..4554339 1 NC_015422.1 PFAM: Transposase, IS801/IS1294; KEGG: pol:Bpro_4805 putative transposase; transposase 4554339 10485421 Alide2_4350 Alicycliphilus denitrificans K601 transposase YP_004390172.1 4553149 D 596154 CDS YP_004390173.1 330826870 10485423 complement(4554939..4555328) 1 NC_015422.1 TIGRFAM: Ribosomal protein L17; HAMAP: Ribosomal protein L17; KEGG: dia:Dtpsy_0399 50S ribosomal protein L17; PFAM: Ribosomal protein L17; 50S ribosomal protein L17 4555328 10485423 Alide2_4351 Alicycliphilus denitrificans K601 50S ribosomal protein L17 YP_004390173.1 4554939 R 596154 CDS YP_004390174.1 330826871 10485424 complement(4555417..4556412) 1 NC_015422.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase, alpha subunit, C-terminal; DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; KEGG: dia:Dtpsy_0398 DNA-directed RNA polymerase subunit alpha; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 4556412 10485424 Alide2_4352 Alicycliphilus denitrificans K601 DNA-directed RNA polymerase subunit alpha YP_004390174.1 4555417 R 596154 CDS YP_004390175.1 330826872 10485425 complement(4556525..4557199) 1 NC_015422.1 TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4/S9, N-terminal; RNA-binding S4; KEGG: aav:Aave_0625 30S ribosomal protein S4; SMART: RNA-binding S4; 30S ribosomal protein S4 4557199 10485425 Alide2_4353 Alicycliphilus denitrificans K601 30S ribosomal protein S4 YP_004390175.1 4556525 R 596154 CDS YP_004390176.1 330826873 10485426 complement(4557240..4557644) 1 NC_015422.1 KEGG: aav:Aave_0624 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11; 30S ribosomal protein S11 4557644 10485426 Alide2_4354 Alicycliphilus denitrificans K601 30S ribosomal protein S11 YP_004390176.1 4557240 R 596154 CDS YP_004390177.1 330826874 10485427 complement(4557660..4558025) 1 NC_015422.1 KEGG: dia:Dtpsy_0395 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13; 30S ribosomal protein S13 4558025 10485427 Alide2_4355 Alicycliphilus denitrificans K601 30S ribosomal protein S13 YP_004390177.1 4557660 R 596154 CDS YP_004390178.1 330826875 10485428 complement(4558049..4558162) 1 NC_015422.1 TIGRFAM: Ribosomal protein L36; HAMAP: Ribosomal protein L36; KEGG: ctt:CtCNB1_4432 ribosomal protein L36; PFAM: Ribosomal protein L36; 50S ribosomal protein L36 4558162 10485428 Alide2_4356 Alicycliphilus denitrificans K601 50S ribosomal protein L36 YP_004390178.1 4558049 R 596154 CDS YP_004390179.1 330826876 10485429 complement(4558310..4559629) 1 NC_015422.1 manually curated; TIGRFAM: SecY protein; KEGG: dia:Dtpsy_0393 preprotein translocase subunit SecY; PFAM: SecY protein; preprotein translocase subunit SecY 4559629 10485429 Alide2_4357 Alicycliphilus denitrificans K601 preprotein translocase subunit SecY YP_004390179.1 4558310 R 596154 CDS YP_004390180.1 330826877 10485430 complement(4559653..4560084) 1 NC_015422.1 KEGG: ctt:CtCNB1_4434 ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L18e/L15; 50S ribosomal protein L15 4560084 10485430 Alide2_4358 Alicycliphilus denitrificans K601 50S ribosomal protein L15 YP_004390180.1 4559653 R 596154 CDS YP_004390181.1 330826878 10485431 complement(4560095..4560277) 1 NC_015422.1 KEGG: dia:Dtpsy_0391 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30, ferredoxin-like fold domain; 50S ribosomal protein L30 4560277 10485431 Alide2_4359 Alicycliphilus denitrificans K601 50S ribosomal protein L30 YP_004390181.1 4560095 R 596154 CDS YP_004390182.1 330826879 10485432 complement(4560290..4560811) 1 NC_015422.1 KEGG: dia:Dtpsy_0390 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal; 30S ribosomal protein S5 4560811 10485432 Alide2_4360 Alicycliphilus denitrificans K601 30S ribosomal protein S5 YP_004390182.1 4560290 R 596154 CDS YP_004390183.1 330826880 10485433 complement(4560827..4561192) 1 NC_015422.1 KEGG: dia:Dtpsy_0389 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5; 50S ribosomal protein L18 4561192 10485433 Alide2_4361 Alicycliphilus denitrificans K601 50S ribosomal protein L18 YP_004390183.1 4560827 R 596154 CDS YP_004390184.1 330826881 10485434 complement(4561204..4561737) 1 NC_015422.1 KEGG: dia:Dtpsy_0388 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 4561737 10485434 Alide2_4362 Alicycliphilus denitrificans K601 50S ribosomal protein L6 YP_004390184.1 4561204 R 596154 CDS YP_004390185.1 330826882 10485435 complement(4561762..4562157) 1 NC_015422.1 PFAM: Ribosomal protein S8; KEGG: aav:Aave_0615 30S ribosomal protein S8; 30S ribosomal protein S8 4562157 10485435 Alide2_4363 Alicycliphilus denitrificans K601 30S ribosomal protein S8 YP_004390185.1 4561762 R 596154 CDS YP_004390186.1 330826883 10485436 complement(4562179..4562484) 1 NC_015422.1 KEGG: dia:Dtpsy_0386 30S ribosomal protein S14; HAMAP: Ribosomal protein S14, bacterial/plastid; PFAM: Ribosomal protein S14; 30S ribosomal protein S14 4562484 10485436 Alide2_4364 Alicycliphilus denitrificans K601 30S ribosomal protein S14 YP_004390186.1 4562179 R 596154 CDS YP_004390187.1 330826884 10485437 complement(4562494..4563033) 1 NC_015422.1 PFAM: Ribosomal protein L5; KEGG: dia:Dtpsy_0385 50S ribosomal protein L5; 50S ribosomal protein L5 4563033 10485437 Alide2_4365 Alicycliphilus denitrificans K601 50S ribosomal protein L5 YP_004390187.1 4562494 R 596154 CDS YP_004390188.1 330826885 10485438 complement(4563043..4563363) 1 NC_015422.1 TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: dia:Dtpsy_0384 50S ribosomal protein L24; SMART: KOW; 50S ribosomal protein L24 4563363 10485438 Alide2_4366 Alicycliphilus denitrificans K601 50S ribosomal protein L24 YP_004390188.1 4563043 R 596154 CDS YP_004390189.1 330826886 10485439 complement(4563374..4563742) 1 NC_015422.1 KEGG: dia:Dtpsy_0383 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e; 50S ribosomal protein L14 4563742 10485439 Alide2_4367 Alicycliphilus denitrificans K601 50S ribosomal protein L14 YP_004390189.1 4563374 R 596154 CDS YP_004390190.1 330826887 10485440 complement(4563950..4565548) 1 NC_015422.1 KEGG: aav:Aave_0610 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase 4565548 10485440 Alide2_4368 Alicycliphilus denitrificans K601 glycerol-3-phosphate dehydrogenase YP_004390190.1 4563950 R 596154 CDS YP_004390191.1 330826888 10485441 4565671..4566432 1 NC_015422.1 KEGG: ajs:Ajs_0383 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; DeoR family transcriptional regulator 4566432 10485441 Alide2_4369 Alicycliphilus denitrificans K601 DeoR family transcriptional regulator YP_004390191.1 4565671 D 596154 CDS YP_004390192.1 330826889 10485442 4566454..4567959 1 NC_015422.1 PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; TIGRFAM: Glycerol kinase; HAMAP: Glycerol kinase; KEGG: dia:Dtpsy_0373 glycerol kinase; glycerol kinase 4567959 10485442 Alide2_4370 Alicycliphilus denitrificans K601 glycerol kinase YP_004390192.1 4566454 D 596154 CDS YP_004390193.1 330826890 10485443 4568116..4568955 1 NC_015422.1 TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: dia:Dtpsy_0372 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 4568955 10485443 Alide2_4371 Alicycliphilus denitrificans K601 pyrroline-5-carboxylate reductase YP_004390193.1 4568116 D 596154 CDS YP_004390194.1 330826891 10485444 4569055..4570830 1 NC_015422.1 PFAM: Spore coat protein CotH; KEGG: glo:Glov_2109 spore coat protein CotH; spore coat protein CotH 4570830 10485444 Alide2_4372 Alicycliphilus denitrificans K601 spore coat protein CotH YP_004390194.1 4569055 D 596154 CDS YP_004390195.1 330826892 10485445 complement(4570837..4571709) 1 NC_015422.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate polyprenyl transferase; KEGG: dia:Dtpsy_0371 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate octaprenyltransferase 4571709 10485445 Alide2_4373 Alicycliphilus denitrificans K601 4-hydroxybenzoate octaprenyltransferase YP_004390195.1 4570837 R 596154 CDS YP_004390196.1 330826893 10485447 complement(4574381..4574920) 1 NC_015422.1 PFAM: Ferritin/Dps protein; KEGG: dia:Dtpsy_0369 ferritin Dps family protein; ferritin Dps family protein 4574920 10485447 Alide2_4375 Alicycliphilus denitrificans K601 ferritin Dps family protein YP_004390196.1 4574381 R 596154 CDS YP_004390197.1 330826894 10485448 complement(4575020..4575985) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0368 transcriptional regulator, LysR family; LysR family transcriptional regulator 4575985 10485448 Alide2_4376 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390197.1 4575020 R 596154 CDS YP_004390198.1 330826895 10485449 complement(4576031..4578148) 1 NC_015422.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: ajs:Ajs_0376 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; ATP-dependent DNA helicase RecG 4578148 10485449 Alide2_4377 Alicycliphilus denitrificans K601 ATP-dependent DNA helicase RecG YP_004390198.1 4576031 R 596154 CDS YP_004390199.1 330826896 10485450 4578325..4579590 1 NC_015422.1 TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: dia:Dtpsy_0366 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase 4579590 10485450 Alide2_4378 Alicycliphilus denitrificans K601 metal dependent phosphohydrolase YP_004390199.1 4578325 D 596154 CDS YP_004390200.1 330826897 10485451 4579679..4580782 1 NC_015422.1 KEGG: dia:Dtpsy_0365 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 4580782 10485451 Alide2_4379 Alicycliphilus denitrificans K601 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_004390200.1 4579679 D 596154 CDS YP_004390201.1 330826898 10485452 4580931..4581812 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0373 hypothetical protein; hypothetical protein 4581812 10485452 Alide2_4380 Alicycliphilus denitrificans K601 hypothetical protein YP_004390201.1 4580931 D 596154 CDS YP_004390202.1 330826899 10485453 complement(4581871..4583478) 1 NC_015422.1 KEGG: ctt:CtCNB1_4698 gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase; gamma-glutamyltransferase 4583478 10485453 Alide2_4381 Alicycliphilus denitrificans K601 gamma-glutamyltransferase YP_004390202.1 4581871 R 596154 CDS YP_004390203.1 330826900 10485454 complement(4583484..4584446) 1 NC_015422.1 KEGG: vei:Veis_0179 hypothetical protein; hypothetical protein 4584446 10485454 Alide2_4382 Alicycliphilus denitrificans K601 hypothetical protein YP_004390203.1 4583484 R 596154 CDS YP_004390204.1 330826901 10485455 4584573..4585478 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_0178 LysR family transcriptional regulator; LysR family transcriptional regulator 4585478 10485455 Alide2_4383 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390204.1 4584573 D 596154 CDS YP_004390205.1 330826902 10485456 complement(4585487..4586203) 1 NC_015422.1 TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: dia:Dtpsy_0363 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; uracil-DNA glycosylase 4586203 10485456 Alide2_4384 Alicycliphilus denitrificans K601 uracil-DNA glycosylase YP_004390205.1 4585487 R 596154 CDS YP_004390206.1 330826903 10485457 complement(4586264..4587064) 1 NC_015422.1 KEGG: dia:Dtpsy_0361 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; indole-3-glycerol-phosphate synthase 4587064 10485457 Alide2_4385 Alicycliphilus denitrificans K601 indole-3-glycerol-phosphate synthase YP_004390206.1 4586264 R 596154 CDS YP_004390207.1 330826904 10485458 complement(4587071..4587223) 1 NC_015422.1 KEGG: ctt:CtCNB1_4464 hypothetical protein; hypothetical protein 4587223 10485458 Alide2_4386 Alicycliphilus denitrificans K601 hypothetical protein YP_004390207.1 4587071 R 596154 CDS YP_004390208.1 330826905 10485459 complement(4587220..4588254) 1 NC_015422.1 PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: dia:Dtpsy_0359 anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase 4588254 10485459 Alide2_4387 Alicycliphilus denitrificans K601 anthranilate phosphoribosyltransferase YP_004390208.1 4587220 R 596154 CDS YP_004390209.1 330826906 10485460 complement(4588251..4588823) 1 NC_015422.1 TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: dia:Dtpsy_0358 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal; glutamine amidotransferase of anthranilate synthase 4588823 10485460 Alide2_4388 Alicycliphilus denitrificans K601 glutamine amidotransferase of anthranilate synthase YP_004390209.1 4588251 R 596154 CDS YP_004390210.1 330826907 10485461 complement(4589621..4590535) 1 NC_015422.1 PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit 4590535 10485461 Alide2_4389 Alicycliphilus denitrificans K601 integrase catalytic subunit YP_004390210.1 4589621 R 596154 CDS YP_004390211.1 330826908 10485462 complement(4590532..4590855) 1 NC_015422.1 PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4590855 10485462 Alide2_4390 Alicycliphilus denitrificans K601 transposase IS3/IS911 family protein YP_004390211.1 4590532 R 596154 CDS YP_004390212.1 330826909 10485463 4590986..4591186 1 NC_015422.1 hypothetical protein 4591186 10485463 Alide2_4391 Alicycliphilus denitrificans K601 hypothetical protein YP_004390212.1 4590986 D 596154 CDS YP_004390213.1 330826910 10485464 complement(4591168..4591716) 1 NC_015422.1 KEGG: avn:Avin_32410 hypothetical protein; PFAM: RES; SMART: RES; RES domain-containing protein 4591716 10485464 Alide2_4392 Alicycliphilus denitrificans K601 RES domain-containing protein YP_004390213.1 4591168 R 596154 CDS YP_004390214.1 330826911 10485465 complement(4591713..4592084) 1 NC_015422.1 KEGG: avn:Avin_32400 hypothetical protein; hypothetical protein 4592084 10485465 Alide2_4393 Alicycliphilus denitrificans K601 hypothetical protein YP_004390214.1 4591713 R 596154 CDS YP_004390215.1 330826912 10485466 complement(4592399..4592740) 1 NC_015422.1 KEGG: dia:Dtpsy_0357 chorismate mutase; PFAM: Chorismate mutase, type II; SMART: Chorismate mutase; Chorismate mutase 4592740 10485466 Alide2_4394 Alicycliphilus denitrificans K601 Chorismate mutase YP_004390215.1 4592399 R 596154 CDS YP_004390216.1 330826913 10485467 complement(4592737..4594236) 1 NC_015422.1 TIGRFAM: Anthranilate synthase component I, PabB-like; KEGG: dia:Dtpsy_0356 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; anthranilate synthase component I 4594236 10485467 Alide2_4395 Alicycliphilus denitrificans K601 anthranilate synthase component I YP_004390216.1 4592737 R 596154 CDS YP_004390217.1 330826914 10485468 4594579..4596339 1 NC_015422.1 KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 4596339 10485468 Alide2_4396 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004390217.1 4594579 D 596154 CDS YP_004390218.1 330826915 10485469 4596502..4599267 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; HAMP linker domain; KEGG: slt:Slit_0879 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; HAMP linker domain; PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4599267 10485469 Alide2_4397 Alicycliphilus denitrificans K601 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_004390218.1 4596502 D 596154 CDS YP_004390219.1 330826916 10485470 complement(4599206..4599958) 1 NC_015422.1 TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: dia:Dtpsy_0352 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase 4599958 10485470 Alide2_4398 Alicycliphilus denitrificans K601 phosphoglycolate phosphatase YP_004390219.1 4599206 R 596154 CDS YP_004390220.1 330826917 10485471 4600147..4600521 1 NC_015422.1 KEGG: ajs:Ajs_0362 hypothetical protein; hypothetical protein 4600521 10485471 Alide2_4399 Alicycliphilus denitrificans K601 hypothetical protein YP_004390220.1 4600147 D 596154 CDS YP_004390221.1 330826918 10485472 complement(4600538..4601218) 1 NC_015422.1 TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: dia:Dtpsy_0350 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 4601218 10485472 Alide2_4400 Alicycliphilus denitrificans K601 ribulose-phosphate 3-epimerase YP_004390221.1 4600538 R 596154 CDS YP_004390222.1 330826919 10485473 4601267..4601674 1 NC_015422.1 KEGG: dia:Dtpsy_0349 ApaG; HAMAP: Uncharacterised protein family ApaG; PFAM: ApaG domain; protein ApaG 4601674 10485473 Alide2_4401 Alicycliphilus denitrificans K601 protein ApaG YP_004390222.1 4601267 D 596154 CDS YP_004390223.1 330826920 10485474 4601671..4603659 1 NC_015422.1 PFAM: Site-specific recombinase Gcr; KEGG: ajs:Ajs_0359 putative site-specific recombinase transmembrane protein; site-specific recombinase Gcr 4603659 10485474 Alide2_4402 Alicycliphilus denitrificans K601 site-specific recombinase Gcr YP_004390223.1 4601671 D 596154 CDS YP_004390224.1 330826921 10485475 4603829..4605094 1 NC_015422.1 PFAM: Cation/H+ exchanger; KEGG: dia:Dtpsy_0347 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4605094 10485475 Alide2_4403 Alicycliphilus denitrificans K601 sodium/hydrogen exchanger YP_004390224.1 4603829 D 596154 CDS YP_004390225.1 330826922 10485476 4605084..4606208 1 NC_015422.1 TIGRFAM: Carboxylate-amine ligase, predicted; HAMAP: Carboxylate-amine ligase, predicted; KEGG: dia:Dtpsy_0346 carboxylate-amine ligase; PFAM: Glutamate--cysteine ligase, GCS2; carboxylate-amine ligase ybdK 4606208 10485476 Alide2_4404 Alicycliphilus denitrificans K601 carboxylate-amine ligase ybdK YP_004390225.1 4605084 D 596154 CDS YP_004390226.1 330826923 10485477 4606211..4607197 1 NC_015422.1 TIGRFAM: Thiamine-monophosphate kinase; KEGG: xtr:100495996 thiamine-monophosphate kinase-like; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal; thiamine-monophosphate kinase 4607197 10485477 Alide2_4405 Alicycliphilus denitrificans K601 thiamine-monophosphate kinase YP_004390226.1 4606211 D 596154 CDS YP_004390227.1 330826924 10485478 complement(4607182..4607634) 1 NC_015422.1 KEGG: rfr:Rfer_2221 hypothetical protein; hypothetical protein 4607634 10485478 Alide2_4406 Alicycliphilus denitrificans K601 hypothetical protein YP_004390227.1 4607182 R 596154 CDS YP_004390228.1 330826925 10485479 4607738..4608214 1 NC_015422.1 KEGG: har:HEAR3117 putative type 4 fimbrial biogenesis transmembrane protein; type 4 fimbrial biogenesis transmembrane protein 4608214 10485479 Alide2_4407 Alicycliphilus denitrificans K601 type 4 fimbrial biogenesis transmembrane protein YP_004390228.1 4607738 D 596154 CDS YP_004390229.1 330826926 10485480 4608229..4608843 1 NC_015422.1 KEGG: lch:Lcho_2905 Tfp pilus assembly protein FimT; Tfp pilus assembly protein FimT 4608843 10485480 Alide2_4408 Alicycliphilus denitrificans K601 Tfp pilus assembly protein FimT YP_004390229.1 4608229 D 596154 CDS YP_004390230.1 330826927 10485481 4608864..4609319 1 NC_015422.1 TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: lch:Lcho_2906 hypothetical protein; type IV pilus modification protein PilV 4609319 10485481 Alide2_4409 Alicycliphilus denitrificans K601 type IV pilus modification protein PilV YP_004390230.1 4608864 D 596154 CDS YP_004390231.1 330826928 10485482 4609316..4610401 1 NC_015422.1 KEGG: lch:Lcho_2907 type IV pilus assembly protein PilW; type IV pilus assembly protein PilW 4610401 10485482 Alide2_4410 Alicycliphilus denitrificans K601 type IV pilus assembly protein PilW YP_004390231.1 4609316 D 596154 CDS YP_004390232.1 330826929 10485483 4610386..4611066 1 NC_015422.1 KEGG: lch:Lcho_2908 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 4611066 10485483 Alide2_4411 Alicycliphilus denitrificans K601 type IV pilus assembly protein PilX YP_004390232.1 4610386 D 596154 CDS YP_004390233.1 330826930 10485484 4611144..4614704 1 NC_015422.1 KEGG: mep:MPQ_2531 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; pyrrolo-quinoline quinone repeat-containing protein 4614704 10485484 Alide2_4412 Alicycliphilus denitrificans K601 pyrrolo-quinoline quinone repeat-containing protein YP_004390233.1 4611144 D 596154 CDS YP_004390234.1 330826931 10485485 complement(4614750..4615439) 1 NC_015422.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: axy:AXYL_05659 TetR family regulatory protein 27; TetR family transcriptional regulator 4615439 10485485 Alide2_4413 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004390234.1 4614750 R 596154 CDS YP_004390235.1 330826932 10485486 4615598..4617340 1 NC_015422.1 PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; KEGG: eba:ebA5073 putative poly-beta-hydroxyalkanoate synthase; poly-beta-hydroxybutyrate polymerase domain-containing protein 4617340 10485486 Alide2_4414 Alicycliphilus denitrificans K601 poly-beta-hydroxybutyrate polymerase domain-containing protein YP_004390235.1 4615598 D 596154 CDS YP_004390236.1 330826933 10485487 4617337..4618110 1 NC_015422.1 KEGG: aav:Aave_2051 enoyl-(acyl carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; enoyl-ACP reductase (NADH) 4618110 10485487 Alide2_4415 Alicycliphilus denitrificans K601 enoyl-ACP reductase (NADH) YP_004390236.1 4617337 D 596154 CDS YP_004390237.1 330826934 10485488 4618115..4619569 1 NC_015422.1 KEGG: har:HEAR2593 putative outer membrane transport protein involved in copper (silver) tolerance (CusC); TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 4619569 10485488 Alide2_4416 Alicycliphilus denitrificans K601 NodT family RND efflux system outer membrane lipoprotein YP_004390237.1 4618115 D 596154 CDS YP_004390238.1 330826935 10485489 4619566..4620636 1 NC_015422.1 PFAM: Secretion protein HlyD; KEGG: axy:AXYL_05661 HlyD family secretion family protein 5; secretion protein HlyD family protein 4620636 10485489 Alide2_4417 Alicycliphilus denitrificans K601 secretion protein HlyD family protein YP_004390238.1 4619566 D 596154 CDS YP_004390239.1 330826936 10485490 4620633..4623371 1 NC_015422.1 PFAM: ABC transporter-like; ABC-2 type transporter; KEGG: ajs:Ajs_2361 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 4623371 10485490 Alide2_4418 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004390239.1 4620633 D 596154 CDS YP_004390240.1 330826937 10485491 4623376..4624512 1 NC_015422.1 PFAM: ABC-2 type transporter; KEGG: bav:BAV1815 ABC transporter, permease protein; ABC transporter 4624512 10485491 Alide2_4419 Alicycliphilus denitrificans K601 ABC transporter YP_004390240.1 4623376 D 596154 CDS YP_004390241.1 330826938 10485492 4624590..4626029 1 NC_015422.1 KEGG: rpf:Rpic12D_4426 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; MaoC-like dehydratase; phosphate acetyltransferase 4626029 10485492 Alide2_4420 Alicycliphilus denitrificans K601 phosphate acetyltransferase YP_004390241.1 4624590 D 596154 CDS YP_004390242.1 330826939 10485493 4626026..4627216 1 NC_015422.1 TIGRFAM: Acetate kinase; KEGG: har:HEAR1515 acetate kinase (acetokinase); PFAM: Acetate/butyrate kinase; acetate kinase 4627216 10485493 Alide2_4421 Alicycliphilus denitrificans K601 acetate kinase YP_004390242.1 4626026 D 596154 CDS YP_004390243.1 330826940 10485494 4627294..4627821 1 NC_015422.1 PFAM: Phosphatidylglycerophosphatase A; KEGG: dia:Dtpsy_0344 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 4627821 10485494 Alide2_4422 Alicycliphilus denitrificans K601 phosphatidylglycerophosphatase A YP_004390243.1 4627294 D 596154 CDS YP_004390244.1 330826941 10485495 4627828..4628346 1 NC_015422.1 KEGG: ajs:Ajs_0354 CinA domain-containing protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal; CinA domain-containing protein 4628346 10485495 Alide2_4423 Alicycliphilus denitrificans K601 CinA domain-containing protein YP_004390244.1 4627828 D 596154 CDS YP_004390245.1 330826942 10485496 complement(4628359..4629987) 1 NC_015422.1 KEGG: lch:Lcho_3216 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 4629987 10485496 Alide2_4424 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004390245.1 4628359 R 596154 CDS YP_004390246.1 330826943 10485497 complement(4629990..4632230) 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; HAMP linker domain; KEGG: slt:Slit_1460 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; HAMP linker domain; extracellular sensor-containing diguanylate cyclase/phosphodiesterase 4632230 10485497 Alide2_4425 Alicycliphilus denitrificans K601 extracellular sensor-containing diguanylate cyclase/phosphodiesterase YP_004390246.1 4629990 R 596154 CDS YP_004390247.1 330826944 10485498 complement(4632508..4633113) 1 NC_015422.1 KEGG: nhl:Nhal_1312 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; ANTAR; SMART: Signal transduction response regulator, receiver domain; response regulator receiver and ANTAR domain-containing protein 4633113 10485498 Alide2_4426 Alicycliphilus denitrificans K601 response regulator receiver and ANTAR domain-containing protein YP_004390247.1 4632508 R 596154 CDS YP_004390248.1 330826945 10485499 complement(4633110..4634546) 1 NC_015422.1 KEGG: lch:Lcho_2722 putative signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; PAS fold-4; ATPase-like, ATP-binding domain; signal transduction histidine kinase 4634546 10485499 Alide2_4427 Alicycliphilus denitrificans K601 signal transduction histidine kinase YP_004390248.1 4633110 R 596154 CDS YP_004390249.1 330826946 10485500 complement(4634849..4635664) 1 NC_015422.1 PFAM: SEC-C motif; KEGG: dia:Dtpsy_0342 sec-C motif domain protein; SEC-C motif domain-containing protein 4635664 10485500 Alide2_4428 Alicycliphilus denitrificans K601 SEC-C motif domain-containing protein YP_004390249.1 4634849 R 596154 CDS YP_004390250.1 330826947 10485502 complement(4636097..4636582) 1 NC_015422.1 KEGG: dia:Dtpsy_0340 hypothetical protein; TIGRFAM: Protein of unknown function DUF132; SMART: Nucleotide binding protein, PINc; hypothetical protein 4636582 10485502 Alide2_4430 Alicycliphilus denitrificans K601 hypothetical protein YP_004390250.1 4636097 R 596154 CDS YP_004390251.1 330826948 10485503 complement(4636572..4637840) 1 NC_015422.1 PFAM: Putative RNA methylase; THUMP; KEGG: ajs:Ajs_0350 putative RNA methylase; SMART: THUMP; rRNA (guanine-N(2)-)-methyltransferase 4637840 10485503 Alide2_4431 Alicycliphilus denitrificans K601 rRNA (guanine-N(2)-)-methyltransferase YP_004390251.1 4636572 R 596154 CDS YP_004390252.1 330826949 10485504 4637953..4639776 1 NC_015422.1 KEGG: aav:Aave_0421 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 4639776 10485504 Alide2_4432 Alicycliphilus denitrificans K601 Cache sensor-containing methyl-accepting chemotaxis sensory transducer YP_004390252.1 4637953 D 596154 CDS YP_004390253.1 330826950 10485505 complement(4639778..4640221) 1 NC_015422.1 KEGG: ajs:Ajs_0349 hypothetical protein; hypothetical protein 4640221 10485505 Alide2_4433 Alicycliphilus denitrificans K601 hypothetical protein YP_004390253.1 4639778 R 596154 CDS YP_004390254.1 330826951 10485506 complement(4640235..4641788) 1 NC_015422.1 KEGG: dia:Dtpsy_0337 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; RNA polymerase sigma-54 subunit RpoN 4641788 10485506 Alide2_4434 Alicycliphilus denitrificans K601 RNA polymerase sigma-54 subunit RpoN YP_004390254.1 4640235 R 596154 CDS YP_004390255.1 330826952 10485507 complement(4641838..4642638) 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: aav:Aave_0418 ABC transporter-related protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase 4642638 10485507 Alide2_4435 Alicycliphilus denitrificans K601 sulfate-transporting ATPase YP_004390255.1 4641838 R 596154 CDS YP_004390256.1 330826953 10485508 complement(4642635..4643279) 1 NC_015422.1 KEGG: dia:Dtpsy_0335 lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: Lipopolysccharide assembly, LptA; PFAM: Organic solvent tolerance-like, N-terminal; lipopolysaccharide transport periplasmic protein LptA 4643279 10485508 Alide2_4436 Alicycliphilus denitrificans K601 lipopolysaccharide transport periplasmic protein LptA YP_004390256.1 4642635 R 596154 CDS YP_004390257.1 330826954 10485509 complement(4643399..4644055) 1 NC_015422.1 PFAM: DSBA-like thioredoxin domain; KEGG: dia:Dtpsy_0334 DsbA oxidoreductase; DSBA oxidoreductase 4644055 10485509 Alide2_4437 Alicycliphilus denitrificans K601 DSBA oxidoreductase YP_004390257.1 4643399 R 596154 CDS YP_004390258.1 330826955 10485510 complement(4644135..4644770) 1 NC_015422.1 PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_0333 sporulation domain protein; sporulation domain-containing protein 4644770 10485510 Alide2_4438 Alicycliphilus denitrificans K601 sporulation domain-containing protein YP_004390258.1 4644135 R 596154 CDS YP_004390259.1 330826956 10485511 complement(4644783..4646486) 1 NC_015422.1 TIGRFAM: Arginyl-tRNA synthetase, class Ic; KEGG: ajs:Ajs_0343 arginyl-tRNA synthetase; arginyl-tRNA synthetase 4646486 10485511 Alide2_4439 Alicycliphilus denitrificans K601 arginyl-tRNA synthetase YP_004390259.1 4644783 R 596154 CDS YP_004390260.1 330826957 10485512 4646611..4646937 1 NC_015422.1 PFAM: Phosphate-starvation-induced PsiF repeat; KEGG: dia:Dtpsy_0331 PsiF repeat protein; PsiF repeat-containing protein 4646937 10485512 Alide2_4440 Alicycliphilus denitrificans K601 PsiF repeat-containing protein YP_004390260.1 4646611 D 596154 CDS YP_004390261.1 330826958 10485513 complement(4646995..4647450) 1 NC_015422.1 PFAM: Protein of unknown function DUF2214, membrane; KEGG: ajs:Ajs_0341 putative transmembrane protein; hypothetical protein 4647450 10485513 Alide2_4441 Alicycliphilus denitrificans K601 hypothetical protein YP_004390261.1 4646995 R 596154 CDS YP_004390262.1 330826959 10485514 complement(4647544..4648881) 1 NC_015422.1 KEGG: dac:Daci_2923 sodium:dicarboxylate symporter; HAMAP: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter; C4-dicarboxylate transport protein 4648881 10485514 Alide2_4442 Alicycliphilus denitrificans K601 C4-dicarboxylate transport protein YP_004390262.1 4647544 R 596154 CDS YP_004390263.1 330826960 10485515 4649081..4651741 1 NC_015422.1 KEGG: dac:Daci_2922 PAS/PAC sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; PAS/PAC sensor hybrid histidine kinase 4651741 10485515 Alide2_4443 Alicycliphilus denitrificans K601 PAS/PAC sensor hybrid histidine kinase YP_004390263.1 4649081 D 596154 CDS YP_004390264.1 330826961 10485516 complement(4651807..4652445) 1 NC_015422.1 KEGG: dac:Daci_2921 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; two component LuxR family transcriptional regulator 4652445 10485516 Alide2_4444 Alicycliphilus denitrificans K601 two component LuxR family transcriptional regulator YP_004390264.1 4651807 R 596154 CDS YP_004390265.1 330826962 10485517 complement(4652459..4653391) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0328 transcriptional regulator, LysR family; LysR family transcriptional regulator 4653391 10485517 Alide2_4445 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390265.1 4652459 R 596154 CDS YP_004390266.1 330826963 10485518 4653626..4655824 1 NC_015422.1 TIGRFAM: Malate synthase G; KEGG: dia:Dtpsy_0327 malate synthase G; PFAM: Malate synthase; malate synthase G 4655824 10485518 Alide2_4446 Alicycliphilus denitrificans K601 malate synthase G YP_004390266.1 4653626 D 596154 CDS YP_004390267.1 330826964 10485519 4655901..4656185 1 NC_015422.1 manually curated; KEGG: ajs:Ajs_0337 hypothetical protein; hypothetical protein 4656185 10485519 Alide2_4447 Alicycliphilus denitrificans K601 hypothetical protein YP_004390267.1 4655901 D 596154 CDS YP_004390268.1 330826965 10485520 4656161..4656349 1 NC_015422.1 KEGG: dia:Dtpsy_0325 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase, bacteria/archaea; PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 4656349 10485520 Alide2_4448 Alicycliphilus denitrificans K601 4-oxalocrotonate tautomerase YP_004390268.1 4656161 D 596154 CDS YP_004390269.1 330826966 10485521 4656372..4657160 1 NC_015422.1 PFAM: Protein of unknown function DUF169; KEGG: bbt:BBta_4610 hypothetical protein; hypothetical protein 4657160 10485521 Alide2_4449 Alicycliphilus denitrificans K601 hypothetical protein YP_004390269.1 4656372 D 596154 CDS YP_004390270.1 330826967 10485522 4657185..4657952 1 NC_015422.1 PFAM: Glutamine amidotransferase, class-II; KEGG: ajs:Ajs_0335 glutamine amidotransferase, class-II; glutamine amidotransferase 4657952 10485522 Alide2_4450 Alicycliphilus denitrificans K601 glutamine amidotransferase YP_004390270.1 4657185 D 596154 CDS YP_004390271.1 330826968 10485528 complement(4663791..4664810) 1 NC_015422.1 TIGRFAM: Glutathione synthetase, prokaryotic; KEGG: dia:Dtpsy_3256 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; glutathione synthetase 4664810 10485528 Alide2_4451 Alicycliphilus denitrificans K601 glutathione synthetase YP_004390271.1 4663791 R 596154 CDS YP_004390272.1 330826969 10485529 complement(4664770..4666011) 1 NC_015422.1 KEGG: dia:Dtpsy_3257 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein; benzoate transporter 4666011 10485529 Alide2_4452 Alicycliphilus denitrificans K601 benzoate transporter YP_004390272.1 4664770 R 596154 CDS YP_004390273.1 330826970 10485530 complement(4666103..4667974) 1 NC_015422.1 KEGG: aav:Aave_4541 K+ potassium transporter; HAMAP: Potassium uptake protein, low affinity, Kup; PFAM: K+ potassium transporter; Low affinity potassium transport system protein kup 4667974 10485530 Alide2_4453 Alicycliphilus denitrificans K601 Low affinity potassium transport system protein kup YP_004390273.1 4666103 R 596154 CDS YP_004390274.1 330826971 10485531 complement(4668070..4669413) 1 NC_015422.1 KEGG: dia:Dtpsy_3259 glutamate/cysteine ligase; TIGRFAM: Glutamate--cysteine ligase GshA; PFAM: Glutamate--cysteine ligase GshA; glutamate/cysteine ligase 4669413 10485531 Alide2_4454 Alicycliphilus denitrificans K601 glutamate/cysteine ligase YP_004390274.1 4668070 R 596154 CDS YP_004390275.1 330826972 10485532 complement(4669433..4670899) 1 NC_015422.1 PFAM: Cation transporter; KEGG: dac:Daci_5998 cation transporter; cation transporter 4670899 10485532 Alide2_4455 Alicycliphilus denitrificans K601 cation transporter YP_004390275.1 4669433 R 596154 CDS YP_004390276.1 330826973 10485533 complement(4670901..4672376) 1 NC_015422.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: dia:Dtpsy_3261 potassium transporter peripheral membrane component; TrkA-N domain-containing protein 4672376 10485533 Alide2_4456 Alicycliphilus denitrificans K601 TrkA-N domain-containing protein YP_004390276.1 4670901 R 596154 CDS YP_004390277.1 330826974 10485534 complement(4672437..4673771) 1 NC_015422.1 PFAM: Aldehyde dehydrogenase domain; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: ajs:Ajs_3913 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 4673771 10485534 Alide2_4457 Alicycliphilus denitrificans K601 gamma-glutamyl phosphate reductase YP_004390277.1 4672437 R 596154 CDS YP_004390278.1 330826975 10485535 complement(4673789..4674124) 1 NC_015422.1 hypothetical protein 4674124 10485535 Alide2_4458 Alicycliphilus denitrificans K601 hypothetical protein YP_004390278.1 4673789 R 596154 CDS YP_004390279.1 330826976 10485536 complement(4674066..4675127) 1 NC_015422.1 KEGG: ank:AnaeK_1753 RimK domain protein ATP-grasp; RimK domain-containing protein ATP-grasp 4675127 10485536 Alide2_4459 Alicycliphilus denitrificans K601 RimK domain-containing protein ATP-grasp YP_004390279.1 4674066 R 596154 CDS YP_004390280.1 330826977 10485537 complement(4675124..4676431) 1 NC_015422.1 PFAM: Peptidase M12A, astacin; KEGG: cph:Cpha266_0056 peptidase M12A, astacin; SMART: Peptidase, metallopeptidase; Astacin 4676431 10485537 Alide2_4460 Alicycliphilus denitrificans K601 Astacin YP_004390280.1 4675124 R 596154 CDS YP_004390281.1 330826978 10485538 4676744..4677028 1 NC_015422.1 KEGG: dia:Dtpsy_3263 hypothetical protein; hypothetical protein 4677028 10485538 Alide2_4461 Alicycliphilus denitrificans K601 hypothetical protein YP_004390281.1 4676744 D 596154 CDS YP_004390282.1 330826979 10485539 complement(4677230..4678309) 1 NC_015422.1 KEGG: dia:Dtpsy_3264 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta 4678309 10485539 Alide2_4462 Alicycliphilus denitrificans K601 DNA polymerase III subunit delta YP_004390282.1 4677230 R 596154 CDS YP_004390283.1 330826980 10485540 complement(4678330..4678842) 1 NC_015422.1 PFAM: Lipopolysccharide assembly, LptE; KEGG: dia:Dtpsy_3265 rare lipoprotein B; Rare lipoprotein B 4678842 10485540 Alide2_4463 Alicycliphilus denitrificans K601 Rare lipoprotein B YP_004390283.1 4678330 R 596154 CDS YP_004390284.1 330826981 10485541 complement(4678842..4681547) 1 NC_015422.1 TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: ajs:Ajs_3917 leucyl-tRNA synthetase; leucyl-tRNA synthetase 4681547 10485541 Alide2_4464 Alicycliphilus denitrificans K601 leucyl-tRNA synthetase YP_004390284.1 4678842 R 596154 CDS YP_004390285.1 330826982 10485542 4681704..4682948 1 NC_015422.1 PFAM: Mechanosensitive ion channel MscS; KEGG: ajs:Ajs_3919 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4682948 10485542 Alide2_4465 Alicycliphilus denitrificans K601 mechanosensitive ion channel protein MscS YP_004390285.1 4681704 D 596154 CDS YP_004390286.1 330826983 10485543 4683253..4684779 1 NC_015422.1 PFAM: Aldehyde dehydrogenase domain; KEGG: bmj:BMULJ_03133 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 4684779 10485543 Alide2_4466 Alicycliphilus denitrificans K601 aldehyde dehydrogenase YP_004390286.1 4683253 D 596154 CDS YP_004390287.1 330826984 10485545 complement(4685693..4687666) 1 NC_015422.1 KEGG: pna:Pnap_0735 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; GAF modulated sigma54 specific transcriptional regulator 4687666 10485545 Alide2_4468 Alicycliphilus denitrificans K601 GAF modulated sigma54 specific transcriptional regulator YP_004390287.1 4685693 R 596154 CDS YP_004390288.1 330826985 10485546 4688034..4688516 1 NC_015422.1 PFAM: Cytochrome c, class I; KEGG: pna:Pnap_0736 cytochrome c-type protein; cytochrome c class I 4688516 10485546 Alide2_4469 Alicycliphilus denitrificans K601 cytochrome c class I YP_004390288.1 4688034 D 596154 CDS YP_004390289.1 330826986 10485547 4688931..4691507 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold; GAF; Diguanylate phosphodiesterase, EAL domain; KEGG: bxe:Bxe_C0015 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; GAF; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 4691507 10485547 Alide2_4470 Alicycliphilus denitrificans K601 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_004390289.1 4688931 D 596154 CDS YP_004390290.1 330826987 10485548 complement(4691514..4691933) 1 NC_015422.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_3920 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 4691933 10485548 Alide2_4471 Alicycliphilus denitrificans K601 biopolymer transport protein ExbD/TolR YP_004390290.1 4691514 R 596154 CDS YP_004390291.1 330826988 10485549 complement(4691940..4692593) 1 NC_015422.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_3269 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4692593 10485549 Alide2_4472 Alicycliphilus denitrificans K601 MotA/TolQ/ExbB proton channel YP_004390291.1 4691940 R 596154 CDS YP_004390292.1 330826989 10485550 complement(4692601..4693422) 1 NC_015422.1 TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; KEGG: ajs:Ajs_3922 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, N-terminal; dihydrodipicolinate reductase 4693422 10485550 Alide2_4473 Alicycliphilus denitrificans K601 dihydrodipicolinate reductase YP_004390292.1 4692601 R 596154 CDS YP_004390293.1 330826990 10485551 complement(4693477..4694019) 1 NC_015422.1 PFAM: Lipoprotein SmpA/OmlA; KEGG: dia:Dtpsy_3271 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 4694019 10485551 Alide2_4474 Alicycliphilus denitrificans K601 SmpA/OmlA domain-containing protein YP_004390293.1 4693477 R 596154 CDS YP_004390294.1 330826991 10485552 4694131..4694550 1 NC_015422.1 PFAM: Ferric-uptake regulator; KEGG: dia:Dtpsy_3272 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 4694550 10485552 Alide2_4475 Alicycliphilus denitrificans K601 Fur family ferric uptake regulator YP_004390294.1 4694131 D 596154 CDS YP_004390295.1 330826992 10485553 complement(4694558..4695511) 1 NC_015422.1 PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, N-terminal; KEGG: dia:Dtpsy_3273 HPr kinase/phosphorylase; HPr kinase 4695511 10485553 Alide2_4476 Alicycliphilus denitrificans K601 HPr kinase YP_004390295.1 4694558 R 596154 CDS YP_004390296.1 330826993 10485554 complement(4695805..4696272) 1 NC_015422.1 PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: ajs:Ajs_3926 PTS IIA-like nitrogen-regulatory protein PtsN; PTS IIA-like nitrogen-regulatory protein PtsN 4696272 10485554 Alide2_4477 Alicycliphilus denitrificans K601 PTS IIA-like nitrogen-regulatory protein PtsN YP_004390296.1 4695805 R 596154 CDS YP_004390297.1 330826994 10485555 complement(4696413..4696760) 1 NC_015422.1 KEGG: dia:Dtpsy_3275 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; sigma 54 modulation protein/ribosomal protein S30EA 4696760 10485555 Alide2_4478 Alicycliphilus denitrificans K601 sigma 54 modulation protein/ribosomal protein S30EA YP_004390297.1 4696413 R 596154 CDS YP_004390298.1 330826995 10485556 4697073..4697993 1 NC_015422.1 TIGRFAM: SAICAR synthetase; KEGG: dia:Dtpsy_3276 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 4697993 10485556 Alide2_4479 Alicycliphilus denitrificans K601 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_004390298.1 4697073 D 596154 CDS YP_004390299.1 330826996 10485557 complement(4698043..4698951) 1 NC_015422.1 KEGG: dia:Dtpsy_3279 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin 4698951 10485557 Alide2_4480 Alicycliphilus denitrificans K601 thioredoxin YP_004390299.1 4698043 R 596154 CDS YP_004390300.1 330826997 10485558 4699093..4699590 1 NC_015422.1 TIGRFAM: Phosphoribosylaminoimidazole carboxylase, core; KEGG: dia:Dtpsy_3282 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: Phosphoribosylaminoimidazole carboxylase, core; phosphoribosylaminoimidazole carboxylase catalytic subunit 4699590 10485558 Alide2_4481 Alicycliphilus denitrificans K601 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_004390300.1 4699093 D 596154 CDS YP_004390301.1 330826998 10485559 4699587..4700756 1 NC_015422.1 TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: dia:Dtpsy_3283 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; phosphoribosylaminoimidazole carboxylase ATPase subunit 4700756 10485559 Alide2_4482 Alicycliphilus denitrificans K601 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_004390301.1 4699587 D 596154 CDS YP_004390302.1 330826999 10485560 4700762..4701760 1 NC_015422.1 KEGG: ajs:Ajs_3936 translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5; Sua5/YciO/YrdC/YwlC family protein 4701760 10485560 Alide2_4483 Alicycliphilus denitrificans K601 Sua5/YciO/YrdC/YwlC family protein YP_004390302.1 4700762 D 596154 CDS YP_004390303.1 330827000 10485561 4701824..4702780 1 NC_015422.1 PFAM: Lipase, GDSL; KEGG: ajs:Ajs_3937 lipase; G-D-S-L family lipolytic protein 4702780 10485561 Alide2_4484 Alicycliphilus denitrificans K601 G-D-S-L family lipolytic protein YP_004390303.1 4701824 D 596154 CDS YP_004390304.1 330827001 10485562 complement(4702849..4703544) 1 NC_015422.1 PFAM: Outer membrane protein, OmpW; KEGG: pna:Pnap_1827 OmpW family protein; OmpW family protein 4703544 10485562 Alide2_4485 Alicycliphilus denitrificans K601 OmpW family protein YP_004390304.1 4702849 R 596154 CDS YP_004390305.1 330827002 10485563 complement(4703573..4705132) 1 NC_015422.1 KEGG: pna:Pnap_1828 hypothetical protein; hypothetical protein 4705132 10485563 Alide2_4486 Alicycliphilus denitrificans K601 hypothetical protein YP_004390305.1 4703573 R 596154 CDS YP_004390306.1 330827003 10485564 complement(4705235..4706707) 1 NC_015422.1 TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: dia:Dtpsy_3288 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 4706707 10485564 Alide2_4487 Alicycliphilus denitrificans K601 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_004390306.1 4705235 R 596154 CDS YP_004390307.1 330827004 10485565 4706783..4707511 1 NC_015422.1 KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease; hypothetical protein 4707511 10485565 Alide2_4488 Alicycliphilus denitrificans K601 hypothetical protein YP_004390307.1 4706783 D 596154 CDS YP_004390308.1 330827005 10485566 4707508..4707984 1 NC_015422.1 KEGG: dia:Dtpsy_3290 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; ribosomal-protein-alanine acetyltransferase 4707984 10485566 Alide2_4489 Alicycliphilus denitrificans K601 ribosomal-protein-alanine acetyltransferase YP_004390308.1 4707508 D 596154 CDS YP_004390309.1 330827006 10485567 4707981..4708718 1 NC_015422.1 KEGG: dia:Dtpsy_3291 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 4708718 10485567 Alide2_4490 Alicycliphilus denitrificans K601 phage SPO1 DNA polymerase-like protein YP_004390309.1 4707981 D 596154 CDS YP_004390310.1 330827007 10485568 4708889..4709875 1 NC_015422.1 KEGG: dac:Daci_0973 magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; magnesium and cobalt transport protein CorA 4709875 10485568 Alide2_4491 Alicycliphilus denitrificans K601 magnesium and cobalt transport protein CorA YP_004390310.1 4708889 D 596154 CDS YP_004390311.1 330827008 10485569 4710170..4710379 1 NC_015422.1 hypothetical protein 4710379 10485569 Alide2_4492 Alicycliphilus denitrificans K601 hypothetical protein YP_004390311.1 4710170 D 596154 CDS YP_004390312.1 330827009 10485570 4710679..4710861 1 NC_015422.1 hypothetical protein 4710861 10485570 Alide2_4493 Alicycliphilus denitrificans K601 hypothetical protein YP_004390312.1 4710679 D 596154 CDS YP_004390313.1 330827010 10485571 complement(4710930..4711697) 1 NC_015422.1 TIGRFAM: MTA/SAH nucleosidase; KEGG: dia:Dtpsy_3298 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: Nucleoside phosphorylase domain; MTA/SAH nucleosidase 4711697 10485571 Alide2_4494 Alicycliphilus denitrificans K601 MTA/SAH nucleosidase YP_004390313.1 4710930 R 596154 CDS YP_004390314.1 330827011 10485572 complement(4711757..4713433) 1 NC_015422.1 KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 4713433 10485572 Alide2_4495 Alicycliphilus denitrificans K601 long-chain-fatty-acid--CoA ligase YP_004390314.1 4711757 R 596154 CDS YP_004390315.1 330827012 10485573 complement(4713524..4714936) 1 NC_015422.1 KEGG: ctt:CtCNB1_0258 NAD(P) transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 4714936 10485573 Alide2_4496 Alicycliphilus denitrificans K601 NAD(P)(+) transhydrogenase YP_004390315.1 4713524 R 596154 CDS YP_004390316.1 330827013 10485574 complement(4714973..4716583) 1 NC_015422.1 KEGG: bpt:Bpet4170 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; NAD(P) transhydrogenase subunit alpha 4716583 10485574 Alide2_4497 Alicycliphilus denitrificans K601 NAD(P) transhydrogenase subunit alpha YP_004390316.1 4714973 R 596154 CDS YP_004390317.1 330827014 10485575 complement(4716638..4717357) 1 NC_015422.1 KEGG: dia:Dtpsy_3302 hypothetical protein; hypothetical protein 4717357 10485575 Alide2_4498 Alicycliphilus denitrificans K601 hypothetical protein YP_004390317.1 4716638 R 596154 CDS YP_004390318.1 330827015 10485576 complement(4717481..4718545) 1 NC_015422.1 TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; KEGG: dia:Dtpsy_3304 fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: Ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase 4718545 10485576 Alide2_4499 Alicycliphilus denitrificans K601 fructose-bisphosphate aldolase YP_004390318.1 4717481 R 596154 CDS YP_004390319.1 330827016 10485577 complement(4718683..4720125) 1 NC_015422.1 TIGRFAM: Pyruvate kinase; KEGG: dia:Dtpsy_3305 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like; pyruvate kinase 4720125 10485577 Alide2_4500 Alicycliphilus denitrificans K601 pyruvate kinase YP_004390319.1 4718683 R 596154 CDS YP_004390320.1 330827017 10485578 complement(4720201..4721583) 1 NC_015422.1 KEGG: dia:Dtpsy_3306 peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; Xaa-Pro aminopeptidase 4721583 10485578 Alide2_4501 Alicycliphilus denitrificans K601 Xaa-Pro aminopeptidase YP_004390320.1 4720201 R 596154 CDS YP_004390321.1 330827018 10485579 complement(4721805..4722584) 1 NC_015422.1 PFAM: Crotonase, core; KEGG: dac:Daci_0802 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 4722584 10485579 Alide2_4502 Alicycliphilus denitrificans K601 enoyl-CoA hydratase/isomerase YP_004390321.1 4721805 R 596154 CDS YP_004390322.1 330827019 10485580 complement(4722584..4723555) 1 NC_015422.1 KEGG: dac:Daci_0801 hypothetical protein; hypothetical protein 4723555 10485580 Alide2_4503 Alicycliphilus denitrificans K601 hypothetical protein YP_004390322.1 4722584 R 596154 CDS YP_004390323.1 330827020 10485581 complement(4723556..4724734) 1 NC_015422.1 KEGG: xtr:100495402 caiB/baiF CoA-transferase family protein DDB_G0269880-like; PFAM: CoA-transferase family III; formyl-CoA transferase 4724734 10485581 Alide2_4504 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004390323.1 4723556 R 596154 CDS YP_004390324.1 330827021 10485582 complement(4724745..4725908) 1 NC_015422.1 PFAM: Thiolase, C-terminal; KEGG: rme:Rmet_5111 thiolase; thiolase domain-containing protein 4725908 10485582 Alide2_4505 Alicycliphilus denitrificans K601 thiolase domain-containing protein YP_004390324.1 4724745 R 596154 CDS YP_004390325.1 330827022 10485583 complement(4725905..4726306) 1 NC_015422.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: axy:AXYL_04666 hypothetical protein; hypothetical protein 4726306 10485583 Alide2_4506 Alicycliphilus denitrificans K601 hypothetical protein YP_004390325.1 4725905 R 596154 CDS YP_004390326.1 330827023 10485584 complement(4726311..4727318) 1 NC_015422.1 KEGG: axy:AXYL_04659 extra-cytoplasmic solute receptor family protein 120; extra-cytoplasmic solute receptor family protein 4727318 10485584 Alide2_4507 Alicycliphilus denitrificans K601 extra-cytoplasmic solute receptor family protein YP_004390326.1 4726311 R 596154 CDS YP_004390327.1 330827024 10485585 complement(4727478..4728386) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: xtr:100494792 uncharacterized HTH-type transcriptional regulator ywbI-like; LysR family transcriptional regulator 4728386 10485585 Alide2_4508 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390327.1 4727478 R 596154 CDS YP_004390328.1 330827025 10485586 complement(4728392..4729168) 1 NC_015422.1 PFAM: Nucleotidyl transferase; KEGG: ajs:Ajs_3958 nucleotidyl transferase; nucleotidyl transferase 4729168 10485586 Alide2_4509 Alicycliphilus denitrificans K601 nucleotidyl transferase YP_004390328.1 4728392 R 596154 CDS YP_004390329.1 330827026 10485587 4729243..4731279 1 NC_015422.1 SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: dia:Dtpsy_3309 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; transketolase 4731279 10485587 Alide2_4510 Alicycliphilus denitrificans K601 transketolase YP_004390329.1 4729243 D 596154 CDS YP_004390330.1 330827027 10485588 4731310..4732311 1 NC_015422.1 SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ajs:Ajs_3960 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; type I glyceraldehyde-3-phosphate dehydrogenase 4732311 10485588 Alide2_4511 Alicycliphilus denitrificans K601 type I glyceraldehyde-3-phosphate dehydrogenase YP_004390330.1 4731310 D 596154 CDS YP_004390331.1 330827028 10485589 complement(4732473..4732817) 1 NC_015422.1 PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; KEGG: dia:Dtpsy_3312 ribosomal subunit interface protein, putative; sigma 54 modulation protein/ribosomal protein S30EA 4732817 10485589 Alide2_4512 Alicycliphilus denitrificans K601 sigma 54 modulation protein/ribosomal protein S30EA YP_004390331.1 4732473 R 596154 CDS YP_004390332.1 330827029 10485590 4732991..4733872 1 NC_015422.1 PFAM: Peptidase C26; KEGG: dia:Dtpsy_3313 peptidase C26; peptidase C26 4733872 10485590 Alide2_4513 Alicycliphilus denitrificans K601 peptidase C26 YP_004390332.1 4732991 D 596154 CDS YP_004390333.1 330827030 10485591 complement(4733873..4734757) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2148 LysR family transcriptional regulator; LysR family transcriptional regulator 4734757 10485591 Alide2_4514 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390333.1 4733873 R 596154 CDS YP_004390334.1 330827031 10485592 4734878..4735768 1 NC_015422.1 PFAM: Amidohydrolase 2; KEGG: pol:Bpro_2147 amidohydrolase 2; amidohydrolase 2 4735768 10485592 Alide2_4515 Alicycliphilus denitrificans K601 amidohydrolase 2 YP_004390334.1 4734878 D 596154 CDS YP_004390335.1 330827032 10485593 4735811..4736641 1 NC_015422.1 KEGG: pol:Bpro_2146 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 4736641 10485593 Alide2_4516 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004390335.1 4735811 D 596154 CDS YP_004390336.1 330827033 10485594 4736698..4737669 1 NC_015422.1 KEGG: pol:Bpro_2145 hypothetical protein; hypothetical protein 4737669 10485594 Alide2_4517 Alicycliphilus denitrificans K601 hypothetical protein YP_004390336.1 4736698 D 596154 CDS YP_004390337.1 330827034 10485595 4737693..4738214 1 NC_015422.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_2144 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 4738214 10485595 Alide2_4518 Alicycliphilus denitrificans K601 carboxymuconolactone decarboxylase YP_004390337.1 4737693 D 596154 CDS YP_004390338.1 330827035 10485596 4738211..4738924 1 NC_015422.1 KEGG: pol:Bpro_2143 hypothetical protein; hypothetical protein 4738924 10485596 Alide2_4519 Alicycliphilus denitrificans K601 hypothetical protein YP_004390338.1 4738211 D 596154 CDS YP_004390339.1 330827036 10485597 complement(4738949..4740163) 1 NC_015422.1 KEGG: dac:Daci_2267 PepSY-associated TM helix domain-containing protein; PepSY-associated TM helix domain-containing protein 4740163 10485597 Alide2_4520 Alicycliphilus denitrificans K601 PepSY-associated TM helix domain-containing protein YP_004390339.1 4738949 R 596154 CDS YP_004390340.1 330827037 10485598 complement(4740163..4742370) 1 NC_015422.1 KEGG: ctt:CtCNB1_3496 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; TonB-dependent siderophore receptor 4742370 10485598 Alide2_4521 Alicycliphilus denitrificans K601 TonB-dependent siderophore receptor YP_004390340.1 4740163 R 596154 CDS YP_004390341.1 330827038 10485599 complement(4742511..4742984) 1 NC_015422.1 KEGG: dia:Dtpsy_3314 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 4742984 10485599 Alide2_4522 Alicycliphilus denitrificans K601 FKBP-type peptidylprolyl isomerase YP_004390341.1 4742511 R 596154 CDS YP_004390342.1 330827039 10485600 complement(4743039..4744010) 1 NC_015422.1 KEGG: ctt:CtCNB1_4653 TctC; hypothetical protein 4744010 10485600 Alide2_4523 Alicycliphilus denitrificans K601 hypothetical protein YP_004390342.1 4743039 R 596154 CDS YP_004390343.1 330827040 10485601 complement(4744042..4744395) 1 NC_015422.1 KEGG: ctt:CtCNB1_4654 hypothetical protein; hypothetical protein 4744395 10485601 Alide2_4524 Alicycliphilus denitrificans K601 hypothetical protein YP_004390343.1 4744042 R 596154 CDS YP_004390344.1 330827041 10485602 complement(4744414..4745775) 1 NC_015422.1 PFAM: Protein of unknown function DUF1446; KEGG: ctt:CtCNB1_4655 NAD-dependent aldehyde dehydrogenase; hypothetical protein 4745775 10485602 Alide2_4525 Alicycliphilus denitrificans K601 hypothetical protein YP_004390344.1 4744414 R 596154 CDS YP_004390345.1 330827042 10485603 4745884..4746774 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_4656 transcriptional regulator, LysR family; LysR family transcriptional regulator 4746774 10485603 Alide2_4526 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390345.1 4745884 D 596154 CDS YP_004390346.1 330827043 10485604 complement(4746874..4747350) 1 NC_015422.1 KEGG: aav:Aave_4607 transcription activator, effector binding; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding; transcriptional activator ligand binding domain-containing protein 4747350 10485604 Alide2_4527 Alicycliphilus denitrificans K601 transcriptional activator ligand binding domain-containing protein YP_004390346.1 4746874 R 596154 CDS YP_004390347.1 330827044 10485605 complement(4747652..4748707) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3318 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4748707 10485605 Alide2_4528 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004390347.1 4747652 R 596154 CDS YP_004390348.1 330827045 10485606 complement(4748804..4749427) 1 NC_015422.1 KEGG: dia:Dtpsy_3319 hypothetical protein; hypothetical protein 4749427 10485606 Alide2_4529 Alicycliphilus denitrificans K601 hypothetical protein YP_004390348.1 4748804 R 596154 CDS YP_004390349.1 330827046 10485607 complement(4749455..4750201) 1 NC_015422.1 PFAM: DTW; KEGG: ajs:Ajs_3970 DTW domain-containing protein; DTW domain-containing protein 4750201 10485607 Alide2_4530 Alicycliphilus denitrificans K601 DTW domain-containing protein YP_004390349.1 4749455 R 596154 CDS YP_004390350.1 330827047 10485608 4750379..4751221 1 NC_015422.1 KEGG: ajs:Ajs_3971 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 4751221 10485608 Alide2_4531 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004390350.1 4750379 D 596154 CDS YP_004390351.1 330827048 10485609 4751218..4752369 1 NC_015422.1 KEGG: ajs:Ajs_3972 thiolase; thiolase 4752369 10485609 Alide2_4532 Alicycliphilus denitrificans K601 thiolase YP_004390351.1 4751218 D 596154 CDS YP_004390352.1 330827049 10485610 4752372..4752731 1 NC_015422.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: ajs:Ajs_3973 hypothetical protein; hypothetical protein 4752731 10485610 Alide2_4533 Alicycliphilus denitrificans K601 hypothetical protein YP_004390352.1 4752372 D 596154 CDS YP_004390353.1 330827050 10485611 4752754..4753731 1 NC_015422.1 KEGG: dia:Dtpsy_3324 hypothetical protein; hypothetical protein 4753731 10485611 Alide2_4534 Alicycliphilus denitrificans K601 hypothetical protein YP_004390353.1 4752754 D 596154 CDS YP_004390354.1 330827051 10485612 4753740..4755827 1 NC_015422.1 KEGG: dia:Dtpsy_3325 CoA-binding domain protein; PFAM: CoA-binding; ATP-grasp fold, succinyl-CoA synthetase-type; SMART: CoA-binding; CoA-binding domain-containing protein 4755827 10485612 Alide2_4535 Alicycliphilus denitrificans K601 CoA-binding domain-containing protein YP_004390354.1 4753740 D 596154 CDS YP_004390355.1 330827052 10485613 complement(4755876..4756574) 1 NC_015422.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: ajs:Ajs_3976 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein 4756574 10485613 Alide2_4536 Alicycliphilus denitrificans K601 glutathione S-transferase domain-containing protein YP_004390355.1 4755876 R 596154 CDS YP_004390356.1 330827053 10485614 complement(4756577..4757338) 1 NC_015422.1 KEGG: ajs:Ajs_3977 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 4757338 10485614 Alide2_4537 Alicycliphilus denitrificans K601 3-oxoacyl-ACP reductase YP_004390356.1 4756577 R 596154 CDS YP_004390357.1 330827054 10485615 complement(4757366..4757767) 1 NC_015422.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_3978 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 4757767 10485615 Alide2_4538 Alicycliphilus denitrificans K601 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004390357.1 4757366 R 596154 CDS YP_004390358.1 330827055 10485616 complement(4757812..4760733) 1 NC_015422.1 SMART: DNA topoisomerase, type IA, DNA-binding; SWIB domain; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: ajs:Ajs_3990 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; SWIB/MDM2 domain; Toprim domain; DNA topoisomerase III 4760733 10485616 Alide2_4539 Alicycliphilus denitrificans K601 DNA topoisomerase III YP_004390358.1 4757812 R 596154 CDS YP_004390359.1 330827056 10485617 4760834..4761385 1 NC_015422.1 KEGG: dia:Dtpsy_3340 nuclear protein SET; PFAM: SET domain; SMART: SET domain; Post-SET domain; nuclear protein SET 4761385 10485617 Alide2_4540 Alicycliphilus denitrificans K601 nuclear protein SET YP_004390359.1 4760834 D 596154 CDS YP_004390360.1 330827057 10485618 4761382..4762212 1 NC_015422.1 KEGG: dia:Dtpsy_3341 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal; biotin--acetyl-CoA-carboxylase ligase 4762212 10485618 Alide2_4541 Alicycliphilus denitrificans K601 biotin--acetyl-CoA-carboxylase ligase YP_004390360.1 4761382 D 596154 CDS YP_004390361.1 330827058 10485619 4762369..4763040 1 NC_015422.1 PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_3342 sporulation domain protein; sporulation domain-containing protein 4763040 10485619 Alide2_4542 Alicycliphilus denitrificans K601 sporulation domain-containing protein YP_004390361.1 4762369 D 596154 CDS YP_004390362.1 330827059 10485620 complement(4763048..4764085) 1 NC_015422.1 KEGG: pna:Pnap_2134 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; NADPH:quinone reductase 4764085 10485620 Alide2_4543 Alicycliphilus denitrificans K601 NADPH:quinone reductase YP_004390362.1 4763048 R 596154 CDS YP_004390363.1 330827060 10485621 complement(4764082..4764537) 1 NC_015422.1 PFAM: MaoC-like dehydratase; KEGG: axy:AXYL_04788 MaoC-like domain-containing protein 10; MaoC domain-containing protein dehydratase 4764537 10485621 Alide2_4544 Alicycliphilus denitrificans K601 MaoC domain-containing protein dehydratase YP_004390363.1 4764082 R 596154 CDS YP_004390364.1 330827061 10485622 complement(4764524..4764994) 1 NC_015422.1 KEGG: axy:AXYL_04789 acyl dehydratase 3; acyl dehydratase 3 4764994 10485622 Alide2_4545 Alicycliphilus denitrificans K601 acyl dehydratase 3 YP_004390364.1 4764524 R 596154 CDS YP_004390365.1 330827062 10485623 complement(4765005..4766201) 1 NC_015422.1 PFAM: Extracellular ligand-binding receptor; KEGG: xtr:100489190 leu/Ile/Val-binding protein homolog 6-like; extracellular ligand-binding receptor 4766201 10485623 Alide2_4546 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004390365.1 4765005 R 596154 CDS YP_004390366.1 330827063 10485624 complement(4766261..4768243) 1 NC_015422.1 KEGG: bur:Bcep18194_C7155 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; acetate--CoA ligase 4768243 10485624 Alide2_4547 Alicycliphilus denitrificans K601 acetate--CoA ligase YP_004390366.1 4766261 R 596154 CDS YP_004390367.1 330827064 10485625 4768375..4768881 1 NC_015422.1 KEGG: vei:Veis_4103 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; MarR family transcriptional regulator 4768881 10485625 Alide2_4548 Alicycliphilus denitrificans K601 MarR family transcriptional regulator YP_004390367.1 4768375 D 596154 CDS YP_004390368.1 330827065 10485626 4768963..4769334 1 NC_015422.1 KEGG: afw:Anae109_4130 hypothetical protein; hypothetical protein 4769334 10485626 Alide2_4549 Alicycliphilus denitrificans K601 hypothetical protein YP_004390368.1 4768963 D 596154 CDS YP_004390369.1 330827066 10485627 4769602..4770300 1 NC_015422.1 KEGG: azo:azo2874 hypothetical protein; PFAM: RES; SMART: RES; RES domain-containing protein 4770300 10485627 Alide2_4550 Alicycliphilus denitrificans K601 RES domain-containing protein YP_004390369.1 4769602 D 596154 CDS YP_004390370.1 330827067 10485628 complement(4770311..4771384) 1 NC_015422.1 PFAM: Opine dehydrogenase; Ketopantoate reductase ApbA/PanE, N-terminal; KEGG: vap:Vapar_0420 NAD/NADP octopine/nopaline dehydrogenase; NAD/NADP octopine/nopaline dehydrogenase 4771384 10485628 Alide2_4551 Alicycliphilus denitrificans K601 NAD/NADP octopine/nopaline dehydrogenase YP_004390370.1 4770311 R 596154 CDS YP_004390371.1 330827068 10485629 complement(4771381..4772409) 1 NC_015422.1 KEGG: vap:Vapar_0421 hypothetical protein; hypothetical protein 4772409 10485629 Alide2_4552 Alicycliphilus denitrificans K601 hypothetical protein YP_004390371.1 4771381 R 596154 CDS YP_004390372.1 330827069 10485630 complement(4772441..4773886) 1 NC_015422.1 KEGG: dia:Dtpsy_3348 histidine kinase; PFAM: Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 4773886 10485630 Alide2_4553 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004390372.1 4772441 R 596154 CDS YP_004390373.1 330827070 10485631 complement(4773952..4774626) 1 NC_015422.1 KEGG: ajs:Ajs_3999 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 4774626 10485631 Alide2_4554 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004390373.1 4773952 R 596154 CDS YP_004390374.1 330827071 10485632 complement(4774754..4775884) 1 NC_015422.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: 2-aminoethylphosphonate--pyruvate transaminase; 2-aminoethylphosphonate aminotransferase; HAMAP: 2-aminoethylphosphonate--pyruvate transaminase; KEGG: bcj:BCAL0446 2-aminoethylphosphonate--pyruvate transaminase; 2-aminoethylphosphonate--pyruvate transaminase 4775884 10485632 Alide2_4555 Alicycliphilus denitrificans K601 2-aminoethylphosphonate--pyruvate transaminase YP_004390374.1 4774754 R 596154 CDS YP_004390375.1 330827072 10485633 complement(4775919..4777640) 1 NC_015422.1 KEGG: reu:Reut_B5872 binding-protein dependent transport system inner membrane protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein, putative; PFAM: Binding-protein-dependent transport systems inner membrane component; 2-aminoethylphosphonate ABC transporter permease 4777640 10485633 Alide2_4556 Alicycliphilus denitrificans K601 2-aminoethylphosphonate ABC transporter permease YP_004390375.1 4775919 R 596154 CDS YP_004390376.1 330827073 10485634 complement(4777637..4778770) 1 NC_015422.1 SMART: ATPase, AAA+ type, core; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2; KEGG: reu:Reut_B5873 ABC transporter related; PFAM: ABC transporter-like; 2-aminoethylphosphonate ABC transporter ATP-binding protein 4778770 10485634 Alide2_4557 Alicycliphilus denitrificans K601 2-aminoethylphosphonate ABC transporter ATP-binding protein YP_004390376.1 4777637 R 596154 CDS YP_004390377.1 330827074 10485635 complement(4778848..4779885) 1 NC_015422.1 KEGG: reu:Reut_B5874 extracellular solute-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: Bacterial extracellular solute-binding, family 1; 2-aminoethylphosphonate ABC transporter substrate-binding protein 4779885 10485635 Alide2_4558 Alicycliphilus denitrificans K601 2-aminoethylphosphonate ABC transporter substrate-binding protein YP_004390377.1 4778848 R 596154 CDS YP_004390378.1 330827075 10485636 4780028..4780756 1 NC_015422.1 TIGRFAM: Transcription regulator, 2-aminoethylphosphonate utilisation-associated; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; KEGG: reu:Reut_B5875 GntR family transcriptional regulator; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 4780756 10485636 Alide2_4559 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004390378.1 4780028 D 596154 CDS YP_004390379.1 330827076 10485637 4780758..4781993 1 NC_015422.1 KEGG: reu:Reut_B5876 type I phosphodiesterase/nucleotide pyrophosphatase; TIGRFAM: Phosphonoacetate hydrolase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; phosphonoacetate hydrolase 4781993 10485637 Alide2_4560 Alicycliphilus denitrificans K601 phosphonoacetate hydrolase YP_004390379.1 4780758 D 596154 CDS YP_004390380.1 330827077 10485638 4782028..4783476 1 NC_015422.1 TIGRFAM: Putative phosphonoacetaldehyde dehydrogenase; KEGG: cti:RALTA_B0682 NAD+ dependent acetaldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; phosphonoacetaldehyde dehydrogenase 4783476 10485638 Alide2_4561 Alicycliphilus denitrificans K601 phosphonoacetaldehyde dehydrogenase YP_004390380.1 4782028 D 596154 CDS YP_004390381.1 330827078 10485639 4783482..4784021 1 NC_015422.1 TIGRFAM: Phosphonate degradation operon associated HDIG domain protein; KEGG: vei:Veis_1186 HD phosphohydrolase-like protein; phosphonate degradation operons associated HDIG domain-containing protein 4784021 10485639 Alide2_4562 Alicycliphilus denitrificans K601 phosphonate degradation operons associated HDIG domain-containing protein YP_004390381.1 4783482 D 596154 CDS YP_004390382.1 330827079 10485640 4784121..4785509 1 NC_015422.1 KEGG: bcm:Bcenmc03_3163 aminophosphonate oxidoreductase; TIGRFAM: Putative aminophosphonate oxidoreductase; PFAM: FAD dependent oxidoreductase; aminophosphonate oxidoreductase 4785509 10485640 Alide2_4563 Alicycliphilus denitrificans K601 aminophosphonate oxidoreductase YP_004390382.1 4784121 D 596154 CDS YP_004390383.1 330827080 10485641 complement(4785648..4786724) 1 NC_015422.1 TIGRFAM: Alanine racemase; KEGG: tmz:Tmz1t_3995 alanine racemase; PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; alanine racemase 4786724 10485641 Alide2_4564 Alicycliphilus denitrificans K601 alanine racemase YP_004390383.1 4785648 R 596154 CDS YP_004390384.1 330827081 10485642 complement(4786721..4788031) 1 NC_015422.1 HAMAP: D-amino acid dehydrogenase small subunit, DadA; KEGG: dac:Daci_3117 D-amino acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase; D-amino acid dehydrogenase small subunit 4788031 10485642 Alide2_4565 Alicycliphilus denitrificans K601 D-amino acid dehydrogenase small subunit YP_004390384.1 4786721 R 596154 CDS YP_004390385.1 330827082 10485643 4788158..4788670 1 NC_015422.1 KEGG: vap:Vapar_3966 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator 4788670 10485643 Alide2_4566 Alicycliphilus denitrificans K601 AsnC family transcriptional regulator YP_004390385.1 4788158 D 596154 CDS YP_004390386.1 330827083 10485644 complement(4788655..4789134) 1 NC_015422.1 PFAM: HTH transcriptional regulator, MarR; KEGG: ajs:Ajs_4000 MarR family transcriptional regulator; regulatory protein MarR 4789134 10485644 Alide2_4567 Alicycliphilus denitrificans K601 regulatory protein MarR YP_004390386.1 4788655 R 596154 CDS YP_004390387.1 330827084 10485645 4789281..4790390 1 NC_015422.1 TIGRFAM: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA; KEGG: dia:Dtpsy_3351 RecA protein; SMART: ATPase, AAA+ type, core; recA protein 4790390 10485645 Alide2_4568 Alicycliphilus denitrificans K601 recA protein YP_004390387.1 4789281 D 596154 CDS YP_004390388.1 330827085 10485646 4790471..4790929 1 NC_015422.1 PFAM: Regulatory protein RecX; KEGG: dia:Dtpsy_3352 regulatory protein RecX; regulatory protein RecX 4790929 10485646 Alide2_4569 Alicycliphilus denitrificans K601 regulatory protein RecX YP_004390388.1 4790471 D 596154 CDS YP_004390389.1 330827086 10485647 complement(4790985..4793279) 1 NC_015422.1 PFAM: Protein of unknown function DUF1631; KEGG: dia:Dtpsy_3353 hypothetical protein; hypothetical protein 4793279 10485647 Alide2_4570 Alicycliphilus denitrificans K601 hypothetical protein YP_004390389.1 4790985 R 596154 CDS YP_004390390.1 330827087 10485648 complement(4793336..4794289) 1 NC_015422.1 KEGG: dia:Dtpsy_3354 preprotein translocase subunit SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal; protein-export membrane protein SecF 4794289 10485648 Alide2_4571 Alicycliphilus denitrificans K601 protein-export membrane protein SecF YP_004390390.1 4793336 R 596154 CDS YP_004390391.1 330827088 10485649 complement(4794301..4796196) 1 NC_015422.1 KEGG: dia:Dtpsy_3355 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal; protein-export membrane protein SecD 4796196 10485649 Alide2_4572 Alicycliphilus denitrificans K601 protein-export membrane protein SecD YP_004390391.1 4794301 R 596154 CDS YP_004390392.1 330827089 10485650 complement(4796279..4796611) 1 NC_015422.1 KEGG: dia:Dtpsy_3356 preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC; preprotein translocase subunit YajC 4796611 10485650 Alide2_4573 Alicycliphilus denitrificans K601 preprotein translocase subunit YajC YP_004390392.1 4796279 R 596154 CDS YP_004390393.1 330827090 10485651 complement(4796815..4800432) 1 NC_015422.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; KEGG: ajs:Ajs_4008 indolepyruvate ferredoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase 4800432 10485651 Alide2_4574 Alicycliphilus denitrificans K601 pyruvate/ketoisovalerate oxidoreductase YP_004390393.1 4796815 R 596154 CDS YP_004390394.1 330827091 10485652 4800612..4801085 1 NC_015422.1 KEGG: dia:Dtpsy_3359 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator 4801085 10485652 Alide2_4575 Alicycliphilus denitrificans K601 AsnC family transcriptional regulator YP_004390394.1 4800612 D 596154 CDS YP_004390395.1 330827092 10485653 4801228..4802937 1 NC_015422.1 PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: dia:Dtpsy_3362 protein of unknown function DUF894 DitE; hypothetical protein 4802937 10485653 Alide2_4576 Alicycliphilus denitrificans K601 hypothetical protein YP_004390395.1 4801228 D 596154 CDS YP_004390396.1 330827093 10485654 complement(4803046..4804245) 1 NC_015422.1 manually curated; PFAM: Lytic transglycosylase MltA; 3D; KEGG: ajs:Ajs_4013 MltA domain-containing protein; SMART: Lytic transglycosylase MltA; MltA domain-containing protein 4804245 10485654 Alide2_4577 Alicycliphilus denitrificans K601 MltA domain-containing protein YP_004390396.1 4803046 R 596154 CDS YP_004390397.1 330827094 10485655 4804428..4805072 1 NC_015422.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_3364 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4805072 10485655 Alide2_4578 Alicycliphilus denitrificans K601 OmpA/MotB domain-containing protein YP_004390397.1 4804428 D 596154 CDS YP_004390398.1 330827095 10485656 complement(4805130..4805765) 1 NC_015422.1 KEGG: ajs:Ajs_4015 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator 4805765 10485656 Alide2_4579 Alicycliphilus denitrificans K601 two component LuxR family transcriptional regulator YP_004390398.1 4805130 R 596154 CDS YP_004390399.1 330827096 10485657 complement(4805765..4807858) 1 NC_015422.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_3366 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; multi-sensor signal transduction histidine kinase 4807858 10485657 Alide2_4580 Alicycliphilus denitrificans K601 multi-sensor signal transduction histidine kinase YP_004390399.1 4805765 R 596154 CDS YP_004390400.1 330827097 10485658 complement(4807882..4808697) 1 NC_015422.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dia:Dtpsy_3367 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4808697 10485658 Alide2_4581 Alicycliphilus denitrificans K601 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004390400.1 4807882 R 596154 CDS YP_004390401.1 330827098 10485659 complement(4808694..4812782) 1 NC_015422.1 TIGRFAM: Conserved hypothetical protein CHP02099; KEGG: dia:Dtpsy_3368 hypothetical protein; hypothetical protein 4812782 10485659 Alide2_4582 Alicycliphilus denitrificans K601 hypothetical protein YP_004390401.1 4808694 R 596154 CDS YP_004390402.1 330827099 10485660 4812876..4815623 1 NC_015422.1 KEGG: dia:Dtpsy_3369 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase, repeated domain; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 4815623 10485660 Alide2_4583 Alicycliphilus denitrificans K601 (glutamate--ammonia-ligase) adenylyltransferase YP_004390402.1 4812876 D 596154 CDS YP_004390403.1 330827100 10485661 4815852..4816994 1 NC_015422.1 KEGG: dia:Dtpsy_3372 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 4816994 10485661 Alide2_4584 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004390403.1 4815852 D 596154 CDS YP_004390404.1 330827101 10485662 4817007..4820066 1 NC_015422.1 PFAM: Acriflavin resistance protein; KEGG: ajs:Ajs_4023 acriflavin resistance protein; acriflavin resistance protein 4820066 10485662 Alide2_4585 Alicycliphilus denitrificans K601 acriflavin resistance protein YP_004390404.1 4817007 D 596154 CDS YP_004390405.1 330827102 10485663 complement(4820460..4821074) 1 NC_015422.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_3375 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein 4821074 10485663 Alide2_4586 Alicycliphilus denitrificans K601 glutathione S-transferase domain-containing protein YP_004390405.1 4820460 R 596154 CDS YP_004390406.1 330827103 10485664 4821187..4822566 1 NC_015422.1 TIGRFAM: Adenylosuccinate lyase; KEGG: dia:Dtpsy_3376 adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal/plant; adenylosuccinate lyase 4822566 10485664 Alide2_4587 Alicycliphilus denitrificans K601 adenylosuccinate lyase YP_004390406.1 4821187 D 596154 CDS YP_004390407.1 330827104 10485665 4822636..4823196 1 NC_015422.1 PFAM: YaeQ; KEGG: dia:Dtpsy_3377 YaeQ family protein; YaeQ family protein 4823196 10485665 Alide2_4588 Alicycliphilus denitrificans K601 YaeQ family protein YP_004390407.1 4822636 D 596154 CDS YP_004390408.1 330827105 10485666 complement(4823466..4823771) 1 NC_015422.1 KEGG: dia:Dtpsy_3378 hypothetical protein; hypothetical protein 4823771 10485666 Alide2_4589 Alicycliphilus denitrificans K601 hypothetical protein YP_004390408.1 4823466 R 596154 CDS YP_004390409.1 330827106 10485667 complement(4823812..4824216) 1 NC_015422.1 PFAM: Protein of unknown function DUF1289; KEGG: dia:Dtpsy_3379 protein of unknown function DUF1289; hypothetical protein 4824216 10485667 Alide2_4590 Alicycliphilus denitrificans K601 hypothetical protein YP_004390409.1 4823812 R 596154 CDS YP_004390410.1 330827107 10485668 4824624..4825361 1 NC_015422.1 KEGG: ajs:Ajs_4030 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC; YjbE family integral membrane protein 4825361 10485668 Alide2_4591 Alicycliphilus denitrificans K601 YjbE family integral membrane protein YP_004390410.1 4824624 D 596154 CDS YP_004390411.1 330827108 10485669 4825396..4825866 1 NC_015422.1 KEGG: ajs:Ajs_4031 hypothetical protein; hypothetical protein 4825866 10485669 Alide2_4592 Alicycliphilus denitrificans K601 hypothetical protein YP_004390411.1 4825396 D 596154 CDS YP_004390412.1 330827109 10485670 complement(4825868..4826788) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rme:Rmet_4070 LysR family transcriptional regulator; LysR family transcriptional regulator 4826788 10485670 Alide2_4593 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390412.1 4825868 R 596154 CDS YP_004390413.1 330827110 10485672 4828290..4828646 1 NC_015422.1 PFAM: Membrane protein of unknown function; KEGG: dia:Dtpsy_3382 membrane protein of unknown function; hypothetical protein 4828646 10485672 Alide2_4595 Alicycliphilus denitrificans K601 hypothetical protein YP_004390413.1 4828290 D 596154 CDS YP_004390414.1 330827111 10485673 complement(4828614..4830140) 1 NC_015422.1 PFAM: Peptidase M48; KEGG: dia:Dtpsy_3383 peptidase M48 Ste24p; peptidase M48 Ste24p 4830140 10485673 Alide2_4596 Alicycliphilus denitrificans K601 peptidase M48 Ste24p YP_004390414.1 4828614 R 596154 CDS YP_004390415.1 330827112 10485674 4830290..4830775 1 NC_015422.1 KEGG: ajs:Ajs_4034 GTP cyclohydrolase subunit MoaC; TIGRFAM: Molybdenum cofactor biosynthesis C; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain; molybdenum cofactor biosynthesis protein C 4830775 10485674 Alide2_4597 Alicycliphilus denitrificans K601 molybdenum cofactor biosynthesis protein C YP_004390415.1 4830290 D 596154 CDS YP_004390416.1 330827113 10485675 complement(4831077..4832501) 1 NC_015422.1 KEGG: nla:NLA_7720 hypothetical protein; hypothetical protein 4832501 10485675 Alide2_4598 Alicycliphilus denitrificans K601 hypothetical protein YP_004390416.1 4831077 R 596154 CDS YP_004390417.1 330827114 10485676 complement(4832520..4833290) 1 NC_015422.1 KEGG: dia:Dtpsy_3386 FimB; hypothetical protein 4833290 10485676 Alide2_4599 Alicycliphilus denitrificans K601 hypothetical protein YP_004390417.1 4832520 R 596154 CDS YP_004390418.1 330827115 10485677 complement(4833400..4833978) 1 NC_015422.1 manually curated; KEGG: pau:PA14_58730 type IV pilin structural subunit; type IV pilin structural subunit 4833978 10485677 Alide2_4600 Alicycliphilus denitrificans K601 type IV pilin structural subunit YP_004390418.1 4833400 R 596154 CDS YP_004390419.1 330827116 10485678 complement(4834263..4835051) 1 NC_015422.1 KEGG: pol:Bpro_4676 cyclic-AMP phosphodiesterase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; cyclic-AMP phosphodiesterase 4835051 10485678 Alide2_4601 Alicycliphilus denitrificans K601 cyclic-AMP phosphodiesterase YP_004390419.1 4834263 R 596154 CDS YP_004390420.1 330827117 10485679 complement(4835119..4835745) 1 NC_015422.1 KEGG: ajs:Ajs_4043 FHA domain-containing protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain; FHA domain-containing protein 4835745 10485679 Alide2_4602 Alicycliphilus denitrificans K601 FHA domain-containing protein YP_004390420.1 4835119 R 596154 CDS YP_004390421.1 330827118 10485680 complement(4835807..4836613) 1 NC_015422.1 KEGG: ajs:Ajs_4044 protein phosphatase 2C domain-containing protein; PFAM: Protein phosphatase 2C, N-terminal; SMART: Protein phosphatase 2C-like; protein serine/threonine phosphatase 4836613 10485680 Alide2_4603 Alicycliphilus denitrificans K601 protein serine/threonine phosphatase YP_004390421.1 4835807 R 596154 CDS YP_004390422.1 330827119 10485681 complement(4836840..4837523) 1 NC_015422.1 KEGG: ajs:Ajs_4045 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC; YjbE family integral membrane protein 4837523 10485681 Alide2_4604 Alicycliphilus denitrificans K601 YjbE family integral membrane protein YP_004390422.1 4836840 R 596154 CDS YP_004390423.1 330827120 10485682 complement(4837665..4838558) 1 NC_015422.1 SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: dia:Dtpsy_3391 succinyl-CoA synthetase subunit alpha; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit alpha 4838558 10485682 Alide2_4605 Alicycliphilus denitrificans K601 succinyl-CoA synthetase subunit alpha YP_004390423.1 4837665 R 596154 CDS YP_004390424.1 330827121 10485683 complement(4838580..4839740) 1 NC_015422.1 TIGRFAM: Succinyl-CoA synthetase, beta subunit; KEGG: dia:Dtpsy_3392 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta 4839740 10485683 Alide2_4606 Alicycliphilus denitrificans K601 succinyl-CoA synthetase subunit beta YP_004390424.1 4838580 R 596154 CDS YP_004390425.1 330827122 10485684 4839914..4840846 1 NC_015422.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 2; KEGG: dia:Dtpsy_3393 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; N-acetyl-gamma-glutamyl-phosphate reductase 4840846 10485684 Alide2_4607 Alicycliphilus denitrificans K601 N-acetyl-gamma-glutamyl-phosphate reductase YP_004390425.1 4839914 D 596154 CDS YP_004390426.1 330827123 10485685 complement(4840955..4842094) 1 NC_015422.1 KEGG: ajs:Ajs_4049 fis family transcriptional regulator; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; DNA protecting protein DprA 4842094 10485685 Alide2_4608 Alicycliphilus denitrificans K601 DNA protecting protein DprA YP_004390426.1 4840955 R 596154 CDS YP_004390427.1 330827124 10485686 complement(4842117..4843337) 1 NC_015422.1 KEGG: ajs:Ajs_4050 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; peptidoglycan-binding lysin domain-containing protein 4843337 10485686 Alide2_4609 Alicycliphilus denitrificans K601 peptidoglycan-binding lysin domain-containing protein YP_004390427.1 4842117 R 596154 CDS YP_004390428.1 330827125 10485687 4843537..4844052 1 NC_015422.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: dia:Dtpsy_3396 peptide deformylase; PFAM: Formylmethionine deformylase; peptide deformylase 4844052 10485687 Alide2_4610 Alicycliphilus denitrificans K601 peptide deformylase YP_004390428.1 4843537 D 596154 CDS YP_004390429.1 330827126 10485688 4844049..4844534 1 NC_015422.1 KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane; hypothetical protein 4844534 10485688 Alide2_4611 Alicycliphilus denitrificans K601 hypothetical protein YP_004390429.1 4844049 D 596154 CDS YP_004390430.1 330827127 10485689 4844545..4845516 1 NC_015422.1 PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: ajs:Ajs_4053 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 4845516 10485689 Alide2_4612 Alicycliphilus denitrificans K601 methionyl-tRNA formyltransferase YP_004390430.1 4844545 D 596154 CDS YP_004390431.1 330827128 10485690 4845513..4846262 1 NC_015422.1 PFAM: Branched-chain amino acid transport, permease; KEGG: ajs:Ajs_4054 AzlC family protein; AzlC family protein 4846262 10485690 Alide2_4613 Alicycliphilus denitrificans K601 AzlC family protein YP_004390431.1 4845513 D 596154 CDS YP_004390432.1 330827129 10485691 4846259..4846594 1 NC_015422.1 PFAM: Branched-chain amino acid transport, AzlD; KEGG: dia:Dtpsy_3400 branched-chain amino acid transport; branched-chain amino acid transporter 4846594 10485691 Alide2_4614 Alicycliphilus denitrificans K601 branched-chain amino acid transporter YP_004390432.1 4846259 D 596154 CDS YP_004390433.1 330827130 10485692 4846665..4847858 1 NC_015422.1 HAMAP: Phosphoglycerate kinase; KEGG: dia:Dtpsy_3401 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; phosphoglycerate kinase 4847858 10485692 Alide2_4615 Alicycliphilus denitrificans K601 phosphoglycerate kinase YP_004390433.1 4846665 D 596154 CDS YP_004390434.1 330827131 10485693 4848018..4848704 1 NC_015422.1 KEGG: dac:Daci_0827 hypothetical protein; hypothetical protein 4848704 10485693 Alide2_4616 Alicycliphilus denitrificans K601 hypothetical protein YP_004390434.1 4848018 D 596154 CDS YP_004390435.1 330827132 10485694 4848701..4849255 1 NC_015422.1 KEGG: dac:Daci_0826 hypothetical protein; hypothetical protein 4849255 10485694 Alide2_4617 Alicycliphilus denitrificans K601 hypothetical protein YP_004390435.1 4848701 D 596154 CDS YP_004390436.1 330827133 10485695 complement(4849369..4850250) 1 NC_015422.1 PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_3402 protein of unknown function DUF6 transmembrane; hypothetical protein 4850250 10485695 Alide2_4618 Alicycliphilus denitrificans K601 hypothetical protein YP_004390436.1 4849369 R 596154 CDS YP_004390437.1 330827134 10485696 4850300..4851124 1 NC_015422.1 SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase, type 2; KEGG: dia:Dtpsy_3403 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain; orotidine 5'-phosphate decarboxylase 4851124 10485696 Alide2_4619 Alicycliphilus denitrificans K601 orotidine 5'-phosphate decarboxylase YP_004390437.1 4850300 D 596154 CDS YP_004390438.1 330827135 10485697 4851141..4852037 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_3404 transcriptional regulator, LysR family; LysR family transcriptional regulator 4852037 10485697 Alide2_4620 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390438.1 4851141 D 596154 CDS YP_004390439.1 330827136 10485698 4852157..4853149 1 NC_015422.1 KEGG: ajs:Ajs_4060 hypothetical protein; hypothetical protein 4853149 10485698 Alide2_4621 Alicycliphilus denitrificans K601 hypothetical protein YP_004390439.1 4852157 D 596154 CDS YP_004390440.1 330827137 10485699 4853146..4854120 1 NC_015422.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: dia:Dtpsy_3406 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 4854120 10485699 Alide2_4622 Alicycliphilus denitrificans K601 succinylglutamate desuccinylase/aspartoacylase YP_004390440.1 4853146 D 596154 CDS YP_004390441.1 330827138 10485700 4854250..4856217 1 NC_015422.1 KEGG: aav:Aave_4703 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 4856217 10485700 Alide2_4623 Alicycliphilus denitrificans K601 methyl-accepting chemotaxis sensory transducer YP_004390441.1 4854250 D 596154 CDS YP_004390442.1 330827139 10485701 complement(4856252..4859320) 1 NC_015422.1 TIGRFAM: Excinuclease ABC, A subunit; HAMAP: Excinuclease ABC, A subunit; KEGG: dia:Dtpsy_3409 excinuclease ABC, A subunit; PFAM: ABC transporter-like; UvrABC system protein A 4859320 10485701 Alide2_4624 Alicycliphilus denitrificans K601 UvrABC system protein A YP_004390442.1 4856252 R 596154 CDS YP_004390443.1 330827140 10485702 4859503..4860681 1 NC_015422.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_4065 major facilitator superfamily transporter; major facilitator superfamily protein 4860681 10485702 Alide2_4625 Alicycliphilus denitrificans K601 major facilitator superfamily protein YP_004390443.1 4859503 D 596154 CDS YP_004390444.1 330827141 10485703 4860824..4861357 1 NC_015422.1 KEGG: ajs:Ajs_4066 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding; single-strand binding protein 4861357 10485703 Alide2_4626 Alicycliphilus denitrificans K601 single-strand binding protein YP_004390444.1 4860824 D 596154 CDS YP_004390445.1 330827142 10485704 complement(4861464..4863125) 1 NC_015422.1 KEGG: ajs:Ajs_4067 L-lactate transport; TIGRFAM: L-lactate permease; PFAM: L-lactate permease; L-lactate transport 4863125 10485704 Alide2_4627 Alicycliphilus denitrificans K601 L-lactate transport YP_004390445.1 4861464 R 596154 CDS YP_004390446.1 330827143 10485705 complement(4863365..4864486) 1 NC_015422.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: dia:Dtpsy_3413 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA-specific 2-thiouridylase; tRNA-specific 2-thiouridylase mnmA 4864486 10485705 Alide2_4628 Alicycliphilus denitrificans K601 tRNA-specific 2-thiouridylase mnmA YP_004390446.1 4863365 R 596154 CDS YP_004390447.1 330827144 10485706 complement(4864483..4865469) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_0298 LysR family transcriptional regulator; LysR family transcriptional regulator 4865469 10485706 Alide2_4629 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390447.1 4864483 R 596154 CDS YP_004390448.1 330827145 10485707 4865528..4866616 1 NC_015422.1 PFAM: PrpF protein; KEGG: vei:Veis_0299 hypothetical protein; PrpF protein 4866616 10485707 Alide2_4630 Alicycliphilus denitrificans K601 PrpF protein YP_004390448.1 4865528 D 596154 CDS YP_004390449.1 330827146 10485708 4866669..4867658 1 NC_015422.1 KEGG: vei:Veis_0300 hypothetical protein; hypothetical protein 4867658 10485708 Alide2_4631 Alicycliphilus denitrificans K601 hypothetical protein YP_004390449.1 4866669 D 596154 CDS YP_004390450.1 330827147 10485709 4867680..4868765 1 NC_015422.1 PFAM: Porin, Gram-negative type; KEGG: vei:Veis_0301 porin; porin 4868765 10485709 Alide2_4632 Alicycliphilus denitrificans K601 porin YP_004390450.1 4867680 D 596154 CDS YP_004390451.1 330827148 10485710 4868843..4869787 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_3816 LysR family transcriptional regulator; LysR family transcriptional regulator 4869787 10485710 Alide2_4633 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390451.1 4868843 D 596154 CDS YP_004390452.1 330827149 10485711 4870025..4871461 1 NC_015422.1 KEGG: dia:Dtpsy_3415 tricarballylate dehydrogenase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobZ, precorrin 3B synthase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; precorrin 3B synthase CobZ 4871461 10485711 Alide2_4634 Alicycliphilus denitrificans K601 precorrin 3B synthase CobZ YP_004390452.1 4870025 D 596154 CDS YP_004390453.1 330827150 10485712 4871448..4872635 1 NC_015422.1 TIGRFAM: Citrate utilization protein B; KEGG: ajs:Ajs_4071 CitB domain-containing protein; CitB domain-containing protein 4872635 10485712 Alide2_4635 Alicycliphilus denitrificans K601 CitB domain-containing protein YP_004390453.1 4871448 D 596154 CDS YP_004390454.1 330827151 10485713 4872721..4873698 1 NC_015422.1 KEGG: dia:Dtpsy_3417 hypothetical protein; hypothetical protein 4873698 10485713 Alide2_4636 Alicycliphilus denitrificans K601 hypothetical protein YP_004390454.1 4872721 D 596154 CDS YP_004390455.1 330827152 10485714 complement(4873741..4875417) 1 NC_015422.1 KEGG: dia:Dtpsy_3418 sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma-54 specific transcriptional regulator 4875417 10485714 Alide2_4637 Alicycliphilus denitrificans K601 Fis family sigma-54 specific transcriptional regulator YP_004390455.1 4873741 R 596154 CDS YP_004390456.1 330827153 10485715 4875579..4877126 1 NC_015422.1 KEGG: dia:Dtpsy_3419 propionyl-CoA carboxylase; PFAM: Carboxyl transferase; propionyl-CoA carboxylase 4877126 10485715 Alide2_4638 Alicycliphilus denitrificans K601 propionyl-CoA carboxylase YP_004390456.1 4875579 D 596154 CDS YP_004390457.1 330827154 10485716 4877156..4878166 1 NC_015422.1 KEGG: dac:Daci_1098 hypothetical protein; hypothetical protein 4878166 10485716 Alide2_4639 Alicycliphilus denitrificans K601 hypothetical protein YP_004390457.1 4877156 D 596154 CDS YP_004390458.1 330827155 10485717 4878176..4880254 1 NC_015422.1 KEGG: dia:Dtpsy_3421 CoA-binding domain protein; PFAM: CoA-binding; SMART: CoA-binding; CoA-binding domain-containing protein 4880254 10485717 Alide2_4640 Alicycliphilus denitrificans K601 CoA-binding domain-containing protein YP_004390458.1 4878176 D 596154 CDS YP_004390459.1 330827156 10485718 4880251..4881618 1 NC_015422.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; KEGG: dac:Daci_1096 carbamoyl-phosphate synthase subunit L; SMART: Biotin carboxylase, C-terminal; biotin carboxylase 4881618 10485718 Alide2_4641 Alicycliphilus denitrificans K601 biotin carboxylase YP_004390459.1 4880251 D 596154 CDS YP_004390460.1 330827157 10485719 4881630..4881842 1 NC_015422.1 PFAM: Biotin/lipoyl attachment; KEGG: dia:Dtpsy_3423 biotin/lipoyl attachment domain-containing protein; biotin/lipoyl attachment domain-containing protein 4881842 10485719 Alide2_4642 Alicycliphilus denitrificans K601 biotin/lipoyl attachment domain-containing protein YP_004390460.1 4881630 D 596154 CDS YP_004390461.1 330827158 10485720 4881839..4882273 1 NC_015422.1 KEGG: dia:Dtpsy_3424 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein 4882273 10485720 Alide2_4643 Alicycliphilus denitrificans K601 phenylacetic acid degradation-like protein YP_004390461.1 4881839 D 596154 CDS YP_004390462.1 330827159 10485721 complement(4882300..4882785) 1 NC_015422.1 PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_3425 NUDIX hydrolase; NUDIX hydrolase 4882785 10485721 Alide2_4644 Alicycliphilus denitrificans K601 NUDIX hydrolase YP_004390462.1 4882300 R 596154 CDS YP_004390463.1 330827160 10485722 4882882..4883265 1 NC_015422.1 KEGG: dia:Dtpsy_3426 hypothetical protein; hypothetical protein 4883265 10485722 Alide2_4645 Alicycliphilus denitrificans K601 hypothetical protein YP_004390463.1 4882882 D 596154 CDS YP_004390464.1 330827161 10485723 4883375..4885492 1 NC_015422.1 KEGG: ajs:Ajs_4075 TonB-dependent copper receptor; TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; TonB-dependent copper receptor 4885492 10485723 Alide2_4646 Alicycliphilus denitrificans K601 TonB-dependent copper receptor YP_004390464.1 4883375 D 596154 CDS YP_004390465.1 330827162 10485724 4885713..4886177 1 NC_015422.1 KEGG: met:M446_5737 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein 4886177 10485724 Alide2_4647 Alicycliphilus denitrificans K601 phenylacetic acid degradation-like protein YP_004390465.1 4885713 D 596154 CDS YP_004390466.1 330827163 10485725 4886227..4887105 1 NC_015422.1 KEGG: bxe:Bxe_C0866 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 4887105 10485725 Alide2_4648 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004390466.1 4886227 D 596154 CDS YP_004390467.1 330827164 10485726 complement(4887140..4888117) 1 NC_015422.1 KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein 4888117 10485726 Alide2_4649 Alicycliphilus denitrificans K601 hypothetical protein YP_004390467.1 4887140 R 596154 CDS YP_004390468.1 330827165 10485727 complement(4888153..4889346) 1 NC_015422.1 KEGG: rpf:Rpic12D_1541 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase 4889346 10485727 Alide2_4650 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004390468.1 4888153 R 596154 CDS YP_004390469.1 330827166 10485728 complement(4889348..4890487) 1 NC_015422.1 KEGG: pzu:PHZ_c2530 hypothetical protein; hypothetical protein 4890487 10485728 Alide2_4651 Alicycliphilus denitrificans K601 hypothetical protein YP_004390469.1 4889348 R 596154 CDS YP_004390470.1 330827167 10485729 complement(4890527..4892077) 1 NC_015422.1 KEGG: gka:GK2759 acetyl-CoA synthetase (acetate-CoA ligase); PFAM: AMP-dependent synthetase/ligase; acetate--CoA ligase 4892077 10485729 Alide2_4652 Alicycliphilus denitrificans K601 acetate--CoA ligase YP_004390470.1 4890527 R 596154 CDS YP_004390471.1 330827168 10485730 complement(4892324..4893031) 1 NC_015422.1 TIGRFAM: Lumazine-binding protein; KEGG: ajs:Ajs_4077 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha 4893031 10485730 Alide2_4653 Alicycliphilus denitrificans K601 riboflavin synthase subunit alpha YP_004390471.1 4892324 R 596154 CDS YP_004390472.1 330827169 10485731 4893161..4893775 1 NC_015422.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: axy:AXYL_05416 LysE type translocator family protein 14; lysine exporter protein LysE/YggA 4893775 10485731 Alide2_4654 Alicycliphilus denitrificans K601 lysine exporter protein LysE/YggA YP_004390472.1 4893161 D 596154 CDS YP_004390473.1 330827170 10485732 complement(4893782..4895155) 1 NC_015422.1 KEGG: ajs:Ajs_4082 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase 4895155 10485732 Alide2_4655 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004390473.1 4893782 R 596154 CDS YP_004390474.1 330827171 10485733 complement(4895408..4896085) 1 NC_015422.1 KEGG: dia:Dtpsy_3431 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator 4896085 10485733 Alide2_4656 Alicycliphilus denitrificans K601 winged helix family two component transcriptional regulator YP_004390474.1 4895408 R 596154 CDS YP_004390475.1 330827172 10485734 complement(4896085..4896402) 1 NC_015422.1 PFAM: Peptidase M4, propeptide, PepSY; KEGG: dia:Dtpsy_3432 propeptide PepSY amd peptidase M4; propeptide PepSY amd peptidase M4 4896402 10485734 Alide2_4657 Alicycliphilus denitrificans K601 propeptide PepSY amd peptidase M4 YP_004390475.1 4896085 R 596154 CDS YP_004390476.1 330827173 10485735 4896541..4896852 1 NC_015422.1 KEGG: axy:AXYL_05206 hypothetical protein; hypothetical protein 4896852 10485735 Alide2_4658 Alicycliphilus denitrificans K601 hypothetical protein YP_004390476.1 4896541 D 596154 CDS YP_004390477.1 330827174 10485736 4896886..4898268 1 NC_015422.1 PFAM: Flavoprotein transmembrane component; FAD-binding 8; KEGG: dia:Dtpsy_3433 ferric reductase domain protein transmembrane component; ferric reductase domain-containing protein transmembrane component domain-containing protein 4898268 10485736 Alide2_4659 Alicycliphilus denitrificans K601 ferric reductase domain-containing protein transmembrane component domain-containing protein YP_004390477.1 4896886 D 596154 CDS YP_004390478.1 330827175 10485737 4898344..4898898 1 NC_015422.1 PFAM: Cytochrome b/b6, N-terminal; KEGG: pag:PLES_43981 cytochrome b561; cytochrome b/b6 domain-containing protein 4898898 10485737 Alide2_4660 Alicycliphilus denitrificans K601 cytochrome b/b6 domain-containing protein YP_004390478.1 4898344 D 596154 CDS YP_004390479.1 330827176 10485738 4898947..4899315 1 NC_015422.1 KEGG: dia:Dtpsy_3434 hypothetical protein; hypothetical protein 4899315 10485738 Alide2_4661 Alicycliphilus denitrificans K601 hypothetical protein YP_004390479.1 4898947 D 596154 CDS YP_004390480.1 330827177 10485739 4899338..4899817 1 NC_015422.1 KEGG: ajs:Ajs_4087 hypothetical protein; hypothetical protein 4899817 10485739 Alide2_4662 Alicycliphilus denitrificans K601 hypothetical protein YP_004390480.1 4899338 D 596154 CDS YP_004390481.1 330827178 10485740 4899814..4902024 1 NC_015422.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Flavodoxin/nitric oxide synthase; PepSY-associated TM helix; Oxidoreductase, FAD-binding domain; KEGG: ajs:Ajs_4088 oxidoreductase FAD/NAD(P)-binding subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 4902024 10485740 Alide2_4663 Alicycliphilus denitrificans K601 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_004390481.1 4899814 D 596154 CDS YP_004390482.1 330827179 10485741 4902005..4902982 1 NC_015422.1 PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: dia:Dtpsy_3437 ApbE family lipoprotein; ApbE family lipoprotein 4902982 10485741 Alide2_4664 Alicycliphilus denitrificans K601 ApbE family lipoprotein YP_004390482.1 4902005 D 596154 CDS YP_004390483.1 330827180 10485742 4903084..4903389 1 NC_015422.1 KEGG: ajs:Ajs_4090 hypothetical protein; hypothetical protein 4903389 10485742 Alide2_4665 Alicycliphilus denitrificans K601 hypothetical protein YP_004390483.1 4903084 D 596154 CDS YP_004390484.1 330827181 10485743 complement(4903405..4903872) 1 NC_015422.1 KEGG: ajs:Ajs_4091 hypothetical protein; hypothetical protein 4903872 10485743 Alide2_4666 Alicycliphilus denitrificans K601 hypothetical protein YP_004390484.1 4903405 R 596154 CDS YP_004390485.1 330827182 10485744 4903944..4906493 1 NC_015422.1 SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_3444 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; P-type (transporting) HAD superfamily ATPase 4906493 10485744 Alide2_4667 Alicycliphilus denitrificans K601 P-type (transporting) HAD superfamily ATPase YP_004390485.1 4903944 D 596154 CDS YP_004390486.1 330827183 10485745 4907159..4907299 1 NC_015422.1 hypothetical protein 4907299 10485745 Alide2_4668 Alicycliphilus denitrificans K601 hypothetical protein YP_004390486.1 4907159 D 596154 CDS YP_004390487.1 330827184 10485747 complement(4907984..4909078) 1 NC_015422.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bpt:Bpet0267 hypothetical protein; 2-nitropropane dioxygenase 4909078 10485747 Alide2_4670 Alicycliphilus denitrificans K601 2-nitropropane dioxygenase YP_004390487.1 4907984 R 596154 CDS YP_004390488.1 330827185 10485748 complement(4909080..4910051) 1 NC_015422.1 KEGG: bpt:Bpetpseudo_01 hypothetical protein; hypothetical protein 4910051 10485748 Alide2_4671 Alicycliphilus denitrificans K601 hypothetical protein YP_004390488.1 4909080 R 596154 CDS YP_004390489.1 330827186 10485749 complement(4910081..4911235) 1 NC_015422.1 KEGG: bpt:Bpet0266 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase 4911235 10485749 Alide2_4672 Alicycliphilus denitrificans K601 butyryl-CoA dehydrogenase YP_004390489.1 4910081 R 596154 CDS YP_004390490.1 330827187 10485750 complement(4911254..4912063) 1 NC_015422.1 KEGG: bpt:Bpet0265 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 4912063 10485750 Alide2_4673 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004390490.1 4911254 R 596154 CDS YP_004390491.1 330827188 10485751 4912253..4913593 1 NC_015422.1 KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; formyl-CoA transferase 4913593 10485751 Alide2_4674 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004390491.1 4912253 D 596154 CDS YP_004390492.1 330827189 10485752 4913611..4914612 1 NC_015422.1 TIGRFAM: Quinone oxidoreductase putative, YhdH/YhfP; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: bpt:Bpet0263 alcohol dehydrogenase III; SMART: Polyketide synthase, enoylreductase; YhdH/YhfP family quinone oxidoreductase 4914612 10485752 Alide2_4675 Alicycliphilus denitrificans K601 YhdH/YhfP family quinone oxidoreductase YP_004390492.1 4913611 D 596154 CDS YP_004390493.1 330827190 10485754 complement(4914842..4916074) 1 NC_015422.1 KEGG: sth:STH2463 acyl-CoA dehydrogenase, short-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase 4916074 10485754 Alide2_4677 Alicycliphilus denitrificans K601 acyl-CoA dehydrogenase YP_004390493.1 4914842 R 596154 CDS YP_004390494.1 330827191 10485755 complement(4916088..4917074) 1 NC_015422.1 KEGG: bpt:Bpetpseudo_01 hypothetical protein; hypothetical protein 4917074 10485755 Alide2_4678 Alicycliphilus denitrificans K601 hypothetical protein YP_004390494.1 4916088 R 596154 CDS YP_004390495.1 330827192 10485756 complement(4917112..4917972) 1 NC_015422.1 KEGG: bpt:Bpet0265 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator 4917972 10485756 Alide2_4679 Alicycliphilus denitrificans K601 IclR family transcriptional regulator YP_004390495.1 4917112 R 596154 CDS YP_004390496.1 330827193 10485757 4918057..4919292 1 NC_015422.1 KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; formyl-CoA transferase 4919292 10485757 Alide2_4680 Alicycliphilus denitrificans K601 formyl-CoA transferase YP_004390496.1 4918057 D 596154 CDS YP_004390497.1 330827194 10485758 complement(4919289..4920230) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_4196 LysR family transcriptional regulator; LysR family transcriptional regulator 4920230 10485758 Alide2_4681 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390497.1 4919289 R 596154 CDS YP_004390498.1 330827195 10485759 4920337..4921323 1 NC_015422.1 KEGG: vap:Vapar_1641 hypothetical protein; hypothetical protein 4921323 10485759 Alide2_4682 Alicycliphilus denitrificans K601 hypothetical protein YP_004390498.1 4920337 D 596154 CDS YP_004390499.1 330827196 10485760 4921335..4922954 1 NC_015422.1 TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: vap:Vapar_1640 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; gamma-glutamyltransferase 4922954 10485760 Alide2_4683 Alicycliphilus denitrificans K601 gamma-glutamyltransferase YP_004390499.1 4921335 D 596154 CDS YP_004390500.1 330827197 10485761 complement(4922970..4923632) 1 NC_015422.1 hypothetical protein 4923632 10485761 Alide2_4684 Alicycliphilus denitrificans K601 hypothetical protein YP_004390500.1 4922970 R 596154 CDS YP_004390501.1 330827198 10485762 complement(4923785..4925452) 1 NC_015422.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: ajs:Ajs_4093 twin-arginine translocation pathway signal; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 4925452 10485762 Alide2_4685 Alicycliphilus denitrificans K601 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004390501.1 4923785 R 596154 CDS YP_004390502.1 330827199 10485763 complement(4925452..4927005) 1 NC_015422.1 HAMAP: Spermine synthase; KEGG: dia:Dtpsy_3446 spermidine synthase; PFAM: Spermine synthase; spermidine synthase 4927005 10485763 Alide2_4686 Alicycliphilus denitrificans K601 spermidine synthase YP_004390502.1 4925452 R 596154 CDS YP_004390503.1 330827200 10485764 complement(4927019..4927240) 1 NC_015422.1 PFAM: Protein of unknown function DUF350; KEGG: dia:Dtpsy_3447 protein of unknown function DUF350; hypothetical protein 4927240 10485764 Alide2_4687 Alicycliphilus denitrificans K601 hypothetical protein YP_004390503.1 4927019 R 596154 CDS YP_004390504.1 330827201 10485765 complement(4927277..4928761) 1 NC_015422.1 KEGG: dia:Dtpsy_3448 putative transmembrane protein; transmembrane protein 4928761 10485765 Alide2_4688 Alicycliphilus denitrificans K601 transmembrane protein YP_004390504.1 4927277 R 596154 CDS YP_004390505.1 330827202 10485766 complement(4928830..4929867) 1 NC_015422.1 PFAM: Band 7 protein; KEGG: ajs:Ajs_4099 putative transmembrane protein; hypothetical protein 4929867 10485766 Alide2_4689 Alicycliphilus denitrificans K601 hypothetical protein YP_004390505.1 4928830 R 596154 CDS YP_004390506.1 330827203 10485767 4930036..4930344 1 NC_015422.1 PFAM: Protein of unknown function DUF2061, membrane; KEGG: dia:Dtpsy_3450 hypothetical protein; hypothetical protein 4930344 10485767 Alide2_4690 Alicycliphilus denitrificans K601 hypothetical protein YP_004390506.1 4930036 D 596154 CDS YP_004390507.1 330827204 10485768 complement(4930266..4930589) 1 NC_015422.1 PFAM: Flagellar basal body rod protein, N-terminal; Domain of unknown function DUF1078, C-terminal; KEGG: dia:Dtpsy_3453 flagellar basal body rod protein; flagellar basal body rod protein 4930589 10485768 Alide2_4691 Alicycliphilus denitrificans K601 flagellar basal body rod protein YP_004390507.1 4930266 R 596154 CDS YP_004390508.1 330827205 10485769 complement(4930651..4931595) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_3454 transcriptional regulator, LysR family; LysR family transcriptional regulator 4931595 10485769 Alide2_4692 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390508.1 4930651 R 596154 CDS YP_004390509.1 330827206 10485770 4931687..4933042 1 NC_015422.1 KEGG: xtr:100492879 omega-amino acid--pyruvate aminotransferase-like; PFAM: Aminotransferase class-III; beta-alanine--pyruvate transaminase 4933042 10485770 Alide2_4693 Alicycliphilus denitrificans K601 beta-alanine--pyruvate transaminase YP_004390509.1 4931687 D 596154 CDS YP_004390510.1 330827207 10485771 4933112..4934629 1 NC_015422.1 TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: dia:Dtpsy_3456 methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; methylmalonate-semialdehyde dehydrogenase 4934629 10485771 Alide2_4694 Alicycliphilus denitrificans K601 methylmalonate-semialdehyde dehydrogenase YP_004390510.1 4933112 D 596154 CDS YP_004390511.1 330827208 10485772 4934721..4935854 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; MASE2; KEGG: aav:Aave_4748 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 4935854 10485772 Alide2_4695 Alicycliphilus denitrificans K601 diguanylate cyclase YP_004390511.1 4934721 D 596154 CDS YP_004390512.1 330827209 10485773 complement(4935867..4936706) 1 NC_015422.1 KEGG: dia:Dtpsy_3457 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator 4936706 10485773 Alide2_4696 Alicycliphilus denitrificans K601 GntR family transcriptional regulator YP_004390512.1 4935867 R 596154 CDS YP_004390513.1 330827210 10485774 4936928..4938133 1 NC_015422.1 KEGG: dia:Dtpsy_3458 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4938133 10485774 Alide2_4697 Alicycliphilus denitrificans K601 extracellular ligand-binding receptor YP_004390513.1 4936928 D 596154 CDS YP_004390514.1 330827211 10485775 4938168..4939028 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dia:Dtpsy_3459 inner-membrane translocator; ABC transporter permease 4939028 10485775 Alide2_4698 Alicycliphilus denitrificans K601 ABC transporter permease YP_004390514.1 4938168 D 596154 CDS YP_004390515.1 330827212 10485776 4939034..4940029 1 NC_015422.1 PFAM: ABC transporter permease; KEGG: dac:Daci_6025 inner-membrane translocator; ABC transporter permease 4940029 10485776 Alide2_4699 Alicycliphilus denitrificans K601 ABC transporter permease YP_004390515.1 4939034 D 596154 CDS YP_004390516.1 330827213 10485777 4940026..4940808 1 NC_015422.1 PFAM: ABC transporter-like; KEGG: dia:Dtpsy_3461 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase 4940808 10485777 Alide2_4700 Alicycliphilus denitrificans K601 monosaccharide-transporting ATPase YP_004390516.1 4940026 D 596154 CDS YP_004390517.1 330827214 10485778 4940805..4941581 1 NC_015422.1 KEGG: dac:Daci_6027 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 4941581 10485778 Alide2_4701 Alicycliphilus denitrificans K601 ABC transporter YP_004390517.1 4940805 D 596154 CDS YP_004390518.1 330827215 10485779 4941595..4942851 1 NC_015422.1 TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: dia:Dtpsy_3463 amidase, hydantoinase/carbamoylase family; PFAM: Peptidase M20; Peptidase M20, dimerisation; hydantoinase/carbamoylase family amidase 4942851 10485779 Alide2_4702 Alicycliphilus denitrificans K601 hydantoinase/carbamoylase family amidase YP_004390518.1 4941595 D 596154 CDS YP_004390519.1 330827216 10485780 4942848..4944314 1 NC_015422.1 PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: dia:Dtpsy_3464 microcystin LR degradation protein MlrC-like protein; microcystin LR degradation protein MlrC 4944314 10485780 Alide2_4703 Alicycliphilus denitrificans K601 microcystin LR degradation protein MlrC YP_004390519.1 4942848 D 596154 CDS YP_004390520.1 330827217 10485781 4944462..4946771 1 NC_015422.1 KEGG: dia:Dtpsy_3465 malic enzyme; PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding; phosphate acetyl/butaryl transferase 4946771 10485781 Alide2_4704 Alicycliphilus denitrificans K601 phosphate acetyl/butaryl transferase YP_004390520.1 4944462 D 596154 CDS YP_004390521.1 330827218 10485782 4946905..4947309 1 NC_015422.1 PFAM: Guanine-specific ribonuclease N1/T1; KEGG: dia:Dtpsy_3466 guanine-specific ribonuclease N1 and T1; guanine-specific ribonuclease N1 and T1 4947309 10485782 Alide2_4705 Alicycliphilus denitrificans K601 guanine-specific ribonuclease N1 and T1 YP_004390521.1 4946905 D 596154 CDS YP_004390522.1 330827219 10485783 4947450..4947875 1 NC_015422.1 PFAM: Barstar (barnase inhibitor); KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor); barnase inhibitor 4947875 10485783 Alide2_4706 Alicycliphilus denitrificans K601 barnase inhibitor YP_004390522.1 4947450 D 596154 CDS YP_004390523.1 330827220 10485784 complement(4948105..4948872) 1 NC_015422.1 TIGRFAM: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase; KEGG: dia:Dtpsy_3468 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; dimethyladenosine transferase 4948872 10485784 Alide2_4707 Alicycliphilus denitrificans K601 dimethyladenosine transferase YP_004390523.1 4948105 R 596154 CDS YP_004390524.1 330827221 10485785 complement(4948869..4950284) 1 NC_015422.1 KEGG: dia:Dtpsy_3469 SurA domain protein; HAMAP: Peptidyl-prolyl isomerase SurA; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type; chaperone surA 4950284 10485785 Alide2_4708 Alicycliphilus denitrificans K601 chaperone surA YP_004390524.1 4948869 R 596154 CDS YP_004390525.1 330827222 10485786 complement(4950318..4952762) 1 NC_015422.1 KEGG: dia:Dtpsy_3470 organic solvent tolerance protein; HAMAP: Lipopolysccharide assembly, LptD; PFAM: Organic solvent tolerance protein, C-terminal; LPS-assembly protein lptD 4952762 10485786 Alide2_4709 Alicycliphilus denitrificans K601 LPS-assembly protein lptD YP_004390525.1 4950318 R 596154 CDS YP_004390526.1 330827223 10485787 4952836..4953951 1 NC_015422.1 PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_4113 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4953951 10485787 Alide2_4710 Alicycliphilus denitrificans K601 aminoglycoside phosphotransferase YP_004390526.1 4952836 D 596154 CDS YP_004390527.1 330827224 10485788 4954019..4954732 1 NC_015422.1 KEGG: dia:Dtpsy_3472 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E; ribosomal RNA small subunit methyltransferase E 4954732 10485788 Alide2_4711 Alicycliphilus denitrificans K601 ribosomal RNA small subunit methyltransferase E YP_004390527.1 4954019 D 596154 CDS YP_004390528.1 330827225 10485789 4954732..4956066 1 NC_015422.1 KEGG: dia:Dtpsy_3473 hypothetical protein; hypothetical protein 4956066 10485789 Alide2_4712 Alicycliphilus denitrificans K601 hypothetical protein YP_004390528.1 4954732 D 596154 CDS YP_004390529.1 330827226 10485790 4956059..4956763 1 NC_015422.1 KEGG: ajs:Ajs_4116 hypothetical protein; hypothetical protein 4956763 10485790 Alide2_4713 Alicycliphilus denitrificans K601 hypothetical protein YP_004390529.1 4956059 D 596154 CDS YP_004390530.1 330827227 10485791 4956764..4959601 1 NC_015422.1 PFAM: RecF/RecN/SMC; KEGG: dia:Dtpsy_3475 SMC domain protein; SMC domain-containing protein 4959601 10485791 Alide2_4714 Alicycliphilus denitrificans K601 SMC domain-containing protein YP_004390530.1 4956764 D 596154 CDS YP_004390531.1 330827228 10485792 complement(4959674..4961137) 1 NC_015422.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; KEGG: dia:Dtpsy_3479 peptidase M20; peptidase M20 4961137 10485792 Alide2_4715 Alicycliphilus denitrificans K601 peptidase M20 YP_004390531.1 4959674 R 596154 CDS YP_004390532.1 330827229 10485793 complement(4961211..4962398) 1 NC_015422.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_3480 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 4962398 10485793 Alide2_4716 Alicycliphilus denitrificans K601 diguanylate cyclase YP_004390532.1 4961211 R 596154 CDS YP_004390533.1 330827230 10485794 complement(4962608..4963192) 1 NC_015422.1 KEGG: dia:Dtpsy_3482 methionine biosynthesis protein MetW; TIGRFAM: Methionine biosynthesis MetW; PFAM: Methionine biosynthesis MetW; methionine biosynthesis protein MetW 4963192 10485794 Alide2_4717 Alicycliphilus denitrificans K601 methionine biosynthesis protein MetW YP_004390533.1 4962608 R 596154 CDS YP_004390534.1 330827231 10485795 complement(4963189..4964319) 1 NC_015422.1 TIGRFAM: Homoserine acetyltransferase; KEGG: ajs:Ajs_4125 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; homoserine O-acetyltransferase 4964319 10485795 Alide2_4718 Alicycliphilus denitrificans K601 homoserine O-acetyltransferase YP_004390534.1 4963189 R 596154 CDS YP_004390535.1 330827232 10485796 complement(4964452..4965030) 1 NC_015422.1 PFAM: Uncharacterised protein family UPF0016; KEGG: dia:Dtpsy_3484 protein of unknown function UPF0016; hypothetical protein 4965030 10485796 Alide2_4719 Alicycliphilus denitrificans K601 hypothetical protein YP_004390535.1 4964452 R 596154 CDS YP_004390536.1 330827233 10485797 4965502..4965852 1 NC_015422.1 KEGG: dia:Dtpsy_3485 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain; RNP-1 like RNA-binding protein 4965852 10485797 Alide2_4720 Alicycliphilus denitrificans K601 RNP-1 like RNA-binding protein YP_004390536.1 4965502 D 596154 CDS YP_004390537.1 330827234 10485798 4966088..4966522 1 NC_015422.1 KEGG: ajs:Ajs_4128 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain; RNP-1 like RNA-binding protein 4966522 10485798 Alide2_4721 Alicycliphilus denitrificans K601 RNP-1 like RNA-binding protein YP_004390537.1 4966088 D 596154 CDS YP_004390538.1 330827235 10485799 complement(4966609..4967403) 1 NC_015422.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_4129 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4967403 10485799 Alide2_4722 Alicycliphilus denitrificans K601 short-chain dehydrogenase/reductase SDR YP_004390538.1 4966609 R 596154 CDS YP_004390539.1 330827236 10485800 complement(4967414..4968055) 1 NC_015422.1 PFAM: Lipopolysccharide assembly, LptC-related; KEGG: dia:Dtpsy_3488 protein of unknown function DUF1239; hypothetical protein 4968055 10485800 Alide2_4723 Alicycliphilus denitrificans K601 hypothetical protein YP_004390539.1 4967414 R 596154 CDS YP_004390540.1 330827237 10485801 complement(4968052..4968624) 1 NC_015422.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; KEGG: dia:Dtpsy_3489 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; PFAM: HAD superfamily hydrolase-like, type 3; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4968624 10485801 Alide2_4724 Alicycliphilus denitrificans K601 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_004390540.1 4968052 R 596154 CDS YP_004390541.1 330827238 10485802 complement(4968624..4969625) 1 NC_015422.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: KpsF/GutQ; KEGG: ajs:Ajs_4132 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core; KpsF/GutQ family protein 4969625 10485802 Alide2_4725 Alicycliphilus denitrificans K601 KpsF/GutQ family protein YP_004390541.1 4968624 R 596154 CDS YP_004390542.1 330827239 10485803 4969674..4971659 1 NC_015422.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: ajs:Ajs_4133 potassium efflux system protein; sodium/hydrogen exchanger 4971659 10485803 Alide2_4726 Alicycliphilus denitrificans K601 sodium/hydrogen exchanger YP_004390542.1 4969674 D 596154 CDS YP_004390543.1 330827240 10485804 4971697..4972251 1 NC_015422.1 TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: dia:Dtpsy_3492 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; adenine phosphoribosyltransferase 4972251 10485804 Alide2_4727 Alicycliphilus denitrificans K601 adenine phosphoribosyltransferase YP_004390543.1 4971697 D 596154 CDS YP_004390544.1 330827241 10485805 complement(4972298..4973185) 1 NC_015422.1 KEGG: ajs:Ajs_4136 hypothetical protein; hypothetical protein 4973185 10485805 Alide2_4728 Alicycliphilus denitrificans K601 hypothetical protein YP_004390544.1 4972298 R 596154 CDS YP_004390545.1 330827242 10485806 complement(4973308..4973793) 1 NC_015422.1 KEGG: dia:Dtpsy_3494 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator 4973793 10485806 Alide2_4729 Alicycliphilus denitrificans K601 Crp/Fnr family transcriptional regulator YP_004390545.1 4973308 R 596154 CDS YP_004390546.1 330827243 10485807 complement(4973876..4975273) 1 NC_015422.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: ajs:Ajs_4138 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; tRNA modification GTPase mnmE 4975273 10485807 Alide2_4730 Alicycliphilus denitrificans K601 tRNA modification GTPase mnmE YP_004390546.1 4973876 R 596154 CDS YP_004390547.1 330827244 10485808 complement(4975351..4976238) 1 NC_015422.1 KEGG: aav:Aave_1937 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 4976238 10485808 Alide2_4731 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004390547.1 4975351 R 596154 CDS YP_004390548.1 330827245 10485809 4976508..4977704 1 NC_015422.1 KEGG: vap:Vapar_1545 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase 4977704 10485809 Alide2_4732 Alicycliphilus denitrificans K601 D-amino-acid dehydrogenase YP_004390548.1 4976508 D 596154 CDS YP_004390549.1 330827246 10485810 complement(4977708..4978613) 1 NC_015422.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_1935 LysR family transcriptional regulator; LysR family transcriptional regulator 4978613 10485810 Alide2_4733 Alicycliphilus denitrificans K601 LysR family transcriptional regulator YP_004390549.1 4977708 R 596154 CDS YP_004390550.1 330827247 10485811 complement(4978642..4979382) 1 NC_015422.1 KEGG: aav:Aave_1663 aspartate racemase; TIGRFAM: Aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; aspartate racemase 4979382 10485811 Alide2_4734 Alicycliphilus denitrificans K601 aspartate racemase YP_004390550.1 4978642 R 596154 CDS YP_004390551.1 330827248 10485812 complement(4979379..4980197) 1 NC_015422.1 PFAM: Peptidase M55, D-aminopeptidase; KEGG: aav:Aave_1662 D-aminopeptidase DppA; peptidase M55 D-aminopeptidase 4980197 10485812 Alide2_4735 Alicycliphilus denitrificans K601 peptidase M55 D-aminopeptidase YP_004390551.1 4979379 R 596154 CDS YP_004390552.1 330827249 10485813 complement(4980262..4981299) 1 NC_015422.1 PFAM: Peptidase S58, DmpA; KEGG: aav:Aave_1661 aminopeptidase DmpA; peptidase S58 DmpA 4981299 10485813 Alide2_4736 Alicycliphilus denitrificans K601 peptidase S58 DmpA YP_004390552.1 4980262 R 596154 CDS YP_004390553.1 330827250 10485814 complement(4981296..4982204) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1660 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 4982204 10485814 Alide2_4737 Alicycliphilus denitrificans K601 ABC transporter permease YP_004390553.1 4981296 R 596154 CDS YP_004390554.1 330827251 10485815 complement(4982212..4983132) 1 NC_015422.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1659 binding-protein-dependent transport systems inner membrane component; ABC transporter permease 4983132 10485815 Alide2_4738 Alicycliphilus denitrificans K601 ABC transporter permease YP_004390554.1 4982212 R 596154 CDS YP_004390555.1 330827252 10485816 complement(4983201..4984745) 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: aav:Aave_1658 extracellular solute-binding protein; ABC transporter substrate-binding protein 4984745 10485816 Alide2_4739 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004390555.1 4983201 R 596154 CDS YP_004390556.1 330827253 10485817 complement(4984837..4986711) 1 NC_015422.1 TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: aav:Aave_1657 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core; peptide ABC transporter ATPase 4986711 10485817 Alide2_4740 Alicycliphilus denitrificans K601 peptide ABC transporter ATPase YP_004390556.1 4984837 R 596154 CDS YP_004390557.1 330827254 10485818 complement(4986728..4987726) 1 NC_015422.1 KEGG: aav:Aave_1656 asparaginase; PFAM: Peptidase T2, asparaginase 2; beta-aspartyl-peptidase 4987726 10485818 Alide2_4741 Alicycliphilus denitrificans K601 beta-aspartyl-peptidase YP_004390557.1 4986728 R 596154 CDS YP_004390558.1 330827255 10485819 complement(4987723..4988655) 1 NC_015422.1 PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: aav:Aave_1655 RpiR family transcriptional regulator; RpiR family transcriptional regulator 4988655 10485819 Alide2_4742 Alicycliphilus denitrificans K601 RpiR family transcriptional regulator YP_004390558.1 4987723 R 596154 CDS YP_004390559.1 330827256 10485822 complement(4990775..4992361) 1 NC_015422.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ajs:Ajs_4139 extracellular solute-binding protein; ABC transporter substrate-binding protein 4992361 10485822 Alide2_4745 Alicycliphilus denitrificans K601 ABC transporter substrate-binding protein YP_004390559.1 4990775 R 596154 CDS YP_004390560.1 330827257 10485823 complement(4992469..4994163) 1 NC_015422.1 KEGG: dia:Dtpsy_3542 YidC translocase/secretase; TIGRFAM: Membrane insertion protein, OxaA/YidC, bacterial; Membrane insertion protein, OxaA/YidC; PFAM: Membrane insertion protein, OxaA/YidC; membrane protein insertase, YidC/Oxa1 family domain-containing 4994163 10485823 Alide2_4746 Alicycliphilus denitrificans K601 membrane protein insertase, YidC/Oxa1 family domain-containing YP_004390560.1 4992469 R 596154 CDS YP_004390561.1 330827258 10485824 complement(4994160..4994453) 1 NC_015422.1 KEGG: ajs:Ajs_4141 hypothetical protein; TIGRFAM: Protein of unknown function DUF37; PFAM: Protein of unknown function DUF37; hypothetical protein 4994453 10485824 Alide2_4747 Alicycliphilus denitrificans K601 hypothetical protein YP_004390561.1 4994160 R 596154 CDS YP_004390562.1 330827259 10485825 complement(4994450..4994890) 1 NC_015422.1 PFAM: Ribonuclease P; KEGG: dia:Dtpsy_3544 hypothetical protein; ribonuclease P protein 4994890 10485825 Alide2_4748 Alicycliphilus denitrificans K601 ribonuclease P protein YP_004390562.1 4994450 R 596154 CDS YP_004390563.1 330827260 10485826 complement(4994933..4995067) 1 NC_015422.1 TIGRFAM: Ribosomal protein L34; HAMAP: Ribosomal protein L34; KEGG: vei:Veis_5015 50S ribosomal protein L34; PFAM: Ribosomal protein L34; 50S ribosomal protein L34 4995067 10485826 Alide2_4749 Alicycliphilus denitrificans K601 50S ribosomal protein L34 YP_004390563.1 4994933 R 596154 CDS YP_004390564.1 330827326 10485917 17..394 1 NC_015423.1 KEGG: ajs:Ajs_4195 hypothetical protein; hypothetical protein 394 10485917 Alide2_4750 Alicycliphilus denitrificans K601 hypothetical protein YP_004390564.1 17 D 596154 CDS YP_004390565.1 330827327 10485829 396..2393 1 NC_015423.1 PFAM: Type IV secretion system, TraD, DNA-binding domain; Ti-type conjugative transfer system, TraG-like; KEGG: ajs:Ajs_4194 hypothetical protein; type IV secretion system protein TraD 2393 10485829 Alide2_4751 Alicycliphilus denitrificans K601 type IV secretion system protein TraD YP_004390565.1 396 D 596154 CDS YP_004390566.1 330827328 10485830 2405..2860 1 NC_015423.1 KEGG: ajs:Ajs_4193 putative thiol:disulfide interchange transmembrane protein; putative thiol:disulfide interchange transmembrane protein 2860 10485830 Alide2_4752 Alicycliphilus denitrificans K601 putative thiol:disulfide interchange transmembrane protein YP_004390566.1 2405 D 596154 CDS YP_004390567.1 330827329 10485831 2857..5742 1 NC_015423.1 KEGG: ajs:Ajs_4192 TrwC protein; TIGRFAM: Conjugative relaxase, N-terminal; PFAM: TrwC relaxase; conjugative relaxase domain-containing protein 5742 10485831 Alide2_4753 Alicycliphilus denitrificans K601 conjugative relaxase domain-containing protein YP_004390567.1 2857 D 596154 CDS YP_004390568.1 330827330 10485832 5884..6096 1 NC_015423.1 hypothetical protein 6096 10485832 Alide2_4754 Alicycliphilus denitrificans K601 hypothetical protein YP_004390568.1 5884 D 596154 CDS YP_004390569.1 330827331 10485833 6187..7041 1 NC_015423.1 PFAM: YheO-like; KEGG: ajs:Ajs_4191 hypothetical protein; YheO-like domain-containing protein 7041 10485833 Alide2_4755 Alicycliphilus denitrificans K601 YheO-like domain-containing protein YP_004390569.1 6187 D 596154 CDS YP_004390570.1 330827332 10485834 7074..7349 1 NC_015423.1 PFAM: Protein of unknown function DUF1805; KEGG: ajs:Ajs_4190 hypothetical protein; hypothetical protein 7349 10485834 Alide2_4756 Alicycliphilus denitrificans K601 hypothetical protein YP_004390570.1 7074 D 596154 CDS YP_004390571.1 330827333 10485835 7358..8326 1 NC_015423.1 KEGG: ajs:Ajs_4189 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; integral membrane sensor signal transduction histidine kinase 8326 10485835 Alide2_4757 Alicycliphilus denitrificans K601 integral membrane sensor signal transduction histidine kinase YP_004390571.1 7358 D 596154 CDS YP_004390572.1 330827334 10485836 complement(8295..8954) 1 NC_015423.1 KEGG: ajs:Ajs_4188 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator 8954 10485836 Alide2_4758 Alicycliphilus denitrificans K601 two component LuxR family transcriptional regulator YP_004390572.1 8295 R 596154 CDS YP_004390573.1 330827335 10485837 9438..9938 1 NC_015423.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_4187 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 9938 10485837 Alide2_4759 Alicycliphilus denitrificans K601 lytic transglycosylase catalytic subunit YP_004390573.1 9438 D 596154 CDS YP_004390574.1 330827336 10485838 9940..10323 1 NC_015423.1 KEGG: ajs:Ajs_4186 hypothetical protein; hypothetical protein 10323 10485838 Alide2_4760 Alicycliphilus denitrificans K601 hypothetical protein YP_004390574.1 9940 D 596154 CDS YP_004390575.1 330827337 10485839 10418..10750 1 NC_015423.1 PFAM: Conjugal transfer,TrbC; KEGG: ajs:Ajs_4185 hypothetical protein; Conjugal transfer protein TrbC 10750 10485839 Alide2_4761 Alicycliphilus denitrificans K601 Conjugal transfer protein TrbC YP_004390575.1 10418 D 596154 CDS YP_004390576.1 330827338 10485840 10766..11059 1 NC_015423.1 KEGG: ajs:Ajs_4184 hypothetical protein; TIGRFAM: Type IV conjugative transfer system, protein TraL; PFAM: Type IV conjugative transfer system, protein TraL; type IV conjugative transfer system protein TraL 11059 10485840 Alide2_4762 Alicycliphilus denitrificans K601 type IV conjugative transfer system protein TraL YP_004390576.1 10766 D 596154 CDS YP_004390577.1 330827339 10485841 11074..11667 1 NC_015423.1 KEGG: ajs:Ajs_4183 hypothetical protein; hypothetical protein 11667 10485841 Alide2_4763 Alicycliphilus denitrificans K601 hypothetical protein YP_004390577.1 11074 D 596154 CDS YP_004390578.1 330827340 10485842 11777..12340 1 NC_015423.1 KEGG: ajs:Ajs_4182 hypothetical protein; hypothetical protein 12340 10485842 Alide2_4764 Alicycliphilus denitrificans K601 hypothetical protein YP_004390578.1 11777 D 596154 CDS YP_004390579.1 330827341 10485843 12333..13682 1 NC_015423.1 PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: ajs:Ajs_4181 TraB pilus assembly family protein; conjugation TrbI family protein 13682 10485843 Alide2_4765 Alicycliphilus denitrificans K601 conjugation TrbI family protein YP_004390579.1 12333 D 596154 CDS YP_004390580.1 330827342 10485844 13675..14424 1 NC_015423.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_4180 protein-disulfide isomerase; disulfide bond isomerase, DsbC/G 14424 10485844 Alide2_4766 Alicycliphilus denitrificans K601 disulfide bond isomerase, DsbC/G YP_004390580.1 13675 D 596154 CDS YP_004390581.1 330827343 10485845 14421..14570 1 NC_015423.1 hypothetical protein 14570 10485845 Alide2_4767 Alicycliphilus denitrificans K601 hypothetical protein YP_004390581.1 14421 D 596154 CDS YP_004390582.1 330827344 10485846 14567..15217 1 NC_015423.1 KEGG: ajs:Ajs_4179 membrane lipoprotein lipid attachment site; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV; type IV conjugative transfer system protein TraV 15217 10485846 Alide2_4768 Alicycliphilus denitrificans K601 type IV conjugative transfer system protein TraV YP_004390582.1 14567 D 596154 CDS YP_004390583.1 330827345 10485847 15255..17879 1 NC_015423.1 TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_4178 hypothetical protein; type-IV secretion system protein TraC 17879 10485847 Alide2_4769 Alicycliphilus denitrificans K601 type-IV secretion system protein TraC YP_004390583.1 15255 D 596154 CDS YP_004390584.1 330827346 10485848 17869..18297 1 NC_015423.1 KEGG: ajs:Ajs_4177 hypothetical protein; hypothetical protein 18297 10485848 Alide2_4770 Alicycliphilus denitrificans K601 hypothetical protein YP_004390584.1 17869 D 596154 CDS YP_004390585.1 330827347 10485849 18297..18773 1 NC_015423.1 PFAM: Peptidase S26, conserved region; KEGG: ajs:Ajs_4176 hypothetical protein; peptidase S26 18773 10485849 Alide2_4771 Alicycliphilus denitrificans K601 peptidase S26 YP_004390585.1 18297 D 596154 CDS YP_004390586.1 330827348 10485850 18760..19398 1 NC_015423.1 TIGRFAM: Type-F conjugative transfer system protein TraW; KEGG: ajs:Ajs_4175 hypothetical protein; type-F conjugative transfer system protein TraW 19398 10485850 Alide2_4772 Alicycliphilus denitrificans K601 type-F conjugative transfer system protein TraW YP_004390586.1 18760 D 596154 CDS YP_004390587.1 330827349 10485851 19395..20396 1 NC_015423.1 PFAM: TraU; KEGG: ajs:Ajs_4174 TraU family protein; TraU family protein 20396 10485851 Alide2_4773 Alicycliphilus denitrificans K601 TraU family protein YP_004390587.1 19395 D 596154 CDS YP_004390588.1 330827350 10485852 20396..21172 1 NC_015423.1 KEGG: ajs:Ajs_4173 hypothetical protein; TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC, subgroup; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; type-F conjugative transfer system pilin assembly protein TrbC 21172 10485852 Alide2_4774 Alicycliphilus denitrificans K601 type-F conjugative transfer system pilin assembly protein TrbC YP_004390588.1 20396 D 596154 CDS YP_004390589.1 330827351 10485853 21169..22467 1 NC_015423.1 KEGG: ajs:Ajs_4172 hypothetical protein; hypothetical protein 22467 10485853 Alide2_4775 Alicycliphilus denitrificans K601 hypothetical protein YP_004390589.1 21169 D 596154 CDS YP_004390590.1 330827352 10485854 22464..23708 1 NC_015423.1 PFAM: Mating pair stabilisation TraN; KEGG: ajs:Ajs_4171 conjugal transfer mating pair stabilization protein TraN; Mating pair stabilization TraN 23708 10485854 Alide2_4776 Alicycliphilus denitrificans K601 Mating pair stabilization TraN YP_004390590.1 22464 D 596154 CDS YP_004390591.1 330827353 10485855 23705..24067 1 NC_015423.1 KEGG: ajs:Ajs_4170 hypothetical protein; hypothetical protein 24067 10485855 Alide2_4777 Alicycliphilus denitrificans K601 hypothetical protein YP_004390591.1 23705 D 596154 CDS YP_004390592.1 330827354 10485856 24072..24884 1 NC_015423.1 KEGG: ajs:Ajs_4169 hypothetical protein; hypothetical protein 24884 10485856 Alide2_4778 Alicycliphilus denitrificans K601 hypothetical protein YP_004390592.1 24072 D 596154 CDS YP_004390593.1 330827355 10485857 24895..26301 1 NC_015423.1 PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_4168 TraH family protein; TraH family protein 26301 10485857 Alide2_4779 Alicycliphilus denitrificans K601 TraH family protein YP_004390593.1 24895 D 596154 CDS YP_004390594.1 330827356 10485858 26313..29360 1 NC_015423.1 PFAM: TraG-like, N-terminal; KEGG: ajs:Ajs_4167 TraG domain-containing protein; TraG domain-containing protein 29360 10485858 Alide2_4780 Alicycliphilus denitrificans K601 TraG domain-containing protein YP_004390594.1 26313 D 596154 CDS YP_004390595.1 330827357 10485859 complement(29696..29950) 1 NC_015423.1 KEGG: ajs:Ajs_4166 hypothetical protein; hypothetical protein 29950 10485859 Alide2_4781 Alicycliphilus denitrificans K601 hypothetical protein YP_004390595.1 29696 R 596154 CDS YP_004390596.1 330827358 10485860 30439..31164 1 NC_015423.1 PFAM: Peptidase M48; KEGG: ajs:Ajs_4164 peptidase M48, Ste24p; peptidase M48 Ste24p 31164 10485860 Alide2_4782 Alicycliphilus denitrificans K601 peptidase M48 Ste24p YP_004390596.1 30439 D 596154 CDS YP_004390597.1 330827359 10485861 31172..31432 1 NC_015423.1 KEGG: ajs:Ajs_4163 hypothetical protein; hypothetical protein 31432 10485861 Alide2_4783 Alicycliphilus denitrificans K601 hypothetical protein YP_004390597.1 31172 D 596154 CDS YP_004390598.1 330827360 10485862 31432..31851 1 NC_015423.1 KEGG: ajs:Ajs_4247 hypothetical protein; hypothetical protein 31851 10485862 Alide2_4784 Alicycliphilus denitrificans K601 hypothetical protein YP_004390598.1 31432 D 596154 CDS YP_004390599.1 330827361 10485863 31848..32372 1 NC_015423.1 KEGG: ajs:Ajs_4246 hypothetical protein; hypothetical protein 32372 10485863 Alide2_4785 Alicycliphilus denitrificans K601 hypothetical protein YP_004390599.1 31848 D 596154 CDS YP_004390600.1 330827362 10485864 32396..32764 1 NC_015423.1 KEGG: ajs:Ajs_4245 hypothetical protein; hypothetical protein 32764 10485864 Alide2_4786 Alicycliphilus denitrificans K601 hypothetical protein YP_004390600.1 32396 D 596154 CDS YP_004390601.1 330827363 10485865 32890..33135 1 NC_015423.1 KEGG: ajs:Ajs_4244 hypothetical protein; hypothetical protein 33135 10485865 Alide2_4787 Alicycliphilus denitrificans K601 hypothetical protein YP_004390601.1 32890 D 596154 CDS YP_004390602.1 330827364 10485866 33148..33375 1 NC_015423.1 KEGG: ajs:Ajs_4243 hypothetical protein; hypothetical protein 33375 10485866 Alide2_4788 Alicycliphilus denitrificans K601 hypothetical protein YP_004390602.1 33148 D 596154 CDS YP_004390603.1 330827365 10485867 33372..34460 1 NC_015423.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: ajs:Ajs_4242 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic 34460 10485867 Alide2_4789 Alicycliphilus denitrificans K601 filamentation induced by cAMP protein Fic YP_004390603.1 33372 D 596154 CDS YP_004390604.1 330827366 10485868 34493..34954 1 NC_015423.1 KEGG: ajs:Ajs_4241 hypothetical protein; hypothetical protein 34954 10485868 Alide2_4790 Alicycliphilus denitrificans K601 hypothetical protein YP_004390604.1 34493 D 596154 CDS YP_004390605.1 330827367 10485869 34967..35227 1 NC_015423.1 KEGG: ajs:Ajs_4240 hypothetical protein; hypothetical protein 35227 10485869 Alide2_4791 Alicycliphilus denitrificans K601 hypothetical protein YP_004390605.1 34967 D 596154 CDS YP_004390606.1 330827368 10485870 35245..36927 1 NC_015423.1 PFAM: Zeta toxin; KEGG: ajs:Ajs_4239 zeta toxin family protein; Zeta toxin family protein 36927 10485870 Alide2_4792 Alicycliphilus denitrificans K601 Zeta toxin family protein YP_004390606.1 35245 D 596154 CDS YP_004390607.1 330827369 10485871 36943..38154 1 NC_015423.1 PFAM: Protein of unknown function DUF1173; KEGG: ajs:Ajs_4238 hypothetical protein; hypothetical protein 38154 10485871 Alide2_4793 Alicycliphilus denitrificans K601 hypothetical protein YP_004390607.1 36943 D 596154 CDS YP_004390608.1 330827370 10485872 38151..38675 1 NC_015423.1 KEGG: ajs:Ajs_4237 hypothetical protein; hypothetical protein 38675 10485872 Alide2_4794 Alicycliphilus denitrificans K601 hypothetical protein YP_004390608.1 38151 D 596154 CDS YP_004390609.1 330827371 10485873 38831..39106 1 NC_015423.1 KEGG: ajs:Ajs_4236 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 39106 10485873 Alide2_4795 Alicycliphilus denitrificans K601 histone family protein DNA-binding protein YP_004390609.1 38831 D 596154 CDS YP_004390610.1 330827372 10485874 39110..40165 1 NC_015423.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: ajs:Ajs_4235 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 40165 10485874 Alide2_4796 Alicycliphilus denitrificans K601 OmpA/MotB domain-containing protein YP_004390610.1 39110 D 596154 CDS YP_004390611.1 330827373 10485875 40223..40993 1 NC_015423.1 KEGG: azo:azo0081 hypothetical protein; hypothetical protein 40993 10485875 Alide2_4797 Alicycliphilus denitrificans K601 hypothetical protein YP_004390611.1 40223 D 596154 CDS YP_004390612.1 330827374 10485876 41020..41781 1 NC_015423.1 KEGG: ajs:Ajs_4232 hypothetical protein; hypothetical protein 41781 10485876 Alide2_4798 Alicycliphilus denitrificans K601 hypothetical protein YP_004390612.1 41020 D 596154 CDS YP_004390613.1 330827375 10485877 41778..42179 1 NC_015423.1 PFAM: Protein of unknown function DUF1294; KEGG: dac:Daci_5254 cold-shock DNA-binding domain-containing protein; hypothetical protein 42179 10485877 Alide2_4799 Alicycliphilus denitrificans K601 hypothetical protein YP_004390613.1 41778 D 596154 CDS YP_004390614.1 330827376 10485878 42176..42703 1 NC_015423.1 KEGG: ajs:Ajs_4231 aspartyl protease-like protein; aspartyl protease-like protein 42703 10485878 Alide2_4800 Alicycliphilus denitrificans K601 aspartyl protease-like protein YP_004390614.1 42176 D 596154 CDS YP_004390615.1 330827377 10485879 42700..43347 1 NC_015423.1 KEGG: ajs:Ajs_4230 metal dependent phosphohydrolase; metal dependent phosphohydrolase 43347 10485879 Alide2_4801 Alicycliphilus denitrificans K601 metal dependent phosphohydrolase YP_004390615.1 42700 D 596154 CDS YP_004390616.1 330827378 10485880 44064..44336 1 NC_015423.1 KEGG: gsu:GSU2163 hypothetical protein; hypothetical protein 44336 10485880 Alide2_4802 Alicycliphilus denitrificans K601 hypothetical protein YP_004390616.1 44064 D 596154 CDS YP_004390617.1 330827379 10485881 44346..44723 1 NC_015423.1 KEGG: ajs:Ajs_4227 hypothetical protein; hypothetical protein 44723 10485881 Alide2_4803 Alicycliphilus denitrificans K601 hypothetical protein YP_004390617.1 44346 D 596154 CDS YP_004390618.1 330827380 10485882 44727..45713 1 NC_015423.1 KEGG: eba:ebA4367 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Toprim domain; DNA primase, DnaB-helicase binding domain; SMART: Toprim domain; DNA primase catalytic core domain-containing protein 45713 10485882 Alide2_4804 Alicycliphilus denitrificans K601 DNA primase catalytic core domain-containing protein YP_004390618.1 44727 D 596154 CDS YP_004390619.1 330827381 10485883 45869..46288 1 NC_015423.1 KEGG: ajs:Ajs_4225 hypothetical protein; hypothetical protein 46288 10485883 Alide2_4805 Alicycliphilus denitrificans K601 hypothetical protein YP_004390619.1 45869 D 596154 CDS YP_004390620.1 330827382 10485884 46317..47099 1 NC_015423.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ajs:Ajs_4224 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 47099 10485884 Alide2_4806 Alicycliphilus denitrificans K601 Cobyrinic acid ac-diamide synthase YP_004390620.1 46317 D 596154 CDS YP_004390621.1 330827383 10485885 47112..48404 1 NC_015423.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_4223 ParB-like partition proteins; SMART: ParB-like nuclease; parB-like partition protein 48404 10485885 Alide2_4807 Alicycliphilus denitrificans K601 parB-like partition protein YP_004390621.1 47112 D 596154 CDS YP_004390622.1 330827384 10485886 48485..48865 1 NC_015423.1 KEGG: ajs:Ajs_4222 hypothetical protein; hypothetical protein 48865 10485886 Alide2_4808 Alicycliphilus denitrificans K601 hypothetical protein YP_004390622.1 48485 D 596154 CDS YP_004390623.1 330827385 10485887 48939..49262 1 NC_015423.1 KEGG: ajs:Ajs_4221 hypothetical protein; TIGRFAM: Addiction module killer protein, HI1419; PFAM: Protein of unknown function DUF891; addiction module killer protein 49262 10485887 Alide2_4809 Alicycliphilus denitrificans K601 addiction module killer protein YP_004390623.1 48939 D 596154 CDS YP_004390624.1 330827386 10485888 49259..49570 1 NC_015423.1 TIGRFAM: Addiction module antidote protein, HI1420; KEGG: vei:Veis_3350 putative transcriptional regulator; addiction module antidote protein 49570 10485888 Alide2_4810 Alicycliphilus denitrificans K601 addiction module antidote protein YP_004390624.1 49259 D 596154 CDS YP_004390625.1 330827387 10485889 49684..50646 1 NC_015423.1 PFAM: Replication initiator protein A; KEGG: ajs:Ajs_4219 hypothetical protein; Replication initiator protein A 50646 10485889 Alide2_4811 Alicycliphilus denitrificans K601 Replication initiator protein A YP_004390625.1 49684 D 596154 CDS YP_004390626.1 330827388 10485890 52151..53188 1 NC_015423.1 KEGG: ajs:Ajs_4218 hypothetical protein; hypothetical protein 53188 10485890 Alide2_4812 Alicycliphilus denitrificans K601 hypothetical protein YP_004390626.1 52151 D 596154 CDS YP_004390627.1 330827389 10485891 53185..53685 1 NC_015423.1 KEGG: ajs:Ajs_4216 hypothetical protein; hypothetical protein 53685 10485891 Alide2_4813 Alicycliphilus denitrificans K601 hypothetical protein YP_004390627.1 53185 D 596154 CDS YP_004390628.1 330827390 10485892 53896..54117 1 NC_015423.1 KEGG: ajs:Ajs_4215 hypothetical protein; hypothetical protein 54117 10485892 Alide2_4814 Alicycliphilus denitrificans K601 hypothetical protein YP_004390628.1 53896 D 596154 CDS YP_004390629.1 330827391 10485893 54121..55035 1 NC_015423.1 PFAM: C-5 cytosine methyltransferase; KEGG: ajs:Ajs_4214 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase 55035 10485893 Alide2_4815 Alicycliphilus denitrificans K601 C-5 cytosine-specific DNA methylase YP_004390629.1 54121 D 596154 CDS YP_004390630.1 330827392 10485894 55058..55675 1 NC_015423.1 SMART: Phospholipase D/Transphosphatidylase; KEGG: ajs:Ajs_4213 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme; phospholipase D/transphosphatidylase 55675 10485894 Alide2_4816 Alicycliphilus denitrificans K601 phospholipase D/transphosphatidylase YP_004390630.1 55058 D 596154 CDS YP_004390631.1 330827393 10485895 complement(55816..57345) 1 NC_015423.1 KEGG: dac:Daci_0165 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 57345 10485895 Alide2_4817 Alicycliphilus denitrificans K601 NodT family RND efflux system outer membrane lipoprotein YP_004390631.1 55816 R 596154 CDS YP_004390632.1 330827394 10485896 complement(57410..60577) 1 NC_015423.1 KEGG: kpe:KPK_1162 RND family multidrug efflux permease protein OqxB; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 60577 10485896 Alide2_4818 Alicycliphilus denitrificans K601 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_004390632.1 57410 R 596154 CDS YP_004390633.1 330827395 10485897 complement(60597..61796) 1 NC_015423.1 KEGG: xac:XAC1482 RND multidrug efflux membrane fusion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 61796 10485897 Alide2_4819 Alicycliphilus denitrificans K601 RND family efflux transporter MFP subunit YP_004390633.1 60597 R 596154 CDS YP_004390634.1 330827396 10485898 61938..62543 1 NC_015423.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3783 TetR family transcriptional regulator; TetR family transcriptional regulator 62543 10485898 Alide2_4820 Alicycliphilus denitrificans K601 TetR family transcriptional regulator YP_004390634.1 61938 D 596154 CDS YP_004390635.1 330827397 10485899 62613..63308 1 NC_015423.1 KEGG: ajs:Ajs_4212 hypothetical protein; hypothetical protein 63308 10485899 Alide2_4821 Alicycliphilus denitrificans K601 hypothetical protein YP_004390635.1 62613 D 596154 CDS YP_004390636.1 330827398 10485900 64078..64518 1 NC_015423.1 KEGG: ajs:Ajs_4211 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding; single-strand binding protein 64518 10485900 Alide2_4822 Alicycliphilus denitrificans K601 single-strand binding protein YP_004390636.1 64078 D 596154 CDS YP_004390637.1 330827399 10485901 64521..64700 1 NC_015423.1 hypothetical protein 64700 10485901 Alide2_4823 Alicycliphilus denitrificans K601 hypothetical protein YP_004390637.1 64521 D 596154 CDS YP_004390638.1 330827400 10485902 64783..65610 1 NC_015423.1 PFAM: Protein of unknown function DUF932; KEGG: ajs:Ajs_4210 hypothetical protein; hypothetical protein 65610 10485902 Alide2_4824 Alicycliphilus denitrificans K601 hypothetical protein YP_004390638.1 64783 D 596154 CDS YP_004390639.1 330827401 10485903 65680..65988 1 NC_015423.1 KEGG: ajs:Ajs_4208 hypothetical protein; hypothetical protein 65988 10485903 Alide2_4825 Alicycliphilus denitrificans K601 hypothetical protein YP_004390639.1 65680 D 596154 CDS YP_004390640.1 330827402 10485904 66096..66326 1 NC_015423.1 KEGG: ajs:Ajs_4207 hypothetical protein; hypothetical protein 66326 10485904 Alide2_4826 Alicycliphilus denitrificans K601 hypothetical protein YP_004390640.1 66096 D 596154 CDS YP_004390641.1 330827403 10485905 67366..69405 1 NC_015423.1 KEGG: ajs:Ajs_4206 methyltransferase type 11; manually curated; PFAM: Methyltransferase type 11; type 11 methyltransferase 69405 10485905 Alide2_4827 Alicycliphilus denitrificans K601 type 11 methyltransferase YP_004390641.1 67366 D 596154 CDS YP_004390642.1 330827404 10485906 69459..69926 1 NC_015423.1 KEGG: ajs:Ajs_4205 hypothetical protein; hypothetical protein 69926 10485906 Alide2_4828 Alicycliphilus denitrificans K601 hypothetical protein YP_004390642.1 69459 D 596154 CDS YP_004390643.1 330827405 10485907 69940..70389 1 NC_015423.1 KEGG: ajs:Ajs_4204 hypothetical protein; hypothetical protein 70389 10485907 Alide2_4829 Alicycliphilus denitrificans K601 hypothetical protein YP_004390643.1 69940 D 596154 CDS YP_004390644.1 330827406 10485908 70433..70651 1 NC_015423.1 KEGG: ajs:Ajs_4203 hypothetical protein; hypothetical protein 70651 10485908 Alide2_4830 Alicycliphilus denitrificans K601 hypothetical protein YP_004390644.1 70433 D 596154 CDS YP_004390645.1 330827407 10485909 71211..71705 1 NC_015423.1 KEGG: ajs:Ajs_4202 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758; DNA repair protein RadC 71705 10485909 Alide2_4831 Alicycliphilus denitrificans K601 DNA repair protein RadC YP_004390645.1 71211 D 596154 CDS YP_004390646.1 330827408 10485910 71878..72207 1 NC_015423.1 KEGG: ajs:Ajs_4201 hypothetical protein; hypothetical protein 72207 10485910 Alide2_4832 Alicycliphilus denitrificans K601 hypothetical protein YP_004390646.1 71878 D 596154 CDS YP_004390647.1 330827409 10485911 72222..72548 1 NC_015423.1 KEGG: ajs:Ajs_4200 hypothetical protein; hypothetical protein 72548 10485911 Alide2_4833 Alicycliphilus denitrificans K601 hypothetical protein YP_004390647.1 72222 D 596154 CDS YP_004390648.1 330827410 10485912 72561..72797 1 NC_015423.1 KEGG: ajs:Ajs_4199 hypothetical protein; hypothetical protein 72797 10485912 Alide2_4834 Alicycliphilus denitrificans K601 hypothetical protein YP_004390648.1 72561 D 596154 CDS YP_004390649.1 330827411 10485913 72805..73422 1 NC_015423.1 KEGG: ajs:Ajs_4198 resolvase domain-containing protein; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal; resolvase domain-containing protein 73422 10485913 Alide2_4835 Alicycliphilus denitrificans K601 resolvase domain-containing protein YP_004390649.1 72805 D 596154 CDS YP_004390650.1 330827412 10485914 complement(74058..74279) 1 NC_015423.1 KEGG: ajs:Ajs_4197 hypothetical protein; hypothetical protein 74279 10485914 Alide2_4836 Alicycliphilus denitrificans K601 hypothetical protein YP_004390650.1 74058 R 596154 CDS YP_004390651.1 330827413 10485915 complement(74285..74875) 1 NC_015423.1 hypothetical protein 74875 10485915 Alide2_4837 Alicycliphilus denitrificans K601 hypothetical protein YP_004390651.1 74285 R 596154 CDS YP_004390652.1 330827414 10485916 complement(74872..75192) 1 NC_015423.1 KEGG: ajs:Ajs_4196 hypothetical protein; hypothetical protein 75192 10485916 Alide2_4838 Alicycliphilus denitrificans K601 hypothetical protein YP_004390652.1 74872 R 596154 CDS