-- dump date 20140618_193726 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 596153000001 SEQ_END SEQ_END NC_014908.1 119718 119718 DR NC_014908.1; contig end 119718..119718 Alicycliphilus denitrificans BC 596153000002 SEQ_END SEQ_END NC_014910.1 4637013 4637013 DR NC_014910.1; contig end 4637013..4637013 Alicycliphilus denitrificans BC 596153000003 SEQ_END SEQ_END NC_014911.1 78982 78982 DR NC_014911.1; contig end 78982..78982 Alicycliphilus denitrificans BC YP_004123964.1 CDS Alide_4515 NC_014908.1 187 1257 R KEGG: pol:Bpro_5514 hypothetical protein; hypothetical protein complement(187..1257) Alicycliphilus denitrificans BC 10101389 YP_004123965.1 CDS Alide_4516 NC_014908.1 1265 1969 R KEGG: pol:Bpro_5515 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(1265..1969) Alicycliphilus denitrificans BC 10101259 YP_004123966.1 CDS Alide_4517 NC_014908.1 3068 3346 D KEGG: vei:Veis_3760 hypothetical protein; hypothetical protein 3068..3346 Alicycliphilus denitrificans BC 10101260 YP_004123967.1 CDS Alide_4518 NC_014908.1 3348 3851 D manually curated; KEGG: gga:423125 similar to scavenger receptor cysteine-rich type 1 protein CD163c-alpha; hypothetical protein 3348..3851 Alicycliphilus denitrificans BC 10101261 YP_004123968.1 CDS Alide_4520 NC_014908.1 4303 4593 D KEGG: dia:Dtpsy_1065 histone family protein nucleoid-structuring protein H-NS; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 4303..4593 Alicycliphilus denitrificans BC 10101263 YP_004123969.1 CDS Alide_4521 NC_014908.1 4606 4926 D KEGG: vap:Vapar_1795 histone family protein nucleoid-structuring protein H-NS; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 4606..4926 Alicycliphilus denitrificans BC 10101264 YP_004123970.1 CDS Alide_4522 NC_014908.1 5025 5441 D KEGG: cph:Cpha266_0558 Mg chelatase, subunit ChlI; hypothetical protein 5025..5441 Alicycliphilus denitrificans BC 10101265 YP_004123971.1 CDS Alide_4523 NC_014908.1 5438 7261 D KEGG: see:SNSL254_p_0066 type IV conjugative transfer system protein TraD; type IV conjugative transfer system protein TraD 5438..7261 Alicycliphilus denitrificans BC 10101266 YP_004123972.1 CDS Alide_4524 NC_014908.1 7271 7879 D KEGG: pmr:PMI2473 plasmid-related protein; hypothetical protein 7271..7879 Alicycliphilus denitrificans BC 10101267 YP_004123973.1 CDS Alide_4525 NC_014908.1 7843 8619 D KEGG: afo:Afer_1731 diguanylate phosphodiesterase; PFAM: EAL domain protein; SMART: EAL domain protein; EAL domain protein 7843..8619 Alicycliphilus denitrificans BC 10101268 YP_004123974.1 CDS Alide_4526 NC_014908.1 8616 9077 R KEGG: cqu:CpipJ_CPIJ000220 conserved oligomeric Golgi complex component 6; hypothetical protein complement(8616..9077) Alicycliphilus denitrificans BC 10101269 YP_004123975.1 CDS Alide_4527 NC_014908.1 9315 9821 D PFAM: Lytic transglycosylase catalytic; KEGG: mpt:Mpe_B0379 invasion protein; Lytic transglycosylase catalytic 9315..9821 Alicycliphilus denitrificans BC 10101270 YP_004123976.1 CDS Alide_4528 NC_014908.1 11454 13577 D KEGG: see:SNSL254_p_0093 hypothetical protein; hypothetical protein 11454..13577 Alicycliphilus denitrificans BC 10101271 YP_004123977.1 CDS Alide_4529 NC_014908.1 13962 14285 D KEGG: transcription initiation factor E subunit alpha; hypothetical protein 13962..14285 Alicycliphilus denitrificans BC 10101272 YP_004123978.1 CDS Alide_4530 NC_014908.1 14282 14560 D TIGRFAM: type IV conjugative transfer system protein TraL; KEGG: bvi:Bcep1808_6760 pilus assembly protein; type IV conjugative transfer system protein TraL 14282..14560 Alicycliphilus denitrificans BC 10101273 YP_004123979.1 CDS Alide_4531 NC_014908.1 14557 15333 D KEGG: mpt:Mpe_B0365 sex pilus assembly protein; hypothetical protein 14557..15333 Alicycliphilus denitrificans BC 10101274 YP_004123980.1 CDS Alide_4532 NC_014908.1 15342 16475 D KEGG: mpt:Mpe_B0366 sex pilus assembly protein; hypothetical protein 15342..16475 Alicycliphilus denitrificans BC 10101275 YP_004123981.1 CDS Alide_4533 NC_014908.1 16472 17902 D KEGG: bvi:Bcep1808_6757 TraB pilus assembly family protein; TraB pilus assembly family protein 16472..17902 Alicycliphilus denitrificans BC 10101276 YP_004123982.1 CDS Alide_4534 NC_014908.1 17902 18417 D KEGG: mpt:Mpe_B0369 sex pilus assembly protein; TIGRFAM: type IV conjugative transfer system protein TraV; PFAM: Type IV conjugative transfer system protein TraV; type IV conjugative transfer system protein TraV 17902..18417 Alicycliphilus denitrificans BC 10101277 YP_004123983.1 CDS Alide_4535 NC_014908.1 18453 18788 D KEGG: bvi:Bcep1808_6755 hypothetical protein; hypothetical protein 18453..18788 Alicycliphilus denitrificans BC 10101278 YP_004123984.1 CDS Alide_4536 NC_014908.1 18799 21243 D TIGRFAM: type-IV secretion system protein TraC; KEGG: mpt:Mpe_B0371 F-pilin subunit assembly into extended F pili; type-IV secretion system protein TraC 18799..21243 Alicycliphilus denitrificans BC 10101279 YP_004123985.1 CDS Alide_4537 NC_014908.1 21251 21745 D KEGG: cli:Clim_1282 outer membrane efflux protein; hypothetical protein 21251..21745 Alicycliphilus denitrificans BC 10101280 YP_004123986.1 CDS Alide_4538 NC_014908.1 21856 22407 D KEGG: bvi:Bcep1808_6752 putative pilus assembly protein,TrhF (pilin signal peptidase); manually curated; PFAM: Peptidase S26, conserved region; Peptidase S26, conserved region protein 21856..22407 Alicycliphilus denitrificans BC 10101281 YP_004123987.1 CDS Alide_4539 NC_014908.1 22565 23554 D PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: afr:AFE_1095 pilus assembly protein TraW, putative; Type-F conjugative transfer system pilin assembly protein TrbC 22565..23554 Alicycliphilus denitrificans BC 10101282 YP_004123988.1 CDS Alide_4540 NC_014908.1 23554 24708 D PFAM: TraU family protein; KEGG: afr:AFE_1096 conjugal transfer protein TraU, putative; TraU family protein 23554..24708 Alicycliphilus denitrificans BC 10101283 YP_004123989.1 CDS Alide_4541 NC_014908.1 24723 28715 D KEGG: pmr:PMI2456 mating pair stabilization protein; hypothetical protein 24723..28715 Alicycliphilus denitrificans BC 10101284 YP_004123990.1 CDS Alide_4542 NC_014908.1 29224 30111 D KEGG: pan:PODANSg9310 hypothetical protein; hypothetical protein 29224..30111 Alicycliphilus denitrificans BC 10101285 YP_004123991.1 CDS Alide_4543 NC_014908.1 30099 31079 D KEGG: bvi:Bcep1808_6751 sex pilus assembly protein; sex pilus assembly protein 30099..31079 Alicycliphilus denitrificans BC 10101286 YP_004123992.1 CDS Alide_4544 NC_014908.1 31082 32590 D PFAM: TraH family protein; KEGG: bvi:Bcep1808_6750 TraH family protein; TraH family protein 31082..32590 Alicycliphilus denitrificans BC 10101287 YP_004123993.1 CDS Alide_4545 NC_014908.1 32599 38373 D KEGG: cbr:CBG02561 Hypothetical protein CBG02561; hypothetical protein 32599..38373 Alicycliphilus denitrificans BC 10101288 YP_004123994.1 CDS Alide_4546 NC_014908.1 38484 39299 D KEGG: dvl:Dvul_0954 Sel1 domain-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain protein repeat-containing protein 38484..39299 Alicycliphilus denitrificans BC 10101289 YP_004123995.1 CDS Alide_4547 NC_014908.1 39372 40256 D KEGG: gfo:GFO_2422 hypothetical protein; hypothetical protein 39372..40256 Alicycliphilus denitrificans BC 10101290 YP_004123996.1 CDS Alide_4548 NC_014908.1 40306 41127 R KEGG: mpt:Mpe_A2996 putative transposase; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB domain protein ATP-binding protein complement(40306..41127) Alicycliphilus denitrificans BC 10101291 YP_004123997.1 CDS Alide_4549 NC_014908.1 41124 42635 R PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_6160 integrase catalytic subunit; Integrase catalytic region protein complement(41124..42635) Alicycliphilus denitrificans BC 10101292 YP_004123998.1 CDS Alide_4551 NC_014908.1 43639 45165 D PFAM: Integrase catalytic region; regulatory protein MerR; KEGG: ctt:CtCNB1_2459 IstA; Integrase catalytic region protein 43639..45165 Alicycliphilus denitrificans BC 10101294 YP_004123999.1 CDS Alide_4552 NC_014908.1 45155 45958 D KEGG: ctt:CtCNB1_3734 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB domain protein ATP-binding protein 45155..45958 Alicycliphilus denitrificans BC 10101295 YP_004124000.1 CDS Alide_4553 NC_014908.1 46273 47208 D KEGG: pag:PLES_25131 hypothetical protein; hypothetical protein 46273..47208 Alicycliphilus denitrificans BC 10101296 YP_004124001.1 CDS Alide_4554 NC_014908.1 47275 47523 D KEGG: rme:Rmet_6231 hypothetical protein; hypothetical protein 47275..47523 Alicycliphilus denitrificans BC 10101297 YP_004124002.1 CDS Alide_4555 NC_014908.1 47525 47635 D hypothetical protein 47525..47635 Alicycliphilus denitrificans BC 10101298 YP_004124003.1 CDS Alide_4556 NC_014908.1 47767 48147 D KEGG: rfr:Rfer_4359 hypothetical protein; hypothetical protein 47767..48147 Alicycliphilus denitrificans BC 10101299 YP_004124004.1 CDS Alide_4557 NC_014908.1 48419 49102 D KEGG: scb:SCAB_16871 putative oxidoreductase; hypothetical protein 48419..49102 Alicycliphilus denitrificans BC 10101300 YP_004124005.1 CDS Alide_4558 NC_014908.1 49184 50155 D KEGG: rfr:Rfer_4370 hypothetical protein; hypothetical protein 49184..50155 Alicycliphilus denitrificans BC 10101301 YP_004124006.1 CDS Alide_4559 NC_014908.1 50331 51050 D KEGG: cbr:CBG23756 C. briggsae CBR-SIR-2.1 protein; hypothetical protein 50331..51050 Alicycliphilus denitrificans BC 10101302 YP_004124007.1 CDS Alide_4560 NC_014908.1 51131 51385 D KEGG: mpt:Mpe_B0157 hypothetical protein; hypothetical protein 51131..51385 Alicycliphilus denitrificans BC 10101303 YP_004124008.1 CDS Alide_4561 NC_014908.1 51382 51564 D hypothetical protein 51382..51564 Alicycliphilus denitrificans BC 10101304 YP_004124009.1 CDS Alide_4562 NC_014908.1 51781 52095 D KEGG: tkm:TK90_2628 hypothetical protein; hypothetical protein 51781..52095 Alicycliphilus denitrificans BC 10101305 YP_004124010.1 CDS Alide_4563 NC_014908.1 52105 52425 D KEGG: aba:Acid345_4350 2-oxoglutarate dehydrogenase E2 component; hypothetical protein 52105..52425 Alicycliphilus denitrificans BC 10101306 YP_004124011.1 CDS Alide_4564 NC_014908.1 52504 52965 D KEGG: ele:Elen_0894 hypothetical protein; hypothetical protein 52504..52965 Alicycliphilus denitrificans BC 10101307 YP_004124012.1 CDS Alide_4565 NC_014908.1 53214 53597 D KEGG: svi:Svir_02820 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; hypothetical protein 53214..53597 Alicycliphilus denitrificans BC 10101308 YP_004124013.1 CDS Alide_4566 NC_014908.1 53594 53842 D KEGG: pna:Pnap_4210 hypothetical protein; hypothetical protein 53594..53842 Alicycliphilus denitrificans BC 10101309 YP_004124014.1 CDS Alide_4567 NC_014908.1 53915 54676 D KEGG: rfr:Rfer_4370 hypothetical protein; hypothetical protein 53915..54676 Alicycliphilus denitrificans BC 10101310 YP_004124015.1 CDS Alide_4568 NC_014908.1 54843 55154 D manually curated; KEGG: tin:Tint_1860 hypothetical protein; hypothetical protein 54843..55154 Alicycliphilus denitrificans BC 10101311 YP_004124016.1 CDS Alide_4569 NC_014908.1 55151 55882 D KEGG: tin:Tint_1861 hypothetical protein; hypothetical protein 55151..55882 Alicycliphilus denitrificans BC 10101312 YP_004124017.1 CDS Alide_4570 NC_014908.1 55886 56215 D manually curated; KEGG: rpf:Rpic12D_2831 hypothetical protein; hypothetical protein 55886..56215 Alicycliphilus denitrificans BC 10101313 YP_004124018.1 CDS Alide_4571 NC_014908.1 56208 56780 D manually curated; KEGG: reh:H16_B0351 hypothetical protein; hypothetical protein 56208..56780 Alicycliphilus denitrificans BC 10101314 YP_004124019.1 CDS Alide_4572 NC_014908.1 56800 57459 D PFAM: integrase family protein; KEGG: bmj:BMULJ_05815 tyrosine recombinase; integrase family protein 56800..57459 Alicycliphilus denitrificans BC 10101315 YP_004124020.1 CDS Alide_4573 NC_014908.1 57459 57671 D KEGG: mth:MTH700 hypothetical protein; hypothetical protein 57459..57671 Alicycliphilus denitrificans BC 10101316 YP_004124021.1 CDS Alide_4574 NC_014908.1 57762 57953 D KEGG: mgr:MGG_03826 hypothetical protein; hypothetical protein 57762..57953 Alicycliphilus denitrificans BC 10101317 YP_004124022.1 CDS Alide_4575 NC_014908.1 58591 58983 D KEGG: bid:Bind_3528 AraC family transcriptional regulator; hypothetical protein 58591..58983 Alicycliphilus denitrificans BC 10101318 YP_004124023.1 CDS Alide_4576 NC_014908.1 58998 59384 D KEGG: rpf:Rpic12D_4799 hypothetical protein; hypothetical protein 58998..59384 Alicycliphilus denitrificans BC 10101319 YP_004124024.1 CDS Alide_4577 NC_014908.1 59673 59894 D KEGG: tmt:Tmath_0092 PKD domain containing protein; hypothetical protein 59673..59894 Alicycliphilus denitrificans BC 10101320 YP_004124025.1 CDS Alide_4578 NC_014908.1 59911 60132 D KEGG: rpf:Rpic12D_4785 hypothetical protein; hypothetical protein 59911..60132 Alicycliphilus denitrificans BC 10101321 YP_004124026.1 CDS Alide_4579 NC_014908.1 60423 61022 D KEGG: pna:Pnap_4409 hypothetical protein; hypothetical protein 60423..61022 Alicycliphilus denitrificans BC 10101322 YP_004124027.1 CDS Alide_4580 NC_014908.1 61034 61258 D KEGG: rpf:Rpic12D_4779 hypothetical protein; hypothetical protein 61034..61258 Alicycliphilus denitrificans BC 10101323 YP_004124028.1 CDS Alide_4581 NC_014908.1 61314 61682 D KEGG: rha:RHA1_ro03242 transcriptional regulator; hypothetical protein 61314..61682 Alicycliphilus denitrificans BC 10101324 YP_004124029.1 CDS Alide_4582 NC_014908.1 61700 61897 D hypothetical protein 61700..61897 Alicycliphilus denitrificans BC 10101325 YP_004124030.1 CDS Alide_4583 NC_014908.1 62188 62394 D KEGG: bxe:Bxe_A3093 hypothetical protein; hypothetical protein 62188..62394 Alicycliphilus denitrificans BC 10101326 YP_004124031.1 CDS Alide_4584 NC_014908.1 62409 62705 D KEGG: rer:RER_07640 ceramidase; hypothetical protein 62409..62705 Alicycliphilus denitrificans BC 10101327 YP_004124032.1 CDS Alide_4585 NC_014908.1 63071 63235 D KEGG: mvu:Metvu_1533 RNA polymerase RPB1 domain 5; hypothetical protein 63071..63235 Alicycliphilus denitrificans BC 10101328 YP_004124033.1 CDS Alide_4586 NC_014908.1 63248 63625 D KEGG: cel:F49A5.6 THaumatiN family; hypothetical protein 63248..63625 Alicycliphilus denitrificans BC 10101329 YP_004124034.1 CDS Alide_4587 NC_014908.1 63637 63891 D KEGG: pjd:Pjdr2_4457 Ham1 family protein; hypothetical protein 63637..63891 Alicycliphilus denitrificans BC 10101330 YP_004124035.1 CDS Alide_4588 NC_014908.1 64281 64520 D KEGG: hch:HCH_04829 hypothetical protein; hypothetical protein 64281..64520 Alicycliphilus denitrificans BC 10101331 YP_004124036.1 CDS Alide_4589 NC_014908.1 64600 64806 D KEGG: bxe:Bxe_A3093 hypothetical protein; hypothetical protein 64600..64806 Alicycliphilus denitrificans BC 10101332 YP_004124037.1 CDS Alide_4590 NC_014908.1 64822 65058 D KEGG: bge:BC1002_4953 hypothetical protein; hypothetical protein 64822..65058 Alicycliphilus denitrificans BC 10101333 YP_004124038.1 CDS Alide_4591 NC_014908.1 65154 65318 D KEGG: mvu:Metvu_1533 RNA polymerase RPB1 domain 5; hypothetical protein 65154..65318 Alicycliphilus denitrificans BC 10101334 YP_004124039.1 CDS Alide_4592 NC_014908.1 66153 67667 R KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66 complement(66153..67667) Alicycliphilus denitrificans BC 10101335 YP_004124040.1 CDS Alide_4593 NC_014908.1 67750 68082 R PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein complement(67750..68082) Alicycliphilus denitrificans BC 10101336 YP_004124041.1 CDS Alide_4594 NC_014908.1 68079 68507 R PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein complement(68079..68507) Alicycliphilus denitrificans BC 10101337 YP_004124042.1 CDS Alide_4595 NC_014908.1 68567 69163 D KEGG: ajs:Ajs_4213 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase like enzyme 68567..69163 Alicycliphilus denitrificans BC 10101338 YP_004124043.1 CDS Alide_4596 NC_014908.1 69216 69581 D KEGG: lbz:LbrM34_V2.1910 hypothetical protein; hypothetical protein 69216..69581 Alicycliphilus denitrificans BC 10101339 YP_004124044.1 CDS Alide_4597 NC_014908.1 69620 70567 D PFAM: peptidase S49; KEGG: eba:p1B184 periplasmic serine protease (ClpP class); peptidase S49 69620..70567 Alicycliphilus denitrificans BC 10101340 YP_004124045.1 CDS Alide_4598 NC_014908.1 70582 70860 D KEGG: aeh:Mlg_1551 hypothetical protein; hypothetical protein 70582..70860 Alicycliphilus denitrificans BC 10101341 YP_004124046.1 CDS Alide_4599 NC_014908.1 70956 71171 R KEGG: glo:Glov_1032 xanthine/uracil/vitamin C permease; hypothetical protein complement(70956..71171) Alicycliphilus denitrificans BC 10101342 YP_004124047.1 CDS Alide_4600 NC_014908.1 71289 71621 R KEGG: clu:CLUG_01384 hypothetical protein; hypothetical protein complement(71289..71621) Alicycliphilus denitrificans BC 10101343 YP_004124048.1 CDS Alide_4601 NC_014908.1 71767 72948 R PFAM: transposase Tn3 family protein; KEGG: aau:AAur_pTC10224 IS1071, transposase; transposase Tn3 family protein complement(71767..72948) Alicycliphilus denitrificans BC 10101344 YP_004124049.1 CDS Alide_4602 NC_014908.1 72984 76013 R PFAM: transposase Tn3 family protein; KEGG: rpf:Rpic12D_4478 transposase Tn3 family protein; transposase Tn3 family protein complement(72984..76013) Alicycliphilus denitrificans BC 10101345 YP_004124050.1 CDS Alide_4604 NC_014908.1 76841 77119 D KEGG: rme:Rmet_6342 antitoxin of a toxin/antitoxin system; antitoxin of a toxin/antitoxin system 76841..77119 Alicycliphilus denitrificans BC 10101347 YP_004124051.1 CDS Alide_4605 NC_014908.1 77116 77400 D KEGG: tin:Tint_3241 addiction module toxin, RelE/StbE family; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module toxin, RelE/StbE family 77116..77400 Alicycliphilus denitrificans BC 10101348 YP_004124052.1 CDS Alide_4606 NC_014908.1 77807 78367 D manually curated; KEGG: rme:Rmet_6340 hypothetical protein; hypothetical protein 77807..78367 Alicycliphilus denitrificans BC 10101349 YP_004124053.1 CDS Alide_4607 NC_014908.1 78375 78857 D KEGG: rme:Rmet_6339 cupin 2 conserved barrel domain-containing protein; manually curated; PFAM: Cupin 2 conserved barrel domain protein; Cupin 2 conserved barrel domain protein 78375..78857 Alicycliphilus denitrificans BC 10101350 YP_004124054.1 CDS Alide_4608 NC_014908.1 79354 80313 D KEGG: bgl:bglu_2p1110 hypothetical protein; hypothetical protein 79354..80313 Alicycliphilus denitrificans BC 10101351 YP_004124055.1 CDS Alide_4609 NC_014908.1 80638 81177 R KEGG: rfr:Rfer_3089 molybdopterin-guanine dinucleotide biosynthesis protein B; manually curated; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B complement(80638..81177) Alicycliphilus denitrificans BC 10101352 YP_004124056.1 CDS Alide_4610 NC_014908.1 81247 81564 R PFAM: cytochrome c class I; KEGG: rme:Rmet_3424 cytochrome c, class I; cytochrome c class I complement(81247..81564) Alicycliphilus denitrificans BC 10101353 YP_004124057.1 CDS Alide_4611 NC_014908.1 81691 82410 R TIGRFAM: DMSO reductase family type II enzyme, heme b subunit; KEGG: hla:Hlac_1337 DMSO reductase family type II enzyme, heme B subunit; PFAM: Cytochrome c-552/DMSO reductase-like, haem-binding domain; DMSO reductase family type II enzyme, heme b subunit complement(81691..82410) Alicycliphilus denitrificans BC 10101354 YP_004124058.1 CDS Alide_4612 NC_014908.1 82407 82988 R KEGG: dol:Dole_0197 delta-subunit of ethylbenzene dehydrogenase; TIGRFAM: DMSO reductase family type II enzyme chaperone; PFAM: TorD-like chaperone; DMSO reductase family type II enzyme chaperone complement(82407..82988) Alicycliphilus denitrificans BC 10101355 YP_004124059.1 CDS Alide_4613 NC_014908.1 82985 83971 R TIGRFAM: DMSO reductase family type II enzyme, iron-sulfur subunit; KEGG: pmx:PERMA_0658 respiratory nitrate reductase 1 beta chain (nitrate reductase A subunit beta) (quinol-nitrate oxidoreductase subunitbeta); DMSO reductase family type II enzyme, iron-sulfur subunit complement(82985..83971) Alicycliphilus denitrificans BC 10101356 YP_004124060.1 CDS Alide_4614 NC_014908.1 83982 86726 R KEGG: pmx:PERMA_0657 dimethylsulfide dehydrogenase subunit alpha (dimethylsulfide dehydrogenase molybdenum subunit) (DMS DH alphasubunit) (DMS DH molybdenum subunit); TIGRFAM: DMSO reductase family type II enzyme, molybdopterin subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; DMSO reductase family type II enzyme, molybdopterin subunit complement(83982..86726) Alicycliphilus denitrificans BC 10101357 YP_004124061.1 CDS Alide_4615 NC_014908.1 87047 87904 D KEGG: dar:Daro_2580 chlorite dismutase; manually curated; PFAM: Chlorite dismutase; Chlorite dismutase 87047..87904 Alicycliphilus denitrificans BC 10101358 YP_004124062.1 CDS Alide_4616 NC_014908.1 88041 88328 D TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: pol:Bpro_2731 hypothetical protein; pentapeptide MXKDX repeat protein 88041..88328 Alicycliphilus denitrificans BC 10101359 YP_004124063.1 CDS Alide_4618 NC_014908.1 88673 89044 D KEGG: kpn:KPN_pKPN5p08243 hypothetical protein; manually curated; PFAM: Cupin 2 conserved barrel domain protein; Cupin 2 conserved barrel domain protein 88673..89044 Alicycliphilus denitrificans BC 10101361 YP_004124064.1 CDS Alide_4619 NC_014908.1 89415 90386 D PFAM: integrase family protein; KEGG: eba:p2A217 putative integrase; integrase family protein 89415..90386 Alicycliphilus denitrificans BC 10101362 YP_004124065.1 CDS Alide_4620 NC_014908.1 90406 91161 R KEGG: bge:BC1002_7025 IstB domain protein ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; IstB ATP binding domain protein; SMART: AAA ATPase; IstB domain protein ATP-binding protein complement(90406..91161) Alicycliphilus denitrificans BC 10101363 YP_004124066.1 CDS Alide_4621 NC_014908.1 91181 92719 R PFAM: Integrase catalytic region; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_A3740 putative transposase; Integrase catalytic region protein complement(91181..92719) Alicycliphilus denitrificans BC 10101364 YP_004124067.1 CDS Alide_4622 NC_014908.1 93023 93919 R PFAM: transposase Tn3 family protein; KEGG: aau:AAur_pTC10224 IS1071, transposase; transposase Tn3 family protein complement(93023..93919) Alicycliphilus denitrificans BC 10101365 YP_004124068.1 CDS Alide_4623 NC_014908.1 94890 96803 R PFAM: integrase family protein; KEGG: rpf:Rpic12D_5076 integrase family protein; integrase family protein complement(94890..96803) Alicycliphilus denitrificans BC 10101366 YP_004124069.1 CDS Alide_4624 NC_014908.1 97121 97504 R KEGG: pna:Pnap_4414 hypothetical protein; hypothetical protein complement(97121..97504) Alicycliphilus denitrificans BC 10101367 YP_004124070.1 CDS Alide_4625 NC_014908.1 97530 100289 R KEGG: maq:Maqu_4078 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase; type III restriction protein res subunit complement(97530..100289) Alicycliphilus denitrificans BC 10101368 YP_004124071.1 CDS Alide_4626 NC_014908.1 100286 102214 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: maq:Maqu_4077 DNA methylase N-4/N-6 domain-containing protein; DNA methylase N-4/N-6 domain protein complement(100286..102214) Alicycliphilus denitrificans BC 10101369 YP_004124072.1 CDS Alide_4627 NC_014908.1 102214 102537 R PFAM: PemK family protein; KEGG: xcv:XCVc0002 putative PemK-like protein; PemK family protein complement(102214..102537) Alicycliphilus denitrificans BC 10101370 YP_004124073.1 CDS Alide_4628 NC_014908.1 102534 102755 R KEGG: xcv:XCVc0003 hypothetical protein; hypothetical protein complement(102534..102755) Alicycliphilus denitrificans BC 10101371 YP_004124074.1 CDS Alide_4629 NC_014908.1 102831 103667 D PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: eba:ebA67 hypothetical protein; restriction endonuclease 102831..103667 Alicycliphilus denitrificans BC 10101372 YP_004124075.1 CDS Alide_4630 NC_014908.1 103685 104056 R KEGG: ajs:Ajs_1589 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(103685..104056) Alicycliphilus denitrificans BC 10101373 YP_004124076.1 CDS Alide_4631 NC_014908.1 104214 104666 D KEGG: vap:Vapar_5860 transcriptional regulator, XRE family; transcriptional regulator, XRE family 104214..104666 Alicycliphilus denitrificans BC 10101374 YP_004124077.1 CDS Alide_4632 NC_014908.1 104677 105234 R KEGG: reu:Reut_A2370 hypothetical protein; hypothetical protein complement(104677..105234) Alicycliphilus denitrificans BC 10101375 YP_004124078.1 CDS Alide_4633 NC_014908.1 105502 107247 D PFAM: transposase Tn3 family protein; KEGG: aau:AAur_pTC10224 IS1071, transposase; transposase Tn3 family protein 105502..107247 Alicycliphilus denitrificans BC 10101376 YP_004124079.1 CDS Alide_4634 NC_014908.1 107675 108031 R KEGG: rme:Rmet_6339 cupin 2 conserved barrel domain-containing protein; manually curated; PFAM: Cupin 2 conserved barrel domain protein; Cupin 2 conserved barrel domain protein complement(107675..108031) Alicycliphilus denitrificans BC 10101377 YP_004124080.1 CDS Alide_4635 NC_014908.1 108154 108726 R KEGG: rme:Rmet_6340 hypothetical protein; hypothetical protein complement(108154..108726) Alicycliphilus denitrificans BC 10101378 YP_004124081.1 CDS Alide_4636 NC_014908.1 109133 109417 R KEGG: tin:Tint_3241 addiction module toxin, RelE/StbE family; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module toxin, RelE/StbE family complement(109133..109417) Alicycliphilus denitrificans BC 10101379 YP_004124082.1 CDS Alide_4637 NC_014908.1 109414 109692 R KEGG: rme:Rmet_6342 antitoxin of a toxin/antitoxin system; antitoxin of a toxin/antitoxin system complement(109414..109692) Alicycliphilus denitrificans BC 10101380 YP_004124083.1 CDS Alide_4638 NC_014908.1 109946 110524 D PFAM: Resolvase domain; KEGG: rpf:Rpic12D_4479 resolvase domain protein; Resolvase domain protein 109946..110524 Alicycliphilus denitrificans BC 10101381 YP_004124084.1 CDS Alide_4641 NC_014908.1 114221 114895 R PFAM: transposase Tn3 family protein; KEGG: aau:AAur_pTC10224 IS1071, transposase; transposase Tn3 family protein complement(114221..114895) Alicycliphilus denitrificans BC 10101384 YP_004124085.1 CDS Alide_4642 NC_014908.1 115162 115413 R manually curated; KEGG: alv:Alvin_3256 Wgr; Wgr family protein complement(115162..115413) Alicycliphilus denitrificans BC 10101385 YP_004124086.1 CDS Alide_4643 NC_014908.1 116308 116775 D KEGG: xca:xccb100_0185 cysteine desulfurase; hypothetical protein 116308..116775 Alicycliphilus denitrificans BC 10101386 YP_004124087.1 CDS Alide_4644 NC_014908.1 117039 117539 D KEGG: oan:Oant_2921 AraC family transcriptional regulator; hypothetical protein 117039..117539 Alicycliphilus denitrificans BC 10101387 YP_004124088.1 CDS Alide_4645 NC_014908.1 117756 118919 R PFAM: initiator RepB protein; KEGG: bmj:BMULJ_05362 replication protein; initiator RepB protein complement(117756..118919) Alicycliphilus denitrificans BC 10101388 YP_004124676.1 CDS Alide_0001 NC_014910.1 206 1627 D TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: dia:Dtpsy_0001 chromosomal replication initiation protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein dnaa 206..1627 Alicycliphilus denitrificans BC 10106510 YP_004124677.1 CDS Alide_0002 NC_014910.1 1754 2860 D SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: dia:Dtpsy_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1754..2860 Alicycliphilus denitrificans BC 10102025 YP_004124678.1 CDS Alide_0003 NC_014910.1 2979 5561 D TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; KEGG: dia:Dtpsy_0003 DNA gyrase, B subunit; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase, b subunit 2979..5561 Alicycliphilus denitrificans BC 10102026 YP_004124679.1 CDS Alide_0004 NC_014910.1 5636 6049 D PFAM: protein of unknown function UPF0153; KEGG: dia:Dtpsy_0006 protein of unknown function UPF0153; hypothetical protein 5636..6049 Alicycliphilus denitrificans BC 10102027 YP_004124680.1 CDS Alide_0005 NC_014910.1 6074 7267 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_A2137 acyl-CoA transferase/carnitine dehydratase; l-carnitine dehydratase/bile acid-inducible protein f complement(6074..7267) Alicycliphilus denitrificans BC 10102028 YP_004124681.1 CDS Alide_0006 NC_014910.1 7277 8134 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_A2138 enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase complement(7277..8134) Alicycliphilus denitrificans BC 10102029 YP_004124682.1 CDS Alide_0007 NC_014910.1 8188 9030 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reh:H16_A2139 LysR family transcriptional regulator; LysR family transcriptional regulator 8188..9030 Alicycliphilus denitrificans BC 10102030 YP_004124683.1 CDS Alide_0008 NC_014910.1 9027 10049 R KEGG: reh:H16_A2140 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein complement(9027..10049) Alicycliphilus denitrificans BC 10102031 YP_004124684.1 CDS Alide_0009 NC_014910.1 10084 11856 R PFAM: protein of unknown function DUF1446; KEGG: reh:H16_A2141 hypothetical protein; hypothetical protein complement(10084..11856) Alicycliphilus denitrificans BC 10102032 YP_004124685.1 CDS Alide_0010 NC_014910.1 11853 13865 R PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: reh:H16_A2142 acetyl-CoA carboxylase alpha chain; carbamoyl-phosphate synthase l chain ATP-binding protein complement(11853..13865) Alicycliphilus denitrificans BC 10102033 YP_004124686.1 CDS Alide_0011 NC_014910.1 13882 15045 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reh:H16_A2143 acyl-CoA dehydrogenase, long-chain specific; acyl-CoA dehydrogenase complement(13882..15045) Alicycliphilus denitrificans BC 10102034 YP_004124687.1 CDS Alide_0012 NC_014910.1 15177 16787 R KEGG: reh:H16_A2144 propionyl-CoA carboxylase beta chain; PFAM: carboxyl transferase; methylcrotonoyl-CoA carboxylase complement(15177..16787) Alicycliphilus denitrificans BC 10102035 YP_004124688.1 CDS Alide_0013 NC_014910.1 16899 17204 R PFAM: acylphosphatase; KEGG: ajs:Ajs_4152 acylphosphatase; acylphosphatase complement(16899..17204) Alicycliphilus denitrificans BC 10102036 YP_004124689.1 CDS Alide_0014 NC_014910.1 17232 17516 D KEGG: ajs:Ajs_4153 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 17232..17516 Alicycliphilus denitrificans BC 10102037 YP_004124690.1 CDS Alide_0015 NC_014910.1 17834 19219 D PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: ajs:Ajs_4155 homoserine dehydrogenase; homoserine dehydrogenase 17834..19219 Alicycliphilus denitrificans BC 10102038 YP_004124691.1 CDS Alide_0016 NC_014910.1 19379 21553 D SMART: helicase c2; DEAD-like helicase; KEGG: ajs:Ajs_4158 ATP-dependent DNA helicase DinG; helicase c2 19379..21553 Alicycliphilus denitrificans BC 10102039 YP_004124692.1 CDS Alide_0017 NC_014910.1 21566 22195 D PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: ajs:Ajs_4160 DNA polymerase III, epsilon subunit; SMART: Exonuclease; DNA-directed DNA polymerase 21566..22195 Alicycliphilus denitrificans BC 10102040 YP_004124693.1 CDS Alide_0018 NC_014910.1 22262 22741 D PFAM: NLP/P60 protein; KEGG: ajs:Ajs_0001 NLP/P60 protein; nlp/p60 protein 22262..22741 Alicycliphilus denitrificans BC 10102041 YP_004124694.1 CDS Alide_0019 NC_014910.1 22780 23883 D TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: ajs:Ajs_0002 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 22780..23883 Alicycliphilus denitrificans BC 10102042 YP_004124695.1 CDS Alide_0020 NC_014910.1 24476 28096 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; KEGG: dia:Dtpsy_0021 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; diguanylate cyclase 24476..28096 Alicycliphilus denitrificans BC 10102043 YP_004124696.1 CDS Alide_0021 NC_014910.1 28163 28966 R KEGG: dia:Dtpsy_0022 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr complement(28163..28966) Alicycliphilus denitrificans BC 10102044 YP_004124697.1 CDS Alide_0022 NC_014910.1 29153 30124 D KEGG: ajs:Ajs_0005 hypothetical protein; hypothetical protein 29153..30124 Alicycliphilus denitrificans BC 10102045 YP_004124698.1 CDS Alide_0023 NC_014910.1 30135 31163 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bpt:Bpet3280 hypothetical protein; acyl-CoA dehydrogenase complement(30135..31163) Alicycliphilus denitrificans BC 10102046 YP_004124699.1 CDS Alide_0024 NC_014910.1 31168 32355 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bpt:Bpet3281 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(31168..32355) Alicycliphilus denitrificans BC 10102047 YP_004124700.1 CDS Alide_0025 NC_014910.1 32402 33367 R KEGG: bpt:Bpet3282 secreted protein; secreted protein complement(32402..33367) Alicycliphilus denitrificans BC 10102048 YP_004124701.1 CDS Alide_0026 NC_014910.1 33405 35498 R PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; CoA-binding domain protein; KEGG: rme:Rmet_0842 CoA-binding; ATPase complement(33405..35498) Alicycliphilus denitrificans BC 10102049 YP_004124702.1 CDS Alide_0027 NC_014910.1 35513 36313 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_0841 enoyl-CoA hydratase; enoyl-CoA hydratase complement(35513..36313) Alicycliphilus denitrificans BC 10102050 YP_004124703.1 CDS Alide_0028 NC_014910.1 36408 37172 D KEGG: bpt:Bpet3285 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 36408..37172 Alicycliphilus denitrificans BC 10102051 YP_004124704.1 CDS Alide_0029 NC_014910.1 37432 38037 R PFAM: Lipid A 3-O-deacylase-related; KEGG: dia:Dtpsy_0024 hypothetical protein; lipid a 3-o-deacylase-like protein complement(37432..38037) Alicycliphilus denitrificans BC 10102052 YP_004124705.1 CDS Alide_0030 NC_014910.1 38152 38745 R KEGG: ajs:Ajs_0007 hypothetical protein; hypothetical protein complement(38152..38745) Alicycliphilus denitrificans BC 10102053 YP_004124706.1 CDS Alide_0031 NC_014910.1 38962 39903 D PFAM: exonuclease RdgC; KEGG: ajs:Ajs_0008 recombination associated protein; exonuclease rdgc 38962..39903 Alicycliphilus denitrificans BC 10102054 YP_004124707.1 CDS Alide_0032 NC_014910.1 39923 41176 D PFAM: nucleoside recognition domain protein; KEGG: ajs:Ajs_0012 nucleoside recognition domain-containing protein; nucleoside recognition domain-containing protein 39923..41176 Alicycliphilus denitrificans BC 10102055 YP_004124708.1 CDS Alide_0033 NC_014910.1 41657 41908 D KEGG: dia:Dtpsy_0031 hypothetical protein; hypothetical protein 41657..41908 Alicycliphilus denitrificans BC 10102056 YP_004124709.1 CDS Alide_0034 NC_014910.1 41877 43754 R KEGG: blt:Balat_0053 beta-galactosidase I; hypothetical protein complement(41877..43754) Alicycliphilus denitrificans BC 10102057 YP_004124710.1 CDS Alide_0035 NC_014910.1 43852 44289 R TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: dia:Dtpsy_0035 transcriptional regulator, MerR family; SMART: regulatory protein MerR; cu(i)-responsive transcriptional regulator complement(43852..44289) Alicycliphilus denitrificans BC 10102058 YP_004124711.1 CDS Alide_0036 NC_014910.1 44286 44483 R PFAM: Heavy metal transport/detoxification protein; KEGG: dia:Dtpsy_0036 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(44286..44483) Alicycliphilus denitrificans BC 10102059 YP_004124712.1 CDS Alide_0037 NC_014910.1 44653 46884 D KEGG: dia:Dtpsy_0037 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase 44653..46884 Alicycliphilus denitrificans BC 10102060 YP_004124713.1 CDS Alide_0038 NC_014910.1 47011 48660 D KEGG: ajs:Ajs_0020 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 47011..48660 Alicycliphilus denitrificans BC 10102061 YP_004124714.1 CDS Alide_0039 NC_014910.1 48816 51911 R KEGG: aav:Aave_0038 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, czca family complement(48816..51911) Alicycliphilus denitrificans BC 10102062 YP_004124715.1 CDS Alide_0040 NC_014910.1 51908 53161 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: aav:Aave_0039 RND family efflux transporter MFP subunit; efflux transporter, rnd family, mfp subunit complement(51908..53161) Alicycliphilus denitrificans BC 10102063 YP_004124716.1 CDS Alide_0041 NC_014910.1 53193 54434 R PFAM: outer membrane efflux protein; KEGG: aav:Aave_0040 outer membrane efflux protein; outer membrane efflux protein complement(53193..54434) Alicycliphilus denitrificans BC 10102064 YP_004124717.1 CDS Alide_0042 NC_014910.1 54567 55292 D KEGG: aav:Aave_0041 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 54567..55292 Alicycliphilus denitrificans BC 10102065 YP_004124718.1 CDS Alide_0043 NC_014910.1 55289 56716 D KEGG: aav:Aave_0042 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 55289..56716 Alicycliphilus denitrificans BC 10102066 YP_004124719.1 CDS Alide_0044 NC_014910.1 56742 57857 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: dia:Dtpsy_0040 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(56742..57857) Alicycliphilus denitrificans BC 10102067 YP_004124720.1 CDS Alide_0045 NC_014910.1 57920 58528 R PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_0042 glutathione S-transferase domain protein; glutathione s-transferase domain-containing protein complement(57920..58528) Alicycliphilus denitrificans BC 10102068 YP_004124721.1 CDS Alide_0046 NC_014910.1 58561 58857 R PFAM: protein of unknown function UPF0153; KEGG: dia:Dtpsy_0043 protein of unknown function UPF0153; hypothetical protein complement(58561..58857) Alicycliphilus denitrificans BC 10102069 YP_004124722.1 CDS Alide_0047 NC_014910.1 58864 59442 R PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_0044 NADPH-dependent FMN reductase; nadph-dependent fmn reductase complement(58864..59442) Alicycliphilus denitrificans BC 10102070 YP_004124723.1 CDS Alide_0048 NC_014910.1 59574 61553 D manually curated; TIGRFAM: glucose inhibited division protein A; KEGG: dia:Dtpsy_0045 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: glucose-inhibited division protein A; glucose inhibited division protein a 59574..61553 Alicycliphilus denitrificans BC 10102071 YP_004124724.1 CDS Alide_0049 NC_014910.1 61537 61776 D KEGG: pct:PC1_0787 hypothetical protein; hypothetical protein 61537..61776 Alicycliphilus denitrificans BC 10102072 YP_004124725.1 CDS Alide_0050 NC_014910.1 61769 62416 D KEGG: dia:Dtpsy_0046 16S rRNA methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; methyltransferase GidB 61769..62416 Alicycliphilus denitrificans BC 10102073 YP_004124726.1 CDS Alide_0051 NC_014910.1 62453 63067 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dia:Dtpsy_0047 lysine exporter protein (LysE/YggA); lysine exporter protein (lyse/ygga) 62453..63067 Alicycliphilus denitrificans BC 10102074 YP_004124727.1 CDS Alide_0052 NC_014910.1 63076 63846 D KEGG: dia:Dtpsy_0048 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 63076..63846 Alicycliphilus denitrificans BC 10102075 YP_004124728.1 CDS Alide_0053 NC_014910.1 63931 64473 D PFAM: protein of unknown function DUF1234; KEGG: ajs:Ajs_0030 hypothetical protein; hypothetical protein 63931..64473 Alicycliphilus denitrificans BC 10102076 YP_004124729.1 CDS Alide_0054 NC_014910.1 64479 65396 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: aav:Aave_0056 chromosome segregation DNA-binding protein; SMART: ParB domain protein nuclease; parb-like partition protein 64479..65396 Alicycliphilus denitrificans BC 10102077 YP_004124730.1 CDS Alide_0055 NC_014910.1 65421 66200 D KEGG: ajs:Ajs_0032 methyltransferase type 12; type 12 methyltransferase 65421..66200 Alicycliphilus denitrificans BC 10102078 YP_004124731.1 CDS Alide_0056 NC_014910.1 66260 67300 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein 66260..67300 Alicycliphilus denitrificans BC 10102079 YP_004124732.1 CDS Alide_0057 NC_014910.1 67380 68285 R SMART: Helix-turn-helix, AraC domain; KEGG: dia:Dtpsy_0054 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(67380..68285) Alicycliphilus denitrificans BC 10102080 YP_004124733.1 CDS Alide_0058 NC_014910.1 68345 69610 D PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_0055 major facilitator superfamily MFS_1; major facilitator superfamily protein 68345..69610 Alicycliphilus denitrificans BC 10102081 YP_004124734.1 CDS Alide_0059 NC_014910.1 69612 70421 R PFAM: MscS Mechanosensitive ion channel; KEGG: bpy:Bphyt_0752 MscS mechanosensitive ion channel; mscs mechanosensitive ion channel complement(69612..70421) Alicycliphilus denitrificans BC 10102082 YP_004124735.1 CDS Alide_0060 NC_014910.1 70500 70595 D hypothetical protein 70500..70595 Alicycliphilus denitrificans BC 10102083 YP_004124736.1 CDS Alide_0061 NC_014910.1 70620 72044 R PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_0040 fis family transcriptional regulator; fad linked oxidase domain-containing protein complement(70620..72044) Alicycliphilus denitrificans BC 10102084 YP_004124737.1 CDS Alide_0062 NC_014910.1 72821 73033 R KEGG: shi:Shel_23880 hypothetical protein; hypothetical protein complement(72821..73033) Alicycliphilus denitrificans BC 10102085 YP_004124738.1 CDS Alide_0063 NC_014910.1 73036 73581 R KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein; phage virion morphogenesis protein complement(73036..73581) Alicycliphilus denitrificans BC 10102086 YP_004124739.1 CDS Alide_0064 NC_014910.1 73688 74890 R PFAM: head morphogenesis protein SPP1 gp7; KEGG: bpt:Bpet4409 F protein (gpF) (protein GP30); head morphogenesis protein spp1 gp7 complement(73688..74890) Alicycliphilus denitrificans BC 10102087 YP_004124740.1 CDS Alide_0065 NC_014910.1 74883 76379 R PFAM: protein of unknown function DUF935; KEGG: rsc:RCFBP_11714 hypothetical protein; hypothetical protein complement(74883..76379) Alicycliphilus denitrificans BC 10102088 YP_004124741.1 CDS Alide_0066 NC_014910.1 76376 77050 R KEGG: rce:RC1_1112 terminase large subunit; hypothetical protein complement(76376..77050) Alicycliphilus denitrificans BC 10102089 YP_004124742.1 CDS Alide_0067 NC_014910.1 77062 77247 R KEGG: bps:BPSL1153 hypothetical protein; hypothetical protein complement(77062..77247) Alicycliphilus denitrificans BC 10102090 YP_004124743.1 CDS Alide_0068 NC_014910.1 77251 77721 R KEGG: cvi:CV_2153 hypothetical protein; hypothetical protein complement(77251..77721) Alicycliphilus denitrificans BC 10102091 YP_004124744.1 CDS Alide_0069 NC_014910.1 77965 78771 D KEGG: aav:Aave_4097 hypothetical protein; hypothetical protein 77965..78771 Alicycliphilus denitrificans BC 10102092 YP_004124745.1 CDS Alide_0070 NC_014910.1 78805 79977 D KEGG: pna:Pnap_2245 hypothetical protein; hypothetical protein 78805..79977 Alicycliphilus denitrificans BC 10102093 YP_004124746.1 CDS Alide_0071 NC_014910.1 79986 80393 D KEGG: scl:sce2651 carbohydrate ABC transporter; hypothetical protein 79986..80393 Alicycliphilus denitrificans BC 10102094 YP_004124747.1 CDS Alide_0072 NC_014910.1 80393 80824 D KEGG: aav:Aave_4094 hypothetical protein; hypothetical protein 80393..80824 Alicycliphilus denitrificans BC 10102095 YP_004124748.1 CDS Alide_0073 NC_014910.1 80835 82826 D KEGG: aav:Aave_4093 hypothetical protein; hypothetical protein 80835..82826 Alicycliphilus denitrificans BC 10102096 YP_004124749.1 CDS Alide_0074 NC_014910.1 82819 83040 D KEGG: pna:Pnap_2241 hypothetical protein; hypothetical protein 82819..83040 Alicycliphilus denitrificans BC 10102097 YP_004124750.1 CDS Alide_0075 NC_014910.1 83191 83982 D PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: aav:Aave_4108 D12 class N6 adenine-specific DNA methyltransferase; d12 class n6 adenine-specific DNA methyltransferase 83191..83982 Alicycliphilus denitrificans BC 10102098 YP_004124751.1 CDS Alide_0077 NC_014910.1 84303 84878 D TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: dia:Dtpsy_0063 ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP/cobalamin adenosyltransferase 84303..84878 Alicycliphilus denitrificans BC 10102100 YP_004124752.1 CDS Alide_0078 NC_014910.1 84939 85361 R PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0044 hypothetical protein; thioesterase superfamily protein complement(84939..85361) Alicycliphilus denitrificans BC 10102101 YP_004124753.1 CDS Alide_0079 NC_014910.1 85444 86910 R TIGRFAM: succinate CoA transferase; KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase complement(85444..86910) Alicycliphilus denitrificans BC 10102102 YP_004124754.1 CDS Alide_0080 NC_014910.1 87122 87856 D KEGG: dia:Dtpsy_0067 hypothetical protein; hypothetical protein 87122..87856 Alicycliphilus denitrificans BC 10102103 YP_004124755.1 CDS Alide_0081 NC_014910.1 87911 88816 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_5369 LysR family transcriptional regulator; LysR family transcriptional regulator 87911..88816 Alicycliphilus denitrificans BC 10102104 YP_004124756.1 CDS Alide_0082 NC_014910.1 88941 89951 D KEGG: reu:Reut_B4598 hypothetical protein; hypothetical protein 88941..89951 Alicycliphilus denitrificans BC 10102105 YP_004124757.1 CDS Alide_0083 NC_014910.1 90000 90806 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB2766 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 90000..90806 Alicycliphilus denitrificans BC 10102106 YP_004124758.1 CDS Alide_0084 NC_014910.1 90808 91569 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_0736 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 90808..91569 Alicycliphilus denitrificans BC 10102107 YP_004124759.1 CDS Alide_0085 NC_014910.1 91601 92116 D PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_2144 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 91601..92116 Alicycliphilus denitrificans BC 10102108 YP_004124760.1 CDS Alide_0086 NC_014910.1 92123 93409 R KEGG: ajs:Ajs_0048 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease complement(92123..93409) Alicycliphilus denitrificans BC 10102109 YP_004124761.1 CDS Alide_0087 NC_014910.1 93561 94271 D TIGRFAM: methyltransferase FkbM family; KEGG: sna:Snas_6312 methyltransferase FkbM family; methyltransferase fkbm family 93561..94271 Alicycliphilus denitrificans BC 10102110 YP_004124762.1 CDS Alide_0088 NC_014910.1 94398 95666 R KEGG: ajs:Ajs_0052 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; ubiquinone biosynthesis hydroxylase, ubih/ubif/visc/coq6 family complement(94398..95666) Alicycliphilus denitrificans BC 10102111 YP_004124763.1 CDS Alide_0089 NC_014910.1 95836 97911 D KEGG: dia:Dtpsy_0074 acetoacetyl-CoA synthetase; TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; acetoacetyl-CoA synthase 95836..97911 Alicycliphilus denitrificans BC 10102112 YP_004124764.1 CDS Alide_0090 NC_014910.1 97943 98872 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0055 LysR family transcriptional regulator; LysR family transcriptional regulator complement(97943..98872) Alicycliphilus denitrificans BC 10102113 YP_004124765.1 CDS Alide_0091 NC_014910.1 98988 99974 D KEGG: ajs:Ajs_0056 hypothetical protein; hypothetical protein 98988..99974 Alicycliphilus denitrificans BC 10102114 YP_004124766.1 CDS Alide_0092 NC_014910.1 100000 101157 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 100000..101157 Alicycliphilus denitrificans BC 10102115 YP_004124767.1 CDS Alide_0093 NC_014910.1 101177 102202 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0062 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 101177..102202 Alicycliphilus denitrificans BC 10102116 YP_004124768.1 CDS Alide_0094 NC_014910.1 102308 103096 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0063 enoyl-CoA hydratase; enoyl-CoA hydratase 102308..103096 Alicycliphilus denitrificans BC 10102117 YP_004124769.1 CDS Alide_0095 NC_014910.1 103126 103749 D manually curated; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; KEGG: dia:Dtpsy_0083 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; cdp-diacylglycerol/serine o-phosphatidyltransferase 103126..103749 Alicycliphilus denitrificans BC 10102118 YP_004124770.1 CDS Alide_0096 NC_014910.1 103858 106059 D manually curated; TIGRFAM: TonB-dependent siderophore receptor; KEGG: neu:NE2433 TonB-dependent receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; tonb-dependent siderophore receptor 103858..106059 Alicycliphilus denitrificans BC 10102119 YP_004124771.1 CDS Alide_0097 NC_014910.1 106062 107231 D KEGG: neu:NE2432 hypothetical protein; hypothetical protein 106062..107231 Alicycliphilus denitrificans BC 10102120 YP_004124772.1 CDS Alide_0098 NC_014910.1 107228 107437 D KEGG: rpt:Rpal_2080 hypothetical protein; hypothetical protein 107228..107437 Alicycliphilus denitrificans BC 10102121 YP_004124773.1 CDS Alide_0099 NC_014910.1 107604 108365 D KEGG: dia:Dtpsy_0084 septum site-determining protein MinC; TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; septum site-determining protein minc 107604..108365 Alicycliphilus denitrificans BC 10102122 YP_004124774.1 CDS Alide_0100 NC_014910.1 108420 109235 D TIGRFAM: septum site-determining protein MinD; KEGG: dia:Dtpsy_0085 septum site-determining protein MinD; septum site-determining protein mind 108420..109235 Alicycliphilus denitrificans BC 10102123 YP_004124775.1 CDS Alide_0101 NC_014910.1 109242 109511 D KEGG: dia:Dtpsy_0086 cell division topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; cell division topological specificity factor mine 109242..109511 Alicycliphilus denitrificans BC 10102124 YP_004124776.1 CDS Alide_0102 NC_014910.1 109535 110473 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_1015 LysR family transcriptional regulator; LysR family transcriptional regulator complement(109535..110473) Alicycliphilus denitrificans BC 10102125 YP_004124777.1 CDS Alide_0103 NC_014910.1 110587 111564 D KEGG: pol:Bpro_4513 hypothetical protein; hypothetical protein 110587..111564 Alicycliphilus denitrificans BC 10102126 YP_004124778.1 CDS Alide_0104 NC_014910.1 111592 112755 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mes:Meso_4537 galactonate dehydratase; mandelate racemase/muconate lactonizing protein 111592..112755 Alicycliphilus denitrificans BC 10102127 YP_004124779.1 CDS Alide_0105 NC_014910.1 112786 113325 R KEGG: ajs:Ajs_0068 flavin reductase domain-containing protein; manually curated; PFAM: flavin reductase domain protein FMN-binding; flavin reductase domain-containing protein fmn-binding protein complement(112786..113325) Alicycliphilus denitrificans BC 10102128 YP_004124780.1 CDS Alide_0106 NC_014910.1 113432 114208 D PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_0088 alpha/beta hydrolase fold protein; alpha/beta hydrolase 113432..114208 Alicycliphilus denitrificans BC 10102129 YP_004124781.1 CDS Alide_0107 NC_014910.1 114282 114947 D PFAM: regulatory protein TetR; KEGG: ajs:Ajs_0073 TetR family transcriptional regulator; regulatory protein tetr 114282..114947 Alicycliphilus denitrificans BC 10102130 YP_004124782.1 CDS Alide_0108 NC_014910.1 114895 115317 R PFAM: UspA domain-containing protein; KEGG: ajs:Ajs_0074 UspA domain-containing protein; uspa domain-containing protein complement(114895..115317) Alicycliphilus denitrificans BC 10102131 YP_004124783.1 CDS Alide_0109 NC_014910.1 115419 116264 R PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0075 metallophosphoesterase; metallophosphoesterase complement(115419..116264) Alicycliphilus denitrificans BC 10102132 YP_004124784.1 CDS Alide_0110 NC_014910.1 116291 117262 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0076 LysR family transcriptional regulator; LysR family transcriptional regulator complement(116291..117262) Alicycliphilus denitrificans BC 10102133 YP_004124785.1 CDS Alide_0111 NC_014910.1 117388 117828 D KEGG: ajs:Ajs_0077 hypothetical protein; hypothetical protein 117388..117828 Alicycliphilus denitrificans BC 10102134 YP_004124786.1 CDS Alide_0112 NC_014910.1 117968 119836 R KEGG: dac:Daci_0114 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase (GTP); phosphoenolpyruvate carboxykinase (gtp) complement(117968..119836) Alicycliphilus denitrificans BC 10102135 YP_004124787.1 CDS Alide_0113 NC_014910.1 120176 120337 R KEGG: dia:Dtpsy_0098 hypothetical protein; hypothetical protein complement(120176..120337) Alicycliphilus denitrificans BC 10102136 YP_004124788.1 CDS Alide_0114 NC_014910.1 120427 121626 R KEGG: dia:Dtpsy_0099 threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; threonine dehydratase complement(120427..121626) Alicycliphilus denitrificans BC 10102137 YP_004124789.1 CDS Alide_0115 NC_014910.1 121729 123390 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0081 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase complement(121729..123390) Alicycliphilus denitrificans BC 10102138 YP_004124790.1 CDS Alide_0116 NC_014910.1 123446 126166 R KEGG: pfl:PFL_4078 magnesium-transporting ATPase MgtA; TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; magnesium-translocating p-type atpase complement(123446..126166) Alicycliphilus denitrificans BC 10102139 YP_004124791.1 CDS Alide_0117 NC_014910.1 126301 127332 R PFAM: homocysteine S-methyltransferase; KEGG: ajs:Ajs_0083 methionine synthase (B12-dependent); homocysteine s-methyltransferase complement(126301..127332) Alicycliphilus denitrificans BC 10102140 YP_004124792.1 CDS Alide_0118 NC_014910.1 127329 128330 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_0175 LysR family transcriptional regulator; LysR family transcriptional regulator complement(127329..128330) Alicycliphilus denitrificans BC 10102141 YP_004124793.1 CDS Alide_0119 NC_014910.1 128355 129518 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase complement(128355..129518) Alicycliphilus denitrificans BC 10102142 YP_004124794.1 CDS Alide_0120 NC_014910.1 129515 129898 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: aav:Aave_0177 cupin 2 domain-containing protein; cupin 2 barrel domain-containing protein complement(129515..129898) Alicycliphilus denitrificans BC 10102143 YP_004124795.1 CDS Alide_0121 NC_014910.1 129915 130880 R KEGG: aav:Aave_0180 hypothetical protein; hypothetical protein complement(129915..130880) Alicycliphilus denitrificans BC 10102144 YP_004124796.1 CDS Alide_0122 NC_014910.1 131138 133006 D TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; helicase domain protein; DEAD/DEAH box helicase domain protein; HRDC domain protein; KEGG: dia:Dtpsy_0103 ATP-dependent DNA helicase RecQ; SMART: helicase domain protein; DEAD-like helicase ; HRDC domain protein; ATP-dependent DNA helicase RecQ 131138..133006 Alicycliphilus denitrificans BC 10102145 YP_004124797.1 CDS Alide_0123 NC_014910.1 133010 133690 R KEGG: ajs:Ajs_0085 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; anaerobic ribonucleoside-triphosphate reductase activating protein complement(133010..133690) Alicycliphilus denitrificans BC 10102146 YP_004124798.1 CDS Alide_0124 NC_014910.1 133668 133868 R KEGG: dia:Dtpsy_0105 hypothetical protein; hypothetical protein complement(133668..133868) Alicycliphilus denitrificans BC 10102147 YP_004124799.1 CDS Alide_0125 NC_014910.1 133951 135981 R KEGG: dia:Dtpsy_0106 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; anaerobic ribonucleoside-triphosphate reductase complement(133951..135981) Alicycliphilus denitrificans BC 10102148 YP_004124800.1 CDS Alide_0126 NC_014910.1 136106 139408 R TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; diguanylate cyclase complement(136106..139408) Alicycliphilus denitrificans BC 10102149 YP_004124801.1 CDS Alide_0127 NC_014910.1 139694 140122 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dia:Dtpsy_0108 hemerythrin HHE cation binding domain-containing protein; hemerythrin hhe cation binding domain-containing protein complement(139694..140122) Alicycliphilus denitrificans BC 10102150 YP_004124802.1 CDS Alide_0128 NC_014910.1 140192 142501 R KEGG: dia:Dtpsy_0109 nitric oxide reductase large subunit; nitric oxide reductase large subunit complement(140192..142501) Alicycliphilus denitrificans BC 10102151 YP_004124803.1 CDS Alide_0129 NC_014910.1 142653 144266 D KEGG: dia:Dtpsy_0110 anaerobic nitric oxide reductase transcription regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 142653..144266 Alicycliphilus denitrificans BC 10102152 YP_004124804.1 CDS Alide_0130 NC_014910.1 144319 144981 R KEGG: ctt:CtCNB1_2843 hypothetical protein; hypothetical protein complement(144319..144981) Alicycliphilus denitrificans BC 10102153 YP_004124805.1 CDS Alide_0131 NC_014910.1 145218 146606 D TIGRFAM: L-serine dehydratase 1; KEGG: dia:Dtpsy_0112 L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; l-serine dehydratase 1 145218..146606 Alicycliphilus denitrificans BC 10102154 YP_004124806.1 CDS Alide_0132 NC_014910.1 146738 147688 D KEGG: dia:Dtpsy_0114 hypothetical protein; hypothetical protein 146738..147688 Alicycliphilus denitrificans BC 10102155 YP_004124807.1 CDS Alide_0133 NC_014910.1 147693 149267 D PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 147693..149267 Alicycliphilus denitrificans BC 10102156 YP_004124808.1 CDS Alide_0134 NC_014910.1 149285 150277 D KEGG: ajs:Ajs_0099 hypothetical protein; hypothetical protein 149285..150277 Alicycliphilus denitrificans BC 10102157 YP_004124809.1 CDS Alide_0135 NC_014910.1 150290 150745 D PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_0117 thioesterase superfamily protein; thioesterase superfamily protein 150290..150745 Alicycliphilus denitrificans BC 10102158 YP_004124810.1 CDS Alide_0136 NC_014910.1 150767 151777 R KEGG: dia:Dtpsy_0118 hypothetical protein; hypothetical protein complement(150767..151777) Alicycliphilus denitrificans BC 10102159 YP_004124811.1 CDS Alide_0137 NC_014910.1 151817 152803 R KEGG: dia:Dtpsy_0119 hypothetical protein; hypothetical protein complement(151817..152803) Alicycliphilus denitrificans BC 10102160 YP_004124812.1 CDS Alide_0138 NC_014910.1 152836 153990 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase complement(152836..153990) Alicycliphilus denitrificans BC 10102161 YP_004124813.1 CDS Alide_0139 NC_014910.1 154066 155613 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(154066..155613) Alicycliphilus denitrificans BC 10102162 YP_004124814.1 CDS Alide_0140 NC_014910.1 155819 156997 D TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_0122 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 155819..156997 Alicycliphilus denitrificans BC 10102163 YP_004124815.1 CDS Alide_0141 NC_014910.1 157053 157820 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 157053..157820 Alicycliphilus denitrificans BC 10102164 YP_004124816.1 CDS Alide_0142 NC_014910.1 157889 158887 D KEGG: dia:Dtpsy_0125 hypothetical protein; hypothetical protein 157889..158887 Alicycliphilus denitrificans BC 10102165 YP_004124817.1 CDS Alide_0143 NC_014910.1 158897 159703 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_0109 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 158897..159703 Alicycliphilus denitrificans BC 10102166 YP_004124818.1 CDS Alide_0144 NC_014910.1 159700 159804 D hypothetical protein 159700..159804 Alicycliphilus denitrificans BC 10102167 YP_004124819.1 CDS Alide_0145 NC_014910.1 159841 160620 D KEGG: dia:Dtpsy_0128 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 159841..160620 Alicycliphilus denitrificans BC 10102168 YP_004124820.1 CDS Alide_0146 NC_014910.1 160715 161824 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 160715..161824 Alicycliphilus denitrificans BC 10102169 YP_004124821.1 CDS Alide_0147 NC_014910.1 161850 162839 R KEGG: reh:H16_B1448 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein complement(161850..162839) Alicycliphilus denitrificans BC 10102170 YP_004124822.1 CDS Alide_0148 NC_014910.1 162883 163299 R PFAM: protein of unknown function DUF35; KEGG: reh:H16_A2147 hypothetical protein; hypothetical protein complement(162883..163299) Alicycliphilus denitrificans BC 10102171 YP_004124823.1 CDS Alide_0149 NC_014910.1 163301 164461 R KEGG: reh:H16_A2148 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase complement(163301..164461) Alicycliphilus denitrificans BC 10102172 YP_004124824.1 CDS Alide_0150 NC_014910.1 164484 165641 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reh:H16_A2149 acyl-CoA dehydrogenase, long-chain specific; acyl-CoA dehydrogenase complement(164484..165641) Alicycliphilus denitrificans BC 10102173 YP_004124825.1 CDS Alide_0151 NC_014910.1 165676 167217 R PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2150 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase/ligase complement(165676..167217) Alicycliphilus denitrificans BC 10102174 YP_004124826.1 CDS Alide_0152 NC_014910.1 167204 168139 R KEGG: reh:H16_A2151 acyl dehydratase; PFAM: MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase complement(167204..168139) Alicycliphilus denitrificans BC 10102175 YP_004124827.1 CDS Alide_0153 NC_014910.1 168157 169080 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reh:H16_A2152 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr complement(168157..169080) Alicycliphilus denitrificans BC 10102176 YP_004124828.1 CDS Alide_0154 NC_014910.1 169106 170089 R KEGG: reh:H16_A2153 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein complement(169106..170089) Alicycliphilus denitrificans BC 10102177 YP_004124829.1 CDS Alide_0155 NC_014910.1 170319 171104 D KEGG: reh:H16_A2154 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; transcriptional regulator iclr 170319..171104 Alicycliphilus denitrificans BC 10102178 YP_004124830.1 CDS Alide_0156 NC_014910.1 171124 172380 R KEGG: ajs:Ajs_0113 major facilitator superfamily transporter; manually curated; PFAM: major facilitator superfamily MFS_1; major facilitator superfamily protein complement(171124..172380) Alicycliphilus denitrificans BC 10102179 YP_004124831.1 CDS Alide_0157 NC_014910.1 172421 173284 R KEGG: dia:Dtpsy_0131 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; citryl-CoA lyase complement(172421..173284) Alicycliphilus denitrificans BC 10102180 YP_004124832.1 CDS Alide_0159 NC_014910.1 173667 174755 R KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein; transposase is4 family protein complement(173667..174755) Alicycliphilus denitrificans BC 10102182 YP_004124833.1 CDS Alide_0160 NC_014910.1 175711 177096 R PFAM: MmgE/PrpD family protein; KEGG: dia:Dtpsy_0134 MmgE/PrpD family protein; mmge/prpd family protein complement(175711..177096) Alicycliphilus denitrificans BC 10102183 YP_004124834.1 CDS Alide_0161 NC_014910.1 177147 178328 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f complement(177147..178328) Alicycliphilus denitrificans BC 10102184 YP_004124835.1 CDS Alide_0162 NC_014910.1 178339 179505 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_0198 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase complement(178339..179505) Alicycliphilus denitrificans BC 10102185 YP_004124836.1 CDS Alide_0163 NC_014910.1 179579 180472 R KEGG: dia:Dtpsy_0137 hypothetical protein; hypothetical protein complement(179579..180472) Alicycliphilus denitrificans BC 10102186 YP_004124837.1 CDS Alide_0164 NC_014910.1 180657 181574 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_0138 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 180657..181574 Alicycliphilus denitrificans BC 10102187 YP_004124838.1 CDS Alide_0165 NC_014910.1 181578 182471 D KEGG: ajs:Ajs_0121 dehydratase; PFAM: MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 181578..182471 Alicycliphilus denitrificans BC 10102188 YP_004124839.1 CDS Alide_0166 NC_014910.1 182553 183347 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_0140 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 182553..183347 Alicycliphilus denitrificans BC 10102189 YP_004124840.1 CDS Alide_0167 NC_014910.1 183484 184767 D PFAM: acetyl-CoA hydrolase/transferase; KEGG: ajs:Ajs_0123 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 183484..184767 Alicycliphilus denitrificans BC 10102190 YP_004124841.1 CDS Alide_0168 NC_014910.1 184834 186042 D TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ajs:Ajs_0124 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 184834..186042 Alicycliphilus denitrificans BC 10102191 YP_004124842.1 CDS Alide_0169 NC_014910.1 186057 186980 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_0188 LysR family transcriptional regulator; LysR family transcriptional regulator complement(186057..186980) Alicycliphilus denitrificans BC 10102192 YP_004124843.1 CDS Alide_0170 NC_014910.1 187158 188342 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_0189 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 187158..188342 Alicycliphilus denitrificans BC 10102193 YP_004124844.1 CDS Alide_0171 NC_014910.1 188357 189382 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_0190 alcohol dehydrogenase; alcohol dehydrogenase 188357..189382 Alicycliphilus denitrificans BC 10102194 YP_004124845.1 CDS Alide_0172 NC_014910.1 189379 190404 D KEGG: dac:Daci_0191 hypothetical protein; hypothetical protein 189379..190404 Alicycliphilus denitrificans BC 10102195 YP_004124846.1 CDS Alide_0173 NC_014910.1 190435 191343 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_3679 LysR family transcriptional regulator; LysR family transcriptional regulator complement(190435..191343) Alicycliphilus denitrificans BC 10102196 YP_004124847.1 CDS Alide_0174 NC_014910.1 191452 192435 D KEGG: aav:Aave_3678 hypothetical protein; hypothetical protein 191452..192435 Alicycliphilus denitrificans BC 10102197 YP_004124848.1 CDS Alide_0175 NC_014910.1 192432 193631 D TIGRFAM: amidohydrolase; KEGG: aav:Aave_3677 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 192432..193631 Alicycliphilus denitrificans BC 10102198 YP_004124849.1 CDS Alide_0176 NC_014910.1 193811 194791 D KEGG: ajs:Ajs_0125 hypothetical protein; hypothetical protein 193811..194791 Alicycliphilus denitrificans BC 10102199 YP_004124850.1 CDS Alide_0177 NC_014910.1 194793 196301 D PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_0144 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 194793..196301 Alicycliphilus denitrificans BC 10102200 YP_004124851.1 CDS Alide_0178 NC_014910.1 196319 197302 D KEGG: dia:Dtpsy_0145 hypothetical protein; hypothetical protein 196319..197302 Alicycliphilus denitrificans BC 10102201 YP_004124852.1 CDS Alide_0179 NC_014910.1 197357 198358 R KEGG: reh:H16_B1474 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein complement(197357..198358) Alicycliphilus denitrificans BC 10102202 YP_004124853.1 CDS Alide_0180 NC_014910.1 198379 199560 R PFAM: peptidase M20; peptidase dimerisation domain protein; manually curated; KEGG: reu:Reut_B4300 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; amidohydrolase complement(198379..199560) Alicycliphilus denitrificans BC 10102203 YP_004124854.1 CDS Alide_0181 NC_014910.1 199825 200244 D PFAM: protein of unknown function DUF35; KEGG: ajs:Ajs_0128 hypothetical protein; hypothetical protein 199825..200244 Alicycliphilus denitrificans BC 10102204 YP_004124855.1 CDS Alide_0182 NC_014910.1 200241 201449 D KEGG: ajs:Ajs_0129 thiolase; thiolase 200241..201449 Alicycliphilus denitrificans BC 10102205 YP_004124856.1 CDS Alide_0183 NC_014910.1 201469 202626 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_0148 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 201469..202626 Alicycliphilus denitrificans BC 10102206 YP_004124857.1 CDS Alide_0184 NC_014910.1 202623 203054 D PFAM: thioesterase superfamily protein; KEGG: dac:Daci_0175 thioesterase superfamily protein; thioesterase superfamily protein 202623..203054 Alicycliphilus denitrificans BC 10102207 YP_004124858.1 CDS Alide_0185 NC_014910.1 203051 203800 R KEGG: vei:Veis_2216 regulatory proteins, IclR; PFAM: regulatory protein IclR; SMART: regulatory protein IclR; regulatory protein iclr complement(203051..203800) Alicycliphilus denitrificans BC 10102208 YP_004124859.1 CDS Alide_0186 NC_014910.1 203931 204917 D PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: vei:Veis_2212 hypothetical protein; hypothetical protein 203931..204917 Alicycliphilus denitrificans BC 10102209 YP_004124860.1 CDS Alide_0187 NC_014910.1 204914 205774 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vei:Veis_2211 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 204914..205774 Alicycliphilus denitrificans BC 10102210 YP_004124861.1 CDS Alide_0188 NC_014910.1 205774 206922 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase 205774..206922 Alicycliphilus denitrificans BC 10102211 YP_004124862.1 CDS Alide_0189 NC_014910.1 206972 208591 D KEGG: reu:Reut_B4463 propionyl-CoA carboxylase; PFAM: carboxyl transferase; methylcrotonoyl-CoA carboxylase 206972..208591 Alicycliphilus denitrificans BC 10102212 YP_004124863.1 CDS Alide_0190 NC_014910.1 208602 209765 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reu:Reut_B4462 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase 208602..209765 Alicycliphilus denitrificans BC 10102213 YP_004124864.1 CDS Alide_0191 NC_014910.1 209767 210588 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_2207 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 209767..210588 Alicycliphilus denitrificans BC 10102214 YP_004124865.1 CDS Alide_0192 NC_014910.1 210602 212596 D PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: reu:Reut_B4460 carbamoyl-phosphate synthase subunit L; carbamoyl-phosphate synthase l chain ATP-binding protein 210602..212596 Alicycliphilus denitrificans BC 10102215 YP_004124866.1 CDS Alide_0193 NC_014910.1 212593 214407 D PFAM: protein of unknown function DUF1446; KEGG: reu:Reut_B4459 hypothetical protein; hypothetical protein 212593..214407 Alicycliphilus denitrificans BC 10102216 YP_004124867.1 CDS Alide_0194 NC_014910.1 214431 215411 D KEGG: reu:Reut_B4458 hypothetical protein; hypothetical protein 214431..215411 Alicycliphilus denitrificans BC 10102217 YP_004124868.1 CDS Alide_0195 NC_014910.1 215419 216639 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_2206 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 215419..216639 Alicycliphilus denitrificans BC 10102218 YP_004124869.1 CDS Alide_0196 NC_014910.1 216685 217602 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0150 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(216685..217602) Alicycliphilus denitrificans BC 10102219 YP_004124870.1 CDS Alide_0197 NC_014910.1 217712 218989 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dia:Dtpsy_0151 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 217712..218989 Alicycliphilus denitrificans BC 10102220 YP_004124871.1 CDS Alide_0198 NC_014910.1 219041 219940 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_0218 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(219041..219940) Alicycliphilus denitrificans BC 10102221 YP_004124872.1 CDS Alide_0199 NC_014910.1 220078 221091 D KEGG: ctt:CtCNB1_0219 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 220078..221091 Alicycliphilus denitrificans BC 10102222 YP_004124873.1 CDS Alide_0200 NC_014910.1 221223 222413 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 221223..222413 Alicycliphilus denitrificans BC 10102223 YP_004124874.1 CDS Alide_0201 NC_014910.1 222438 223730 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: dia:Dtpsy_0153 Glu/Leu/Phe/Val dehydrogenase; glu/leu/phe/val dehydrogenase complement(222438..223730) Alicycliphilus denitrificans BC 10102224 YP_004124875.1 CDS Alide_0202 NC_014910.1 223917 224366 D PFAM: transmembrane pair domain-containing protein; KEGG: dia:Dtpsy_0156 transmembrane pair domain protein; transmembrane pair domain-containing protein 223917..224366 Alicycliphilus denitrificans BC 10102225 YP_004124876.1 CDS Alide_0204 NC_014910.1 225477 228212 D TIGRFAM: methionine synthase; KEGG: dac:Daci_0232 methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region; methionine synthase 225477..228212 Alicycliphilus denitrificans BC 10102227 YP_004124877.1 CDS Alide_0205 NC_014910.1 228371 231460 D TIGRFAM: CRISPR-associated protein, Csn1 family; KEGG: vei:Veis_1230 CRISPR-associated endonuclease Csn1 family protein; crispr-associated protein, csn1 family 228371..231460 Alicycliphilus denitrificans BC 10102228 YP_004124878.1 CDS Alide_0206 NC_014910.1 231466 232395 D KEGG: vei:Veis_1231 CRISPR-associated Cas1 family protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; crispr-associated protein cas1 231466..232395 Alicycliphilus denitrificans BC 10102229 YP_004124879.1 CDS Alide_0207 NC_014910.1 232438 232743 D KEGG: vei:Veis_1232 CRISPR-associated Cas2 family protein; TIGRFAM: CRISPR-associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2; crispr-associated protein cas2 232438..232743 Alicycliphilus denitrificans BC 10102230 YP_004124880.1 CDS Alide_0209 NC_014910.1 233693 234955 R PFAM: conjugation TrbI family protein; KEGG: ajs:Ajs_2902 conjugation TrbI family protein; conjugation trbi family protein complement(233693..234955) Alicycliphilus denitrificans BC 10102232 YP_004124881.1 CDS Alide_0210 NC_014910.1 234957 235937 R KEGG: ajs:Ajs_2903 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; p-type conjugative transfer protein trbg complement(234957..235937) Alicycliphilus denitrificans BC 10102233 YP_004124882.1 CDS Alide_0211 NC_014910.1 235934 236638 R KEGG: rpi:Rpic_2651 conjugal transfer protein TrbF; conjugal transfer protein trbf complement(235934..236638) Alicycliphilus denitrificans BC 10102234 YP_004124883.1 CDS Alide_0212 NC_014910.1 236657 237991 R KEGG: ajs:Ajs_2905 conjugal transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; p-type conjugative transfer protein trbl complement(236657..237991) Alicycliphilus denitrificans BC 10102235 YP_004124884.1 CDS Alide_0213 NC_014910.1 238004 238729 R TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: ajs:Ajs_2907 conjugal transfer protein TrbJ; p-type conjugative transfer protein trbj complement(238004..238729) Alicycliphilus denitrificans BC 10102236 YP_004124885.1 CDS Alide_0214 NC_014910.1 238726 241161 R KEGG: ajs:Ajs_2908 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase; type IV transport system protein VirB complement(238726..241161) Alicycliphilus denitrificans BC 10102237 YP_004124886.1 CDS Alide_0215 NC_014910.1 241171 241443 R KEGG: ajs:Ajs_2909 conjugal transfer TrbD transmembrane protein; conjugal transfer trbd transmembrane protein complement(241171..241443) Alicycliphilus denitrificans BC 10102238 YP_004124887.1 CDS Alide_0216 NC_014910.1 241440 241817 R PFAM: Conjugal transfer protein TrbC; KEGG: dac:Daci_2698 conjugal transfer protein TrbC; conjugal transfer protein trbc complement(241440..241817) Alicycliphilus denitrificans BC 10102239 YP_004124888.1 CDS Alide_0217 NC_014910.1 241814 242848 R KEGG: ajs:Ajs_2911 type II secretion system protein E; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; p-type conjugative transfer atpase trbb complement(241814..242848) Alicycliphilus denitrificans BC 10102240 YP_004124889.1 CDS Alide_0218 NC_014910.1 242845 243291 R KEGG: ajs:Ajs_2912 CopG/DNA-binding domain-containing protein; copg/DNA-binding domain-containing protein complement(242845..243291) Alicycliphilus denitrificans BC 10102241 YP_004124890.1 CDS Alide_0219 NC_014910.1 243288 245291 R PFAM: TRAG family protein; KEGG: dac:Daci_2701 conjugal transfer coupling protein TraG; trag family protein complement(243288..245291) Alicycliphilus denitrificans BC 10102242 YP_004124891.1 CDS Alide_0220 NC_014910.1 245507 245779 R KEGG: bmj:BMULJ_00894 probable lipoprotein; lipoprotein complement(245507..245779) Alicycliphilus denitrificans BC 10102243 YP_004124892.1 CDS Alide_0221 NC_014910.1 245815 246708 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sml:Smlt1302 LysR family transcriptional regulator; LysR family transcriptional regulator complement(245815..246708) Alicycliphilus denitrificans BC 10102244 YP_004124893.1 CDS Alide_0222 NC_014910.1 246778 249966 R KEGG: ajs:Ajs_1849 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, czca family complement(246778..249966) Alicycliphilus denitrificans BC 10102245 YP_004124894.1 CDS Alide_0223 NC_014910.1 249983 251575 R KEGG: ajs:Ajs_1848 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit complement(249983..251575) Alicycliphilus denitrificans BC 10102246 YP_004124895.1 CDS Alide_0224 NC_014910.1 251578 252903 R PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_1847 outer membrane efflux protein; outer membrane efflux protein complement(251578..252903) Alicycliphilus denitrificans BC 10102247 YP_004124896.1 CDS Alide_0225 NC_014910.1 253070 253423 R manually curated; KEGG: dar:Daro_2621 hypothetical protein; hypothetical protein complement(253070..253423) Alicycliphilus denitrificans BC 10102248 YP_004124897.1 CDS Alide_0226 NC_014910.1 253630 253965 R KEGG: ajs:Ajs_2700 hypothetical protein; hypothetical protein complement(253630..253965) Alicycliphilus denitrificans BC 10102249 YP_004124898.1 CDS Alide_0227 NC_014910.1 254110 254796 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: dia:Dtpsy_2215 two component heavy metal response transcriptional regulator, winged helix family; SMART: response regulator receiver; heavy metal response regulator 254110..254796 Alicycliphilus denitrificans BC 10102250 YP_004124899.1 CDS Alide_0228 NC_014910.1 254925 256115 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: dia:Dtpsy_2216 heavy metal sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; heavy metal sensor kinase 254925..256115 Alicycliphilus denitrificans BC 10102251 YP_004124900.1 CDS Alide_0229 NC_014910.1 256151 256843 R KEGG: ara:Arad_2530 transporter; transporter complement(256151..256843) Alicycliphilus denitrificans BC 10102252 YP_004124901.1 CDS Alide_0230 NC_014910.1 256847 257137 R manually curated; KEGG: sfr:Sfri_3475 hypothetical protein; hypothetical protein complement(256847..257137) Alicycliphilus denitrificans BC 10102253 YP_004124902.1 CDS Alide_0231 NC_014910.1 257160 259469 R KEGG: vap:Vapar_3562 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase complement(257160..259469) Alicycliphilus denitrificans BC 10102254 YP_004124903.1 CDS Alide_0232 NC_014910.1 259708 260163 D SMART: regulatory protein MerR; manually curated; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; KEGG: mpt:Mpe_A1657 transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; cd(ii)/pb(ii)-responsive transcriptional regulator 259708..260163 Alicycliphilus denitrificans BC 10102255 YP_004124904.1 CDS Alide_0233 NC_014910.1 260164 262146 R KEGG: dac:Daci_0453 hypothetical protein; hypothetical protein complement(260164..262146) Alicycliphilus denitrificans BC 10102256 YP_004124905.1 CDS Alide_0234 NC_014910.1 262143 262598 R manually curated; KEGG: sml:Smlt1309 hypothetical protein; hypothetical protein complement(262143..262598) Alicycliphilus denitrificans BC 10102257 YP_004124906.1 CDS Alide_0235 NC_014910.1 262595 263194 R PFAM: Peptidase S26, conserved region; KEGG: dia:Dtpsy_1292 TraF peptidase. Serine peptidase. MEROPS family S26C; peptidase s26 complement(262595..263194) Alicycliphilus denitrificans BC 10102258 YP_004124907.1 CDS Alide_0236 NC_014910.1 263191 263736 R KEGG: dia:Dtpsy_3522 hypothetical protein; hypothetical protein complement(263191..263736) Alicycliphilus denitrificans BC 10102259 YP_004124908.1 CDS Alide_0237 NC_014910.1 263733 264017 R KEGG: aav:Aave_0688 hypothetical protein; hypothetical protein complement(263733..264017) Alicycliphilus denitrificans BC 10102260 YP_004124909.1 CDS Alide_0238 NC_014910.1 264014 264652 R KEGG: tgr:Tgr7_1879 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase complement(264014..264652) Alicycliphilus denitrificans BC 10102261 YP_004124910.1 CDS Alide_0239 NC_014910.1 264906 265739 R PFAM: Replication initiator protein A; KEGG: dac:Daci_2721 replication initiator and transcription repressor protein; replication initiator protein a complement(264906..265739) Alicycliphilus denitrificans BC 10102262 YP_004124911.1 CDS Alide_0240 NC_014910.1 265766 266047 R KEGG: ajs:Ajs_2652 hypothetical protein; hypothetical protein complement(265766..266047) Alicycliphilus denitrificans BC 10102263 YP_004124912.1 CDS Alide_0241 NC_014910.1 266131 266904 R KEGG: ajs:Ajs_2651 hypothetical protein; hypothetical protein complement(266131..266904) Alicycliphilus denitrificans BC 10102264 YP_004124913.1 CDS Alide_0242 NC_014910.1 267233 267583 R KEGG: dia:Dtpsy_3529 lipoprotein; lipoprotein complement(267233..267583) Alicycliphilus denitrificans BC 10102265 YP_004124914.1 CDS Alide_0243 NC_014910.1 267842 268135 D KEGG: dia:Dtpsy_3530 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 267842..268135 Alicycliphilus denitrificans BC 10102266 YP_004124915.1 CDS Alide_0244 NC_014910.1 268520 268834 R PFAM: protein of unknown function DUF736; KEGG: aav:Aave_0681 hypothetical protein; hypothetical protein complement(268520..268834) Alicycliphilus denitrificans BC 10102267 YP_004124916.1 CDS Alide_0245 NC_014910.1 269905 270819 D KEGG: rpc:RPC_3544 phage associated protein; phage associated protein 269905..270819 Alicycliphilus denitrificans BC 10102268 YP_004124917.1 CDS Alide_0246 NC_014910.1 270960 271802 D PFAM: RelA/SpoT domain protein; KEGG: rpc:RPC_3545 RelA/SpoT; rela/spot domain-containing protein 270960..271802 Alicycliphilus denitrificans BC 10102269 YP_004124918.1 CDS Alide_0247 NC_014910.1 271936 272145 R KEGG: dac:Daci_2732 hypothetical protein; hypothetical protein complement(271936..272145) Alicycliphilus denitrificans BC 10102270 YP_004124919.1 CDS Alide_0248 NC_014910.1 272208 274262 R KEGG: dia:Dtpsy_3534 ParB domain protein nuclease; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parb domain-containing protein nuclease complement(272208..274262) Alicycliphilus denitrificans BC 10102271 YP_004124920.1 CDS Alide_0249 NC_014910.1 274328 275155 R KEGG: ajs:Ajs_2944 hypothetical protein; hypothetical protein complement(274328..275155) Alicycliphilus denitrificans BC 10102272 YP_004124921.1 CDS Alide_0250 NC_014910.1 276176 276409 D KEGG: hse:Hsero_2905 hypothetical protein; hypothetical protein 276176..276409 Alicycliphilus denitrificans BC 10102273 YP_004124922.1 CDS Alide_0251 NC_014910.1 276459 276767 D manually curated; PFAM: helix-turn-helix domain protein; KEGG: hse:Hsero_2904 XRE family transcription regulator protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 276459..276767 Alicycliphilus denitrificans BC 10102274 YP_004124923.1 CDS Alide_0252 NC_014910.1 276730 277758 D KEGG: rme:Rmet_1473 retron reverse transcriptase; retron reverse transcriptase 276730..277758 Alicycliphilus denitrificans BC 10102275 YP_004124924.1 CDS Alide_0253 NC_014910.1 277930 278247 R KEGG: ajs:Ajs_2957 transcriptional regulator; transcriptional regulator complement(277930..278247) Alicycliphilus denitrificans BC 10102276 YP_004124925.1 CDS Alide_0254 NC_014910.1 278244 278573 R KEGG: bpr:GBP346_A0938 probable addiction module killer protein; TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; addiction module killer protein complement(278244..278573) Alicycliphilus denitrificans BC 10102277 YP_004124926.1 CDS Alide_0255 NC_014910.1 278679 280043 R PFAM: integrase family protein; KEGG: ajs:Ajs_2959 phage integrase family protein; integrase family protein complement(278679..280043) Alicycliphilus denitrificans BC 10102278 YP_004124927.1 CDS Alide_0256 NC_014910.1 284052 284594 R KEGG: dia:Dtpsy_0168 shikimate kinase; PFAM: shikimate kinase; shikimate kinase complement(284052..284594) Alicycliphilus denitrificans BC 10102279 YP_004124928.1 CDS Alide_0257 NC_014910.1 284700 285599 D PFAM: ribonuclease BN; KEGG: ajs:Ajs_0151 ribonuclease BN; ribonuclease bn 284700..285599 Alicycliphilus denitrificans BC 10102280 YP_004124929.1 CDS Alide_0258 NC_014910.1 285725 286441 D KEGG: ajs:Ajs_0152 17 kDa surface antigen; hypothetical protein 285725..286441 Alicycliphilus denitrificans BC 10102281 YP_004124930.1 CDS Alide_0259 NC_014910.1 286498 287271 R KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin-NADP reductase complement(286498..287271) Alicycliphilus denitrificans BC 10102282 YP_004124931.1 CDS Alide_0260 NC_014910.1 287464 288660 D PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_0172 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 287464..288660 Alicycliphilus denitrificans BC 10102283 YP_004124932.1 CDS Alide_0261 NC_014910.1 288677 290575 D PFAM: inner-membrane translocator; KEGG: ajs:Ajs_0155 inner-membrane translocator; inner-membrane translocator 288677..290575 Alicycliphilus denitrificans BC 10102284 YP_004124933.1 CDS Alide_0262 NC_014910.1 290572 292110 D KEGG: vei:Veis_0860 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 290572..292110 Alicycliphilus denitrificans BC 10102285 YP_004124934.1 CDS Alide_0263 NC_014910.1 292258 295158 D KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease; PFAM: peptidase C1A papain; SMART: peptidase C1A papain; peptidase c1a papain 292258..295158 Alicycliphilus denitrificans BC 10102286 YP_004124935.1 CDS Alide_0266 NC_014910.1 297101 298636 R TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: dia:Dtpsy_0179 Mg chelatase, subunit ChlI; SMART: AAA ATPase; mg chelatase, subunit chli complement(297101..298636) Alicycliphilus denitrificans BC 10102289 YP_004124936.1 CDS Alide_0267 NC_014910.1 298775 299506 D PFAM: Conserved hypothetical protein CHP02001; KEGG: dia:Dtpsy_0180 hypothetical protein; hypothetical protein 298775..299506 Alicycliphilus denitrificans BC 10102290 YP_004124937.1 CDS Alide_0268 NC_014910.1 299526 299864 D PFAM: nitrogen regulatory protein P-II; KEGG: aav:Aave_0233 nitrogen regulatory protein P-II; nitrogen regulatory protein p-ii 299526..299864 Alicycliphilus denitrificans BC 10102291 YP_004124938.1 CDS Alide_0269 NC_014910.1 299887 301275 D KEGG: ajs:Ajs_0164 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter; ammonium transporter 299887..301275 Alicycliphilus denitrificans BC 10102292 YP_004124939.1 CDS Alide_0270 NC_014910.1 301369 302247 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_5424 LysR family transcriptional regulator; LysR family transcriptional regulator 301369..302247 Alicycliphilus denitrificans BC 10102293 YP_004124940.1 CDS Alide_0271 NC_014910.1 302321 303196 R KEGG: rme:Rmet_4431 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase complement(302321..303196) Alicycliphilus denitrificans BC 10102294 YP_004124941.1 CDS Alide_0272 NC_014910.1 303193 304623 R PFAM: Aldehyde Dehydrogenase; KEGG: amd:AMED_3840 succinate-semialdehyde dehydrogenase (NADP+); aldehyde dehydrogenase complement(303193..304623) Alicycliphilus denitrificans BC 10102295 YP_004124942.1 CDS Alide_0273 NC_014910.1 304623 305603 R KEGG: bbr:BB3069 hypothetical protein; hypothetical protein complement(304623..305603) Alicycliphilus denitrificans BC 10102296 YP_004124943.1 CDS Alide_0274 NC_014910.1 305633 306412 R KEGG: mrd:Mrad2831_3256 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein complement(305633..306412) Alicycliphilus denitrificans BC 10102297 YP_004124944.1 CDS Alide_0275 NC_014910.1 306409 307635 R KEGG: reu:Reut_B3887 UreA/short-chain amide ABC transporter; urea/short-chain amide ABC transporter complement(306409..307635) Alicycliphilus denitrificans BC 10102298 YP_004124945.1 CDS Alide_0276 NC_014910.1 307797 308687 R KEGG: esa:ESA_04058 hypothetical protein; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(307797..308687) Alicycliphilus denitrificans BC 10102299 YP_004124946.1 CDS Alide_0277 NC_014910.1 308684 309544 R PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_2534 carboxylesterase protein; alpha/beta hydrolase complement(308684..309544) Alicycliphilus denitrificans BC 10102300 YP_004124947.1 CDS Alide_0278 NC_014910.1 309534 309884 R KEGG: tcu:Tcur_0017 hypothetical protein; hypothetical protein complement(309534..309884) Alicycliphilus denitrificans BC 10102301 YP_004124948.1 CDS Alide_0279 NC_014910.1 309967 311034 R KEGG: vap:Vapar_4786 membrane protein AbrB duplication; TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase; membrane protein abrb duplication complement(309967..311034) Alicycliphilus denitrificans BC 10102302 YP_004124949.1 CDS Alide_0280 NC_014910.1 311037 312383 R PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_3318 MmgE/PrpD family protein; mmge/prpd family protein complement(311037..312383) Alicycliphilus denitrificans BC 10102303 YP_004124950.1 CDS Alide_0281 NC_014910.1 312538 313692 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rme:Rmet_5425 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase 312538..313692 Alicycliphilus denitrificans BC 10102304 YP_004124951.1 CDS Alide_0282 NC_014910.1 313716 314690 D KEGG: vei:Veis_3320 hypothetical protein; hypothetical protein 313716..314690 Alicycliphilus denitrificans BC 10102305 YP_004124952.1 CDS Alide_0283 NC_014910.1 314687 316762 D PFAM: CoA-binding domain protein; KEGG: dac:Daci_1885 CoA-binding domain-containing protein; CoA-binding protein 314687..316762 Alicycliphilus denitrificans BC 10102306 YP_004124953.1 CDS Alide_0284 NC_014910.1 316836 317948 D PFAM: FAD linked oxidase domain protein; KEGG: dia:Dtpsy_0184 FAD linked oxidase domain protein; fad linked oxidase domain-containing protein 316836..317948 Alicycliphilus denitrificans BC 10102307 YP_004124954.1 CDS Alide_0285 NC_014910.1 317951 318724 D PFAM: protein of unknown function DUF1275; KEGG: dia:Dtpsy_0185 protein of unknown function DUF1275; hypothetical protein 317951..318724 Alicycliphilus denitrificans BC 10102308 YP_004124955.1 CDS Alide_0286 NC_014910.1 318761 319999 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ajs:Ajs_0168 glycolate oxidase iron-sulfur subunit; hypothetical protein 318761..319999 Alicycliphilus denitrificans BC 10102309 YP_004124956.1 CDS Alide_0287 NC_014910.1 320062 320793 D PFAM: Fertility inhibition FinO-like; KEGG: dia:Dtpsy_0187 ProQ activator of osmoprotectant transporter ProP; fertility inhibition fino-like protein 320062..320793 Alicycliphilus denitrificans BC 10102310 YP_004124957.1 CDS Alide_0288 NC_014910.1 320851 321735 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0174 hypothetical protein; hypothetical protein complement(320851..321735) Alicycliphilus denitrificans BC 10102311 YP_004124958.1 CDS Alide_0289 NC_014910.1 321789 323066 R PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_0193 lysophospholipid transporter LplT; major facilitator superfamily protein complement(321789..323066) Alicycliphilus denitrificans BC 10102312 YP_004124959.1 CDS Alide_0290 NC_014910.1 323210 324304 D TIGRFAM: alanine racemase; KEGG: ajs:Ajs_0176 alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 323210..324304 Alicycliphilus denitrificans BC 10102313 YP_004124960.1 CDS Alide_0291 NC_014910.1 324523 325542 D KEGG: dia:Dtpsy_0196 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; cytochrome-c peroxidase 324523..325542 Alicycliphilus denitrificans BC 10102314 YP_004124961.1 CDS Alide_0292 NC_014910.1 325622 326236 R PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_0197 glutathione S-transferase domain protein; glutathione s-transferase domain-containing protein complement(325622..326236) Alicycliphilus denitrificans BC 10102315 YP_004124962.1 CDS Alide_0293 NC_014910.1 326367 327749 D KEGG: dia:Dtpsy_0199 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; DNA repair protein rada 326367..327749 Alicycliphilus denitrificans BC 10102316 YP_004124963.1 CDS Alide_0294 NC_014910.1 327753 328739 R KEGG: rme:Rmet_1769 hypothetical protein; hypothetical protein complement(327753..328739) Alicycliphilus denitrificans BC 10102317 YP_004124964.1 CDS Alide_0295 NC_014910.1 328764 330188 R PFAM: Amidase; KEGG: reh:H16_A1882 Asp-tRNA Asn / Glu-tRNA Gln amidotransferase A subunit or related amidase; amidase complement(328764..330188) Alicycliphilus denitrificans BC 10102318 YP_004124965.1 CDS Alide_0296 NC_014910.1 330354 330770 D KEGG: ajs:Ajs_0181 hypothetical protein; hypothetical protein 330354..330770 Alicycliphilus denitrificans BC 10102319 YP_004124966.1 CDS Alide_0297 NC_014910.1 330815 331753 D KEGG: ajs:Ajs_0182 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; branched-chain amino acid aminotransferase 330815..331753 Alicycliphilus denitrificans BC 10102320 YP_004124967.1 CDS Alide_0298 NC_014910.1 331761 331967 D PFAM: Zinc finger, CHCC-type; KEGG: ajs:Ajs_0183 hypothetical protein; zinc finger, chcc-type 331761..331967 Alicycliphilus denitrificans BC 10102321 YP_004124968.1 CDS Alide_0299 NC_014910.1 332042 333394 D PFAM: O-antigen polymerase; KEGG: ajs:Ajs_0184 O-antigen polymerase; o-antigen polymerase 332042..333394 Alicycliphilus denitrificans BC 10102322 YP_004124969.1 CDS Alide_0300 NC_014910.1 333387 334502 D PFAM: glycosyl transferase group 1; KEGG: ajs:Ajs_0185 glycosyl transferase, group 1; group 1 glycosyl transferase 333387..334502 Alicycliphilus denitrificans BC 10102323 YP_004124970.1 CDS Alide_0301 NC_014910.1 334499 335545 D PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0186 glycosyl transferase family protein; family 2 glycosyl transferase 334499..335545 Alicycliphilus denitrificans BC 10102324 YP_004124971.1 CDS Alide_0302 NC_014910.1 335542 336516 D KEGG: ajs:Ajs_0187 hypothetical protein; hypothetical protein 335542..336516 Alicycliphilus denitrificans BC 10102325 YP_004124972.1 CDS Alide_0303 NC_014910.1 336585 337649 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_0188 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(336585..337649) Alicycliphilus denitrificans BC 10102326 YP_004124973.1 CDS Alide_0304 NC_014910.1 337646 338512 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0189 LysR family transcriptional regulator; LysR family transcriptional regulator complement(337646..338512) Alicycliphilus denitrificans BC 10102327 YP_004124974.1 CDS Alide_0305 NC_014910.1 338568 339797 D KEGG: dia:Dtpsy_0209 protein of unknown function DUF1228; hypothetical protein 338568..339797 Alicycliphilus denitrificans BC 10102328 YP_004124975.1 CDS Alide_0306 NC_014910.1 339801 340520 R PFAM: MOSC domain containing protein; KEGG: dia:Dtpsy_0210 MOSC domain containing protein; MOSC-domain-containing protein complement(339801..340520) Alicycliphilus denitrificans BC 10102329 YP_004124976.1 CDS Alide_0307 NC_014910.1 340517 341077 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dia:Dtpsy_0211 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase complement(340517..341077) Alicycliphilus denitrificans BC 10102330 YP_004124977.1 CDS Alide_0308 NC_014910.1 341096 341590 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: oca:OCAR_5014 activator of HSP90 ATPase 1 family protein; activator of hsp90 atpase 1 family protein complement(341096..341590) Alicycliphilus denitrificans BC 10102331 YP_004124978.1 CDS Alide_0309 NC_014910.1 341690 342151 R PFAM: MaoC domain protein dehydratase; KEGG: dac:Daci_0013 dehydratase; MaoC domain-containing protein complement(341690..342151) Alicycliphilus denitrificans BC 10102332 YP_004124979.1 CDS Alide_0310 NC_014910.1 342173 343144 R KEGG: dac:Daci_0012 hypothetical protein; hypothetical protein complement(342173..343144) Alicycliphilus denitrificans BC 10102333 YP_004124980.1 CDS Alide_0311 NC_014910.1 343298 344227 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_0011 LysR family transcriptional regulator; LysR family transcriptional regulator 343298..344227 Alicycliphilus denitrificans BC 10102334 YP_004124981.1 CDS Alide_0312 NC_014910.1 344352 345518 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_0010 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 344352..345518 Alicycliphilus denitrificans BC 10102335 YP_004124982.1 CDS Alide_0313 NC_014910.1 345536 346747 R KEGG: dia:Dtpsy_0212 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein complement(345536..346747) Alicycliphilus denitrificans BC 10102336 YP_004124983.1 CDS Alide_0314 NC_014910.1 346757 347467 R KEGG: ajs:Ajs_0194 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver complement(346757..347467) Alicycliphilus denitrificans BC 10102337 YP_004124984.1 CDS Alide_0315 NC_014910.1 347563 348921 R PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_0214 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(347563..348921) Alicycliphilus denitrificans BC 10102338 YP_004124985.1 CDS Alide_0316 NC_014910.1 348931 349596 D KEGG: dia:Dtpsy_0215 transcriptional regulator, AraC family; PFAM: Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain; cupin 2 barrel domain-containing protein 348931..349596 Alicycliphilus denitrificans BC 10102339 YP_004124986.1 CDS Alide_0317 NC_014910.1 349710 350603 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0201 hypothetical protein; hypothetical protein 349710..350603 Alicycliphilus denitrificans BC 10102340 YP_004124987.1 CDS Alide_0318 NC_014910.1 350600 351454 D PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_0203 peptidase M48, Ste24p; peptidase m48 ste24p 350600..351454 Alicycliphilus denitrificans BC 10102341 YP_004124988.1 CDS Alide_0321 NC_014910.1 352011 352766 R KEGG: ajs:Ajs_0204 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(352011..352766) Alicycliphilus denitrificans BC 10102344 YP_004124989.1 CDS Alide_0322 NC_014910.1 352768 354474 R KEGG: lch:Lcho_3364 sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; Activator of aromatic catabolism; 4-vinyl reductase 4VR; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein complement(352768..354474) Alicycliphilus denitrificans BC 10102345 YP_004124990.1 CDS Alide_0323 NC_014910.1 354706 355017 D PFAM: Phenol hydroxylase subunit; KEGG: avn:Avin_30760 multi-component phenol hydoxylase, assembly subunit; LapK; phenol hydroxylase subunit 354706..355017 Alicycliphilus denitrificans BC 10102346 YP_004124991.1 CDS Alide_0324 NC_014910.1 355061 356053 D KEGG: azo:azo2443 phenol hydroxylase, subunit P1; PFAM: methane/phenol/toluene hydroxylase; phenol 2-monooxygenase 355061..356053 Alicycliphilus denitrificans BC 10102347 YP_004124992.1 CDS Alide_0325 NC_014910.1 356076 356345 D PFAM: monooxygenase component MmoB/DmpM; KEGG: azo:azo2442 phenol hydrolase, subunit P2; monooxygenase component mmob/dmpm 356076..356345 Alicycliphilus denitrificans BC 10102348 YP_004124993.1 CDS Alide_0326 NC_014910.1 356371 357918 D PFAM: methane/phenol/toluene hydroxylase; YHS domain-containing protein; KEGG: azo:azo2441 phenol hydroxylase, subunit P3; methane/phenol/toluene hydroxylase 356371..357918 Alicycliphilus denitrificans BC 10102349 YP_004124994.1 CDS Alide_0327 NC_014910.1 357985 358341 D PFAM: Phenol hydroxylase conserved region; KEGG: rpf:Rpic12D_3551 phenol hydroxylase conserved region; phenol hydroxylase 357985..358341 Alicycliphilus denitrificans BC 10102350 YP_004124995.1 CDS Alide_0328 NC_014910.1 358412 359482 D PFAM: Oxidoreductase FAD-binding domain protein; ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: azo:azo1850 phenol 2-monooxygenase; oxidoreductase FAD-binding domain-containing protein 358412..359482 Alicycliphilus denitrificans BC 10102351 YP_004124996.1 CDS Alide_0329 NC_014910.1 359496 359837 D PFAM: ferredoxin; KEGG: ajs:Ajs_0217 ferredoxin; ferredoxin 359496..359837 Alicycliphilus denitrificans BC 10102352 YP_004124997.1 CDS Alide_0330 NC_014910.1 359860 360786 D KEGG: ajs:Ajs_0218 catechol 2,3-dioxygenase; TIGRFAM: catechol 2,3 dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; catechol 2,3 dioxygenase 359860..360786 Alicycliphilus denitrificans BC 10102353 YP_004124998.1 CDS Alide_0331 NC_014910.1 360786 361217 D PFAM: protein of unknown function DUF336; KEGG: ajs:Ajs_0219 hypothetical protein; hypothetical protein 360786..361217 Alicycliphilus denitrificans BC 10102354 YP_004124999.1 CDS Alide_0334 NC_014910.1 362556 363461 D KEGG: ctt:CtCNB1_3154 ZorfX; hypothetical protein 362556..363461 Alicycliphilus denitrificans BC 10102357 YP_004125000.1 CDS Alide_0335 NC_014910.1 364232 365692 D KEGG: ajs:Ajs_0220 betaine-aldehyde dehydrogenase; TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; 2-hydroxymuconic semialdehyde dehydrogenase 364232..365692 Alicycliphilus denitrificans BC 10102358 YP_004125001.1 CDS Alide_0336 NC_014910.1 365754 366617 D PFAM: alpha/beta hydrolase fold; KEGG: ctt:CtCNB1_3150 alpha/beta hydrolase fold protein; alpha/beta hydrolase 365754..366617 Alicycliphilus denitrificans BC 10102359 YP_004125002.1 CDS Alide_0337 NC_014910.1 366622 367404 D TIGRFAM: 2-oxopent-4-enoate hydratase; KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase; 2-oxopent-4-enoate hydratase 366622..367404 Alicycliphilus denitrificans BC 10102360 YP_004125003.1 CDS Alide_0338 NC_014910.1 367423 368337 D TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: ajs:Ajs_0223 acetaldehyde dehydrogenase; PFAM: Acetaldehyde dehydrogenase ; Semialdehyde dehydrogenase NAD - binding; acetaldehyde dehydrogenase 367423..368337 Alicycliphilus denitrificans BC 10102361 YP_004125004.1 CDS Alide_0339 NC_014910.1 368352 369389 D KEGG: ajs:Ajs_0224 4-hydroxy-2-ketovalerate aldolase; TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; PFAM: pyruvate carboxyltransferase; DmpG communication domain protein; 4-hydroxy-2-oxovalerate aldolase 368352..369389 Alicycliphilus denitrificans BC 10102362 YP_004125005.1 CDS Alide_0340 NC_014910.1 369423 370211 D TIGRFAM: 4-oxalocrotonate decarboxylase; KEGG: ajs:Ajs_0225 4-oxalocrotonate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-oxalocrotonate decarboxylase 369423..370211 Alicycliphilus denitrificans BC 10102363 YP_004125006.1 CDS Alide_0341 NC_014910.1 370252 371220 D KEGG: ctt:CtCNB1_3145 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 370252..371220 Alicycliphilus denitrificans BC 10102364 YP_004125007.1 CDS Alide_0342 NC_014910.1 371247 371438 D KEGG: ajs:Ajs_0227 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 371247..371438 Alicycliphilus denitrificans BC 10102365 YP_004125008.1 CDS Alide_0343 NC_014910.1 371503 372141 R KEGG: ajs:Ajs_0228 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein complement(371503..372141) Alicycliphilus denitrificans BC 10102366 YP_004125009.1 CDS Alide_0344 NC_014910.1 372207 372959 R KEGG: dac:Daci_4281 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr complement(372207..372959) Alicycliphilus denitrificans BC 10102367 YP_004125010.1 CDS Alide_0345 NC_014910.1 373084 374064 D KEGG: dac:Daci_4280 hypothetical protein; hypothetical protein 373084..374064 Alicycliphilus denitrificans BC 10102368 YP_004125011.1 CDS Alide_0346 NC_014910.1 374072 374944 D PFAM: amidohydrolase 2; KEGG: dac:Daci_4279 amidohydrolase 2; amidohydrolase 374072..374944 Alicycliphilus denitrificans BC 10102369 YP_004125012.1 CDS Alide_0347 NC_014910.1 374967 375956 D KEGG: dac:Daci_4278 hypothetical protein; hypothetical protein 374967..375956 Alicycliphilus denitrificans BC 10102370 YP_004125013.1 CDS Alide_0348 NC_014910.1 375989 376675 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4277 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 375989..376675 Alicycliphilus denitrificans BC 10102371 YP_004125014.1 CDS Alide_0349 NC_014910.1 376672 377589 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vap:Vapar_5586 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 376672..377589 Alicycliphilus denitrificans BC 10102372 YP_004125015.1 CDS Alide_0350 NC_014910.1 377614 378603 D KEGG: vap:Vapar_3894 hypothetical protein; hypothetical protein 377614..378603 Alicycliphilus denitrificans BC 10102373 YP_004125016.1 CDS Alide_0351 NC_014910.1 378950 379906 D KEGG: dac:Daci_4274 hypothetical protein; hypothetical protein 378950..379906 Alicycliphilus denitrificans BC 10102374 YP_004125017.1 CDS Alide_0352 NC_014910.1 379912 380787 D PFAM: amidohydrolase 2; KEGG: dac:Daci_4273 amidohydrolase 2; amidohydrolase 379912..380787 Alicycliphilus denitrificans BC 10102375 YP_004125018.1 CDS Alide_0353 NC_014910.1 380800 381717 D PFAM: SMP-30/Gluconolaconase/LRE-like region-containing protein; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain-containing protein; smp-30/gluconolaconase/lre-like region-containing protein 380800..381717 Alicycliphilus denitrificans BC 10102376 YP_004125019.1 CDS Alide_0354 NC_014910.1 381729 382712 R KEGG: rme:Rmet_4433 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein complement(381729..382712) Alicycliphilus denitrificans BC 10102377 YP_004125020.1 CDS Alide_0355 NC_014910.1 382731 383624 R KEGG: vei:Veis_2089 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(382731..383624) Alicycliphilus denitrificans BC 10102378 YP_004125021.1 CDS Alide_0356 NC_014910.1 383647 385098 R PFAM: Aldehyde Dehydrogenase; KEGG: vei:Veis_2088 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase complement(383647..385098) Alicycliphilus denitrificans BC 10102379 YP_004125022.1 CDS Alide_0357 NC_014910.1 385293 386021 R KEGG: rme:Rmet_4432 IclR family transcriptional regulator family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr complement(385293..386021) Alicycliphilus denitrificans BC 10102380 YP_004125023.1 CDS Alide_0358 NC_014910.1 386294 386698 D KEGG: tcu:Tcur_0017 hypothetical protein; hypothetical protein 386294..386698 Alicycliphilus denitrificans BC 10102381 YP_004125024.1 CDS Alide_0359 NC_014910.1 386719 387567 D PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_2534 carboxylesterase protein; alpha/beta hydrolase 386719..387567 Alicycliphilus denitrificans BC 10102382 YP_004125025.1 CDS Alide_0360 NC_014910.1 387622 388776 D PFAM: Extracellular ligand-binding receptor; KEGG: bav:BAV0983 ABC transporter, substrate-binding protein; ABC transporter substrate-binding protein 387622..388776 Alicycliphilus denitrificans BC 10102383 YP_004125026.1 CDS Alide_0361 NC_014910.1 388798 389667 D PFAM: inner-membrane translocator; KEGG: bav:BAV0982 ABC transporter, permease protein; inner-membrane translocator 388798..389667 Alicycliphilus denitrificans BC 10102384 YP_004125027.1 CDS Alide_0362 NC_014910.1 389672 390670 D PFAM: inner-membrane translocator; KEGG: dma:DMR_11370 ABC transporter permease protein; inner-membrane translocator 389672..390670 Alicycliphilus denitrificans BC 10102385 YP_004125028.1 CDS Alide_0363 NC_014910.1 390667 391446 D KEGG: pth:PTH_2348 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 390667..391446 Alicycliphilus denitrificans BC 10102386 YP_004125029.1 CDS Alide_0364 NC_014910.1 391433 392146 D KEGG: oan:Oant_4420 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 391433..392146 Alicycliphilus denitrificans BC 10102387 YP_004125030.1 CDS Alide_0365 NC_014910.1 392149 393171 D PFAM: amidohydrolase 2; KEGG: bbr:BB2353 hypothetical protein; amidohydrolase 392149..393171 Alicycliphilus denitrificans BC 10102388 YP_004125031.1 CDS Alide_0366 NC_014910.1 393156 393887 R KEGG: ajs:Ajs_0229 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(393156..393887) Alicycliphilus denitrificans BC 10102389 YP_004125032.1 CDS Alide_0367 NC_014910.1 393971 395173 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 393971..395173 Alicycliphilus denitrificans BC 10102390 YP_004125033.1 CDS Alide_0368 NC_014910.1 395170 395943 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_0225 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 395170..395943 Alicycliphilus denitrificans BC 10102391 YP_004125034.1 CDS Alide_0369 NC_014910.1 395940 396980 D PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 395940..396980 Alicycliphilus denitrificans BC 10102392 YP_004125035.1 CDS Alide_0370 NC_014910.1 397078 397878 R TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: dia:Dtpsy_0227 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III complement(397078..397878) Alicycliphilus denitrificans BC 10102393 YP_004125036.1 CDS Alide_0371 NC_014910.1 397889 398587 D TIGRFAM: orotate phosphoribosyltransferase; KEGG: dia:Dtpsy_0228 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 397889..398587 Alicycliphilus denitrificans BC 10102394 YP_004125037.1 CDS Alide_0372 NC_014910.1 398608 399312 D KEGG: dia:Dtpsy_0229 hypothetical protein; hypothetical protein 398608..399312 Alicycliphilus denitrificans BC 10102395 YP_004125038.1 CDS Alide_0373 NC_014910.1 399381 400826 R KEGG: dac:Daci_0351 glutamyl-tRNA(Gln) amidotransferase, B subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase; glutamyl-tRNA(gln) amidotransferase, b subunit complement(399381..400826) Alicycliphilus denitrificans BC 10102396 YP_004125039.1 CDS Alide_0374 NC_014910.1 400829 402319 R KEGG: ajs:Ajs_0237 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; glutamyl-tRNA(gln) amidotransferase, a subunit complement(400829..402319) Alicycliphilus denitrificans BC 10102397 YP_004125040.1 CDS Alide_0375 NC_014910.1 402316 402615 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; KEGG: aav:Aave_0293 aspartyl/glutamyl-tRNA amidotransferase subunit C; glutamyl-tRNA(gln) amidotransferase, c subunit complement(402316..402615) Alicycliphilus denitrificans BC 10102398 YP_004125041.1 CDS Alide_0376 NC_014910.1 402821 403864 D KEGG: dia:Dtpsy_0233 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell shape determining protein, mreb/mrl family 402821..403864 Alicycliphilus denitrificans BC 10102399 YP_004125042.1 CDS Alide_0377 NC_014910.1 403894 404811 D KEGG: ajs:Ajs_0240 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; rod shape-determining protein mrec 403894..404811 Alicycliphilus denitrificans BC 10102400 YP_004125043.1 CDS Alide_0378 NC_014910.1 404808 405329 D KEGG: ajs:Ajs_0241 rod shape-determining MreD transmembrane protein; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; rod shape-determining protein mred 404808..405329 Alicycliphilus denitrificans BC 10102401 YP_004125044.1 CDS Alide_0379 NC_014910.1 405346 407289 D TIGRFAM: penicillin-binding protein 2; KEGG: dia:Dtpsy_0236 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 405346..407289 Alicycliphilus denitrificans BC 10102402 YP_004125045.1 CDS Alide_0380 NC_014910.1 407305 408216 R KEGG: dia:Dtpsy_0241 arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; arginase complement(407305..408216) Alicycliphilus denitrificans BC 10102403 YP_004125046.1 CDS Alide_0381 NC_014910.1 408230 408988 R PFAM: protein of unknown function DUF81; KEGG: aav:Aave_0304 hypothetical protein; hypothetical protein complement(408230..408988) Alicycliphilus denitrificans BC 10102404 YP_004125047.1 CDS Alide_0382 NC_014910.1 409235 410917 R KEGG: ajs:Ajs_0249 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; choline dehydrogenase complement(409235..410917) Alicycliphilus denitrificans BC 10102405 YP_004125048.1 CDS Alide_0383 NC_014910.1 411136 412302 D PFAM: protein of unknown function DUF140; KEGG: ajs:Ajs_0250 hypothetical protein; hypothetical protein 411136..412302 Alicycliphilus denitrificans BC 10102406 YP_004125049.1 CDS Alide_0384 NC_014910.1 412305 413108 D KEGG: ajs:Ajs_0251 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 412305..413108 Alicycliphilus denitrificans BC 10102407 YP_004125050.1 CDS Alide_0385 NC_014910.1 413108 414085 D PFAM: Mammalian cell entry related domain protein; KEGG: dia:Dtpsy_0246 mammalian cell entry related domain protein; mammalian cell entry related domain-containing protein 413108..414085 Alicycliphilus denitrificans BC 10102408 YP_004125051.1 CDS Alide_0386 NC_014910.1 414096 414776 D PFAM: protein of unknown function DUF330; KEGG: ajs:Ajs_0253 lipoprotein; hypothetical protein 414096..414776 Alicycliphilus denitrificans BC 10102409 YP_004125052.1 CDS Alide_0388 NC_014910.1 415230 416159 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_6198 LysR family transcriptional regulator; LysR family transcriptional regulator 415230..416159 Alicycliphilus denitrificans BC 10102411 YP_004125053.1 CDS Alide_0389 NC_014910.1 416240 418249 D PFAM: aconitate hydratase domain-containing protein; KEGG: cti:RALTA_B0856 hydrolyase; aconitate hydratase domain-containing protein 416240..418249 Alicycliphilus denitrificans BC 10102412 YP_004125054.1 CDS Alide_0390 NC_014910.1 418287 419276 D KEGG: cti:RALTA_B0858 conserved hypothetical protein; UPF0065; hypothetical protein 418287..419276 Alicycliphilus denitrificans BC 10102413 YP_004125055.1 CDS Alide_0391 NC_014910.1 419285 419818 D KEGG: mmi:MMAR_5403 ribonuclease activity regulator protein RraA; TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; regulator of ribonuclease activity a 419285..419818 Alicycliphilus denitrificans BC 10102414 YP_004125056.1 CDS Alide_0392 NC_014910.1 419769 420404 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dia:Dtpsy_0253 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (marc)-like protein complement(419769..420404) Alicycliphilus denitrificans BC 10102415 YP_004125057.1 CDS Alide_0393 NC_014910.1 420518 421207 D KEGG: dia:Dtpsy_0255 carboxymethylenebutenolidase; carboxymethylenebutenolidase 420518..421207 Alicycliphilus denitrificans BC 10102416 YP_004125058.1 CDS Alide_0394 NC_014910.1 421271 422839 R KEGG: dia:Dtpsy_0256 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter complement(421271..422839) Alicycliphilus denitrificans BC 10102417 YP_004125059.1 CDS Alide_0395 NC_014910.1 422842 424041 R PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_0262 secretion protein HlyD family protein; secretion protein hlyd family protein complement(422842..424041) Alicycliphilus denitrificans BC 10102418 YP_004125060.1 CDS Alide_0396 NC_014910.1 424076 425497 R KEGG: dia:Dtpsy_0258 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family complement(424076..425497) Alicycliphilus denitrificans BC 10102419 YP_004125061.1 CDS Alide_0397 NC_014910.1 425527 426039 R KEGG: ajs:Ajs_0264 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; regulatory protein marr complement(425527..426039) Alicycliphilus denitrificans BC 10102420 YP_004125062.1 CDS Alide_0398 NC_014910.1 426111 427286 R PFAM: Mg2 transporter protein CorA family protein; KEGG: dia:Dtpsy_0260 Mg2 transporter protein CorA family protein; mg2 transporter protein cora family protein complement(426111..427286) Alicycliphilus denitrificans BC 10102421 YP_004125063.1 CDS Alide_0399 NC_014910.1 427326 428354 R KEGG: ajs:Ajs_0266 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; porphobilinogen synthase complement(427326..428354) Alicycliphilus denitrificans BC 10102422 YP_004125064.1 CDS Alide_0400 NC_014910.1 428387 429109 D PFAM: biotin/lipoate A/B protein ligase; KEGG: dia:Dtpsy_0262 biotin/lipoate A/B protein ligase; biotin/lipoate a/b protein ligase 428387..429109 Alicycliphilus denitrificans BC 10102423 YP_004125065.1 CDS Alide_0401 NC_014910.1 429257 429685 D PFAM: Uncharacterised protein family UPF0093; KEGG: dia:Dtpsy_0263 hypothetical protein; hypothetical protein 429257..429685 Alicycliphilus denitrificans BC 10102424 YP_004125066.1 CDS Alide_0402 NC_014910.1 429711 430808 D PFAM: VanZ family protein; KEGG: ajs:Ajs_0269 VanZ family protein; vanz family protein 429711..430808 Alicycliphilus denitrificans BC 10102425 YP_004125067.1 CDS Alide_0403 NC_014910.1 430818 431159 D KEGG: dia:Dtpsy_0265 ferredoxin-like protein; ferredoxin-like protein 430818..431159 Alicycliphilus denitrificans BC 10102426 YP_004125068.1 CDS Alide_0404 NC_014910.1 431243 431878 D KEGG: dia:Dtpsy_0266 transmembrane protein; transmembrane protein 431243..431878 Alicycliphilus denitrificans BC 10102427 YP_004125069.1 CDS Alide_0405 NC_014910.1 431980 433143 D KEGG: ajs:Ajs_0272 penicillin-binding protein 6; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; beta-lactamase 431980..433143 Alicycliphilus denitrificans BC 10102428 YP_004125070.1 CDS Alide_0406 NC_014910.1 433245 433622 D KEGG: dia:Dtpsy_0268 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; 30S ribosomal protein S12 433245..433622 Alicycliphilus denitrificans BC 10102429 YP_004125071.1 CDS Alide_0407 NC_014910.1 433786 434259 D KEGG: dia:Dtpsy_0269 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; 30S ribosomal protein S7 433786..434259 Alicycliphilus denitrificans BC 10102430 YP_004125072.1 CDS Alide_0408 NC_014910.1 434346 436454 D KEGG: ajs:Ajs_0275 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; translation elongation factor g 434346..436454 Alicycliphilus denitrificans BC 10102431 YP_004125073.1 CDS Alide_0409 NC_014910.1 436688 437878 D KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; translation elongation factor tu 436688..437878 Alicycliphilus denitrificans BC 10102432 YP_004125074.1 CDS Alide_0410 NC_014910.1 437906 438217 D KEGG: vei:Veis_1263 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; 30S ribosomal protein S10 437906..438217 Alicycliphilus denitrificans BC 10102433 YP_004125075.1 CDS Alide_0411 NC_014910.1 438434 439108 D KEGG: dia:Dtpsy_0273 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; 50S ribosomal protein L3 438434..439108 Alicycliphilus denitrificans BC 10102434 YP_004125076.1 CDS Alide_0412 NC_014910.1 439108 439728 D PFAM: ribosomal protein L4/L1e; KEGG: dia:Dtpsy_0274 50S ribosomal protein L4; 50S ribosomal protein L4/l1e 439108..439728 Alicycliphilus denitrificans BC 10102435 YP_004125077.1 CDS Alide_0413 NC_014910.1 439725 440039 D PFAM: Ribosomal protein L25/L23; KEGG: dia:Dtpsy_0275 50S ribosomal protein L23; 50S ribosomal protein L25/l23 439725..440039 Alicycliphilus denitrificans BC 10102436 YP_004125078.1 CDS Alide_0414 NC_014910.1 440042 440866 D KEGG: dia:Dtpsy_0276 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; 50S ribosomal protein L2 440042..440866 Alicycliphilus denitrificans BC 10102437 YP_004125079.1 CDS Alide_0415 NC_014910.1 440877 441152 D KEGG: dac:Daci_0395 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; 30S ribosomal protein S19 440877..441152 Alicycliphilus denitrificans BC 10102438 YP_004125080.1 CDS Alide_0416 NC_014910.1 441162 441494 D KEGG: dac:Daci_0396 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; 50S ribosomal protein L22 441162..441494 Alicycliphilus denitrificans BC 10102439 YP_004125081.1 CDS Alide_0417 NC_014910.1 441512 442384 D TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: aav:Aave_0344 30S ribosomal protein S3; SMART: KH domain protein; 30S ribosomal protein S3 441512..442384 Alicycliphilus denitrificans BC 10102440 YP_004125082.1 CDS Alide_0418 NC_014910.1 442387 442803 D KEGG: dia:Dtpsy_0280 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; 50S ribosomal protein L16 442387..442803 Alicycliphilus denitrificans BC 10102441 YP_004125083.1 CDS Alide_0419 NC_014910.1 442815 443012 D KEGG: dia:Dtpsy_0281 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; 50S ribosomal protein L29 442815..443012 Alicycliphilus denitrificans BC 10102442 YP_004125084.1 CDS Alide_0420 NC_014910.1 443026 443295 D KEGG: dia:Dtpsy_0282 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17; 30S ribosomal protein S17 443026..443295 Alicycliphilus denitrificans BC 10102443 YP_004125085.1 CDS Alide_0421 NC_014910.1 443375 443881 D PFAM: Redoxin domain protein; KEGG: ajs:Ajs_0288 redoxin domain-containing protein; redoxin domain-containing protein 443375..443881 Alicycliphilus denitrificans BC 10102444 YP_004125086.1 CDS Alide_0422 NC_014910.1 443987 444481 R PFAM: GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_0284 GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase complement(443987..444481) Alicycliphilus denitrificans BC 10102445 YP_004125087.1 CDS Alide_0423 NC_014910.1 444550 445278 R KEGG: dia:Dtpsy_0285 cytochrome b561; cytochrome b561 complement(444550..445278) Alicycliphilus denitrificans BC 10102446 YP_004125088.1 CDS Alide_0424 NC_014910.1 445527 446030 R PFAM: Redoxin domain protein; KEGG: dia:Dtpsy_0287 redoxin domain protein; redoxin domain-containing protein complement(445527..446030) Alicycliphilus denitrificans BC 10102447 YP_004125089.1 CDS Alide_0425 NC_014910.1 446103 446753 D KEGG: dia:Dtpsy_0288 hypothetical protein; hypothetical protein 446103..446753 Alicycliphilus denitrificans BC 10102448 YP_004125090.1 CDS Alide_0426 NC_014910.1 446775 447185 D PFAM: PTS system fructose subfamily IIA component; KEGG: ajs:Ajs_0295 PTS system fructose subfamily IIA component; pts system fructose subfamily iia component 446775..447185 Alicycliphilus denitrificans BC 10102449 YP_004125091.1 CDS Alide_0427 NC_014910.1 447182 447451 D KEGG: dia:Dtpsy_0291 phosphocarrier, HPr family; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; phosphocarrier, hpr family 447182..447451 Alicycliphilus denitrificans BC 10102450 YP_004125092.1 CDS Alide_0428 NC_014910.1 447470 449236 D KEGG: ajs:Ajs_0297 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; phosphoenolpyruvate-protein phosphotransferase 447470..449236 Alicycliphilus denitrificans BC 10102451 YP_004125093.1 CDS Alide_0429 NC_014910.1 449303 450283 R SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lipoic acid synthetase; KEGG: dia:Dtpsy_0293 lipoyl synthase; PFAM: Radical SAM domain protein; lipoic acid synthetase complement(449303..450283) Alicycliphilus denitrificans BC 10102452 YP_004125094.1 CDS Alide_0430 NC_014910.1 450301 450993 R TIGRFAM: lipoate-protein ligase B; KEGG: ajs:Ajs_0299 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B complement(450301..450993) Alicycliphilus denitrificans BC 10102453 YP_004125095.1 CDS Alide_0431 NC_014910.1 451005 451301 R PFAM: protein of unknown function DUF493; KEGG: dia:Dtpsy_0295 protein of unknown function DUF493; hypothetical protein complement(451005..451301) Alicycliphilus denitrificans BC 10102454 YP_004125096.1 CDS Alide_0432 NC_014910.1 451585 451977 D PFAM: ATP synthase I chain; KEGG: aav:Aave_0365 ATP synthase protein I; ATP synthase subunit I 451585..451977 Alicycliphilus denitrificans BC 10102455 YP_004125097.1 CDS Alide_0433 NC_014910.1 452000 452863 D KEGG: dia:Dtpsy_0297 F0F1 ATP synthase subunit A; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; ATP synthase F0 subunit A 452000..452863 Alicycliphilus denitrificans BC 10102456 YP_004125098.1 CDS Alide_0434 NC_014910.1 452915 453163 D KEGG: dac:Daci_0415 F0F1 ATP synthase subunit C; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; ATP synthase F0 subunit C 452915..453163 Alicycliphilus denitrificans BC 10102457 YP_004125099.1 CDS Alide_0435 NC_014910.1 453202 453672 D KEGG: dia:Dtpsy_0299 F0F1 ATP synthase subunit B; TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; ATP synthase F0 subunit B 453202..453672 Alicycliphilus denitrificans BC 10102458 YP_004125100.1 CDS Alide_0436 NC_014910.1 453691 454233 D KEGG: dia:Dtpsy_0300 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; ATP synthase F1 subunit delta 453691..454233 Alicycliphilus denitrificans BC 10102459 YP_004125101.1 CDS Alide_0437 NC_014910.1 454279 455838 D KEGG: aav:Aave_0370 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 subunit alpha 454279..455838 Alicycliphilus denitrificans BC 10102460 YP_004125102.1 CDS Alide_0438 NC_014910.1 455857 456723 D KEGG: dia:Dtpsy_0302 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma 455857..456723 Alicycliphilus denitrificans BC 10102461 YP_004125103.1 CDS Alide_0439 NC_014910.1 456752 458161 D TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: dia:Dtpsy_0303 F0F1 ATP synthase subunit beta; SMART: AAA ATPase; ATP synthase F1 subunit beta 456752..458161 Alicycliphilus denitrificans BC 10102462 YP_004125104.1 CDS Alide_0440 NC_014910.1 458236 458652 D KEGG: dia:Dtpsy_0304 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; ATP synthase F1 subunit epsilon 458236..458652 Alicycliphilus denitrificans BC 10102463 YP_004125105.1 CDS Alide_0444 NC_014910.1 460827 461639 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_2574 transcriptional regulator, LysR family; LysR family transcriptional regulator 460827..461639 Alicycliphilus denitrificans BC 10102467 YP_004125106.1 CDS Alide_0445 NC_014910.1 461645 462178 R PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein; hypothetical protein complement(461645..462178) Alicycliphilus denitrificans BC 10102468 YP_004125107.1 CDS Alide_0446 NC_014910.1 462192 463079 R PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein; hypothetical protein complement(462192..463079) Alicycliphilus denitrificans BC 10102469 YP_004125108.1 CDS Alide_0447 NC_014910.1 463083 463688 R PFAM: LemA family protein; KEGG: aav:Aave_0381 LemA family protein; lema family protein complement(463083..463688) Alicycliphilus denitrificans BC 10102470 YP_004125109.1 CDS Alide_0448 NC_014910.1 463809 464276 D KEGG: dia:Dtpsy_0312 hypothetical protein; hypothetical protein 463809..464276 Alicycliphilus denitrificans BC 10102471 YP_004125110.1 CDS Alide_0449 NC_014910.1 464322 464858 D KEGG: ajs:Ajs_0319 hypothetical protein; hypothetical protein 464322..464858 Alicycliphilus denitrificans BC 10102472 YP_004125111.1 CDS Alide_0450 NC_014910.1 465014 465850 R PFAM: cytochrome c class I; KEGG: aav:Aave_0385 cytochrome c, class I; cytochrome c class i complement(465014..465850) Alicycliphilus denitrificans BC 10102473 YP_004125112.1 CDS Alide_0451 NC_014910.1 465980 467425 R KEGG: dia:Dtpsy_0316 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family complement(465980..467425) Alicycliphilus denitrificans BC 10102474 YP_004125113.1 CDS Alide_0452 NC_014910.1 467450 470605 R KEGG: dia:Dtpsy_0317 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 family transporter complement(467450..470605) Alicycliphilus denitrificans BC 10102475 YP_004125114.1 CDS Alide_0453 NC_014910.1 470624 471904 R KEGG: dia:Dtpsy_0318 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit complement(470624..471904) Alicycliphilus denitrificans BC 10102476 YP_004125115.1 CDS Alide_0454 NC_014910.1 472096 472716 D PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain-containing protein; KEGG: dia:Dtpsy_0319 transcriptional regulator, TetR family; regulatory protein tetr 472096..472716 Alicycliphilus denitrificans BC 10102477 YP_004125116.1 CDS Alide_0455 NC_014910.1 473372 474562 D KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; translation elongation factor tu 473372..474562 Alicycliphilus denitrificans BC 10102482 YP_004125117.1 CDS Alide_0456 NC_014910.1 474739 475122 D KEGG: ajs:Ajs_3903 preprotein translocase subunit SecE; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; preprotein translocase subunit SecE 474739..475122 Alicycliphilus denitrificans BC 10102484 YP_004125118.1 CDS Alide_0457 NC_014910.1 475122 475712 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: dia:Dtpsy_3251 NusG antitermination factor; SMART: NGN domain-containing protein; KOW domain protein; transcription termination/antitermination factor nusg 475122..475712 Alicycliphilus denitrificans BC 10102485 YP_004125119.1 CDS Alide_0458 NC_014910.1 475844 476275 D TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: aav:Aave_4535 50S ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 475844..476275 Alicycliphilus denitrificans BC 10102486 YP_004125120.1 CDS Alide_0459 NC_014910.1 476276 476971 D KEGG: dia:Dtpsy_3249 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; 50S ribosomal protein L1 476276..476971 Alicycliphilus denitrificans BC 10102487 YP_004125121.1 CDS Alide_0460 NC_014910.1 477204 477710 D PFAM: ribosomal protein L10; KEGG: aav:Aave_4533 50S ribosomal protein L10; 50S ribosomal protein L10 477204..477710 Alicycliphilus denitrificans BC 10102488 YP_004125122.1 CDS Alide_0461 NC_014910.1 477765 478145 D KEGG: dia:Dtpsy_3247 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 ; ribosomal protein 60S; 50S ribosomal protein L7/l12 477765..478145 Alicycliphilus denitrificans BC 10102489 YP_004125123.1 CDS Alide_0462 NC_014910.1 478420 482544 D KEGG: aav:Aave_4531 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; DNA-directed RNA polymerase subunit beta 478420..482544 Alicycliphilus denitrificans BC 10102490 YP_004125124.1 CDS Alide_0463 NC_014910.1 482565 486794 D TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: dia:Dtpsy_3245 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 482565..486794 Alicycliphilus denitrificans BC 10102491 YP_004125125.1 CDS Alide_0464 NC_014910.1 486914 487480 D KEGG: dia:Dtpsy_3244 hypothetical protein; hypothetical protein 486914..487480 Alicycliphilus denitrificans BC 10102492 YP_004125126.1 CDS Alide_0465 NC_014910.1 487477 488844 D KEGG: dia:Dtpsy_3243 sun protein; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; sun protein 487477..488844 Alicycliphilus denitrificans BC 10102493 YP_004125127.1 CDS Alide_0466 NC_014910.1 488888 489469 D KEGG: ajs:Ajs_3893 hypothetical protein; hypothetical protein 488888..489469 Alicycliphilus denitrificans BC 10102494 YP_004125128.1 CDS Alide_0467 NC_014910.1 489466 491754 D KEGG: ajs:Ajs_3892 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; ATP-binding domain-containing protein 489466..491754 Alicycliphilus denitrificans BC 10102495 YP_004125129.1 CDS Alide_0468 NC_014910.1 491794 492489 D KEGG: dia:Dtpsy_3240 two component transcriptional regulator, fis family; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; response regulator receiver 491794..492489 Alicycliphilus denitrificans BC 10102496 YP_004125130.1 CDS Alide_0469 NC_014910.1 492890 493840 R KEGG: dia:Dtpsy_3238 hypothetical protein; hypothetical protein complement(492890..493840) Alicycliphilus denitrificans BC 10102498 YP_004125131.1 CDS Alide_0470 NC_014910.1 493844 495079 R KEGG: dia:Dtpsy_3237 hypothetical protein; hypothetical protein complement(493844..495079) Alicycliphilus denitrificans BC 10102499 YP_004125132.1 CDS Alide_0471 NC_014910.1 495325 495654 D KEGG: dia:Dtpsy_3236 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 495325..495654 Alicycliphilus denitrificans BC 10102500 YP_004125133.1 CDS Alide_0472 NC_014910.1 495668 496597 D PFAM: protein of unknown function DUF955; KEGG: dia:Dtpsy_3235 protein of unknown function DUF955; hypothetical protein 495668..496597 Alicycliphilus denitrificans BC 10102501 YP_004125134.1 CDS Alide_0473 NC_014910.1 496744 498270 D PFAM: Integrase catalytic region; regulatory protein MerR; KEGG: ctt:CtCNB1_2459 IstA; integrase catalytic region protein 496744..498270 Alicycliphilus denitrificans BC 10102502 YP_004125135.1 CDS Alide_0474 NC_014910.1 498260 499063 D KEGG: ctt:CtCNB1_3734 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; istb domain-containing protein ATP-binding protein 498260..499063 Alicycliphilus denitrificans BC 10102503 YP_004125136.1 CDS Alide_0475 NC_014910.1 499095 499874 D KEGG: bbr:BB2493 phage-related DNA-binding protein; manually curated; PFAM: protein of unknown function DUF955; hypothetical protein 499095..499874 Alicycliphilus denitrificans BC 10102504 YP_004125137.1 CDS Alide_0476 NC_014910.1 499891 500139 D KEGG: ppg:PputGB1_4812 hypothetical protein; hypothetical protein 499891..500139 Alicycliphilus denitrificans BC 10102505 YP_004125138.1 CDS Alide_0477 NC_014910.1 500160 500621 D KEGG: sbn:Sbal195_1558 hypothetical protein; hypothetical protein 500160..500621 Alicycliphilus denitrificans BC 10102506 YP_004125139.1 CDS Alide_0478 NC_014910.1 500766 502439 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bpy:Bphyt_3723 CMP/dCMP deaminase zinc-binding; cmp/dcmp deaminase zinc-binding protein 500766..502439 Alicycliphilus denitrificans BC 10102507 YP_004125140.1 CDS Alide_0481 NC_014910.1 503904 505244 R TIGRFAM: nucleotide sugar dehydrogenase; KEGG: dia:Dtpsy_0400 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(503904..505244) Alicycliphilus denitrificans BC 10102510 YP_004125141.1 CDS Alide_0482 NC_014910.1 505241 506251 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: dia:Dtpsy_0401 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(505241..506251) Alicycliphilus denitrificans BC 10102511 YP_004125142.1 CDS Alide_0483 NC_014910.1 506248 507765 R KEGG: dia:Dtpsy_0402 glycosyltransferase; glycosyltransferase complement(506248..507765) Alicycliphilus denitrificans BC 10102512 YP_004125143.1 CDS Alide_0484 NC_014910.1 507869 508900 D PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0411 glycosyl transferase family protein; family 2 glycosyl transferase 507869..508900 Alicycliphilus denitrificans BC 10102513 YP_004125144.1 CDS Alide_0485 NC_014910.1 508897 509826 D KEGG: ajs:Ajs_0412 hypothetical protein; hypothetical protein 508897..509826 Alicycliphilus denitrificans BC 10102514 YP_004125145.1 CDS Alide_0486 NC_014910.1 510032 510946 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dia:Dtpsy_0405 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase complement(510032..510946) Alicycliphilus denitrificans BC 10102515 YP_004125146.1 CDS Alide_0487 NC_014910.1 510970 511368 D PFAM: Uncharacterised protein family UPF0102; KEGG: ajs:Ajs_0414 hypothetical protein; hypothetical protein 510970..511368 Alicycliphilus denitrificans BC 10102516 YP_004125147.1 CDS Alide_0488 NC_014910.1 511429 512031 D KEGG: dia:Dtpsy_0407 phosphoheptose isomerase; phosphoheptose isomerase 511429..512031 Alicycliphilus denitrificans BC 10102517 YP_004125148.1 CDS Alide_0489 NC_014910.1 512028 512693 D KEGG: ajs:Ajs_0416 transport-associated; PFAM: transport-associated; SMART: Transport-associated and nodulation region; transport-associated protein 512028..512693 Alicycliphilus denitrificans BC 10102518 YP_004125149.1 CDS Alide_0490 NC_014910.1 512722 513654 R KEGG: dia:Dtpsy_0409 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase complement(512722..513654) Alicycliphilus denitrificans BC 10102519 YP_004125150.1 CDS Alide_0491 NC_014910.1 513735 514871 R KEGG: ajs:Ajs_0418 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; twitching motility protein complement(513735..514871) Alicycliphilus denitrificans BC 10102520 YP_004125151.1 CDS Alide_0492 NC_014910.1 514897 515526 R KEGG: dia:Dtpsy_0411 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; cyclic nucleotide-binding protein complement(514897..515526) Alicycliphilus denitrificans BC 10102521 YP_004125152.1 CDS Alide_0493 NC_014910.1 515591 516634 R KEGG: aav:Aave_0637 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; twitching motility protein complement(515591..516634) Alicycliphilus denitrificans BC 10102522 YP_004125153.1 CDS Alide_0494 NC_014910.1 516674 517396 D PFAM: alanine racemase domain protein; KEGG: dac:Daci_1069 alanine racemase domain-containing protein; alanine racemase 516674..517396 Alicycliphilus denitrificans BC 10102523 YP_004125154.1 CDS Alide_0495 NC_014910.1 517437 518567 D PFAM: aminotransferase class V; KEGG: dia:Dtpsy_0414 aminotransferase class V; class V aminotransferase 517437..518567 Alicycliphilus denitrificans BC 10102524 YP_004125155.1 CDS Alide_0496 NC_014910.1 518628 519050 R manually curated; KEGG: aav:Aave_0642 hypothetical protein; hypothetical protein complement(518628..519050) Alicycliphilus denitrificans BC 10102525 YP_004125156.1 CDS Alide_0497 NC_014910.1 519235 520536 D PFAM: protein of unknown function DUF445; KEGG: ajs:Ajs_0423 hypothetical protein; hypothetical protein 519235..520536 Alicycliphilus denitrificans BC 10102526 YP_004125157.1 CDS Alide_0498 NC_014910.1 520594 522087 R PFAM: FAD linked oxidase domain protein; KEGG: dia:Dtpsy_0417 FAD linked oxidase domain protein; fad linked oxidase domain-containing protein complement(520594..522087) Alicycliphilus denitrificans BC 10102527 YP_004125158.1 CDS Alide_0499 NC_014910.1 522154 523050 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0418 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(522154..523050) Alicycliphilus denitrificans BC 10102528 YP_004125159.1 CDS Alide_0500 NC_014910.1 523050 523898 R KEGG: dia:Dtpsy_0419 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; formyltetrahydrofolate deformylase complement(523050..523898) Alicycliphilus denitrificans BC 10102529 YP_004125160.1 CDS Alide_0501 NC_014910.1 523944 526610 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: ctt:CtCNB1_4372 diguanylate cyclase/phosphodiesterase with; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase 523944..526610 Alicycliphilus denitrificans BC 10102530 YP_004125161.1 CDS Alide_0502 NC_014910.1 526611 527471 R PFAM: protein of unknown function DUF399; KEGG: ajs:Ajs_0430 hypothetical protein; hypothetical protein complement(526611..527471) Alicycliphilus denitrificans BC 10102531 YP_004125162.1 CDS Alide_0503 NC_014910.1 527738 530173 D KEGG: ajs:Ajs_0431 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase 527738..530173 Alicycliphilus denitrificans BC 10102532 YP_004125163.1 CDS Alide_0504 NC_014910.1 530352 532268 D KEGG: dia:Dtpsy_0423 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; ATP-binding domain-containing protein 530352..532268 Alicycliphilus denitrificans BC 10102533 YP_004125164.1 CDS Alide_0505 NC_014910.1 532265 532939 D KEGG: dia:Dtpsy_0424 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; response regulator receiver 532265..532939 Alicycliphilus denitrificans BC 10102534 YP_004125165.1 CDS Alide_0506 NC_014910.1 533168 534463 D PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0434 major facilitator superfamily transporter; major facilitator superfamily protein 533168..534463 Alicycliphilus denitrificans BC 10102535 YP_004125166.1 CDS Alide_0507 NC_014910.1 534482 535927 D KEGG: dia:Dtpsy_0426 nitrite transporter; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; nitrite transporter 534482..535927 Alicycliphilus denitrificans BC 10102536 YP_004125167.1 CDS Alide_0508 NC_014910.1 535964 539758 D KEGG: ajs:Ajs_0436 respiratory nitrate reductase alpha subunit apoprotein; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 535964..539758 Alicycliphilus denitrificans BC 10102537 YP_004125168.1 CDS Alide_0509 NC_014910.1 539777 541300 D TIGRFAM: nitrate reductase, beta subunit; KEGG: dia:Dtpsy_0428 nitrate reductase, beta subunit; nitrate reductase subunit beta 539777..541300 Alicycliphilus denitrificans BC 10102538 YP_004125169.1 CDS Alide_0510 NC_014910.1 541312 542013 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; KEGG: dia:Dtpsy_0429 nitrate reductase molybdenum cofactor assembly chaperone; PFAM: TorD-like chaperone; nitrate reductase molybdenum cofactor assembly chaperone 541312..542013 Alicycliphilus denitrificans BC 10102539 YP_004125170.1 CDS Alide_0511 NC_014910.1 542010 542738 D TIGRFAM: respiratory nitrate reductase, gamma subunit; KEGG: dia:Dtpsy_0430 respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 542010..542738 Alicycliphilus denitrificans BC 10102540 YP_004125171.1 CDS Alide_0512 NC_014910.1 542866 543693 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dia:Dtpsy_0431 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 542866..543693 Alicycliphilus denitrificans BC 10102541 YP_004125172.1 CDS Alide_0513 NC_014910.1 543728 544405 D KEGG: dia:Dtpsy_0432 carbonate dehydratase; PFAM: carbonic anhydrase; carbonate dehydratase 543728..544405 Alicycliphilus denitrificans BC 10102542 YP_004125173.1 CDS Alide_0514 NC_014910.1 544405 545055 D PFAM: nitroreductase; KEGG: dia:Dtpsy_0434 nitroreductase; nitroreductase 544405..545055 Alicycliphilus denitrificans BC 10102543 YP_004125174.1 CDS Alide_0515 NC_014910.1 545052 545471 D KEGG: dia:Dtpsy_0435 hypothetical protein; hypothetical protein 545052..545471 Alicycliphilus denitrificans BC 10102544 YP_004125175.1 CDS Alide_0516 NC_014910.1 545525 546073 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dia:Dtpsy_0436 hemerythrin HHE cation binding domain protein; hemerythrin hhe cation binding domain-containing protein 545525..546073 Alicycliphilus denitrificans BC 10102545 YP_004125176.1 CDS Alide_0517 NC_014910.1 546263 546550 R KEGG: ajs:Ajs_0446 hypothetical protein; hypothetical protein complement(546263..546550) Alicycliphilus denitrificans BC 10102546 YP_004125177.1 CDS Alide_0518 NC_014910.1 546684 547835 R KEGG: dia:Dtpsy_0438 hypothetical protein; hypothetical protein complement(546684..547835) Alicycliphilus denitrificans BC 10102547 YP_004125178.1 CDS Alide_0519 NC_014910.1 548017 549006 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ajs:Ajs_0449 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (faa) hydrolase 548017..549006 Alicycliphilus denitrificans BC 10102548 YP_004125179.1 CDS Alide_0520 NC_014910.1 549163 551367 D KEGG: cph:Cpha266_1840 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; tetratricopeptide tpr_1 repeat-containing protein 549163..551367 Alicycliphilus denitrificans BC 10102549 YP_004125180.1 CDS Alide_0521 NC_014910.1 551428 553503 R PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: ajs:Ajs_0451 molybdopterin oxidoreductase; molybdopterin dinucleotide-binding region protein complement(551428..553503) Alicycliphilus denitrificans BC 10102550 YP_004125181.1 CDS Alide_0522 NC_014910.1 553624 554655 R KEGG: vei:Veis_1579 hypothetical protein; hypothetical protein complement(553624..554655) Alicycliphilus denitrificans BC 10102551 YP_004125182.1 CDS Alide_0523 NC_014910.1 554696 555604 R KEGG: cti:RALTA_B1739 citrate lyase/aldolase; PFAM: HpcH/HpaI aldolase; citryl-CoA lyase complement(554696..555604) Alicycliphilus denitrificans BC 10102552 YP_004125183.1 CDS Alide_0524 NC_014910.1 555620 556852 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_1581 formyl-CoA transferase; l-carnitine dehydratase/bile acid-inducible protein f complement(555620..556852) Alicycliphilus denitrificans BC 10102553 YP_004125184.1 CDS Alide_0525 NC_014910.1 556849 557352 R KEGG: cti:RALTA_B1741 hypothetical protein; hypothetical protein complement(556849..557352) Alicycliphilus denitrificans BC 10102554 YP_004125185.1 CDS Alide_0526 NC_014910.1 557349 558599 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: cti:RALTA_B1742 acyl CoA dehydrogenase oxidoreductase protein; acyl-CoA dehydrogenase complement(557349..558599) Alicycliphilus denitrificans BC 10102555 YP_004125186.1 CDS Alide_0527 NC_014910.1 558604 559107 R PFAM: MaoC domain protein dehydratase; KEGG: cti:RALTA_B1743 hypothetical protein; MaoC domain-containing protein complement(558604..559107) Alicycliphilus denitrificans BC 10102556 YP_004125187.1 CDS Alide_0528 NC_014910.1 559104 560483 R PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_1585 MmgE/PrpD family protein; mmge/prpd family protein complement(559104..560483) Alicycliphilus denitrificans BC 10102557 YP_004125188.1 CDS Alide_0529 NC_014910.1 560689 561564 D KEGG: xau:Xaut_1974 citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; citryl-CoA lyase 560689..561564 Alicycliphilus denitrificans BC 10102558 YP_004125189.1 CDS Alide_0530 NC_014910.1 561571 562329 D PFAM: regulatory protein IclR; KEGG: rcu:RCOM_0002820 Transcriptional regulator kdgR, putative; regulatory protein iclr 561571..562329 Alicycliphilus denitrificans BC 10102559 YP_004125190.1 CDS Alide_0531 NC_014910.1 562431 563636 D TIGRFAM: amidohydrolase; KEGG: dia:Dtpsy_0444 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 562431..563636 Alicycliphilus denitrificans BC 10102560 YP_004125191.1 CDS Alide_0532 NC_014910.1 563705 563962 D PFAM: acyl-coA-binding protein ACBP; KEGG: dia:Dtpsy_0446 acyl-coA-binding protein ACBP; acyl-CoA-binding protein 563705..563962 Alicycliphilus denitrificans BC 10102561 YP_004125192.1 CDS Alide_0533 NC_014910.1 563965 565068 R PFAM: aminopeptidase; KEGG: dia:Dtpsy_0447 zinc protease protein; aminopeptidase complement(563965..565068) Alicycliphilus denitrificans BC 10102562 YP_004125193.1 CDS Alide_0534 NC_014910.1 565075 565734 D KEGG: ajs:Ajs_0457 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase i 565075..565734 Alicycliphilus denitrificans BC 10102563 YP_004125194.1 CDS Alide_0535 NC_014910.1 565868 566029 R KEGG: dia:Dtpsy_0450 hypothetical protein; hypothetical protein complement(565868..566029) Alicycliphilus denitrificans BC 10102564 YP_004125195.1 CDS Alide_0536 NC_014910.1 566310 567608 D KEGG: ajs:Ajs_0460 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 566310..567608 Alicycliphilus denitrificans BC 10102565 YP_004125196.1 CDS Alide_0537 NC_014910.1 567630 567950 D PFAM: Domain of unknown function DUF1840; KEGG: dia:Dtpsy_0452 hypothetical protein; hypothetical protein 567630..567950 Alicycliphilus denitrificans BC 10102566 YP_004125197.1 CDS Alide_0538 NC_014910.1 567973 568989 R KEGG: ajs:Ajs_0462 hypothetical protein; hypothetical protein complement(567973..568989) Alicycliphilus denitrificans BC 10102567 YP_004125198.1 CDS Alide_0539 NC_014910.1 569132 570121 R KEGG: vap:Vapar_5015 hypothetical protein; hypothetical protein complement(569132..570121) Alicycliphilus denitrificans BC 10102568 YP_004125199.1 CDS Alide_0540 NC_014910.1 570248 571495 R PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_0455 phenylacetate-CoA ligase; AMP-dependent synthetase/ligase complement(570248..571495) Alicycliphilus denitrificans BC 10102569 YP_004125200.1 CDS Alide_0541 NC_014910.1 571586 572428 R KEGG: ctt:CtCNB1_4329 high-affinity branched-chain amino acid transport ATP-binding protein LivF; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(571586..572428) Alicycliphilus denitrificans BC 10102570 YP_004125201.1 CDS Alide_0542 NC_014910.1 572568 573881 R KEGG: dac:Daci_1155 hypothetical protein; hypothetical protein complement(572568..573881) Alicycliphilus denitrificans BC 10102571 YP_004125202.1 CDS Alide_0543 NC_014910.1 573940 575004 R PFAM: inner-membrane translocator; KEGG: ctt:CtCNB1_4327 membrane protein; inner-membrane translocator complement(573940..575004) Alicycliphilus denitrificans BC 10102572 YP_004125203.1 CDS Alide_0544 NC_014910.1 575026 575955 R PFAM: inner-membrane translocator; KEGG: ctt:CtCNB1_4326 high-affinity branched-chain amino acidtransport system permease protein LivH; inner-membrane translocator complement(575026..575955) Alicycliphilus denitrificans BC 10102573 YP_004125204.1 CDS Alide_0545 NC_014910.1 575976 576761 R KEGG: dac:Daci_1158 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(575976..576761) Alicycliphilus denitrificans BC 10102574 YP_004125205.1 CDS Alide_0546 NC_014910.1 576780 578711 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(576780..578711) Alicycliphilus denitrificans BC 10102575 YP_004125206.1 CDS Alide_0547 NC_014910.1 578932 580623 D KEGG: dia:Dtpsy_0462 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; peptidoglycan-binding domain-containing protein 578932..580623 Alicycliphilus denitrificans BC 10102576 YP_004125207.1 CDS Alide_0548 NC_014910.1 580628 581332 D KEGG: ajs:Ajs_0472 hypothetical protein; hypothetical protein 580628..581332 Alicycliphilus denitrificans BC 10102577 YP_004125208.1 CDS Alide_0549 NC_014910.1 581462 582253 D KEGG: ajs:Ajs_0473 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein 581462..582253 Alicycliphilus denitrificans BC 10102578 YP_004125209.1 CDS Alide_0550 NC_014910.1 582292 583212 D KEGG: ajs:Ajs_0474 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; RNA-binding s4 domain-containing protein 582292..583212 Alicycliphilus denitrificans BC 10102579 YP_004125210.1 CDS Alide_0551 NC_014910.1 583310 585271 D KEGG: dia:Dtpsy_0466 heat shock protein 90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; heat shock protein hsp90-like protein 583310..585271 Alicycliphilus denitrificans BC 10102580 YP_004125211.1 CDS Alide_0552 NC_014910.1 585304 585789 D KEGG: dac:Daci_1191 hypothetical protein; hypothetical protein 585304..585789 Alicycliphilus denitrificans BC 10102581 YP_004125212.1 CDS Alide_0553 NC_014910.1 585882 586862 D KEGG: dia:Dtpsy_0467 hypothetical protein; hypothetical protein 585882..586862 Alicycliphilus denitrificans BC 10102582 YP_004125213.1 CDS Alide_0554 NC_014910.1 586863 587906 R PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0479 serine/threonine protein kinase; aminoglycoside phosphotransferase complement(586863..587906) Alicycliphilus denitrificans BC 10102583 YP_004125214.1 CDS Alide_0555 NC_014910.1 587929 589377 R KEGG: dia:Dtpsy_0471 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; UspA domain-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; serine/threonine-protein kinase-like domain-containing protein complement(587929..589377) Alicycliphilus denitrificans BC 10102584 YP_004125215.1 CDS Alide_0556 NC_014910.1 589381 590139 R PFAM: metallophosphoesterase; KEGG: dia:Dtpsy_0472 metallophosphoesterase; metallophosphoesterase complement(589381..590139) Alicycliphilus denitrificans BC 10102585 YP_004125216.1 CDS Alide_0557 NC_014910.1 590369 591565 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0058 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 590369..591565 Alicycliphilus denitrificans BC 10102586 YP_004125217.1 CDS Alide_0558 NC_014910.1 591581 592060 D KEGG: ctt:CtCNB1_2196 hypothetical protein; hypothetical protein 591581..592060 Alicycliphilus denitrificans BC 10102587 YP_004125218.1 CDS Alide_0559 NC_014910.1 592113 593111 D KEGG: ctt:CtCNB1_2197 TctC; ABC transporter substrate-binding protein 592113..593111 Alicycliphilus denitrificans BC 10102588 YP_004125219.1 CDS Alide_0560 NC_014910.1 593158 594006 R PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_0476 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase complement(593158..594006) Alicycliphilus denitrificans BC 10102589 YP_004125220.1 CDS Alide_0561 NC_014910.1 594106 595698 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dia:Dtpsy_0477 choline dehydrogenase; glucose-methanol-choline oxidoreductase 594106..595698 Alicycliphilus denitrificans BC 10102590 YP_004125221.1 CDS Alide_0564 NC_014910.1 596410 597228 R KEGG: ajs:Ajs_3712 ABC transporter; TIGRFAM: ABC transporter; PFAM: ABC transporter; ABC transporter complement(596410..597228) Alicycliphilus denitrificans BC 10102593 YP_004125222.1 CDS Alide_0565 NC_014910.1 597230 598171 R KEGG: ajs:Ajs_3711 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(597230..598171) Alicycliphilus denitrificans BC 10102594 YP_004125223.1 CDS Alide_0566 NC_014910.1 598276 599988 R PFAM: Tannase and feruloyl esterase; KEGG: reu:Reut_A1509 tannase and feruloyl esterase; tannase and feruloyl esterase complement(598276..599988) Alicycliphilus denitrificans BC 10102595 YP_004125224.1 CDS Alide_0567 NC_014910.1 600130 601614 R TIGRFAM: AMP nucleosidase; KEGG: aav:Aave_4246 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase-like; purine or other phosphorylase family 1; amp nucleosidase complement(600130..601614) Alicycliphilus denitrificans BC 10102596 YP_004125225.1 CDS Alide_0568 NC_014910.1 601650 603746 R TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold-3 domain protein; KEGG: dia:Dtpsy_0486 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase complement(601650..603746) Alicycliphilus denitrificans BC 10102597 YP_004125226.1 CDS Alide_0569 NC_014910.1 603849 604802 D manually curated; TIGRFAM: cation diffusion facilitator family transporter; KEGG: ajs:Ajs_3707 cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 603849..604802 Alicycliphilus denitrificans BC 10102598 YP_004125227.1 CDS Alide_0570 NC_014910.1 604799 605242 D KEGG: dia:Dtpsy_0488 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; d-tyrosyl-tRNA(tyr) deacylase 604799..605242 Alicycliphilus denitrificans BC 10102599 YP_004125228.1 CDS Alide_0571 NC_014910.1 605308 606054 R PFAM: protein of unknown function DUF81; KEGG: dia:Dtpsy_0490 protein of unknown function DUF81; hypothetical protein complement(605308..606054) Alicycliphilus denitrificans BC 10102600 YP_004125229.1 CDS Alide_0572 NC_014910.1 606220 607167 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_1220 LysR family transcriptional regulator; LysR family transcriptional regulator complement(606220..607167) Alicycliphilus denitrificans BC 10102601 YP_004125230.1 CDS Alide_0573 NC_014910.1 607272 608243 D KEGG: dac:Daci_1221 hypothetical protein; hypothetical protein 607272..608243 Alicycliphilus denitrificans BC 10102602 YP_004125231.1 CDS Alide_0574 NC_014910.1 608263 609513 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_1222 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 608263..609513 Alicycliphilus denitrificans BC 10102603 YP_004125232.1 CDS Alide_0575 NC_014910.1 609546 610532 D KEGG: dac:Daci_1223 quinone oxidoreductase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; quinone oxidoreductase, yhdh/yhfp family 609546..610532 Alicycliphilus denitrificans BC 10102604 YP_004125233.1 CDS Alide_0576 NC_014910.1 610588 612147 D PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B1709 acyl-CoA synthetase; AMP-dependent synthetase/ligase 610588..612147 Alicycliphilus denitrificans BC 10102605 YP_004125234.1 CDS Alide_0577 NC_014910.1 612164 612616 R PFAM: protein of unknown function UPF0054; KEGG: ajs:Ajs_3702 hypothetical protein; hypothetical protein complement(612164..612616) Alicycliphilus denitrificans BC 10102606 YP_004125235.1 CDS Alide_0578 NC_014910.1 612668 613618 R PFAM: PhoH family protein; KEGG: dia:Dtpsy_0492 PhoH family protein; phoh family protein complement(612668..613618) Alicycliphilus denitrificans BC 10102607 YP_004125236.1 CDS Alide_0579 NC_014910.1 613666 614238 D TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; KEGG: dia:Dtpsy_0493 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding class 1; holliday junction DNA helicase ruva 613666..614238 Alicycliphilus denitrificans BC 10102608 YP_004125237.1 CDS Alide_0580 NC_014910.1 614275 615756 D KEGG: dia:Dtpsy_0494 endoproteinase Arg-C; endoproteinase arg-c 614275..615756 Alicycliphilus denitrificans BC 10102609 YP_004125238.1 CDS Alide_0581 NC_014910.1 615770 618574 R KEGG: ajs:Ajs_3698 DnaK-related protein; molecular chaperone DnaK complement(615770..618574) Alicycliphilus denitrificans BC 10102610 YP_004125239.1 CDS Alide_0582 NC_014910.1 618571 620463 R KEGG: dac:Daci_5720 heat-shock chaperone protein; heat-shock chaperone protein complement(618571..620463) Alicycliphilus denitrificans BC 10102611 YP_004125240.1 CDS Alide_0583 NC_014910.1 620460 621065 R KEGG: dac:Daci_5721 hypothetical protein; hypothetical protein complement(620460..621065) Alicycliphilus denitrificans BC 10102612 YP_004125241.1 CDS Alide_0584 NC_014910.1 621177 622250 D SMART: AAA ATPase; manually curated; KEGG: dia:Dtpsy_0499 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; holliday junction DNA helicase ruvb 621177..622250 Alicycliphilus denitrificans BC 10102613 YP_004125242.1 CDS Alide_0585 NC_014910.1 622260 622982 R PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter; mgtc/sapb transporter complement(622260..622982) Alicycliphilus denitrificans BC 10102614 YP_004125243.1 CDS Alide_0586 NC_014910.1 623038 623388 R KEGG: dia:Dtpsy_3519 hypothetical protein; hypothetical protein complement(623038..623388) Alicycliphilus denitrificans BC 10102615 YP_004125244.1 CDS Alide_0587 NC_014910.1 623496 623690 R KEGG: ctt:CtCNB1_4283 hypothetical protein; hypothetical protein complement(623496..623690) Alicycliphilus denitrificans BC 10102616 YP_004125245.1 CDS Alide_0588 NC_014910.1 624034 625197 R PFAM: alanine racemase domain protein; KEGG: dia:Dtpsy_0501 alanine racemase domain protein; alanine racemase complement(624034..625197) Alicycliphilus denitrificans BC 10102617 YP_004125246.1 CDS Alide_0589 NC_014910.1 625181 625828 R PFAM: Phosphoglycerate mutase; KEGG: dia:Dtpsy_0502 phosphoglycerate mutase; phosphoglycerate mutase complement(625181..625828) Alicycliphilus denitrificans BC 10102618 YP_004125247.1 CDS Alide_0590 NC_014910.1 625836 626450 R KEGG: dia:Dtpsy_0504 hypothetical protein; hypothetical protein complement(625836..626450) Alicycliphilus denitrificans BC 10102619 YP_004125248.1 CDS Alide_0591 NC_014910.1 626624 627556 R PFAM: PP-loop domain protein; KEGG: dia:Dtpsy_0505 PP-loop domain protein; pp-loop domain-containing protein complement(626624..627556) Alicycliphilus denitrificans BC 10102620 YP_004125249.1 CDS Alide_0592 NC_014910.1 627561 627953 R PFAM: dihydroneopterin aldolase; KEGG: dia:Dtpsy_0506 dihydroneopterin aldolase; dihydroneopterin aldolase complement(627561..627953) Alicycliphilus denitrificans BC 10102621 YP_004125250.1 CDS Alide_0593 NC_014910.1 627958 628371 R PFAM: dihydroneopterin aldolase; KEGG: dia:Dtpsy_0507 dihydroneopterin aldolase; dihydroneopterin aldolase complement(627958..628371) Alicycliphilus denitrificans BC 10102622 YP_004125251.1 CDS Alide_0594 NC_014910.1 628368 629174 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bge:BC1002_2951 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(628368..629174) Alicycliphilus denitrificans BC 10102623 YP_004125252.1 CDS Alide_0595 NC_014910.1 629313 630398 D PFAM: protein of unknown function DUF185; KEGG: dia:Dtpsy_0510 protein of unknown function DUF185; hypothetical protein 629313..630398 Alicycliphilus denitrificans BC 10102624 YP_004125253.1 CDS Alide_0596 NC_014910.1 630425 630829 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4030 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 630425..630829 Alicycliphilus denitrificans BC 10102625 YP_004125254.1 CDS Alide_0597 NC_014910.1 630833 631027 D KEGG: dia:Dtpsy_0515 hypothetical protein; hypothetical protein 630833..631027 Alicycliphilus denitrificans BC 10102626 YP_004125255.1 CDS Alide_0598 NC_014910.1 631170 632129 D PFAM: ROK family protein; KEGG: ajs:Ajs_0500 glucokinase; rok family protein 631170..632129 Alicycliphilus denitrificans BC 10102627 YP_004125256.1 CDS Alide_0599 NC_014910.1 632090 633481 R TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; KEGG: ajs:Ajs_0501 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase complement(632090..633481) Alicycliphilus denitrificans BC 10102628 YP_004125257.1 CDS Alide_0601 NC_014910.1 635284 636039 R KEGG: dia:Dtpsy_0519 trehalose-phosphatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; trehalose-phosphatase complement(635284..636039) Alicycliphilus denitrificans BC 10102630 YP_004125258.1 CDS Alide_0602 NC_014910.1 636182 636628 D KEGG: dia:Dtpsy_0520 thioredoxin; TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain-containing protein; thioredoxin 636182..636628 Alicycliphilus denitrificans BC 10102631 YP_004125259.1 CDS Alide_0603 NC_014910.1 636617 637864 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: dia:Dtpsy_0521 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; polynucleotide adenylyltransferase complement(636617..637864) Alicycliphilus denitrificans BC 10102632 YP_004125260.1 CDS Alide_0604 NC_014910.1 637931 638914 D KEGG: vei:Veis_3990 sigma-54 dependent trancsriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 637931..638914 Alicycliphilus denitrificans BC 10102633 YP_004125261.1 CDS Alide_0605 NC_014910.1 639099 640460 D KEGG: vei:Veis_3993 hypothetical protein; hypothetical protein 639099..640460 Alicycliphilus denitrificans BC 10102634 YP_004125262.1 CDS Alide_0606 NC_014910.1 640475 640795 D KEGG: vei:Veis_3992 hypothetical protein; hypothetical protein 640475..640795 Alicycliphilus denitrificans BC 10102635 YP_004125263.1 CDS Alide_0607 NC_014910.1 640833 641804 D KEGG: vei:Veis_3991 hypothetical protein; hypothetical protein 640833..641804 Alicycliphilus denitrificans BC 10102636 YP_004125264.1 CDS Alide_0608 NC_014910.1 641806 642576 R PFAM: metallophosphoesterase; KEGG: dia:Dtpsy_0522 metallophosphoesterase; metallophosphoesterase complement(641806..642576) Alicycliphilus denitrificans BC 10102637 YP_004125265.1 CDS Alide_0609 NC_014910.1 642595 643281 R PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_0507 glutathione S-transferase domain-containing protein; glutathione s-transferase domain-containing protein complement(642595..643281) Alicycliphilus denitrificans BC 10102638 YP_004125266.1 CDS Alide_0610 NC_014910.1 643370 643942 R KEGG: dia:Dtpsy_0524 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(643370..643942) Alicycliphilus denitrificans BC 10102639 YP_004125267.1 CDS Alide_0611 NC_014910.1 643957 645939 D PFAM: Lytic transglycosylase catalytic; KEGG: dia:Dtpsy_0525 lytic transglycosylase catalytic; lytic transglycosylase 643957..645939 Alicycliphilus denitrificans BC 10102640 YP_004125268.1 CDS Alide_0612 NC_014910.1 646002 646529 R KEGG: ajs:Ajs_0510 cytochrome b561; cytochrome b561 complement(646002..646529) Alicycliphilus denitrificans BC 10102641 YP_004125269.1 CDS Alide_0613 NC_014910.1 646529 646801 R KEGG: dia:Dtpsy_0527 signal peptide protein; hypothetical protein complement(646529..646801) Alicycliphilus denitrificans BC 10102642 YP_004125270.1 CDS Alide_0614 NC_014910.1 646938 647621 R KEGG: ajs:Ajs_0512 hydroxylase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; 2OG-Fe(II) oxygenase complement(646938..647621) Alicycliphilus denitrificans BC 10102643 YP_004125271.1 CDS Alide_0615 NC_014910.1 647615 648712 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ajs:Ajs_0513 (S)-2-hydroxy-acid oxidase; fmn-dependent alpha-hydroxy acid dehydrogenase complement(647615..648712) Alicycliphilus denitrificans BC 10102644 YP_004125272.1 CDS Alide_0616 NC_014910.1 648766 651054 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_0514 TonB-dependent receptor; tonb-dependent receptor complement(648766..651054) Alicycliphilus denitrificans BC 10102645 YP_004125273.1 CDS Alide_0617 NC_014910.1 651209 652135 R KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein complement(651209..652135) Alicycliphilus denitrificans BC 10102646 YP_004125274.1 CDS Alide_0618 NC_014910.1 652154 653839 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(652154..653839) Alicycliphilus denitrificans BC 10102647 YP_004125275.1 CDS Alide_0619 NC_014910.1 653962 654864 D KEGG: dia:Dtpsy_0533 PGAP1 family protein; pgap1 family protein 653962..654864 Alicycliphilus denitrificans BC 10102648 YP_004125276.1 CDS Alide_0620 NC_014910.1 654967 656184 R PFAM: Beta-ketoacyl synthase; KEGG: dia:Dtpsy_0542 beta-ketoacyl synthase; beta-ketoacyl synthase complement(654967..656184) Alicycliphilus denitrificans BC 10102649 YP_004125277.1 CDS Alide_0621 NC_014910.1 656199 656705 R TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: dia:Dtpsy_0541 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(ACP) dehydratase FabA complement(656199..656705) Alicycliphilus denitrificans BC 10102650 YP_004125278.1 CDS Alide_0622 NC_014910.1 656794 658383 R KEGG: ajs:Ajs_0524 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein n-acyltransferase complement(656794..658383) Alicycliphilus denitrificans BC 10102651 YP_004125279.1 CDS Alide_0623 NC_014910.1 658383 659270 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: ajs:Ajs_0523 CBS domain-containing protein; CBS domain-containing protein complement(658383..659270) Alicycliphilus denitrificans BC 10102652 YP_004125280.1 CDS Alide_0624 NC_014910.1 659381 660082 R KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase complement(659381..660082) Alicycliphilus denitrificans BC 10102653 YP_004125281.1 CDS Alide_0625 NC_014910.1 660233 660718 R KEGG: dia:Dtpsy_0537 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein complement(660233..660718) Alicycliphilus denitrificans BC 10102654 YP_004125282.1 CDS Alide_0626 NC_014910.1 660878 661999 D TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: ajs:Ajs_0520 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 660878..661999 Alicycliphilus denitrificans BC 10102655 YP_004125283.1 CDS Alide_0627 NC_014910.1 662001 662825 D TIGRFAM: phenylalanine-4-hydroxylase; KEGG: dia:Dtpsy_0534 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase-like; phenylalanine-4-hydroxylase 662001..662825 Alicycliphilus denitrificans BC 10102656 YP_004125284.1 CDS Alide_0628 NC_014910.1 662966 664201 D KEGG: pol:Bpro_0273 branched-chain alpha-keto acid dehydrogenase E1 component; PFAM: dehydrogenase E1 component; 3-methyl-2-oxobutanoate dehydrogenase 662966..664201 Alicycliphilus denitrificans BC 10102657 YP_004125285.1 CDS Alide_0629 NC_014910.1 664241 665245 D PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: pol:Bpro_0274 branched-chain alpha-keto acid dehydrogenase E1 component; transketolase central region protein 664241..665245 Alicycliphilus denitrificans BC 10102658 YP_004125286.1 CDS Alide_0630 NC_014910.1 665247 666554 D PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: bpt:Bpet3509 branched-chain alpha-keto acid dehydrogenase subunit E2; hypothetical protein 665247..666554 Alicycliphilus denitrificans BC 10102659 YP_004125287.1 CDS Alide_0631 NC_014910.1 666562 667959 D KEGG: bch:Bcen2424_1246 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 666562..667959 Alicycliphilus denitrificans BC 10102660 YP_004125288.1 CDS Alide_0632 NC_014910.1 668064 669002 D TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: dac:Daci_1288 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha 668064..669002 Alicycliphilus denitrificans BC 10102661 YP_004125289.1 CDS Alide_0633 NC_014910.1 669022 671187 D TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: ajs:Ajs_0528 glycine--tRNA ligase; glycyl-tRNA synthetase subunit beta 669022..671187 Alicycliphilus denitrificans BC 10102662 YP_004125290.1 CDS Alide_0634 NC_014910.1 671233 671808 D TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dia:Dtpsy_0545 histidinol-phosphate phosphatase family protein; histidinol-phosphate phosphatase family protein 671233..671808 Alicycliphilus denitrificans BC 10102663 YP_004125291.1 CDS Alide_0635 NC_014910.1 672059 672802 D KEGG: ajs:Ajs_0530 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 672059..672802 Alicycliphilus denitrificans BC 10102664 YP_004125292.1 CDS Alide_0636 NC_014910.1 672805 673608 D PFAM: protein of unknown function DUF45; KEGG: dia:Dtpsy_0547 protein of unknown function DUF45; hypothetical protein 672805..673608 Alicycliphilus denitrificans BC 10102665 YP_004125293.1 CDS Alide_0637 NC_014910.1 673669 674103 D SMART: Rhodanese domain protein; KEGG: ajs:Ajs_0532 rhodanese domain-containing protein; rhodanese domain-containing protein 673669..674103 Alicycliphilus denitrificans BC 10102666 YP_004125294.1 CDS Alide_0638 NC_014910.1 674108 674596 R KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; transport-associated; SMART: Peptidoglycan-binding LysM; peptidoglycan-binding lysin domain-containing protein complement(674108..674596) Alicycliphilus denitrificans BC 10102667 YP_004125295.1 CDS Alide_0639 NC_014910.1 674743 675519 D KEGG: dia:Dtpsy_0550 pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; Baf family transcriptional activator 674743..675519 Alicycliphilus denitrificans BC 10102668 YP_004125296.1 CDS Alide_0640 NC_014910.1 675516 676193 R PFAM: regulatory protein TetR; KEGG: dia:Dtpsy_0551 transcriptional regulator, TetR family; regulatory protein tetr complement(675516..676193) Alicycliphilus denitrificans BC 10102669 YP_004125297.1 CDS Alide_0641 NC_014910.1 676351 676794 R KEGG: dia:Dtpsy_0552 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; poly(hydroxyalkanoate) granule-associated protein complement(676351..676794) Alicycliphilus denitrificans BC 10102670 YP_004125298.1 CDS Alide_0642 NC_014910.1 676993 678054 D KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dtdp-glucose 4,6-dehydratase 676993..678054 Alicycliphilus denitrificans BC 10102671 YP_004125299.1 CDS Alide_0643 NC_014910.1 678051 678929 D TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: ajs:Ajs_0538 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; dtdp-4-dehydrorhamnose reductase 678051..678929 Alicycliphilus denitrificans BC 10102672 YP_004125300.1 CDS Alide_0644 NC_014910.1 678940 679830 D KEGG: bvi:Bcep1808_3215 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 678940..679830 Alicycliphilus denitrificans BC 10102673 YP_004125301.1 CDS Alide_0645 NC_014910.1 679830 680375 D TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: dia:Dtpsy_0556 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dtdp-4-dehydrorhamnose 3,5-epimerase 679830..680375 Alicycliphilus denitrificans BC 10102674 YP_004125302.1 CDS Alide_0646 NC_014910.1 680366 681547 D PFAM: protein of unknown function DUF1972; glycosyl transferase group 1; KEGG: gme:Gmet_2169 glycosyltransferase-like protein; hypothetical protein 680366..681547 Alicycliphilus denitrificans BC 10102675 YP_004125303.1 CDS Alide_0647 NC_014910.1 681544 682455 D KEGG: ajs:Ajs_0541 rhamnosyltransferase; TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase family 2; rhamnosyltransferase 681544..682455 Alicycliphilus denitrificans BC 10102676 YP_004125304.1 CDS Alide_0648 NC_014910.1 682463 684166 D PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: vei:Veis_0688 general secretory pathway protein E; type II secretion system protein e 682463..684166 Alicycliphilus denitrificans BC 10102677 YP_004125305.1 CDS Alide_0649 NC_014910.1 684159 685370 D PFAM: Type II secretion system F domain; KEGG: eba:ebA1619 general secretion pathway protein F; type II secretion system f domain-containing protein 684159..685370 Alicycliphilus denitrificans BC 10102678 YP_004125306.1 CDS Alide_0650 NC_014910.1 685397 685837 D KEGG: aav:Aave_4158 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein g 685397..685837 Alicycliphilus denitrificans BC 10102679 YP_004125307.1 CDS Alide_0651 NC_014910.1 685867 686349 D KEGG: dac:Daci_1302 general secretion pathway protein H; general secretion pathway protein h 685867..686349 Alicycliphilus denitrificans BC 10102680 YP_004125308.1 CDS Alide_0652 NC_014910.1 686346 686747 D KEGG: vei:Veis_0684 general secretion pathway protein I; hypothetical protein 686346..686747 Alicycliphilus denitrificans BC 10102681 YP_004125309.1 CDS Alide_0653 NC_014910.1 686744 687355 D KEGG: vei:Veis_0683 general secretion pathway protein J; hypothetical protein 686744..687355 Alicycliphilus denitrificans BC 10102682 YP_004125310.1 CDS Alide_0654 NC_014910.1 687352 688263 D KEGG: eba:ebA1612 general secretory pathway protein K; hypothetical protein 687352..688263 Alicycliphilus denitrificans BC 10102683 YP_004125311.1 CDS Alide_0655 NC_014910.1 688260 689273 D PFAM: Fimbrial assembly family protein; KEGG: aav:Aave_4153 fimbrial assembly family protein; fimbrial assembly family protein 688260..689273 Alicycliphilus denitrificans BC 10102684 YP_004125312.1 CDS Alide_0656 NC_014910.1 689270 689818 D PFAM: General secretion pathway protein M; KEGG: vei:Veis_0680 general secretion pathway protein M; general secretion pathway protein m 689270..689818 Alicycliphilus denitrificans BC 10102685 YP_004125313.1 CDS Alide_0657 NC_014910.1 689815 690300 D KEGG: fgr:FG01491.1 hypothetical protein; hypothetical protein 689815..690300 Alicycliphilus denitrificans BC 10102686 YP_004125314.1 CDS Alide_0658 NC_014910.1 690474 692777 D KEGG: eba:ebA1602 general (type II) secretion pathway (GSP) D protein; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein d 690474..692777 Alicycliphilus denitrificans BC 10102687 YP_004125315.1 CDS Alide_0659 NC_014910.1 692992 693435 D KEGG: dac:Daci_1310 hypothetical protein; hypothetical protein 692992..693435 Alicycliphilus denitrificans BC 10102688 YP_004125316.1 CDS Alide_0660 NC_014910.1 693609 694457 D KEGG: azc:AZC_2635 hypothetical protein; hypothetical protein 693609..694457 Alicycliphilus denitrificans BC 10102689 YP_004125317.1 CDS Alide_0661 NC_014910.1 694570 695670 D KEGG: dre:541320 integrin, alpha 6b; hypothetical protein 694570..695670 Alicycliphilus denitrificans BC 10102690 YP_004125318.1 CDS Alide_0662 NC_014910.1 695716 696597 D KEGG: aco:Amico_0081 PpiC-type peptidyl-prolyl cis-trans isomerase; hypothetical protein 695716..696597 Alicycliphilus denitrificans BC 10102691 YP_004125319.1 CDS Alide_0663 NC_014910.1 696648 697319 D PFAM: Methyltransferase type 11; KEGG: pnu:Pnuc_0320 methyltransferase type 11; type 11 methyltransferase 696648..697319 Alicycliphilus denitrificans BC 10102692 YP_004125320.1 CDS Alide_0664 NC_014910.1 697506 698483 D PFAM: glycosyl transferase family 2; KEGG: ter:Tery_4437 glycosyl transferase family protein; family 2 glycosyl transferase 697506..698483 Alicycliphilus denitrificans BC 10102693 YP_004125321.1 CDS Alide_0665 NC_014910.1 698630 699793 D PFAM: glycosyl transferase group 1; KEGG: lxx:Lxx04950 glycosyl transferase; group 1 glycosyl transferase 698630..699793 Alicycliphilus denitrificans BC 10102694 YP_004125322.1 CDS Alide_0666 NC_014910.1 699864 700688 D PFAM: ABC transporter; KEGG: mag:amb1063 ABC-type polysaccharide/polyol phosphate export systems; ABC transporter 699864..700688 Alicycliphilus denitrificans BC 10102695 YP_004125323.1 CDS Alide_0667 NC_014910.1 700688 701908 D KEGG: vei:Veis_0673 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 700688..701908 Alicycliphilus denitrificans BC 10102696 YP_004125324.1 CDS Alide_0668 NC_014910.1 701890 702801 D KEGG: ajs:Ajs_3056 lipid A biosynthesis acyltransferase; hypothetical protein 701890..702801 Alicycliphilus denitrificans BC 10102697 YP_004125325.1 CDS Alide_0669 NC_014910.1 702794 703798 D PFAM: Methyltransferase type 11; KEGG: azl:AZL_f01750 hypothetical protein; type 11 methyltransferase 702794..703798 Alicycliphilus denitrificans BC 10102698 YP_004125326.1 CDS Alide_0670 NC_014910.1 703815 704459 D PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc0977 transglycosylase signal peptide protein; lytic transglycosylase 703815..704459 Alicycliphilus denitrificans BC 10102699 YP_004125327.1 CDS Alide_0671 NC_014910.1 704493 705593 D PFAM: Glycosyl transferase, family 4, conserved region; KEGG: vei:Veis_1227 glycosyl transferase family protein; glycosyl transferase 704493..705593 Alicycliphilus denitrificans BC 10102700 YP_004125328.1 CDS Alide_0672 NC_014910.1 705654 706544 D TIGRFAM: acetylglutamate kinase; KEGG: ajs:Ajs_0588 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 705654..706544 Alicycliphilus denitrificans BC 10102701 YP_004125329.1 CDS Alide_0673 NC_014910.1 706727 707362 D PFAM: regulatory protein TetR; KEGG: ajs:Ajs_0589 nucleoid occlusion protein; regulatory protein tetr 706727..707362 Alicycliphilus denitrificans BC 10102702 YP_004125330.1 CDS Alide_0674 NC_014910.1 707504 708160 D PFAM: regulatory protein TetR; KEGG: dia:Dtpsy_0570 transcriptional regulator, TetR family; regulatory protein tetr 707504..708160 Alicycliphilus denitrificans BC 10102703 YP_004125331.1 CDS Alide_0675 NC_014910.1 708208 710004 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_0571 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 708208..710004 Alicycliphilus denitrificans BC 10102704 YP_004125332.1 CDS Alide_0676 NC_014910.1 710075 710503 D KEGG: dia:Dtpsy_0572 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2147; hypothetical protein 710075..710503 Alicycliphilus denitrificans BC 10102705 YP_004125333.1 CDS Alide_0677 NC_014910.1 710525 712927 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; Enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_1339 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 710525..712927 Alicycliphilus denitrificans BC 10102706 YP_004125334.1 CDS Alide_0678 NC_014910.1 712948 714141 D TIGRFAM: acetyl-CoA acetyltransferase; KEGG: mpt:Mpe_A0416 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 712948..714141 Alicycliphilus denitrificans BC 10102707 YP_004125335.1 CDS Alide_0679 NC_014910.1 714185 715018 D KEGG: dia:Dtpsy_0576 hypothetical protein; hypothetical protein 714185..715018 Alicycliphilus denitrificans BC 10102708 YP_004125336.1 CDS Alide_0680 NC_014910.1 715026 715802 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_0577 enoyl-CoA hydratase; enoyl-CoA hydratase 715026..715802 Alicycliphilus denitrificans BC 10102709 YP_004125337.1 CDS Alide_0681 NC_014910.1 716058 716615 D PFAM: protein of unknown function DUF583; KEGG: dia:Dtpsy_0579 protein of unknown function DUF583; hypothetical protein 716058..716615 Alicycliphilus denitrificans BC 10102710 YP_004125338.1 CDS Alide_0682 NC_014910.1 716667 717092 R PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0601 thioesterase superfamily protein; thioesterase superfamily protein complement(716667..717092) Alicycliphilus denitrificans BC 10102711 YP_004125339.1 CDS Alide_0683 NC_014910.1 717135 719024 D KEGG: ajs:Ajs_0602 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; ABC transporter 717135..719024 Alicycliphilus denitrificans BC 10102712 YP_004125340.1 CDS Alide_0684 NC_014910.1 719354 720970 D PFAM: AMP-dependent synthetase and ligase; KEGG: reh:PHG398 acyl-CoA synthetase; AMP-dependent synthetase/ligase 719354..720970 Alicycliphilus denitrificans BC 10102713 YP_004125341.1 CDS Alide_0685 NC_014910.1 720974 721444 D PFAM: MaoC domain protein dehydratase; KEGG: reh:PHG397 hypothetical protein; MaoC domain-containing protein 720974..721444 Alicycliphilus denitrificans BC 10102714 YP_004125342.1 CDS Alide_0686 NC_014910.1 721484 722479 D KEGG: reh:PHG396 NagM-like protein; nagm-like protein 721484..722479 Alicycliphilus denitrificans BC 10102715 YP_004125343.1 CDS Alide_0687 NC_014910.1 722528 723505 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: reh:PHG395 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 722528..723505 Alicycliphilus denitrificans BC 10102716 YP_004125344.1 CDS Alide_0688 NC_014910.1 723514 724503 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reh:PHG401 regulatory protein; LysR family transcriptional regulator 723514..724503 Alicycliphilus denitrificans BC 10102717 YP_004125345.1 CDS Alide_0689 NC_014910.1 724552 725889 D PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase; mazg nucleotide pyrophosphohydrolase 724552..725889 Alicycliphilus denitrificans BC 10102718 YP_004125346.1 CDS Alide_0690 NC_014910.1 725944 726975 R KEGG: ajs:Ajs_0604 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; trap dicarboxylate transporter subunit DctP complement(725944..726975) Alicycliphilus denitrificans BC 10102719 YP_004125347.1 CDS Alide_0691 NC_014910.1 726999 728297 R KEGG: ajs:Ajs_0605 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM complement(726999..728297) Alicycliphilus denitrificans BC 10102720 YP_004125348.1 CDS Alide_0692 NC_014910.1 728294 728875 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ajs:Ajs_0606 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter dctq component complement(728294..728875) Alicycliphilus denitrificans BC 10102721 YP_004125349.1 CDS Alide_0693 NC_014910.1 729042 729989 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dia:Dtpsy_0586 transcriptional regulator, LysR family; LysR family transcriptional regulator 729042..729989 Alicycliphilus denitrificans BC 10102722 YP_004125350.1 CDS Alide_0694 NC_014910.1 730193 731092 D KEGG: dia:Dtpsy_0588 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 730193..731092 Alicycliphilus denitrificans BC 10102723 YP_004125351.1 CDS Alide_0695 NC_014910.1 731196 731948 D KEGG: dia:Dtpsy_0589 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 731196..731948 Alicycliphilus denitrificans BC 10102724 YP_004125352.1 CDS Alide_0696 NC_014910.1 731950 732621 D KEGG: dia:Dtpsy_0590 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 731950..732621 Alicycliphilus denitrificans BC 10102725 YP_004125353.1 CDS Alide_0697 NC_014910.1 732646 733383 D KEGG: dia:Dtpsy_0591 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 732646..733383 Alicycliphilus denitrificans BC 10102726 YP_004125354.1 CDS Alide_0698 NC_014910.1 733489 734523 R KEGG: dia:Dtpsy_0592 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin; ornithine cyclodeaminase complement(733489..734523) Alicycliphilus denitrificans BC 10102727 YP_004125355.1 CDS Alide_0699 NC_014910.1 734584 735405 R KEGG: ajs:Ajs_0616 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; HAD-superfamily hydrolase complement(734584..735405) Alicycliphilus denitrificans BC 10102728 YP_004125356.1 CDS Alide_0700 NC_014910.1 735408 737033 R KEGG: ctt:CtCNB1_0527 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; peptide chain release factor 3 complement(735408..737033) Alicycliphilus denitrificans BC 10102729 YP_004125357.1 CDS Alide_0701 NC_014910.1 737136 737906 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0646 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(737136..737906) Alicycliphilus denitrificans BC 10102730 YP_004125358.1 CDS Alide_0702 NC_014910.1 738148 739578 D TIGRFAM: adenosylhomocysteinase; KEGG: dia:Dtpsy_0597 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 738148..739578 Alicycliphilus denitrificans BC 10102731 YP_004125359.1 CDS Alide_0703 NC_014910.1 739685 740686 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_0619 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase rrmj/ftsj 739685..740686 Alicycliphilus denitrificans BC 10102732 YP_004125360.1 CDS Alide_0704 NC_014910.1 740683 741510 D TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dia:Dtpsy_0599 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 740683..741510 Alicycliphilus denitrificans BC 10102733 YP_004125361.1 CDS Alide_0705 NC_014910.1 741738 742256 D KEGG: ajs:Ajs_0622 rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; rare lipoprotein a 741738..742256 Alicycliphilus denitrificans BC 10102734 YP_004125362.1 CDS Alide_0706 NC_014910.1 742257 743174 R PFAM: protein of unknown function DUF519; KEGG: dia:Dtpsy_0602 protein of unknown function DUF519; hypothetical protein complement(742257..743174) Alicycliphilus denitrificans BC 10102735 YP_004125363.1 CDS Alide_0707 NC_014910.1 743351 745147 D KEGG: ajs:Ajs_0624 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; serine/threonine-protein kinase-like domain-containing protein 743351..745147 Alicycliphilus denitrificans BC 10102736 YP_004125364.1 CDS Alide_0708 NC_014910.1 745253 745720 D KEGG: aav:Aave_4053 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; 50S ribosomal protein L13 745253..745720 Alicycliphilus denitrificans BC 10102737 YP_004125365.1 CDS Alide_0709 NC_014910.1 745730 746122 D PFAM: ribosomal protein S9; KEGG: ctt:CtCNB1_0541 ribosomal protein S9; 30S ribosomal protein S9 745730..746122 Alicycliphilus denitrificans BC 10102738 YP_004125366.1 CDS Alide_0710 NC_014910.1 746286 746660 D KEGG: dia:Dtpsy_0608 iron-sulfur cluster insertion protein ErpA; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly accessory protein 746286..746660 Alicycliphilus denitrificans BC 10102739 YP_004125367.1 CDS Alide_0711 NC_014910.1 746737 747225 R KEGG: rfr:Rfer_0842 hypothetical protein; hypothetical protein complement(746737..747225) Alicycliphilus denitrificans BC 10102740 YP_004125368.1 CDS Alide_0712 NC_014910.1 747617 748741 R PFAM: protein of unknown function UPF0075; KEGG: dia:Dtpsy_0609 anhydro-N-acetylmuramic acid kinase; hypothetical protein complement(747617..748741) Alicycliphilus denitrificans BC 10102741 YP_004125369.1 CDS Alide_0713 NC_014910.1 748757 750139 R PFAM: Peptidase M23; KEGG: ajs:Ajs_0631 peptidase M23B; peptidase m23 complement(748757..750139) Alicycliphilus denitrificans BC 10102742 YP_004125370.1 CDS Alide_0714 NC_014910.1 750311 751543 D TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; KEGG: ajs:Ajs_0632 tyrosyl-tRNA synthetase; SMART: RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 750311..751543 Alicycliphilus denitrificans BC 10102743 YP_004125371.1 CDS Alide_0715 NC_014910.1 751605 752561 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0634 LysR family transcriptional regulator; LysR family transcriptional regulator complement(751605..752561) Alicycliphilus denitrificans BC 10102744 YP_004125372.1 CDS Alide_0716 NC_014910.1 752622 754046 D TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: ajs:Ajs_0636 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; udp-n-acetylglucosamine pyrophosphorylase 752622..754046 Alicycliphilus denitrificans BC 10102745 YP_004125373.1 CDS Alide_0717 NC_014910.1 754043 754825 D KEGG: ajs:Ajs_0637 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; ATP-binding domain-containing protein 754043..754825 Alicycliphilus denitrificans BC 10102746 YP_004125374.1 CDS Alide_0718 NC_014910.1 754854 755189 R KEGG: dia:Dtpsy_0617 MerR family transcriptional regulator; merr family transcriptional regulator complement(754854..755189) Alicycliphilus denitrificans BC 10102747 YP_004125375.1 CDS Alide_0719 NC_014910.1 755192 756187 R KEGG: dia:Dtpsy_0618 heat shock protein DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; molecular chaperone DnaJ complement(755192..756187) Alicycliphilus denitrificans BC 10102748 YP_004125376.1 CDS Alide_0720 NC_014910.1 756292 756783 R KEGG: ajs:Ajs_0640 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein complement(756292..756783) Alicycliphilus denitrificans BC 10102749 YP_004125377.1 CDS Alide_0721 NC_014910.1 756918 758828 D KEGG: dia:Dtpsy_0620 glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); glucosamine/fructose-6-phosphate aminotransferase 756918..758828 Alicycliphilus denitrificans BC 10102750 YP_004125378.1 CDS Alide_0722 NC_014910.1 759177 761135 D manually curated; KEGG: vei:Veis_4900 hypothetical protein; hypothetical protein 759177..761135 Alicycliphilus denitrificans BC 10102751 YP_004125379.1 CDS Alide_0725 NC_014910.1 763505 764419 R PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein complement(763505..764419) Alicycliphilus denitrificans BC 10102754 YP_004125380.1 CDS Alide_0726 NC_014910.1 764416 764739 R PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein complement(764416..764739) Alicycliphilus denitrificans BC 10102755 YP_004125381.1 CDS Alide_0728 NC_014910.1 765493 765747 R KEGG: ctt:CtCNB1_4017 hypothetical protein; hypothetical protein complement(765493..765747) Alicycliphilus denitrificans BC 10102757 YP_004125382.1 CDS Alide_0729 NC_014910.1 765821 766609 R PFAM: oxidoreductase molybdopterin binding; KEGG: ctt:CtCNB1_4018 oxidoreductase, molybdopterin binding protein; oxidoreductase molybdopterin binding protein complement(765821..766609) Alicycliphilus denitrificans BC 10102758 YP_004125383.1 CDS Alide_0730 NC_014910.1 766606 767262 R KEGG: ctt:CtCNB1_4019 transmembrane hydrogenase cytochrome; transmembrane hydrogenase cytochrome complement(766606..767262) Alicycliphilus denitrificans BC 10102759 YP_004125384.1 CDS Alide_0731 NC_014910.1 767358 768068 D KEGG: pol:Bpro_0543 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 767358..768068 Alicycliphilus denitrificans BC 10102760 YP_004125385.1 CDS Alide_0732 NC_014910.1 768065 769546 D KEGG: vap:Vapar_2987 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 768065..769546 Alicycliphilus denitrificans BC 10102761 YP_004125386.1 CDS Alide_0733 NC_014910.1 769564 769911 R KEGG: rru:Rru_A2708 hypothetical protein; hypothetical protein complement(769564..769911) Alicycliphilus denitrificans BC 10102762 YP_004125387.1 CDS Alide_0734 NC_014910.1 770087 770893 R KEGG: cja:CJA_0975 von Willebrand factor type A domain protein; PFAM: protein of unknown function DUF1555; von Willebrand factor type A; SMART: von Willebrand factor type A; hypothetical protein complement(770087..770893) Alicycliphilus denitrificans BC 10102763 YP_004125388.1 CDS Alide_0735 NC_014910.1 771304 772746 D TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: rfr:Rfer_0711 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; mannose-1-phosphate guanylyltransferase 771304..772746 Alicycliphilus denitrificans BC 10102764 YP_004125389.1 CDS Alide_0736 NC_014910.1 772970 773611 D KEGG: rfr:Rfer_0658 polysaccharide export protein; TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; Soluble ligand binding domain; polysaccharide export protein 772970..773611 Alicycliphilus denitrificans BC 10102765 YP_004125390.1 CDS Alide_0737 NC_014910.1 773658 775220 D manually curated; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis; PFAM: lipopolysaccharide biosynthesis protein; polysaccharide chain length determinant protein 773658..775220 Alicycliphilus denitrificans BC 10102766 YP_004125391.1 CDS Alide_0738 NC_014910.1 775229 776191 D manually curated; KEGG: app:CAP2UW1_1413 non-specific protein-tyrosine kinase; non-specific protein-tyrosine kinase 775229..776191 Alicycliphilus denitrificans BC 10102767 YP_004125392.1 CDS Alide_0739 NC_014910.1 776213 777868 D TIGRFAM: PEP-CTERM system associated protein; KEGG: rfr:Rfer_0661 hypothetical protein; pep-cterm system associated protein 776213..777868 Alicycliphilus denitrificans BC 10102768 YP_004125393.1 CDS Alide_0740 NC_014910.1 777872 778972 D KEGG: rfr:Rfer_0662 ATPase; TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase; secretion atpase, pep-cterm locus subfamily 777872..778972 Alicycliphilus denitrificans BC 10102769 YP_004125394.1 CDS Alide_0741 NC_014910.1 778981 779847 D KEGG: app:CAP2UW1_1417 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; polysaccharide deacetylase 778981..779847 Alicycliphilus denitrificans BC 10102770 YP_004125395.1 CDS Alide_0742 NC_014910.1 779855 780901 D KEGG: rfr:Rfer_0665 hypothetical protein; manually curated; TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; FemAB-like protein 779855..780901 Alicycliphilus denitrificans BC 10102771 YP_004125396.1 CDS Alide_0743 NC_014910.1 780915 782153 D KEGG: dar:Daro_2405 glycosyl transferase, group 1; TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; sugar transferase, pep-cterm/epsh1 system associated 780915..782153 Alicycliphilus denitrificans BC 10102772 YP_004125397.1 CDS Alide_0744 NC_014910.1 782131 783732 D KEGG: rfr:Rfer_0666 hypothetical protein; TIGRFAM: exosortase 1; eight transmembrane protein EpsH; EpsI family protein; PFAM: Exosortase EpsH-related; exosortase 782131..783732 Alicycliphilus denitrificans BC 10102773 YP_004125398.1 CDS Alide_0745 NC_014910.1 783735 785645 D TIGRFAM: exosortase 1 system-associated amidotransferase 1; asparagine synthase (glutamine-hydrolyzing); KEGG: rfr:Rfer_0669 asparagine synthase, glutamine-hydrolyzing; PFAM: asparagine synthase; glutamine amidotransferase class-II; exosortase 783735..785645 Alicycliphilus denitrificans BC 10102774 YP_004125399.1 CDS Alide_0746 NC_014910.1 785638 786780 D KEGG: dar:Daro_2407 glycosyl transferase, group 1; TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; sugar transferase, pep-cterm/epsh1 system associated 785638..786780 Alicycliphilus denitrificans BC 10102775 YP_004125400.1 CDS Alide_0747 NC_014910.1 786794 788011 D KEGG: dar:Daro_2409 glycosyl transferase, group 1; manually curated; PFAM: glycosyl transferase group 1; group 1 glycosyl transferase 786794..788011 Alicycliphilus denitrificans BC 10102776 YP_004125401.1 CDS Alide_0748 NC_014910.1 788008 789159 D TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: gme:Gmet_1489 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; udp-n-acetylglucosamine 2-epimerase 788008..789159 Alicycliphilus denitrificans BC 10102777 YP_004125402.1 CDS Alide_0749 NC_014910.1 789149 790369 D KEGG: geo:Geob_3227 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 789149..790369 Alicycliphilus denitrificans BC 10102778 YP_004125403.1 CDS Alide_0750 NC_014910.1 790392 791618 D PFAM: glycosyl transferase group 1; KEGG: hse:Hsero_2751 glycosyltransferase 1 protein; group 1 glycosyl transferase 790392..791618 Alicycliphilus denitrificans BC 10102779 YP_004125404.1 CDS Alide_0751 NC_014910.1 791714 791845 D hypothetical protein 791714..791845 Alicycliphilus denitrificans BC 10102780 YP_004125405.1 CDS Alide_0752 NC_014910.1 792011 793336 D KEGG: hse:Hsero_2764 O-antigen polymerase; TIGRFAM: wzy family polymerase, exosortase system type 1 associated; PFAM: O-antigen polymerase; wzy family polymerase, exosortase system type 1 associated 792011..793336 Alicycliphilus denitrificans BC 10102781 YP_004125406.1 CDS Alide_0753 NC_014910.1 793333 794295 D PFAM: polysaccharide deacetylase; KEGG: azo:azo3266 polysaccharide deacetylase; polysaccharide deacetylase 793333..794295 Alicycliphilus denitrificans BC 10102782 YP_004125407.1 CDS Alide_0754 NC_014910.1 794292 795305 D PFAM: polysaccharide deacetylase; KEGG: nmu:Nmul_A0301 polysaccharide deacetylase; polysaccharide deacetylase 794292..795305 Alicycliphilus denitrificans BC 10102783 YP_004125408.1 CDS Alide_0755 NC_014910.1 795311 796354 D KEGG: psl:Psta_3837 hypothetical protein; hypothetical protein 795311..796354 Alicycliphilus denitrificans BC 10102784 YP_004125409.1 CDS Alide_0756 NC_014910.1 796355 797302 R PFAM: glycosyl transferase family 2; KEGG: aeh:Mlg_0132 glycosyl transferase family protein; family 2 glycosyl transferase complement(796355..797302) Alicycliphilus denitrificans BC 10102785 YP_004125410.1 CDS Alide_0757 NC_014910.1 797372 798820 R PFAM: polysaccharide biosynthesis protein; KEGG: nwa:Nwat_1744 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(797372..798820) Alicycliphilus denitrificans BC 10102786 YP_004125411.1 CDS Alide_0758 NC_014910.1 798978 800255 D KEGG: reu:Reut_B5375 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 798978..800255 Alicycliphilus denitrificans BC 10102787 YP_004125412.1 CDS Alide_0759 NC_014910.1 800258 801334 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: abo:ABO_0909 4-epimerase; NAD-dependent epimerase/dehydratase 800258..801334 Alicycliphilus denitrificans BC 10102788 YP_004125413.1 CDS Alide_0760 NC_014910.1 801461 803365 R PFAM: sulfatase; KEGG: eli:ELI_12100 sulfatase; sulfatase complement(801461..803365) Alicycliphilus denitrificans BC 10102789 YP_004125414.1 CDS Alide_0761 NC_014910.1 803665 805563 R KEGG: hse:Hsero_2760 hypothetical protein; hypothetical protein complement(803665..805563) Alicycliphilus denitrificans BC 10102790 YP_004125415.1 CDS Alide_0762 NC_014910.1 806467 807327 D manually curated; KEGG: alv:Alvin_1802 hypothetical protein; hypothetical protein 806467..807327 Alicycliphilus denitrificans BC 10102791 YP_004125416.1 CDS Alide_0763 NC_014910.1 807433 808191 R PFAM: protein of unknown function DUF1555; KEGG: ppd:Ppro_2434 hypothetical protein; hypothetical protein complement(807433..808191) Alicycliphilus denitrificans BC 10102792 YP_004125417.1 CDS Alide_0764 NC_014910.1 808386 809228 R KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family protein; TIGRFAM: hydrolase, ortholog 1, exosortase system type 1 associated; PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase complement(808386..809228) Alicycliphilus denitrificans BC 10102793 YP_004125418.1 CDS Alide_0765 NC_014910.1 809225 810079 R TIGRFAM: hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: app:CAP2UW1_4344 hydrolase, exosortase system type 1 associated; alpha/beta hydrolase complement(809225..810079) Alicycliphilus denitrificans BC 10102794 YP_004125419.1 CDS Alide_0766 NC_014910.1 810081 810341 R KEGG: rfr:Rfer_0698 hypothetical protein; hypothetical protein complement(810081..810341) Alicycliphilus denitrificans BC 10102795 YP_004125420.1 CDS Alide_0767 NC_014910.1 810425 812071 D KEGG: app:CAP2UW1_1626 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase and ligase; acyl-CoA ligase 810425..812071 Alicycliphilus denitrificans BC 10102796 YP_004125421.1 CDS Alide_0768 NC_014910.1 812058 813263 D KEGG: rfr:Rfer_0700 Orn/DAP/Arg decarboxylase 2; TIGRFAM: pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2; pyridoxal-dependent decarboxylase, exosortase system type 1 associated 812058..813263 Alicycliphilus denitrificans BC 10102797 YP_004125422.1 CDS Alide_0769 NC_014910.1 813266 815347 D TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rfr:Rfer_0703 periplasmic sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; pep-cterm system histidine kinase 813266..815347 Alicycliphilus denitrificans BC 10102798 YP_004125423.1 CDS Alide_0770 NC_014910.1 815356 816717 D TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: rfr:Rfer_0704 two component, sigma54 specific, fis family transcriptional regulator; SMART: response regulator receiver; AAA ATPase; pep-cterm system response regulator 815356..816717 Alicycliphilus denitrificans BC 10102799 YP_004125424.1 CDS Alide_0771 NC_014910.1 817007 819787 D KEGG: rfr:Rfer_0705 tetratricopeptide TPR_2; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; pep-cterm system tpr-repeat lipoprotein 817007..819787 Alicycliphilus denitrificans BC 10102800 YP_004125425.1 CDS Alide_0772 NC_014910.1 819837 820616 D KEGG: rfr:Rfer_0710 peptidase S1 and S6, chymotrypsin/Hap; manually curated; PFAM: peptidase S1 and S6 chymotrypsin/Hap; peptidase s1 and s6 chymotrypsin/hap 819837..820616 Alicycliphilus denitrificans BC 10102801 YP_004125426.1 CDS Alide_0773 NC_014910.1 820644 820913 R KEGG: dia:Dtpsy_0625 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor if-1 complement(820644..820913) Alicycliphilus denitrificans BC 10102802 YP_004125427.1 CDS Alide_0774 NC_014910.1 821261 821914 R PFAM: 2OG-Fe(II) oxygenase; KEGG: dia:Dtpsy_0631 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(821261..821914) Alicycliphilus denitrificans BC 10102803 YP_004125428.1 CDS Alide_0775 NC_014910.1 822005 823513 D PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0653 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 822005..823513 Alicycliphilus denitrificans BC 10102804 YP_004125429.1 CDS Alide_0776 NC_014910.1 823610 824329 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ctt:CtCNB1_2425 FAD-binding oxidoreductase; oxidoreductase fad/nad(p)-binding domain-containing protein 823610..824329 Alicycliphilus denitrificans BC 10102805 YP_004125430.1 CDS Alide_0777 NC_014910.1 824323 825903 R KEGG: vap:Vapar_3422 hypothetical protein; hypothetical protein complement(824323..825903) Alicycliphilus denitrificans BC 10102806 YP_004125431.1 CDS Alide_0778 NC_014910.1 825915 826523 R PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; Peptidoglycan-binding domain 1 protein; KEGG: pph:Ppha_2260 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin; peptidase m15b and m15c dd-carboxypeptidase vany/endolysin complement(825915..826523) Alicycliphilus denitrificans BC 10102807 YP_004125432.1 CDS Alide_0779 NC_014910.1 826699 827370 D PFAM: DSBA oxidoreductase; KEGG: ajs:Ajs_0654 DsbA oxidoreductase; dsba oxidoreductase 826699..827370 Alicycliphilus denitrificans BC 10102808 YP_004125433.1 CDS Alide_0780 NC_014910.1 827442 827924 R PFAM: CreA family protein; KEGG: dia:Dtpsy_0634 CreA family protein; crea family protein complement(827442..827924) Alicycliphilus denitrificans BC 10102809 YP_004125434.1 CDS Alide_0781 NC_014910.1 827921 830512 R KEGG: dia:Dtpsy_0635 cyanophycin synthetase; TIGRFAM: cyanophycin synthetase; PFAM: Mur ligase middle domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; cytoplasmic peptidoglycan synthetase domain protein; cyanophycin synthetase complement(827921..830512) Alicycliphilus denitrificans BC 10102810 YP_004125435.1 CDS Alide_0782 NC_014910.1 830584 832764 R TIGRFAM: cyanophycin synthetase; KEGG: ctt:CtCNB1_0610 cyanophycin synthetase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; cyanophycin synthetase complement(830584..832764) Alicycliphilus denitrificans BC 10102811 YP_004125436.1 CDS Alide_0783 NC_014910.1 833014 835326 D manually curated; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dia:Dtpsy_0637 ABC transporter related; SMART: AAA ATPase; ABC transporter 833014..835326 Alicycliphilus denitrificans BC 10102812 YP_004125437.1 CDS Alide_0784 NC_014910.1 835341 835829 D KEGG: dia:Dtpsy_0638 hypothetical protein; hypothetical protein 835341..835829 Alicycliphilus denitrificans BC 10102813 YP_004125438.1 CDS Alide_0785 NC_014910.1 835970 836410 D KEGG: dia:Dtpsy_0639 hypothetical protein; hypothetical protein 835970..836410 Alicycliphilus denitrificans BC 10102814 YP_004125439.1 CDS Alide_0786 NC_014910.1 836534 838588 D KEGG: vap:Vapar_5542 elongation factor G; TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain-containing protein; small gtp-binding protein 836534..838588 Alicycliphilus denitrificans BC 10102815 YP_004125440.1 CDS Alide_0787 NC_014910.1 838602 839534 R KEGG: vei:Veis_1630 5-nucleotidase; PFAM: 5-nucleotidase; 5'-nucleotidase complement(838602..839534) Alicycliphilus denitrificans BC 10102816 YP_004125441.1 CDS Alide_0788 NC_014910.1 839539 840768 R KEGG: dia:Dtpsy_0642 general secretion pathway protein F; TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain; general secretion pathway protein f complement(839539..840768) Alicycliphilus denitrificans BC 10102817 YP_004125442.1 CDS Alide_0789 NC_014910.1 840823 841818 R KEGG: ajs:Ajs_0664 luciferase family protein; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup; luciferase family oxidoreductase complement(840823..841818) Alicycliphilus denitrificans BC 10102818 YP_004125443.1 CDS Alide_0790 NC_014910.1 842007 842534 D KEGG: ajs:Ajs_0665 hypothetical protein; hypothetical protein 842007..842534 Alicycliphilus denitrificans BC 10102819 YP_004125444.1 CDS Alide_0791 NC_014910.1 842544 843944 R TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; KEGG: dia:Dtpsy_0645 general secretory pathway protein E; SMART: AAA ATPase; general secretory pathway protein e complement(842544..843944) Alicycliphilus denitrificans BC 10102820 YP_004125445.1 CDS Alide_0792 NC_014910.1 843955 846288 R KEGG: dia:Dtpsy_0646 general secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein d complement(843955..846288) Alicycliphilus denitrificans BC 10102821 YP_004125446.1 CDS Alide_0793 NC_014910.1 846293 847108 R KEGG: ajs:Ajs_0668 general secretory pathway N transmembrane protein; general secretory pathway n transmembrane protein complement(846293..847108) Alicycliphilus denitrificans BC 10102822 YP_004125447.1 CDS Alide_0794 NC_014910.1 847142 847651 R PFAM: General secretion pathway M protein; KEGG: ajs:Ajs_0669 hypothetical protein; general secretion pathway m protein complement(847142..847651) Alicycliphilus denitrificans BC 10102823 YP_004125448.1 CDS Alide_0795 NC_014910.1 847648 848880 R PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L; general secretion pathway l complement(847648..848880) Alicycliphilus denitrificans BC 10102824 YP_004125449.1 CDS Alide_0796 NC_014910.1 848948 849925 R KEGG: ajs:Ajs_0671 general secretion pathway protein K; general secretion pathway protein k complement(848948..849925) Alicycliphilus denitrificans BC 10102825 YP_004125450.1 CDS Alide_0797 NC_014910.1 849922 850611 R KEGG: ajs:Ajs_0672 hypothetical protein; hypothetical protein complement(849922..850611) Alicycliphilus denitrificans BC 10102826 YP_004125451.1 CDS Alide_0798 NC_014910.1 850613 850978 R KEGG: dia:Dtpsy_0652 general secretion pathway protein I; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; general secretion pathway protein i complement(850613..850978) Alicycliphilus denitrificans BC 10102827 YP_004125452.1 CDS Alide_0799 NC_014910.1 851247 851756 R KEGG: dia:Dtpsy_0653 general secretion pathway protein H; manually curated; TIGRFAM: general secretion pathway protein H; general secretion pathway protein h complement(851247..851756) Alicycliphilus denitrificans BC 10102828 YP_004125453.1 CDS Alide_0800 NC_014910.1 851784 852191 R KEGG: aav:Aave_0925 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein g complement(851784..852191) Alicycliphilus denitrificans BC 10102829 YP_004125454.1 CDS Alide_0801 NC_014910.1 852292 852738 D KEGG: dia:Dtpsy_0655 hypothetical protein; hypothetical protein 852292..852738 Alicycliphilus denitrificans BC 10102830 YP_004125455.1 CDS Alide_0802 NC_014910.1 852739 853305 R PFAM: Phosphoglycerate mutase; KEGG: dia:Dtpsy_0656 phosphoglycerate mutase; phosphoglycerate mutase complement(852739..853305) Alicycliphilus denitrificans BC 10102831 YP_004125456.1 CDS Alide_0803 NC_014910.1 853302 854120 R PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dia:Dtpsy_0657 cobalamin-5-phosphate synthase CobS; cobalamin-5-phosphate synthase cobs complement(853302..854120) Alicycliphilus denitrificans BC 10102832 YP_004125457.1 CDS Alide_0804 NC_014910.1 854183 855748 R KEGG: dia:Dtpsy_0658 threonine dehydratase; TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Threonine dehydratase domain-containing protein; threonine dehydratase, biosynthetic complement(854183..855748) Alicycliphilus denitrificans BC 10102833 YP_004125458.1 CDS Alide_0805 NC_014910.1 856030 856479 D PFAM: OsmC family protein; KEGG: dia:Dtpsy_0659 OsmC family protein; osmc family protein 856030..856479 Alicycliphilus denitrificans BC 10102834 YP_004125459.1 CDS Alide_0806 NC_014910.1 856490 857107 R KEGG: dia:Dtpsy_0660 ubiquinone biosynthesis protein; ubiquinone biosynthesis protein complement(856490..857107) Alicycliphilus denitrificans BC 10102835 YP_004125460.1 CDS Alide_0807 NC_014910.1 857336 858376 D PFAM: porin Gram-negative type; KEGG: aav:Aave_0932 porin; porin 857336..858376 Alicycliphilus denitrificans BC 10102836 YP_004125461.1 CDS Alide_0808 NC_014910.1 858598 859809 D PFAM: porin Gram-negative type; KEGG: dia:Dtpsy_0662 porin gram-negative type; porin 858598..859809 Alicycliphilus denitrificans BC 10102837 YP_004125462.1 CDS Alide_0809 NC_014910.1 860058 861041 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0664 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 860058..861041 Alicycliphilus denitrificans BC 10102838 YP_004125463.1 CDS Alide_0810 NC_014910.1 861043 862263 D TIGRFAM: amidohydrolase; KEGG: dia:Dtpsy_0665 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 861043..862263 Alicycliphilus denitrificans BC 10102839 YP_004125464.1 CDS Alide_0811 NC_014910.1 862341 863252 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0667 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 862341..863252 Alicycliphilus denitrificans BC 10102840 YP_004125465.1 CDS Alide_0812 NC_014910.1 863259 864233 D TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dia:Dtpsy_0668 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 863259..864233 Alicycliphilus denitrificans BC 10102841 YP_004125466.1 CDS Alide_0813 NC_014910.1 864230 865246 D TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dia:Dtpsy_0669 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 864230..865246 Alicycliphilus denitrificans BC 10102842 YP_004125467.1 CDS Alide_0814 NC_014910.1 865289 865783 D PFAM: PEBP family protein; KEGG: dia:Dtpsy_0671 PEBP family protein; pebp family protein 865289..865783 Alicycliphilus denitrificans BC 10102843 YP_004125468.1 CDS Alide_0815 NC_014910.1 865835 866680 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ajs:Ajs_0694 RpiR family transcriptional regulator; helix-turn-helix protein rpir complement(865835..866680) Alicycliphilus denitrificans BC 10102844 YP_004125469.1 CDS Alide_0816 NC_014910.1 866796 867746 D KEGG: dia:Dtpsy_0674 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 866796..867746 Alicycliphilus denitrificans BC 10102845 YP_004125470.1 CDS Alide_0817 NC_014910.1 867743 869338 D KEGG: ajs:Ajs_0697 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase 867743..869338 Alicycliphilus denitrificans BC 10102846 YP_004125471.1 CDS Alide_0818 NC_014910.1 869461 871107 R KEGG: aav:Aave_0945 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; molecular chaperone GroEL complement(869461..871107) Alicycliphilus denitrificans BC 10102847 YP_004125472.1 CDS Alide_0819 NC_014910.1 871205 871495 R PFAM: Chaperonin Cpn10; KEGG: dac:Daci_5660 co-chaperonin GroES; chaperonin cpn10 complement(871205..871495) Alicycliphilus denitrificans BC 10102848 YP_004125473.1 CDS Alide_0820 NC_014910.1 871697 872725 R KEGG: ajs:Ajs_0701 cytidyltransferase-like protein; TIGRFAM: cytidyltransferase-related domain protein; PFAM: NUDIX hydrolase; cytidylyltransferase; cytidyltransferase complement(871697..872725) Alicycliphilus denitrificans BC 10102849 YP_004125474.1 CDS Alide_0821 NC_014910.1 872739 873920 R TIGRFAM: S-adenosylmethionine synthetase; KEGG: dia:Dtpsy_0683 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; s-adenosylmethionine synthetase complement(872739..873920) Alicycliphilus denitrificans BC 10102850 YP_004125475.1 CDS Alide_0822 NC_014910.1 874054 874908 D PFAM: lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0706 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 874054..874908 Alicycliphilus denitrificans BC 10102851 YP_004125476.1 CDS Alide_0823 NC_014910.1 874905 875786 D PFAM: lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0707 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 874905..875786 Alicycliphilus denitrificans BC 10102852 YP_004125477.1 CDS Alide_0824 NC_014910.1 875827 876729 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_1352 LysR family transcriptional regulator; LysR family transcriptional regulator complement(875827..876729) Alicycliphilus denitrificans BC 10102853 YP_004125478.1 CDS Alide_0825 NC_014910.1 876826 877806 D KEGG: vei:Veis_1351 fis family transcriptional regulator; Fis family transcriptional regulator 876826..877806 Alicycliphilus denitrificans BC 10102854 YP_004125479.1 CDS Alide_0826 NC_014910.1 877821 878801 D KEGG: cti:RALTA_B1946 conserved hypothetical protein UPF0065; hypothetical protein 877821..878801 Alicycliphilus denitrificans BC 10102855 YP_004125480.1 CDS Alide_0827 NC_014910.1 878828 879889 D KEGG: vei:Veis_1349 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 878828..879889 Alicycliphilus denitrificans BC 10102856 YP_004125481.1 CDS Alide_0828 NC_014910.1 879889 880701 D PFAM: amidohydrolase 2; KEGG: bbt:BBta_3003 hypothetical protein; amidohydrolase 879889..880701 Alicycliphilus denitrificans BC 10102857 YP_004125482.1 CDS Alide_0829 NC_014910.1 880689 881381 R KEGG: aav:Aave_0983 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; ribosome biogenesis gtp-binding protein ysxc complement(880689..881381) Alicycliphilus denitrificans BC 10102858 YP_004125483.1 CDS Alide_0830 NC_014910.1 881464 882102 D PFAM: cytochrome c class I; KEGG: ajs:Ajs_0710 cytochrome c, class I; cytochrome c class i 881464..882102 Alicycliphilus denitrificans BC 10102859 YP_004125484.1 CDS Alide_0831 NC_014910.1 882231 884429 D KEGG: dia:Dtpsy_0691 ResB family protein; resb family protein 882231..884429 Alicycliphilus denitrificans BC 10102860 YP_004125485.1 CDS Alide_0832 NC_014910.1 884426 885760 D KEGG: ajs:Ajs_0712 cytochrome c assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; cytochrome c-type biogenesis protein ccsb 884426..885760 Alicycliphilus denitrificans BC 10102861 YP_004125486.1 CDS Alide_0833 NC_014910.1 885934 886932 D PFAM: oxidoreductase molybdopterin binding; KEGG: dia:Dtpsy_0693 sulfite oxidase subunit YedY; oxidoreductase molybdopterin binding protein 885934..886932 Alicycliphilus denitrificans BC 10102862 YP_004125487.1 CDS Alide_0834 NC_014910.1 886932 887573 D PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: dia:Dtpsy_0694 ferric reductase domain protein transmembrane component; ferric reductase 886932..887573 Alicycliphilus denitrificans BC 10102863 YP_004125488.1 CDS Alide_0835 NC_014910.1 887659 888462 R KEGG: dia:Dtpsy_0695 beta-lactamase domain protein; beta-lactamase complement(887659..888462) Alicycliphilus denitrificans BC 10102864 YP_004125489.1 CDS Alide_0836 NC_014910.1 888531 889820 R KEGG: dia:Dtpsy_0696 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase complement(888531..889820) Alicycliphilus denitrificans BC 10102865 YP_004125490.1 CDS Alide_0837 NC_014910.1 889817 890029 R manually curated; KEGG: ajs:Ajs_0717 hypothetical protein; hypothetical protein complement(889817..890029) Alicycliphilus denitrificans BC 10102866 YP_004125491.1 CDS Alide_0838 NC_014910.1 890042 890371 D KEGG: ajs:Ajs_0728 frataxin family protein; TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; iron donor protein cyay 890042..890371 Alicycliphilus denitrificans BC 10102867 YP_004125492.1 CDS Alide_0839 NC_014910.1 890378 892693 R KEGG: dia:Dtpsy_0698 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein, 1a family complement(890378..892693) Alicycliphilus denitrificans BC 10102868 YP_004125493.1 CDS Alide_0840 NC_014910.1 893020 894090 D TIGRFAM: type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM; type IV pilus assembly protein pilm 893020..894090 Alicycliphilus denitrificans BC 10102869 YP_004125494.1 CDS Alide_0841 NC_014910.1 894087 894698 D PFAM: Fimbrial assembly family protein; KEGG: ajs:Ajs_0731 fimbrial assembly family protein; fimbrial assembly family protein 894087..894698 Alicycliphilus denitrificans BC 10102870 YP_004125495.1 CDS Alide_0842 NC_014910.1 894695 895378 D KEGG: ajs:Ajs_0732 pilus assembly protein, PilO; pilus assembly protein, pilo 894695..895378 Alicycliphilus denitrificans BC 10102871 YP_004125496.1 CDS Alide_0843 NC_014910.1 895375 895932 D PFAM: Pilus assembly protein PilP; KEGG: dia:Dtpsy_0702 pilus assembly protein PilP; pilus assembly protein pilp 895375..895932 Alicycliphilus denitrificans BC 10102872 YP_004125497.1 CDS Alide_0844 NC_014910.1 895929 898070 D KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; type IV pilus secretin pilq 895929..898070 Alicycliphilus denitrificans BC 10102873 YP_004125498.1 CDS Alide_0845 NC_014910.1 898092 899639 D PFAM: Ig family protein; KEGG: eba:ebA2288 hypothetical protein; ig family protein 898092..899639 Alicycliphilus denitrificans BC 10102874 YP_004125499.1 CDS Alide_0846 NC_014910.1 899763 900881 D TIGRFAM: 3-dehydroquinate synthase; KEGG: dia:Dtpsy_0704 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; 3-dehydroquinate synthase 899763..900881 Alicycliphilus denitrificans BC 10102875 YP_004125500.1 CDS Alide_0847 NC_014910.1 900939 902111 D TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ajs:Ajs_0736 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase 900939..902111 Alicycliphilus denitrificans BC 10102876 YP_004125501.1 CDS Alide_0848 NC_014910.1 902143 902763 D PFAM: protein of unknown function DUF1415; KEGG: dia:Dtpsy_0706 protein of unknown function DUF1415; hypothetical protein 902143..902763 Alicycliphilus denitrificans BC 10102877 YP_004125502.1 CDS Alide_0849 NC_014910.1 902760 903632 D KEGG: dia:Dtpsy_0707 hypothetical protein; hypothetical protein 902760..903632 Alicycliphilus denitrificans BC 10102878 YP_004125503.1 CDS Alide_0850 NC_014910.1 903748 905253 R KEGG: hse:Hsero_3067 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(903748..905253) Alicycliphilus denitrificans BC 10102879 YP_004125504.1 CDS Alide_0851 NC_014910.1 905268 906485 R KEGG: hse:Hsero_3068 branched-chain amino acid ABC transporter periplasmic protein; branched-chain amino acid abc transporter substrate-binding protein complement(905268..906485) Alicycliphilus denitrificans BC 10102880 YP_004125505.1 CDS Alide_0852 NC_014910.1 906619 907545 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: hse:Hsero_3069 LysR family transcription regulator protein; LysR family transcriptional regulator 906619..907545 Alicycliphilus denitrificans BC 10102881 YP_004125506.1 CDS Alide_0853 NC_014910.1 907612 908322 D KEGG: vap:Vapar_1151 protein of unknown function DUF1568; hypothetical protein 907612..908322 Alicycliphilus denitrificans BC 10102882 YP_004125507.1 CDS Alide_0854 NC_014910.1 908492 913225 D KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase 908492..913225 Alicycliphilus denitrificans BC 10102883 YP_004125508.1 CDS Alide_0855 NC_014910.1 913266 914744 D KEGG: dia:Dtpsy_0710 glutamate synthase subunit beta; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase, NADH/nadph, small subunit 913266..914744 Alicycliphilus denitrificans BC 10102884 YP_004125509.1 CDS Alide_0856 NC_014910.1 914949 915746 D KEGG: ajs:Ajs_0743 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; ABC transporter substrate-binding protein 914949..915746 Alicycliphilus denitrificans BC 10102885 YP_004125510.1 CDS Alide_0857 NC_014910.1 915808 916464 D KEGG: ajs:Ajs_0744 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 915808..916464 Alicycliphilus denitrificans BC 10102886 YP_004125511.1 CDS Alide_0858 NC_014910.1 916445 917224 D KEGG: dia:Dtpsy_0713 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 916445..917224 Alicycliphilus denitrificans BC 10102887 YP_004125512.1 CDS Alide_0859 NC_014910.1 917248 918552 D KEGG: vei:Veis_4017 hypothetical protein; hypothetical protein 917248..918552 Alicycliphilus denitrificans BC 10102888 YP_004125513.1 CDS Alide_0860 NC_014910.1 918654 919613 R KEGG: ajs:Ajs_0746 spermidine synthase; PFAM: Spermine synthase; spermidine synthase complement(918654..919613) Alicycliphilus denitrificans BC 10102889 YP_004125514.1 CDS Alide_0861 NC_014910.1 919613 920023 R KEGG: dia:Dtpsy_0715 S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; s-adenosylmethionine decarboxylase proenzyme complement(919613..920023) Alicycliphilus denitrificans BC 10102890 YP_004125515.1 CDS Alide_0862 NC_014910.1 920390 921238 D KEGG: dia:Dtpsy_0716 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 920390..921238 Alicycliphilus denitrificans BC 10102891 YP_004125516.1 CDS Alide_0863 NC_014910.1 921235 922017 D PFAM: protein of unknown function DUF140; KEGG: dia:Dtpsy_0717 protein of unknown function DUF140; hypothetical protein 921235..922017 Alicycliphilus denitrificans BC 10102892 YP_004125517.1 CDS Alide_0864 NC_014910.1 922052 922540 D PFAM: Mammalian cell entry related domain protein; KEGG: dia:Dtpsy_0718 mammalian cell entry related domain protein; mammalian cell entry related domain-containing protein 922052..922540 Alicycliphilus denitrificans BC 10102893 YP_004125518.1 CDS Alide_0865 NC_014910.1 922537 923277 D PFAM: VacJ family lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein; vacj family lipoprotein 922537..923277 Alicycliphilus denitrificans BC 10102894 YP_004125519.1 CDS Alide_0866 NC_014910.1 923395 924057 D PFAM: toluene tolerance family protein; KEGG: dia:Dtpsy_0720 toluene tolerance family protein; toluene tolerance family protein 923395..924057 Alicycliphilus denitrificans BC 10102895 YP_004125520.1 CDS Alide_0867 NC_014910.1 924075 924347 D KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist stas 924075..924347 Alicycliphilus denitrificans BC 10102896 YP_004125521.1 CDS Alide_0868 NC_014910.1 924411 925706 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: cps:CPS_0452 sensory box protein; SMART: GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase 924411..925706 Alicycliphilus denitrificans BC 10102897 YP_004125522.1 CDS Alide_0869 NC_014910.1 925788 926708 D KEGG: dia:Dtpsy_0722 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 925788..926708 Alicycliphilus denitrificans BC 10102898 YP_004125523.1 CDS Alide_0870 NC_014910.1 926705 927460 D PFAM: ABC transporter; KEGG: aav:Aave_1020 ABC transporter; ABC transporter 926705..927460 Alicycliphilus denitrificans BC 10102899 YP_004125524.1 CDS Alide_0871 NC_014910.1 927474 927722 D PFAM: BolA family protein; KEGG: dia:Dtpsy_0724 BolA family protein; bola family protein 927474..927722 Alicycliphilus denitrificans BC 10102900 YP_004125525.1 CDS Alide_0872 NC_014910.1 927747 929021 D KEGG: ctt:CtCNB1_0710 UDP-N-acetylglucosamine; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); udp-n-acetylglucosamine 1-carboxyvinyltransferase 927747..929021 Alicycliphilus denitrificans BC 10102901 YP_004125526.1 CDS Alide_0873 NC_014910.1 929018 929668 D TIGRFAM: ATP phosphoribosyltransferase; KEGG: dia:Dtpsy_0726 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase 929018..929668 Alicycliphilus denitrificans BC 10102902 YP_004125527.1 CDS Alide_0874 NC_014910.1 929673 930989 D TIGRFAM: histidinol dehydrogenase; KEGG: aav:Aave_1024 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; histidinol dehydrogenase 929673..930989 Alicycliphilus denitrificans BC 10102903 YP_004125528.1 CDS Alide_0875 NC_014910.1 931108 931386 D KEGG: dac:Daci_5523 hypothetical protein; hypothetical protein 931108..931386 Alicycliphilus denitrificans BC 10102904 YP_004125529.1 CDS Alide_0876 NC_014910.1 931383 931835 D KEGG: ctt:CtCNB1_0716 hypothetical protein; hypothetical protein 931383..931835 Alicycliphilus denitrificans BC 10102905 YP_004125530.1 CDS Alide_0877 NC_014910.1 931853 932971 D KEGG: dia:Dtpsy_0729 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; histidinol-phosphate aminotransferase 931853..932971 Alicycliphilus denitrificans BC 10102906 YP_004125531.1 CDS Alide_0878 NC_014910.1 932968 933600 D KEGG: dia:Dtpsy_0730 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 932968..933600 Alicycliphilus denitrificans BC 10102907 YP_004125532.1 CDS Alide_0879 NC_014910.1 933651 934319 D KEGG: dia:Dtpsy_0731 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 933651..934319 Alicycliphilus denitrificans BC 10102908 YP_004125533.1 CDS Alide_0880 NC_014910.1 934372 935115 D TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: ajs:Ajs_0765 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 934372..935115 Alicycliphilus denitrificans BC 10102909 YP_004125534.1 CDS Alide_0881 NC_014910.1 935122 936318 R KEGG: ajs:Ajs_0766 hypothetical protein; hypothetical protein complement(935122..936318) Alicycliphilus denitrificans BC 10102910 YP_004125535.1 CDS Alide_0882 NC_014910.1 936386 937759 R KEGG: ajs:Ajs_0767 transmembrane protein; transmembrane protein complement(936386..937759) Alicycliphilus denitrificans BC 10102911 YP_004125536.1 CDS Alide_0883 NC_014910.1 937759 939291 R PFAM: glycosyl transferase group 1; KEGG: ajs:Ajs_0768 glycosyl transferase, group 1; group 1 glycosyl transferase complement(937759..939291) Alicycliphilus denitrificans BC 10102912 YP_004125537.1 CDS Alide_0884 NC_014910.1 939288 940289 R KEGG: ajs:Ajs_0769 transmembrane protein; transmembrane protein complement(939288..940289) Alicycliphilus denitrificans BC 10102913 YP_004125538.1 CDS Alide_0885 NC_014910.1 940282 941676 R KEGG: ajs:Ajs_0770 transmembrane protein; transmembrane protein complement(940282..941676) Alicycliphilus denitrificans BC 10102914 YP_004125539.1 CDS Alide_0886 NC_014910.1 941684 942238 R KEGG: ajs:Ajs_0771 lipoprotein; lipoprotein complement(941684..942238) Alicycliphilus denitrificans BC 10102915 YP_004125540.1 CDS Alide_0887 NC_014910.1 942260 946063 R KEGG: ajs:Ajs_0772 TPR repeat-containing protein; tpr repeat-containing protein complement(942260..946063) Alicycliphilus denitrificans BC 10102916 YP_004125541.1 CDS Alide_0888 NC_014910.1 946110 948941 R PFAM: TM1410 hypothetical protein-related protein; polysaccharide deacetylase; KEGG: ajs:Ajs_0773 polysaccharide deacetylase; hypothetical protein complement(946110..948941) Alicycliphilus denitrificans BC 10102917 YP_004125542.1 CDS Alide_0889 NC_014910.1 949114 950130 D KEGG: ajs:Ajs_0774 UDP-galactose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; udp-glucose 4-epimerase 949114..950130 Alicycliphilus denitrificans BC 10102918 YP_004125543.1 CDS Alide_0890 NC_014910.1 950171 950950 D KEGG: dia:Dtpsy_0738 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; Imidazole glycerol phosphate synthase cyclase subunit 950171..950950 Alicycliphilus denitrificans BC 10102919 YP_004125544.1 CDS Alide_0891 NC_014910.1 951057 951446 D KEGG: aav:Aave_1048 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-amp cyclohydrolase 951057..951446 Alicycliphilus denitrificans BC 10102920 YP_004125545.1 CDS Alide_0892 NC_014910.1 951451 951828 D KEGG: dia:Dtpsy_0740 phosphoribosyl-ATP pyrophosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; phosphoribosyl-ATP diphosphatase 951451..951828 Alicycliphilus denitrificans BC 10102921 YP_004125546.1 CDS Alide_0893 NC_014910.1 951825 952211 D KEGG: dia:Dtpsy_0741 transmembrane protein; transmembrane protein 951825..952211 Alicycliphilus denitrificans BC 10102922 YP_004125547.1 CDS Alide_0894 NC_014910.1 952204 953232 D PFAM: Patatin; KEGG: ajs:Ajs_0779 patatin; patatin 952204..953232 Alicycliphilus denitrificans BC 10102923 YP_004125548.1 CDS Alide_0895 NC_014910.1 953271 953627 D PFAM: histidine triad (HIT) protein; KEGG: dia:Dtpsy_0743 histidine triad (HIT) protein; histidine triad (hit) protein 953271..953627 Alicycliphilus denitrificans BC 10102924 YP_004125549.1 CDS Alide_0896 NC_014910.1 953728 953976 D KEGG: ajs:Ajs_0781 twin arginine translocase protein A; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, tata/e family subunit 953728..953976 Alicycliphilus denitrificans BC 10102925 YP_004125550.1 CDS Alide_0897 NC_014910.1 954002 954481 D KEGG: dia:Dtpsy_0745 sec-independent translocase; TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, tatb subunit 954002..954481 Alicycliphilus denitrificans BC 10102926 YP_004125551.1 CDS Alide_0898 NC_014910.1 954547 955335 D KEGG: dia:Dtpsy_0746 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; sec-independent protein translocase, tatc subunit 954547..955335 Alicycliphilus denitrificans BC 10102927 YP_004125552.1 CDS Alide_0899 NC_014910.1 955409 956548 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; htra2 peptidase complement(955409..956548) Alicycliphilus denitrificans BC 10102928 YP_004125553.1 CDS Alide_0900 NC_014910.1 956639 957391 D PFAM: protein of unknown function DUF34; KEGG: dia:Dtpsy_0749 protein of unknown function DUF34; hypothetical protein 956639..957391 Alicycliphilus denitrificans BC 10102929 YP_004125554.1 CDS Alide_0901 NC_014910.1 957454 958506 D TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 957454..958506 Alicycliphilus denitrificans BC 10102930 YP_004125555.1 CDS Alide_0902 NC_014910.1 958573 959001 R KEGG: dac:Daci_5504 large-conductance mechanosensitive channel; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein complement(958573..959001) Alicycliphilus denitrificans BC 10102931 YP_004125556.1 CDS Alide_0903 NC_014910.1 959127 959726 D TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit 959127..959726 Alicycliphilus denitrificans BC 10102932 YP_004125557.1 CDS Alide_0904 NC_014910.1 959742 961163 D PFAM: Cytochrome b/b6 domain; KEGG: dia:Dtpsy_0753 cytochrome b/b6 domain protein; cytochrome b/b6 domain-containing protein 959742..961163 Alicycliphilus denitrificans BC 10102933 YP_004125558.1 CDS Alide_0905 NC_014910.1 961180 961935 D KEGG: ajs:Ajs_0791 cytochrome c1; manually curated; PFAM: cytochrome c1; cytochrome c1 961180..961935 Alicycliphilus denitrificans BC 10102934 YP_004125559.1 CDS Alide_0906 NC_014910.1 962034 962645 D PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_0755 glutathione S-transferase domain protein; glutathione s-transferase domain-containing protein 962034..962645 Alicycliphilus denitrificans BC 10102935 YP_004125560.1 CDS Alide_0907 NC_014910.1 962678 963202 D PFAM: Stringent starvation protein B; KEGG: dia:Dtpsy_0756 stringent starvation protein B; stringent starvation protein b 962678..963202 Alicycliphilus denitrificans BC 10102936 YP_004125561.1 CDS Alide_0908 NC_014910.1 963385 963684 R KEGG: dia:Dtpsy_0757 hypothetical protein; hypothetical protein complement(963385..963684) Alicycliphilus denitrificans BC 10102938 YP_004125562.1 CDS Alide_0909 NC_014910.1 963926 966685 D KEGG: dia:Dtpsy_0759 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein; preprotein translocase, seca subunit 963926..966685 Alicycliphilus denitrificans BC 10102939 YP_004125563.1 CDS Alide_0910 NC_014910.1 966761 967990 D TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: ajs:Ajs_0797 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 966761..967990 Alicycliphilus denitrificans BC 10102940 YP_004125564.1 CDS Alide_0911 NC_014910.1 968045 968917 D PFAM: protein of unknown function DUF815; KEGG: dia:Dtpsy_0761 protein of unknown function DUF815; hypothetical protein 968045..968917 Alicycliphilus denitrificans BC 10102941 YP_004125565.1 CDS Alide_0912 NC_014910.1 968914 969339 D PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_0762 NUDIX hydrolase; nudix hydrolase 968914..969339 Alicycliphilus denitrificans BC 10102942 YP_004125566.1 CDS Alide_0913 NC_014910.1 969402 969608 R PFAM: protein of unknown function DUF329; KEGG: dia:Dtpsy_0763 protein of unknown function DUF329; hypothetical protein complement(969402..969608) Alicycliphilus denitrificans BC 10102943 YP_004125567.1 CDS Alide_0914 NC_014910.1 969610 970365 R PFAM: protein of unknown function DUF1342; KEGG: dia:Dtpsy_0764 hypothetical protein; hypothetical protein complement(969610..970365) Alicycliphilus denitrificans BC 10102944 YP_004125568.1 CDS Alide_0915 NC_014910.1 970448 971062 R TIGRFAM: dephospho-CoA kinase; KEGG: ajs:Ajs_0802 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(970448..971062) Alicycliphilus denitrificans BC 10102945 YP_004125569.1 CDS Alide_0916 NC_014910.1 971083 971961 R KEGG: dia:Dtpsy_0766 prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; prepilin peptidase complement(971083..971961) Alicycliphilus denitrificans BC 10102946 YP_004125570.1 CDS Alide_0917 NC_014910.1 971961 973178 R PFAM: Type II secretion system F domain; KEGG: ajs:Ajs_0804 type II secretion system protein; type II secretion system f domain-containing protein complement(971961..973178) Alicycliphilus denitrificans BC 10102947 YP_004125571.1 CDS Alide_0918 NC_014910.1 973200 974939 R TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: ajs:Ajs_0805 type IV-A pilus assembly ATPase PilB; SMART: AAA ATPase; type IV-a pilus assembly atpase pilb complement(973200..974939) Alicycliphilus denitrificans BC 10102948 YP_004125572.1 CDS Alide_0919 NC_014910.1 975890 977584 D KEGG: pca:Pcar_1822 DNA primase; hypothetical protein 975890..977584 Alicycliphilus denitrificans BC 10102949 YP_004125573.1 CDS Alide_0920 NC_014910.1 977965 978924 R KEGG: lch:Lcho_1774 hypothetical protein; hypothetical protein complement(977965..978924) Alicycliphilus denitrificans BC 10102950 YP_004125574.1 CDS Alide_0921 NC_014910.1 979080 979994 R PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein complement(979080..979994) Alicycliphilus denitrificans BC 10102951 YP_004125575.1 CDS Alide_0922 NC_014910.1 979991 980314 R PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein complement(979991..980314) Alicycliphilus denitrificans BC 10102952 YP_004125576.1 CDS Alide_0923 NC_014910.1 980568 980942 R KEGG: rpf:Rpic12D_2703 DNA binding domain protein, excisionase family; hypothetical protein complement(980568..980942) Alicycliphilus denitrificans BC 10102953 YP_004125577.1 CDS Alide_0924 NC_014910.1 981016 982605 R PFAM: integrase family protein; KEGG: rpf:Rpic12D_2659 integrase family protein; integrase family protein complement(981016..982605) Alicycliphilus denitrificans BC 10102954 YP_004125578.1 CDS Alide_0925 NC_014910.1 982877 983926 R PFAM: Polyprenyl synthetase; KEGG: ajs:Ajs_0840 dimethylallyltranstransferase; polyprenyl synthetase complement(982877..983926) Alicycliphilus denitrificans BC 10102956 YP_004125579.1 CDS Alide_0926 NC_014910.1 984033 984344 D KEGG: ajs:Ajs_0841 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; 50S ribosomal protein L21 984033..984344 Alicycliphilus denitrificans BC 10102957 YP_004125580.1 CDS Alide_0927 NC_014910.1 984360 984617 D KEGG: dia:Dtpsy_0771 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; 50S ribosomal protein L27 984360..984617 Alicycliphilus denitrificans BC 10102958 YP_004125581.1 CDS Alide_0928 NC_014910.1 984743 985816 D KEGG: ajs:Ajs_0843 GTPase ObgE; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; gtp-binding protein obg/cgta 984743..985816 Alicycliphilus denitrificans BC 10102959 YP_004125582.1 CDS Alide_0929 NC_014910.1 985881 987020 D TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: dia:Dtpsy_0773 gamma-glutamyl kinase; SMART: PUA domain containing protein; glutamate 5-kinase 985881..987020 Alicycliphilus denitrificans BC 10102960 YP_004125583.1 CDS Alide_0930 NC_014910.1 987044 987718 R PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_0774 dinucleoside polyphosphate hydrolase; nudix hydrolase complement(987044..987718) Alicycliphilus denitrificans BC 10102961 YP_004125584.1 CDS Alide_0931 NC_014910.1 987820 989565 D KEGG: dia:Dtpsy_0775 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; prolyl-tRNA synthetase 987820..989565 Alicycliphilus denitrificans BC 10102962 YP_004125585.1 CDS Alide_0932 NC_014910.1 989562 990206 D PFAM: Lytic transglycosylase catalytic; KEGG: ajs:Ajs_0847 lytic transglycosylase, catalytic; lytic transglycosylase 989562..990206 Alicycliphilus denitrificans BC 10102963 YP_004125586.1 CDS Alide_0933 NC_014910.1 990182 991516 R PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: dia:Dtpsy_0777 protein of unknown function DUF21; hypothetical protein complement(990182..991516) Alicycliphilus denitrificans BC 10102964 YP_004125587.1 CDS Alide_0934 NC_014910.1 991560 992567 R KEGG: aav:Aave_3667 ATPase central domain-containing protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; ATPase AAA complement(991560..992567) Alicycliphilus denitrificans BC 10102965 YP_004125588.1 CDS Alide_0935 NC_014910.1 992708 993040 R KEGG: dia:Dtpsy_0778 glutaredoxin-like protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; glutaredoxin-like protein complement(992708..993040) Alicycliphilus denitrificans BC 10102966 YP_004125589.1 CDS Alide_0936 NC_014910.1 993097 993942 R KEGG: ajs:Ajs_0850 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-n5) methyltransferase, release factor-specific complement(993097..993942) Alicycliphilus denitrificans BC 10102967 YP_004125590.1 CDS Alide_0937 NC_014910.1 993985 995067 R KEGG: ajs:Ajs_0851 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 1 complement(993985..995067) Alicycliphilus denitrificans BC 10102968 YP_004125591.1 CDS Alide_0938 NC_014910.1 995168 996481 R KEGG: dia:Dtpsy_0781 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase complement(995168..996481) Alicycliphilus denitrificans BC 10102969 YP_004125592.1 CDS Alide_0939 NC_014910.1 996556 996831 D KEGG: dia:Dtpsy_0782 hypothetical protein; hypothetical protein 996556..996831 Alicycliphilus denitrificans BC 10102970 YP_004125593.1 CDS Alide_0940 NC_014910.1 996948 997841 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0783 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(996948..997841) Alicycliphilus denitrificans BC 10102971 YP_004125594.1 CDS Alide_0941 NC_014910.1 997967 998950 D KEGG: ajs:Ajs_0855 hypothetical protein; hypothetical protein 997967..998950 Alicycliphilus denitrificans BC 10102972 YP_004125595.1 CDS Alide_0942 NC_014910.1 998950 999852 D PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase; n-formylglutamate amidohydrolase 998950..999852 Alicycliphilus denitrificans BC 10102973 YP_004125596.1 CDS Alide_0943 NC_014910.1 999896 1002328 R PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel; mscs mechanosensitive ion channel complement(999896..1002328) Alicycliphilus denitrificans BC 10102974 YP_004125597.1 CDS Alide_0944 NC_014910.1 1002357 1003106 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dia:Dtpsy_0787 glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(1002357..1003106) Alicycliphilus denitrificans BC 10102975 YP_004125598.1 CDS Alide_0945 NC_014910.1 1003113 1004120 R KEGG: ctt:CtCNB1_0786 sn-glycerol-3-phosphate transport ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter complement(1003113..1004120) Alicycliphilus denitrificans BC 10102976 YP_004125599.1 CDS Alide_0946 NC_014910.1 1004181 1005029 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0789 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1004181..1005029) Alicycliphilus denitrificans BC 10102977 YP_004125600.1 CDS Alide_0947 NC_014910.1 1005037 1005918 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ctt:CtCNB1_0788 sn-glycerol-3-phosphate transport systempermease protein UgpA; binding-protein-dependent transport system inner membrane protein complement(1005037..1005918) Alicycliphilus denitrificans BC 10102978 YP_004125601.1 CDS Alide_0948 NC_014910.1 1005989 1007302 R PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_0862 extracellular solute-binding protein; ABC transporter substrate-binding protein complement(1005989..1007302) Alicycliphilus denitrificans BC 10102979 YP_004125602.1 CDS Alide_0949 NC_014910.1 1007634 1008863 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: ajs:Ajs_0863 D-3-phosphoglycerate dehydrogenase; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 1007634..1008863 Alicycliphilus denitrificans BC 10102980 YP_004125603.1 CDS Alide_0950 NC_014910.1 1008985 1012905 D PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dia:Dtpsy_0793 FAD linked oxidase domain protein; fad linked oxidase domain-containing protein 1008985..1012905 Alicycliphilus denitrificans BC 10102981 YP_004125604.1 CDS Alide_0951 NC_014910.1 1012902 1013354 D PFAM: histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein; histidine triad (hit) protein 1012902..1013354 Alicycliphilus denitrificans BC 10102982 YP_004125605.1 CDS Alide_0952 NC_014910.1 1013431 1013850 D KEGG: dia:Dtpsy_0795 protein of unknown function DUF971; hypothetical protein 1013431..1013850 Alicycliphilus denitrificans BC 10102983 YP_004125606.1 CDS Alide_0953 NC_014910.1 1013928 1014659 D KEGG: dia:Dtpsy_0796 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 1013928..1014659 Alicycliphilus denitrificans BC 10102984 YP_004125607.1 CDS Alide_0954 NC_014910.1 1014701 1015699 D PFAM: import inner membrane translocase subunit Tim44; KEGG: dia:Dtpsy_0797 import inner membrane translocase subunit Tim44; import inner membrane translocase subunit tim44 1014701..1015699 Alicycliphilus denitrificans BC 10102985 YP_004125608.1 CDS Alide_0955 NC_014910.1 1015774 1016334 D KEGG: dia:Dtpsy_0798 hypothetical protein; hypothetical protein 1015774..1016334 Alicycliphilus denitrificans BC 10102986 YP_004125609.1 CDS Alide_0956 NC_014910.1 1016331 1017896 D KEGG: dia:Dtpsy_0799 ubiquinone biosynthesis protein UbiB; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain-containing protein; 2-polyprenylphenol 6-hydroxylase 1016331..1017896 Alicycliphilus denitrificans BC 10102987 YP_004125610.1 CDS Alide_0957 NC_014910.1 1017948 1019399 D PFAM: Na+/solute symporter; KEGG: dia:Dtpsy_0800 Na+/solute symporter; Na+/solute symporter 1017948..1019399 Alicycliphilus denitrificans BC 10102988 YP_004125611.1 CDS Alide_0958 NC_014910.1 1019462 1019743 D KEGG: dia:Dtpsy_0801 regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; regulatory protein, fmdb family 1019462..1019743 Alicycliphilus denitrificans BC 10102989 YP_004125612.1 CDS Alide_0959 NC_014910.1 1019757 1020380 D PFAM: protein of unknown function DUF502; KEGG: dia:Dtpsy_0802 protein of unknown function DUF502; hypothetical protein 1019757..1020380 Alicycliphilus denitrificans BC 10102990 YP_004125613.1 CDS Alide_0960 NC_014910.1 1020481 1022280 D KEGG: dia:Dtpsy_0803 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; aspartyl-tRNA synthetase 1020481..1022280 Alicycliphilus denitrificans BC 10102991 YP_004125614.1 CDS Alide_0961 NC_014910.1 1022342 1022788 D PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_0805 NUDIX hydrolase; nudix hydrolase 1022342..1022788 Alicycliphilus denitrificans BC 10102992 YP_004125615.1 CDS Alide_0962 NC_014910.1 1022791 1023552 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dia:Dtpsy_0806 endonuclease/exonuclease/phosphatase; hypothetical protein 1022791..1023552 Alicycliphilus denitrificans BC 10102993 YP_004125616.1 CDS Alide_0963 NC_014910.1 1023695 1024924 D KEGG: dia:Dtpsy_0807 phospholipase D/transphosphatidylase; phospholipase d/transphosphatidylase 1023695..1024924 Alicycliphilus denitrificans BC 10102994 YP_004125617.1 CDS Alide_0964 NC_014910.1 1025029 1025754 D KEGG: dia:Dtpsy_0808 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; GTP cyclohydrolase I 1025029..1025754 Alicycliphilus denitrificans BC 10102995 YP_004125618.1 CDS Alide_0965 NC_014910.1 1025756 1026178 D PFAM: BLUF domain protein; KEGG: dia:Dtpsy_0809 BLUF domain protein; bluf domain-containing protein 1025756..1026178 Alicycliphilus denitrificans BC 10102996 YP_004125619.1 CDS Alide_0966 NC_014910.1 1026400 1027281 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dia:Dtpsy_0810 protein of unknown function DUF6 transmembrane; hypothetical protein 1026400..1027281 Alicycliphilus denitrificans BC 10102997 YP_004125620.1 CDS Alide_0967 NC_014910.1 1027311 1029131 D KEGG: dar:Daro_2490 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 1027311..1029131 Alicycliphilus denitrificans BC 10102998 YP_004125621.1 CDS Alide_0968 NC_014910.1 1029128 1029757 D KEGG: dar:Daro_2491 LuxR response regulator receiver; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver 1029128..1029757 Alicycliphilus denitrificans BC 10102999 YP_004125622.1 CDS Alide_0969 NC_014910.1 1029866 1030876 R PFAM: cytochrome c class I; KEGG: azo:azo2669 cytochrome c family protein; cytochrome c class i complement(1029866..1030876) Alicycliphilus denitrificans BC 10103000 YP_004125623.1 CDS Alide_0970 NC_014910.1 1031012 1031869 D KEGG: aav:Aave_3628 hypothetical protein; hypothetical protein 1031012..1031869 Alicycliphilus denitrificans BC 10103001 YP_004125624.1 CDS Alide_0971 NC_014910.1 1032021 1032632 R KEGG: dia:Dtpsy_0813 hypothetical protein; hypothetical protein complement(1032021..1032632) Alicycliphilus denitrificans BC 10103002 YP_004125625.1 CDS Alide_0972 NC_014910.1 1032732 1033388 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0885 lysine exporter protein LysE/YggA; lysine exporter protein (lyse/ygga) 1032732..1033388 Alicycliphilus denitrificans BC 10103003 YP_004125626.1 CDS Alide_0973 NC_014910.1 1033449 1034855 R PFAM: Amidase; KEGG: dia:Dtpsy_0815 amidase; amidase complement(1033449..1034855) Alicycliphilus denitrificans BC 10103004 YP_004125627.1 CDS Alide_0974 NC_014910.1 1034852 1036342 R PFAM: extracellular solute-binding protein family 5; KEGG: dia:Dtpsy_0816 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein complement(1034852..1036342) Alicycliphilus denitrificans BC 10103005 YP_004125628.1 CDS Alide_0975 NC_014910.1 1036448 1037314 R KEGG: dia:Dtpsy_0817 ABC transporter related; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; ABC transporter complement(1036448..1037314) Alicycliphilus denitrificans BC 10103006 YP_004125629.1 CDS Alide_0976 NC_014910.1 1037311 1038285 R TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dia:Dtpsy_0818 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(1037311..1038285) Alicycliphilus denitrificans BC 10103007 YP_004125630.1 CDS Alide_0977 NC_014910.1 1038559 1039422 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0819 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1038559..1039422) Alicycliphilus denitrificans BC 10103008 YP_004125631.1 CDS Alide_0978 NC_014910.1 1039419 1040381 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0820 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1039419..1040381) Alicycliphilus denitrificans BC 10103009 YP_004125632.1 CDS Alide_0979 NC_014910.1 1040526 1040783 D KEGG: dia:Dtpsy_0821 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1040526..1040783 Alicycliphilus denitrificans BC 10103010 YP_004125633.1 CDS Alide_0980 NC_014910.1 1040845 1041474 R TIGRFAM: peptidyl-tRNA hydrolase; KEGG: dia:Dtpsy_0822 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase complement(1040845..1041474) Alicycliphilus denitrificans BC 10103011 YP_004125634.1 CDS Alide_0981 NC_014910.1 1041584 1042210 R KEGG: dia:Dtpsy_0823 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like; ribosomal 5S rRNA e-loop binding protein ctc/l25/tl5 complement(1041584..1042210) Alicycliphilus denitrificans BC 10103012 YP_004125635.1 CDS Alide_0982 NC_014910.1 1042312 1043271 R TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: dia:Dtpsy_0824 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase complement(1042312..1043271) Alicycliphilus denitrificans BC 10103013 YP_004125636.1 CDS Alide_0983 NC_014910.1 1043491 1044357 R TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: ajs:Ajs_0896 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(1043491..1044357) Alicycliphilus denitrificans BC 10103015 YP_004125637.1 CDS Alide_0984 NC_014910.1 1044362 1044859 R PFAM: outer membrane lipoprotein LolB; KEGG: dia:Dtpsy_0826 lipoprotein; molecular chaperone LolB complement(1044362..1044859) Alicycliphilus denitrificans BC 10103016 YP_004125638.1 CDS Alide_0985 NC_014910.1 1044856 1046637 R PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: ajs:Ajs_0898 TPR repeat-containing protein; tetratricopeptide tpr_1 repeat-containing protein complement(1044856..1046637) Alicycliphilus denitrificans BC 10103017 YP_004125639.1 CDS Alide_0986 NC_014910.1 1046667 1047482 D TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: ajs:Ajs_0899 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 1046667..1047482 Alicycliphilus denitrificans BC 10103018 YP_004125640.1 CDS Alide_0987 NC_014910.1 1047552 1049537 D manually curated; KEGG: dia:Dtpsy_0829 hypothetical protein; hypothetical protein 1047552..1049537 Alicycliphilus denitrificans BC 10103019 YP_004125641.1 CDS Alide_0988 NC_014910.1 1049534 1050592 D TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: dia:Dtpsy_0830 A/G-specific adenine glycosylase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; A/G-specific adenine glycosylase 1049534..1050592 Alicycliphilus denitrificans BC 10103020 YP_004125642.1 CDS Alide_0989 NC_014910.1 1050706 1051569 R KEGG: dia:Dtpsy_0831 hypothetical protein; hypothetical protein complement(1050706..1051569) Alicycliphilus denitrificans BC 10103021 YP_004125643.1 CDS Alide_0990 NC_014910.1 1051575 1053248 R KEGG: ajs:Ajs_0903 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; DNA repair protein recn complement(1051575..1053248) Alicycliphilus denitrificans BC 10103022 YP_004125644.1 CDS Alide_0991 NC_014910.1 1053251 1054147 R PFAM: ATP-NAD/AcoX kinase; KEGG: dia:Dtpsy_0833 NAD(+)/NADH kinase family protein; ATP-nad/acox kinase complement(1053251..1054147) Alicycliphilus denitrificans BC 10103023 YP_004125645.1 CDS Alide_0992 NC_014910.1 1054176 1055180 D KEGG: dia:Dtpsy_0847 heat-inducible transcription repressor; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like; heat-inducible transcription repressor hrca 1054176..1055180 Alicycliphilus denitrificans BC 10103024 YP_004125646.1 CDS Alide_0993 NC_014910.1 1055520 1056194 D KEGG: dac:Daci_4429 hypothetical protein; manually curated; PFAM: Dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 1055520..1056194 Alicycliphilus denitrificans BC 10103025 YP_004125647.1 CDS Alide_0994 NC_014910.1 1056191 1057147 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: bxe:Bxe_B0983 2-hydroxyacid dehydrogenase; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 1056191..1057147 Alicycliphilus denitrificans BC 10103026 YP_004125648.1 CDS Alide_0995 NC_014910.1 1057210 1058112 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_3933 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1057210..1058112) Alicycliphilus denitrificans BC 10103027 YP_004125649.1 CDS Alide_0996 NC_014910.1 1058264 1059484 D KEGG: mno:Mnod_0890 aminotransferase class I and II; manually curated; PFAM: aminotransferase class I and II; aminotransferase class i and ii 1058264..1059484 Alicycliphilus denitrificans BC 10103028 YP_004125650.1 CDS Alide_0997 NC_014910.1 1059649 1060347 D KEGG: psp:PSPPH_2462 glutamine ABC transporter, permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1059649..1060347 Alicycliphilus denitrificans BC 10103029 YP_004125651.1 CDS Alide_0998 NC_014910.1 1060350 1061096 D KEGG: vap:Vapar_6370 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1060350..1061096 Alicycliphilus denitrificans BC 10103030 YP_004125652.1 CDS Alide_0999 NC_014910.1 1061107 1061877 D KEGG: rsl:RPSI07_mp0646 amino-acid ATP-binding ABC transporter protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1061107..1061877 Alicycliphilus denitrificans BC 10103031 YP_004125653.1 CDS Alide_1000 NC_014910.1 1061917 1062750 D KEGG: mno:Mnod_0891 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 1061917..1062750 Alicycliphilus denitrificans BC 10103032 YP_004125654.1 CDS Alide_1001 NC_014910.1 1062862 1063722 D KEGG: avi:Avi_7667 ABC transporter substrate binding protein (amino acid); PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 1062862..1063722 Alicycliphilus denitrificans BC 10103033 YP_004125655.1 CDS Alide_1002 NC_014910.1 1063763 1064500 D PFAM: Asp/Glu/hydantoin racemase; KEGG: mno:Mnod_0887 Asp/Glu/hydantoin racemase; asp/glu/hydantoin racemase 1063763..1064500 Alicycliphilus denitrificans BC 10103034 YP_004125656.1 CDS Alide_1003 NC_014910.1 1064520 1064936 D manually curated; KEGG: bbr:BB4733 biotin carboxyl carrier protein of acetyl-CoA carboxylase; biotin carboxyl carrier protein of acetyl-CoA carboxylase 1064520..1064936 Alicycliphilus denitrificans BC 10103035 YP_004125657.1 CDS Alide_1004 NC_014910.1 1064933 1065616 D KEGG: vap:Vapar_6364 allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 1064933..1065616 Alicycliphilus denitrificans BC 10103036 YP_004125658.1 CDS Alide_1005 NC_014910.1 1065613 1066590 D SMART: Allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; KEGG: rsl:RPSI07_mp0640 conserved hypothethical protein, allophanate hydrolase subunit 2 domain; PFAM: Allophanate hydrolase subunit 2; urea amidolyase 1065613..1066590 Alicycliphilus denitrificans BC 10103037 YP_004125659.1 CDS Alide_1006 NC_014910.1 1066603 1067367 D PFAM: LamB/YcsF family protein; KEGG: mno:Mnod_0902 LamB/YcsF family protein; lamb/ycsf family protein 1066603..1067367 Alicycliphilus denitrificans BC 10103038 YP_004125660.1 CDS Alide_1007 NC_014910.1 1067383 1067856 D KEGG: bph:Bphy_2629 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1067383..1067856 Alicycliphilus denitrificans BC 10103039 YP_004125661.1 CDS Alide_1008 NC_014910.1 1067860 1069203 D KEGG: bbr:BB4735 biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; acetyl-CoA carboxylase, biotin carboxylase 1067860..1069203 Alicycliphilus denitrificans BC 10103040 YP_004125662.1 CDS Alide_1009 NC_014910.1 1069795 1070856 D PFAM: Sporulation domain-containing protein; KEGG: aav:Aave_3575 sporulation domain-containing protein; sporulation domain-containing protein 1069795..1070856 Alicycliphilus denitrificans BC 10103041 YP_004125663.1 CDS Alide_1010 NC_014910.1 1070930 1071271 D KEGG: ajs:Ajs_0920 hypothetical protein; hypothetical protein 1070930..1071271 Alicycliphilus denitrificans BC 10103042 YP_004125664.1 CDS Alide_1011 NC_014910.1 1071288 1072523 R TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; KEGG: dia:Dtpsy_0856 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen iii oxidase complement(1071288..1072523) Alicycliphilus denitrificans BC 10103043 YP_004125665.1 CDS Alide_1012 NC_014910.1 1072615 1073232 R KEGG: dia:Dtpsy_0857 deoxyribonucleotide triphosphate pyrophosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; non-canonical purine ntp pyrophosphatase, rdgb/ham1 family complement(1072615..1073232) Alicycliphilus denitrificans BC 10103044 YP_004125666.1 CDS Alide_1013 NC_014910.1 1073278 1074015 R TIGRFAM: ribonuclease PH; KEGG: dia:Dtpsy_0858 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease ph complement(1073278..1074015) Alicycliphilus denitrificans BC 10103045 YP_004125667.1 CDS Alide_1014 NC_014910.1 1074083 1074985 R KEGG: dia:Dtpsy_0859 protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; stage ii sporulation protein e complement(1074083..1074985) Alicycliphilus denitrificans BC 10103046 YP_004125668.1 CDS Alide_1015 NC_014910.1 1074982 1075998 R KEGG: dia:Dtpsy_0860 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; serine/threonine-protein kinase-like domain-containing protein complement(1074982..1075998) Alicycliphilus denitrificans BC 10103047 YP_004125669.1 CDS Alide_1016 NC_014910.1 1076094 1076987 D PFAM: domain of unknown function DUF1732; YicC-like domain-containing protein; KEGG: ajs:Ajs_0926 hypothetical protein; hypothetical protein 1076094..1076987 Alicycliphilus denitrificans BC 10103048 YP_004125670.1 CDS Alide_1017 NC_014910.1 1077019 1080456 R KEGG: cag:Cagg_1487 hypothetical protein; hypothetical protein complement(1077019..1080456) Alicycliphilus denitrificans BC 10103049 YP_004125671.1 CDS Alide_1018 NC_014910.1 1080477 1082774 R KEGG: cag:Cagg_1488 hypothetical protein; hypothetical protein complement(1080477..1082774) Alicycliphilus denitrificans BC 10103050 YP_004125672.1 CDS Alide_1019 NC_014910.1 1082771 1085686 R KEGG: bra:BRADO4376 hypothetical protein; hypothetical protein complement(1082771..1085686) Alicycliphilus denitrificans BC 10103051 YP_004125673.1 CDS Alide_1020 NC_014910.1 1085683 1088175 R KEGG: chl:Chy400_2341 hypothetical protein; hypothetical protein complement(1085683..1088175) Alicycliphilus denitrificans BC 10103052 YP_004125674.1 CDS Alide_1021 NC_014910.1 1088172 1088540 R PFAM: GPW/gp25 family protein; KEGG: cag:Cagg_1491 gpW/GP25 family protein; gpw/gp25 family protein complement(1088172..1088540) Alicycliphilus denitrificans BC 10103053 YP_004125675.1 CDS Alide_1022 NC_014910.1 1088544 1088864 R KEGG: aba:Acid345_0852 hypothetical protein; hypothetical protein complement(1088544..1088864) Alicycliphilus denitrificans BC 10103054 YP_004125676.1 CDS Alide_1023 NC_014910.1 1088875 1089384 R KEGG: nde:NIDE2232 hypothetical protein; hypothetical protein complement(1088875..1089384) Alicycliphilus denitrificans BC 10103055 YP_004125677.1 CDS Alide_1024 NC_014910.1 1089396 1090538 R KEGG: nde:NIDE2231 hypothetical protein; hypothetical protein complement(1089396..1090538) Alicycliphilus denitrificans BC 10103056 YP_004125678.1 CDS Alide_1025 NC_014910.1 1090541 1090903 R KEGG: aba:Acid345_0855 hypothetical protein; hypothetical protein complement(1090541..1090903) Alicycliphilus denitrificans BC 10103057 YP_004125679.1 CDS Alide_1026 NC_014910.1 1090906 1091562 R KEGG: nde:NIDE2229 hypothetical protein; hypothetical protein complement(1090906..1091562) Alicycliphilus denitrificans BC 10103058 YP_004125680.1 CDS Alide_1027 NC_014910.1 1091579 1092934 R KEGG: scl:sce1839 hypothetical protein; hypothetical protein complement(1091579..1092934) Alicycliphilus denitrificans BC 10103059 YP_004125681.1 CDS Alide_1028 NC_014910.1 1093110 1093376 R KEGG: nde:NIDE2225 hypothetical protein; hypothetical protein complement(1093110..1093376) Alicycliphilus denitrificans BC 10103060 YP_004125682.1 CDS Alide_1029 NC_014910.1 1093373 1095898 R KEGG: scl:sce2110 hypothetical protein; hypothetical protein complement(1093373..1095898) Alicycliphilus denitrificans BC 10103061 YP_004125683.1 CDS Alide_1030 NC_014910.1 1095895 1097835 R KEGG: nde:NIDE2224 ATPase; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; ATPase AAA complement(1095895..1097835) Alicycliphilus denitrificans BC 10103062 YP_004125684.1 CDS Alide_1031 NC_014910.1 1097832 1099169 R KEGG: nde:NIDE2223 hypothetical protein; hypothetical protein complement(1097832..1099169) Alicycliphilus denitrificans BC 10103063 YP_004125685.1 CDS Alide_1032 NC_014910.1 1099166 1099906 R KEGG: twh:TWT151 hypothetical protein; hypothetical protein complement(1099166..1099906) Alicycliphilus denitrificans BC 10103064 YP_004125686.1 CDS Alide_1033 NC_014910.1 1099903 1100622 R KEGG: scl:sce2087 hypothetical protein; hypothetical protein complement(1099903..1100622) Alicycliphilus denitrificans BC 10103065 YP_004125687.1 CDS Alide_1034 NC_014910.1 1100639 1101163 R TIGRFAM: conserved hypothetical protein; KEGG: cag:Cagg_1504 hypothetical protein; hypothetical protein complement(1100639..1101163) Alicycliphilus denitrificans BC 10103066 YP_004125688.1 CDS Alide_1035 NC_014910.1 1101179 1103071 R KEGG: nha:Nham_0832 phage tail sheath protein; phage tail sheath protein complement(1101179..1103071) Alicycliphilus denitrificans BC 10103067 YP_004125689.1 CDS Alide_1036 NC_014910.1 1103463 1104083 D SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: dia:Dtpsy_0862 guanylate kinase; PFAM: guanylate kinase; guanylate kinase 1103463..1104083 Alicycliphilus denitrificans BC 10103068 YP_004125690.1 CDS Alide_1037 NC_014910.1 1104103 1104306 D KEGG: dia:Dtpsy_0863 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega 1104103..1104306 Alicycliphilus denitrificans BC 10103069 YP_004125691.1 CDS Alide_1038 NC_014910.1 1104407 1106671 D SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: dia:Dtpsy_0864 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein; rela/spot family protein 1104407..1106671 Alicycliphilus denitrificans BC 10103070 YP_004125692.1 CDS Alide_1039 NC_014910.1 1106678 1107244 R KEGG: ajs:Ajs_0950 transcription elongation factor GreB; TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain-containing protein; transcription elongation factor greb complement(1106678..1107244) Alicycliphilus denitrificans BC 10103071 YP_004125693.1 CDS Alide_1040 NC_014910.1 1107573 1107851 R KEGG: dia:Dtpsy_0866 hypothetical protein; hypothetical protein complement(1107573..1107851) Alicycliphilus denitrificans BC 10103073 YP_004125694.1 CDS Alide_1041 NC_014910.1 1107976 1108332 D KEGG: dia:Dtpsy_0867 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; 30S ribosomal protein S15 1107976..1108332 Alicycliphilus denitrificans BC 10103074 YP_004125695.1 CDS Alide_1042 NC_014910.1 1108563 1110758 D SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: ctt:CtCNB1_1057 3' exoribonuclease; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; polyribonucleotide nucleotidyltransferase 1108563..1110758 Alicycliphilus denitrificans BC 10103075 YP_004125696.1 CDS Alide_1043 NC_014910.1 1110869 1111873 D KEGG: dia:Dtpsy_0869 NAD(P)H quinone oxidoreductase, PIG3 family; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; nad(p)h quinone oxidoreductase, pig3 family 1110869..1111873 Alicycliphilus denitrificans BC 10103076 YP_004125697.1 CDS Alide_1044 NC_014910.1 1111861 1112664 D TIGRFAM: triosephosphate isomerase; KEGG: dia:Dtpsy_0870 triosephosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 1111861..1112664 Alicycliphilus denitrificans BC 10103077 YP_004125698.1 CDS Alide_1045 NC_014910.1 1112661 1113026 D KEGG: dia:Dtpsy_0871 preprotein translocase, SecG subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase, secg subunit 1112661..1113026 Alicycliphilus denitrificans BC 10103078 YP_004125699.1 CDS Alide_1046 NC_014910.1 1113285 1113674 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: ajs:Ajs_0957 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 1113285..1113674 Alicycliphilus denitrificans BC 10103080 YP_004125700.1 CDS Alide_1047 NC_014910.1 1113711 1114190 D TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: dia:Dtpsy_0873 NADH dehydrogenase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase, b subunit 1113711..1114190 Alicycliphilus denitrificans BC 10103081 YP_004125701.1 CDS Alide_1048 NC_014910.1 1114200 1114808 D KEGG: aav:Aave_1265 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or f420h2) dehydrogenase, subunit c 1114200..1114808 Alicycliphilus denitrificans BC 10103082 YP_004125702.1 CDS Alide_1049 NC_014910.1 1114836 1116089 D TIGRFAM: NADH dehydrogenase I, D subunit; KEGG: dia:Dtpsy_0875 NADH dehydrogenase subunit D; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase i, d subunit 1114836..1116089 Alicycliphilus denitrificans BC 10103083 YP_004125703.1 CDS Alide_1050 NC_014910.1 1116086 1116577 D KEGG: dia:Dtpsy_0876 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; NADH-quinone oxidoreductase, e subunit 1116086..1116577 Alicycliphilus denitrificans BC 10103084 YP_004125704.1 CDS Alide_1051 NC_014910.1 1116574 1117923 D TIGRFAM: NADH-quinone oxidoreductase, F subunit; KEGG: dia:Dtpsy_0877 NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH-quinone oxidoreductase, f subunit 1116574..1117923 Alicycliphilus denitrificans BC 10103085 YP_004125705.1 CDS Alide_1052 NC_014910.1 1117939 1120059 D KEGG: aav:Aave_1269 NADH dehydrogenase subunit G; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase; NADH-quinone oxidoreductase subunit g 1117939..1120059 Alicycliphilus denitrificans BC 10103086 YP_004125706.1 CDS Alide_1053 NC_014910.1 1120056 1121132 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dia:Dtpsy_0879 NADH dehydrogenase (quinone); respiratory-chain NADH dehydrogenase subunit 1 1120056..1121132 Alicycliphilus denitrificans BC 10103087 YP_004125707.1 CDS Alide_1054 NC_014910.1 1121149 1121661 D KEGG: dia:Dtpsy_0880 NADH dehydrogenase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; NADH-quinone oxidoreductase subunit i 1121149..1121661 Alicycliphilus denitrificans BC 10103088 YP_004125708.1 CDS Alide_1055 NC_014910.1 1121703 1122371 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: dia:Dtpsy_0881 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 1121703..1122371 Alicycliphilus denitrificans BC 10103089 YP_004125709.1 CDS Alide_1056 NC_014910.1 1122368 1122676 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dia:Dtpsy_0882 NADH-ubiquinone oxidoreductase chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1122368..1122676 Alicycliphilus denitrificans BC 10103090 YP_004125710.1 CDS Alide_1057 NC_014910.1 1122733 1124742 D KEGG: dia:Dtpsy_0883 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit l 1122733..1124742 Alicycliphilus denitrificans BC 10103091 YP_004125711.1 CDS Alide_1058 NC_014910.1 1124756 1126231 D KEGG: dia:Dtpsy_0884 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit m 1124756..1126231 Alicycliphilus denitrificans BC 10103092 YP_004125712.1 CDS Alide_1059 NC_014910.1 1126253 1127749 D KEGG: dia:Dtpsy_0885 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit n 1126253..1127749 Alicycliphilus denitrificans BC 10103093 YP_004125713.1 CDS Alide_1060 NC_014910.1 1127769 1128086 D KEGG: dia:Dtpsy_0886 transmembrane protein; transmembrane protein 1127769..1128086 Alicycliphilus denitrificans BC 10103094 YP_004125714.1 CDS Alide_1061 NC_014910.1 1128097 1128561 D KEGG: dia:Dtpsy_0887 protein of unknown function DUF1178; manually curated; PFAM: protein of unknown function DUF1178; hypothetical protein 1128097..1128561 Alicycliphilus denitrificans BC 10103095 YP_004125715.1 CDS Alide_1062 NC_014910.1 1128568 1128936 R KEGG: ajs:Ajs_0974 hypothetical protein; hypothetical protein complement(1128568..1128936) Alicycliphilus denitrificans BC 10103096 YP_004125716.1 CDS Alide_1063 NC_014910.1 1128980 1130398 R KEGG: ajs:Ajs_0977 glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; glutamate dehydrogenase (nadp(+)) complement(1128980..1130398) Alicycliphilus denitrificans BC 10103097 YP_004125717.1 CDS Alide_1064 NC_014910.1 1130631 1132607 R KEGG: ajs:Ajs_0978 DNA mismatch repair protein MutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; DNA mismatch repair protein mutl complement(1130631..1132607) Alicycliphilus denitrificans BC 10103098 YP_004125718.1 CDS Alide_1065 NC_014910.1 1132615 1132869 R KEGG: dia:Dtpsy_0894 17 kDa surface antigen; hypothetical protein complement(1132615..1132869) Alicycliphilus denitrificans BC 10103099 YP_004125719.1 CDS Alide_1066 NC_014910.1 1133095 1133742 D PFAM: SNARE associated Golgi protein; KEGG: dia:Dtpsy_1467 SNARE associated Golgi protein; hypothetical protein 1133095..1133742 Alicycliphilus denitrificans BC 10103100 YP_004125720.1 CDS Alide_1067 NC_014910.1 1133746 1135026 R KEGG: vap:Vapar_3881 guanine deaminase; TIGRFAM: guanine deaminase; PFAM: amidohydrolase; guanine deaminase complement(1133746..1135026) Alicycliphilus denitrificans BC 10103101 YP_004125721.1 CDS Alide_1068 NC_014910.1 1135031 1136386 R PFAM: Xanthine/uracil/vitamin C permease; KEGG: dac:Daci_5908 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin c permease complement(1135031..1136386) Alicycliphilus denitrificans BC 10103102 YP_004125722.1 CDS Alide_1069 NC_014910.1 1136417 1137430 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vap:Vapar_3905 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1136417..1137430) Alicycliphilus denitrificans BC 10103103 YP_004125723.1 CDS Alide_1070 NC_014910.1 1137427 1139856 R KEGG: vap:Vapar_3906 xanthine dehydrogenase, molybdopterin binding subunit; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; xanthine dehydrogenase molybdopterin binding subunit complement(1137427..1139856) Alicycliphilus denitrificans BC 10103104 YP_004125724.1 CDS Alide_1071 NC_014910.1 1139866 1141425 R KEGG: dac:Daci_5910 xanthine dehydrogenase, small subunit; TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain-containing protein; CO dehydrogenase flavoprotein domain protein; xanthine dehydrogenase small subunit complement(1139866..1141425) Alicycliphilus denitrificans BC 10103105 YP_004125725.1 CDS Alide_1072 NC_014910.1 1141635 1141970 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: har:HEAR2969 hypothetical protein; cupin 2 barrel domain-containing protein complement(1141635..1141970) Alicycliphilus denitrificans BC 10103106 YP_004125726.1 CDS Alide_1073 NC_014910.1 1141995 1143401 R KEGG: ajs:Ajs_0983 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin complement(1141995..1143401) Alicycliphilus denitrificans BC 10103107 YP_004125727.1 CDS Alide_1074 NC_014910.1 1143398 1143907 R KEGG: dia:Dtpsy_0899 protein of unknown function UPF0079; manually curated; PFAM: Uncharacterised protein family UPF0079, ATPase; hypothetical protein complement(1143398..1143907) Alicycliphilus denitrificans BC 10103108 YP_004125728.1 CDS Alide_1076 NC_014910.1 1145031 1145948 R PFAM: Auxin Efflux Carrier; KEGG: dia:Dtpsy_0901 auxin efflux carrier; auxin efflux carrier complement(1145031..1145948) Alicycliphilus denitrificans BC 10103110 YP_004125729.1 CDS Alide_1077 NC_014910.1 1146141 1147106 D KEGG: dia:Dtpsy_0902 hypothetical protein; hypothetical protein 1146141..1147106 Alicycliphilus denitrificans BC 10103111 YP_004125730.1 CDS Alide_1078 NC_014910.1 1147154 1148053 D KEGG: dia:Dtpsy_0903 tyrosine recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; tyrosine recombinase xerd 1147154..1148053 Alicycliphilus denitrificans BC 10103112 YP_004125731.1 CDS Alide_1079 NC_014910.1 1148326 1149387 R KEGG: ctt:CtCNB1_2005 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; pas sensor protein complement(1148326..1149387) Alicycliphilus denitrificans BC 10103113 YP_004125732.1 CDS Alide_1080 NC_014910.1 1149659 1150642 D KEGG: ajs:Ajs_0989 hypothetical protein; hypothetical protein 1149659..1150642 Alicycliphilus denitrificans BC 10103114 YP_004125733.1 CDS Alide_1081 NC_014910.1 1150662 1151948 R KEGG: dia:Dtpsy_0905 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; diguanylate phosphodiesterase complement(1150662..1151948) Alicycliphilus denitrificans BC 10103115 YP_004125734.1 CDS Alide_1082 NC_014910.1 1151986 1153254 R KEGG: dia:Dtpsy_0906 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; diguanylate phosphodiesterase complement(1151986..1153254) Alicycliphilus denitrificans BC 10103116 YP_004125735.1 CDS Alide_1083 NC_014910.1 1153343 1154149 R KEGG: dia:Dtpsy_0907 protein of unknown function DUF455; manually curated; PFAM: protein of unknown function DUF455; hypothetical protein complement(1153343..1154149) Alicycliphilus denitrificans BC 10103117 YP_004125736.1 CDS Alide_1084 NC_014910.1 1154199 1154723 D KEGG: ajs:Ajs_0993 transferase hexapeptide protein; transferase 1154199..1154723 Alicycliphilus denitrificans BC 10103118 YP_004125737.1 CDS Alide_1085 NC_014910.1 1154733 1155719 D PFAM: Hsp33 protein; KEGG: ajs:Ajs_0994 HSP33 protein; hsp33 protein 1154733..1155719 Alicycliphilus denitrificans BC 10103119 YP_004125738.1 CDS Alide_1086 NC_014910.1 1155784 1156545 D KEGG: rfr:Rfer_1525 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; ABC transporter substrate-binding protein 1155784..1156545 Alicycliphilus denitrificans BC 10103120 YP_004125739.1 CDS Alide_1087 NC_014910.1 1156576 1157265 D KEGG: rfr:Rfer_1524 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1156576..1157265 Alicycliphilus denitrificans BC 10103121 YP_004125740.1 CDS Alide_1088 NC_014910.1 1157262 1157975 D KEGG: rfr:Rfer_1523 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1157262..1157975 Alicycliphilus denitrificans BC 10103122 YP_004125741.1 CDS Alide_1089 NC_014910.1 1157986 1158765 D KEGG: rfr:Rfer_1521 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1157986..1158765 Alicycliphilus denitrificans BC 10103123 YP_004125742.1 CDS Alide_1090 NC_014910.1 1158835 1159122 R PFAM: Septum formation initiator; KEGG: dia:Dtpsy_0911 septum formation initiator; septum formation initiator complement(1158835..1159122) Alicycliphilus denitrificans BC 10103124 YP_004125743.1 CDS Alide_1091 NC_014910.1 1159150 1160436 R TIGRFAM: enolase; KEGG: aav:Aave_1322 phosphopyruvate hydratase; PFAM: Enolase-like; enolase complement(1159150..1160436) Alicycliphilus denitrificans BC 10103125 YP_004125744.1 CDS Alide_1092 NC_014910.1 1160619 1160909 R PFAM: protein of unknown function DUF1330; KEGG: dac:Daci_5107 hypothetical protein; hypothetical protein complement(1160619..1160909) Alicycliphilus denitrificans BC 10103126 YP_004125745.1 CDS Alide_1093 NC_014910.1 1160912 1161769 R KEGG: dac:Daci_5106 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1160912..1161769) Alicycliphilus denitrificans BC 10103127 YP_004125746.1 CDS Alide_1094 NC_014910.1 1161775 1163424 R TIGRFAM: CTP synthase; KEGG: dia:Dtpsy_0915 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; ctp synthase complement(1161775..1163424) Alicycliphilus denitrificans BC 10103128 YP_004125747.1 CDS Alide_1095 NC_014910.1 1163500 1164726 D TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: dia:Dtpsy_0916 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1163500..1164726 Alicycliphilus denitrificans BC 10103129 YP_004125748.1 CDS Alide_1096 NC_014910.1 1164723 1165124 D KEGG: vap:Vapar_3441 hypothetical protein; hypothetical protein 1164723..1165124 Alicycliphilus denitrificans BC 10103130 YP_004125749.1 CDS Alide_1097 NC_014910.1 1165193 1165639 D TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: dia:Dtpsy_0917 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase dut 1165193..1165639 Alicycliphilus denitrificans BC 10103131 YP_004125750.1 CDS Alide_1098 NC_014910.1 1165646 1166170 R KEGG: dia:Dtpsy_0919 fkbp-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(1165646..1166170) Alicycliphilus denitrificans BC 10103132 YP_004125751.1 CDS Alide_1099 NC_014910.1 1166224 1167348 D SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: dia:Dtpsy_0920 cupin 4 family protein; transcription factor jumonji jmjc domain-containing protein 1166224..1167348 Alicycliphilus denitrificans BC 10103133 YP_004125752.1 CDS Alide_1100 NC_014910.1 1167365 1167862 D KEGG: dia:Dtpsy_0921 hypothetical protein; hypothetical protein 1167365..1167862 Alicycliphilus denitrificans BC 10103134 YP_004125753.1 CDS Alide_1101 NC_014910.1 1168428 1169516 R KEGG: ajs:Ajs_1009 NlpB/DapX family lipoprotein; nlpb/dapx family lipoprotein complement(1168428..1169516) Alicycliphilus denitrificans BC 10103135 YP_004125754.1 CDS Alide_1102 NC_014910.1 1169551 1170447 R KEGG: dia:Dtpsy_0924 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase complement(1169551..1170447) Alicycliphilus denitrificans BC 10103136 YP_004125755.1 CDS Alide_1103 NC_014910.1 1170456 1170986 R PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_0925 methyltransferase type 12; type 11 methyltransferase complement(1170456..1170986) Alicycliphilus denitrificans BC 10103137 YP_004125756.1 CDS Alide_1104 NC_014910.1 1170986 1171114 R KEGG: ajs:Ajs_1012 hypothetical protein; hypothetical protein complement(1170986..1171114) Alicycliphilus denitrificans BC 10103138 YP_004125757.1 CDS Alide_1105 NC_014910.1 1171119 1172336 R KEGG: dia:Dtpsy_0927 major facilitator superfamily MFS_1; manually curated; PFAM: major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1171119..1172336) Alicycliphilus denitrificans BC 10103139 YP_004125758.1 CDS Alide_1106 NC_014910.1 1172432 1174408 D PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein; KEGG: dia:Dtpsy_0928 DNA topoisomerase IV subunit B; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA topoisomerase 1172432..1174408 Alicycliphilus denitrificans BC 10103140 YP_004125759.1 CDS Alide_1107 NC_014910.1 1174464 1176806 D SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, A subunit; KEGG: ajs:Ajs_1016 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA topoisomerase iv, a subunit 1174464..1176806 Alicycliphilus denitrificans BC 10103141 YP_004125760.1 CDS Alide_1108 NC_014910.1 1176914 1177372 R PFAM: Endoribonuclease L-PSP; KEGG: ajs:Ajs_1018 endoribonuclease L-PSP; endoribonuclease L-PSP complement(1176914..1177372) Alicycliphilus denitrificans BC 10103142 YP_004125761.1 CDS Alide_1109 NC_014910.1 1177478 1179877 D KEGG: dia:Dtpsy_0933 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 1177478..1179877 Alicycliphilus denitrificans BC 10103143 YP_004125762.1 CDS Alide_1110 NC_014910.1 1180115 1181551 D PFAM: Aldehyde Dehydrogenase; KEGG: dia:Dtpsy_0944 aldehyde dehydrogenase; aldehyde dehydrogenase 1180115..1181551 Alicycliphilus denitrificans BC 10103144 YP_004125763.1 CDS Alide_1111 NC_014910.1 1181757 1182656 R KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; rhodanese domain-containing protein complement(1181757..1182656) Alicycliphilus denitrificans BC 10103145 YP_004125764.1 CDS Alide_1112 NC_014910.1 1182710 1183621 R KEGG: dia:Dtpsy_0952 transmembrane protein; transmembrane protein complement(1182710..1183621) Alicycliphilus denitrificans BC 10103146 YP_004125765.1 CDS Alide_1113 NC_014910.1 1183715 1184854 R PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain-containing protein; rieske (2fe-2S) iron-sulfur domain-containing protein complement(1183715..1184854) Alicycliphilus denitrificans BC 10103147 YP_004125766.1 CDS Alide_1114 NC_014910.1 1185130 1185372 D KEGG: ajs:Ajs_1036 exodeoxyribonuclease VII, small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 1185130..1185372 Alicycliphilus denitrificans BC 10103148 YP_004125767.1 CDS Alide_1115 NC_014910.1 1185372 1186265 D PFAM: Polyprenyl synthetase; KEGG: dia:Dtpsy_0955 polyprenyl synthetase; polyprenyl synthetase 1185372..1186265 Alicycliphilus denitrificans BC 10103149 YP_004125768.1 CDS Alide_1116 NC_014910.1 1186340 1188232 D KEGG: dia:Dtpsy_0956 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; dehydrogenase E1 component; Transketolase domain-containing protein; deoxyxylulose-5-phosphate synthase 1186340..1188232 Alicycliphilus denitrificans BC 10103150 YP_004125769.1 CDS Alide_1117 NC_014910.1 1188360 1189442 D PFAM: Extracellular solute-binding protein, family 7; KEGG: ctt:CtCNB1_3520 twin-arginine translocation pathway signal; ABC transporter substrate-binding protein 1188360..1189442 Alicycliphilus denitrificans BC 10103151 YP_004125770.1 CDS Alide_1118 NC_014910.1 1189522 1194219 R KEGG: gdi:GDI_2676 DEAD/H associated; region: DEAD_assoc; pfam08494; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; dead/h associated domain-containing protein complement(1189522..1194219) Alicycliphilus denitrificans BC 10103152 YP_004125771.1 CDS Alide_1119 NC_014910.1 1194354 1196180 R KEGG: dia:Dtpsy_0958 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM complement(1194354..1196180) Alicycliphilus denitrificans BC 10103153 YP_004125772.1 CDS Alide_1120 NC_014910.1 1196199 1196813 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ctt:CtCNB1_3517 tripartite ATP-independent periplasmic protein; tripartite ATP-independent periplasmic transporter dctq component complement(1196199..1196813) Alicycliphilus denitrificans BC 10103154 YP_004125773.1 CDS Alide_1121 NC_014910.1 1197155 1198108 R PFAM: inositol monophosphatase; KEGG: dia:Dtpsy_0963 inositol-phosphate phosphatase; inositol monophosphatase complement(1197155..1198108) Alicycliphilus denitrificans BC 10103155 YP_004125774.1 CDS Alide_1122 NC_014910.1 1198238 1199050 D KEGG: ajs:Ajs_1046 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase, trmh family, group 1 1198238..1199050 Alicycliphilus denitrificans BC 10103156 YP_004125775.1 CDS Alide_1123 NC_014910.1 1199088 1199879 D TIGRFAM: serine O-acetyltransferase; KEGG: ajs:Ajs_1047 serine O-acetyltransferase; serine o-acetyltransferase 1199088..1199879 Alicycliphilus denitrificans BC 10103157 YP_004125776.1 CDS Alide_1124 NC_014910.1 1199939 1200601 D PFAM: nitroreductase; KEGG: dia:Dtpsy_0966 nitroreductase; nitroreductase 1199939..1200601 Alicycliphilus denitrificans BC 10103158 YP_004125777.1 CDS Alide_1125 NC_014910.1 1200605 1201702 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dia:Dtpsy_0967 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase complement(1200605..1201702) Alicycliphilus denitrificans BC 10103159 YP_004125778.1 CDS Alide_1126 NC_014910.1 1201795 1202391 R KEGG: ajs:Ajs_1051 molybdopterin adenylyltransferase; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein complement(1201795..1202391) Alicycliphilus denitrificans BC 10103160 YP_004125779.1 CDS Alide_1127 NC_014910.1 1202388 1203056 R PFAM: protein of unknown function DUF615; KEGG: dia:Dtpsy_0970 protein of unknown function DUF615; hypothetical protein complement(1202388..1203056) Alicycliphilus denitrificans BC 10103161 YP_004125780.1 CDS Alide_1128 NC_014910.1 1203139 1204560 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: dia:Dtpsy_0971 peptidase U62 modulator of DNA gyrase; peptidase u62 modulator of DNA gyrase 1203139..1204560 Alicycliphilus denitrificans BC 10103162 YP_004125781.1 CDS Alide_1130 NC_014910.1 1205591 1206127 D KEGG: srm:SRM_02731 two-component sensor histidine kinase; hypothetical protein 1205591..1206127 Alicycliphilus denitrificans BC 10103164 YP_004125782.1 CDS Alide_1131 NC_014910.1 1206118 1206453 D KEGG: xca:xccb100_2303 siroheme synthase; hypothetical protein 1206118..1206453 Alicycliphilus denitrificans BC 10103165 YP_004125783.1 CDS Alide_1132 NC_014910.1 1206428 1209505 R PFAM: Hemolysin-type calcium-binding region; KEGG: cvi:CV_0516 calcium binding hemolysin; hemolysin-type calcium-binding protein complement(1206428..1209505) Alicycliphilus denitrificans BC 10103166 YP_004125784.1 CDS Alide_1133 NC_014910.1 1209520 1210224 R KEGG: reu:Reut_C5923 hypothetical protein; hypothetical protein complement(1209520..1210224) Alicycliphilus denitrificans BC 10103167 YP_004125785.1 CDS Alide_1134 NC_014910.1 1210224 1210535 R KEGG: mpt:Mpe_B0404 hypothetical protein; hypothetical protein complement(1210224..1210535) Alicycliphilus denitrificans BC 10103168 YP_004125786.1 CDS Alide_1135 NC_014910.1 1210686 1211267 R TIGRFAM: LexA repressor; KEGG: bpy:Bphyt_3718 LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; lexa repressor complement(1210686..1211267) Alicycliphilus denitrificans BC 10103169 YP_004125787.1 CDS Alide_1136 NC_014910.1 1212050 1212373 D PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1212050..1212373 Alicycliphilus denitrificans BC 10103170 YP_004125788.1 CDS Alide_1139 NC_014910.1 1215217 1216530 D KEGG: dac:Daci_5142 hypothetical protein; hypothetical protein 1215217..1216530 Alicycliphilus denitrificans BC 10103173 YP_004125789.1 CDS Alide_1140 NC_014910.1 1216539 1218743 D KEGG: dac:Daci_5141 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; dead/deah box helicase domain-containing protein 1216539..1218743 Alicycliphilus denitrificans BC 10103174 YP_004125790.1 CDS Alide_1141 NC_014910.1 1218907 1220466 R KEGG: dac:Daci_2654 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type hydro-lyase tartrate/fumarate alpha region; fe-s type, tartrate/fumarate subfamily hydro-lyase subunit alpha complement(1218907..1220466) Alicycliphilus denitrificans BC 10103175 YP_004125791.1 CDS Alide_1142 NC_014910.1 1220635 1222020 D KEGG: aav:Aave_1491 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like; fumarate hydratase, class ii 1220635..1222020 Alicycliphilus denitrificans BC 10103176 YP_004125792.1 CDS Alide_1143 NC_014910.1 1222021 1222803 R KEGG: dia:Dtpsy_0976 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein complement(1222021..1222803) Alicycliphilus denitrificans BC 10103177 YP_004125793.1 CDS Alide_1144 NC_014910.1 1222990 1224000 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dia:Dtpsy_0979 glycine betaine transporter periplasmic subunit; glycine betaine ABC transporter substrate-binding protein complement(1222990..1224000) Alicycliphilus denitrificans BC 10103178 YP_004125794.1 CDS Alide_1145 NC_014910.1 1224076 1225188 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0980 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1224076..1225188) Alicycliphilus denitrificans BC 10103179 YP_004125795.1 CDS Alide_1146 NC_014910.1 1225185 1226489 R TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: ajs:Ajs_1065 glycine betaine/L-proline ABC transporter, ATPase subunit; SMART: AAA ATPase; glycine betaine/l-proline ABC transporter ATPase complement(1225185..1226489) Alicycliphilus denitrificans BC 10103180 YP_004125796.1 CDS Alide_1147 NC_014910.1 1227143 1229140 D KEGG: aav:Aave_1499 acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate/CoA ligase 1227143..1229140 Alicycliphilus denitrificans BC 10103181 YP_004125797.1 CDS Alide_1148 NC_014910.1 1229255 1230301 R KEGG: aav:Aave_1061 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; von Willebrand factor A complement(1229255..1230301) Alicycliphilus denitrificans BC 10103182 YP_004125798.1 CDS Alide_1149 NC_014910.1 1230334 1231302 R PFAM: protein of unknown function DUF58; KEGG: aav:Aave_1062 hypothetical protein; hypothetical protein complement(1230334..1231302) Alicycliphilus denitrificans BC 10103183 YP_004125799.1 CDS Alide_1150 NC_014910.1 1231295 1232326 R PFAM: ATPase associated with various cellular activities AAA_3; KEGG: aav:Aave_1063 ATPase; ATPase AAA complement(1231295..1232326) Alicycliphilus denitrificans BC 10103184 YP_004125800.1 CDS Alide_1151 NC_014910.1 1232341 1233240 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: aav:Aave_1064 peptidase S1 and S6, chymotrypsin/Hap; peptidase s1 and s6 chymotrypsin/hap complement(1232341..1233240) Alicycliphilus denitrificans BC 10103185 YP_004125801.1 CDS Alide_1152 NC_014910.1 1233345 1233707 R KEGG: dia:Dtpsy_2753 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase complement(1233345..1233707) Alicycliphilus denitrificans BC 10103186 YP_004125802.1 CDS Alide_1153 NC_014910.1 1233852 1234160 D KEGG: dia:Dtpsy_2752 transcriptional regulator, TrmB; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; regulatory protein arsr 1233852..1234160 Alicycliphilus denitrificans BC 10103187 YP_004125803.1 CDS Alide_1154 NC_014910.1 1234190 1234387 D KEGG: dia:Dtpsy_2751 hypothetical protein; hypothetical protein 1234190..1234387 Alicycliphilus denitrificans BC 10103188 YP_004125804.1 CDS Alide_1155 NC_014910.1 1234398 1235243 D PFAM: TatD-related deoxyribonuclease; KEGG: ajs:Ajs_3416 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 1234398..1235243 Alicycliphilus denitrificans BC 10103189 YP_004125805.1 CDS Alide_1156 NC_014910.1 1235318 1235842 D KEGG: dia:Dtpsy_2749 hypothetical protein; hypothetical protein 1235318..1235842 Alicycliphilus denitrificans BC 10103190 YP_004125806.1 CDS Alide_1157 NC_014910.1 1235839 1236600 D KEGG: dia:Dtpsy_2748 hypothetical protein; hypothetical protein 1235839..1236600 Alicycliphilus denitrificans BC 10103191 YP_004125807.1 CDS Alide_1158 NC_014910.1 1236605 1238371 D KEGG: dia:Dtpsy_2747 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; type II secretion system protein e 1236605..1238371 Alicycliphilus denitrificans BC 10103192 YP_004125808.1 CDS Alide_1159 NC_014910.1 1238502 1238990 D KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468; hypothetical protein 1238502..1238990 Alicycliphilus denitrificans BC 10103193 YP_004125809.1 CDS Alide_1160 NC_014910.1 1239007 1240518 D PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein; hypothetical protein 1239007..1240518 Alicycliphilus denitrificans BC 10103194 YP_004125810.1 CDS Alide_1161 NC_014910.1 1240720 1241550 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2744 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 1240720..1241550 Alicycliphilus denitrificans BC 10103195 YP_004125811.1 CDS Alide_1162 NC_014910.1 1241550 1242617 D PFAM: Extracellular solute-binding protein, family 7; KEGG: ajs:Ajs_3408 TRAP dicarboxylate transporter-DctP subunit; ABC transporter substrate-binding protein 1241550..1242617 Alicycliphilus denitrificans BC 10103196 YP_004125812.1 CDS Alide_1163 NC_014910.1 1242614 1245277 D TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: dia:Dtpsy_2742 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase 1242614..1245277 Alicycliphilus denitrificans BC 10103197 YP_004125813.1 CDS Alide_1164 NC_014910.1 1245300 1246202 R KEGG: ajs:Ajs_3406 hypothetical protein; manually curated; PFAM: protein of unknown function DUF6 transmembrane; hypothetical protein complement(1245300..1246202) Alicycliphilus denitrificans BC 10103198 YP_004125814.1 CDS Alide_1165 NC_014910.1 1246308 1247294 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dia:Dtpsy_2740 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase 1246308..1247294 Alicycliphilus denitrificans BC 10103199 YP_004125815.1 CDS Alide_1166 NC_014910.1 1247291 1248109 D PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_3404 NUDIX hydrolase; nudix hydrolase 1247291..1248109 Alicycliphilus denitrificans BC 10103200 YP_004125816.1 CDS Alide_1167 NC_014910.1 1248063 1249004 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_3178 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1248063..1249004) Alicycliphilus denitrificans BC 10103201 YP_004125817.1 CDS Alide_1168 NC_014910.1 1249119 1250084 D KEGG: dia:Dtpsy_2738 hypothetical protein; manually curated; PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 1249119..1250084 Alicycliphilus denitrificans BC 10103202 YP_004125818.1 CDS Alide_1169 NC_014910.1 1250094 1251761 R KEGG: aav:Aave_3461 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; Na/Pi-cotransporter II-like protein complement(1250094..1251761) Alicycliphilus denitrificans BC 10103203 YP_004125819.1 CDS Alide_1170 NC_014910.1 1251784 1252623 R PFAM: metallophosphoesterase; KEGG: vap:Vapar_1261 metallophosphoesterase; metallophosphoesterase complement(1251784..1252623) Alicycliphilus denitrificans BC 10103204 YP_004125820.1 CDS Alide_1171 NC_014910.1 1252620 1253681 R KEGG: vap:Vapar_1262 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter complement(1252620..1253681) Alicycliphilus denitrificans BC 10103205 YP_004125821.1 CDS Alide_1172 NC_014910.1 1253671 1254471 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1263 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1253671..1254471) Alicycliphilus denitrificans BC 10103206 YP_004125822.1 CDS Alide_1173 NC_014910.1 1254497 1255306 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1264 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1254497..1255306) Alicycliphilus denitrificans BC 10103207 YP_004125823.1 CDS Alide_1174 NC_014910.1 1255303 1256316 R PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1265 extracellular solute-binding protein family 1; ABC transporter substrate-binding protein complement(1255303..1256316) Alicycliphilus denitrificans BC 10103208 YP_004125824.1 CDS Alide_1175 NC_014910.1 1256356 1257378 R KEGG: vap:Vapar_1266 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; periplasmic-binding protein/LacI transcriptional regulator complement(1256356..1257378) Alicycliphilus denitrificans BC 10103209 YP_004125825.1 CDS Alide_1176 NC_014910.1 1257471 1257968 R TIGRFAM: lipoprotein signal peptidase; KEGG: dia:Dtpsy_2736 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase complement(1257471..1257968) Alicycliphilus denitrificans BC 10103210 YP_004125826.1 CDS Alide_1177 NC_014910.1 1257968 1260823 R KEGG: dia:Dtpsy_2735 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(1257968..1260823) Alicycliphilus denitrificans BC 10103211 YP_004125827.1 CDS Alide_1178 NC_014910.1 1260914 1261960 R KEGG: ajs:Ajs_3398 bifunctional riboflavin kinase/FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein ribf complement(1260914..1261960) Alicycliphilus denitrificans BC 10103212 YP_004125828.1 CDS Alide_1179 NC_014910.1 1262114 1262671 D KEGG: dia:Dtpsy_2733 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; hnh endonuclease 1262114..1262671 Alicycliphilus denitrificans BC 10103213 YP_004125829.1 CDS Alide_1180 NC_014910.1 1262726 1263841 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2732 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(1262726..1263841) Alicycliphilus denitrificans BC 10103214 YP_004125830.1 CDS Alide_1181 NC_014910.1 1263856 1265037 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2731 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(1263856..1265037) Alicycliphilus denitrificans BC 10103215 YP_004125831.1 CDS Alide_1182 NC_014910.1 1265083 1265772 R PFAM: protein of unknown function DUF480; KEGG: ctt:CtCNB1_0874 hypothetical protein; hypothetical protein complement(1265083..1265772) Alicycliphilus denitrificans BC 10103216 YP_004125832.1 CDS Alide_1183 NC_014910.1 1265793 1266374 D KEGG: dac:Daci_5372 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; phosphoribosylglycinamide formyltransferase 1265793..1266374 Alicycliphilus denitrificans BC 10103217 YP_004125833.1 CDS Alide_1184 NC_014910.1 1266490 1267809 D PFAM: Fmu (Sun) domain protein; KEGG: aav:Aave_3433 Fmu (Sun) domain-containing protein; fmu (sun) domain-containing protein 1266490..1267809 Alicycliphilus denitrificans BC 10103218 YP_004125834.1 CDS Alide_1185 NC_014910.1 1267921 1268091 R KEGG: dia:Dtpsy_2723 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; 50S ribosomal protein L33 complement(1267921..1268091) Alicycliphilus denitrificans BC 10103219 YP_004125835.1 CDS Alide_1186 NC_014910.1 1268112 1268345 R KEGG: ctt:CtCNB1_0883 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; 50S ribosomal protein L28 complement(1268112..1268345) Alicycliphilus denitrificans BC 10103220 YP_004125836.1 CDS Alide_1187 NC_014910.1 1268497 1269447 R manually curated; TIGRFAM: thioredoxin reductase; KEGG: dia:Dtpsy_2721 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase complement(1268497..1269447) Alicycliphilus denitrificans BC 10103221 YP_004125837.1 CDS Alide_1188 NC_014910.1 1269592 1271928 D PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: ajs:Ajs_3382 DNA translocase FtsK; DNA translocase FtsK 1269592..1271928 Alicycliphilus denitrificans BC 10103222 YP_004125838.1 CDS Alide_1189 NC_014910.1 1271940 1272572 D KEGG: ajs:Ajs_3381 outer membrane lipoprotein carrier protein LolA; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein lola 1271940..1272572 Alicycliphilus denitrificans BC 10103223 YP_004125839.1 CDS Alide_1190 NC_014910.1 1272576 1273532 R PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 1,4-dihydroxy-2-naphthoate octaprenyltransferase; ubia prenyltransferase complement(1272576..1273532) Alicycliphilus denitrificans BC 10103224 YP_004125840.1 CDS Alide_1191 NC_014910.1 1273555 1274157 R KEGG: dia:Dtpsy_2718 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase complement(1273555..1274157) Alicycliphilus denitrificans BC 10103225 YP_004125841.1 CDS Alide_1192 NC_014910.1 1274198 1275511 D KEGG: ajs:Ajs_3365 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; ATPase AAA 1274198..1275511 Alicycliphilus denitrificans BC 10103226 YP_004125842.1 CDS Alide_1193 NC_014910.1 1275710 1276639 D PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2712 inner-membrane translocator; inner-membrane translocator 1275710..1276639 Alicycliphilus denitrificans BC 10103227 YP_004125843.1 CDS Alide_1194 NC_014910.1 1276656 1277732 D PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2711 inner-membrane translocator; inner-membrane translocator 1276656..1277732 Alicycliphilus denitrificans BC 10103228 YP_004125844.1 CDS Alide_1195 NC_014910.1 1277754 1278536 D KEGG: dia:Dtpsy_2710 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1277754..1278536 Alicycliphilus denitrificans BC 10103229 YP_004125845.1 CDS Alide_1196 NC_014910.1 1278540 1279268 D KEGG: ajs:Ajs_3361 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1278540..1279268 Alicycliphilus denitrificans BC 10103230 YP_004125846.1 CDS Alide_1197 NC_014910.1 1279316 1279726 D PFAM: protein of unknown function DUF486; KEGG: dia:Dtpsy_2708 protein of unknown function DUF486; hypothetical protein 1279316..1279726 Alicycliphilus denitrificans BC 10103231 YP_004125847.1 CDS Alide_1198 NC_014910.1 1279765 1280361 R KEGG: aav:Aave_1879 OmpA domain-containing protein; ompa domain-containing protein complement(1279765..1280361) Alicycliphilus denitrificans BC 10103232 YP_004125848.1 CDS Alide_1199 NC_014910.1 1280601 1281248 D PFAM: Putitive phosphate transport regulator; KEGG: dia:Dtpsy_2707 protein of unknown function DUF47; phosphate transport regulator 1280601..1281248 Alicycliphilus denitrificans BC 10103233 YP_004125849.1 CDS Alide_1200 NC_014910.1 1281269 1282279 D PFAM: phosphate transporter; KEGG: dia:Dtpsy_2706 phosphate transporter; phosphate transporter 1281269..1282279 Alicycliphilus denitrificans BC 10103234 YP_004125850.1 CDS Alide_1201 NC_014910.1 1282333 1282779 R KEGG: dia:Dtpsy_2705 hypothetical protein; hypothetical protein complement(1282333..1282779) Alicycliphilus denitrificans BC 10103235 YP_004125851.1 CDS Alide_1202 NC_014910.1 1282802 1283329 R KEGG: dia:Dtpsy_2704 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; phosphinothricin acetyltransferase complement(1282802..1283329) Alicycliphilus denitrificans BC 10103236 YP_004125852.1 CDS Alide_1203 NC_014910.1 1283446 1283700 D KEGG: dia:Dtpsy_2703 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; 30S ribosomal protein S16 1283446..1283700 Alicycliphilus denitrificans BC 10103237 YP_004125853.1 CDS Alide_1204 NC_014910.1 1283794 1284366 D KEGG: dia:Dtpsy_2702 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; 16S rRNA-processing protein RimM 1283794..1284366 Alicycliphilus denitrificans BC 10103238 YP_004125854.1 CDS Alide_1205 NC_014910.1 1284374 1285141 D TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: ajs:Ajs_3353 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-n1)-methyltransferase 1284374..1285141 Alicycliphilus denitrificans BC 10103239 YP_004125855.1 CDS Alide_1206 NC_014910.1 1285261 1285647 D KEGG: dac:Daci_5342 ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; 50S ribosomal protein L19 1285261..1285647 Alicycliphilus denitrificans BC 10103240 YP_004125856.1 CDS Alide_1207 NC_014910.1 1285758 1286441 D PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_3351 NUDIX hydrolase; nudix hydrolase 1285758..1286441 Alicycliphilus denitrificans BC 10103241 YP_004125857.1 CDS Alide_1208 NC_014910.1 1286488 1287477 D PFAM: cobalamin biosynthesis protein CbiB; KEGG: dia:Dtpsy_2698 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein cbib 1286488..1287477 Alicycliphilus denitrificans BC 10103242 YP_004125858.1 CDS Alide_1209 NC_014910.1 1287553 1288635 D KEGG: vap:Vapar_1479 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; histidinol-phosphate aminotransferase 1287553..1288635 Alicycliphilus denitrificans BC 10103243 YP_004125859.1 CDS Alide_1210 NC_014910.1 1288642 1290300 R PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pne:Pnec_1354 sulphate transporter; sulfate transporter complement(1288642..1290300) Alicycliphilus denitrificans BC 10103244 YP_004125860.1 CDS Alide_1211 NC_014910.1 1290315 1291286 R KEGG: dia:Dtpsy_2697 ribosome small subunit-dependent GTPase A; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; ribosome small subunit-dependent gtpase a complement(1290315..1291286) Alicycliphilus denitrificans BC 10103245 YP_004125861.1 CDS Alide_1212 NC_014910.1 1291296 1291634 R KEGG: dia:Dtpsy_2696 transcriptional coactivator/pterin dehydratase; manually curated; PFAM: transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase complement(1291296..1291634) Alicycliphilus denitrificans BC 10103246 YP_004125862.1 CDS Alide_1213 NC_014910.1 1291631 1292923 R KEGG: dia:Dtpsy_2695 STE24 endopeptidase; PFAM: peptidase M48 Ste24p; ste24 endopeptidase complement(1291631..1292923) Alicycliphilus denitrificans BC 10103247 YP_004125863.1 CDS Alide_1214 NC_014910.1 1292943 1293554 D KEGG: dia:Dtpsy_2694 oligoribonuclease; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; exonuclease rnase t and DNA polymerase iii 1292943..1293554 Alicycliphilus denitrificans BC 10103248 YP_004125864.1 CDS Alide_1215 NC_014910.1 1293678 1294811 D PFAM: Extracellular ligand-binding receptor; KEGG: vap:Vapar_5221 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 1293678..1294811 Alicycliphilus denitrificans BC 10103249 YP_004125865.1 CDS Alide_1216 NC_014910.1 1295078 1296832 D KEGG: dia:Dtpsy_2693 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; dead/deah box helicase domain-containing protein 1295078..1296832 Alicycliphilus denitrificans BC 10103250 YP_004125866.1 CDS Alide_1217 NC_014910.1 1296953 1298416 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_1895 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1296953..1298416 Alicycliphilus denitrificans BC 10103251 YP_004125867.1 CDS Alide_1218 NC_014910.1 1298424 1299656 R KEGG: ajs:Ajs_3344 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter complement(1298424..1299656) Alicycliphilus denitrificans BC 10103252 YP_004125868.1 CDS Alide_1219 NC_014910.1 1299844 1300329 R PFAM: protein of unknown function DUF461; KEGG: dia:Dtpsy_2691 protein of unknown function DUF461; hypothetical protein complement(1299844..1300329) Alicycliphilus denitrificans BC 10103253 YP_004125869.1 CDS Alide_1220 NC_014910.1 1300409 1300780 R KEGG: ajs:Ajs_3342 hypothetical protein; hypothetical protein complement(1300409..1300780) Alicycliphilus denitrificans BC 10103254 YP_004125870.1 CDS Alide_1221 NC_014910.1 1300802 1301533 R KEGG: dia:Dtpsy_2689 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein complement(1300802..1301533) Alicycliphilus denitrificans BC 10103255 YP_004125871.1 CDS Alide_1222 NC_014910.1 1301609 1303762 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dia:Dtpsy_2688 TonB-dependent receptor; tonb-dependent receptor 1301609..1303762 Alicycliphilus denitrificans BC 10103256 YP_004125872.1 CDS Alide_1223 NC_014910.1 1303764 1304780 D KEGG: dia:Dtpsy_2687 periplasmic component of ABC-type transport system; ABC transporter substrate-binding protein 1303764..1304780 Alicycliphilus denitrificans BC 10103257 YP_004125873.1 CDS Alide_1224 NC_014910.1 1304777 1305583 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_2682 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1304777..1305583 Alicycliphilus denitrificans BC 10103258 YP_004125874.1 CDS Alide_1225 NC_014910.1 1305603 1306463 D KEGG: dia:Dtpsy_2681 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1305603..1306463 Alicycliphilus denitrificans BC 10103259 YP_004125875.1 CDS Alide_1226 NC_014910.1 1306585 1307754 D PFAM: NnrS family protein; KEGG: dia:Dtpsy_2680 NnrS family protein; nnrs family protein 1306585..1307754 Alicycliphilus denitrificans BC 10103260 YP_004125876.1 CDS Alide_1227 NC_014910.1 1308074 1310029 D PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: dia:Dtpsy_2686 TonB-dependent receptor plug; tonb-dependent receptor plug 1308074..1310029 Alicycliphilus denitrificans BC 10103261 YP_004125877.1 CDS Alide_1228 NC_014910.1 1310081 1314148 D KEGG: dia:Dtpsy_2685 cobaltochelatase; PFAM: CobN/magnesium chelatase; cobaltochelatase 1310081..1314148 Alicycliphilus denitrificans BC 10103262 YP_004125878.1 CDS Alide_1229 NC_014910.1 1315038 1315634 D KEGG: tdn:Suden_1229 hypothetical protein; hypothetical protein 1315038..1315634 Alicycliphilus denitrificans BC 10103263 YP_004125879.1 CDS Alide_1230 NC_014910.1 1315697 1316233 D KEGG: dia:Dtpsy_2684 hypothetical protein; hypothetical protein 1315697..1316233 Alicycliphilus denitrificans BC 10103264 YP_004125880.1 CDS Alide_1231 NC_014910.1 1316230 1316553 D PFAM: Protein of unknown function DUF2149; KEGG: dia:Dtpsy_2683 hypothetical protein; hypothetical protein 1316230..1316553 Alicycliphilus denitrificans BC 10103265 YP_004125881.1 CDS Alide_1232 NC_014910.1 1316917 1317996 R KEGG: sgl:SG1173 phage integrase; hypothetical protein complement(1316917..1317996) Alicycliphilus denitrificans BC 10103267 YP_004125882.1 CDS Alide_1233 NC_014910.1 1317980 1318255 R KEGG: aav:Aave_1735 hypothetical protein; hypothetical protein complement(1317980..1318255) Alicycliphilus denitrificans BC 10103268 YP_004125883.1 CDS Alide_1234 NC_014910.1 1318258 1318716 R KEGG: pna:Pnap_2277 hypothetical protein; hypothetical protein complement(1318258..1318716) Alicycliphilus denitrificans BC 10103269 YP_004125884.1 CDS Alide_1235 NC_014910.1 1318713 1318997 R KEGG: see:SNSL254_p_0061 hypothetical protein; hypothetical protein complement(1318713..1318997) Alicycliphilus denitrificans BC 10103270 YP_004125885.1 CDS Alide_1236 NC_014910.1 1319004 1320149 R PFAM: C-5 cytosine-specific DNA methylase; KEGG: mlo:mlr7992 DNA modification methylase; c-5 cytosine-specific DNA methylase complement(1319004..1320149) Alicycliphilus denitrificans BC 10103271 YP_004125886.1 CDS Alide_1237 NC_014910.1 1320190 1320402 R KEGG: rsh:Rsph17029_0652 hypothetical protein; hypothetical protein complement(1320190..1320402) Alicycliphilus denitrificans BC 10103272 YP_004125887.1 CDS Alide_1238 NC_014910.1 1320399 1321055 R KEGG: amd:AMED_0550 exopolysaccharide biosynthesis protein; hypothetical protein complement(1320399..1321055) Alicycliphilus denitrificans BC 10103273 YP_004125888.1 CDS Alide_1239 NC_014910.1 1321052 1321270 R KEGG: dac:Daci_2614 hypothetical protein; hypothetical protein complement(1321052..1321270) Alicycliphilus denitrificans BC 10103274 YP_004125889.1 CDS Alide_1240 NC_014910.1 1321295 1321513 R KEGG: ang:An16g04440 hypothetical protein; hypothetical protein complement(1321295..1321513) Alicycliphilus denitrificans BC 10103275 YP_004125890.1 CDS Alide_1241 NC_014910.1 1321519 1321791 R KEGG: pol:Bpro_2970 hypothetical protein; hypothetical protein complement(1321519..1321791) Alicycliphilus denitrificans BC 10103276 YP_004125891.1 CDS Alide_1242 NC_014910.1 1321785 1323761 R PFAM: replication gene A; KEGG: dac:Daci_2615 replication gene A; replication protein a complement(1321785..1323761) Alicycliphilus denitrificans BC 10103277 YP_004125892.1 CDS Alide_1243 NC_014910.1 1323765 1324058 R KEGG: dac:Daci_2616 hypothetical protein; hypothetical protein complement(1323765..1324058) Alicycliphilus denitrificans BC 10103278 YP_004125893.1 CDS Alide_1244 NC_014910.1 1324213 1324371 R KEGG: amd:AMED_8985 hypothetical protein; hypothetical protein complement(1324213..1324371) Alicycliphilus denitrificans BC 10103279 YP_004125894.1 CDS Alide_1245 NC_014910.1 1324362 1324787 R KEGG: rso:RSc1667 hypothetical protein; hypothetical protein complement(1324362..1324787) Alicycliphilus denitrificans BC 10103280 YP_004125895.1 CDS Alide_1246 NC_014910.1 1324906 1325319 R PFAM: transcriptional activator Ogr/delta; KEGG: dac:Daci_2617 transcriptional activator Ogr/delta; transcriptional activator ogr/delta complement(1324906..1325319) Alicycliphilus denitrificans BC 10103281 YP_004125896.1 CDS Alide_1247 NC_014910.1 1325359 1325628 R KEGG: pct:PC1_2629 hypothetical protein; hypothetical protein complement(1325359..1325628) Alicycliphilus denitrificans BC 10103282 YP_004125897.1 CDS Alide_1248 NC_014910.1 1325631 1325846 R KEGG: aau:AAur_4085 transcriptional regulator; hypothetical protein complement(1325631..1325846) Alicycliphilus denitrificans BC 10103283 YP_004125898.1 CDS Alide_1249 NC_014910.1 1325865 1326086 R KEGG: kse:Ksed_24630 capsular exopolysaccharide biosynthesis protein; hypothetical protein complement(1325865..1326086) Alicycliphilus denitrificans BC 10103284 YP_004125899.1 CDS Alide_1250 NC_014910.1 1326189 1326905 D KEGG: aav:Aave_3589 phage repressor; manually curated; PFAM: Peptidase S24/S26A/S26B, conserved region; peptidase s24/s26a/s26b 1326189..1326905 Alicycliphilus denitrificans BC 10103285 YP_004125900.1 CDS Alide_1251 NC_014910.1 1327010 1327720 D KEGG: eic:NT01EI_3144 hypothetical protein; hypothetical protein 1327010..1327720 Alicycliphilus denitrificans BC 10103286 YP_004125901.1 CDS Alide_1252 NC_014910.1 1328007 1328576 R KEGG: aav:Aave_1749 hypothetical protein; hypothetical protein complement(1328007..1328576) Alicycliphilus denitrificans BC 10103287 YP_004125902.1 CDS Alide_1253 NC_014910.1 1328652 1329101 R PFAM: Protein of unknown function DUF2442; KEGG: avn:Avin_37320 hypothetical protein; hypothetical protein complement(1328652..1329101) Alicycliphilus denitrificans BC 10103288 YP_004125903.1 CDS Alide_1254 NC_014910.1 1329098 1329328 R KEGG: eba:ebA5912 hypothetical protein; hypothetical protein complement(1329098..1329328) Alicycliphilus denitrificans BC 10103289 YP_004125904.1 CDS Alide_1255 NC_014910.1 1329380 1330393 R KEGG: dac:Daci_2620 late control D family protein; late control d family protein complement(1329380..1330393) Alicycliphilus denitrificans BC 10103290 YP_004125905.1 CDS Alide_1256 NC_014910.1 1330393 1330836 R PFAM: P2 GpU family protein; KEGG: dac:Daci_2621 P2 GpU family protein; p2 gpu family protein complement(1330393..1330836) Alicycliphilus denitrificans BC 10103291 YP_004125906.1 CDS Alide_1257 NC_014910.1 1330845 1333355 R KEGG: pna:Pnap_3313 TP901 family phage tail tape measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, tp901 family complement(1330845..1333355) Alicycliphilus denitrificans BC 10103292 YP_004125907.1 CDS Alide_1258 NC_014910.1 1333392 1333619 R KEGG: dsi:Dsim_GD23071 GD23071 gene product from transcript GD23071-RA; hypothetical protein complement(1333392..1333619) Alicycliphilus denitrificans BC 10103293 YP_004125908.1 CDS Alide_1259 NC_014910.1 1333662 1333778 R PFAM: P2 GpE family protein; KEGG: dac:Daci_2623 P2 GpE family protein; p2 gpe family protein complement(1333662..1333778) Alicycliphilus denitrificans BC 10103294 YP_004125909.1 CDS Alide_1260 NC_014910.1 1333787 1334146 R PFAM: tail E family protein; KEGG: dac:Daci_2624 tail E family protein; tail e family protein complement(1333787..1334146) Alicycliphilus denitrificans BC 10103295 YP_004125910.1 CDS Alide_1261 NC_014910.1 1334182 1334691 R KEGG: dac:Daci_2625 phage major tail tube protein; TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; phage major tail tube protein complement(1334182..1334691) Alicycliphilus denitrificans BC 10103296 YP_004125911.1 CDS Alide_1262 NC_014910.1 1334717 1335913 R KEGG: dac:Daci_2626 tail sheath protein; tail sheath protein complement(1334717..1335913) Alicycliphilus denitrificans BC 10103297 YP_004125912.1 CDS Alide_1263 NC_014910.1 1335929 1336171 R KEGG: hsm:HSM_0915 hypothetical protein; hypothetical protein complement(1335929..1336171) Alicycliphilus denitrificans BC 10103298 YP_004125913.1 CDS Alide_1264 NC_014910.1 1336218 1336871 R KEGG: mag:amb0391 hypothetical protein; hypothetical protein complement(1336218..1336871) Alicycliphilus denitrificans BC 10103299 YP_004125914.1 CDS Alide_1265 NC_014910.1 1336880 1337800 R KEGG: spv:SPH_1885 cell wall surface anchor family protein; hypothetical protein complement(1336880..1337800) Alicycliphilus denitrificans BC 10103300 YP_004125915.1 CDS Alide_1266 NC_014910.1 1337801 1338439 R KEGG: mca:MCA2902 hypothetical protein; hypothetical protein complement(1337801..1338439) Alicycliphilus denitrificans BC 10103301 YP_004125916.1 CDS Alide_1267 NC_014910.1 1338456 1340702 R KEGG: mca:MCA2904 hypothetical protein; hypothetical protein complement(1338456..1340702) Alicycliphilus denitrificans BC 10103302 YP_004125917.1 CDS Alide_1268 NC_014910.1 1340708 1341919 R KEGG: mca:MCA2905 prophage MuMc02 tail fiber domain-containing protein; hypothetical protein complement(1340708..1341919) Alicycliphilus denitrificans BC 10103303 YP_004125918.1 CDS Alide_1269 NC_014910.1 1341912 1342850 R PFAM: Baseplate J family protein; KEGG: dac:Daci_2635 baseplate J family protein; baseplate j family protein complement(1341912..1342850) Alicycliphilus denitrificans BC 10103304 YP_004125919.1 CDS Alide_1270 NC_014910.1 1342847 1343197 R PFAM: GPW/gp25 family protein; KEGG: dac:Daci_2636 gpW/GP25 family protein; gpw/gp25 family protein complement(1342847..1343197) Alicycliphilus denitrificans BC 10103305 YP_004125920.1 CDS Alide_1271 NC_014910.1 1343194 1343790 R TIGRFAM: phage baseplate assembly protein V; KEGG: dac:Daci_2637 phage baseplate assembly protein V; phage baseplate assembly protein v complement(1343194..1343790) Alicycliphilus denitrificans BC 10103306 YP_004125921.1 CDS Alide_1272 NC_014910.1 1343867 1344343 R TIGRFAM: phage virion morphogenesis protein; KEGG: csa:Csal_1389 phage virion morphogenesis (tail completion) protein; phage virion morphogenesis protein complement(1343867..1344343) Alicycliphilus denitrificans BC 10103307 YP_004125922.1 CDS Alide_1273 NC_014910.1 1344318 1344464 R KEGG: vvi:100251070 hypothetical protein LOC100251070; hypothetical protein complement(1344318..1344464) Alicycliphilus denitrificans BC 10103308 YP_004125923.1 CDS Alide_1274 NC_014910.1 1344443 1344934 R KEGG: dac:Daci_2638 P2 phage tail completion R family protein; p2 phage tail completion r family protein complement(1344443..1344934) Alicycliphilus denitrificans BC 10103309 YP_004125924.1 CDS Alide_1275 NC_014910.1 1344918 1345466 R PFAM: Protein of unknown function DUF2514; KEGG: dac:Daci_2639 hypothetical protein; hypothetical protein complement(1344918..1345466) Alicycliphilus denitrificans BC 10103310 YP_004125925.1 CDS Alide_1276 NC_014910.1 1345513 1345692 R KEGG: rlt:Rleg2_1424 major facilitator superfamily MFS_1; hypothetical protein complement(1345513..1345692) Alicycliphilus denitrificans BC 10103311 YP_004125926.1 CDS Alide_1277 NC_014910.1 1345689 1346216 R PFAM: glycoside hydrolase family 24; KEGG: eba:ebA7232 phage-related lysozyme; glycoside hydrolase family protein complement(1345689..1346216) Alicycliphilus denitrificans BC 10103312 YP_004125927.1 CDS Alide_1278 NC_014910.1 1346207 1346443 R KEGG: dac:Daci_2641 hypothetical protein; hypothetical protein complement(1346207..1346443) Alicycliphilus denitrificans BC 10103313 YP_004125928.1 CDS Alide_1279 NC_014910.1 1346450 1346653 R PFAM: tail X family protein; KEGG: dac:Daci_2642 tail X family protein; tail x family protein complement(1346450..1346653) Alicycliphilus denitrificans BC 10103314 YP_004125929.1 CDS Alide_1280 NC_014910.1 1346653 1347135 R PFAM: head completion protein; KEGG: bps:BPSL0168 phage head completion/stabilization protein; head completion protein complement(1346653..1347135) Alicycliphilus denitrificans BC 10103315 YP_004125930.1 CDS Alide_1281 NC_014910.1 1347262 1347966 R PFAM: small terminase subunit; KEGG: pna:Pnap_3292 phage small terminase subunit; small terminase subunit complement(1347262..1347966) Alicycliphilus denitrificans BC 10103316 YP_004125931.1 CDS Alide_1282 NC_014910.1 1348065 1349069 R KEGG: csa:Csal_1397 phage major capsid protein, P2; TIGRFAM: phage major capsid protein, P2 family; PFAM: major capsid protein P2; phage major capsid protein, p2 family complement(1348065..1349069) Alicycliphilus denitrificans BC 10103317 YP_004125932.1 CDS Alide_1283 NC_014910.1 1349129 1349959 R PFAM: capsid scaffolding; KEGG: pfs:PFLU1589 capsid scafolding protein; capsid scaffolding complement(1349129..1349959) Alicycliphilus denitrificans BC 10103318 YP_004125933.1 CDS Alide_1284 NC_014910.1 1350104 1352005 D KEGG: pna:Pnap_3289 hypothetical protein; hypothetical protein 1350104..1352005 Alicycliphilus denitrificans BC 10103319 YP_004125934.1 CDS Alide_1285 NC_014910.1 1352008 1353099 D KEGG: hse:Hsero_0910 bacteriophage capsid portal protein; TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein; phage portal protein, pbsx family 1352008..1353099 Alicycliphilus denitrificans BC 10103320 YP_004125935.1 CDS Alide_1286 NC_014910.1 1353726 1354703 R KEGG: aav:Aave_1911 guanosine 5'-monophosphate oxidoreductase; TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; guanosine monophosphate reductase complement(1353726..1354703) Alicycliphilus denitrificans BC 10103322 YP_004125936.1 CDS Alide_1287 NC_014910.1 1354937 1357327 D PFAM: UvrD/REP helicase; KEGG: dia:Dtpsy_2677 UvrD/REP helicase; UvrD/REP helicase 1354937..1357327 Alicycliphilus denitrificans BC 10103323 YP_004125937.1 CDS Alide_1288 NC_014910.1 1357349 1359298 R PFAM: protein of unknown function DUF839; KEGG: aav:Aave_1926 exported alkaline phosphatase; hypothetical protein complement(1357349..1359298) Alicycliphilus denitrificans BC 10103324 YP_004125938.1 CDS Alide_1289 NC_014910.1 1359566 1361182 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: dba:Dbac_1471 diguanylate cyclase; SMART: GGDEF domain containing protein; extracellular solute-binding protein family 3; diguanylate cyclase 1359566..1361182 Alicycliphilus denitrificans BC 10103325 YP_004125939.1 CDS Alide_1290 NC_014910.1 1361195 1362016 R KEGG: ajs:Ajs_3321 hypothetical protein; hypothetical protein complement(1361195..1362016) Alicycliphilus denitrificans BC 10103326 YP_004125940.1 CDS Alide_1291 NC_014910.1 1362063 1363013 R TIGRFAM: homoserine kinase; KEGG: ajs:Ajs_3320 homoserine kinase; PFAM: aminoglycoside phosphotransferase; homoserine kinase complement(1362063..1363013) Alicycliphilus denitrificans BC 10103327 YP_004125941.1 CDS Alide_1292 NC_014910.1 1363091 1363456 R KEGG: dia:Dtpsy_2671 hypothetical protein; hypothetical protein complement(1363091..1363456) Alicycliphilus denitrificans BC 10103328 YP_004125942.1 CDS Alide_1293 NC_014910.1 1363488 1363910 R KEGG: ajs:Ajs_3318 hypothetical protein; hypothetical protein complement(1363488..1363910) Alicycliphilus denitrificans BC 10103329 YP_004125943.1 CDS Alide_1294 NC_014910.1 1363992 1366757 D SMART: DNA-directed DNA polymerase; 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; TIGRFAM: DNA polymerase I; KEGG: dia:Dtpsy_2669 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; DNA polymerase i 1363992..1366757 Alicycliphilus denitrificans BC 10103330 YP_004125944.1 CDS Alide_1295 NC_014910.1 1366774 1367703 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B1464 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1366774..1367703) Alicycliphilus denitrificans BC 10103331 YP_004125945.1 CDS Alide_1296 NC_014910.1 1367780 1368595 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: afv:AFLA_059270 short-chain dehydrogenases/reductase, putative; short-chain dehydrogenase/reductase sdr 1367780..1368595 Alicycliphilus denitrificans BC 10103332 YP_004125946.1 CDS Alide_1297 NC_014910.1 1368791 1369759 D KEGG: dac:Daci_0250 hypothetical protein; hypothetical protein 1368791..1369759 Alicycliphilus denitrificans BC 10103333 YP_004125947.1 CDS Alide_1298 NC_014910.1 1369779 1370303 D PFAM: Carboxymuconolactone decarboxylase; KEGG: bpt:Bpet3546 hypothetical protein; carboxymuconolactone decarboxylase 1369779..1370303 Alicycliphilus denitrificans BC 10103334 YP_004125948.1 CDS Alide_1299 NC_014910.1 1370311 1371306 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet4163 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1370311..1371306) Alicycliphilus denitrificans BC 10103335 YP_004125949.1 CDS Alide_1300 NC_014910.1 1371441 1372415 D KEGG: bpt:Bpet4162 secreted protein; secreted protein 1371441..1372415 Alicycliphilus denitrificans BC 10103336 YP_004125950.1 CDS Alide_1301 NC_014910.1 1372443 1373636 D KEGG: bpt:Bpet4161 acyl-CoA transferase/carnitine dehydratase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 1372443..1373636 Alicycliphilus denitrificans BC 10103337 YP_004125951.1 CDS Alide_1302 NC_014910.1 1373660 1374424 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bpt:Bpet4160 enoyl-CoA hydratase; enoyl-CoA hydratase 1373660..1374424 Alicycliphilus denitrificans BC 10103338 YP_004125952.1 CDS Alide_1303 NC_014910.1 1374510 1375394 D KEGG: dia:Dtpsy_2668 carboxymethylenebutenolidase; carboxymethylenebutenolidase 1374510..1375394 Alicycliphilus denitrificans BC 10103339 YP_004125953.1 CDS Alide_1304 NC_014910.1 1375505 1376323 D PFAM: zinc/iron permease; KEGG: dia:Dtpsy_2667 zinc/iron permease; zinc/iron permease 1375505..1376323 Alicycliphilus denitrificans BC 10103340 YP_004125954.1 CDS Alide_1305 NC_014910.1 1376423 1377166 R KEGG: ajs:Ajs_3314 LytR/AlgR family transcriptional regulator; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; response regulator receiver complement(1376423..1377166) Alicycliphilus denitrificans BC 10103341 YP_004125955.1 CDS Alide_1306 NC_014910.1 1377223 1377942 R TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: dia:Dtpsy_2506 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase serb complement(1377223..1377942) Alicycliphilus denitrificans BC 10103342 YP_004125956.1 CDS Alide_1307 NC_014910.1 1378284 1380458 D KEGG: ppw:PputW619_2172 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; Mannitol dehydrogenase domain; HAD-superfamily hydrolase 1378284..1380458 Alicycliphilus denitrificans BC 10103343 YP_004125957.1 CDS Alide_1308 NC_014910.1 1380625 1381305 R KEGG: dia:Dtpsy_2505 hypothetical protein; hypothetical protein complement(1380625..1381305) Alicycliphilus denitrificans BC 10103344 YP_004125958.1 CDS Alide_1309 NC_014910.1 1381312 1384803 R TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; KEGG: ajs:Ajs_3157 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor complement(1381312..1384803) Alicycliphilus denitrificans BC 10103345 YP_004125959.1 CDS Alide_1310 NC_014910.1 1384882 1385730 D KEGG: dia:Dtpsy_2503 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1384882..1385730 Alicycliphilus denitrificans BC 10103346 YP_004125960.1 CDS Alide_1311 NC_014910.1 1385751 1386230 D KEGG: dia:Dtpsy_2502 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1385751..1386230 Alicycliphilus denitrificans BC 10103347 YP_004125961.1 CDS Alide_1312 NC_014910.1 1386303 1387808 R KEGG: dia:Dtpsy_2501 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding domain-containing protein complement(1386303..1387808) Alicycliphilus denitrificans BC 10103348 YP_004125962.1 CDS Alide_1313 NC_014910.1 1387881 1388612 R KEGG: dia:Dtpsy_2500 osmolarity response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver complement(1387881..1388612) Alicycliphilus denitrificans BC 10103349 YP_004125963.1 CDS Alide_1314 NC_014910.1 1388809 1389537 D PFAM: protein of unknown function DUF541; KEGG: dia:Dtpsy_2499 protein of unknown function DUF541; hypothetical protein 1388809..1389537 Alicycliphilus denitrificans BC 10103350 YP_004125964.1 CDS Alide_1315 NC_014910.1 1389592 1390374 R KEGG: dia:Dtpsy_2498 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; 3-hydroxybutyrate dehydrogenase complement(1389592..1390374) Alicycliphilus denitrificans BC 10103351 YP_004125965.1 CDS Alide_1316 NC_014910.1 1390523 1391386 D PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_3150 alpha/beta hydrolase fold; alpha/beta hydrolase 1390523..1391386 Alicycliphilus denitrificans BC 10103352 YP_004125966.1 CDS Alide_1317 NC_014910.1 1391383 1393629 D TIGRFAM: RelA/SpoT family protein; KEGG: ajs:Ajs_3149 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain-containing protein; amino acid-binding ACT domain protein; rela/spot family protein 1391383..1393629 Alicycliphilus denitrificans BC 10103353 YP_004125967.1 CDS Alide_1318 NC_014910.1 1394168 1394383 D KEGG: dia:Dtpsy_2387 hypothetical protein; hypothetical protein 1394168..1394383 Alicycliphilus denitrificans BC 10103355 YP_004125968.1 CDS Alide_1319 NC_014910.1 1394448 1394756 D KEGG: dia:Dtpsy_2389 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; rnp-1 like RNA-binding protein 1394448..1394756 Alicycliphilus denitrificans BC 10103356 YP_004125969.1 CDS Alide_1320 NC_014910.1 1394949 1395488 D KEGG: dia:Dtpsy_2495 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; polyhydroxyalkanoate synthesis repressor phar 1394949..1395488 Alicycliphilus denitrificans BC 10103357 YP_004125970.1 CDS Alide_1321 NC_014910.1 1395526 1396917 D TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: dia:Dtpsy_2494 ribosomal protein S12 methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; miab-like tRNA modifying enzyme ylig 1395526..1396917 Alicycliphilus denitrificans BC 10103358 YP_004125971.1 CDS Alide_1322 NC_014910.1 1396975 1397334 R KEGG: dia:Dtpsy_2493 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type; peptidyl-prolyl isomerase complement(1396975..1397334) Alicycliphilus denitrificans BC 10103359 YP_004125972.1 CDS Alide_1323 NC_014910.1 1397450 1397755 R KEGG: dia:Dtpsy_2492 transcriptional regulator; transcriptional regulator complement(1397450..1397755) Alicycliphilus denitrificans BC 10103360 YP_004125973.1 CDS Alide_1324 NC_014910.1 1397907 1398836 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_3144 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1397907..1398836) Alicycliphilus denitrificans BC 10103361 YP_004125974.1 CDS Alide_1325 NC_014910.1 1398945 1399874 D PFAM: pyruvate carboxyltransferase; KEGG: dia:Dtpsy_2490 pyruvate carboxyltransferase; pyruvate carboxyltransferase 1398945..1399874 Alicycliphilus denitrificans BC 10103362 YP_004125975.1 CDS Alide_1326 NC_014910.1 1399905 1401098 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_3142 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 1399905..1401098 Alicycliphilus denitrificans BC 10103363 YP_004125976.1 CDS Alide_1327 NC_014910.1 1401132 1402133 D KEGG: dia:Dtpsy_2488 hypothetical protein; hypothetical protein 1401132..1402133 Alicycliphilus denitrificans BC 10103364 YP_004125977.1 CDS Alide_1328 NC_014910.1 1402207 1403157 R TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: ajs:Ajs_3139 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase complement(1402207..1403157) Alicycliphilus denitrificans BC 10103365 YP_004125978.1 CDS Alide_1329 NC_014910.1 1403204 1403887 R PFAM: methyladenine glycosylase; KEGG: neu:NE0447 hypothetical protein; methyladenine glycosylase complement(1403204..1403887) Alicycliphilus denitrificans BC 10103366 YP_004125979.1 CDS Alide_1330 NC_014910.1 1403919 1404026 R KEGG: rhi:NGR_b07690 hypothetical protein; hypothetical protein complement(1403919..1404026) Alicycliphilus denitrificans BC 10103367 YP_004125980.1 CDS Alide_1331 NC_014910.1 1404153 1406561 R KEGG: dia:Dtpsy_2485 RNA polymerase, sigma 70 subunit, RpoD; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 1.1 domain protein; sigma-70 region 1.2; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; RNA polymerase sigma factor rpod complement(1404153..1406561) Alicycliphilus denitrificans BC 10103368 YP_004125981.1 CDS Alide_1332 NC_014910.1 1406820 1408745 R TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; DNA primase, DnaB-helicase binding domain; KEGG: ajs:Ajs_3137 DNA primase; SMART: Toprim sub domain-containing protein; DNA primase complement(1406820..1408745) Alicycliphilus denitrificans BC 10103369 YP_004125982.1 CDS Alide_1333 NC_014910.1 1409085 1410731 D PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_2483 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 1409085..1410731 Alicycliphilus denitrificans BC 10103370 YP_004125983.1 CDS Alide_1334 NC_014910.1 1410788 1412350 R KEGG: maq:Maqu_3283 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; phospholipase d/transphosphatidylase complement(1410788..1412350) Alicycliphilus denitrificans BC 10103371 YP_004125984.1 CDS Alide_1335 NC_014910.1 1412347 1413486 R PFAM: regulatory protein LysR; KEGG: ajs:Ajs_3130 molybdate metabolism transcriptional regulator; LysR family transcriptional regulator complement(1412347..1413486) Alicycliphilus denitrificans BC 10103372 YP_004125985.1 CDS Alide_1336 NC_014910.1 1413537 1414271 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3129 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1413537..1414271 Alicycliphilus denitrificans BC 10103373 YP_004125986.1 CDS Alide_1337 NC_014910.1 1414268 1415044 D KEGG: ajs:Ajs_3128 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1414268..1415044 Alicycliphilus denitrificans BC 10103374 YP_004125987.1 CDS Alide_1338 NC_014910.1 1415041 1415868 D PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_3127 extracellular solute-binding protein; ABC transporter substrate-binding protein 1415041..1415868 Alicycliphilus denitrificans BC 10103375 YP_004125988.1 CDS Alide_1339 NC_014910.1 1415889 1416818 R KEGG: pna:Pnap_0462 hypothetical protein; hypothetical protein complement(1415889..1416818) Alicycliphilus denitrificans BC 10103376 YP_004125989.1 CDS Alide_1340 NC_014910.1 1416933 1418009 R TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain-containing protein; KEGG: ajs:Ajs_3126 molybdate ABC transporter, ATPase subunit; SMART: AAA ATPase; molybdate ABC transporter atpase subunit complement(1416933..1418009) Alicycliphilus denitrificans BC 10103377 YP_004125990.1 CDS Alide_1341 NC_014910.1 1418006 1418689 R KEGG: ajs:Ajs_3125 molybdate ABC transporter, inner membrane subunit; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit complement(1418006..1418689) Alicycliphilus denitrificans BC 10103378 YP_004125991.1 CDS Alide_1342 NC_014910.1 1418783 1419547 R KEGG: dia:Dtpsy_2470 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; molybdenum ABC transporter periplasmic molybdate-binding protein complement(1418783..1419547) Alicycliphilus denitrificans BC 10103379 YP_004125992.1 CDS Alide_1343 NC_014910.1 1419614 1420405 D PFAM: TOBE domain-containing protein; regulatory protein LysR; KEGG: dia:Dtpsy_2469 transcriptional regulator, ModE family; tobe domain-containing protein 1419614..1420405 Alicycliphilus denitrificans BC 10103380 YP_004125993.1 CDS Alide_1344 NC_014910.1 1420568 1421338 D KEGG: dia:Dtpsy_2468 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1420568..1421338 Alicycliphilus denitrificans BC 10103381 YP_004125994.1 CDS Alide_1345 NC_014910.1 1421340 1422050 D KEGG: ajs:Ajs_3121 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1421340..1422050 Alicycliphilus denitrificans BC 10103382 YP_004125995.1 CDS Alide_1346 NC_014910.1 1422100 1423302 D PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2466 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 1422100..1423302 Alicycliphilus denitrificans BC 10103383 YP_004125996.1 CDS Alide_1347 NC_014910.1 1423374 1424573 D PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3119 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 1423374..1424573 Alicycliphilus denitrificans BC 10103384 YP_004125997.1 CDS Alide_1348 NC_014910.1 1424620 1425504 D KEGG: dia:Dtpsy_2464 inner-membrane translocator; manually curated; PFAM: inner-membrane translocator; inner-membrane translocator 1424620..1425504 Alicycliphilus denitrificans BC 10103385 YP_004125998.1 CDS Alide_1349 NC_014910.1 1425523 1426524 D PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2463 inner-membrane translocator; inner-membrane translocator 1425523..1426524 Alicycliphilus denitrificans BC 10103386 YP_004125999.1 CDS Alide_1350 NC_014910.1 1426580 1427674 R KEGG: ajs:Ajs_3116 secreted hydrolase-like protein; secreted hydrolase-like protein complement(1426580..1427674) Alicycliphilus denitrificans BC 10103387 YP_004126000.1 CDS Alide_1351 NC_014910.1 1427671 1428741 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ajs:Ajs_3115 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta complement(1427671..1428741) Alicycliphilus denitrificans BC 10103388 YP_004126001.1 CDS Alide_1352 NC_014910.1 1428760 1431399 R PFAM: protein of unknown function DUF214; KEGG: dia:Dtpsy_2460 protein of unknown function DUF214; hypothetical protein complement(1428760..1431399) Alicycliphilus denitrificans BC 10103389 YP_004126002.1 CDS Alide_1353 NC_014910.1 1431532 1431960 D PFAM: heat shock protein Hsp20; KEGG: ajs:Ajs_3113 heat shock protein HSP20; heat shock protein Hsp20 1431532..1431960 Alicycliphilus denitrificans BC 10103390 YP_004126003.1 CDS Alide_1354 NC_014910.1 1431970 1432641 R KEGG: dia:Dtpsy_2458 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(1431970..1432641) Alicycliphilus denitrificans BC 10103391 YP_004126004.1 CDS Alide_1355 NC_014910.1 1432703 1433665 R TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dia:Dtpsy_2457 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1432703..1433665) Alicycliphilus denitrificans BC 10103392 YP_004126005.1 CDS Alide_1356 NC_014910.1 1433655 1434623 R PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3110 Bcr/CflA subfamily drug resistance transporter; major facilitator superfamily protein complement(1433655..1434623) Alicycliphilus denitrificans BC 10103393 YP_004126006.1 CDS Alide_1357 NC_014910.1 1434805 1435749 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dia:Dtpsy_2455 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 1434805..1435749 Alicycliphilus denitrificans BC 10103394 YP_004126007.1 CDS Alide_1358 NC_014910.1 1435746 1436183 R PFAM: histidine triad (HIT) protein; KEGG: dia:Dtpsy_2454 histidine triad (HIT) protein; histidine triad (hit) protein complement(1435746..1436183) Alicycliphilus denitrificans BC 10103395 YP_004126008.1 CDS Alide_1359 NC_014910.1 1436293 1437315 R PFAM: porin Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type; porin complement(1436293..1437315) Alicycliphilus denitrificans BC 10103396 YP_004126009.1 CDS Alide_1360 NC_014910.1 1437563 1438186 D KEGG: dia:Dtpsy_2451 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding protein 1437563..1438186 Alicycliphilus denitrificans BC 10103397 YP_004126010.1 CDS Alide_1361 NC_014910.1 1438472 1440568 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: dia:Dtpsy_2450 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase 1438472..1440568 Alicycliphilus denitrificans BC 10103398 YP_004126011.1 CDS Alide_1362 NC_014910.1 1440705 1442294 D KEGG: dia:Dtpsy_2447 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1440705..1442294 Alicycliphilus denitrificans BC 10103399 YP_004126012.1 CDS Alide_1363 NC_014910.1 1442281 1443354 D PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2446 inner-membrane translocator; inner-membrane translocator 1442281..1443354 Alicycliphilus denitrificans BC 10103400 YP_004126013.1 CDS Alide_1364 NC_014910.1 1443354 1444274 D PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2445 inner-membrane translocator; inner-membrane translocator 1443354..1444274 Alicycliphilus denitrificans BC 10103401 YP_004126014.1 CDS Alide_1365 NC_014910.1 1444297 1445442 D PFAM: basic membrane lipoprotein; KEGG: dia:Dtpsy_2444 basic membrane lipoprotein; basic membrane lipoprotein 1444297..1445442 Alicycliphilus denitrificans BC 10103402 YP_004126015.1 CDS Alide_1366 NC_014910.1 1445483 1446649 D PFAM: basic membrane lipoprotein; KEGG: dia:Dtpsy_2443 basic membrane lipoprotein; basic membrane lipoprotein 1445483..1446649 Alicycliphilus denitrificans BC 10103403 YP_004126016.1 CDS Alide_1367 NC_014910.1 1446700 1447998 R PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc3407 oxidoreductase protein; FAD-dependent oxidoreductase complement(1446700..1447998) Alicycliphilus denitrificans BC 10103404 YP_004126017.1 CDS Alide_1368 NC_014910.1 1447995 1448741 R KEGG: rso:RSc3408 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(1447995..1448741) Alicycliphilus denitrificans BC 10103405 YP_004126018.1 CDS Alide_1369 NC_014910.1 1448738 1449403 R KEGG: rso:RSc3409 amino-acid transmembrane ABC transporter protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(1448738..1449403) Alicycliphilus denitrificans BC 10103406 YP_004126019.1 CDS Alide_1370 NC_014910.1 1449430 1450200 R KEGG: rsl:RPSI07_0031 amino acid-binding periplasmic (Pbp) abc transporter protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein complement(1449430..1450200) Alicycliphilus denitrificans BC 10103407 YP_004126020.1 CDS Alide_1371 NC_014910.1 1450404 1451198 D KEGG: rso:RSc3411 transcription regulator protein; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; transcriptional regulator iclr 1450404..1451198 Alicycliphilus denitrificans BC 10103408 YP_004126021.1 CDS Alide_1372 NC_014910.1 1451237 1451590 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: reu:Reut_C6271 hypothetical protein; hypothetical protein 1451237..1451590 Alicycliphilus denitrificans BC 10103409 YP_004126022.1 CDS Alide_1373 NC_014910.1 1451683 1452735 D TIGRFAM: adenosine deaminase; KEGG: dia:Dtpsy_2442 adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 1451683..1452735 Alicycliphilus denitrificans BC 10103410 YP_004126023.1 CDS Alide_1374 NC_014910.1 1452741 1454048 R KEGG: bav:BAV1558 acyl coenzyme A thioester hydrolase; PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; palmitoyl-CoA hydrolase complement(1452741..1454048) Alicycliphilus denitrificans BC 10103411 YP_004126024.1 CDS Alide_1375 NC_014910.1 1454048 1455616 R PFAM: extracellular solute-binding protein family 5; KEGG: bav:BAV1559 ABC transporter, substrate binding protein; ABC transporter substrate-binding protein complement(1454048..1455616) Alicycliphilus denitrificans BC 10103412 YP_004126025.1 CDS Alide_1376 NC_014910.1 1455740 1456735 R TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: rsl:RPSI07_1508 dipeptide transport ATP-binding (ABC superfamily); SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(1455740..1456735) Alicycliphilus denitrificans BC 10103413 YP_004126026.1 CDS Alide_1377 NC_014910.1 1456732 1457706 R TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: rpf:Rpic12D_1762 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(1456732..1457706) Alicycliphilus denitrificans BC 10103414 YP_004126027.1 CDS Alide_1378 NC_014910.1 1457703 1458602 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1562 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1457703..1458602) Alicycliphilus denitrificans BC 10103415 YP_004126028.1 CDS Alide_1379 NC_014910.1 1458599 1459573 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1563 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1458599..1459573) Alicycliphilus denitrificans BC 10103416 YP_004126029.1 CDS Alide_1380 NC_014910.1 1459570 1460568 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rsc:RCFBP_11452 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1459570..1460568) Alicycliphilus denitrificans BC 10103417 YP_004126030.1 CDS Alide_1381 NC_014910.1 1460751 1461398 R TIGRFAM: arylformamidase; KEGG: dia:Dtpsy_2438 arylformamidase; PFAM: cyclase family protein; arylformamidase complement(1460751..1461398) Alicycliphilus denitrificans BC 10103418 YP_004126031.1 CDS Alide_1382 NC_014910.1 1461400 1461723 R PFAM: protein of unknown function UPF0153; KEGG: dia:Dtpsy_2436 protein of unknown function UPF0153; hypothetical protein complement(1461400..1461723) Alicycliphilus denitrificans BC 10103419 YP_004126032.1 CDS Alide_1383 NC_014910.1 1461843 1462142 D PFAM: FeoA family protein; KEGG: dia:Dtpsy_2435 FeoA family protein; feoa family protein 1461843..1462142 Alicycliphilus denitrificans BC 10103420 YP_004126033.1 CDS Alide_1384 NC_014910.1 1462139 1464079 D KEGG: dia:Dtpsy_2434 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein; ferrous iron transport protein B 1462139..1464079 Alicycliphilus denitrificans BC 10103421 YP_004126034.1 CDS Alide_1385 NC_014910.1 1464081 1464326 D KEGG: dac:Daci_2177 hypothetical protein; hypothetical protein 1464081..1464326 Alicycliphilus denitrificans BC 10103422 YP_004126035.1 CDS Alide_1386 NC_014910.1 1464386 1464733 R PFAM: protein of unknown function UPF0153; KEGG: ajs:Ajs_3004 hypothetical protein; hypothetical protein complement(1464386..1464733) Alicycliphilus denitrificans BC 10103423 YP_004126036.1 CDS Alide_1387 NC_014910.1 1464833 1465042 D KEGG: pde:Pden_4005 hypothetical protein; hypothetical protein 1464833..1465042 Alicycliphilus denitrificans BC 10103424 YP_004126037.1 CDS Alide_1388 NC_014910.1 1465049 1465582 D KEGG: bbr:BB2477 hypothetical protein; hypothetical protein 1465049..1465582 Alicycliphilus denitrificans BC 10103425 YP_004126038.1 CDS Alide_1389 NC_014910.1 1465907 1466827 R TIGRFAM: ornithine carbamoyltransferase; KEGG: dia:Dtpsy_2430 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; ornithine carbamoyltransferase complement(1465907..1466827) Alicycliphilus denitrificans BC 10103426 YP_004126039.1 CDS Alide_1390 NC_014910.1 1466844 1468040 R KEGG: dia:Dtpsy_2429 acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; acetylornithine and succinylornithine aminotransferase complement(1466844..1468040) Alicycliphilus denitrificans BC 10103427 YP_004126040.1 CDS Alide_1391 NC_014910.1 1468278 1468592 D KEGG: dia:Dtpsy_2428 hypothetical protein; hypothetical protein 1468278..1468592 Alicycliphilus denitrificans BC 10103428 YP_004126041.1 CDS Alide_1392 NC_014910.1 1468636 1469181 R manually curated; KEGG: vap:Vapar_5710 hypothetical protein; hypothetical protein complement(1468636..1469181) Alicycliphilus denitrificans BC 10103429 YP_004126042.1 CDS Alide_1393 NC_014910.1 1469213 1469701 R KEGG: rfr:Rfer_0842 hypothetical protein; hypothetical protein complement(1469213..1469701) Alicycliphilus denitrificans BC 10103430 YP_004126043.1 CDS Alide_1394 NC_014910.1 1470142 1470441 R KEGG: dia:Dtpsy_2427 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; 30S ribosomal protein S20 complement(1470142..1470441) Alicycliphilus denitrificans BC 10103431 YP_004126044.1 CDS Alide_1395 NC_014910.1 1470546 1472111 D KEGG: ajs:Ajs_2999 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; integral membrane protein mvin 1470546..1472111 Alicycliphilus denitrificans BC 10103432 YP_004126045.1 CDS Alide_1396 NC_014910.1 1472128 1472976 D KEGG: ajs:Ajs_2998 hypothetical protein; hypothetical protein 1472128..1472976 Alicycliphilus denitrificans BC 10103433 YP_004126046.1 CDS Alide_1397 NC_014910.1 1472978 1473373 R PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_2423 UspA domain protein; uspa domain-containing protein complement(1472978..1473373) Alicycliphilus denitrificans BC 10103434 YP_004126047.1 CDS Alide_1398 NC_014910.1 1473605 1474690 R KEGG: dia:Dtpsy_2422 hypothetical protein; hypothetical protein complement(1473605..1474690) Alicycliphilus denitrificans BC 10103435 YP_004126048.1 CDS Alide_1399 NC_014910.1 1474724 1475764 R TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: ajs:Ajs_2994 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase complement(1474724..1475764) Alicycliphilus denitrificans BC 10103436 YP_004126049.1 CDS Alide_1400 NC_014910.1 1475921 1477873 R TIGRFAM: gamma-glutamyltransferase; KEGG: aci:ACIAD0929 gamma-glutamyltranspeptidase precursor; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(1475921..1477873) Alicycliphilus denitrificans BC 10103437 YP_004126050.1 CDS Alide_1401 NC_014910.1 1478196 1478903 D KEGG: aav:Aave_1971 chromosomal replication initiator, DnaA; TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; dnaa regulatory inactivator hda 1478196..1478903 Alicycliphilus denitrificans BC 10103438 YP_004126051.1 CDS Alide_1402 NC_014910.1 1478900 1479574 D KEGG: dia:Dtpsy_2419 HAD-superfamily subfamily IB hydrolase, TIGR01490; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; had-superfamily subfamily ib hydrolase, tigr01490 1478900..1479574 Alicycliphilus denitrificans BC 10103439 YP_004126052.1 CDS Alide_1403 NC_014910.1 1479571 1481139 D KEGG: dia:Dtpsy_2418 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 1479571..1481139 Alicycliphilus denitrificans BC 10103440 YP_004126053.1 CDS Alide_1404 NC_014910.1 1481136 1481654 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: ajs:Ajs_2990 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1481136..1481654 Alicycliphilus denitrificans BC 10103441 YP_004126054.1 CDS Alide_1405 NC_014910.1 1481850 1482830 D PFAM: glycosyl transferase family 2; KEGG: bav:BAV2928 bactoprenol glucosyl transferase; family 2 glycosyl transferase 1481850..1482830 Alicycliphilus denitrificans BC 10103442 YP_004126055.1 CDS Alide_1406 NC_014910.1 1482827 1484404 D PFAM: glycosyl transferase family 39; KEGG: dac:Daci_2190 glycosyl transferase family protein; glycosyl transferase family protein 1482827..1484404 Alicycliphilus denitrificans BC 10103443 YP_004126056.1 CDS Alide_1407 NC_014910.1 1484352 1484762 R PFAM: GtrA family protein; KEGG: dar:Daro_2757 GtrA-like protein; gtra family protein complement(1484352..1484762) Alicycliphilus denitrificans BC 10103444 YP_004126057.1 CDS Alide_1408 NC_014910.1 1484781 1485635 D PFAM: YdjC family protein; KEGG: vap:Vapar_5574 YdjC family protein; hypothetical protein 1484781..1485635 Alicycliphilus denitrificans BC 10103445 YP_004126058.1 CDS Alide_1409 NC_014910.1 1485693 1486664 R KEGG: ajs:Ajs_2989 hypothetical protein; hypothetical protein complement(1485693..1486664) Alicycliphilus denitrificans BC 10103446 YP_004126059.1 CDS Alide_1410 NC_014910.1 1486714 1487697 R KEGG: reu:Reut_B5440 hypothetical protein; hypothetical protein complement(1486714..1487697) Alicycliphilus denitrificans BC 10103447 YP_004126060.1 CDS Alide_1411 NC_014910.1 1487750 1488760 R KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase; uroporphyrinogen decarboxylase complement(1487750..1488760) Alicycliphilus denitrificans BC 10103448 YP_004126061.1 CDS Alide_1412 NC_014910.1 1488971 1489888 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reu:Reut_B5443 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(1488971..1489888) Alicycliphilus denitrificans BC 10103449 YP_004126062.1 CDS Alide_1413 NC_014910.1 1490005 1491153 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: hch:HCH_06702 cysteine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 1490005..1491153 Alicycliphilus denitrificans BC 10103450 YP_004126063.1 CDS Alide_1414 NC_014910.1 1491160 1492221 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: dia:Dtpsy_2414 CDP-6-deoxy-delta-3,4-glucoseen reductase; oxidoreductase fad/nad(p)-binding domain-containing protein complement(1491160..1492221) Alicycliphilus denitrificans BC 10103451 YP_004126064.1 CDS Alide_1415 NC_014910.1 1492290 1493231 D PFAM: TrkA-N domain protein; KEGG: ajs:Ajs_2986 NAD-dependent epimerase/dehydratase; TrkA domain-containing protein 1492290..1493231 Alicycliphilus denitrificans BC 10103452 YP_004126065.1 CDS Alide_1416 NC_014910.1 1493219 1493851 R KEGG: dia:Dtpsy_2412 hypothetical protein; hypothetical protein complement(1493219..1493851) Alicycliphilus denitrificans BC 10103453 YP_004126066.1 CDS Alide_1417 NC_014910.1 1493886 1494410 R KEGG: dia:Dtpsy_2411 hypothetical protein; hypothetical protein complement(1493886..1494410) Alicycliphilus denitrificans BC 10103454 YP_004126067.1 CDS Alide_1418 NC_014910.1 1494538 1495626 D KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein; transposase is4 family protein 1494538..1495626 Alicycliphilus denitrificans BC 10103455 YP_004126068.1 CDS Alide_1419 NC_014910.1 1495938 1496906 R KEGG: ajs:Ajs_2981 hypothetical protein; hypothetical protein complement(1495938..1496906) Alicycliphilus denitrificans BC 10103456 YP_004126069.1 CDS Alide_1420 NC_014910.1 1496975 1498216 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dia:Dtpsy_2408 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f complement(1496975..1498216) Alicycliphilus denitrificans BC 10103457 YP_004126070.1 CDS Alide_1421 NC_014910.1 1498276 1499472 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2407 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(1498276..1499472) Alicycliphilus denitrificans BC 10103458 YP_004126071.1 CDS Alide_1422 NC_014910.1 1499644 1500594 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_2978 LysR family transcriptional regulator; LysR family transcriptional regulator 1499644..1500594 Alicycliphilus denitrificans BC 10103459 YP_004126072.1 CDS Alide_1423 NC_014910.1 1500589 1500981 R PFAM: LrgB family protein; KEGG: dia:Dtpsy_2405 LrgB family protein; lrgb family protein complement(1500589..1500981) Alicycliphilus denitrificans BC 10103460 YP_004126073.1 CDS Alide_1424 NC_014910.1 1500981 1501256 R PFAM: LrgA family protein; KEGG: dia:Dtpsy_2404 LrgA family protein; lrga family protein complement(1500981..1501256) Alicycliphilus denitrificans BC 10103461 YP_004126074.1 CDS Alide_1425 NC_014910.1 1501561 1501788 D KEGG: dia:Dtpsy_2403 hypothetical protein; hypothetical protein 1501561..1501788 Alicycliphilus denitrificans BC 10103462 YP_004126075.1 CDS Alide_1426 NC_014910.1 1501821 1501934 D KEGG: dgr:Dgri_GH23134 GH23134 gene product from transcript GH23134-RA; hypothetical protein 1501821..1501934 Alicycliphilus denitrificans BC 10103463 YP_004126076.1 CDS Alide_1427 NC_014910.1 1501952 1502248 R KEGG: ajs:Ajs_2619 hypothetical protein; hypothetical protein complement(1501952..1502248) Alicycliphilus denitrificans BC 10103464 YP_004126077.1 CDS Alide_1428 NC_014910.1 1502404 1503006 R PFAM: protein of unknown function DUF1555; KEGG: tbd:Tbd_0194 hypothetical protein; hypothetical protein complement(1502404..1503006) Alicycliphilus denitrificans BC 10103465 YP_004126078.1 CDS Alide_1429 NC_014910.1 1503230 1503547 R TIGRFAM: phage head-tail adaptor; KEGG: bcm:Bcenmc03_1291 phage head-tail adaptor; phage head-tail adaptor complement(1503230..1503547) Alicycliphilus denitrificans BC 10103466 YP_004126079.1 CDS Alide_1430 NC_014910.1 1503544 1503822 R TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bcm:Bcenmc03_1290 phage protein DNA packaging protein; phage protein complement(1503544..1503822) Alicycliphilus denitrificans BC 10103467 YP_004126080.1 CDS Alide_1431 NC_014910.1 1504003 1505508 R PFAM: Terminase; KEGG: pap:PSPA7_5155 phage terminase, large subunit; terminase complement(1504003..1505508) Alicycliphilus denitrificans BC 10103468 YP_004126081.1 CDS Alide_1432 NC_014910.1 1505531 1505941 R KEGG: xbo:XBJ1_2042 terminase small subunit; terminase small subunit complement(1505531..1505941) Alicycliphilus denitrificans BC 10103469 YP_004126082.1 CDS Alide_1433 NC_014910.1 1506007 1506360 R KEGG: pap:PSPA7_5153 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; hnh endonuclease complement(1506007..1506360) Alicycliphilus denitrificans BC 10103470 YP_004126083.1 CDS Alide_1434 NC_014910.1 1506357 1507550 R KEGG: bcm:Bcenmc03_1286 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; phage portal protein, hk97 family complement(1506357..1507550) Alicycliphilus denitrificans BC 10103471 YP_004126084.1 CDS Alide_1435 NC_014910.1 1507547 1508095 R KEGG: bcm:Bcenmc03_1285 HK97 family phage prohead protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; phage prohead protease, hk97 family complement(1507547..1508095) Alicycliphilus denitrificans BC 10103472 YP_004126085.1 CDS Alide_1436 NC_014910.1 1508106 1509332 R KEGG: bcm:Bcenmc03_1284 major capsid protein HK97; major capsid protein hk97 complement(1508106..1509332) Alicycliphilus denitrificans BC 10103473 YP_004126086.1 CDS Alide_1437 NC_014910.1 1509771 1510352 R manually curated; KEGG: ajs:Ajs_1730 hypothetical protein; hypothetical protein complement(1509771..1510352) Alicycliphilus denitrificans BC 10103474 YP_004126087.1 CDS Alide_1439 NC_014910.1 1511343 1511666 D PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1511343..1511666 Alicycliphilus denitrificans BC 10103476 YP_004126088.1 CDS Alide_1440 NC_014910.1 1511663 1512577 D PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 1511663..1512577 Alicycliphilus denitrificans BC 10103477 YP_004126089.1 CDS Alide_1441 NC_014910.1 1512609 1512824 R KEGG: rpi:Rpic_2748 hypothetical protein; hypothetical protein complement(1512609..1512824) Alicycliphilus denitrificans BC 10103478 YP_004126090.1 CDS Alide_1442 NC_014910.1 1512821 1513069 R PFAM: Prophage CP4-57 regulatory; KEGG: bra:BRADO6209 prophage CP4-57 regulatory protein; prophage cp4-57 regulatory complement(1512821..1513069) Alicycliphilus denitrificans BC 10103479 YP_004126091.1 CDS Alide_1443 NC_014910.1 1513127 1513936 R KEGG: tbd:Tbd_2676 hypothetical protein; hypothetical protein complement(1513127..1513936) Alicycliphilus denitrificans BC 10103480 YP_004126092.1 CDS Alide_1444 NC_014910.1 1514026 1514514 R KEGG: rpc:RPC_3988 tetratricopeptide TPR_2; hypothetical protein complement(1514026..1514514) Alicycliphilus denitrificans BC 10103481 YP_004126093.1 CDS Alide_1445 NC_014910.1 1514616 1515851 R PFAM: integrase family protein; KEGG: lch:Lcho_2200 integrase family protein; integrase family protein complement(1514616..1515851) Alicycliphilus denitrificans BC 10103482 YP_004126094.1 CDS Alide_1446 NC_014910.1 1516206 1518056 R KEGG: ajs:Ajs_2610 peptidase M14, carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; peptidase m14 carboxypeptidase a complement(1516206..1518056) Alicycliphilus denitrificans BC 10103484 YP_004126095.1 CDS Alide_1447 NC_014910.1 1518157 1519851 R KEGG: ajs:Ajs_2609 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; dead/deah box helicase domain-containing protein complement(1518157..1519851) Alicycliphilus denitrificans BC 10103485 YP_004126096.1 CDS Alide_1448 NC_014910.1 1520109 1521770 D KEGG: dia:Dtpsy_1200 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1520109..1521770 Alicycliphilus denitrificans BC 10103486 YP_004126097.1 CDS Alide_1449 NC_014910.1 1521777 1523108 R KEGG: ajs:Ajs_2606 TRAP transporter solute receptor TAXI family protein; trap transporter solute receptor taxi family protein complement(1521777..1523108) Alicycliphilus denitrificans BC 10103487 YP_004126098.1 CDS Alide_1450 NC_014910.1 1523115 1524128 R PFAM: peptidase S58 DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA; peptidase s58 dmpa complement(1523115..1524128) Alicycliphilus denitrificans BC 10103488 YP_004126099.1 CDS Alide_1451 NC_014910.1 1524167 1524646 R PFAM: protein of unknown function DUF411; KEGG: dia:Dtpsy_1206 protein of unknown function DUF411; hypothetical protein complement(1524167..1524646) Alicycliphilus denitrificans BC 10103489 YP_004126100.1 CDS Alide_1452 NC_014910.1 1524673 1525158 R PFAM: blue (type 1) copper domain protein; KEGG: ajs:Ajs_2601 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein complement(1524673..1525158) Alicycliphilus denitrificans BC 10103490 YP_004126101.1 CDS Alide_1453 NC_014910.1 1525259 1525606 R KEGG: dia:Dtpsy_1211 hypothetical protein; hypothetical protein complement(1525259..1525606) Alicycliphilus denitrificans BC 10103491 YP_004126102.1 CDS Alide_1454 NC_014910.1 1525624 1526250 R KEGG: dia:Dtpsy_1212 protein of unknown function DUF161; manually curated; PFAM: protein of unknown function DUF161; hypothetical protein complement(1525624..1526250) Alicycliphilus denitrificans BC 10103492 YP_004126103.1 CDS Alide_1455 NC_014910.1 1526397 1528412 R KEGG: ajs:Ajs_2594 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase complement(1526397..1528412) Alicycliphilus denitrificans BC 10103493 YP_004126104.1 CDS Alide_1456 NC_014910.1 1528453 1528911 D KEGG: dia:Dtpsy_1215 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 1528453..1528911 Alicycliphilus denitrificans BC 10103494 YP_004126105.1 CDS Alide_1457 NC_014910.1 1529012 1529827 D PFAM: protein of unknown function DUF140; KEGG: dia:Dtpsy_1216 protein of unknown function DUF140; hypothetical protein 1529012..1529827 Alicycliphilus denitrificans BC 10103495 YP_004126106.1 CDS Alide_1458 NC_014910.1 1529849 1530832 D PFAM: Mammalian cell entry related domain protein; KEGG: dia:Dtpsy_1217 mammalian cell entry related domain protein; mammalian cell entry related domain-containing protein 1529849..1530832 Alicycliphilus denitrificans BC 10103496 YP_004126107.1 CDS Alide_1459 NC_014910.1 1530996 1531679 D KEGG: dia:Dtpsy_1218 hypothetical protein; hypothetical protein 1530996..1531679 Alicycliphilus denitrificans BC 10103497 YP_004126108.1 CDS Alide_1460 NC_014910.1 1531661 1532494 R KEGG: vap:Vapar_0122 hypothetical protein; hypothetical protein complement(1531661..1532494) Alicycliphilus denitrificans BC 10103498 YP_004126109.1 CDS Alide_1461 NC_014910.1 1532518 1534044 R KEGG: ajs:Ajs_2588 carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain-containing protein; carbohydrate kinase complement(1532518..1534044) Alicycliphilus denitrificans BC 10103499 YP_004126110.1 CDS Alide_1462 NC_014910.1 1534074 1535315 R KEGG: ajs:Ajs_2587 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase complement(1534074..1535315) Alicycliphilus denitrificans BC 10103500 YP_004126111.1 CDS Alide_1463 NC_014910.1 1535370 1536716 R PFAM: Amidase; KEGG: ajs:Ajs_2586 amidase; amidase complement(1535370..1536716) Alicycliphilus denitrificans BC 10103501 YP_004126112.1 CDS Alide_1464 NC_014910.1 1536935 1537687 D KEGG: ajs:Ajs_2585 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; 30S ribosomal protein S2 1536935..1537687 Alicycliphilus denitrificans BC 10103502 YP_004126113.1 CDS Alide_1465 NC_014910.1 1537802 1538698 D KEGG: dia:Dtpsy_1224 elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; translation elongation factor ts 1537802..1538698 Alicycliphilus denitrificans BC 10103503 YP_004126114.1 CDS Alide_1466 NC_014910.1 1538752 1539474 D KEGG: dia:Dtpsy_1225 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase 1538752..1539474 Alicycliphilus denitrificans BC 10103504 YP_004126115.1 CDS Alide_1467 NC_014910.1 1539524 1540084 D KEGG: dia:Dtpsy_1226 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; ribosome recycling factor 1539524..1540084 Alicycliphilus denitrificans BC 10103505 YP_004126116.1 CDS Alide_1468 NC_014910.1 1540096 1540833 D TIGRFAM: undecaprenyl diphosphate synthase; KEGG: dia:Dtpsy_1227 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1540096..1540833 Alicycliphilus denitrificans BC 10103506 YP_004126117.1 CDS Alide_1469 NC_014910.1 1540872 1541717 D PFAM: phosphatidate cytidylyltransferase; KEGG: dia:Dtpsy_1228 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1540872..1541717 Alicycliphilus denitrificans BC 10103507 YP_004126118.1 CDS Alide_1470 NC_014910.1 1541721 1542896 D TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: dia:Dtpsy_1229 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1541721..1542896 Alicycliphilus denitrificans BC 10103508 YP_004126119.1 CDS Alide_1471 NC_014910.1 1542999 1544360 D TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_2578 peptidase RseP; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease 1542999..1544360 Alicycliphilus denitrificans BC 10103509 YP_004126120.1 CDS Alide_1472 NC_014910.1 1544406 1546703 D KEGG: dia:Dtpsy_1231 outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; outer membrane protein assembly complex, yaet protein 1544406..1546703 Alicycliphilus denitrificans BC 10103510 YP_004126121.1 CDS Alide_1473 NC_014910.1 1546703 1547227 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: ajs:Ajs_2576 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 1546703..1547227 Alicycliphilus denitrificans BC 10103511 YP_004126122.1 CDS Alide_1474 NC_014910.1 1547256 1548254 D KEGG: dia:Dtpsy_1233 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; udp-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferase 1547256..1548254 Alicycliphilus denitrificans BC 10103512 YP_004126123.1 CDS Alide_1475 NC_014910.1 1548251 1548691 D KEGG: aav:Aave_1834 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(ACP) dehydratase FabZ 1548251..1548691 Alicycliphilus denitrificans BC 10103513 YP_004126124.1 CDS Alide_1476 NC_014910.1 1548717 1549505 D TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: ajs:Ajs_2573 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein; acyl-ACP-UDP-N- acetylglucosamine O-acyltransferase 1548717..1549505 Alicycliphilus denitrificans BC 10103514 YP_004126125.1 CDS Alide_1477 NC_014910.1 1549517 1550671 D PFAM: glycosyl transferase family 19; manually curated; KEGG: dia:Dtpsy_1236 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; lipid-A-disaccharide synthase 1549517..1550671 Alicycliphilus denitrificans BC 10103515 YP_004126126.1 CDS Alide_1478 NC_014910.1 1550646 1551266 D KEGG: dia:Dtpsy_1237 ribonuclease HII; PFAM: ribonuclease HII/HIII; ribonuclease h 1550646..1551266 Alicycliphilus denitrificans BC 10103516 YP_004126127.1 CDS Alide_1479 NC_014910.1 1551263 1552039 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dia:Dtpsy_1238 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase (spou) 1551263..1552039 Alicycliphilus denitrificans BC 10103517 YP_004126128.1 CDS Alide_1480 NC_014910.1 1552355 1553599 D PFAM: integrase family protein; KEGG: glo:Glov_1428 integrase family protein; integrase family protein 1552355..1553599 Alicycliphilus denitrificans BC 10103518 YP_004126129.1 CDS Alide_1481 NC_014910.1 1554055 1554378 D PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1554055..1554378 Alicycliphilus denitrificans BC 10103519 YP_004126130.1 CDS Alide_1482 NC_014910.1 1554375 1555289 D PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 1554375..1555289 Alicycliphilus denitrificans BC 10103520 YP_004126131.1 CDS Alide_1484 NC_014910.1 1555753 1556760 R PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: ctt:CtCNB1_2987 inositol; inositol phosphatase/fructose-16-bisphosphatase complement(1555753..1556760) Alicycliphilus denitrificans BC 10103523 YP_004126132.1 CDS Alide_1485 NC_014910.1 1556781 1559489 R KEGG: dia:Dtpsy_2249 aminopeptidase N; TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; aminopeptidase complement(1556781..1559489) Alicycliphilus denitrificans BC 10103524 YP_004126133.1 CDS Alide_1486 NC_014910.1 1559501 1560605 R manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein; peptide chain release factor 2 complement(join(1559501..1560523,1560525..1560605)) Alicycliphilus denitrificans BC 10103525 YP_004126134.1 CDS Alide_1487 NC_014910.1 1560674 1561678 R TIGRFAM: diaminopimelate dehydrogenase; KEGG: ajs:Ajs_2757 diaminopimelate dehydrogenase; PFAM: dihydrodipicolinate reductase; diaminopimelate dehydrogenase complement(1560674..1561678) Alicycliphilus denitrificans BC 10103526 YP_004126135.1 CDS Alide_1488 NC_014910.1 1561801 1562733 R PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_2246 alpha/beta hydrolase fold protein; alpha/beta hydrolase complement(1561801..1562733) Alicycliphilus denitrificans BC 10103527 YP_004126136.1 CDS Alide_1489 NC_014910.1 1562853 1564181 D PFAM: extracellular solute-binding protein family 1; KEGG: dac:Daci_4801 extracellular solute-binding protein; ABC transporter substrate-binding protein 1562853..1564181 Alicycliphilus denitrificans BC 10103528 YP_004126137.1 CDS Alide_1490 NC_014910.1 1564245 1565975 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_4800 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1564245..1565975 Alicycliphilus denitrificans BC 10103529 YP_004126138.1 CDS Alide_1491 NC_014910.1 1565979 1567064 D KEGG: dac:Daci_4799 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 1565979..1567064 Alicycliphilus denitrificans BC 10103530 YP_004126139.1 CDS Alide_1492 NC_014910.1 1567134 1568195 D PFAM: aldo/keto reductase; KEGG: ajs:Ajs_2755 aldo/keto reductase; aldo/keto reductase 1567134..1568195 Alicycliphilus denitrificans BC 10103531 YP_004126140.1 CDS Alide_1493 NC_014910.1 1568259 1568759 D KEGG: ajs:Ajs_2754 YbaK/EbsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; ybak/ebsc protein 1568259..1568759 Alicycliphilus denitrificans BC 10103532 YP_004126141.1 CDS Alide_1494 NC_014910.1 1568791 1569423 D PFAM: protein of unknown function DUF205; KEGG: dia:Dtpsy_2243 protein of unknown function DUF205; hypothetical protein 1568791..1569423 Alicycliphilus denitrificans BC 10103533 YP_004126142.1 CDS Alide_1495 NC_014910.1 1569426 1570424 R KEGG: dia:Dtpsy_2242 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(1569426..1570424) Alicycliphilus denitrificans BC 10103534 YP_004126143.1 CDS Alide_1496 NC_014910.1 1570454 1571101 R KEGG: ajs:Ajs_2751 hypothetical protein; hypothetical protein complement(1570454..1571101) Alicycliphilus denitrificans BC 10103535 YP_004126144.1 CDS Alide_1497 NC_014910.1 1571112 1571597 R PFAM: protein of unknown function DUF520; KEGG: ajs:Ajs_2750 nucleotide-binding protein; hypothetical protein complement(1571112..1571597) Alicycliphilus denitrificans BC 10103536 YP_004126145.1 CDS Alide_1498 NC_014910.1 1571662 1572750 D TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dia:Dtpsy_2239 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein; udp-n-acetylenolpyruvoylglucosamine reductase 1571662..1572750 Alicycliphilus denitrificans BC 10103537 YP_004126146.1 CDS Alide_1499 NC_014910.1 1572858 1573232 R KEGG: dac:Daci_4779 SPW repeat-containing protein; spw repeat-containing protein complement(1572858..1573232) Alicycliphilus denitrificans BC 10103538 YP_004126147.1 CDS Alide_1500 NC_014910.1 1573396 1574067 D KEGG: dia:Dtpsy_2235 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; hypothetical protein 1573396..1574067 Alicycliphilus denitrificans BC 10103539 YP_004126148.1 CDS Alide_1501 NC_014910.1 1574064 1574783 D KEGG: dia:Dtpsy_2234 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like; exoenzyme S synthesis protein B 1574064..1574783 Alicycliphilus denitrificans BC 10103540 YP_004126149.1 CDS Alide_1502 NC_014910.1 1575163 1577307 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: reu:Reut_C6172 acetone carboxylase, beta subunit; hydantoinase/oxoprolinase 1575163..1577307 Alicycliphilus denitrificans BC 10103541 YP_004126150.1 CDS Alide_1503 NC_014910.1 1577319 1579643 D PFAM: Hydantoinase B/oxoprolinase; KEGG: tmz:Tmz1t_3470 hydantoinase B/oxoprolinase; hydantoinase b/oxoprolinase 1577319..1579643 Alicycliphilus denitrificans BC 10103542 YP_004126151.1 CDS Alide_1504 NC_014910.1 1579668 1580174 D PFAM: Acetone carboxylase gamma subunit; KEGG: eba:ebA4702 acetone carboxylase gamma subunit; acetone carboxylase subunit gamma 1579668..1580174 Alicycliphilus denitrificans BC 10103543 YP_004126152.1 CDS Alide_1505 NC_014910.1 1580360 1582342 D KEGG: tmz:Tmz1t_3466 GAF modulated sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 1580360..1582342 Alicycliphilus denitrificans BC 10103544 YP_004126153.1 CDS Alide_1506 NC_014910.1 1582445 1583788 R TIGRFAM: argininosuccinate synthase; KEGG: dia:Dtpsy_2233 argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase complement(1582445..1583788) Alicycliphilus denitrificans BC 10103545 YP_004126154.1 CDS Alide_1507 NC_014910.1 1583816 1584133 R PFAM: protein of unknown function DUF1255; KEGG: dia:Dtpsy_2232 protein of unknown function DUF1255; hypothetical protein complement(1583816..1584133) Alicycliphilus denitrificans BC 10103546 YP_004126155.1 CDS Alide_1508 NC_014910.1 1584194 1584865 R KEGG: dia:Dtpsy_2231 17 kDa surface antigen; hypothetical protein complement(1584194..1584865) Alicycliphilus denitrificans BC 10103547 YP_004126156.1 CDS Alide_1509 NC_014910.1 1584986 1585372 R PFAM: arsenate reductase and related; KEGG: dia:Dtpsy_2230 arsenate reductase and related; arsenate reductase complement(1584986..1585372) Alicycliphilus denitrificans BC 10103548 YP_004126157.1 CDS Alide_1510 NC_014910.1 1585391 1586743 D TIGRFAM: FolC bifunctional protein; KEGG: ajs:Ajs_2739 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 1585391..1586743 Alicycliphilus denitrificans BC 10103549 YP_004126158.1 CDS Alide_1511 NC_014910.1 1586753 1587589 D PFAM: Sporulation domain-containing protein; KEGG: dia:Dtpsy_2228 sporulation domain protein; sporulation domain-containing protein 1586753..1587589 Alicycliphilus denitrificans BC 10103550 YP_004126159.1 CDS Alide_1512 NC_014910.1 1587603 1588091 D PFAM: Colicin V production protein; Protein of unknown function DUF2474; KEGG: dia:Dtpsy_2227 colicin V production protein; colicin v production protein 1587603..1588091 Alicycliphilus denitrificans BC 10103551 YP_004126160.1 CDS Alide_1513 NC_014910.1 1588155 1589663 D KEGG: dia:Dtpsy_2226 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; amidophosphoribosyltransferase 1588155..1589663 Alicycliphilus denitrificans BC 10103552 YP_004126161.1 CDS Alide_1514 NC_014910.1 1589792 1591006 D TIGRFAM: O-succinylhomoserine sulfhydrylase; KEGG: dac:Daci_4768 O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; o-succinylhomoserine sulfhydrylase 1589792..1591006 Alicycliphilus denitrificans BC 10103553 YP_004126162.1 CDS Alide_1515 NC_014910.1 1591003 1592406 D KEGG: dia:Dtpsy_2224 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 1591003..1592406 Alicycliphilus denitrificans BC 10103554 YP_004126163.1 CDS Alide_1516 NC_014910.1 1593200 1593958 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2108 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(1593200..1593958) Alicycliphilus denitrificans BC 10103561 YP_004126164.1 CDS Alide_1517 NC_014910.1 1594278 1594751 D KEGG: cfl:Cfla_1172 lipoate--protein ligase; hypothetical protein 1594278..1594751 Alicycliphilus denitrificans BC 10103562 YP_004126165.1 CDS Alide_1518 NC_014910.1 1594753 1595382 D manually curated; KEGG: cci:CC1G_12013 tRNA (guanine-N2-)-methyltransferase; hypothetical protein 1594753..1595382 Alicycliphilus denitrificans BC 10103563 YP_004126166.1 CDS Alide_1519 NC_014910.1 1595373 1595495 D hypothetical protein 1595373..1595495 Alicycliphilus denitrificans BC 10103564 YP_004126167.1 CDS Alide_1520 NC_014910.1 1595522 1597036 R KEGG: dia:Dtpsy_2523 transposase IS66; transposase is66 complement(1595522..1597036) Alicycliphilus denitrificans BC 10103565 YP_004126168.1 CDS Alide_1521 NC_014910.1 1597119 1597451 R PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; is66 orf2 family protein complement(1597119..1597451) Alicycliphilus denitrificans BC 10103566 YP_004126169.1 CDS Alide_1522 NC_014910.1 1597448 1597876 R PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase is3/is911 family protein complement(1597448..1597876) Alicycliphilus denitrificans BC 10103567 YP_004126170.1 CDS Alide_1523 NC_014910.1 1598218 1598979 R KEGG: cbt:CLH_2513 1,4-beta-N-acetylmuramidase; hypothetical protein complement(1598218..1598979) Alicycliphilus denitrificans BC 10103568 YP_004126171.1 CDS Alide_1524 NC_014910.1 1599009 1599821 R PFAM: Integrase catalytic region; KEGG: ajs:Ajs_3784 integrase catalytic subunit; integrase catalytic region protein complement(1599009..1599821) Alicycliphilus denitrificans BC 10103569 YP_004126172.1 CDS Alide_1525 NC_014910.1 1599839 1600105 R PFAM: transposase IS3/IS911 family protein; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911; transposase is3/is911 family protein complement(1599839..1600105) Alicycliphilus denitrificans BC 10103570 YP_004126173.1 CDS Alide_1526 NC_014910.1 1600574 1601818 R KEGG: xac:XAC3233 transposase; transposase complement(1600574..1601818) Alicycliphilus denitrificans BC 10103571 YP_004126174.1 CDS Alide_1527 NC_014910.1 1601829 1602530 R KEGG: reu:Reut_C5919 hypothetical protein; hypothetical protein complement(1601829..1602530) Alicycliphilus denitrificans BC 10103572 YP_004126175.1 CDS Alide_1528 NC_014910.1 1602530 1602829 R KEGG: mpt:Mpe_B0404 hypothetical protein; hypothetical protein complement(1602530..1602829) Alicycliphilus denitrificans BC 10103573 YP_004126176.1 CDS Alide_1529 NC_014910.1 1603005 1603586 R TIGRFAM: LexA repressor; KEGG: bpy:Bphyt_3718 LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; lexa repressor complement(1603005..1603586) Alicycliphilus denitrificans BC 10103574 YP_004126177.1 CDS Alide_1530 NC_014910.1 1603885 1604208 D PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1603885..1604208 Alicycliphilus denitrificans BC 10103575 YP_004126178.1 CDS Alide_1531 NC_014910.1 1604205 1605119 D PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 1604205..1605119 Alicycliphilus denitrificans BC 10103576 YP_004126179.1 CDS Alide_1532 NC_014910.1 1605339 1606388 R PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_1607 extracellular solute-binding protein; ABC transporter substrate-binding protein complement(1605339..1606388) Alicycliphilus denitrificans BC 10103577 YP_004126180.1 CDS Alide_1533 NC_014910.1 1606671 1607225 R KEGG: dia:Dtpsy_1366 phasin family protein; TIGRFAM: phasin family protein; PFAM: Phasin; phasin family protein complement(1606671..1607225) Alicycliphilus denitrificans BC 10103578 YP_004126181.1 CDS Alide_1534 NC_014910.1 1607483 1607956 D PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_1367 thioesterase superfamily protein; thioesterase superfamily protein 1607483..1607956 Alicycliphilus denitrificans BC 10103579 YP_004126182.1 CDS Alide_1535 NC_014910.1 1608106 1609305 D KEGG: dia:Dtpsy_1368 nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; nicotinate phosphoribosyltransferase 1608106..1609305 Alicycliphilus denitrificans BC 10103580 YP_004126183.1 CDS Alide_1536 NC_014910.1 1609353 1610765 D KEGG: ajs:Ajs_2491 transmembrane protein; transmembrane protein 1609353..1610765 Alicycliphilus denitrificans BC 10103581 YP_004126184.1 CDS Alide_1537 NC_014910.1 1610782 1611762 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dia:Dtpsy_1370 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 1610782..1611762 Alicycliphilus denitrificans BC 10103582 YP_004126185.1 CDS Alide_1538 NC_014910.1 1611836 1613434 D PFAM: protein of unknown function DUF195; KEGG: azo:azo2787 RumC-like protein; hypothetical protein 1611836..1613434 Alicycliphilus denitrificans BC 10103583 YP_004126186.1 CDS Alide_1539 NC_014910.1 1613431 1614594 D PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_1372 major facilitator superfamily MFS_1; major facilitator superfamily protein 1613431..1614594 Alicycliphilus denitrificans BC 10103584 YP_004126187.1 CDS Alide_1540 NC_014910.1 1614609 1615472 R PFAM: Conserved hypothetical protein CHP00730; KEGG: ajs:Ajs_2487 hypothetical protein; hypothetical protein complement(1614609..1615472) Alicycliphilus denitrificans BC 10103585 YP_004126188.1 CDS Alide_1541 NC_014910.1 1615602 1615997 R KEGG: dia:Dtpsy_1374 camphor resistance protein CrcB; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; crcb protein complement(1615602..1615997) Alicycliphilus denitrificans BC 10103586 YP_004126189.1 CDS Alide_1542 NC_014910.1 1616021 1617796 R PFAM: peptidase M14 carboxypeptidase A; KEGG: dia:Dtpsy_1379 hypothetical protein; peptidase m14 carboxypeptidase a complement(1616021..1617796) Alicycliphilus denitrificans BC 10103587 YP_004126190.1 CDS Alide_1543 NC_014910.1 1617799 1618170 R PFAM: Na+/H+ antiporter subunit; KEGG: dia:Dtpsy_1381 Na+/H+ antiporter subunit; na+/h+ antiporter subunit complement(1617799..1618170) Alicycliphilus denitrificans BC 10103588 YP_004126191.1 CDS Alide_1544 NC_014910.1 1618167 1618448 R PFAM: multiple resistance and pH regulation protein F; KEGG: dia:Dtpsy_1382 multiple resistance and pH regulation protein F; multiple resistance and ph regulation protein f complement(1618167..1618448) Alicycliphilus denitrificans BC 10103589 YP_004126192.1 CDS Alide_1545 NC_014910.1 1618445 1618936 R PFAM: cation antiporter; KEGG: dia:Dtpsy_1383 monovalent cation/H+ antiporter subunit E; cation antiporter complement(1618445..1618936) Alicycliphilus denitrificans BC 10103590 YP_004126193.1 CDS Alide_1546 NC_014910.1 1618933 1620645 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ajs:Ajs_2476 monovalent cation/H+ antiporter subunit D; NADH/ubiquinone/plastoquinone (complex i) complement(1618933..1620645) Alicycliphilus denitrificans BC 10103591 YP_004126194.1 CDS Alide_1547 NC_014910.1 1620707 1621072 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dia:Dtpsy_1385 monovalent cation/H+ antiporter subunit C; NADH-ubiquinone oxidoreductase subunit 4L complement(1620707..1621072) Alicycliphilus denitrificans BC 10103592 YP_004126195.1 CDS Alide_1548 NC_014910.1 1621073 1624033 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: dia:Dtpsy_1386 monovalent cation/H+ antiporter subunit A; NADH/ubiquinone/plastoquinone (complex i) complement(1621073..1624033) Alicycliphilus denitrificans BC 10103593 YP_004126196.1 CDS Alide_1549 NC_014910.1 1624122 1624442 R KEGG: ajs:Ajs_2473 hypothetical protein; hypothetical protein complement(1624122..1624442) Alicycliphilus denitrificans BC 10103594 YP_004126197.1 CDS Alide_1551 NC_014910.1 1625590 1625901 R KEGG: dia:Dtpsy_1389 hypothetical protein; hypothetical protein complement(1625590..1625901) Alicycliphilus denitrificans BC 10103596 YP_004126198.1 CDS Alide_1552 NC_014910.1 1626107 1626892 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dia:Dtpsy_2031 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1626107..1626892) Alicycliphilus denitrificans BC 10103597 YP_004126199.1 CDS Alide_1553 NC_014910.1 1626959 1627237 R PFAM: BolA family protein; KEGG: dia:Dtpsy_2030 BolA family protein; bola family protein complement(1626959..1627237) Alicycliphilus denitrificans BC 10103598 YP_004126200.1 CDS Alide_1554 NC_014910.1 1627234 1627791 R KEGG: ajs:Ajs_1675 intracellular septation protein A; TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; intracellular septation protein a complement(1627234..1627791) Alicycliphilus denitrificans BC 10103599 YP_004126201.1 CDS Alide_1555 NC_014910.1 1627788 1628201 R TIGRFAM: methionine-R-sulfoxide reductase; KEGG: dia:Dtpsy_2028 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-r-sulfoxide reductase complement(1627788..1628201) Alicycliphilus denitrificans BC 10103600 YP_004126202.1 CDS Alide_1558 NC_014910.1 1630768 1632003 D PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2025 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 1630768..1632003 Alicycliphilus denitrificans BC 10103603 YP_004126203.1 CDS Alide_1559 NC_014910.1 1632077 1633030 D PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2024 inner-membrane translocator; inner-membrane translocator 1632077..1633030 Alicycliphilus denitrificans BC 10103604 YP_004126204.1 CDS Alide_1560 NC_014910.1 1633035 1634369 D PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2023 inner-membrane translocator; inner-membrane translocator 1633035..1634369 Alicycliphilus denitrificans BC 10103605 YP_004126205.1 CDS Alide_1561 NC_014910.1 1634366 1635154 D KEGG: dia:Dtpsy_2022 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1634366..1635154 Alicycliphilus denitrificans BC 10103606 YP_004126206.1 CDS Alide_1562 NC_014910.1 1635154 1635849 D KEGG: dia:Dtpsy_2021 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1635154..1635849 Alicycliphilus denitrificans BC 10103607 YP_004126207.1 CDS Alide_1563 NC_014910.1 1636044 1638143 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_1684 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 1636044..1638143 Alicycliphilus denitrificans BC 10103608 YP_004126208.1 CDS Alide_1564 NC_014910.1 1638178 1639347 D TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_2019 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 1638178..1639347 Alicycliphilus denitrificans BC 10103609 YP_004126209.1 CDS Alide_1565 NC_014910.1 1639575 1640477 D KEGG: ctt:CtCNB1_1865 glutamate-binding protein precursor; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 1639575..1640477 Alicycliphilus denitrificans BC 10103610 YP_004126210.1 CDS Alide_1566 NC_014910.1 1640481 1641143 D KEGG: dac:Daci_4388 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1640481..1641143 Alicycliphilus denitrificans BC 10103611 YP_004126211.1 CDS Alide_1567 NC_014910.1 1641140 1641940 D KEGG: ctt:CtCNB1_1867 amino acid ABC transporter, permease protein PEB1; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1641140..1641940 Alicycliphilus denitrificans BC 10103612 YP_004126212.1 CDS Alide_1568 NC_014910.1 1642373 1644274 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2017 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 1642373..1644274 Alicycliphilus denitrificans BC 10103613 YP_004126213.1 CDS Alide_1569 NC_014910.1 1644307 1644810 D PFAM: flavodoxin/nitric oxide synthase; KEGG: dia:Dtpsy_2016 NAD(P)H dehydrogenase (quinone); flavodoxin/nitric oxide synthase 1644307..1644810 Alicycliphilus denitrificans BC 10103614 YP_004126214.1 CDS Alide_1570 NC_014910.1 1645051 1645899 D KEGG: bpt:Bpet3196 hypothetical protein; manually curated; PFAM: protein of unknown function DUF6 transmembrane; hypothetical protein 1645051..1645899 Alicycliphilus denitrificans BC 10103615 YP_004126215.1 CDS Alide_1571 NC_014910.1 1646348 1646500 R KEGG: psa:PST_2393 NAD-specific glutamate dehydrogenase; hypothetical protein complement(1646348..1646500) Alicycliphilus denitrificans BC 10103617 YP_004126216.1 CDS Alide_1572 NC_014910.1 1646493 1646921 R KEGG: eli:ELI_12715 phosphoribosylamine--glycine ligase; hypothetical protein complement(1646493..1646921) Alicycliphilus denitrificans BC 10103618 YP_004126217.1 CDS Alide_1573 NC_014910.1 1646978 1647124 R hypothetical protein complement(1646978..1647124) Alicycliphilus denitrificans BC 10103619 YP_004126218.1 CDS Alide_1574 NC_014910.1 1647121 1647537 R KEGG: bvi:Bcep1808_6849 hypothetical protein; manually curated; PFAM: VRR-NUC domain-containing protein; vrr-nuc domain-containing protein complement(1647121..1647537) Alicycliphilus denitrificans BC 10103620 YP_004126219.1 CDS Alide_1575 NC_014910.1 1647578 1649530 R PFAM: Primase 2; KEGG: tin:Tint_1139 primase 2; primase 2 complement(1647578..1649530) Alicycliphilus denitrificans BC 10103621 YP_004126220.1 CDS Alide_1576 NC_014910.1 1649530 1649817 R KEGG: ddr:Deide_01150 glutaminyl-tRNA synthetase; hypothetical protein complement(1649530..1649817) Alicycliphilus denitrificans BC 10103622 YP_004126221.1 CDS Alide_1577 NC_014910.1 1649814 1650167 R KEGG: vap:Vapar_3800 hypothetical protein; hypothetical protein complement(1649814..1650167) Alicycliphilus denitrificans BC 10103623 YP_004126222.1 CDS Alide_1578 NC_014910.1 1650248 1650499 R KEGG: ajs:Ajs_3336 hypothetical protein; hypothetical protein complement(1650248..1650499) Alicycliphilus denitrificans BC 10103624 YP_004126223.1 CDS Alide_1579 NC_014910.1 1650604 1651428 R KEGG: pna:Pnap_0969 hypothetical protein; hypothetical protein complement(1650604..1651428) Alicycliphilus denitrificans BC 10103625 YP_004126224.1 CDS Alide_1580 NC_014910.1 1651537 1652871 R PFAM: integrase family protein; KEGG: tin:Tint_1145 integrase family protein; integrase family protein complement(1651537..1652871) Alicycliphilus denitrificans BC 10103626 YP_004126225.1 CDS Alide_1581 NC_014910.1 1653351 1654697 R KEGG: dia:Dtpsy_1835 type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; type I secretion outer membrane protein complement(1653351..1654697) Alicycliphilus denitrificans BC 10103627 YP_004126226.1 CDS Alide_1582 NC_014910.1 1654714 1655052 R SMART: Rhodanese domain protein; KEGG: dia:Dtpsy_1836 rhodanese domain protein; rhodanese domain-containing protein complement(1654714..1655052) Alicycliphilus denitrificans BC 10103628 YP_004126227.1 CDS Alide_1583 NC_014910.1 1655071 1655781 R PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_1837 protein-L-isoaspartate(D-aspartate) O-methyltransferase; SMART: Ribosomal RNA adenine methylase transferase-like; protein-l-isoaspartate(d-aspartate) o-methyltransferase complement(1655071..1655781) Alicycliphilus denitrificans BC 10103629 YP_004126228.1 CDS Alide_1584 NC_014910.1 1655832 1656494 R PFAM: regulatory protein TetR; KEGG: ajs:Ajs_2029 TetR family transcriptional regulator; regulatory protein tetr complement(1655832..1656494) Alicycliphilus denitrificans BC 10103630 YP_004126229.1 CDS Alide_1585 NC_014910.1 1656643 1657191 D TIGRFAM: peptide methionine sulfoxide reductase; KEGG: ajs:Ajs_2030 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 1656643..1657191 Alicycliphilus denitrificans BC 10103631 YP_004126230.1 CDS Alide_1586 NC_014910.1 1657216 1657599 D KEGG: ajs:Ajs_2032 hypothetical protein; hypothetical protein 1657216..1657599 Alicycliphilus denitrificans BC 10103632 YP_004126231.1 CDS Alide_1587 NC_014910.1 1657772 1659823 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dia:Dtpsy_1842 TonB-dependent receptor; tonb-dependent receptor 1657772..1659823 Alicycliphilus denitrificans BC 10103633 YP_004126232.1 CDS Alide_1588 NC_014910.1 1660326 1661198 D KEGG: ajs:Ajs_2034 hypothetical protein; hypothetical protein 1660326..1661198 Alicycliphilus denitrificans BC 10103634 YP_004126233.1 CDS Alide_1589 NC_014910.1 1661250 1662470 D KEGG: ajs:Ajs_2035 chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter 1661250..1662470 Alicycliphilus denitrificans BC 10103635 YP_004126234.1 CDS Alide_1590 NC_014910.1 1662602 1663540 D PFAM: Auxin Efflux Carrier; KEGG: dia:Dtpsy_1882 auxin efflux carrier; auxin efflux carrier 1662602..1663540 Alicycliphilus denitrificans BC 10103636 YP_004126235.1 CDS Alide_1591 NC_014910.1 1663533 1664195 R TIGRFAM: pyridoxamine 5'-phosphate oxidase; KEGG: dia:Dtpsy_1881 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase complement(1663533..1664195) Alicycliphilus denitrificans BC 10103637 YP_004126236.1 CDS Alide_1592 NC_014910.1 1664212 1664805 R PFAM: ChaC family protein; KEGG: dia:Dtpsy_1879 ChaC family protein; chac family protein complement(1664212..1664805) Alicycliphilus denitrificans BC 10103638 YP_004126237.1 CDS Alide_1593 NC_014910.1 1664868 1665389 D PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein; ompa/motb domain-containing protein 1664868..1665389 Alicycliphilus denitrificans BC 10103639 YP_004126238.1 CDS Alide_1594 NC_014910.1 1665438 1666484 R PFAM: protein of unknown function DUF72; KEGG: dia:Dtpsy_1999 protein of unknown function DUF72; hypothetical protein complement(1665438..1666484) Alicycliphilus denitrificans BC 10103640 YP_004126239.1 CDS Alide_1595 NC_014910.1 1666485 1666889 R KEGG: dia:Dtpsy_1998 hypothetical protein; hypothetical protein complement(1666485..1666889) Alicycliphilus denitrificans BC 10103641 YP_004126240.1 CDS Alide_1596 NC_014910.1 1666982 1669366 D KEGG: ajs:Ajs_1707 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; tex-like protein 1666982..1669366 Alicycliphilus denitrificans BC 10103642 YP_004126241.1 CDS Alide_1597 NC_014910.1 1669382 1670356 R KEGG: bbr:BB0544 hypothetical protein; hypothetical protein complement(1669382..1670356) Alicycliphilus denitrificans BC 10103643 YP_004126242.1 CDS Alide_1598 NC_014910.1 1670379 1670777 R PFAM: protein of unknown function DUF35; KEGG: bbr:BB0545 hypothetical protein; hypothetical protein complement(1670379..1670777) Alicycliphilus denitrificans BC 10103644 YP_004126243.1 CDS Alide_1599 NC_014910.1 1670774 1671955 R KEGG: bbr:BB0546 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase complement(1670774..1671955) Alicycliphilus denitrificans BC 10103645 YP_004126244.1 CDS Alide_1600 NC_014910.1 1671952 1672935 R KEGG: reu:Reut_A0842 hypothetical protein; hypothetical protein complement(1671952..1672935) Alicycliphilus denitrificans BC 10103646 YP_004126245.1 CDS Alide_1601 NC_014910.1 1672973 1673773 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpd:RPD_4223 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(1672973..1673773) Alicycliphilus denitrificans BC 10103647 YP_004126246.1 CDS Alide_1602 NC_014910.1 1673800 1675356 R PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB0547 ligase; AMP-dependent synthetase/ligase complement(1673800..1675356) Alicycliphilus denitrificans BC 10103648 YP_004126247.1 CDS Alide_1603 NC_014910.1 1675362 1676354 R KEGG: bbr:BB0564 hypothetical protein; hypothetical protein complement(1675362..1676354) Alicycliphilus denitrificans BC 10103649 YP_004126248.1 CDS Alide_1604 NC_014910.1 1676445 1677452 D KEGG: bbr:BB0548 LacI family regulatory protein; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; regulatory protein laci 1676445..1677452 Alicycliphilus denitrificans BC 10103650 YP_004126249.1 CDS Alide_1605 NC_014910.1 1677543 1678394 R PFAM: Citrate synthase; KEGG: rme:Rmet_4144 citrate synthase; citrate synthase complement(1677543..1678394) Alicycliphilus denitrificans BC 10103651 YP_004126250.1 CDS Alide_1606 NC_014910.1 1678391 1679593 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B4958 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f complement(1678391..1679593) Alicycliphilus denitrificans BC 10103652 YP_004126251.1 CDS Alide_1607 NC_014910.1 1679596 1680561 R KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein complement(1679596..1680561) Alicycliphilus denitrificans BC 10103653 YP_004126252.1 CDS Alide_1608 NC_014910.1 1680594 1681553 R KEGG: rme:Rmet_4146 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein complement(1680594..1681553) Alicycliphilus denitrificans BC 10103654 YP_004126253.1 CDS Alide_1609 NC_014910.1 1681604 1682614 R PFAM: amidohydrolase 2; KEGG: bam:Bamb_4804 amidohydrolase 2; amidohydrolase complement(1681604..1682614) Alicycliphilus denitrificans BC 10103655 YP_004126254.1 CDS Alide_1610 NC_014910.1 1682763 1683473 D KEGG: cti:pRALTA_0434 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 1682763..1683473 Alicycliphilus denitrificans BC 10103656 YP_004126255.1 CDS Alide_1611 NC_014910.1 1683529 1684362 D PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_1708 signal transduction protein; metal-dependent hydrolase hdod 1683529..1684362 Alicycliphilus denitrificans BC 10103657 YP_004126256.1 CDS Alide_1612 NC_014910.1 1684458 1685333 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ajs:Ajs_1712 hydratase/decarboxylase; fumarylacetoacetate (faa) hydrolase 1684458..1685333 Alicycliphilus denitrificans BC 10103658 YP_004126257.1 CDS Alide_1613 NC_014910.1 1685346 1686329 D KEGG: ajs:Ajs_1713 alpha/beta hydrolase domain-containing protein; alpha/beta hydrolase 1685346..1686329 Alicycliphilus denitrificans BC 10103659 YP_004126258.1 CDS Alide_1614 NC_014910.1 1686339 1687199 D PFAM: thioesterase superfamily protein; GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_1990 thioesterase superfamily protein; thioesterase superfamily protein 1686339..1687199 Alicycliphilus denitrificans BC 10103660 YP_004126259.1 CDS Alide_1615 NC_014910.1 1687203 1687784 R PFAM: protein of unknown function DUF336; KEGG: dac:Daci_1203 hypothetical protein; hypothetical protein complement(1687203..1687784) Alicycliphilus denitrificans BC 10103661 YP_004126260.1 CDS Alide_1616 NC_014910.1 1687809 1688453 R KEGG: dac:Daci_1204 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver complement(1687809..1688453) Alicycliphilus denitrificans BC 10103662 YP_004126261.1 CDS Alide_1617 NC_014910.1 1688450 1689931 R KEGG: dac:Daci_1205 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein complement(1688450..1689931) Alicycliphilus denitrificans BC 10103663 YP_004126262.1 CDS Alide_1618 NC_014910.1 1689954 1691147 R PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_2202 major facilitator transporter; major facilitator superfamily protein complement(1689954..1691147) Alicycliphilus denitrificans BC 10103664 YP_004126263.1 CDS Alide_1619 NC_014910.1 1691140 1691631 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dia:Dtpsy_2009 CMP/dCMP deaminase zinc-binding; cmp/dcmp deaminase zinc-binding protein complement(1691140..1691631) Alicycliphilus denitrificans BC 10103665 YP_004126264.1 CDS Alide_1620 NC_014910.1 1691665 1692606 R KEGG: ajs:Ajs_1715 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; folate-binding protein ygfz complement(1691665..1692606) Alicycliphilus denitrificans BC 10103666 YP_004126265.1 CDS Alide_1621 NC_014910.1 1692653 1693648 D PFAM: aminodeoxychorismate lyase; KEGG: ajs:Ajs_1716 aminodeoxychorismate lyase; aminodeoxychorismate lyase 1692653..1693648 Alicycliphilus denitrificans BC 10103667 YP_004126266.1 CDS Alide_1622 NC_014910.1 1693645 1694301 D TIGRFAM: thymidylate kinase; KEGG: dia:Dtpsy_1987 thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 1693645..1694301 Alicycliphilus denitrificans BC 10103668 YP_004126267.1 CDS Alide_1623 NC_014910.1 1694298 1695293 D KEGG: ajs:Ajs_1718 DNA-directed DNA polymerase; DNA-directed DNA polymerase 1694298..1695293 Alicycliphilus denitrificans BC 10103669 YP_004126268.1 CDS Alide_1624 NC_014910.1 1695310 1695669 D PFAM: type IV pilus assembly PilZ; KEGG: dia:Dtpsy_1985 type IV pilus assembly PilZ; type IV pilus assembly pilz 1695310..1695669 Alicycliphilus denitrificans BC 10103670 YP_004126269.1 CDS Alide_1625 NC_014910.1 1695731 1696540 D KEGG: ajs:Ajs_1720 TatD family hydrolase; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; hydrolase, tatd family 1695731..1696540 Alicycliphilus denitrificans BC 10103671 YP_004126270.1 CDS Alide_1626 NC_014910.1 1696537 1697217 D KEGG: dia:Dtpsy_1983 ankyrin; hypothetical protein 1696537..1697217 Alicycliphilus denitrificans BC 10103672 YP_004126271.1 CDS Alide_1627 NC_014910.1 1697412 1697657 D KEGG: hoh:Hoch_1597 hypothetical protein; hypothetical protein 1697412..1697657 Alicycliphilus denitrificans BC 10103673 YP_004126272.1 CDS Alide_1628 NC_014910.1 1697689 1698906 D KEGG: app:CAP2UW1_0424 hypothetical protein; hypothetical protein 1697689..1698906 Alicycliphilus denitrificans BC 10103674 YP_004126273.1 CDS Alide_1629 NC_014910.1 1698910 1699587 R KEGG: aav:Aave_3515 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(1698910..1699587) Alicycliphilus denitrificans BC 10103675 YP_004126274.1 CDS Alide_1630 NC_014910.1 1699851 1701098 D PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_B1760 major facilitator superfamily transporter AAHS family protein; major facilitator superfamily protein 1699851..1701098 Alicycliphilus denitrificans BC 10103676 YP_004126275.1 CDS Alide_1631 NC_014910.1 1701126 1701887 D PFAM: LamB/YcsF family protein; KEGG: aav:Aave_3513 LamB/YcsF family protein; lamb/ycsf family protein 1701126..1701887 Alicycliphilus denitrificans BC 10103677 YP_004126276.1 CDS Alide_1632 NC_014910.1 1701910 1702722 D PFAM: protein of unknown function DUF1445; KEGG: reh:H16_B1759 hypothetical protein; hypothetical protein 1701910..1702722 Alicycliphilus denitrificans BC 10103678 YP_004126277.1 CDS Alide_1633 NC_014910.1 1702730 1704331 D SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: urea amidolyase related protein; KEGG: reu:Reut_A2450 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; urea amidolyase 1702730..1704331 Alicycliphilus denitrificans BC 10103679 YP_004126278.1 CDS Alide_1634 NC_014910.1 1704325 1706067 D PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: dac:Daci_5726 carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthase l chain ATP-binding protein 1704325..1706067 Alicycliphilus denitrificans BC 10103680 YP_004126279.1 CDS Alide_1635 NC_014910.1 1706130 1707911 R TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dia:Dtpsy_1982 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; SMART: AAA ATPase; lipid a ABC transporter ATPase/inner membrane protein complement(1706130..1707911) Alicycliphilus denitrificans BC 10103681 YP_004126280.1 CDS Alide_1636 NC_014910.1 1708045 1709367 D KEGG: dia:Dtpsy_1981 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain-containing protein; WD40-like beta Propeller containing protein; tol-pal system beta propeller repeat protein TolB 1708045..1709367 Alicycliphilus denitrificans BC 10103682 YP_004126281.1 CDS Alide_1637 NC_014910.1 1709411 1709953 D KEGG: dia:Dtpsy_1980 peptidoglycan-associated lipoprotein; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 1709411..1709953 Alicycliphilus denitrificans BC 10103683 YP_004126282.1 CDS Alide_1638 NC_014910.1 1709953 1710741 D TIGRFAM: tol-pal system protein YbgF; KEGG: ajs:Ajs_1725 TPR repeat-containing protein; tol-pal system protein ybgf 1709953..1710741 Alicycliphilus denitrificans BC 10103684 YP_004126283.1 CDS Alide_1639 NC_014910.1 1710750 1711514 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: aav:Aave_3403 UBA/ThiF-type NAD/FAD binding protein; uba/thif-type nad/fad binding protein 1710750..1711514 Alicycliphilus denitrificans BC 10103685 YP_004126284.1 CDS Alide_1640 NC_014910.1 1711662 1712675 R PFAM: integrase family protein; KEGG: hse:Hsero_0876 site-specific phage recombinase/integrase; integrase family protein complement(1711662..1712675) Alicycliphilus denitrificans BC 10103687 YP_004126285.1 CDS Alide_1641 NC_014910.1 1713077 1713679 R manually curated; KEGG: rpt:Rpal_3050 hypothetical protein; hypothetical protein complement(1713077..1713679) Alicycliphilus denitrificans BC 10103688 YP_004126286.1 CDS Alide_1642 NC_014910.1 1713776 1713994 R KEGG: pan:PODANSg1201 hypothetical protein; hypothetical protein complement(1713776..1713994) Alicycliphilus denitrificans BC 10103689 YP_004126287.1 CDS Alide_1643 NC_014910.1 1713987 1714727 R KEGG: bph:Bphy_1918 hypothetical protein; hypothetical protein complement(1713987..1714727) Alicycliphilus denitrificans BC 10103690 YP_004126288.1 CDS Alide_1644 NC_014910.1 1714724 1714933 R KEGG: spx:SPG_1105 hypothetical protein; hypothetical protein complement(1714724..1714933) Alicycliphilus denitrificans BC 10103691 YP_004126289.1 CDS Alide_1645 NC_014910.1 1714923 1715348 R KEGG: mes:Meso_1184 hypothetical protein; hypothetical protein complement(1714923..1715348) Alicycliphilus denitrificans BC 10103692 YP_004126290.1 CDS Alide_1646 NC_014910.1 1715345 1715581 R KEGG: scb:SCAB_33391 hypothetical protein; hypothetical protein complement(1715345..1715581) Alicycliphilus denitrificans BC 10103693 YP_004126291.1 CDS Alide_1647 NC_014910.1 1715612 1716016 R KEGG: dac:Daci_3203 hypothetical protein; hypothetical protein complement(1715612..1716016) Alicycliphilus denitrificans BC 10103694 YP_004126292.1 CDS Alide_1648 NC_014910.1 1716016 1716663 R PFAM: YqaJ viral recombinase family; KEGG: dac:Daci_1915 exonuclease, phage-type; yqaj viral recombinase family complement(1716016..1716663) Alicycliphilus denitrificans BC 10103695 YP_004126293.1 CDS Alide_1649 NC_014910.1 1716660 1717478 R PFAM: ERF family protein; KEGG: mrd:Mrad2831_5739 ERF family protein; erf family protein complement(1716660..1717478) Alicycliphilus denitrificans BC 10103696 YP_004126294.1 CDS Alide_1650 NC_014910.1 1717590 1717691 R hypothetical protein complement(1717590..1717691) Alicycliphilus denitrificans BC 10103697 YP_004126295.1 CDS Alide_1651 NC_014910.1 1717688 1717945 R KEGG: dac:Daci_1917 hypothetical protein; hypothetical protein complement(1717688..1717945) Alicycliphilus denitrificans BC 10103698 YP_004126296.1 CDS Alide_1652 NC_014910.1 1717942 1718136 R KEGG: sml:Smlt2731 general secretion pathway protein H; hypothetical protein complement(1717942..1718136) Alicycliphilus denitrificans BC 10103699 YP_004126297.1 CDS Alide_1653 NC_014910.1 1718365 1718586 R KEGG: bta:505723 La ribonucleoprotein domain family, member 4B; la ribonucleoprotein family protein complement(1718365..1718586) Alicycliphilus denitrificans BC 10103700 YP_004126298.1 CDS Alide_1654 NC_014910.1 1719473 1719718 R KEGG: tgr:Tgr7_1656 hypothetical protein; hypothetical protein complement(1719473..1719718) Alicycliphilus denitrificans BC 10103701 YP_004126299.1 CDS Alide_1655 NC_014910.1 1719747 1720067 R KEGG: pag:PLES_07901 hypothetical protein; hypothetical protein complement(1719747..1720067) Alicycliphilus denitrificans BC 10103702 YP_004126300.1 CDS Alide_1656 NC_014910.1 1720538 1721392 D KEGG: vha:VIBHAR_02019 hypothetical protein; hypothetical protein 1720538..1721392 Alicycliphilus denitrificans BC 10103703 YP_004126301.1 CDS Alide_1657 NC_014910.1 1721458 1721697 D KEGG: vap:Vapar_6373 hypothetical protein; hypothetical protein 1721458..1721697 Alicycliphilus denitrificans BC 10103704 YP_004126302.1 CDS Alide_1658 NC_014910.1 1721814 1723001 D KEGG: tmz:Tmz1t_0111 hypothetical protein; hypothetical protein 1721814..1723001 Alicycliphilus denitrificans BC 10103705 YP_004126303.1 CDS Alide_1659 NC_014910.1 1723072 1723551 R KEGG: vap:Vapar_4558 nuclease (SNase domain protein); PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); nuclease (snase domain-containing protein) complement(1723072..1723551) Alicycliphilus denitrificans BC 10103706 YP_004126304.1 CDS Alide_1660 NC_014910.1 1723554 1724177 R PFAM: protein of unknown function DUF1555; KEGG: gsu:GSU1949 hypothetical protein; hypothetical protein complement(1723554..1724177) Alicycliphilus denitrificans BC 10103707 YP_004126305.1 CDS Alide_1662 NC_014910.1 1725180 1725950 R PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: aav:Aave_1607 prophage repressor; peptidase s24/s26a/s26b complement(1725180..1725950) Alicycliphilus denitrificans BC 10103709 YP_004126306.1 CDS Alide_1663 NC_014910.1 1725964 1726182 D KEGG: mbn:Mboo_1574 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1725964..1726182 Alicycliphilus denitrificans BC 10103710 YP_004126307.1 CDS Alide_1664 NC_014910.1 1726206 1726451 R KEGG: chl:Chy400_3663 secretion protein HlyD family protein; hypothetical protein complement(1726206..1726451) Alicycliphilus denitrificans BC 10103711 YP_004126308.1 CDS Alide_1665 NC_014910.1 1726611 1726979 D KEGG: pca:Pcar_1084 transposase and inactivated derivatives; hypothetical protein 1726611..1726979 Alicycliphilus denitrificans BC 10103712 YP_004126309.1 CDS Alide_1666 NC_014910.1 1726976 1727167 D hypothetical protein 1726976..1727167 Alicycliphilus denitrificans BC 10103713 YP_004126310.1 CDS Alide_1667 NC_014910.1 1727169 1727369 D KEGG: scb:SCAB_27931 neutral zinc metalloprotease; neutral zinc metalloprotease 1727169..1727369 Alicycliphilus denitrificans BC 10103714 YP_004126311.1 CDS Alide_1668 NC_014910.1 1727369 1728274 D KEGG: ssn:SSON_1580 unknown prophage protein; hypothetical protein 1727369..1728274 Alicycliphilus denitrificans BC 10103715 YP_004126312.1 CDS Alide_1669 NC_014910.1 1728271 1729656 D PFAM: DnaB domain protein helicase domain protein; KEGG: bvi:Bcep1808_1163 DnaB domain-containing protein; DnaB domain-containing protein 1728271..1729656 Alicycliphilus denitrificans BC 10103716 YP_004126313.1 CDS Alide_1670 NC_014910.1 1729660 1730163 D KEGG: aav:Aave_1760 hypothetical protein; hypothetical protein 1729660..1730163 Alicycliphilus denitrificans BC 10103717 YP_004126314.1 CDS Alide_1671 NC_014910.1 1730167 1730361 D KEGG: sen:SACE_5054 mannitol dehydrogenase; hypothetical protein 1730167..1730361 Alicycliphilus denitrificans BC 10103718 YP_004126315.1 CDS Alide_1672 NC_014910.1 1730361 1730693 D PFAM: endodeoxyribonuclease RusA; KEGG: bav:BAV1307 phage endonuclease; endodeoxyribonuclease RusA 1730361..1730693 Alicycliphilus denitrificans BC 10103719 YP_004126316.1 CDS Alide_1673 NC_014910.1 1730686 1731207 D KEGG: bpt:Bpet0967 hypothetical protein; hypothetical protein 1730686..1731207 Alicycliphilus denitrificans BC 10103720 YP_004126317.1 CDS Alide_1674 NC_014910.1 1731204 1731704 D KEGG: aav:Aave_1763 hypothetical protein; hypothetical protein 1731204..1731704 Alicycliphilus denitrificans BC 10103721 YP_004126318.1 CDS Alide_1675 NC_014910.1 1731673 1732185 D KEGG: aav:Aave_1697 hypothetical protein; hypothetical protein 1731673..1732185 Alicycliphilus denitrificans BC 10103722 YP_004126319.1 CDS Alide_1676 NC_014910.1 1732241 1733017 D KEGG: aav:Aave_2352 hypothetical protein; hypothetical protein 1732241..1733017 Alicycliphilus denitrificans BC 10103723 YP_004126320.1 CDS Alide_1677 NC_014910.1 1733020 1734627 D KEGG: aav:Aave_2353 terminase large subunit protein; terminase large subunit protein 1733020..1734627 Alicycliphilus denitrificans BC 10103724 YP_004126321.1 CDS Alide_1678 NC_014910.1 1734634 1736901 D KEGG: aav:Aave_1700 phage associated protein; phage associated protein 1734634..1736901 Alicycliphilus denitrificans BC 10103725 YP_004126322.1 CDS Alide_1679 NC_014910.1 1737077 1738075 D KEGG: aav:Aave_1702 hypothetical protein; hypothetical protein 1737077..1738075 Alicycliphilus denitrificans BC 10103726 YP_004126323.1 CDS Alide_1680 NC_014910.1 1738144 1739433 D KEGG: ngk:NGK_0673 phage associated protein; phage associated protein 1738144..1739433 Alicycliphilus denitrificans BC 10103727 YP_004126324.1 CDS Alide_1681 NC_014910.1 1739505 1739981 D KEGG: aav:Aave_1704 phage associated protein; phage associated protein 1739505..1739981 Alicycliphilus denitrificans BC 10103728 YP_004126325.1 CDS Alide_1682 NC_014910.1 1740000 1740488 D KEGG: aav:Aave_1705 phage associated protein; hypothetical protein 1740000..1740488 Alicycliphilus denitrificans BC 10103729 YP_004126326.1 CDS Alide_1683 NC_014910.1 1740490 1741155 D KEGG: aav:Aave_1706 hypothetical protein; hypothetical protein 1740490..1741155 Alicycliphilus denitrificans BC 10103730 YP_004126327.1 CDS Alide_1684 NC_014910.1 1741165 1743267 D KEGG: aav:Aave_1716 hypothetical protein; hypothetical protein 1741165..1743267 Alicycliphilus denitrificans BC 10103731 YP_004126328.1 CDS Alide_1685 NC_014910.1 1743278 1744084 R KEGG: bpr:GBP346_A1728 hypothetical protein; hypothetical protein complement(1743278..1744084) Alicycliphilus denitrificans BC 10103732 YP_004126329.1 CDS Alide_1686 NC_014910.1 1744215 1745294 D KEGG: neu:NE1381 hypothetical protein; hypothetical protein 1744215..1745294 Alicycliphilus denitrificans BC 10103733 YP_004126330.1 CDS Alide_1687 NC_014910.1 1745291 1745614 D KEGG: hse:Hsero_1548 hypothetical protein; hypothetical protein 1745291..1745614 Alicycliphilus denitrificans BC 10103734 YP_004126331.1 CDS Alide_1688 NC_014910.1 1745632 1746114 D manually curated; KEGG: hse:Hsero_1549 hypothetical protein; hypothetical protein 1745632..1746114 Alicycliphilus denitrificans BC 10103735 YP_004126332.1 CDS Alide_1689 NC_014910.1 1746187 1746852 R KEGG: lpf:lpl0182 hypothetical protein; hypothetical protein complement(1746187..1746852) Alicycliphilus denitrificans BC 10103736 YP_004126333.1 CDS Alide_1690 NC_014910.1 1746806 1747702 R PFAM: SMF family protein; KEGG: amc:MADE_00299 smf protein; smf family protein complement(1746806..1747702) Alicycliphilus denitrificans BC 10103737 YP_004126334.1 CDS Alide_1691 NC_014910.1 1747850 1756453 D KEGG: ctt:CtCNB1_2656 hypothetical protein; hypothetical protein 1747850..1756453 Alicycliphilus denitrificans BC 10103738 YP_004126335.1 CDS Alide_1692 NC_014910.1 1756529 1756930 D KEGG: rer:RER_25240 hypothetical protein; hypothetical protein 1756529..1756930 Alicycliphilus denitrificans BC 10103739 YP_004126336.1 CDS Alide_1693 NC_014910.1 1756940 1758016 D KEGG: pag:PLES_13611 hypothetical protein; hypothetical protein 1756940..1758016 Alicycliphilus denitrificans BC 10103740 YP_004126337.1 CDS Alide_1694 NC_014910.1 1758026 1758706 D KEGG: olu:OSTLU_23918 predicted protein; hypothetical protein 1758026..1758706 Alicycliphilus denitrificans BC 10103741 YP_004126338.1 CDS Alide_1695 NC_014910.1 1758700 1759866 D KEGG: aav:Aave_1709 hypothetical protein; hypothetical protein 1758700..1759866 Alicycliphilus denitrificans BC 10103742 YP_004126339.1 CDS Alide_1696 NC_014910.1 1759863 1762352 D KEGG: gym:GYMC10_1290 transcriptional regulator, AraC family; hypothetical protein 1759863..1762352 Alicycliphilus denitrificans BC 10103743 YP_004126340.1 CDS Alide_1697 NC_014910.1 1762352 1762783 D KEGG: sml:Smlt1972; hypothetical protein 1762352..1762783 Alicycliphilus denitrificans BC 10103744 YP_004126341.1 CDS Alide_1698 NC_014910.1 1762786 1764591 D KEGG: aav:Aave_1715 hypothetical protein; hypothetical protein 1762786..1764591 Alicycliphilus denitrificans BC 10103745 YP_004126342.1 CDS Alide_1699 NC_014910.1 1764649 1765068 D KEGG: aav:Aave_1722 hypothetical protein; hypothetical protein 1764649..1765068 Alicycliphilus denitrificans BC 10103746 YP_004126343.1 CDS Alide_1700 NC_014910.1 1765065 1765601 D KEGG: aav:Aave_1723 hypothetical protein; hypothetical protein 1765065..1765601 Alicycliphilus denitrificans BC 10103747 YP_004126344.1 CDS Alide_1701 NC_014910.1 1765605 1766123 D KEGG: aav:Aave_1724 hypothetical protein; hypothetical protein 1765605..1766123 Alicycliphilus denitrificans BC 10103748 YP_004126345.1 CDS Alide_1702 NC_014910.1 1766135 1767376 D KEGG: ent:Ent638_0148 hypothetical protein; hypothetical protein 1766135..1767376 Alicycliphilus denitrificans BC 10103749 YP_004126346.1 CDS Alide_1703 NC_014910.1 1767437 1767742 D KEGG: aav:Aave_1728 hypothetical protein; hypothetical protein 1767437..1767742 Alicycliphilus denitrificans BC 10103750 YP_004126347.1 CDS Alide_1704 NC_014910.1 1767739 1768323 D KEGG: bbr:BB3482 phage lysozyme; phage lysozyme 1767739..1768323 Alicycliphilus denitrificans BC 10103751 YP_004126348.1 CDS Alide_1705 NC_014910.1 1768320 1768583 D KEGG: pha:PSHAa0938 hypothetical protein; hypothetical protein 1768320..1768583 Alicycliphilus denitrificans BC 10103752 YP_004126349.1 CDS Alide_1706 NC_014910.1 1768624 1769091 D manually curated; KEGG: aav:Aave_2360 hypothetical protein; hypothetical protein 1768624..1769091 Alicycliphilus denitrificans BC 10103753 YP_004126350.1 CDS Alide_1707 NC_014910.1 1769104 1769496 R PFAM: Uncharacterised protein family UPF0150; KEGG: bpa:BPP2077 hypothetical protein; hypothetical protein complement(1769104..1769496) Alicycliphilus denitrificans BC 10103754 YP_004126351.1 CDS Alide_1708 NC_014910.1 1769524 1769706 R PFAM: YcfA family protein; KEGG: bpa:BPP2078 hypothetical protein; hypothetical protein complement(1769524..1769706) Alicycliphilus denitrificans BC 10103755 YP_004126352.1 CDS Alide_1709 NC_014910.1 1769798 1770088 D KEGG: dac:Daci_1655 hypothetical protein; hypothetical protein 1769798..1770088 Alicycliphilus denitrificans BC 10103756 YP_004126353.1 CDS Alide_1710 NC_014910.1 1770085 1770345 D KEGG: dac:Daci_1656 hypothetical protein; hypothetical protein 1770085..1770345 Alicycliphilus denitrificans BC 10103757 YP_004126354.1 CDS Alide_1711 NC_014910.1 1771237 1771473 R KEGG: vei:Veis_5041 hypothetical protein; hypothetical protein complement(1771237..1771473) Alicycliphilus denitrificans BC 10103758 YP_004126355.1 CDS Alide_1712 NC_014910.1 1771476 1771712 R KEGG: saq:Sare_4718 pantoate--beta-alanine ligase; hypothetical protein complement(1771476..1771712) Alicycliphilus denitrificans BC 10103759 YP_004126356.1 CDS Alide_1715 NC_014910.1 1774166 1775152 D PFAM: transposase IS4 family protein; KEGG: ajs:Ajs_3395 transposase, IS4 family protein; transposase is4 family protein 1774166..1775152 Alicycliphilus denitrificans BC 10103762 YP_004126357.1 CDS Alide_1717 NC_014910.1 1775921 1776865 D KEGG: mea:Mex_2p0814 hypothetical protein; hypothetical protein 1775921..1776865 Alicycliphilus denitrificans BC 10103764 YP_004126358.1 CDS Alide_1718 NC_014910.1 1777672 1778493 R KEGG: mpt:Mpe_A2996 transposase; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; istb domain-containing protein ATP-binding protein complement(1777672..1778493) Alicycliphilus denitrificans BC 10103765 YP_004126359.1 CDS Alide_1719 NC_014910.1 1778490 1780001 R PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_6160 integrase catalytic subunit; integrase catalytic region protein complement(1778490..1780001) Alicycliphilus denitrificans BC 10103766 YP_004126360.1 CDS Alide_1720 NC_014910.1 1780095 1781576 R KEGG: mms:mma_3457 hypothetical protein; hypothetical protein complement(1780095..1781576) Alicycliphilus denitrificans BC 10103767 YP_004126361.1 CDS Alide_1721 NC_014910.1 1781573 1782496 R KEGG: lch:Lcho_3476 hypothetical protein; hypothetical protein complement(1781573..1782496) Alicycliphilus denitrificans BC 10103768 YP_004126362.1 CDS Alide_1722 NC_014910.1 1782579 1782818 R manually curated; KEGG: ajs:Ajs_3336 hypothetical protein; hypothetical protein complement(1782579..1782818) Alicycliphilus denitrificans BC 10103769 YP_004126363.1 CDS Alide_1723 NC_014910.1 1782983 1783840 R KEGG: lch:Lcho_3471 hypothetical protein; hypothetical protein complement(1782983..1783840) Alicycliphilus denitrificans BC 10103770 YP_004126364.1 CDS Alide_1724 NC_014910.1 1784162 1785499 R KEGG: ajs:Ajs_3340 phage integrase family protein; manually curated; PFAM: integrase family protein; integrase family protein complement(1784162..1785499) Alicycliphilus denitrificans BC 10103771 YP_004126365.1 CDS Alide_1725 NC_014910.1 1785915 1786970 D KEGG: aav:Aave_2648 signal peptide protein; abc-type nitrate/sulfonate/bicarbonate transporter periplasmic ligand binding subunit 1785915..1786970 Alicycliphilus denitrificans BC 10103772 YP_004126366.1 CDS Alide_1726 NC_014910.1 1787069 1787221 D KEGG: dia:Dtpsy_1977 hypothetical protein; hypothetical protein 1787069..1787221 Alicycliphilus denitrificans BC 10103773 YP_004126367.1 CDS Alide_1727 NC_014910.1 1787239 1788753 R PFAM: Lytic transglycosylase catalytic; MLTD_N domain protein; Peptidoglycan-binding lysin domain; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic; lytic transglycosylase complement(1787239..1788753) Alicycliphilus denitrificans BC 10103774 YP_004126368.1 CDS Alide_1728 NC_014910.1 1788750 1789520 R TIGRFAM: hydroxyacylglutathione hydrolase; KEGG: dia:Dtpsy_1975 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase complement(1788750..1789520) Alicycliphilus denitrificans BC 10103775 YP_004126369.1 CDS Alide_1729 NC_014910.1 1789525 1790307 D PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_1744 methyltransferase type 11; type 11 methyltransferase 1789525..1790307 Alicycliphilus denitrificans BC 10103776 YP_004126370.1 CDS Alide_1730 NC_014910.1 1790353 1790799 D PFAM: ribonuclease H; KEGG: dia:Dtpsy_1973 ribonuclease H; ribonuclease h 1790353..1790799 Alicycliphilus denitrificans BC 10103777 YP_004126371.1 CDS Alide_1731 NC_014910.1 1790902 1792119 R PFAM: aminotransferase class I and II; KEGG: rso:RSp1232 aspartate aminotransferase A protein; aminotransferase class i and ii complement(1790902..1792119) Alicycliphilus denitrificans BC 10103778 YP_004126372.1 CDS Alide_1732 NC_014910.1 1792116 1792748 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2989 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase complement(1792116..1792748) Alicycliphilus denitrificans BC 10103779 YP_004126373.1 CDS Alide_1733 NC_014910.1 1792754 1793428 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2990 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase complement(1792754..1793428) Alicycliphilus denitrificans BC 10103780 YP_004126374.1 CDS Alide_1734 NC_014910.1 1793567 1794493 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS03179 transcription regulator protein; LysR family transcriptional regulator 1793567..1794493 Alicycliphilus denitrificans BC 10103781 YP_004126375.1 CDS Alide_1735 NC_014910.1 1794647 1795549 D KEGG: aav:Aave_4073 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 1794647..1795549 Alicycliphilus denitrificans BC 10103782 YP_004126376.1 CDS Alide_1736 NC_014910.1 1795585 1796262 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsl:RPSI07_mp1263 dimethylmenaquinone methyltransferase; protein; dimethylmenaquinone methyltransferase 1795585..1796262 Alicycliphilus denitrificans BC 10103783 YP_004126377.1 CDS Alide_1737 NC_014910.1 1796342 1797319 D KEGG: mms:mma_2446 tricarboxylate binding receptor; tricarboxylate binding receptor 1796342..1797319 Alicycliphilus denitrificans BC 10103784 YP_004126378.1 CDS Alide_1738 NC_014910.1 1797306 1797701 R KEGG: dac:Daci_4475 hypothetical protein; hypothetical protein complement(1797306..1797701) Alicycliphilus denitrificans BC 10103785 YP_004126379.1 CDS Alide_1739 NC_014910.1 1797698 1798024 R PFAM: Thioredoxin domain-containing protein; KEGG: dia:Dtpsy_1972 thioredoxin domain protein; thioredoxin domain-containing protein complement(1797698..1798024) Alicycliphilus denitrificans BC 10103786 YP_004126380.1 CDS Alide_1740 NC_014910.1 1798026 1799384 R KEGG: dia:Dtpsy_1971 molybdenum cofactor synthesis domain protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdenum cofactor synthesis domain-containing protein complement(1798026..1799384) Alicycliphilus denitrificans BC 10103787 YP_004126381.1 CDS Alide_1741 NC_014910.1 1799371 1799946 R PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_2657 GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase complement(1799371..1799946) Alicycliphilus denitrificans BC 10103788 YP_004126382.1 CDS Alide_1742 NC_014910.1 1799943 1800575 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: dia:Dtpsy_1970 molybdopterin-guanine dinucleotide biosynthesis protein MobA; molybdopterin-guanine dinucleotide biosynthesis protein a complement(1799943..1800575) Alicycliphilus denitrificans BC 10103789 YP_004126383.1 CDS Alide_1743 NC_014910.1 1800579 1801748 R TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; KEGG: dia:Dtpsy_1969 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein a complement(1800579..1801748) Alicycliphilus denitrificans BC 10103790 YP_004126384.1 CDS Alide_1744 NC_014910.1 1801840 1802718 D KEGG: ajs:Ajs_1750 hypothetical protein; hypothetical protein 1801840..1802718 Alicycliphilus denitrificans BC 10103791 YP_004126385.1 CDS Alide_1745 NC_014910.1 1802777 1803334 R KEGG: ajs:Ajs_1755 hypothetical protein; hypothetical protein complement(1802777..1803334) Alicycliphilus denitrificans BC 10103792 YP_004126386.1 CDS Alide_1746 NC_014910.1 1803344 1804777 R PFAM: Aldehyde Dehydrogenase; KEGG: dia:Dtpsy_1966 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1803344..1804777) Alicycliphilus denitrificans BC 10103793 YP_004126387.1 CDS Alide_1747 NC_014910.1 1804942 1807023 R TIGRFAM: V-type H(+)-translocating pyrophosphatase; KEGG: dia:Dtpsy_1965 membrane-bound proton-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase; v-type h(+)-translocating pyrophosphatase complement(1804942..1807023) Alicycliphilus denitrificans BC 10103794 YP_004126388.1 CDS Alide_1748 NC_014910.1 1807238 1807771 D KEGG: dia:Dtpsy_1964 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase; inorganic diphosphatase 1807238..1807771 Alicycliphilus denitrificans BC 10103795 YP_004126389.1 CDS Alide_1749 NC_014910.1 1807973 1808479 D KEGG: ajs:Ajs_1759 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; chemotaxis protein CheW 1807973..1808479 Alicycliphilus denitrificans BC 10103796 YP_004126390.1 CDS Alide_1750 NC_014910.1 1808492 1810249 D KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 1808492..1810249 Alicycliphilus denitrificans BC 10103797 YP_004126391.1 CDS Alide_1751 NC_014910.1 1810246 1811469 R PFAM: protein of unknown function DUF482; KEGG: vei:Veis_1736 hypothetical protein; hypothetical protein complement(1810246..1811469) Alicycliphilus denitrificans BC 10103798 YP_004126392.1 CDS Alide_1753 NC_014910.1 1811765 1813423 D KEGG: vei:Veis_1737 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 1811765..1813423 Alicycliphilus denitrificans BC 10103800 YP_004126393.1 CDS Alide_1754 NC_014910.1 1813474 1813812 D PFAM: nitrogen regulatory protein P-II; KEGG: dia:Dtpsy_1960 nitrogen regulatory protein P-II; nitrogen regulatory protein p-ii 1813474..1813812 Alicycliphilus denitrificans BC 10103801 YP_004126394.1 CDS Alide_1755 NC_014910.1 1813822 1814415 R PFAM: Conserved hypothetical protein CHP00730; KEGG: dia:Dtpsy_1959 hypothetical protein; hypothetical protein complement(1813822..1814415) Alicycliphilus denitrificans BC 10103802 YP_004126395.1 CDS Alide_1756 NC_014910.1 1814408 1814806 R PFAM: diacylglycerol kinase; KEGG: dia:Dtpsy_1958 diacylglycerol kinase; diacylglycerol kinase complement(1814408..1814806) Alicycliphilus denitrificans BC 10103803 YP_004126396.1 CDS Alide_1757 NC_014910.1 1814869 1815441 R PFAM: RDD domain containing protein; KEGG: ajs:Ajs_1765 RDD domain-containing protein; rdd domain-containing protein complement(1814869..1815441) Alicycliphilus denitrificans BC 10103804 YP_004126397.1 CDS Alide_1758 NC_014910.1 1815469 1816293 R KEGG: ajs:Ajs_1766 transmembrane protein; transmembrane protein complement(1815469..1816293) Alicycliphilus denitrificans BC 10103805 YP_004126398.1 CDS Alide_1759 NC_014910.1 1816317 1816778 R KEGG: dia:Dtpsy_1955 transmembrane protein; transmembrane protein complement(1816317..1816778) Alicycliphilus denitrificans BC 10103806 YP_004126399.1 CDS Alide_1760 NC_014910.1 1816775 1817344 R KEGG: dia:Dtpsy_1954 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 family RNA polymerase sigma factor complement(1816775..1817344) Alicycliphilus denitrificans BC 10103807 YP_004126400.1 CDS Alide_1761 NC_014910.1 1817633 1819426 D KEGG: ajs:Ajs_1769 acetolactate synthase 3 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; acetolactate synthase large subunit 1817633..1819426 Alicycliphilus denitrificans BC 10103808 YP_004126401.1 CDS Alide_1762 NC_014910.1 1819614 1820105 D KEGG: ctt:CtCNB1_1659 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; acetolactate synthase small subunit 1819614..1820105 Alicycliphilus denitrificans BC 10103809 YP_004126402.1 CDS Alide_1763 NC_014910.1 1820174 1821190 D TIGRFAM: ketol-acid reductoisomerase; KEGG: dia:Dtpsy_1951 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase 1820174..1821190 Alicycliphilus denitrificans BC 10103810 YP_004126403.1 CDS Alide_1764 NC_014910.1 1821368 1822204 D KEGG: vei:Veis_1753 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; cdp-diacylglycerol/serine o-phosphatidyltransferase 1821368..1822204 Alicycliphilus denitrificans BC 10103811 YP_004126404.1 CDS Alide_1765 NC_014910.1 1822229 1822897 R KEGG: tmz:Tmz1t_0854 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; maleylacetoacetate isomerase complement(1822229..1822897) Alicycliphilus denitrificans BC 10103812 YP_004126405.1 CDS Alide_1766 NC_014910.1 1822908 1823921 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: tmz:Tmz1t_0853 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (faa) hydrolase complement(1822908..1823921) Alicycliphilus denitrificans BC 10103813 YP_004126406.1 CDS Alide_1767 NC_014910.1 1823997 1825370 R PFAM: major facilitator superfamily MFS_1; KEGG: hse:Hsero_1116 4-hydroxybenzoate transporter transmembrane protein; major facilitator superfamily protein complement(1823997..1825370) Alicycliphilus denitrificans BC 10103814 YP_004126407.1 CDS Alide_1768 NC_014910.1 1825399 1825953 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3679 glyoxalase-family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(1825399..1825953) Alicycliphilus denitrificans BC 10103815 YP_004126408.1 CDS Alide_1769 NC_014910.1 1826086 1826994 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_3346 LysR family transcriptional regulator; LysR family transcriptional regulator 1826086..1826994 Alicycliphilus denitrificans BC 10103816 YP_004126409.1 CDS Alide_1770 NC_014910.1 1827202 1828869 D TIGRFAM: 2-isopropylmalate synthase; KEGG: dia:Dtpsy_1949 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; 2-isopropylmalate synthase 1827202..1828869 Alicycliphilus denitrificans BC 10103817 YP_004126410.1 CDS Alide_1771 NC_014910.1 1828905 1830446 D KEGG: ajs:Ajs_1774 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; 2-isopropylmalate synthase 1828905..1830446 Alicycliphilus denitrificans BC 10103818 YP_004126411.1 CDS Alide_1772 NC_014910.1 1830562 1831656 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ajs:Ajs_1775 murein-dd-endopeptidase; peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 1830562..1831656 Alicycliphilus denitrificans BC 10103819 YP_004126412.1 CDS Alide_1773 NC_014910.1 1831694 1832506 R KEGG: dia:Dtpsy_1946 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; transcriptional regulator iclr complement(1831694..1832506) Alicycliphilus denitrificans BC 10103820 YP_004126413.1 CDS Alide_1774 NC_014910.1 1832590 1834092 R KEGG: dac:Daci_5942 sodium/proline symporter; TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; sodium/proline symporter complement(1832590..1834092) Alicycliphilus denitrificans BC 10103821 YP_004126414.1 CDS Alide_1775 NC_014910.1 1834295 1838290 R KEGG: dac:Daci_5941 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase complement(1834295..1838290) Alicycliphilus denitrificans BC 10103822 YP_004126415.1 CDS Alide_1776 NC_014910.1 1838436 1839677 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_1945 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(1838436..1839677) Alicycliphilus denitrificans BC 10103823 YP_004126416.1 CDS Alide_1777 NC_014910.1 1839693 1840784 R PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_1778 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(1839693..1840784) Alicycliphilus denitrificans BC 10103824 YP_004126417.1 CDS Alide_1778 NC_014910.1 1840841 1841560 R KEGG: ajs:Ajs_1779 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein complement(1840841..1841560) Alicycliphilus denitrificans BC 10103825 YP_004126418.1 CDS Alide_1779 NC_014910.1 1841750 1842529 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_1942 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase complement(1841750..1842529) Alicycliphilus denitrificans BC 10103826 YP_004126419.1 CDS Alide_1780 NC_014910.1 1842540 1844060 R PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_1941 3-hydroxy-acyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase complement(1842540..1844060) Alicycliphilus denitrificans BC 10103827 YP_004126420.1 CDS Alide_1781 NC_014910.1 1844138 1846156 D KEGG: dia:Dtpsy_1940 hypothetical protein; hypothetical protein 1844138..1846156 Alicycliphilus denitrificans BC 10103828 YP_004126421.1 CDS Alide_1782 NC_014910.1 1846167 1847069 R KEGG: dia:Dtpsy_1939 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate diphosphorylase complement(1846167..1847069) Alicycliphilus denitrificans BC 10103829 YP_004126422.1 CDS Alide_1783 NC_014910.1 1847070 1847873 R PFAM: thiazole biosynthesis family protein; KEGG: dia:Dtpsy_1938 thiazole synthase; thiazole biosynthesis family protein complement(1847070..1847873) Alicycliphilus denitrificans BC 10103830 YP_004126423.1 CDS Alide_1784 NC_014910.1 1847889 1848086 R KEGG: dia:Dtpsy_1937 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein this complement(1847889..1848086) Alicycliphilus denitrificans BC 10103831 YP_004126424.1 CDS Alide_1785 NC_014910.1 1848083 1849201 R KEGG: dia:Dtpsy_1936 FAD dependent oxidoreductase; TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; glycine oxidase thio complement(1848083..1849201) Alicycliphilus denitrificans BC 10103832 YP_004126425.1 CDS Alide_1786 NC_014910.1 1849396 1850244 D KEGG: ajs:Ajs_1787 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1849396..1850244 Alicycliphilus denitrificans BC 10103833 YP_004126426.1 CDS Alide_1787 NC_014910.1 1850255 1850731 R KEGG: dia:Dtpsy_1934 SH3 type 3 domain protein; PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; sh3 type 3 domain-containing protein complement(1850255..1850731) Alicycliphilus denitrificans BC 10103834 YP_004126427.1 CDS Alide_1788 NC_014910.1 1850818 1852089 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: ctt:CtCNB1_2972 cytosine/purines/uracil permease; cytosine/purines uracil thiamine allantoin permease complement(1850818..1852089) Alicycliphilus denitrificans BC 10103835 YP_004126428.1 CDS Alide_1789 NC_014910.1 1852086 1853132 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dia:Dtpsy_1933 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fad-dependent pyridine nucleotide-disulfide oxidoreductase complement(1852086..1853132) Alicycliphilus denitrificans BC 10103836 YP_004126429.1 CDS Alide_1790 NC_014910.1 1853147 1853470 R KEGG: dia:Dtpsy_1932 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1853147..1853470) Alicycliphilus denitrificans BC 10103837 YP_004126430.1 CDS Alide_1791 NC_014910.1 1853598 1854965 R TIGRFAM: sulfate adenylyltransferase, large subunit; KEGG: dia:Dtpsy_1931 sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; sulfate adenylyltransferase, large subunit complement(1853598..1854965) Alicycliphilus denitrificans BC 10103838 YP_004126431.1 CDS Alide_1792 NC_014910.1 1854965 1855921 R KEGG: aav:Aave_3055 sulfate adenylyltransferase subunit 2; PFAM: phosphoadenosine phosphosulfate reductase; sulfate adenylyltransferase complement(1854965..1855921) Alicycliphilus denitrificans BC 10103839 YP_004126432.1 CDS Alide_1793 NC_014910.1 1855987 1856610 R KEGG: ajs:Ajs_1793 phosphoadenylylsulfate reductase (thioredoxin); PFAM: phosphoadenosine phosphosulfate reductase; phosphoadenylyl-sulfate reductase (thioredoxin) complement(1855987..1856610) Alicycliphilus denitrificans BC 10103840 YP_004126433.1 CDS Alide_1794 NC_014910.1 1856607 1857002 R PFAM: Uncharacterised conserved protein UCP030820; KEGG: dia:Dtpsy_1928 hypothetical protein; hypothetical protein complement(1856607..1857002) Alicycliphilus denitrificans BC 10103841 YP_004126434.1 CDS Alide_1795 NC_014910.1 1857032 1858819 R PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: dia:Dtpsy_1927 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulfite reductase 4Fe-4S subunit complement(1857032..1858819) Alicycliphilus denitrificans BC 10103842 YP_004126435.1 CDS Alide_1796 NC_014910.1 1858846 1859649 R PFAM: protein of unknown function DUF81; KEGG: aav:Aave_3052 hypothetical protein; hypothetical protein complement(1858846..1859649) Alicycliphilus denitrificans BC 10103843 YP_004126436.1 CDS Alide_1797 NC_014910.1 1859759 1861642 R KEGG: dac:Daci_4644 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; tRNA u-34 5-methylaminomethyl-2-thiouridine biosynthesis protein mnmc complement(1859759..1861642) Alicycliphilus denitrificans BC 10103844 YP_004126437.1 CDS Alide_1798 NC_014910.1 1861639 1862304 R PFAM: Uncharacterised protein family UPF0126; KEGG: dia:Dtpsy_1925 protein of unknown function UPF0126; hypothetical protein complement(1861639..1862304) Alicycliphilus denitrificans BC 10103845 YP_004126438.1 CDS Alide_1799 NC_014910.1 1862376 1862648 R PFAM: Fe(II) trafficking protein YggX; KEGG: ctt:CtCNB1_3078 Fe(II) trafficking protein YggX; fe(ii) trafficking protein yggx complement(1862376..1862648) Alicycliphilus denitrificans BC 10103846 YP_004126439.1 CDS Alide_1800 NC_014910.1 1862773 1863792 D KEGG: ajs:Ajs_1799 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; sulfate ABC transporter periplasmic sulfate-binding protein 1862773..1863792 Alicycliphilus denitrificans BC 10103847 YP_004126440.1 CDS Alide_1801 NC_014910.1 1863858 1864178 D KEGG: rfr:Rfer_1780 NADPH-dependent FMN reductase; hypothetical protein 1863858..1864178 Alicycliphilus denitrificans BC 10103848 YP_004126441.1 CDS Alide_1802 NC_014910.1 1864175 1864870 R KEGG: rme:Rmet_3794 TetR family transcriptional regulator; tetr family transcriptional regulator complement(1864175..1864870) Alicycliphilus denitrificans BC 10103849 YP_004126442.1 CDS Alide_1803 NC_014910.1 1864935 1865072 D hypothetical protein 1864935..1865072 Alicycliphilus denitrificans BC 10103850 YP_004126443.1 CDS Alide_1804 NC_014910.1 1865089 1866654 D PFAM: AMP-dependent synthetase and ligase; KEGG: azl:AZL_a10790 long-chain fatty-acid-CoA ligase; AMP-dependent synthetase/ligase 1865089..1866654 Alicycliphilus denitrificans BC 10103851 YP_004126444.1 CDS Alide_1805 NC_014910.1 1866710 1867897 D KEGG: bxe:Bxe_B2740 lipid-transfer protein; PFAM: Thiolase-like; propanoyl-CoA c-acyltransferase 1866710..1867897 Alicycliphilus denitrificans BC 10103852 YP_004126445.1 CDS Alide_1806 NC_014910.1 1867909 1868718 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_4328 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 1867909..1868718 Alicycliphilus denitrificans BC 10103853 YP_004126446.1 CDS Alide_1807 NC_014910.1 1868756 1869952 D PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_C0498 branched chain amino acid ABC transporter periplasmic ligand-binding protein; ABC transporter substrate-binding protein 1868756..1869952 Alicycliphilus denitrificans BC 10103854 YP_004126447.1 CDS Alide_1808 NC_014910.1 1870021 1870878 D PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0499 branched chain amino acid ABC transporter inner membrane protein; inner-membrane translocator 1870021..1870878 Alicycliphilus denitrificans BC 10103855 YP_004126448.1 CDS Alide_1809 NC_014910.1 1870875 1871843 D PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0500 branched chain amino acid ABC transporter inner membrane protein; inner-membrane translocator 1870875..1871843 Alicycliphilus denitrificans BC 10103856 YP_004126449.1 CDS Alide_1810 NC_014910.1 1871840 1872592 D KEGG: bxe:Bxe_C0501 branched chain amino acid ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1871840..1872592 Alicycliphilus denitrificans BC 10103857 YP_004126450.1 CDS Alide_1811 NC_014910.1 1872589 1873296 D KEGG: bxe:Bxe_C0502 branched chain amino acid ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1872589..1873296 Alicycliphilus denitrificans BC 10103858 YP_004126451.1 CDS Alide_1812 NC_014910.1 1873340 1873933 D PFAM: Carboxymuconolactone decarboxylase; KEGG: pat:Patl_3926 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 1873340..1873933 Alicycliphilus denitrificans BC 10103859 YP_004126452.1 CDS Alide_1813 NC_014910.1 1873970 1875571 D PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_1300 DitJ-like CoA ligase; AMP-dependent synthetase/ligase 1873970..1875571 Alicycliphilus denitrificans BC 10103860 YP_004126453.1 CDS Alide_1814 NC_014910.1 1875587 1876420 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1711 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 1875587..1876420 Alicycliphilus denitrificans BC 10103861 YP_004126454.1 CDS Alide_1819 NC_014910.1 1880081 1881058 R PFAM: Lytic transglycosylase catalytic; Sel1 domain protein repeat-containing protein; KEGG: rfr:Rfer_0483 lytic transglycosylase, catalytic; lytic transglycosylase complement(1880081..1881058) Alicycliphilus denitrificans BC 10103866 YP_004126455.1 CDS Alide_1820 NC_014910.1 1881411 1882130 D KEGG: ecc:c1165 P4 family integrase; p4 family integrase 1881411..1882130 Alicycliphilus denitrificans BC 10103867 YP_004126456.1 CDS Alide_1821 NC_014910.1 1882161 1882484 D PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1882161..1882484 Alicycliphilus denitrificans BC 10103868 YP_004126457.1 CDS Alide_1822 NC_014910.1 1882481 1883395 D PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 1882481..1883395 Alicycliphilus denitrificans BC 10103869 YP_004126458.1 CDS Alide_1823 NC_014910.1 1883501 1883893 D KEGG: ajs:Ajs_2230 hypothetical protein; hypothetical protein 1883501..1883893 Alicycliphilus denitrificans BC 10103870 YP_004126459.1 CDS Alide_1824 NC_014910.1 1884144 1884860 D KEGG: ajs:Ajs_2229 hypothetical protein; hypothetical protein 1884144..1884860 Alicycliphilus denitrificans BC 10103871 YP_004126460.1 CDS Alide_1825 NC_014910.1 1885152 1885949 D KEGG: rpf:Rpic12D_0659 hypothetical protein; hypothetical protein 1885152..1885949 Alicycliphilus denitrificans BC 10103872 YP_004126461.1 CDS Alide_1826 NC_014910.1 1886172 1887860 R KEGG: ajs:Ajs_1298 mercuric reductase; TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; mercuric reductase complement(1886172..1887860) Alicycliphilus denitrificans BC 10103873 YP_004126462.1 CDS Alide_1827 NC_014910.1 1887871 1888149 R KEGG: ajs:Ajs_1299 mercuric transport protein periplasmic component; TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport periplasmic protein complement(1887871..1888149) Alicycliphilus denitrificans BC 10103874 YP_004126463.1 CDS Alide_1828 NC_014910.1 1888160 1888510 R PFAM: Mercuric transport protein MerT; KEGG: ajs:Ajs_1300 mercuric transport protein; mercuric transport protein mert complement(1888160..1888510) Alicycliphilus denitrificans BC 10103875 YP_004126464.1 CDS Alide_1829 NC_014910.1 1888582 1888989 D TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: ajs:Ajs_1301 MerR family transcriptional regulator; SMART: regulatory protein MerR; hg(ii)-responsive transcriptional regulator 1888582..1888989 Alicycliphilus denitrificans BC 10103876 YP_004126465.1 CDS Alide_1830 NC_014910.1 1889304 1889855 D KEGG: mpt:Mpe_A2362 hypothetical protein; hypothetical protein 1889304..1889855 Alicycliphilus denitrificans BC 10103877 YP_004126466.1 CDS Alide_1831 NC_014910.1 1889911 1890522 D KEGG: mpt:Mpe_A2363 hypothetical protein; hypothetical protein 1889911..1890522 Alicycliphilus denitrificans BC 10103878 YP_004126467.1 CDS Alide_1832 NC_014910.1 1890612 1890977 D KEGG: mpt:Mpe_A2364 hypothetical protein; hypothetical protein 1890612..1890977 Alicycliphilus denitrificans BC 10103879 YP_004126468.1 CDS Alide_1833 NC_014910.1 1891062 1891712 D KEGG: tmz:Tmz1t_0975 hypothetical protein; hypothetical protein 1891062..1891712 Alicycliphilus denitrificans BC 10103880 YP_004126469.1 CDS Alide_1834 NC_014910.1 1891777 1892886 D KEGG: tmz:Tmz1t_0974 hypothetical protein; hypothetical protein 1891777..1892886 Alicycliphilus denitrificans BC 10103881 YP_004126470.1 CDS Alide_1835 NC_014910.1 1892988 1893293 D KEGG: mpt:Mpe_A2367 hypothetical protein; hypothetical protein 1892988..1893293 Alicycliphilus denitrificans BC 10103882 YP_004126471.1 CDS Alide_1836 NC_014910.1 1893393 1894577 D KEGG: ajs:Ajs_2220 helicase domain-containing protein; helicase 1893393..1894577 Alicycliphilus denitrificans BC 10103883 YP_004126472.1 CDS Alide_1837 NC_014910.1 1894569 1895483 R PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein complement(1894569..1895483) Alicycliphilus denitrificans BC 10103884 YP_004126473.1 CDS Alide_1838 NC_014910.1 1895480 1895803 R PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein complement(1895480..1895803) Alicycliphilus denitrificans BC 10103885 YP_004126474.1 CDS Alide_1840 NC_014910.1 1896262 1898115 R PFAM: integrase family protein; KEGG: mpt:Mpe_A2408 integrase (int); integrase family protein complement(1896262..1898115) Alicycliphilus denitrificans BC 10103887 YP_004126475.1 CDS Alide_1841 NC_014910.1 1898544 1899086 R KEGG: ajs:Ajs_1664 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; rrf2 family transcriptional regulator complement(1898544..1899086) Alicycliphilus denitrificans BC 10103889 YP_004126476.1 CDS Alide_1842 NC_014910.1 1899248 1899631 R manually curated; KEGG: dia:Dtpsy_2039 hypothetical protein; hypothetical protein complement(1899248..1899631) Alicycliphilus denitrificans BC 10103890 YP_004126477.1 CDS Alide_1843 NC_014910.1 1899705 1899965 D KEGG: dia:Dtpsy_2037 hypothetical protein; hypothetical protein 1899705..1899965 Alicycliphilus denitrificans BC 10103891 YP_004126478.1 CDS Alide_1844 NC_014910.1 1899977 1900852 R KEGG: dia:Dtpsy_2036 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase complement(1899977..1900852) Alicycliphilus denitrificans BC 10103892 YP_004126479.1 CDS Alide_1845 NC_014910.1 1901079 1902230 D manually curated; PFAM: CBS domain containing protein; HPP family protein; KEGG: ajs:Ajs_1669 CBS domain-containing protein; SMART: CBS domain containing protein; CBS domain-containing protein 1901079..1902230 Alicycliphilus denitrificans BC 10103893 YP_004126480.1 CDS Alide_1846 NC_014910.1 1902478 1902738 D KEGG: dia:Dtpsy_2034 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor if-1 1902478..1902738 Alicycliphilus denitrificans BC 10103894 YP_004126481.1 CDS Alide_1847 NC_014910.1 1903109 1904158 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ajs:Ajs_4119 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1903109..1904158 Alicycliphilus denitrificans BC 10103896 YP_004126482.1 CDS Alide_1848 NC_014910.1 1904164 1904937 D PFAM: protein of unknown function DUF1624; KEGG: ajs:Ajs_1672 hypothetical protein; hypothetical protein 1904164..1904937 Alicycliphilus denitrificans BC 10103897 YP_004126483.1 CDS Alide_1849 NC_014910.1 1904949 1905251 R TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: dia:Dtpsy_1390 integration host factor, beta subunit; SMART: histone family protein DNA-binding protein; integration host factor subunit beta complement(1904949..1905251) Alicycliphilus denitrificans BC 10103898 YP_004126484.1 CDS Alide_1850 NC_014910.1 1905372 1907057 R KEGG: dia:Dtpsy_1391 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; 30S ribosomal protein S1 complement(1905372..1907057) Alicycliphilus denitrificans BC 10103899 YP_004126485.1 CDS Alide_1851 NC_014910.1 1907238 1909262 R TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; cytidylate kinase; KEGG: dia:Dtpsy_1392 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); cytidylate kinase region; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1907238..1909262) Alicycliphilus denitrificans BC 10103900 YP_004126486.1 CDS Alide_1852 NC_014910.1 1909262 1910146 R KEGG: dia:Dtpsy_1393 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; prephenate dehydrogenase complement(1909262..1910146) Alicycliphilus denitrificans BC 10103901 YP_004126487.1 CDS Alide_1853 NC_014910.1 1910157 1911257 R KEGG: dia:Dtpsy_1394 chorismate mutase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; chorismate mutase complement(1910157..1911257) Alicycliphilus denitrificans BC 10103902 YP_004126488.1 CDS Alide_1854 NC_014910.1 1911376 1912485 R TIGRFAM: phosphoserine aminotransferase; KEGG: dia:Dtpsy_1395 phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase complement(1911376..1912485) Alicycliphilus denitrificans BC 10103903 YP_004126489.1 CDS Alide_1855 NC_014910.1 1912552 1915242 R SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: ajs:Ajs_2464 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase, a subunit complement(1912552..1915242) Alicycliphilus denitrificans BC 10103904 YP_004126490.1 CDS Alide_1856 NC_014910.1 1915356 1916078 D PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_1397 OmpA/MotB domain protein; ompa/motb domain-containing protein 1915356..1916078 Alicycliphilus denitrificans BC 10103905 YP_004126491.1 CDS Alide_1857 NC_014910.1 1916158 1916871 D TIGRFAM: ubiquinone biosynthesis O-methyltransferase; KEGG: dia:Dtpsy_1398 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11; ubiquinone biosynthesis o-methyltransferase 1916158..1916871 Alicycliphilus denitrificans BC 10103906 YP_004126492.1 CDS Alide_1858 NC_014910.1 1916868 1917545 D KEGG: ajs:Ajs_2461 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 1916868..1917545 Alicycliphilus denitrificans BC 10103907 YP_004126493.1 CDS Alide_1859 NC_014910.1 1918163 1918834 R PFAM: protein of unknown function DUF159; KEGG: tin:Tint_2914 protein of unknown function DUF159; hypothetical protein complement(1918163..1918834) Alicycliphilus denitrificans BC 10103909 YP_004126494.1 CDS Alide_1860 NC_014910.1 1918890 1919375 D PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: tin:Tint_2913 peptidase S24/S26A/S26B, conserved region; peptidase s24/s26a/s26b 1918890..1919375 Alicycliphilus denitrificans BC 10103910 YP_004126495.1 CDS Alide_1861 NC_014910.1 1919375 1920661 D KEGG: tin:Tint_2912 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 1919375..1920661 Alicycliphilus denitrificans BC 10103911 YP_004126496.1 CDS Alide_1862 NC_014910.1 1920658 1921122 R KEGG: mca:MCA2632 hypothetical protein; hypothetical protein complement(1920658..1921122) Alicycliphilus denitrificans BC 10103912 YP_004126497.1 CDS Alide_1863 NC_014910.1 1921119 1921505 R KEGG: mca:MCA2633 prophage LambdaMc01, site-specific recombinase resolvase family protein, truncation; prophage lambdamc01, site-specific recombinase resolvase family protein, truncation complement(1921119..1921505) Alicycliphilus denitrificans BC 10103913 YP_004126498.1 CDS Alide_1864 NC_014910.1 1921502 1922881 R PFAM: Resolvase domain; Recombinase; KEGG: mca:MCA2634 prophage LambdaMc01, site-specific recombinase resolvase family protein; resolvase domain-containing protein complement(1921502..1922881) Alicycliphilus denitrificans BC 10103914 YP_004126499.1 CDS Alide_1865 NC_014910.1 1922881 1923327 R KEGG: mca:MCA2635 hypothetical protein; hypothetical protein complement(1922881..1923327) Alicycliphilus denitrificans BC 10103915 YP_004126500.1 CDS Alide_1866 NC_014910.1 1923324 1923518 R KEGG: mca:MCA2636 hypothetical protein; hypothetical protein complement(1923324..1923518) Alicycliphilus denitrificans BC 10103916 YP_004126501.1 CDS Alide_1867 NC_014910.1 1923698 1923976 D KEGG: sml:Smlt1898 HTH transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1923698..1923976 Alicycliphilus denitrificans BC 10103917 YP_004126502.1 CDS Alide_1868 NC_014910.1 1923977 1924240 D KEGG: nde:NIDE0076 hypothetical protein; hypothetical protein 1923977..1924240 Alicycliphilus denitrificans BC 10103918 YP_004126503.1 CDS Alide_1869 NC_014910.1 1924725 1926704 R KEGG: ara:Arad_14159 hydantoin utilization protein B; PFAM: Hydantoinase B/oxoprolinase; 5-oxoprolinase complement(1924725..1926704) Alicycliphilus denitrificans BC 10103919 YP_004126504.1 CDS Alide_1871 NC_014910.1 1927947 1928375 D PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase is3/is911 family protein 1927947..1928375 Alicycliphilus denitrificans BC 10103921 YP_004126505.1 CDS Alide_1872 NC_014910.1 1928372 1928704 D PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; is66 orf2 family protein 1928372..1928704 Alicycliphilus denitrificans BC 10103922 YP_004126506.1 CDS Alide_1873 NC_014910.1 1928787 1930301 D KEGG: dia:Dtpsy_2523 transposase IS66; transposase is66 1928787..1930301 Alicycliphilus denitrificans BC 10103923 YP_004126507.1 CDS Alide_1874 NC_014910.1 1931238 1932152 R PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein complement(1931238..1932152) Alicycliphilus denitrificans BC 10103924 YP_004126508.1 CDS Alide_1875 NC_014910.1 1932149 1932472 R PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein complement(1932149..1932472) Alicycliphilus denitrificans BC 10103925 YP_004126509.1 CDS Alide_1877 NC_014910.1 1932782 1933078 R manually curated; KEGG: pol:Bpro_4342 sarcosine oxidase alpha subunit; sarcosine oxidase subunit alpha complement(1932782..1933078) Alicycliphilus denitrificans BC 10103927 YP_004126510.1 CDS Alide_1878 NC_014910.1 1933026 1934186 R PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_4343 FAD dependent oxidoreductase; FAD-dependent oxidoreductase complement(1933026..1934186) Alicycliphilus denitrificans BC 10103928 YP_004126511.1 CDS Alide_1879 NC_014910.1 1934534 1935460 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_4348 LysR family transcriptional regulator; LysR family transcriptional regulator 1934534..1935460 Alicycliphilus denitrificans BC 10103929 YP_004126512.1 CDS Alide_1880 NC_014910.1 1935751 1936677 R TIGRFAM: Glutaminase, core; KEGG: thermolabile glutaminase (glutaminase A); PFAM: Glutaminase, core; glutaminase, core complement(1935751..1936677) Alicycliphilus denitrificans BC 10103930 YP_004126513.1 CDS Alide_1881 NC_014910.1 1936681 1937868 R TIGRFAM: amidohydrolase; KEGG: pol:Bpro_4523 peptidase M20D, amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(1936681..1937868) Alicycliphilus denitrificans BC 10103931 YP_004126514.1 CDS Alide_1882 NC_014910.1 1937906 1939246 R KEGG: rme:Rmet_5758 major facilitator protein family permease; major facilitator protein family permease complement(1937906..1939246) Alicycliphilus denitrificans BC 10103932 YP_004126515.1 CDS Alide_1883 NC_014910.1 1939373 1940275 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4525 LysR family transcriptional regulator; LysR family transcriptional regulator 1939373..1940275 Alicycliphilus denitrificans BC 10103933 YP_004126516.1 CDS Alide_1884 NC_014910.1 1940344 1941141 R KEGG: sde:Sde_2785 hypothetical protein; hypothetical protein complement(1940344..1941141) Alicycliphilus denitrificans BC 10103934 YP_004126517.1 CDS Alide_1885 NC_014910.1 1941276 1941770 R manually curated; KEGG: afr:AFE_1417 acetyltransferase, GNAT family; GNAT family acetyltransferase complement(1941276..1941770) Alicycliphilus denitrificans BC 10103935 YP_004126518.1 CDS Alide_1886 NC_014910.1 1941767 1942033 R PFAM: protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein; hypothetical protein complement(1941767..1942033) Alicycliphilus denitrificans BC 10103936 YP_004126519.1 CDS Alide_1887 NC_014910.1 1942264 1943520 R PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1692 major facilitator superfamily transporter; major facilitator superfamily protein complement(1942264..1943520) Alicycliphilus denitrificans BC 10103937 YP_004126520.1 CDS Alide_1888 NC_014910.1 1943704 1944495 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2008 gluconate 5-dehydrogenase; short-chain dehydrogenase/reductase sdr 1943704..1944495 Alicycliphilus denitrificans BC 10103938 YP_004126521.1 CDS Alide_1889 NC_014910.1 1944559 1944984 D PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_1696 hypothetical protein; thioesterase superfamily protein 1944559..1944984 Alicycliphilus denitrificans BC 10103939 YP_004126522.1 CDS Alide_1890 NC_014910.1 1945078 1946094 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: ajs:Ajs_1697 alcohol dehydrogenase; alcohol dehydrogenase 1945078..1946094 Alicycliphilus denitrificans BC 10103940 YP_004126523.1 CDS Alide_1891 NC_014910.1 1946171 1947094 D KEGG: ajs:Ajs_1699 glutathione S-transferase-related protein; glutathione s-transferase-like protein 1946171..1947094 Alicycliphilus denitrificans BC 10103941 YP_004126524.1 CDS Alide_1892 NC_014910.1 1947174 1947767 R KEGG: dia:Dtpsy_2002 protein of unknown function DUF1566; hypothetical protein complement(1947174..1947767) Alicycliphilus denitrificans BC 10103942 YP_004126525.1 CDS Alide_1893 NC_014910.1 1948256 1949659 D PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1703 major facilitator superfamily transporter; major facilitator superfamily protein 1948256..1949659 Alicycliphilus denitrificans BC 10103943 YP_004126526.1 CDS Alide_1894 NC_014910.1 1949659 1951134 D KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; deoxyribodipyrimidine photo-lyase 1949659..1951134 Alicycliphilus denitrificans BC 10103944 YP_004126527.1 CDS Alide_1895 NC_014910.1 1951139 1951705 R KEGG: ajs:Ajs_1629 hypothetical protein; hypothetical protein complement(1951139..1951705) Alicycliphilus denitrificans BC 10103945 YP_004126528.1 CDS Alide_1896 NC_014910.1 1951686 1954046 R TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: ajs:Ajs_1630 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(1951686..1954046) Alicycliphilus denitrificans BC 10103946 YP_004126529.1 CDS Alide_1897 NC_014910.1 1954155 1955081 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_1631 LysR family transcriptional regulator; LysR family transcriptional regulator 1954155..1955081 Alicycliphilus denitrificans BC 10103947 YP_004126530.1 CDS Alide_1898 NC_014910.1 1955197 1955364 D KEGG: dac:Daci_3074 hypothetical protein; hypothetical protein 1955197..1955364 Alicycliphilus denitrificans BC 10103948 YP_004126531.1 CDS Alide_1900 NC_014910.1 1957390 1957911 R KEGG: dac:Daci_0667 hypothetical protein; hypothetical protein complement(1957390..1957911) Alicycliphilus denitrificans BC 10103950 YP_004126532.1 CDS Alide_1901 NC_014910.1 1958018 1958878 R PFAM: isocitrate lyase and phosphorylmutase; KEGG: dac:Daci_3579 PEP phosphonomutase; isocitrate lyase and phosphorylmutase complement(1958018..1958878) Alicycliphilus denitrificans BC 10103951 YP_004126533.1 CDS Alide_1902 NC_014910.1 1959040 1960203 R KEGG: dac:Daci_3586 AcnD-accessory protein PrpF; TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; acnd-accessory protein prpf complement(1959040..1960203) Alicycliphilus denitrificans BC 10103952 YP_004126534.1 CDS Alide_1903 NC_014910.1 1960207 1962834 R KEGG: dia:Dtpsy_2080 aconitate hydratase; TIGRFAM: 2-methylisocitrate dehydratase, Fe/S-dependent; PFAM: aconitate hydratase domain-containing protein; 2-methylisocitrate dehydratase, fe/s-dependent complement(1960207..1962834) Alicycliphilus denitrificans BC 10103953 YP_004126535.1 CDS Alide_1904 NC_014910.1 1962854 1964014 R TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: ajs:Ajs_1635 methylcitrate synthase; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II complement(1962854..1964014) Alicycliphilus denitrificans BC 10103954 YP_004126536.1 CDS Alide_1905 NC_014910.1 1964011 1964406 R KEGG: dia:Dtpsy_2078 thioesterase superfamily protein; manually curated; PFAM: thioesterase superfamily protein; thioesterase superfamily protein complement(1964011..1964406) Alicycliphilus denitrificans BC 10103955 YP_004126537.1 CDS Alide_1906 NC_014910.1 1964509 1965969 D KEGG: ajs:Ajs_1637 XRE family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; hypothetical protein 1964509..1965969 Alicycliphilus denitrificans BC 10103956 YP_004126538.1 CDS Alide_1907 NC_014910.1 1966081 1966989 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B2225 transcription regulator, LysR family; LysR family transcriptional regulator complement(1966081..1966989) Alicycliphilus denitrificans BC 10103957 YP_004126539.1 CDS Alide_1908 NC_014910.1 1967119 1967502 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B2224 metallothiol transferase; glyoxalase/bleomycin resistance protein/dioxygenase 1967119..1967502 Alicycliphilus denitrificans BC 10103958 YP_004126540.1 CDS Alide_1909 NC_014910.1 1967552 1968619 D KEGG: hse:Hsero_2301 hypothetical protein; hypothetical protein 1967552..1968619 Alicycliphilus denitrificans BC 10103959 YP_004126541.1 CDS Alide_1910 NC_014910.1 1968626 1969072 R KEGG: ajs:Ajs_1639 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RNA-binding s4 domain-containing protein complement(1968626..1969072) Alicycliphilus denitrificans BC 10103960 YP_004126542.1 CDS Alide_1911 NC_014910.1 1969095 1970498 R KEGG: dia:Dtpsy_2074 histidine kinase; PFAM: Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; two-component sensor kinase domain-containing protein complement(1969095..1970498) Alicycliphilus denitrificans BC 10103961 YP_004126543.1 CDS Alide_1912 NC_014910.1 1970495 1971178 R KEGG: ajs:Ajs_1641 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver complement(1970495..1971178) Alicycliphilus denitrificans BC 10103962 YP_004126544.1 CDS Alide_1913 NC_014910.1 1971321 1972280 D KEGG: dia:Dtpsy_2072 hypothetical protein; hypothetical protein 1971321..1972280 Alicycliphilus denitrificans BC 10103963 YP_004126545.1 CDS Alide_1914 NC_014910.1 1972417 1972971 D KEGG: dia:Dtpsy_2071 hypothetical protein; hypothetical protein 1972417..1972971 Alicycliphilus denitrificans BC 10103964 YP_004126546.1 CDS Alide_1915 NC_014910.1 1972971 1974500 D PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 hypothetical protein; hypothetical protein 1972971..1974500 Alicycliphilus denitrificans BC 10103965 YP_004126547.1 CDS Alide_1916 NC_014910.1 1974566 1976755 D KEGG: dia:Dtpsy_2060 D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; PFAM: D-(-)-3-hydroxybutyrate oligomer hydrolase, putative; hydroxybutyrate-dimer hydrolase 1974566..1976755 Alicycliphilus denitrificans BC 10103966 YP_004126548.1 CDS Alide_1917 NC_014910.1 1977073 1977660 R KEGG: ctt:CtCNB1_3704 lipoprotein; lipoprotein complement(1977073..1977660) Alicycliphilus denitrificans BC 10103967 YP_004126549.1 CDS Alide_1918 NC_014910.1 1977845 1978012 R KEGG: dia:Dtpsy_2056 hypothetical protein; hypothetical protein complement(1977845..1978012) Alicycliphilus denitrificans BC 10103968 YP_004126550.1 CDS Alide_1919 NC_014910.1 1978026 1979123 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ajs:Ajs_1649 protein of unknown function DUF395, YeeE/YedE; hypothetical protein complement(1978026..1979123) Alicycliphilus denitrificans BC 10103969 YP_004126551.1 CDS Alide_1920 NC_014910.1 1979218 1980162 R KEGG: dia:Dtpsy_2054 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; rhodanese domain-containing protein complement(1979218..1980162) Alicycliphilus denitrificans BC 10103970 YP_004126552.1 CDS Alide_1921 NC_014910.1 1980277 1981272 R TIGRFAM: ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase; PFAM: ferrochelatase; ferrochelatase complement(1980277..1981272) Alicycliphilus denitrificans BC 10103971 YP_004126553.1 CDS Alide_1922 NC_014910.1 1981291 1982016 D KEGG: dac:Daci_2563 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 1981291..1982016 Alicycliphilus denitrificans BC 10103972 YP_004126554.1 CDS Alide_1923 NC_014910.1 1981988 1984744 R KEGG: dia:Dtpsy_2050 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; ATPase P complement(1981988..1984744) Alicycliphilus denitrificans BC 10103973 YP_004126555.1 CDS Alide_1924 NC_014910.1 1984923 1985729 R PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_1655 alpha/beta hydrolase fold; alpha/beta hydrolase complement(1984923..1985729) Alicycliphilus denitrificans BC 10103974 YP_004126556.1 CDS Alide_1925 NC_014910.1 1985729 1987030 R KEGG: ajs:Ajs_1656 O-acetylhomoserine aminocarboxypropyltransferase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; o-acetylhomoserine/o-acetylserine sulfhydrylase complement(1985729..1987030) Alicycliphilus denitrificans BC 10103975 YP_004126557.1 CDS Alide_1926 NC_014910.1 1987146 1987601 D KEGG: dia:Dtpsy_2047 CBS domain containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; CBS domain-containing protein 1987146..1987601 Alicycliphilus denitrificans BC 10103976 YP_004126558.1 CDS Alide_1927 NC_014910.1 1987695 1988789 D TIGRFAM: chorismate synthase; KEGG: dia:Dtpsy_2046 chorismate synthase; PFAM: chorismate synthase; chorismate synthase 1987695..1988789 Alicycliphilus denitrificans BC 10103977 YP_004126559.1 CDS Alide_1928 NC_014910.1 1988851 1989300 R PFAM: ATP-cone domain protein; KEGG: dia:Dtpsy_2045 transcriptional regulator NrdR; ATP-cone domain-containing protein complement(1988851..1989300) Alicycliphilus denitrificans BC 10103978 YP_004126560.1 CDS Alide_1929 NC_014910.1 1989326 1990570 R KEGG: dia:Dtpsy_2044 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; glycine hydroxymethyltransferase complement(1989326..1990570) Alicycliphilus denitrificans BC 10103979 YP_004126561.1 CDS Alide_1930 NC_014910.1 1990812 1991624 R PFAM: Lytic transglycosylase catalytic; KEGG: dia:Dtpsy_2043 lytic transglycosylase catalytic; lytic transglycosylase complement(1990812..1991624) Alicycliphilus denitrificans BC 10103980 YP_004126562.1 CDS Alide_1931 NC_014910.1 1992342 1996100 D KEGG: ajs:Ajs_1662 hypothetical protein; hypothetical protein 1992342..1996100 Alicycliphilus denitrificans BC 10103981 YP_004126563.1 CDS Alide_1932 NC_014910.1 1996324 1998921 D KEGG: dia:Dtpsy_2041 hypothetical protein; hypothetical protein 1996324..1998921 Alicycliphilus denitrificans BC 10103982 YP_004126564.1 CDS Alide_1933 NC_014910.1 1999399 2001690 D SMART: Cold shock protein; manually curated; KEGG: dia:Dtpsy_1240 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; ribonuclease r 1999399..2001690 Alicycliphilus denitrificans BC 10103985 YP_004126565.1 CDS Alide_1934 NC_014910.1 2001713 2002468 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1241 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 2001713..2002468 Alicycliphilus denitrificans BC 10103986 YP_004126566.1 CDS Alide_1935 NC_014910.1 2002559 2003209 D KEGG: aav:Aave_3388 cytochrome c553-like protein; cytochrome c553-like protein 2002559..2003209 Alicycliphilus denitrificans BC 10103987 YP_004126567.1 CDS Alide_1936 NC_014910.1 2003206 2004495 D KEGG: aav:Aave_3387 cytochrome c, class I; PFAM: cytochrome c class I; gluconate 2-dehydrogenase (acceptor) 2003206..2004495 Alicycliphilus denitrificans BC 10103988 YP_004126568.1 CDS Alide_1937 NC_014910.1 2004515 2004898 D PFAM: Thioredoxin domain-containing protein; KEGG: dia:Dtpsy_1244 hypothetical protein; thioredoxin domain-containing protein 2004515..2004898 Alicycliphilus denitrificans BC 10103989 YP_004126569.1 CDS Alide_1938 NC_014910.1 2005099 2005689 D PFAM: protein of unknown function DUF150; KEGG: dia:Dtpsy_1245 hypothetical protein; hypothetical protein 2005099..2005689 Alicycliphilus denitrificans BC 10103990 YP_004126570.1 CDS Alide_1939 NC_014910.1 2005758 2007242 D TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein; KEGG: dia:Dtpsy_1246 NusA antitermination factor; SMART: KH domain protein; transcription termination factor nusa 2005758..2007242 Alicycliphilus denitrificans BC 10103991 YP_004126571.1 CDS Alide_1940 NC_014910.1 2007267 2010098 D KEGG: dia:Dtpsy_1247 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Initiation factor 2 associated domain protein ; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein; translation initiation factor if-2 2007267..2010098 Alicycliphilus denitrificans BC 10103992 YP_004126572.1 CDS Alide_1941 NC_014910.1 2010102 2010482 D KEGG: aav:Aave_3382 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; ribosome-binding factor a 2010102..2010482 Alicycliphilus denitrificans BC 10103993 YP_004126573.1 CDS Alide_1942 NC_014910.1 2010475 2011479 D KEGG: ajs:Ajs_2559 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase b 2010475..2011479 Alicycliphilus denitrificans BC 10103994 YP_004126574.1 CDS Alide_1943 NC_014910.1 2011476 2013305 D KEGG: ajs:Ajs_2558 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein TypA 2011476..2013305 Alicycliphilus denitrificans BC 10103995 YP_004126575.1 CDS Alide_1944 NC_014910.1 2013373 2014251 R KEGG: vap:Vapar_3272 hypothetical protein; hypothetical protein complement(2013373..2014251) Alicycliphilus denitrificans BC 10103996 YP_004126576.1 CDS Alide_1945 NC_014910.1 2014585 2015676 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_2556 3-hydroxyisobutyryl-CoA hydrolase; enoyl-CoA hydratase 2014585..2015676 Alicycliphilus denitrificans BC 10103997 YP_004126577.1 CDS Alide_1946 NC_014910.1 2015627 2016469 R KEGG: ajs:Ajs_2555 transmembrane anti-sigma factor; transmembrane anti-sigma factor complement(2015627..2016469) Alicycliphilus denitrificans BC 10103998 YP_004126578.1 CDS Alide_1947 NC_014910.1 2016494 2017018 R KEGG: dia:Dtpsy_1254 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 family RNA polymerase sigma factor complement(2016494..2017018) Alicycliphilus denitrificans BC 10103999 YP_004126579.1 CDS Alide_1948 NC_014910.1 2017035 2017400 R KEGG: dia:Dtpsy_1255 secreted repeat of unknown function; secreted repeat protein complement(2017035..2017400) Alicycliphilus denitrificans BC 10104000 YP_004126580.1 CDS Alide_1949 NC_014910.1 2017500 2017973 R KEGG: dia:Dtpsy_1256 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; ssra-binding protein complement(2017500..2017973) Alicycliphilus denitrificans BC 10104001 YP_004126581.1 CDS Alide_1950 NC_014910.1 2018120 2018560 D PFAM: cyclase/dehydrase; KEGG: dia:Dtpsy_1257 cyclase/dehydrase; cyclase/dehydrase 2018120..2018560 Alicycliphilus denitrificans BC 10104002 YP_004126582.1 CDS Alide_1951 NC_014910.1 2018570 2018896 D PFAM: protein of unknown function UPF0125; KEGG: ajs:Ajs_2550 hypothetical protein; hypothetical protein 2018570..2018896 Alicycliphilus denitrificans BC 10104003 YP_004126583.1 CDS Alide_1952 NC_014910.1 2018905 2019408 R KEGG: ajs:Ajs_2549 hypothetical protein; hypothetical protein complement(2018905..2019408) Alicycliphilus denitrificans BC 10104004 YP_004126584.1 CDS Alide_1953 NC_014910.1 2019502 2020977 D SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: dia:Dtpsy_1260 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 2019502..2020977 Alicycliphilus denitrificans BC 10104005 YP_004126585.1 CDS Alide_1954 NC_014910.1 2021051 2022667 D TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; KEGG: dac:Daci_3013 GMP synthase; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; gmp synthase, large subunit 2021051..2022667 Alicycliphilus denitrificans BC 10104006 YP_004126586.1 CDS Alide_1955 NC_014910.1 2022969 2023991 D PFAM: integrase family protein; KEGG: bam:Bamb_2021 phage integrase family protein; integrase family protein 2022969..2023991 Alicycliphilus denitrificans BC 10104007 YP_004126587.1 CDS Alide_1956 NC_014910.1 2023960 2025255 R KEGG: dia:Dtpsy_2288 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase i complement(2023960..2025255) Alicycliphilus denitrificans BC 10104008 YP_004126588.1 CDS Alide_1957 NC_014910.1 2025302 2025574 R PFAM: protein of unknown function DUF339; KEGG: ajs:Ajs_2797 hypothetical protein; hypothetical protein complement(2025302..2025574) Alicycliphilus denitrificans BC 10104009 YP_004126589.1 CDS Alide_1958 NC_014910.1 2025595 2026299 R TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: dac:Daci_2424 succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(2025595..2026299) Alicycliphilus denitrificans BC 10104010 YP_004126590.1 CDS Alide_1959 NC_014910.1 2026328 2028133 R KEGG: dia:Dtpsy_2285 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; succinate dehydrogenase, flavoprotein subunit complement(2026328..2028133) Alicycliphilus denitrificans BC 10104011 YP_004126591.1 CDS Alide_1960 NC_014910.1 2028184 2028549 R TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: aav:Aave_2203 succinate dehydrogenase subunit D; succinate dehydrogenase, hydrophobic membrane anchor protein complement(2028184..2028549) Alicycliphilus denitrificans BC 10104012 YP_004126592.1 CDS Alide_1961 NC_014910.1 2028574 2029005 R KEGG: dia:Dtpsy_2283 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit complement(2028574..2029005) Alicycliphilus denitrificans BC 10104013 YP_004126593.1 CDS Alide_1962 NC_014910.1 2029156 2029947 R KEGG: dia:Dtpsy_2282 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; ubic transcription regulator-associated domain-containing protein complement(2029156..2029947) Alicycliphilus denitrificans BC 10104014 YP_004126594.1 CDS Alide_1963 NC_014910.1 2030130 2031116 D KEGG: dia:Dtpsy_2281 malate dehydrogenase; TIGRFAM: malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; malate dehydrogenase 2030130..2031116 Alicycliphilus denitrificans BC 10104015 YP_004126595.1 CDS Alide_1964 NC_014910.1 2031129 2031920 D KEGG: dac:Daci_2430 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 12; trans-aconitate 2-methyltransferase 2031129..2031920 Alicycliphilus denitrificans BC 10104016 YP_004126596.1 CDS Alide_1965 NC_014910.1 2032128 2032772 D KEGG: dia:Dtpsy_2278 hypothetical protein; hypothetical protein 2032128..2032772 Alicycliphilus denitrificans BC 10104017 YP_004126597.1 CDS Alide_1966 NC_014910.1 2032890 2035481 D KEGG: ajs:Ajs_2787 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: aconitate hydratase 2; PFAM: Aconitase B; aconitate hydratase domain-containing protein; aconitate hydratase 2 2032890..2035481 Alicycliphilus denitrificans BC 10104018 YP_004126598.1 CDS Alide_1967 NC_014910.1 2035701 2036594 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_3364 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2035701..2036594) Alicycliphilus denitrificans BC 10104020 YP_004126599.1 CDS Alide_1968 NC_014910.1 2036701 2038407 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ctt:CtCNB1_3363 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase 2036701..2038407 Alicycliphilus denitrificans BC 10104021 YP_004126600.1 CDS Alide_1969 NC_014910.1 2038514 2039506 D KEGG: ctt:CtCNB1_3361 AccB; hypothetical protein 2038514..2039506 Alicycliphilus denitrificans BC 10104022 YP_004126601.1 CDS Alide_1970 NC_014910.1 2039513 2040673 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ctt:CtCNB1_3358 L-carnitine dehydratase/bile acid-inducible; l-carnitine dehydratase/bile acid-inducible protein f 2039513..2040673 Alicycliphilus denitrificans BC 10104023 YP_004126602.1 CDS Alide_1971 NC_014910.1 2040684 2042033 R KEGG: dac:Daci_2356 glutathione-disulfide reductase; TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; glutathione-disulfide reductase complement(2040684..2042033) Alicycliphilus denitrificans BC 10104024 YP_004126603.1 CDS Alide_1972 NC_014910.1 2042201 2042668 D PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: vei:Veis_4544 2Fe-2S iron-sulfur cluster binding domain-containing protein; (2fe-2S)-binding domain-containing protein 2042201..2042668 Alicycliphilus denitrificans BC 10104025 YP_004126604.1 CDS Alide_1973 NC_014910.1 2042702 2045074 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: vap:Vapar_1594 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase 2042702..2045074 Alicycliphilus denitrificans BC 10104026 YP_004126605.1 CDS Alide_1974 NC_014910.1 2045088 2045879 D KEGG: pol:Bpro_0576 molybdopterin dehydrogenase, FAD-binding; PFAM: molybdopterin dehydrogenase FAD-binding; carbon monoxide dehydrogenase 2045088..2045879 Alicycliphilus denitrificans BC 10104027 YP_004126606.1 CDS Alide_1975 NC_014910.1 2046009 2046923 D KEGG: dac:Daci_2251 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATPase AAA 2046009..2046923 Alicycliphilus denitrificans BC 10104028 YP_004126607.1 CDS Alide_1976 NC_014910.1 2046926 2048167 D PFAM: VWA containing CoxE family protein; KEGG: vei:Veis_4536 VWA containing CoxE family protein; von Willebrand factor A 2046926..2048167 Alicycliphilus denitrificans BC 10104029 YP_004126608.1 CDS Alide_1977 NC_014910.1 2048181 2048732 D PFAM: carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit g 2048181..2048732 Alicycliphilus denitrificans BC 10104030 YP_004126609.1 CDS Alide_1978 NC_014910.1 2048742 2049782 D PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_0572 hypothetical protein; hypothetical protein 2048742..2049782 Alicycliphilus denitrificans BC 10104031 YP_004126610.1 CDS Alide_1979 NC_014910.1 2049782 2050429 D KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase; molybdenum cofactor cytidylyltransferase 2049782..2050429 Alicycliphilus denitrificans BC 10104032 YP_004126611.1 CDS Alide_1980 NC_014910.1 2050437 2051312 R KEGG: dia:Dtpsy_2274 hypothetical protein; hypothetical protein complement(2050437..2051312) Alicycliphilus denitrificans BC 10104033 YP_004126612.1 CDS Alide_1981 NC_014910.1 2051415 2053439 R KEGG: gox:GOX2135 hypothetical protein; hypothetical protein complement(2051415..2053439) Alicycliphilus denitrificans BC 10104034 YP_004126613.1 CDS Alide_1982 NC_014910.1 2053454 2054785 R PFAM: amine oxidase; KEGG: xal:XALc_2703 probable protoporphyrinogen oxidase protein; amine oxidase complement(2053454..2054785) Alicycliphilus denitrificans BC 10104035 YP_004126614.1 CDS Alide_1983 NC_014910.1 2054791 2055756 R manually curated; KEGG: reh:H16_A2892 hypothetical protein; hypothetical protein complement(2054791..2055756) Alicycliphilus denitrificans BC 10104036 YP_004126615.1 CDS Alide_1984 NC_014910.1 2055753 2056766 R KEGG: cph:Cpha266_0350 glycosyl transferase family protein; manually curated; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase complement(2055753..2056766) Alicycliphilus denitrificans BC 10104037 YP_004126616.1 CDS Alide_1985 NC_014910.1 2056865 2058238 R PFAM: peptidase U32; KEGG: dia:Dtpsy_2273 peptidase U32; peptidase u32 complement(2056865..2058238) Alicycliphilus denitrificans BC 10104038 YP_004126617.1 CDS Alide_1986 NC_014910.1 2058287 2059657 R KEGG: dac:Daci_1894 hypothetical protein; hypothetical protein complement(2058287..2059657) Alicycliphilus denitrificans BC 10104039 YP_004126618.1 CDS Alide_1987 NC_014910.1 2059685 2060566 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2444 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2059685..2060566) Alicycliphilus denitrificans BC 10104040 YP_004126619.1 CDS Alide_1988 NC_014910.1 2060710 2061423 D PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_2443 hypothetical protein; hypothetical protein 2060710..2061423 Alicycliphilus denitrificans BC 10104041 YP_004126620.1 CDS Alide_1989 NC_014910.1 2061443 2061976 R KEGG: dia:Dtpsy_2271 two component transcriptional regulator, fis family; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; response regulator receiver complement(2061443..2061976) Alicycliphilus denitrificans BC 10104042 YP_004126621.1 CDS Alide_1990 NC_014910.1 2061977 2063293 R KEGG: ajs:Ajs_2780 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein complement(2061977..2063293) Alicycliphilus denitrificans BC 10104043 YP_004126622.1 CDS Alide_1991 NC_014910.1 2063290 2064099 R PFAM: Surfeit locus 1 family protein; KEGG: ajs:Ajs_2779 surfeit locus 1 family protein; surfeit locus 1 family protein complement(2063290..2064099) Alicycliphilus denitrificans BC 10104044 YP_004126623.1 CDS Alide_1992 NC_014910.1 2064096 2064470 R KEGG: ajs:Ajs_2778 cytochrome c oxidase subunit IV; TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; cytochrome o ubiquinol oxidase subunit iv complement(2064096..2064470) Alicycliphilus denitrificans BC 10104045 YP_004126624.1 CDS Alide_1993 NC_014910.1 2064471 2065103 R KEGG: dia:Dtpsy_2267 cytochrome o ubiquinol oxidase, subunit III; TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; cytochrome o ubiquinol oxidase, subunit iii complement(2064471..2065103) Alicycliphilus denitrificans BC 10104046 YP_004126625.1 CDS Alide_1994 NC_014910.1 2065096 2067102 R TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; KEGG: ajs:Ajs_2776 cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase, subunit i complement(2065096..2067102) Alicycliphilus denitrificans BC 10104047 YP_004126626.1 CDS Alide_1995 NC_014910.1 2067127 2068116 R KEGG: ajs:Ajs_2775 ubiquinol oxidase, subunit II; TIGRFAM: ubiquinol oxidase, subunit II; PFAM: COX aromatic rich domain protein; cytochrome c oxidase subunit II; ubiquinol oxidase, subunit ii complement(2067127..2068116) Alicycliphilus denitrificans BC 10104048 YP_004126627.1 CDS Alide_1996 NC_014910.1 2068418 2069749 D KEGG: ajs:Ajs_2774 general substrate transporter; general substrate transporter 2068418..2069749 Alicycliphilus denitrificans BC 10104049 YP_004126628.1 CDS Alide_1997 NC_014910.1 2069858 2070820 R KEGG: dia:Dtpsy_2263 protein TolA; TIGRFAM: protein TolA; TonB family protein; PFAM: Tol-Pal system TolA; protein tola complement(2069858..2070820) Alicycliphilus denitrificans BC 10104050 YP_004126629.1 CDS Alide_1998 NC_014910.1 2070842 2071267 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2772 biopolymer transport protein ExbD/TolR; biopolymer transport protein exbd/tolr complement(2070842..2071267) Alicycliphilus denitrificans BC 10104051 YP_004126630.1 CDS Alide_1999 NC_014910.1 2071281 2071982 R KEGG: dia:Dtpsy_2261 protein TolQ; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein tolq complement(2071281..2071982) Alicycliphilus denitrificans BC 10104052 YP_004126631.1 CDS Alide_2000 NC_014910.1 2071979 2072401 R KEGG: dia:Dtpsy_2260 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; tol-pal system-associated acyl-CoA thioesterase complement(2071979..2072401) Alicycliphilus denitrificans BC 10104053 YP_004126632.1 CDS Alide_2001 NC_014910.1 2072404 2073588 R PFAM: aminotransferase class I and II; KEGG: dia:Dtpsy_2259 aminotransferase; aminotransferase class i and ii complement(2072404..2073588) Alicycliphilus denitrificans BC 10104054 YP_004126633.1 CDS Alide_2002 NC_014910.1 2073660 2074205 R KEGG: dia:Dtpsy_2258 NusB antitermination factor; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; transcription antitermination factor nusb complement(2073660..2074205) Alicycliphilus denitrificans BC 10104055 YP_004126634.1 CDS Alide_2003 NC_014910.1 2074202 2074666 R KEGG: ajs:Ajs_2767 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase complement(2074202..2074666) Alicycliphilus denitrificans BC 10104056 YP_004126635.1 CDS Alide_2004 NC_014910.1 2074670 2075791 R KEGG: dia:Dtpsy_2256 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(2074670..2075791) Alicycliphilus denitrificans BC 10104057 YP_004126636.1 CDS Alide_2005 NC_014910.1 2075929 2076216 R PFAM: ferredoxin; KEGG: dia:Dtpsy_2255 ferredoxin; ferredoxin complement(2075929..2076216) Alicycliphilus denitrificans BC 10104058 YP_004126637.1 CDS Alide_2006 NC_014910.1 2076574 2077455 R PFAM: NUDIX hydrolase; KEGG: pna:Pnap_2699 NUDIX hydrolase; nudix hydrolase complement(2076574..2077455) Alicycliphilus denitrificans BC 10104059 YP_004126638.1 CDS Alide_2007 NC_014910.1 2077586 2078494 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 2077586..2078494 Alicycliphilus denitrificans BC 10104060 YP_004126639.1 CDS Alide_2008 NC_014910.1 2078602 2080131 D TIGRFAM: glutamate/cysteine ligase; KEGG: dia:Dtpsy_1339 glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase; glutamate/cysteine ligase 2078602..2080131 Alicycliphilus denitrificans BC 10104061 YP_004126640.1 CDS Alide_2009 NC_014910.1 2080177 2082360 D KEGG: vap:Vapar_3567 protein of unknown function DUF893 YccS/YhfK; hypothetical protein 2080177..2082360 Alicycliphilus denitrificans BC 10104062 YP_004126641.1 CDS Alide_2010 NC_014910.1 2082357 2082569 R KEGG: aav:Aave_2269 hypothetical protein; hypothetical protein complement(2082357..2082569) Alicycliphilus denitrificans BC 10104063 YP_004126642.1 CDS Alide_2011 NC_014910.1 2082667 2083032 R PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_4413 endoribonuclease L-PSP; endoribonuclease L-PSP complement(2082667..2083032) Alicycliphilus denitrificans BC 10104064 YP_004126643.1 CDS Alide_2012 NC_014910.1 2083067 2084455 R PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_4414 BFD-like (2Fe-2S)-binding region; hypothetical protein complement(2083067..2084455) Alicycliphilus denitrificans BC 10104065 YP_004126644.1 CDS Alide_2013 NC_014910.1 2084457 2084801 R KEGG: pol:Bpro_4415 hypothetical protein; hypothetical protein complement(2084457..2084801) Alicycliphilus denitrificans BC 10104066 YP_004126645.1 CDS Alide_2014 NC_014910.1 2084791 2085927 R KEGG: pol:Bpro_4416 FAD dependent oxidoreductase; manually curated; PFAM: FAD dependent oxidoreductase; FAD-dependent oxidoreductase complement(2084791..2085927) Alicycliphilus denitrificans BC 10104067 YP_004126646.1 CDS Alide_2015 NC_014910.1 2085972 2086955 R KEGG: dac:Daci_0779 hypothetical protein; hypothetical protein complement(2085972..2086955) Alicycliphilus denitrificans BC 10104068 YP_004126647.1 CDS Alide_2016 NC_014910.1 2087030 2087953 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_4347 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2087030..2087953) Alicycliphilus denitrificans BC 10104069 YP_004126648.1 CDS Alide_2017 NC_014910.1 2088126 2089085 D KEGG: ajs:Ajs_2510 GTP-binding protein, HSR1-related; TIGRFAM: ribosome biogenesis GTP-binding protein YlqF; PFAM: GTP-binding protein HSR1-related; ribosome biogenesis gtp-binding protein ylqf 2088126..2089085 Alicycliphilus denitrificans BC 10104070 YP_004126649.1 CDS Alide_2018 NC_014910.1 2089167 2090996 R KEGG: dia:Dtpsy_1352 hypothetical protein; hypothetical protein complement(2089167..2090996) Alicycliphilus denitrificans BC 10104071 YP_004126650.1 CDS Alide_2019 NC_014910.1 2091043 2091891 R KEGG: dia:Dtpsy_1355 pseudouridine synthase; manually curated; PFAM: pseudouridine synthase; pseudouridine synthase complement(2091043..2091891) Alicycliphilus denitrificans BC 10104072 YP_004126651.1 CDS Alide_2020 NC_014910.1 2091810 2092103 R KEGG: dia:Dtpsy_1356 hypothetical protein; hypothetical protein complement(2091810..2092103) Alicycliphilus denitrificans BC 10104073 YP_004126652.1 CDS Alide_2021 NC_014910.1 2092206 2093132 D PFAM: phosphoesterase DHHA1; KEGG: ajs:Ajs_2502 phosphoesterase, DHHA1; phosphoesterase dhha1 2092206..2093132 Alicycliphilus denitrificans BC 10104074 YP_004126653.1 CDS Alide_2022 NC_014910.1 2093183 2094418 R PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2285 major facilitator superfamily transporter; major facilitator superfamily protein complement(2093183..2094418) Alicycliphilus denitrificans BC 10104075 YP_004126654.1 CDS Alide_2023 NC_014910.1 2094460 2094885 R KEGG: ajs:Ajs_2501 nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); nuclease (snase domain-containing protein) complement(2094460..2094885) Alicycliphilus denitrificans BC 10104076 YP_004126655.1 CDS Alide_2024 NC_014910.1 2094984 2095859 D TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: dia:Dtpsy_1360 RarD protein, DMT superfamily transporter; rard protein, dmt superfamily transporter 2094984..2095859 Alicycliphilus denitrificans BC 10104077 YP_004126656.1 CDS Alide_2025 NC_014910.1 2095893 2096459 R PFAM: pseudouridine synthase; KEGG: dia:Dtpsy_1363 pseudouridine synthase; pseudouridine synthase complement(2095893..2096459) Alicycliphilus denitrificans BC 10104078 YP_004126657.1 CDS Alide_2026 NC_014910.1 2096456 2097286 R PFAM: Peptidase M23; KEGG: ajs:Ajs_2496 peptidase M23B; peptidase m23 complement(2096456..2097286) Alicycliphilus denitrificans BC 10104079 YP_004126658.1 CDS Alide_2027 NC_014910.1 2097559 2098962 D PFAM: fumarate lyase; Fumarase C-like; KEGG: dia:Dtpsy_1365 fumarate lyase; fumarate lyase 2097559..2098962 Alicycliphilus denitrificans BC 10104080 YP_004126659.1 CDS Alide_2028 NC_014910.1 2099035 2099841 R PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: dac:Daci_2483 protein of unknown function DUF306 MetA and HslJ; hypothetical protein complement(2099035..2099841) Alicycliphilus denitrificans BC 10104081 YP_004126660.1 CDS Alide_2029 NC_014910.1 2099907 2100446 R PFAM: protein of unknown function DUF924; KEGG: dia:Dtpsy_3311 protein of unknown function DUF924; hypothetical protein complement(2099907..2100446) Alicycliphilus denitrificans BC 10104082 YP_004126661.1 CDS Alide_2030 NC_014910.1 2100464 2102275 R KEGG: ajs:Ajs_1608 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; glutaminyl-tRNA synthetase complement(2100464..2102275) Alicycliphilus denitrificans BC 10104083 YP_004126662.1 CDS Alide_2031 NC_014910.1 2102415 2102753 D KEGG: dia:Dtpsy_2105 hypothetical protein; hypothetical protein 2102415..2102753 Alicycliphilus denitrificans BC 10104084 YP_004126663.1 CDS Alide_2032 NC_014910.1 2102862 2103311 D TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: ajs:Ajs_1610 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II; 3-dehydroquinate dehydratase 2102862..2103311 Alicycliphilus denitrificans BC 10104085 YP_004126664.1 CDS Alide_2033 NC_014910.1 2103305 2104198 D PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_2103 alpha/beta hydrolase fold protein; alpha/beta hydrolase 2103305..2104198 Alicycliphilus denitrificans BC 10104086 YP_004126665.1 CDS Alide_2034 NC_014910.1 2104195 2104620 D PFAM: Class I peptide chain release factor; KEGG: dia:Dtpsy_2102 class I peptide chain release factor; class i peptide chain release factor 2104195..2104620 Alicycliphilus denitrificans BC 10104087 YP_004126666.1 CDS Alide_2035 NC_014910.1 2104722 2105558 D PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B; extradiol ring-cleavage dioxygenase class III protein subunit B 2104722..2105558 Alicycliphilus denitrificans BC 10104088 YP_004126667.1 CDS Alide_2036 NC_014910.1 2105555 2106250 D PFAM: phospholipase/Carboxylesterase; KEGG: vei:Veis_2297 phospholipase/carboxylesterase; phospholipase/carboxylesterase 2105555..2106250 Alicycliphilus denitrificans BC 10104089 YP_004126668.1 CDS Alide_2037 NC_014910.1 2106431 2107309 D KEGG: ajs:Ajs_1615 hypothetical protein; hypothetical protein 2106431..2107309 Alicycliphilus denitrificans BC 10104090 YP_004126669.1 CDS Alide_2038 NC_014910.1 2107328 2107798 R KEGG: ajs:Ajs_1616 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein complement(2107328..2107798) Alicycliphilus denitrificans BC 10104091 YP_004126670.1 CDS Alide_2039 NC_014910.1 2107902 2110529 D KEGG: ajs:Ajs_1617 2-oxoacid dehydrogenase subunit E1; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; alpha-ketoglutarate dehydrogenase; PFAM: Transketolase domain-containing protein; Transketolase central region; 2-oxo-acid dehydrogenase E1 2107902..2110529 Alicycliphilus denitrificans BC 10104092 YP_004126671.1 CDS Alide_2040 NC_014910.1 2110546 2111832 R PFAM: Amidase; KEGG: bpt:Bpet0082 amidase; amidase complement(2110546..2111832) Alicycliphilus denitrificans BC 10104093 YP_004126672.1 CDS Alide_2041 NC_014910.1 2111841 2112704 R manually curated; KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein complement(2111841..2112704) Alicycliphilus denitrificans BC 10104094 YP_004126673.1 CDS Alide_2042 NC_014910.1 2112728 2113132 R PFAM: Mor transcription activator domain protein; KEGG: bbr:BB3657 phage-related DNA-binding protein; mor transcription activator domain-containing protein complement(2112728..2113132) Alicycliphilus denitrificans BC 10104095 YP_004126674.1 CDS Alide_2043 NC_014910.1 2113122 2113802 R KEGG: cvi:CV_2164 hypothetical protein; hypothetical protein complement(2113122..2113802) Alicycliphilus denitrificans BC 10104096 YP_004126675.1 CDS Alide_2044 NC_014910.1 2113870 2114142 R KEGG: aav:Aave_1666 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(2113870..2114142) Alicycliphilus denitrificans BC 10104097 YP_004126676.1 CDS Alide_2045 NC_014910.1 2114317 2114556 R KEGG: aav:Aave_4127 hypothetical protein; hypothetical protein complement(2114317..2114556) Alicycliphilus denitrificans BC 10104098 YP_004126677.1 CDS Alide_2046 NC_014910.1 2114553 2114777 R KEGG: pol:Bpro_3763 hypothetical protein; hypothetical protein complement(2114553..2114777) Alicycliphilus denitrificans BC 10104099 YP_004126678.1 CDS Alide_2047 NC_014910.1 2114774 2115160 R KEGG: pna:Pnap_3330 hypothetical protein; hypothetical protein complement(2114774..2115160) Alicycliphilus denitrificans BC 10104100 YP_004126679.1 CDS Alide_2048 NC_014910.1 2115160 2115414 R KEGG: gla:GL50803_88750 hypothetical protein; hypothetical protein complement(2115160..2115414) Alicycliphilus denitrificans BC 10104101 YP_004126680.1 CDS Alide_2049 NC_014910.1 2115402 2115560 R hypothetical protein complement(2115402..2115560) Alicycliphilus denitrificans BC 10104102 YP_004126681.1 CDS Alide_2050 NC_014910.1 2115560 2116108 R KEGG: pol:Bpro_3759 hypothetical protein; hypothetical protein complement(2115560..2116108) Alicycliphilus denitrificans BC 10104103 YP_004126682.1 CDS Alide_2051 NC_014910.1 2116121 2116405 R KEGG: bqu:BQ10670 hypothetical protein; hypothetical protein complement(2116121..2116405) Alicycliphilus denitrificans BC 10104104 YP_004126683.1 CDS Alide_2052 NC_014910.1 2116402 2117022 R KEGG: lch:Lcho_2277 hypothetical protein; hypothetical protein complement(2116402..2117022) Alicycliphilus denitrificans BC 10104105 YP_004126684.1 CDS Alide_2053 NC_014910.1 2117022 2117261 R KEGG: glo:Glov_0377 hypothetical protein; hypothetical protein complement(2117022..2117261) Alicycliphilus denitrificans BC 10104106 YP_004126685.1 CDS Alide_2054 NC_014910.1 2117261 2117413 R hypothetical protein complement(2117261..2117413) Alicycliphilus denitrificans BC 10104107 YP_004126686.1 CDS Alide_2055 NC_014910.1 2117416 2118708 R KEGG: sgl:SG0822 hypothetical protein; hypothetical protein complement(2117416..2118708) Alicycliphilus denitrificans BC 10104108 YP_004126687.1 CDS Alide_2056 NC_014910.1 2118668 2120488 R PFAM: Integrase catalytic region; KEGG: cvi:CV_2156 hypothetical protein; integrase catalytic region protein complement(2118668..2120488) Alicycliphilus denitrificans BC 10104109 YP_004126688.1 CDS Alide_2057 NC_014910.1 2120475 2121539 R KEGG: cvi:CV_2155 hypothetical protein; hypothetical protein complement(2120475..2121539) Alicycliphilus denitrificans BC 10104110 YP_004126689.1 CDS Alide_2058 NC_014910.1 2121566 2121874 R PFAM: regulatory protein IclR; KEGG: mfa:Mfla_2714 hypothetical protein; regulatory protein iclr complement(2121566..2121874) Alicycliphilus denitrificans BC 10104111 YP_004126690.1 CDS Alide_2059 NC_014910.1 2121871 2122155 R KEGG: bps:BPSL1153 hypothetical protein; hypothetical protein complement(2121871..2122155) Alicycliphilus denitrificans BC 10104112 YP_004126691.1 CDS Alide_2060 NC_014910.1 2122158 2122628 R KEGG: bbr:BB3644 hypothetical protein; hypothetical protein complement(2122158..2122628) Alicycliphilus denitrificans BC 10104113 YP_004126692.1 CDS Alide_2061 NC_014910.1 2122733 2123170 D KEGG: bbt:BBta_4603 polysaccharide deacetylase; hypothetical protein 2122733..2123170 Alicycliphilus denitrificans BC 10104114 YP_004126693.1 CDS Alide_2062 NC_014910.1 2123106 2123417 R KEGG: gau:GAU_1846 hypothetical protein; hypothetical protein complement(2123106..2123417) Alicycliphilus denitrificans BC 10104115 YP_004126694.1 CDS Alide_2063 NC_014910.1 2123414 2123713 R KEGG: bbr:BB3643 hypothetical protein; hypothetical protein complement(2123414..2123713) Alicycliphilus denitrificans BC 10104116 YP_004126695.1 CDS Alide_2064 NC_014910.1 2123745 2123942 R KEGG: bcj:BCAL1594 hypothetical protein; hypothetical protein complement(2123745..2123942) Alicycliphilus denitrificans BC 10104117 YP_004126696.1 CDS Alide_2065 NC_014910.1 2124038 2124544 D PFAM: CI repressor; KEGG: hsm:HSM_0646 hypothetical protein; ci repressor 2124038..2124544 Alicycliphilus denitrificans BC 10104118 YP_004126697.1 CDS Alide_2066 NC_014910.1 2124572 2125153 D KEGG: nvi:100122395 similar to n6-adenosine-methyltransferase ime4; hypothetical protein 2124572..2125153 Alicycliphilus denitrificans BC 10104119 YP_004126698.1 CDS Alide_2067 NC_014910.1 2125201 2125716 D KEGG: sml:Smlt0146 TPR repeat protein; hypothetical protein 2125201..2125716 Alicycliphilus denitrificans BC 10104120 YP_004126699.1 CDS Alide_2068 NC_014910.1 2125913 2126272 D KEGG: rsc:RCFBP_11706 phage-related membrane protein; membrane protein 2125913..2126272 Alicycliphilus denitrificans BC 10104121 YP_004126700.1 CDS Alide_2069 NC_014910.1 2126275 2126922 D PFAM: Lytic transglycosylase catalytic; KEGG: dvm:DvMF_0723 lytic transglycosylase catalytic; lytic transglycosylase 2126275..2126922 Alicycliphilus denitrificans BC 10104122 YP_004126701.1 CDS Alide_2070 NC_014910.1 2126919 2127131 D KEGG: bcb:BCB4264_A3495 hypothetical protein; hypothetical protein 2126919..2127131 Alicycliphilus denitrificans BC 10104123 YP_004126702.1 CDS Alide_2071 NC_014910.1 2127178 2127711 D KEGG: ctt:CtCNB1_3551 hypothetical protein; hypothetical protein 2127178..2127711 Alicycliphilus denitrificans BC 10104124 YP_004126703.1 CDS Alide_2072 NC_014910.1 2127704 2127961 D TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: pol:Bpro_3778 TraR/DksA family transcriptional regulator; phage/conjugal plasmid c-4 type zinc finger protein, trar family 2127704..2127961 Alicycliphilus denitrificans BC 10104125 YP_004126704.1 CDS Alide_2073 NC_014910.1 2127961 2128263 D KEGG: bbr:BB3635 hypothetical protein; hypothetical protein 2127961..2128263 Alicycliphilus denitrificans BC 10104126 YP_004126705.1 CDS Alide_2074 NC_014910.1 2128260 2128553 D KEGG: bbr:BB3634 hypothetical protein; hypothetical protein 2128260..2128553 Alicycliphilus denitrificans BC 10104127 YP_004126706.1 CDS Alide_2075 NC_014910.1 2128557 2129099 D KEGG: bbr:BB3633 hypothetical protein; hypothetical protein 2128557..2129099 Alicycliphilus denitrificans BC 10104128 YP_004126707.1 CDS Alide_2076 NC_014910.1 2129096 2129239 D KEGG: pap:PSPA7_2455 formate/nitrate transporter; formate/nitrate transporter 2129096..2129239 Alicycliphilus denitrificans BC 10104129 YP_004126708.1 CDS Alide_2077 NC_014910.1 2129236 2130600 D KEGG: mca:MCA2933 prophage MuMc02, terminase, ATPase subunit, putative; prophage mumc02, terminase, atpase subunit, putative 2129236..2130600 Alicycliphilus denitrificans BC 10104130 YP_004126709.1 CDS Alide_2078 NC_014910.1 2130607 2132196 D PFAM: protein of unknown function DUF935; KEGG: slt:Slit_0224 protein of unknown function DUF935; hypothetical protein 2130607..2132196 Alicycliphilus denitrificans BC 10104131 YP_004126710.1 CDS Alide_2079 NC_014910.1 2132306 2133544 D PFAM: head morphogenesis protein SPP1 gp7; KEGG: hdu:HD1557 bacteriophage Mu GP30-like protein; head morphogenesis protein spp1 gp7 2132306..2133544 Alicycliphilus denitrificans BC 10104132 YP_004126711.1 CDS Alide_2080 NC_014910.1 2133664 2134227 D TIGRFAM: phage virion morphogenesis protein; KEGG: hdu:HD1558 bacteriophage Mu G-like protein; phage virion morphogenesis protein 2133664..2134227 Alicycliphilus denitrificans BC 10104133 YP_004126712.1 CDS Alide_2081 NC_014910.1 2134276 2135439 D PFAM: Mu-like prophage I protein; KEGG: pag:PLES_15791 protease (I) and scaffold (Z) proteins; mu-like prophage i protein 2134276..2135439 Alicycliphilus denitrificans BC 10104134 YP_004126713.1 CDS Alide_2082 NC_014910.1 2135463 2135873 D KEGG: mag:amb1767 hypothetical protein; hypothetical protein 2135463..2135873 Alicycliphilus denitrificans BC 10104135 YP_004126714.1 CDS Alide_2083 NC_014910.1 2135901 2136794 D KEGG: mag:amb1768 Mu-like prophage major head subunit gpT; mu-like prophage major head subunit gpt 2135901..2136794 Alicycliphilus denitrificans BC 10104136 YP_004126715.1 CDS Alide_2084 NC_014910.1 2136819 2137121 D KEGG: mag:amb1769 hypothetical protein; hypothetical protein 2136819..2137121 Alicycliphilus denitrificans BC 10104137 YP_004126716.1 CDS Alide_2085 NC_014910.1 2137202 2137738 D PFAM: protein of unknown function DUF1320; KEGG: hdu:HD1562 hypothetical protein; hypothetical protein 2137202..2137738 Alicycliphilus denitrificans BC 10104138 YP_004126717.1 CDS Alide_2086 NC_014910.1 2137745 2138179 D KEGG: hma:rrnAC2056 D-3-phosphoglycerate dehydrogenase; hypothetical protein 2137745..2138179 Alicycliphilus denitrificans BC 10104139 YP_004126718.1 CDS Alide_2087 NC_014910.1 2138176 2138400 D KEGG: fre:Franean1_4038 inner-membrane translocator; inner-membrane translocator 2138176..2138400 Alicycliphilus denitrificans BC 10104140 YP_004126719.1 CDS Alide_2088 NC_014910.1 2138397 2139359 D KEGG: dac:Daci_1328 hypothetical protein; hypothetical protein 2138397..2139359 Alicycliphilus denitrificans BC 10104141 YP_004126720.1 CDS Alide_2089 NC_014910.1 2139404 2139895 D KEGG: sco:SCO4763 hypothetical protein; hypothetical protein 2139404..2139895 Alicycliphilus denitrificans BC 10104142 YP_004126721.1 CDS Alide_2090 NC_014910.1 2139958 2140269 D PFAM: protein of unknown function DUF1799 phage-related; KEGG: mfa:Mfla_2690 hypothetical protein; hypothetical protein 2139958..2140269 Alicycliphilus denitrificans BC 10104143 YP_004126722.1 CDS Alide_2091 NC_014910.1 2140292 2145208 D PFAM: Prophage tail length tape measure; KEGG: pop:POPTR_595161 hypothetical protein; prophage tail length tape measure 2140292..2145208 Alicycliphilus denitrificans BC 10104144 YP_004126723.1 CDS Alide_2092 NC_014910.1 2145205 2146119 D KEGG: aav:Aave_1783 carbohydrate-binding family V/XII protein; carbohydrate-binding family v/xii protein 2145205..2146119 Alicycliphilus denitrificans BC 10104145 YP_004126724.1 CDS Alide_2093 NC_014910.1 2146217 2146789 D KEGG: dac:Daci_1333 hypothetical protein; hypothetical protein 2146217..2146789 Alicycliphilus denitrificans BC 10104146 YP_004126725.1 CDS Alide_2094 NC_014910.1 2146806 2147261 D KEGG: wsu:WS1759 flagellar hook protein FlgE; hypothetical protein 2146806..2147261 Alicycliphilus denitrificans BC 10104147 YP_004126726.1 CDS Alide_2095 NC_014910.1 2147261 2147740 D KEGG: dac:Daci_2627 hypothetical protein; hypothetical protein 2147261..2147740 Alicycliphilus denitrificans BC 10104148 YP_004126727.1 CDS Alide_2096 NC_014910.1 2147737 2148072 D KEGG: scl:sce7319 hypothetical protein; hypothetical protein 2147737..2148072 Alicycliphilus denitrificans BC 10104149 YP_004126728.1 CDS Alide_2097 NC_014910.1 2148069 2148320 D KEGG: rru:Rru_A2371 hydroxyacylglutathione hydrolase; hypothetical protein 2148069..2148320 Alicycliphilus denitrificans BC 10104150 YP_004126729.1 CDS Alide_2098 NC_014910.1 2148334 2148867 D KEGG: rsl:RPSI07_0238 hypothetical protein; hypothetical protein 2148334..2148867 Alicycliphilus denitrificans BC 10104151 YP_004126730.1 CDS Alide_2099 NC_014910.1 2148871 2149548 D KEGG: sil:SPO2726 hypothetical protein; hypothetical protein 2148871..2149548 Alicycliphilus denitrificans BC 10104152 YP_004126731.1 CDS Alide_2101 NC_014910.1 2149688 2150776 R KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein; transposase is4 family protein complement(2149688..2150776) Alicycliphilus denitrificans BC 10104154 YP_004126732.1 CDS Alide_2103 NC_014910.1 2151028 2151564 D KEGG: mno:Mnod_2441 hypothetical protein; hypothetical protein 2151028..2151564 Alicycliphilus denitrificans BC 10104156 YP_004126733.1 CDS Alide_2104 NC_014910.1 2151672 2151911 R KEGG: vap:Vapar_5547 hypothetical protein; hypothetical protein complement(2151672..2151911) Alicycliphilus denitrificans BC 10104157 YP_004126734.1 CDS Alide_2105 NC_014910.1 2152022 2152939 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: hmg:100212933 similar to lysR transcriptional regulator; LysR family transcriptional regulator 2152022..2152939 Alicycliphilus denitrificans BC 10104158 YP_004126735.1 CDS Alide_2106 NC_014910.1 2152974 2153753 D KEGG: vap:Vapar_5148 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2152974..2153753 Alicycliphilus denitrificans BC 10104159 YP_004126736.1 CDS Alide_2107 NC_014910.1 2153906 2155228 D PFAM: major facilitator superfamily MFS_1; KEGG: vap:Vapar_5147 major facilitator superfamily MFS_1; major facilitator superfamily protein 2153906..2155228 Alicycliphilus denitrificans BC 10104160 YP_004126737.1 CDS Alide_2108 NC_014910.1 2155240 2156130 D KEGG: vap:Vapar_5146 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 2155240..2156130 Alicycliphilus denitrificans BC 10104161 YP_004126738.1 CDS Alide_2109 NC_014910.1 2156201 2157214 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_5145 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2156201..2157214 Alicycliphilus denitrificans BC 10104162 YP_004126739.1 CDS Alide_2110 NC_014910.1 2157218 2158480 D PFAM: type III effector Hrp-dependent outers; KEGG: vap:Vapar_5144 type III effector Hrp-dependent outers; type III effector hrp-dependent domain-containing protein 2157218..2158480 Alicycliphilus denitrificans BC 10104163 YP_004126740.1 CDS Alide_2111 NC_014910.1 2158477 2159142 D PFAM: class II aldolase/adducin family protein; KEGG: vap:Vapar_5143 aldolase; class ii aldolase/adducin family protein 2158477..2159142 Alicycliphilus denitrificans BC 10104164 YP_004126741.1 CDS Alide_2112 NC_014910.1 2159152 2159961 D KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; hydroxypyruvate isomerase 2159152..2159961 Alicycliphilus denitrificans BC 10104165 YP_004126742.1 CDS Alide_2113 NC_014910.1 2160003 2160836 R PFAM: protein of unknown function DUF980; KEGG: ajs:Ajs_1618 hypothetical protein; hypothetical protein complement(2160003..2160836) Alicycliphilus denitrificans BC 10104166 YP_004126743.1 CDS Alide_2114 NC_014910.1 2160841 2161623 R PFAM: metallophosphoesterase; KEGG: dia:Dtpsy_2095 UDP-2,3-diacylglucosamine hydrolase; metallophosphoesterase complement(2160841..2161623) Alicycliphilus denitrificans BC 10104167 YP_004126744.1 CDS Alide_2115 NC_014910.1 2161628 2162155 R KEGG: dia:Dtpsy_2094 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; peptidyl-prolyl isomerase complement(2161628..2162155) Alicycliphilus denitrificans BC 10104168 YP_004126745.1 CDS Alide_2116 NC_014910.1 2162177 2162764 R KEGG: dia:Dtpsy_2093 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; peptidyl-prolyl isomerase complement(2162177..2162764) Alicycliphilus denitrificans BC 10104169 YP_004126746.1 CDS Alide_2117 NC_014910.1 2162761 2164131 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: aav:Aave_2318 ErfK/YbiS/YcfS/YnhG; erfk/ybis/ycfs/ynhg family protein complement(2162761..2164131) Alicycliphilus denitrificans BC 10104170 YP_004126747.1 CDS Alide_2118 NC_014910.1 2164210 2165298 R PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: aav:Aave_2319 TPR repeat-containing protein; tetratricopeptide tpr_1 repeat-containing protein complement(2164210..2165298) Alicycliphilus denitrificans BC 10104171 YP_004126748.1 CDS Alide_2119 NC_014910.1 2165522 2166898 D TIGRFAM: cysteinyl-tRNA synthetase; KEGG: ajs:Ajs_1623 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; cysteinyl-tRNA synthetase 2165522..2166898 Alicycliphilus denitrificans BC 10104172 YP_004126749.1 CDS Alide_2120 NC_014910.1 2166944 2167591 D SMART: HhH-GPD family protein; manually curated; KEGG: dia:Dtpsy_2090 HhH-GPD family protein; PFAM: HhH-GPD family protein; DNA-3-methyladenine glycosylase ii 2166944..2167591 Alicycliphilus denitrificans BC 10104173 YP_004126750.1 CDS Alide_2121 NC_014910.1 2167643 2168620 D KEGG: ajs:Ajs_1625 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 2167643..2168620 Alicycliphilus denitrificans BC 10104174 YP_004126751.1 CDS Alide_2122 NC_014910.1 2168688 2169695 D KEGG: ajs:Ajs_1627 tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; tRNA(ile)-lysidine synthetase 2168688..2169695 Alicycliphilus denitrificans BC 10104175 YP_004126752.1 CDS Alide_2123 NC_014910.1 2169732 2171003 D KEGG: aav:Aave_2324 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 2169732..2171003 Alicycliphilus denitrificans BC 10104176 YP_004126753.1 CDS Alide_2124 NC_014910.1 2171050 2172405 R PFAM: Cl- channel voltage-gated family protein; KEGG: aav:Aave_4712 Cl-channel, voltage-gated family protein; cl- channel voltage-gated family protein complement(2171050..2172405) Alicycliphilus denitrificans BC 10104177 YP_004126754.1 CDS Alide_2126 NC_014910.1 2173137 2174051 R PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein complement(2173137..2174051) Alicycliphilus denitrificans BC 10104180 YP_004126755.1 CDS Alide_2127 NC_014910.1 2174048 2174371 R PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein complement(2174048..2174371) Alicycliphilus denitrificans BC 10104181 YP_004126756.1 CDS Alide_2128 NC_014910.1 2174784 2175935 D KEGG: dia:Dtpsy_1685 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 2174784..2175935 Alicycliphilus denitrificans BC 10104182 YP_004126757.1 CDS Alide_2129 NC_014910.1 2175932 2177131 D PFAM: protein of unknown function DUF214; KEGG: dia:Dtpsy_1686 protein of unknown function DUF214; hypothetical protein 2175932..2177131 Alicycliphilus denitrificans BC 10104183 YP_004126758.1 CDS Alide_2130 NC_014910.1 2177136 2177846 D KEGG: ajs:Ajs_1836 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2177136..2177846 Alicycliphilus denitrificans BC 10104184 YP_004126759.1 CDS Alide_2131 NC_014910.1 2177917 2179245 R KEGG: ajs:Ajs_1837 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; lytic murein transglycosylase complement(2177917..2179245) Alicycliphilus denitrificans BC 10104185 YP_004126760.1 CDS Alide_2132 NC_014910.1 2179292 2180728 D PFAM: Exonuclease domain protein; Exonuclease RNase T and DNA polymerase III; KEGG: ajs:Ajs_1838 exonuclease I; SMART: Exonuclease; exodeoxyribonuclease I 2179292..2180728 Alicycliphilus denitrificans BC 10104186 YP_004126761.1 CDS Alide_2133 NC_014910.1 2180700 2181548 D PFAM: Silent information regulator protein Sir2; KEGG: ajs:Ajs_1839 silent information regulator protein Sir2; silent information regulator protein sir2 2180700..2181548 Alicycliphilus denitrificans BC 10104187 YP_004126762.1 CDS Alide_2134 NC_014910.1 2181681 2184044 D KEGG: dia:Dtpsy_1696 phytochrome sensor protein; PFAM: protein of unknown function UPF0118; GAF domain protein; SMART: GAF domain protein; hypothetical protein 2181681..2184044 Alicycliphilus denitrificans BC 10104188 YP_004126763.1 CDS Alide_2135 NC_014910.1 2184026 2184595 R PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_3219 GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase complement(2184026..2184595) Alicycliphilus denitrificans BC 10104189 YP_004126764.1 CDS Alide_2136 NC_014910.1 2184592 2185221 R KEGG: dia:Dtpsy_1697 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase complement(2184592..2185221) Alicycliphilus denitrificans BC 10104190 YP_004126765.1 CDS Alide_2137 NC_014910.1 2185310 2186296 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dia:Dtpsy_1698 pyridoxal-5'-phosphate-dependent protein beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta complement(2185310..2186296) Alicycliphilus denitrificans BC 10104191 YP_004126766.1 CDS Alide_2138 NC_014910.1 2186547 2187251 D PFAM: protein of unknown function DUF28; KEGG: dia:Dtpsy_1700 hypothetical protein; hypothetical protein 2186547..2187251 Alicycliphilus denitrificans BC 10104192 YP_004126767.1 CDS Alide_2140 NC_014910.1 2187915 2189339 D TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG; cytochrome c oxidase accessory protein ccog 2187915..2189339 Alicycliphilus denitrificans BC 10104194 YP_004126768.1 CDS Alide_2141 NC_014910.1 2189366 2190784 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ara:Arad_12230 cytochrome bd-type quinol oxidase subunit 1; cytochrome bd ubiquinol oxidase subunit i 2189366..2190784 Alicycliphilus denitrificans BC 10104195 YP_004126769.1 CDS Alide_2142 NC_014910.1 2190788 2191798 D KEGG: msl:Msil_2643 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit ii 2190788..2191798 Alicycliphilus denitrificans BC 10104196 YP_004126770.1 CDS Alide_2143 NC_014910.1 2191798 2191944 D PFAM: Protein of unknown function DUF2474; KEGG: ara:Arad_12232 hypothetical protein; hypothetical protein 2191798..2191944 Alicycliphilus denitrificans BC 10104197 YP_004126771.1 CDS Alide_2144 NC_014910.1 2192365 2193060 R PFAM: LrgB family protein; KEGG: dia:Dtpsy_2405 LrgB family protein; lrgb family protein complement(2192365..2193060) Alicycliphilus denitrificans BC 10104198 YP_004126772.1 CDS Alide_2145 NC_014910.1 2193057 2193458 R PFAM: LrgA family protein; KEGG: ctt:CtCNB1_3605 LrgA; lrga family protein complement(2193057..2193458) Alicycliphilus denitrificans BC 10104199 YP_004126773.1 CDS Alide_2146 NC_014910.1 2193667 2195094 D KEGG: mpt:Mpe_A0752 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2193667..2195094 Alicycliphilus denitrificans BC 10104200 YP_004126774.1 CDS Alide_2147 NC_014910.1 2195183 2195884 R PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_1701 glutathione S-transferase domain protein; glutathione s-transferase domain-containing protein complement(2195183..2195884) Alicycliphilus denitrificans BC 10104201 YP_004126775.1 CDS Alide_2148 NC_014910.1 2195955 2197460 R PFAM: protein of unknown function DUF853 NPT hydrolase; KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase putative; hypothetical protein complement(2195955..2197460) Alicycliphilus denitrificans BC 10104202 YP_004126776.1 CDS Alide_2149 NC_014910.1 2197533 2198252 D PFAM: protein of unknown function DUF28; KEGG: dia:Dtpsy_1703 hypothetical protein; hypothetical protein 2197533..2198252 Alicycliphilus denitrificans BC 10104203 YP_004126777.1 CDS Alide_2150 NC_014910.1 2198249 2199535 D TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: ajs:Ajs_1899 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine--glycine ligase 2198249..2199535 Alicycliphilus denitrificans BC 10104204 YP_004126778.1 CDS Alide_2151 NC_014910.1 2199535 2200461 D KEGG: dia:Dtpsy_1705 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase; coproporphyrinogen oxidase 2199535..2200461 Alicycliphilus denitrificans BC 10104205 YP_004126779.1 CDS Alide_2152 NC_014910.1 2200545 2201210 D KEGG: dia:Dtpsy_1706 iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap family protein 2200545..2201210 Alicycliphilus denitrificans BC 10104206 YP_004126780.1 CDS Alide_2153 NC_014910.1 2201210 2201677 D PFAM: protein of unknown function DUF163; KEGG: aav:Aave_3199 rRNA large subunit methyltransferase; hypothetical protein 2201210..2201677 Alicycliphilus denitrificans BC 10104207 YP_004126781.1 CDS Alide_2154 NC_014910.1 2201745 2202350 D KEGG: dia:Dtpsy_1708 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 2201745..2202350 Alicycliphilus denitrificans BC 10104208 YP_004126782.1 CDS Alide_2155 NC_014910.1 2202356 2203075 R KEGG: dia:Dtpsy_1709 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein complement(2202356..2203075) Alicycliphilus denitrificans BC 10104209 YP_004126783.1 CDS Alide_2156 NC_014910.1 2203282 2204877 R KEGG: dia:Dtpsy_1710 cytochrome d1 heme region; PFAM: cytochrome c class I; hydroxylamine reductase complement(2203282..2204877) Alicycliphilus denitrificans BC 10104210 YP_004126784.1 CDS Alide_2157 NC_014910.1 2204870 2206090 R PFAM: Radical SAM domain protein; KEGG: dia:Dtpsy_1711 radical SAM domain protein; radical SAM domain-containing protein complement(2204870..2206090) Alicycliphilus denitrificans BC 10104211 YP_004126785.1 CDS Alide_2158 NC_014910.1 2206093 2206572 R KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator; AsnC family transcriptional regulator complement(2206093..2206572) Alicycliphilus denitrificans BC 10104212 YP_004126786.1 CDS Alide_2159 NC_014910.1 2206553 2208055 R KEGG: dia:Dtpsy_1714 transcriptional regulator, AsnC family; hypothetical protein complement(2206553..2208055) Alicycliphilus denitrificans BC 10104213 YP_004126787.1 CDS Alide_2160 NC_014910.1 2208059 2209267 R KEGG: ajs:Ajs_1910 cytochrome d1, heme region; cytochrome d1, heme region protein complement(2208059..2209267) Alicycliphilus denitrificans BC 10104214 YP_004126788.1 CDS Alide_2161 NC_014910.1 2209264 2209617 R KEGG: dia:Dtpsy_1716 hypothetical protein; hypothetical protein complement(2209264..2209617) Alicycliphilus denitrificans BC 10104215 YP_004126789.1 CDS Alide_2162 NC_014910.1 2209640 2211364 R KEGG: dia:Dtpsy_1717 hydroxylamine reductase; hydroxylamine reductase complement(2209640..2211364) Alicycliphilus denitrificans BC 10104216 YP_004126790.1 CDS Alide_2163 NC_014910.1 2211576 2212403 D KEGG: dia:Dtpsy_1718 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C-methyltransferase 2211576..2212403 Alicycliphilus denitrificans BC 10104217 YP_004126791.1 CDS Alide_2164 NC_014910.1 2212485 2213972 D KEGG: ajs:Ajs_1914 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; ribonuclease, rne/rng family 2212485..2213972 Alicycliphilus denitrificans BC 10104218 YP_004126792.1 CDS Alide_2165 NC_014910.1 2214148 2215833 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pca:Pcar_0095 sensory transduction system, regulatory protein; SMART: GGDEF domain containing protein; diguanylate cyclase 2214148..2215833 Alicycliphilus denitrificans BC 10104219 YP_004126793.1 CDS Alide_2167 NC_014910.1 2216609 2217760 R PFAM: aminotransferase class I and II; KEGG: dia:Dtpsy_1720 aminotransferase; aminotransferase class i and ii complement(2216609..2217760) Alicycliphilus denitrificans BC 10104221 YP_004126794.1 CDS Alide_2168 NC_014910.1 2217902 2218843 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1721 transcriptional regulator CysB-like protein; LysR family transcriptional regulator complement(2217902..2218843) Alicycliphilus denitrificans BC 10104222 YP_004126795.1 CDS Alide_2169 NC_014910.1 2218887 2219267 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: dia:Dtpsy_1722 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin b12) biosynthesis cbix protein complement(2218887..2219267) Alicycliphilus denitrificans BC 10104223 YP_004126796.1 CDS Alide_2170 NC_014910.1 2219301 2220401 R PFAM: permease YjgP/YjgQ family protein; KEGG: dia:Dtpsy_1723 permease YjgP/YjgQ family protein; permease yjgp/yjgq family protein complement(2219301..2220401) Alicycliphilus denitrificans BC 10104224 YP_004126797.1 CDS Alide_2171 NC_014910.1 2220398 2221492 R KEGG: dia:Dtpsy_1724 permease YjgP/YjgQ family protein; manually curated; PFAM: permease YjgP/YjgQ family protein; permease yjgp/yjgq family protein complement(2220398..2221492) Alicycliphilus denitrificans BC 10104225 YP_004126798.1 CDS Alide_2172 NC_014910.1 2221516 2223009 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ajs:Ajs_1921 PepA aminopeptidase; peptidase m17 leucyl aminopeptidase domain-containing protein 2221516..2223009 Alicycliphilus denitrificans BC 10104226 YP_004126799.1 CDS Alide_2173 NC_014910.1 2223009 2223473 D PFAM: DNA polymerase III chi subunit HolC; KEGG: ajs:Ajs_1922 DNA polymerase III chi subunit, HolC; DNA polymerase iii chi subunit holc 2223009..2223473 Alicycliphilus denitrificans BC 10104227 YP_004126800.1 CDS Alide_2174 NC_014910.1 2223473 2223874 D KEGG: dia:Dtpsy_1727 hypothetical protein; hypothetical protein 2223473..2223874 Alicycliphilus denitrificans BC 10104228 YP_004126801.1 CDS Alide_2175 NC_014910.1 2224003 2225136 D PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1925 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 2224003..2225136 Alicycliphilus denitrificans BC 10104229 YP_004126802.1 CDS Alide_2176 NC_014910.1 2225227 2226234 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ajs:Ajs_1926 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein complement(2225227..2226234) Alicycliphilus denitrificans BC 10104230 YP_004126803.1 CDS Alide_2177 NC_014910.1 2227138 2227401 D KEGG: bmd:BMD_3062 N-acetylmuramoyl-L-alanine amidase; hypothetical protein 2227138..2227401 Alicycliphilus denitrificans BC 10104231 YP_004126804.1 CDS Alide_2180 NC_014910.1 2228723 2229181 D manually curated; KEGG: ajs:Ajs_1927 hypothetical protein; hypothetical protein 2228723..2229181 Alicycliphilus denitrificans BC 10104234 YP_004126805.1 CDS Alide_2181 NC_014910.1 2229206 2229955 D KEGG: dia:Dtpsy_1731 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2257; hypothetical protein 2229206..2229955 Alicycliphilus denitrificans BC 10104235 YP_004126806.1 CDS Alide_2182 NC_014910.1 2230050 2230490 D PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_1732 UspA domain protein; uspa domain-containing protein 2230050..2230490 Alicycliphilus denitrificans BC 10104236 YP_004126807.1 CDS Alide_2183 NC_014910.1 2230552 2231064 R KEGG: dac:Daci_4355 hypothetical protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; hemerythrin-like metal-binding protein complement(2230552..2231064) Alicycliphilus denitrificans BC 10104237 YP_004126808.1 CDS Alide_2184 NC_014910.1 2231177 2232154 R KEGG: ajs:Ajs_1930 hypothetical protein; hypothetical protein complement(2231177..2232154) Alicycliphilus denitrificans BC 10104238 YP_004126809.1 CDS Alide_2185 NC_014910.1 2232295 2233479 R TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_1734 beta-ketothiolase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase complement(2232295..2233479) Alicycliphilus denitrificans BC 10104239 YP_004126810.1 CDS Alide_2186 NC_014910.1 2233588 2234358 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1735 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(2233588..2234358) Alicycliphilus denitrificans BC 10104240 YP_004126811.1 CDS Alide_2187 NC_014910.1 2234392 2235069 R PFAM: pseudouridine synthase; KEGG: ajs:Ajs_1933 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase complement(2234392..2235069) Alicycliphilus denitrificans BC 10104241 YP_004126812.1 CDS Alide_2188 NC_014910.1 2235059 2237227 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; KEGG: dia:Dtpsy_1737 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; pas sensor protein complement(2235059..2237227) Alicycliphilus denitrificans BC 10104242 YP_004126813.1 CDS Alide_2189 NC_014910.1 2237273 2237671 R KEGG: dia:Dtpsy_1738 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type; peptidyl-prolyl isomerase complement(2237273..2237671) Alicycliphilus denitrificans BC 10104243 YP_004126814.1 CDS Alide_2190 NC_014910.1 2237951 2238745 D KEGG: dia:Dtpsy_1772 two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; LuxR family transcriptional regulator 2237951..2238745 Alicycliphilus denitrificans BC 10104244 YP_004126815.1 CDS Alide_2191 NC_014910.1 2238783 2239643 D KEGG: dia:Dtpsy_1773 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; ATP-binding domain-containing protein 2238783..2239643 Alicycliphilus denitrificans BC 10104245 YP_004126816.1 CDS Alide_2192 NC_014910.1 2239735 2240322 D KEGG: dia:Dtpsy_1406 hypothetical protein; hypothetical protein 2239735..2240322 Alicycliphilus denitrificans BC 10104246 YP_004126817.1 CDS Alide_2193 NC_014910.1 2240330 2241160 R PFAM: Redoxin domain protein; KEGG: ajs:Ajs_2433 redoxin domain-containing protein; redoxin domain-containing protein complement(2240330..2241160) Alicycliphilus denitrificans BC 10104247 YP_004126818.1 CDS Alide_2194 NC_014910.1 2241387 2242010 D KEGG: dia:Dtpsy_1426 2',5' RNA ligase; 2'-5' RNA ligase 2241387..2242010 Alicycliphilus denitrificans BC 10104248 YP_004126819.1 CDS Alide_2195 NC_014910.1 2242085 2242564 R KEGG: ajs:Ajs_2417 hypothetical protein; hypothetical protein complement(2242085..2242564) Alicycliphilus denitrificans BC 10104249 YP_004126820.1 CDS Alide_2196 NC_014910.1 2242691 2243161 R KEGG: dia:Dtpsy_1431 hypothetical protein; hypothetical protein complement(2242691..2243161) Alicycliphilus denitrificans BC 10104250 YP_004126821.1 CDS Alide_2197 NC_014910.1 2243158 2243601 R KEGG: dia:Dtpsy_1432 transmembrane anti-sigma factor; transmembrane anti-sigma factor complement(2243158..2243601) Alicycliphilus denitrificans BC 10104251 YP_004126822.1 CDS Alide_2198 NC_014910.1 2243617 2244171 R KEGG: dia:Dtpsy_1433 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 family RNA polymerase sigma factor complement(2243617..2244171) Alicycliphilus denitrificans BC 10104252 YP_004126823.1 CDS Alide_2199 NC_014910.1 2244274 2244594 D KEGG: dia:Dtpsy_1434 hypothetical protein; hypothetical protein 2244274..2244594 Alicycliphilus denitrificans BC 10104253 YP_004126824.1 CDS Alide_2200 NC_014910.1 2244646 2246097 D KEGG: dia:Dtpsy_1435 23S rRNA 5-methyluridine methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; RNA methyltransferase, trma family 2244646..2246097 Alicycliphilus denitrificans BC 10104254 YP_004126825.1 CDS Alide_2201 NC_014910.1 2246109 2247452 D TIGRFAM: D-serine ammonia-lyase; KEGG: ajs:Ajs_2250 D-serine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; d-serine ammonia-lyase 2246109..2247452 Alicycliphilus denitrificans BC 10104255 YP_004126826.1 CDS Alide_2202 NC_014910.1 2247466 2248056 R PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: ajs:Ajs_2244 hypothetical protein; hypothetical protein complement(2247466..2248056) Alicycliphilus denitrificans BC 10104256 YP_004126827.1 CDS Alide_2203 NC_014910.1 2248238 2248696 D KEGG: har:HEAR1365 azurin precursor; TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; azurin 2248238..2248696 Alicycliphilus denitrificans BC 10104257 YP_004126828.1 CDS Alide_2204 NC_014910.1 2248773 2251199 D KEGG: dia:Dtpsy_1631 radical SAM domain protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 2248773..2251199 Alicycliphilus denitrificans BC 10104258 YP_004126829.1 CDS Alide_2205 NC_014910.1 2251309 2252505 R KEGG: ajs:Ajs_2151 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II; aspartate transaminase complement(2251309..2252505) Alicycliphilus denitrificans BC 10104259 YP_004126830.1 CDS Alide_2206 NC_014910.1 2252621 2254708 D TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: dia:Dtpsy_1636 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein; excinuclease abc, b subunit 2252621..2254708 Alicycliphilus denitrificans BC 10104260 YP_004126831.1 CDS Alide_2207 NC_014910.1 2254959 2255495 D KEGG: dia:Dtpsy_1637 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; iron-sulfur cluster assembly transcription factor iscr 2254959..2255495 Alicycliphilus denitrificans BC 10104261 YP_004126832.1 CDS Alide_2208 NC_014910.1 2255571 2256791 D TIGRFAM: cysteine desulfurase IscS; KEGG: dia:Dtpsy_1638 cysteine desulfurase IscS; PFAM: aminotransferase class V; cysteine desulfurase iscs 2255571..2256791 Alicycliphilus denitrificans BC 10104262 YP_004126833.1 CDS Alide_2209 NC_014910.1 2256814 2257215 D KEGG: dia:Dtpsy_1639 FeS cluster assembly scaffold IscU; TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; fes cluster assembly scaffold iscu 2256814..2257215 Alicycliphilus denitrificans BC 10104263 YP_004126834.1 CDS Alide_2210 NC_014910.1 2257223 2257546 D KEGG: dia:Dtpsy_1640 iron-sulfur cluster assembly protein IscA; TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly protein isca 2257223..2257546 Alicycliphilus denitrificans BC 10104264 YP_004126835.1 CDS Alide_2211 NC_014910.1 2257604 2258122 D TIGRFAM: co-chaperone Hsc20; PFAM: HSC20 oligomerisation; heat shock protein DnaJ domain protein; KEGG: dia:Dtpsy_1641 co-chaperone Hsc20; SMART: heat shock protein DnaJ domain protein; co-chaperone hsc20 2257604..2258122 Alicycliphilus denitrificans BC 10104265 YP_004126836.1 CDS Alide_2212 NC_014910.1 2258159 2260027 D KEGG: dia:Dtpsy_1642 chaperone protein HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; fe-s protein assembly chaperone hsca 2258159..2260027 Alicycliphilus denitrificans BC 10104266 YP_004126837.1 CDS Alide_2213 NC_014910.1 2260063 2260401 D KEGG: dia:Dtpsy_1643 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; (2Fe-2S)-binding protein 2260063..2260401 Alicycliphilus denitrificans BC 10104267 YP_004126838.1 CDS Alide_2214 NC_014910.1 2260401 2261129 D SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: ajs:Ajs_2138 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; DNA polymerase III subunit epsilon 2260401..2261129 Alicycliphilus denitrificans BC 10104268 YP_004126839.1 CDS Alide_2215 NC_014910.1 2261423 2262535 D PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2136 FAD dependent oxidoreductase; FAD-dependent oxidoreductase 2261423..2262535 Alicycliphilus denitrificans BC 10104271 YP_004126840.1 CDS Alide_2216 NC_014910.1 2262668 2262976 D PFAM: protein of unknown function DUF883 ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB; hypothetical protein 2262668..2262976 Alicycliphilus denitrificans BC 10104272 YP_004126841.1 CDS Alide_2217 NC_014910.1 2263001 2263405 D KEGG: dia:Dtpsy_1648 hypothetical protein; hypothetical protein 2263001..2263405 Alicycliphilus denitrificans BC 10104273 YP_004126842.1 CDS Alide_2218 NC_014910.1 2263407 2263706 D KEGG: ajs:Ajs_2133 hypothetical protein; hypothetical protein 2263407..2263706 Alicycliphilus denitrificans BC 10104274 YP_004126843.1 CDS Alide_2219 NC_014910.1 2263759 2264805 R TIGRFAM: dihydroorotate dehydrogenase; KEGG: ajs:Ajs_2132 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase; dihydroorotate dehydrogenase complement(2263759..2264805) Alicycliphilus denitrificans BC 10104275 YP_004126844.1 CDS Alide_2220 NC_014910.1 2264841 2265530 D TIGRFAM: ribose 5-phosphate isomerase; KEGG: ajs:Ajs_2131 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 2264841..2265530 Alicycliphilus denitrificans BC 10104276 YP_004126845.1 CDS Alide_2221 NC_014910.1 2265527 2266168 R PFAM: glutaredoxin; KEGG: dia:Dtpsy_1652 glutaredoxin; glutaredoxin complement(2265527..2266168) Alicycliphilus denitrificans BC 10104277 YP_004126846.1 CDS Alide_2222 NC_014910.1 2266290 2268323 R KEGG: ajs:Ajs_2129 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; oligopeptidase a complement(2266290..2268323) Alicycliphilus denitrificans BC 10104278 YP_004126847.1 CDS Alide_2223 NC_014910.1 2268361 2269209 R KEGG: dac:Daci_3983 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methylenetetrahydrofolate dehydrogenase (nadp(+)) complement(2268361..2269209) Alicycliphilus denitrificans BC 10104279 YP_004126848.1 CDS Alide_2224 NC_014910.1 2269292 2269918 R KEGG: ctt:CtCNB1_2245 two component transcriptional regulator, LuxR; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver complement(2269292..2269918) Alicycliphilus denitrificans BC 10104280 YP_004126849.1 CDS Alide_2225 NC_014910.1 2269915 2272467 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dia:Dtpsy_1656 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; pas sensor protein complement(2269915..2272467) Alicycliphilus denitrificans BC 10104281 YP_004126850.1 CDS Alide_2226 NC_014910.1 2272664 2275360 D KEGG: dia:Dtpsy_1657 pyruvate dehydrogenase subunit E1; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: Transketolase domain-containing protein; 2-oxo-acid dehydrogenase E1 2272664..2275360 Alicycliphilus denitrificans BC 10104282 YP_004126851.1 CDS Alide_2227 NC_014910.1 2275379 2277028 D KEGG: dia:Dtpsy_1658 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 2275379..2277028 Alicycliphilus denitrificans BC 10104283 YP_004126852.1 CDS Alide_2228 NC_014910.1 2277042 2278871 D KEGG: dia:Dtpsy_1659 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; biotin/lipoyl attachment domain-containing protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 2277042..2278871 Alicycliphilus denitrificans BC 10104284 YP_004126853.1 CDS Alide_2229 NC_014910.1 2279023 2279304 D KEGG: lth:KLTH0B01034g KLTH0B01034p; hypothetical protein 2279023..2279304 Alicycliphilus denitrificans BC 10104285 YP_004126854.1 CDS Alide_2230 NC_014910.1 2279294 2279668 D KEGG: mgr:MGG_07539 hypothetical protein; hypothetical protein 2279294..2279668 Alicycliphilus denitrificans BC 10104286 YP_004126855.1 CDS Alide_2231 NC_014910.1 2280168 2281136 D KEGG: aav:Aave_2466 hypothetical protein; hypothetical protein 2280168..2281136 Alicycliphilus denitrificans BC 10104287 YP_004126856.1 CDS Alide_2232 NC_014910.1 2281203 2282633 D PFAM: filamentation induced by cAMP protein Fic; KEGG: pna:Pnap_3558 filamentation induced by cAMP protein Fic; Fic family protein 2281203..2282633 Alicycliphilus denitrificans BC 10104288 YP_004126857.1 CDS Alide_2233 NC_014910.1 2282693 2283592 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rfr:Rfer_0879 LysR family transcriptional regulator; LysR family transcriptional regulator 2282693..2283592 Alicycliphilus denitrificans BC 10104289 YP_004126858.1 CDS Alide_2234 NC_014910.1 2283699 2284400 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: cai:Caci_5818 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 2283699..2284400 Alicycliphilus denitrificans BC 10104290 YP_004126859.1 CDS Alide_2235 NC_014910.1 2284397 2285761 D PFAM: MmgE/PrpD family protein; KEGG: rsh:Rsph17029_3583 MmgE/PrpD family protein; mmge/prpd family protein 2284397..2285761 Alicycliphilus denitrificans BC 10104291 YP_004126860.1 CDS Alide_2236 NC_014910.1 2285779 2286768 D KEGG: reu:Reut_B3949 hypothetical protein; hypothetical protein 2285779..2286768 Alicycliphilus denitrificans BC 10104292 YP_004126861.1 CDS Alide_2237 NC_014910.1 2286886 2287827 D KEGG: dia:Dtpsy_1661 hypothetical protein; hypothetical protein 2286886..2287827 Alicycliphilus denitrificans BC 10104293 YP_004126862.1 CDS Alide_2239 NC_014910.1 2288487 2289371 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ajs:Ajs_2093 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 2288487..2289371 Alicycliphilus denitrificans BC 10104295 YP_004126863.1 CDS Alide_2240 NC_014910.1 2289375 2290145 R KEGG: rpc:RPC_0065 OmpA/MotB; hypothetical protein complement(2289375..2290145) Alicycliphilus denitrificans BC 10104296 YP_004126864.1 CDS Alide_2241 NC_014910.1 2290088 2290594 R PFAM: protein of unknown function DUF55; KEGG: aav:Aave_2834 hypothetical protein; hypothetical protein complement(2290088..2290594) Alicycliphilus denitrificans BC 10104297 YP_004126865.1 CDS Alide_2242 NC_014910.1 2290591 2290842 R PFAM: Transglycosylase-associated protein; KEGG: aav:Aave_2831 transglycosylase-associated protein; transglycosylase-associated protein complement(2290591..2290842) Alicycliphilus denitrificans BC 10104298 YP_004126866.1 CDS Alide_2243 NC_014910.1 2291018 2291572 R KEGG: ajs:Ajs_2091 NLP/P60 protein; manually curated; PFAM: NLP/P60 protein; nlp/p60 protein complement(2291018..2291572) Alicycliphilus denitrificans BC 10104299 YP_004126867.1 CDS Alide_2244 NC_014910.1 2291886 2293310 D PFAM: amino acid permease-associated region; KEGG: dac:Daci_3739 D-alanine/D-serine/glycine permease; amino acid permease 2291886..2293310 Alicycliphilus denitrificans BC 10104300 YP_004126868.1 CDS Alide_2245 NC_014910.1 2293310 2293414 D hypothetical protein 2293310..2293414 Alicycliphilus denitrificans BC 10104301 YP_004126869.1 CDS Alide_2246 NC_014910.1 2293411 2294829 D KEGG: dia:Dtpsy_1665 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 2293411..2294829 Alicycliphilus denitrificans BC 10104302 YP_004126870.1 CDS Alide_2247 NC_014910.1 2295026 2298202 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE domain protein; PAS fold domain protein; KEGG: dia:Dtpsy_1667 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase 2295026..2298202 Alicycliphilus denitrificans BC 10104303 YP_004126871.1 CDS Alide_2248 NC_014910.1 2298217 2298546 D PFAM: protein of unknown function UPF0060; KEGG: ajs:Ajs_2087 hypothetical protein; hypothetical protein 2298217..2298546 Alicycliphilus denitrificans BC 10104304 YP_004126872.1 CDS Alide_2249 NC_014910.1 2298701 2299360 R PFAM: protein of unknown function DUF1555; KEGG: nar:Saro_2119 hypothetical protein; hypothetical protein complement(2298701..2299360) Alicycliphilus denitrificans BC 10104305 YP_004126873.1 CDS Alide_2250 NC_014910.1 2299629 2303153 D KEGG: dia:Dtpsy_1669 chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; chromosome segregation protein smc 2299629..2303153 Alicycliphilus denitrificans BC 10104306 YP_004126874.1 CDS Alide_2251 NC_014910.1 2303164 2304258 D SMART: ZipA FtsZ-binding region protein; KEGG: dia:Dtpsy_1670 ZipA FtsZ-binding region; zipa ftsz-binding region protein 2303164..2304258 Alicycliphilus denitrificans BC 10104307 YP_004126875.1 CDS Alide_2252 NC_014910.1 2304270 2306423 D SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; TIGRFAM: DNA ligase, NAD-dependent; KEGG: ajs:Ajs_2083 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein; DNA ligase, nad-dependent 2304270..2306423 Alicycliphilus denitrificans BC 10104308 YP_004126876.1 CDS Alide_2253 NC_014910.1 2306427 2307362 D PFAM: Patatin; KEGG: ajs:Ajs_2082 patatin; patatin 2306427..2307362 Alicycliphilus denitrificans BC 10104309 YP_004126877.1 CDS Alide_2254 NC_014910.1 2307550 2310033 D KEGG: ajs:Ajs_2081 glycosyl transferase family protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; peptidoglycan glycosyltransferase 2307550..2310033 Alicycliphilus denitrificans BC 10104310 YP_004126878.1 CDS Alide_2255 NC_014910.1 2310044 2311240 D PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_1675 major facilitator superfamily MFS_1; major facilitator superfamily protein 2310044..2311240 Alicycliphilus denitrificans BC 10104311 YP_004126879.1 CDS Alide_2256 NC_014910.1 2311233 2311781 R PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_1676 NUDIX hydrolase; nudix hydrolase complement(2311233..2311781) Alicycliphilus denitrificans BC 10104312 YP_004126880.1 CDS Alide_2257 NC_014910.1 2311849 2312544 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dia:Dtpsy_1677 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (faa) hydrolase complement(2311849..2312544) Alicycliphilus denitrificans BC 10104313 YP_004126881.1 CDS Alide_2258 NC_014910.1 2312658 2313323 D KEGG: dia:Dtpsy_1678 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; maleylacetoacetate isomerase 2312658..2313323 Alicycliphilus denitrificans BC 10104314 YP_004126882.1 CDS Alide_2259 NC_014910.1 2313316 2314164 D PFAM: protein of unknown function DUF152; KEGG: dia:Dtpsy_1679 protein of unknown function DUF152; hypothetical protein 2313316..2314164 Alicycliphilus denitrificans BC 10104315 YP_004126883.1 CDS Alide_2260 NC_014910.1 2314084 2314374 R KEGG: dia:Dtpsy_1680 hypothetical protein; hypothetical protein complement(2314084..2314374) Alicycliphilus denitrificans BC 10104316 YP_004126884.1 CDS Alide_2261 NC_014910.1 2314525 2316234 D KEGG: dia:Dtpsy_1681 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; poly(r)-hydroxyalkanoic acid synthase, class i 2314525..2316234 Alicycliphilus denitrificans BC 10104317 YP_004126885.1 CDS Alide_2262 NC_014910.1 2316314 2317492 D TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ajs:Ajs_2073 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 2316314..2317492 Alicycliphilus denitrificans BC 10104318 YP_004126886.1 CDS Alide_2263 NC_014910.1 2317652 2318389 D KEGG: ajs:Ajs_2072 3-ketoacyl-(acyl-carrier-protein) reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; acetoacetyl-CoA reductase 2317652..2318389 Alicycliphilus denitrificans BC 10104319 YP_004126887.1 CDS Alide_2264 NC_014910.1 2318818 2320746 R KEGG: ajs:Ajs_2071 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2318818..2320746) Alicycliphilus denitrificans BC 10104320 YP_004126888.1 CDS Alide_2265 NC_014910.1 2320802 2321788 R KEGG: dac:Daci_3609 hypothetical protein; hypothetical protein complement(2320802..2321788) Alicycliphilus denitrificans BC 10104321 YP_004126889.1 CDS Alide_2266 NC_014910.1 2321846 2323075 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_3610 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase complement(2321846..2323075) Alicycliphilus denitrificans BC 10104322 YP_004126890.1 CDS Alide_2267 NC_014910.1 2323077 2324657 R PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_3611 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(2323077..2324657) Alicycliphilus denitrificans BC 10104323 YP_004126891.1 CDS Alide_2268 NC_014910.1 2324762 2325766 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_3612 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2324762..2325766) Alicycliphilus denitrificans BC 10104324 YP_004126892.1 CDS Alide_2269 NC_014910.1 2325768 2326691 R KEGG: ajs:Ajs_2070 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-n5) methyltransferase, ribosomal protein l3-specific complement(2325768..2326691) Alicycliphilus denitrificans BC 10104325 YP_004126893.1 CDS Alide_2270 NC_014910.1 2326688 2327866 R KEGG: ajs:Ajs_2069 succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; succinyl-diaminopimelate desuccinylase complement(2326688..2327866) Alicycliphilus denitrificans BC 10104326 YP_004126894.1 CDS Alide_2271 NC_014910.1 2327890 2329053 R KEGG: dia:Dtpsy_1891 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; twitching motility protein complement(2327890..2329053) Alicycliphilus denitrificans BC 10104327 YP_004126895.1 CDS Alide_2272 NC_014910.1 2329116 2329940 R TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: dia:Dtpsy_1890 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(2329116..2329940) Alicycliphilus denitrificans BC 10104328 YP_004126896.1 CDS Alide_2273 NC_014910.1 2329948 2331150 R KEGG: dia:Dtpsy_1889 succinyldiaminopimelate transaminase; TIGRFAM: succinyldiaminopimelate transaminase; PFAM: aminotransferase class I and II; succinyldiaminopimelate transaminase complement(2329948..2331150) Alicycliphilus denitrificans BC 10104329 YP_004126897.1 CDS Alide_2274 NC_014910.1 2331242 2331925 R KEGG: dia:Dtpsy_1887 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; electron transport complex, rnfabcdge type, b subunit complement(2331242..2331925) Alicycliphilus denitrificans BC 10104330 YP_004126898.1 CDS Alide_2275 NC_014910.1 2331941 2333257 R KEGG: ajs:Ajs_2063 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; polyhydroxyalkanoate depolymerase complement(2331941..2333257) Alicycliphilus denitrificans BC 10104331 YP_004126899.1 CDS Alide_2276 NC_014910.1 2333433 2334491 R PFAM: RelA/SpoT domain protein; KEGG: dia:Dtpsy_1885 RelA/SpoT domain protein; rela/spot domain-containing protein complement(2333433..2334491) Alicycliphilus denitrificans BC 10104332 YP_004126900.1 CDS Alide_2277 NC_014910.1 2334558 2335508 R KEGG: dia:Dtpsy_1883 tRNA-dihydrouridine synthase A; TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; tim-barrel protein, yjbn family complement(2334558..2335508) Alicycliphilus denitrificans BC 10104333 YP_004126901.1 CDS Alide_2278 NC_014910.1 2335793 2336254 D PFAM: MaoC domain protein dehydratase; KEGG: pde:Pden_4680 dehydratase; MaoC domain-containing protein 2335793..2336254 Alicycliphilus denitrificans BC 10104334 YP_004126902.1 CDS Alide_2279 NC_014910.1 2336258 2336866 D PFAM: regulatory protein TetR; KEGG: pde:Pden_4681 TetR family transcriptional regulator; regulatory protein tetr 2336258..2336866 Alicycliphilus denitrificans BC 10104335 YP_004126903.1 CDS Alide_2280 NC_014910.1 2337055 2338179 D PFAM: Saccharopine dehydrogenase; KEGG: dia:Dtpsy_1846 saccharopine dehydrogenase; saccharopine dehydrogenase 2337055..2338179 Alicycliphilus denitrificans BC 10104336 YP_004126904.1 CDS Alide_2281 NC_014910.1 2338176 2340011 R PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_1847 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(2338176..2340011) Alicycliphilus denitrificans BC 10104337 YP_004126905.1 CDS Alide_2282 NC_014910.1 2340138 2340773 R KEGG: dia:Dtpsy_1848 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(2340138..2340773) Alicycliphilus denitrificans BC 10104338 YP_004126906.1 CDS Alide_2283 NC_014910.1 2340787 2341719 R PFAM: pyruvate carboxyltransferase; KEGG: sno:Snov_3532 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(2340787..2341719) Alicycliphilus denitrificans BC 10104339 YP_004126907.1 CDS Alide_2284 NC_014910.1 2341722 2342687 R KEGG: aav:Aave_3152 hypothetical protein; hypothetical protein complement(2341722..2342687) Alicycliphilus denitrificans BC 10104340 YP_004126908.1 CDS Alide_2285 NC_014910.1 2342725 2343948 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hne:HNE_1079 L-carnitine dehydratase; l-carnitine dehydratase/bile acid-inducible protein f complement(2342725..2343948) Alicycliphilus denitrificans BC 10104341 YP_004126909.1 CDS Alide_2286 NC_014910.1 2344052 2345488 R KEGG: rpt:Rpal_2644 transcriptional regulator, XRE family; PFAM: Protein of unknown function DUF2083,transcriptional regulator; protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; hypothetical protein complement(2344052..2345488) Alicycliphilus denitrificans BC 10104342 YP_004126910.1 CDS Alide_2287 NC_014910.1 2345619 2347760 D TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: dia:Dtpsy_1849 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 2345619..2347760 Alicycliphilus denitrificans BC 10104343 YP_004126911.1 CDS Alide_2288 NC_014910.1 2347777 2348784 D KEGG: dia:Dtpsy_1850 arginine/ornithine transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; lao/ao transport system atpase 2347777..2348784 Alicycliphilus denitrificans BC 10104344 YP_004126912.1 CDS Alide_2289 NC_014910.1 2348841 2350373 D PFAM: carboxyl transferase; KEGG: ajs:Ajs_2042 carboxyl transferase; carboxyl transferase 2348841..2350373 Alicycliphilus denitrificans BC 10104345 YP_004126913.1 CDS Alide_2290 NC_014910.1 2350531 2352579 D KEGG: dia:Dtpsy_1853 carbamoyl-phosphate synthase L chain ATP-binding; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxylase 2350531..2352579 Alicycliphilus denitrificans BC 10104346 YP_004126914.1 CDS Alide_2291 NC_014910.1 2352638 2353099 D KEGG: dia:Dtpsy_1854 lactoylglutathione lyase; lactoylglutathione lyase 2352638..2353099 Alicycliphilus denitrificans BC 10104347 YP_004126915.1 CDS Alide_2292 NC_014910.1 2353466 2354539 D SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: ajs:Ajs_2045 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; biotin synthase 2353466..2354539 Alicycliphilus denitrificans BC 10104348 YP_004126916.1 CDS Alide_2293 NC_014910.1 2354623 2355630 R KEGG: pol:Bpro_1449 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal complement(2354623..2355630) Alicycliphilus denitrificans BC 10104349 YP_004126917.1 CDS Alide_2294 NC_014910.1 2355752 2356432 D KEGG: pol:Bpro_1450 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 2355752..2356432 Alicycliphilus denitrificans BC 10104350 YP_004126918.1 CDS Alide_2295 NC_014910.1 2356398 2357786 D KEGG: pol:Bpro_1451 histidine kinase; PFAM: Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; two-component sensor kinase domain-containing protein 2356398..2357786 Alicycliphilus denitrificans BC 10104351 YP_004126919.1 CDS Alide_2296 NC_014910.1 2357783 2358754 D KEGG: pol:Bpro_1452 hypothetical protein; hypothetical protein 2357783..2358754 Alicycliphilus denitrificans BC 10104352 YP_004126920.1 CDS Alide_2297 NC_014910.1 2358758 2359204 R PFAM: OsmC family protein; KEGG: pna:Pnap_2833 OsmC family protein; osmc family protein complement(2358758..2359204) Alicycliphilus denitrificans BC 10104353 YP_004126921.1 CDS Alide_2298 NC_014910.1 2359201 2359494 R KEGG: pna:Pnap_2832 rhodanese domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; rhodanese domain-containing protein complement(2359201..2359494) Alicycliphilus denitrificans BC 10104354 YP_004126922.1 CDS Alide_2299 NC_014910.1 2359592 2359801 R KEGG: pna:Pnap_2829 hypothetical protein; hypothetical protein complement(2359592..2359801) Alicycliphilus denitrificans BC 10104355 YP_004126923.1 CDS Alide_2300 NC_014910.1 2359829 2360965 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: alv:Alvin_1195 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fad-dependent pyridine nucleotide-disulfide oxidoreductase complement(2359829..2360965) Alicycliphilus denitrificans BC 10104356 YP_004126924.1 CDS Alide_2301 NC_014910.1 2360962 2362254 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pna:Pnap_2831 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fad-dependent pyridine nucleotide-disulfide oxidoreductase complement(2360962..2362254) Alicycliphilus denitrificans BC 10104357 YP_004126925.1 CDS Alide_2302 NC_014910.1 2362297 2363718 R PFAM: outer membrane efflux protein; KEGG: pna:Pnap_2830 TolC family type I secretion outer membrane protein; outer membrane efflux protein complement(2362297..2363718) Alicycliphilus denitrificans BC 10104358 YP_004126926.1 CDS Alide_2303 NC_014910.1 2363715 2366948 R PFAM: acriflavin resistance protein; KEGG: pna:Pnap_2828 acriflavin resistance protein; acriflavin resistance protein complement(2363715..2366948) Alicycliphilus denitrificans BC 10104359 YP_004126927.1 CDS Alide_2304 NC_014910.1 2366950 2367990 R KEGG: pna:Pnap_2827 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit complement(2366950..2367990) Alicycliphilus denitrificans BC 10104360 YP_004126928.1 CDS Alide_2305 NC_014910.1 2368090 2368428 D KEGG: pna:Pnap_2826 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; regulatory protein arsr 2368090..2368428 Alicycliphilus denitrificans BC 10104361 YP_004126929.1 CDS Alide_2307 NC_014910.1 2368830 2369615 R PFAM: HpcH/HpaI aldolase; KEGG: tjr:TherJR_2256 2-dehydro-3-deoxyglucarate aldolase; hpch/hpai aldolase complement(2368830..2369615) Alicycliphilus denitrificans BC 10104363 YP_004126930.1 CDS Alide_2308 NC_014910.1 2369651 2370349 R KEGG: rpa:RPA2008 hypothetical protein; hypothetical protein complement(2369651..2370349) Alicycliphilus denitrificans BC 10104364 YP_004126931.1 CDS Alide_2309 NC_014910.1 2370359 2371375 R KEGG: cti:RALTA_B0210 conserved hypothetical protein; periplasmic receptor protein, UPF0065; hypothetical protein complement(2370359..2371375) Alicycliphilus denitrificans BC 10104365 YP_004126932.1 CDS Alide_2310 NC_014910.1 2371400 2372392 R KEGG: bpt:Bpet3225 secreted protein; secreted protein complement(2371400..2372392) Alicycliphilus denitrificans BC 10104366 YP_004126933.1 CDS Alide_2311 NC_014910.1 2372407 2373447 R KEGG: bxe:Bxe_C0307 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; periplasmic-binding protein/LacI transcriptional regulator complement(2372407..2373447) Alicycliphilus denitrificans BC 10104367 YP_004126934.1 CDS Alide_2312 NC_014910.1 2373444 2374205 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bph:Bphy_7421 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(2373444..2374205) Alicycliphilus denitrificans BC 10104368 YP_004126935.1 CDS Alide_2313 NC_014910.1 2374208 2375527 R TIGRFAM: histidinol dehydrogenase; KEGG: bxe:Bxe_C0309 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; histidinol dehydrogenase complement(2374208..2375527) Alicycliphilus denitrificans BC 10104369 YP_004126936.1 CDS Alide_2314 NC_014910.1 2375754 2376359 D PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2324 methyltransferase type 11; type 11 methyltransferase 2375754..2376359 Alicycliphilus denitrificans BC 10104370 YP_004126937.1 CDS Alide_2315 NC_014910.1 2376370 2377038 D PFAM: DTW domain containing protein; KEGG: dia:Dtpsy_1758 DTW domain containing protein; dtw domain-containing protein 2376370..2377038 Alicycliphilus denitrificans BC 10104371 YP_004126938.1 CDS Alide_2316 NC_014910.1 2377055 2377636 D KEGG: dia:Dtpsy_1757 uncharacterized peroxidase-related enzyme; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 2377055..2377636 Alicycliphilus denitrificans BC 10104372 YP_004126939.1 CDS Alide_2317 NC_014910.1 2377701 2379437 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ajs:Ajs_1955 sulfatase; sulfatase complement(2377701..2379437) Alicycliphilus denitrificans BC 10104373 YP_004126940.1 CDS Alide_2318 NC_014910.1 2379442 2380170 R KEGG: dia:Dtpsy_1755 PAP2 (acid phosphatase) superfamily protein-like protein; pap2 (acid phosphatase) superfamily protein-like protein complement(2379442..2380170) Alicycliphilus denitrificans BC 10104374 YP_004126941.1 CDS Alide_2319 NC_014910.1 2380304 2380978 D KEGG: dia:Dtpsy_1754 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 2380304..2380978 Alicycliphilus denitrificans BC 10104375 YP_004126942.1 CDS Alide_2320 NC_014910.1 2380982 2382349 D KEGG: dia:Dtpsy_1753 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 2380982..2382349 Alicycliphilus denitrificans BC 10104376 YP_004126943.1 CDS Alide_2321 NC_014910.1 2382365 2383135 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4306 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase complement(2382365..2383135) Alicycliphilus denitrificans BC 10104377 YP_004126944.1 CDS Alide_2322 NC_014910.1 2383140 2384102 R KEGG: bbr:BB4305 hypothetical protein; hypothetical protein complement(2383140..2384102) Alicycliphilus denitrificans BC 10104378 YP_004126945.1 CDS Alide_2323 NC_014910.1 2384144 2385151 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbr:BB4304 zinc-binding dehydrogenase; alcohol dehydrogenase complement(2384144..2385151) Alicycliphilus denitrificans BC 10104379 YP_004126946.1 CDS Alide_2324 NC_014910.1 2385151 2386368 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4303 racemase; l-carnitine dehydratase/bile acid-inducible protein f complement(2385151..2386368) Alicycliphilus denitrificans BC 10104380 YP_004126947.1 CDS Alide_2325 NC_014910.1 2386506 2387675 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB1199 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2386506..2387675 Alicycliphilus denitrificans BC 10104381 YP_004126948.1 CDS Alide_2326 NC_014910.1 2387692 2388747 D KEGG: bbr:BB1197 hypothetical protein; hypothetical protein 2387692..2388747 Alicycliphilus denitrificans BC 10104382 YP_004126949.1 CDS Alide_2327 NC_014910.1 2388765 2389901 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: cti:RALTA_B0352 acyl-CoA transferases/carnitine dehydratase; l-carnitine dehydratase/bile acid-inducible protein f 2388765..2389901 Alicycliphilus denitrificans BC 10104383 YP_004126950.1 CDS Alide_2328 NC_014910.1 2390053 2390694 D PFAM: regulatory protein TetR; KEGG: bbr:BB4302 TetR family transcriptional regulator; regulatory protein tetr 2390053..2390694 Alicycliphilus denitrificans BC 10104384 YP_004126951.1 CDS Alide_2329 NC_014910.1 2390844 2392559 D KEGG: dia:Dtpsy_1751 electron-transferring-flavoprotein dehydrogenase; PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2390844..2392559 Alicycliphilus denitrificans BC 10104385 YP_004126952.1 CDS Alide_2330 NC_014910.1 2392798 2393766 D PFAM: protein of unknown function DUF534; KEGG: ajs:Ajs_1949 hypothetical protein; hypothetical protein 2392798..2393766 Alicycliphilus denitrificans BC 10104386 YP_004126953.1 CDS Alide_2331 NC_014910.1 2393848 2394735 D PFAM: inner-membrane translocator; KEGG: dac:Daci_4312 inner-membrane translocator; inner-membrane translocator 2393848..2394735 Alicycliphilus denitrificans BC 10104387 YP_004126954.1 CDS Alide_2332 NC_014910.1 2394748 2395542 D KEGG: dia:Dtpsy_1748 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2394748..2395542 Alicycliphilus denitrificans BC 10104388 YP_004126955.1 CDS Alide_2333 NC_014910.1 2395717 2397642 R KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein complement(2395717..2397642) Alicycliphilus denitrificans BC 10104389 YP_004126956.1 CDS Alide_2334 NC_014910.1 2397754 2398629 R PFAM: alpha/beta hydrolase fold; KEGG: vap:Vapar_5337 alpha/beta hydrolase fold protein; alpha/beta hydrolase complement(2397754..2398629) Alicycliphilus denitrificans BC 10104390 YP_004126957.1 CDS Alide_2335 NC_014910.1 2398643 2400223 R KEGG: azo:azo3873 glucase dehydrogenase alpha subunit; PFAM: glucose-methanol-choline oxidoreductase; monooxygenase FAD-binding; gluconate 2-dehydrogenase (acceptor) complement(2398643..2400223) Alicycliphilus denitrificans BC 10104391 YP_004126958.1 CDS Alide_2336 NC_014910.1 2400256 2400837 R KEGG: azo:azo3872 hypothetical protein; hypothetical protein complement(2400256..2400837) Alicycliphilus denitrificans BC 10104392 YP_004126959.1 CDS Alide_2337 NC_014910.1 2400894 2401607 R PFAM: biotin/lipoate A/B protein ligase; KEGG: azo:azo3871 lipoate protein ligase; biotin/lipoate a/b protein ligase complement(2400894..2401607) Alicycliphilus denitrificans BC 10104393 YP_004126960.1 CDS Alide_2338 NC_014910.1 2401604 2402317 R KEGG: azo:azo3870 hypothetical protein; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; dihydrolipoyllysine-residue acetyltransferase complement(2401604..2402317) Alicycliphilus denitrificans BC 10104394 YP_004126961.1 CDS Alide_2339 NC_014910.1 2402314 2402559 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rfr:Rfer_3967 biotin/lipoyl attachment; biotin/lipoyl attachment domain-containing protein complement(2402314..2402559) Alicycliphilus denitrificans BC 10104395 YP_004126962.1 CDS Alide_2340 NC_014910.1 2402556 2403593 R PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: rfr:Rfer_3966 transketolase; transketolase central region protein complement(2402556..2403593) Alicycliphilus denitrificans BC 10104396 YP_004126963.1 CDS Alide_2341 NC_014910.1 2403619 2404626 R KEGG: azo:azo3867 acetoin dehydrogenase, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) complement(2403619..2404626) Alicycliphilus denitrificans BC 10104397 YP_004126964.1 CDS Alide_2342 NC_014910.1 2404962 2405423 R KEGG: dia:Dtpsy_1745 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein complement(2404962..2405423) Alicycliphilus denitrificans BC 10104398 YP_004126965.1 CDS Alide_2343 NC_014910.1 2405709 2406680 D KEGG: ajs:Ajs_1941 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; trap dicarboxylate transporter subunit DctP 2405709..2406680 Alicycliphilus denitrificans BC 10104399 YP_004126966.1 CDS Alide_2344 NC_014910.1 2406756 2407250 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dia:Dtpsy_1743 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter dctq component 2406756..2407250 Alicycliphilus denitrificans BC 10104400 YP_004126967.1 CDS Alide_2345 NC_014910.1 2407247 2408524 D KEGG: dia:Dtpsy_1742 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM 2407247..2408524 Alicycliphilus denitrificans BC 10104401 YP_004126968.1 CDS Alide_2346 NC_014910.1 2408543 2409610 R KEGG: bpt:Bpet1117 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein complement(2408543..2409610) Alicycliphilus denitrificans BC 10104402 YP_004126969.1 CDS Alide_2347 NC_014910.1 2409941 2411074 D KEGG: aav:Aave_3145 glycine cleavage system T protein; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; glycine cleavage system t protein 2409941..2411074 Alicycliphilus denitrificans BC 10104403 YP_004126970.1 CDS Alide_2348 NC_014910.1 2411161 2411535 D KEGG: dia:Dtpsy_1740 glycine cleavage system H protein; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; glycine cleavage system h protein 2411161..2411535 Alicycliphilus denitrificans BC 10104404 YP_004126971.1 CDS Alide_2349 NC_014910.1 2411665 2414553 D KEGG: dia:Dtpsy_1739 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: Glycine cleavage system P-protein-like; glycine dehydrogenase 2411665..2414553 Alicycliphilus denitrificans BC 10104405 YP_004126972.1 CDS Alide_2350 NC_014910.1 2414712 2414972 D PFAM: protein of unknown function DUF156; KEGG: ajs:Ajs_2799 hypothetical protein; hypothetical protein 2414712..2414972 Alicycliphilus denitrificans BC 10104406 YP_004126973.1 CDS Alide_2351 NC_014910.1 2414996 2416111 D KEGG: dia:Dtpsy_2290 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase 2414996..2416111 Alicycliphilus denitrificans BC 10104407 YP_004126974.1 CDS Alide_2352 NC_014910.1 2416221 2417081 D TIGRFAM: S-formylglutathione hydrolase; KEGG: ajs:Ajs_2801 carboxylesterase; PFAM: esterase; s-formylglutathione hydrolase 2416221..2417081 Alicycliphilus denitrificans BC 10104408 YP_004126975.1 CDS Alide_2353 NC_014910.1 2417092 2417271 R hypothetical protein complement(2417092..2417271) Alicycliphilus denitrificans BC 10104409 YP_004126976.1 CDS Alide_2354 NC_014910.1 2417345 2418232 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_2228 transcriptional regulator, LysR family; LysR family transcriptional regulator 2417345..2418232 Alicycliphilus denitrificans BC 10104410 YP_004126977.1 CDS Alide_2355 NC_014910.1 2418229 2419347 R PFAM: Radical SAM domain protein; KEGG: ajs:Ajs_2803 radical SAM domain-containing protein; radical SAM domain-containing protein complement(2418229..2419347) Alicycliphilus denitrificans BC 10104411 YP_004126978.1 CDS Alide_2356 NC_014910.1 2419615 2420022 D PFAM: transcription elongation factor GreA/GreB domain-containing protein; KEGG: ajs:Ajs_2805 GreA/GreB family elongation factor; transcription elongation factor GreA/GreB domain-containing protein 2419615..2420022 Alicycliphilus denitrificans BC 10104412 YP_004126979.1 CDS Alide_2357 NC_014910.1 2420069 2421226 R PFAM: acyltransferase 3; KEGG: dia:Dtpsy_2295 acyltransferase 3; acyltransferase complement(2420069..2421226) Alicycliphilus denitrificans BC 10104413 YP_004126980.1 CDS Alide_2358 NC_014910.1 2421293 2422249 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(2421293..2422249) Alicycliphilus denitrificans BC 10104414 YP_004126981.1 CDS Alide_2359 NC_014910.1 2422328 2424118 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2297 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(2422328..2424118) Alicycliphilus denitrificans BC 10104415 YP_004126982.1 CDS Alide_2360 NC_014910.1 2424202 2425134 R PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha complement(2424202..2425134) Alicycliphilus denitrificans BC 10104416 YP_004126983.1 CDS Alide_2361 NC_014910.1 2425152 2425901 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunits alpha/beta complement(2425152..2425901) Alicycliphilus denitrificans BC 10104417 YP_004126984.1 CDS Alide_2362 NC_014910.1 2426073 2426852 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_2301 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase complement(2426073..2426852) Alicycliphilus denitrificans BC 10104418 YP_004126985.1 CDS Alide_2363 NC_014910.1 2426867 2427826 R PFAM: histone deacetylase superfamily; KEGG: ajs:Ajs_2813 histone deacetylase superfamily protein; histone deacetylase superfamily protein complement(2426867..2427826) Alicycliphilus denitrificans BC 10104419 YP_004126986.1 CDS Alide_2364 NC_014910.1 2427865 2428785 D KEGG: dia:Dtpsy_2303 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; ATPase AAA 2427865..2428785 Alicycliphilus denitrificans BC 10104420 YP_004126987.1 CDS Alide_2365 NC_014910.1 2428791 2429810 D PFAM: protein of unknown function DUF58; KEGG: ajs:Ajs_2815 hypothetical protein; hypothetical protein 2428791..2429810 Alicycliphilus denitrificans BC 10104421 YP_004126988.1 CDS Alide_2366 NC_014910.1 2429890 2431947 D KEGG: ajs:Ajs_2816 transglutaminase domain-containing protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein; transglutaminase domain-containing protein 2429890..2431947 Alicycliphilus denitrificans BC 10104422 YP_004126989.1 CDS Alide_2367 NC_014910.1 2431944 2433014 D TIGRFAM: lytic murein transglycosylase B; KEGG: dia:Dtpsy_2306 lytic murein transglycosylase B; lytic murein transglycosylase b 2431944..2433014 Alicycliphilus denitrificans BC 10104423 YP_004126990.1 CDS Alide_2368 NC_014910.1 2433024 2434028 R PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: lch:Lcho_4275 transketolase central region; transketolase central region protein complement(2433024..2434028) Alicycliphilus denitrificans BC 10104424 YP_004126991.1 CDS Alide_2369 NC_014910.1 2434043 2434870 R PFAM: Transketolase domain-containing protein; KEGG: dac:Daci_0728 transketolase domain-containing protein; transketolase domain-containing protein complement(2434043..2434870) Alicycliphilus denitrificans BC 10104425 YP_004126992.1 CDS Alide_2370 NC_014910.1 2434893 2436152 R KEGG: pol:Bpro_1457 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM complement(2434893..2436152) Alicycliphilus denitrificans BC 10104426 YP_004126993.1 CDS Alide_2371 NC_014910.1 2436149 2436649 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: lch:Lcho_0406 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter dctq component complement(2436149..2436649) Alicycliphilus denitrificans BC 10104427 YP_004126994.1 CDS Alide_2372 NC_014910.1 2436704 2437687 R KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; trap dicarboxylate transporter subunit DctP complement(2436704..2437687) Alicycliphilus denitrificans BC 10104428 YP_004126995.1 CDS Alide_2373 NC_014910.1 2437724 2438473 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lch:Lcho_0404 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(2437724..2438473) Alicycliphilus denitrificans BC 10104429 YP_004126996.1 CDS Alide_2374 NC_014910.1 2438614 2439492 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_1453 LysR family transcriptional regulator; LysR family transcriptional regulator 2438614..2439492 Alicycliphilus denitrificans BC 10104430 YP_004126997.1 CDS Alide_2375 NC_014910.1 2439645 2441627 D KEGG: hse:Hsero_0506 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; transketolase 2439645..2441627 Alicycliphilus denitrificans BC 10104431 YP_004126998.1 CDS Alide_2376 NC_014910.1 2441642 2442604 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: bxe:Bxe_B0983 2-hydroxyacid dehydrogenase; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 2441642..2442604 Alicycliphilus denitrificans BC 10104432 YP_004126999.1 CDS Alide_2377 NC_014910.1 2442624 2443538 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_2307 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2442624..2443538) Alicycliphilus denitrificans BC 10104433 YP_004127000.1 CDS Alide_2378 NC_014910.1 2443653 2444759 D PFAM: Uncharacterised protein family UPF0324; KEGG: dia:Dtpsy_2308 hypothetical protein; hypothetical protein 2443653..2444759 Alicycliphilus denitrificans BC 10104434 YP_004127001.1 CDS Alide_2379 NC_014910.1 2444761 2446038 R KEGG: dia:Dtpsy_2309 transporter signal peptide protein; branched-chain amino acid ABC transporter substrate-binding protein complement(2444761..2446038) Alicycliphilus denitrificans BC 10104435 YP_004127002.1 CDS Alide_2380 NC_014910.1 2446071 2446850 R PFAM: Protein of unknown function DUF2242; KEGG: dia:Dtpsy_2310 lipoprotein; hypothetical protein complement(2446071..2446850) Alicycliphilus denitrificans BC 10104436 YP_004127003.1 CDS Alide_2381 NC_014910.1 2446996 2448207 R PFAM: protein of unknown function DUF214; KEGG: dia:Dtpsy_2312 protein of unknown function DUF214; hypothetical protein complement(2446996..2448207) Alicycliphilus denitrificans BC 10104437 YP_004127004.1 CDS Alide_2382 NC_014910.1 2448204 2448959 R KEGG: dia:Dtpsy_2313 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2448204..2448959) Alicycliphilus denitrificans BC 10104438 YP_004127005.1 CDS Alide_2383 NC_014910.1 2448956 2450305 R KEGG: dia:Dtpsy_2314 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit complement(2448956..2450305) Alicycliphilus denitrificans BC 10104439 YP_004127006.1 CDS Alide_2384 NC_014910.1 2450302 2451708 R KEGG: dia:Dtpsy_2315 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family complement(2450302..2451708) Alicycliphilus denitrificans BC 10104440 YP_004127007.1 CDS Alide_2385 NC_014910.1 2451831 2452874 R TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: dia:Dtpsy_2317 DNA-binding/iron metalloprotein/AP endonuclease; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase complement(2451831..2452874) Alicycliphilus denitrificans BC 10104441 YP_004127008.1 CDS Alide_2386 NC_014910.1 2452897 2453334 R KEGG: dia:Dtpsy_2323 signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; CBS domain-containing protein complement(2452897..2453334) Alicycliphilus denitrificans BC 10104442 YP_004127009.1 CDS Alide_2387 NC_014910.1 2453419 2454060 R KEGG: dia:Dtpsy_2324 calcium-binding EF-hand-containing protein; calcium-binding ef-hand-containing protein complement(2453419..2454060) Alicycliphilus denitrificans BC 10104443 YP_004127010.1 CDS Alide_2388 NC_014910.1 2454463 2455701 D KEGG: aav:Aave_2112 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 2454463..2455701 Alicycliphilus denitrificans BC 10104444 YP_004127011.1 CDS Alide_2389 NC_014910.1 2455711 2458854 D KEGG: dia:Dtpsy_2326 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 family transporter 2455711..2458854 Alicycliphilus denitrificans BC 10104445 YP_004127012.1 CDS Alide_2390 NC_014910.1 2458851 2460359 D KEGG: dia:Dtpsy_2327 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family 2458851..2460359 Alicycliphilus denitrificans BC 10104446 YP_004127013.1 CDS Alide_2391 NC_014910.1 2460613 2463063 D KEGG: ajs:Ajs_2839 assimilatory nitrite reductase (NAD(P)H) large subunit precursor; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite reductase (nad(p)h), large subunit 2460613..2463063 Alicycliphilus denitrificans BC 10104447 YP_004127014.1 CDS Alide_2392 NC_014910.1 2463136 2463513 D KEGG: ajs:Ajs_2840 assimilatory nitrite reductase (NAD(P)H) small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; nitrite reductase (nad(p)h), small subunit 2463136..2463513 Alicycliphilus denitrificans BC 10104448 YP_004127015.1 CDS Alide_2393 NC_014910.1 2463510 2466302 D PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ajs:Ajs_2841 assimilatory nitrate reductase (NADH) alpha subunit apoprotein; molybdopterin oxidoreductase 2463510..2466302 Alicycliphilus denitrificans BC 10104449 YP_004127016.1 CDS Alide_2394 NC_014910.1 2466353 2467576 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3273 major facilitator transporter; major facilitator superfamily protein 2466353..2467576 Alicycliphilus denitrificans BC 10104450 YP_004127017.1 CDS Alide_2395 NC_014910.1 2467615 2468190 R PFAM: SNARE associated Golgi protein; KEGG: net:Neut_2429 hypothetical protein; hypothetical protein complement(2467615..2468190) Alicycliphilus denitrificans BC 10104451 YP_004127018.1 CDS Alide_2396 NC_014910.1 2468326 2469294 D PFAM: Glycosyl transferase, family 3-like; KEGG: ajs:Ajs_2842 glycosyl transferase family protein; glycosyl transferase, family 3-like protein 2468326..2469294 Alicycliphilus denitrificans BC 10104452 YP_004127019.1 CDS Alide_2397 NC_014910.1 2469291 2470061 D KEGG: dia:Dtpsy_2332 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C-methyltransferase 2469291..2470061 Alicycliphilus denitrificans BC 10104453 YP_004127020.1 CDS Alide_2398 NC_014910.1 2470062 2470565 R PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_2333 thioesterase superfamily protein; thioesterase superfamily protein complement(2470062..2470565) Alicycliphilus denitrificans BC 10104454 YP_004127021.1 CDS Alide_2399 NC_014910.1 2470606 2471880 D PFAM: HI0933 family protein; KEGG: dia:Dtpsy_2335 HI0933 family protein; hi0933 family protein 2470606..2471880 Alicycliphilus denitrificans BC 10104455 YP_004127022.1 CDS Alide_2400 NC_014910.1 2471991 2473205 D PFAM: NnrS family protein; KEGG: ajs:Ajs_2847 NnrS family protein; nnrs family protein 2471991..2473205 Alicycliphilus denitrificans BC 10104456 YP_004127023.1 CDS Alide_2401 NC_014910.1 2473248 2473532 D KEGG: dia:Dtpsy_2337 hypothetical protein; hypothetical protein 2473248..2473532 Alicycliphilus denitrificans BC 10104457 YP_004127024.1 CDS Alide_2402 NC_014910.1 2473602 2474588 R KEGG: reu:Reut_A1607 hypothetical protein; hypothetical protein complement(2473602..2474588) Alicycliphilus denitrificans BC 10104458 YP_004127025.1 CDS Alide_2403 NC_014910.1 2474682 2476184 R PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_C0851 acyl-CoA synthetase; AMP-dependent synthetase/ligase complement(2474682..2476184) Alicycliphilus denitrificans BC 10104459 YP_004127026.1 CDS Alide_2404 NC_014910.1 2476238 2477410 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bxe:Bxe_C0852 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(2476238..2477410) Alicycliphilus denitrificans BC 10104460 YP_004127027.1 CDS Alide_2405 NC_014910.1 2477477 2478451 R KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein complement(2477477..2478451) Alicycliphilus denitrificans BC 10104461 YP_004127028.1 CDS Alide_2406 NC_014910.1 2478529 2479932 R KEGG: bxe:Bxe_C0853 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase complement(2478529..2479932) Alicycliphilus denitrificans BC 10104462 YP_004127029.1 CDS Alide_2407 NC_014910.1 2479943 2481151 R KEGG: bxe:Bxe_C0854 dihydrolipoamide acyltransferase (E2) component of 2-oxoacid dehydrogenase complexes; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; E3 binding domain protein; biotin/lipoyl attachment domain-containing protein; dihydrolipoyllysine-residue acetyltransferase complement(2479943..2481151) Alicycliphilus denitrificans BC 10104463 YP_004127030.1 CDS Alide_2408 NC_014910.1 2481155 2481946 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_C0855 short chain enoyl-CoA hydratase; enoyl-CoA hydratase complement(2481155..2481946) Alicycliphilus denitrificans BC 10104464 YP_004127031.1 CDS Alide_2409 NC_014910.1 2481972 2482952 R PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: bxe:Bxe_C0856 2-oxo acid dehydrogenase beta subunit; transketolase central region protein complement(2481972..2482952) Alicycliphilus denitrificans BC 10104465 YP_004127032.1 CDS Alide_2410 NC_014910.1 2482949 2483950 R KEGG: bxe:Bxe_C0857 2-oxo acid dehydrogenase alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) complement(2482949..2483950) Alicycliphilus denitrificans BC 10104466 YP_004127033.1 CDS Alide_2411 NC_014910.1 2484005 2484403 R PFAM: MaoC domain protein dehydratase; KEGG: bxe:Bxe_C0858 dehydratase; MaoC domain-containing protein complement(2484005..2484403) Alicycliphilus denitrificans BC 10104467 YP_004127034.1 CDS Alide_2412 NC_014910.1 2484400 2484807 R KEGG: bbr:BB4714 hypothetical protein; hypothetical protein complement(2484400..2484807) Alicycliphilus denitrificans BC 10104468 YP_004127035.1 CDS Alide_2413 NC_014910.1 2484804 2485223 R PFAM: protein of unknown function DUF35; KEGG: bxe:Bxe_C0859 hypothetical protein; hypothetical protein complement(2484804..2485223) Alicycliphilus denitrificans BC 10104469 YP_004127036.1 CDS Alide_2414 NC_014910.1 2485225 2486376 R KEGG: bbr:BB4712 hypothetical protein; hypothetical protein complement(2485225..2486376) Alicycliphilus denitrificans BC 10104470 YP_004127037.1 CDS Alide_2415 NC_014910.1 2486387 2487535 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB4710 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(2486387..2487535) Alicycliphilus denitrificans BC 10104471 YP_004127038.1 CDS Alide_2416 NC_014910.1 2487676 2489787 D PFAM: CoA-binding domain protein; KEGG: bbr:BB4708 pimeloyl-CoA synthetase; CoA-binding protein 2487676..2489787 Alicycliphilus denitrificans BC 10104472 YP_004127039.1 CDS Alide_2417 NC_014910.1 2489933 2490727 D KEGG: bxe:Bxe_C0866 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 2489933..2490727 Alicycliphilus denitrificans BC 10104473 YP_004127040.1 CDS Alide_2418 NC_014910.1 2490782 2491336 R KEGG: dia:Dtpsy_2338 FeS assembly SUF system protein SufT; TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59; fes assembly suf system protein suft complement(2490782..2491336) Alicycliphilus denitrificans BC 10104474 YP_004127041.1 CDS Alide_2419 NC_014910.1 2491333 2491797 R KEGG: dia:Dtpsy_2339 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; suf system fes assembly protein, nifu family complement(2491333..2491797) Alicycliphilus denitrificans BC 10104475 YP_004127042.1 CDS Alide_2420 NC_014910.1 2491794 2493074 R KEGG: ajs:Ajs_2851 aminotransferase, class V; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; cysteine desulfurase, sufs subfamily complement(2491794..2493074) Alicycliphilus denitrificans BC 10104476 YP_004127043.1 CDS Alide_2421 NC_014910.1 2493067 2494302 R PFAM: SufBD protein; KEGG: ajs:Ajs_2852 SufBD protein; sufbd protein complement(2493067..2494302) Alicycliphilus denitrificans BC 10104477 YP_004127044.1 CDS Alide_2422 NC_014910.1 2494307 2495080 R TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: dia:Dtpsy_2342 FeS assembly ATPase SufC; SMART: AAA ATPase; fes assembly atpase sufc complement(2494307..2495080) Alicycliphilus denitrificans BC 10104478 YP_004127045.1 CDS Alide_2423 NC_014910.1 2495151 2496653 R KEGG: dia:Dtpsy_2343 cysteine desulfurase activator complex subunit SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; fes assembly protein sufb complement(2495151..2496653) Alicycliphilus denitrificans BC 10104479 YP_004127046.1 CDS Alide_2424 NC_014910.1 2496932 2497144 D KEGG: vap:Vapar_3540 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; 30S ribosomal protein S21 2496932..2497144 Alicycliphilus denitrificans BC 10104480 YP_004127047.1 CDS Alide_2425 NC_014910.1 2497230 2497676 D KEGG: aav:Aave_2091 GatB/YqeY domain-containing protein; gatb/yqey domain-containing protein 2497230..2497676 Alicycliphilus denitrificans BC 10104481 YP_004127048.1 CDS Alide_2426 NC_014910.1 2497690 2499081 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ajs:Ajs_1963 metal dependent phosphohydrolase; metal-dependent phosphohydrolase complement(2497690..2499081) Alicycliphilus denitrificans BC 10104482 YP_004127049.1 CDS Alide_2427 NC_014910.1 2499232 2499870 R TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: dia:Dtpsy_1763 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(2499232..2499870) Alicycliphilus denitrificans BC 10104483 YP_004127050.1 CDS Alide_2428 NC_014910.1 2499874 2500581 R TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: pna:Pnap_2658 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(2499874..2500581) Alicycliphilus denitrificans BC 10104484 YP_004127051.1 CDS Alide_2429 NC_014910.1 2500665 2501210 D TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold domain protein; KEGG: dia:Dtpsy_1761 transcriptional regulator, LuxR family; SMART: regulatory protein LuxR; PAS domain containing protein; pas sensor protein 2500665..2501210 Alicycliphilus denitrificans BC 10104485 YP_004127052.1 CDS Alide_2430 NC_014910.1 2501348 2502589 D PFAM: acyltransferase 3; KEGG: ajs:Ajs_2326 acyltransferase 3; acyltransferase 2501348..2502589 Alicycliphilus denitrificans BC 10104486 YP_004127053.1 CDS Alide_2431 NC_014910.1 2502816 2504162 D KEGG: ajs:Ajs_2327 N-acetylglutamate synthase; TIGRFAM: amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; aspartate/glutamate/uridylate kinase; amino-acid n-acetyltransferase 2502816..2504162 Alicycliphilus denitrificans BC 10104487 YP_004127054.1 CDS Alide_2432 NC_014910.1 2504640 2504987 D PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_3393 endoribonuclease L-PSP; endoribonuclease L-PSP 2504640..2504987 Alicycliphilus denitrificans BC 10104488 YP_004127055.1 CDS Alide_2433 NC_014910.1 2505014 2506258 D KEGG: bam:Bamb_3394 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase 2505014..2506258 Alicycliphilus denitrificans BC 10104489 YP_004127056.1 CDS Alide_2434 NC_014910.1 2506255 2507031 D PFAM: Asp/Glu/hydantoin racemase; KEGG: vei:Veis_4472 Asp/Glu racemase; asp/glu/hydantoin racemase 2506255..2507031 Alicycliphilus denitrificans BC 10104490 YP_004127057.1 CDS Alide_2435 NC_014910.1 2507093 2508226 D PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_4471 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 2507093..2508226 Alicycliphilus denitrificans BC 10104491 YP_004127058.1 CDS Alide_2436 NC_014910.1 2508282 2509175 D PFAM: inner-membrane translocator; KEGG: vei:Veis_4470 inner-membrane translocator; inner-membrane translocator 2508282..2509175 Alicycliphilus denitrificans BC 10104492 YP_004127059.1 CDS Alide_2437 NC_014910.1 2509168 2510055 D PFAM: inner-membrane translocator; KEGG: vei:Veis_4469 inner-membrane translocator; inner-membrane translocator 2509168..2510055 Alicycliphilus denitrificans BC 10104493 YP_004127060.1 CDS Alide_2438 NC_014910.1 2510052 2510834 D KEGG: vei:Veis_4468 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2510052..2510834 Alicycliphilus denitrificans BC 10104494 YP_004127061.1 CDS Alide_2439 NC_014910.1 2510834 2511553 D KEGG: vei:Veis_4467 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2510834..2511553 Alicycliphilus denitrificans BC 10104495 YP_004127062.1 CDS Alide_2440 NC_014910.1 2511577 2512698 D PFAM: Extracellular ligand-binding receptor; KEGG: bcm:Bcenmc03_6241 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 2511577..2512698 Alicycliphilus denitrificans BC 10104496 YP_004127063.1 CDS Alide_2441 NC_014910.1 2512763 2513671 R KEGG: tbd:Tbd_1098 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase complement(2512763..2513671) Alicycliphilus denitrificans BC 10104497 YP_004127064.1 CDS Alide_2442 NC_014910.1 2513790 2517236 R PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: xau:Xaut_0390 indolepyruvate ferredoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase, catalytic domain-containing protein complement(2513790..2517236) Alicycliphilus denitrificans BC 10104498 YP_004127065.1 CDS Alide_2443 NC_014910.1 2517453 2518235 D KEGG: vei:Veis_4063 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2517453..2518235 Alicycliphilus denitrificans BC 10104499 YP_004127066.1 CDS Alide_2444 NC_014910.1 2518263 2519888 R KEGG: dar:Daro_3357 hypothetical protein; PFAM: GAF domain protein; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region; GAF domain-containing protein complement(2518263..2519888) Alicycliphilus denitrificans BC 10104500 YP_004127067.1 CDS Alide_2445 NC_014910.1 2520004 2520513 R PFAM: Disulphide bond formation protein DsbB; KEGG: dia:Dtpsy_1523 disulphide bond formation protein DsbB; disulfide bond formation protein dsbb complement(2520004..2520513) Alicycliphilus denitrificans BC 10104501 YP_004127068.1 CDS Alide_2446 NC_014910.1 2520575 2521702 R TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dia:Dtpsy_1522 sulfate ABC transporter, ATPase subunit; SMART: AAA ATPase; sulfate ABC transporter ATPase subunit complement(2520575..2521702) Alicycliphilus denitrificans BC 10104502 YP_004127069.1 CDS Alide_2447 NC_014910.1 2521737 2522630 R KEGG: ajs:Ajs_2336 sulfate ABC transporter, inner membrane subunit CysW; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter membrane protein CysW complement(2521737..2522630) Alicycliphilus denitrificans BC 10104503 YP_004127070.1 CDS Alide_2448 NC_014910.1 2522627 2523493 R KEGG: dia:Dtpsy_1520 sulfate ABC transporter, inner membrane subunit CysT; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease protein CysT complement(2522627..2523493) Alicycliphilus denitrificans BC 10104504 YP_004127071.1 CDS Alide_2449 NC_014910.1 2523498 2524499 R KEGG: dia:Dtpsy_1519 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; sulfate ABC transporter periplasmic sulfate-binding protein complement(2523498..2524499) Alicycliphilus denitrificans BC 10104505 YP_004127072.1 CDS Alide_2450 NC_014910.1 2524608 2525198 R PFAM: protein of unknown function DUF1234; KEGG: aav:Aave_2544 hypothetical protein; hypothetical protein complement(2524608..2525198) Alicycliphilus denitrificans BC 10104506 YP_004127073.1 CDS Alide_2451 NC_014910.1 2525286 2526203 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1518 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2525286..2526203) Alicycliphilus denitrificans BC 10104507 YP_004127074.1 CDS Alide_2452 NC_014910.1 2526331 2526981 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: dia:Dtpsy_1517 NAD(P)H dehydrogenase (quinone); nad(p)h dehydrogenase (quinone) 2526331..2526981 Alicycliphilus denitrificans BC 10104508 YP_004127075.1 CDS Alide_2453 NC_014910.1 2527039 2527635 R PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_1516 NADPH-dependent FMN reductase; nadph-dependent fmn reductase complement(2527039..2527635) Alicycliphilus denitrificans BC 10104509 YP_004127076.1 CDS Alide_2454 NC_014910.1 2527682 2528482 R KEGG: dia:Dtpsy_1515 lipoprotein, YaeC family; TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; lipoprotein, yaec family complement(2527682..2528482) Alicycliphilus denitrificans BC 10104510 YP_004127077.1 CDS Alide_2455 NC_014910.1 2528588 2529253 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_1513 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2528588..2529253) Alicycliphilus denitrificans BC 10104511 YP_004127078.1 CDS Alide_2456 NC_014910.1 2529253 2530296 R KEGG: dia:Dtpsy_1512 DL-methionine transporter ATP-binding subunit; PFAM: ABC transporter related; NIL domain; SMART: AAA ATPase; ABC transporter complement(2529253..2530296) Alicycliphilus denitrificans BC 10104512 YP_004127079.1 CDS Alide_2457 NC_014910.1 2530405 2530794 R KEGG: ajs:Ajs_2347 membrane protein-like protein; hypothetical protein complement(2530405..2530794) Alicycliphilus denitrificans BC 10104513 YP_004127080.1 CDS Alide_2458 NC_014910.1 2530805 2531395 R TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain-containing protein; Zinc finger C4-type, RecR; KEGG: dia:Dtpsy_1509 recombination protein RecR; SMART: Toprim sub domain-containing protein; recombination protein recr complement(2530805..2531395) Alicycliphilus denitrificans BC 10104514 YP_004127081.1 CDS Alide_2459 NC_014910.1 2531415 2531747 R PFAM: Uncharacterised protein family UPF0133; KEGG: ctt:CtCNB1_1631 hypothetical protein; hypothetical protein complement(2531415..2531747) Alicycliphilus denitrificans BC 10104515 YP_004127082.1 CDS Alide_2460 NC_014910.1 2531779 2533635 R SMART: AAA ATPase; TIGRFAM: DNA polymerase III, subunits gamma and tau; KEGG: dia:Dtpsy_1507 DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; DNA polymerase III subunits gamma/tau complement(2531779..2533635) Alicycliphilus denitrificans BC 10104516 YP_004127083.1 CDS Alide_2461 NC_014910.1 2533818 2534645 R KEGG: cti:RALTA_A0628 transcriptional repressor for molybdate uptake; TIGRFAM: molybdate transport repressor, ModE; PFAM: TOBE domain-containing protein; regulatory protein LysR; molybdate transport repressor, mode complement(2533818..2534645) Alicycliphilus denitrificans BC 10104518 YP_004127084.1 CDS Alide_2462 NC_014910.1 2534682 2535533 R TIGRFAM: modD protein; KEGG: cli:Clim_0375 ModD protein; PFAM: Quinolinate phosphoribosyl transferase; modd protein complement(2534682..2535533) Alicycliphilus denitrificans BC 10104519 YP_004127085.1 CDS Alide_2463 NC_014910.1 2535530 2536192 R KEGG: dac:Daci_3882 binding-protein-dependent transport systems inner membrane component; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit complement(2535530..2536192) Alicycliphilus denitrificans BC 10104520 YP_004127086.1 CDS Alide_2464 NC_014910.1 2536193 2536909 R KEGG: dac:Daci_3883 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; molybdenum ABC transporter periplasmic molybdate-binding protein complement(2536193..2536909) Alicycliphilus denitrificans BC 10104521 YP_004127087.1 CDS Alide_2466 NC_014910.1 2537595 2538683 R KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein; transposase is4 family protein complement(2537595..2538683) Alicycliphilus denitrificans BC 10104523 YP_004127088.1 CDS Alide_2467 NC_014910.1 2539079 2539873 R PFAM: Methyltransferase type 11; KEGG: bpt:Bpet1277 hypothetical protein; type 11 methyltransferase complement(2539079..2539873) Alicycliphilus denitrificans BC 10104524 YP_004127089.1 CDS Alide_2468 NC_014910.1 2539870 2540631 R KEGG: dac:Daci_4650 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2539870..2540631) Alicycliphilus denitrificans BC 10104525 YP_004127090.1 CDS Alide_2469 NC_014910.1 2540628 2541626 R PFAM: transport system permease protein; KEGG: dac:Daci_4649 transport system permease protein; transport system permease complement(2540628..2541626) Alicycliphilus denitrificans BC 10104526 YP_004127091.1 CDS Alide_2470 NC_014910.1 2541685 2542719 R PFAM: periplasmic binding protein; KEGG: dac:Daci_4648 periplasmic binding protein; periplasmic binding protein complement(2541685..2542719) Alicycliphilus denitrificans BC 10104527 YP_004127092.1 CDS Alide_2471 NC_014910.1 2542716 2543255 R PFAM: Protein of unknown function DUF2478; KEGG: bpt:Bpet1276 hypothetical protein; hypothetical protein complement(2542716..2543255) Alicycliphilus denitrificans BC 10104528 YP_004127093.1 CDS Alide_2472 NC_014910.1 2543335 2545314 R PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: ctt:CtCNB1_0594 TonB-dependent receptor; tonb-dependent receptor plug complement(2543335..2545314) Alicycliphilus denitrificans BC 10104529 YP_004127094.1 CDS Alide_2473 NC_014910.1 2545603 2546193 D KEGG: dia:Dtpsy_1506 hypothetical protein; hypothetical protein 2545603..2546193 Alicycliphilus denitrificans BC 10104530 YP_004127095.1 CDS Alide_2474 NC_014910.1 2546175 2547551 R PFAM: HI0933 family protein; KEGG: dia:Dtpsy_1505 HI0933 family protein; hi0933 family protein complement(2546175..2547551) Alicycliphilus denitrificans BC 10104531 YP_004127096.1 CDS Alide_2475 NC_014910.1 2547792 2548676 D PFAM: Pirin domain protein; KEGG: bpe:BP2937 hypothetical protein; pirin 2547792..2548676 Alicycliphilus denitrificans BC 10104532 YP_004127097.1 CDS Alide_2476 NC_014910.1 2548762 2549643 D PFAM: Pirin domain protein; KEGG: pag:PLES_41041 pirin protein; pirin 2548762..2549643 Alicycliphilus denitrificans BC 10104533 YP_004127098.1 CDS Alide_2477 NC_014910.1 2549650 2552937 R PFAM: UvrD/REP helicase; KEGG: dia:Dtpsy_1503 UvrD/REP helicase; UvrD/REP helicase complement(2549650..2552937) Alicycliphilus denitrificans BC 10104534 YP_004127099.1 CDS Alide_2478 NC_014910.1 2552930 2555497 R KEGG: ajs:Ajs_2356 exonuclease-like protein; exonuclease-like protein complement(2552930..2555497) Alicycliphilus denitrificans BC 10104535 YP_004127100.1 CDS Alide_2479 NC_014910.1 2555600 2555932 D KEGG: vap:Vapar_2323 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; thioredoxin 2555600..2555932 Alicycliphilus denitrificans BC 10104536 YP_004127101.1 CDS Alide_2480 NC_014910.1 2556159 2557421 D TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: ajs:Ajs_2358 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase; transcription termination factor rho 2556159..2557421 Alicycliphilus denitrificans BC 10104537 YP_004127102.1 CDS Alide_2481 NC_014910.1 2557508 2557762 D KEGG: dia:Dtpsy_1495 ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; 50S ribosomal protein L31 2557508..2557762 Alicycliphilus denitrificans BC 10104538 YP_004127103.1 CDS Alide_2482 NC_014910.1 2557901 2559595 D KEGG: ajs:Ajs_2364 inner membrane transmembrane protein; inner membrane transmembrane protein 2557901..2559595 Alicycliphilus denitrificans BC 10104539 YP_004127104.1 CDS Alide_2483 NC_014910.1 2559595 2560953 D KEGG: ajs:Ajs_2365 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; mate efflux family protein 2559595..2560953 Alicycliphilus denitrificans BC 10104540 YP_004127105.1 CDS Alide_2484 NC_014910.1 2560916 2562292 R TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: dia:Dtpsy_1492 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; phosphate regulon sensor kinase phor complement(2560916..2562292) Alicycliphilus denitrificans BC 10104541 YP_004127106.1 CDS Alide_2485 NC_014910.1 2562360 2563061 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: ajs:Ajs_2367 two component transcriptional regulator; SMART: response regulator receiver; phosphate regulon transcriptional regulatory protein PhoB complement(2562360..2563061) Alicycliphilus denitrificans BC 10104542 YP_004127107.1 CDS Alide_2486 NC_014910.1 2563058 2563759 R KEGG: ajs:Ajs_2368 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate transport system regulatory protein phou complement(2563058..2563759) Alicycliphilus denitrificans BC 10104543 YP_004127108.1 CDS Alide_2487 NC_014910.1 2563756 2564544 R TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: aav:Aave_2629 phosphate ABC transporter, ATPase subunit; SMART: AAA ATPase; phosphate ABC transporter atpase subunit complement(2563756..2564544) Alicycliphilus denitrificans BC 10104544 YP_004127109.1 CDS Alide_2488 NC_014910.1 2564575 2565456 R KEGG: ajs:Ajs_2370 phosphate transporter permease subunit PtsA; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter membrane protein PstA complement(2564575..2565456) Alicycliphilus denitrificans BC 10104545 YP_004127110.1 CDS Alide_2489 NC_014910.1 2565453 2566475 R KEGG: dia:Dtpsy_1487 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter membrane protein PstC complement(2565453..2566475) Alicycliphilus denitrificans BC 10104546 YP_004127111.1 CDS Alide_2490 NC_014910.1 2566539 2567579 R KEGG: dia:Dtpsy_1486 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; phosphate ABC transporter substrate-binding protein complement(2566539..2567579) Alicycliphilus denitrificans BC 10104547 YP_004127112.1 CDS Alide_2491 NC_014910.1 2567839 2569320 D KEGG: dia:Dtpsy_1483 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 2567839..2569320 Alicycliphilus denitrificans BC 10104548 YP_004127113.1 CDS Alide_2492 NC_014910.1 2569397 2569858 R PFAM: Phosphoglycerate mutase; KEGG: ajs:Ajs_2377 phosphohistidine phosphatase, SixA; phosphoglycerate mutase complement(2569397..2569858) Alicycliphilus denitrificans BC 10104549 YP_004127114.1 CDS Alide_2493 NC_014910.1 2569858 2572032 R TIGRFAM: Polyphosphate kinase; KEGG: dia:Dtpsy_1480 polyphosphate kinase; PFAM: Polyphosphate kinase; polyphosphate kinase complement(2569858..2572032) Alicycliphilus denitrificans BC 10104550 YP_004127115.1 CDS Alide_2494 NC_014910.1 2572295 2573113 R KEGG: dia:Dtpsy_1479 ornithine-acyl(acyl carrier protein) N-acyltransferase; ornithine-acyl(acyl carrier protein) n-acyltransferase complement(2572295..2573113) Alicycliphilus denitrificans BC 10104551 YP_004127116.1 CDS Alide_2495 NC_014910.1 2573353 2575146 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: ajs:Ajs_2380 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase 2573353..2575146 Alicycliphilus denitrificans BC 10104552 YP_004127117.1 CDS Alide_2496 NC_014910.1 2575238 2576572 R KEGG: dia:Dtpsy_1477 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucosamine mutase complement(2575238..2576572) Alicycliphilus denitrificans BC 10104553 YP_004127118.1 CDS Alide_2497 NC_014910.1 2576562 2577458 R TIGRFAM: dihydropteroate synthase; KEGG: ajs:Ajs_2382 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(2576562..2577458) Alicycliphilus denitrificans BC 10104554 YP_004127119.1 CDS Alide_2498 NC_014910.1 2577527 2579488 R SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: dia:Dtpsy_1475 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; ATP-dependent metalloprotease ftsh complement(2577527..2579488) Alicycliphilus denitrificans BC 10104555 YP_004127120.1 CDS Alide_2499 NC_014910.1 2579586 2580248 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dia:Dtpsy_1474 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase rrmj/ftsj complement(2579586..2580248) Alicycliphilus denitrificans BC 10104556 YP_004127121.1 CDS Alide_2500 NC_014910.1 2580269 2580739 D PFAM: protein of unknown function UPF0044; KEGG: dia:Dtpsy_1473 protein of unknown function UPF0044; hypothetical protein 2580269..2580739 Alicycliphilus denitrificans BC 10104557 YP_004127122.1 CDS Alide_2501 NC_014910.1 2580739 2581482 D KEGG: dac:Daci_4928 hypothetical protein; hypothetical protein 2580739..2581482 Alicycliphilus denitrificans BC 10104558 YP_004127123.1 CDS Alide_2502 NC_014910.1 2581483 2581890 R KEGG: ajs:Ajs_2388 hypothetical protein; hypothetical protein complement(2581483..2581890) Alicycliphilus denitrificans BC 10104559 YP_004127124.1 CDS Alide_2503 NC_014910.1 2581893 2582369 R KEGG: dia:Dtpsy_1469 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein; transcription elongation factor grea complement(2581893..2582369) Alicycliphilus denitrificans BC 10104560 YP_004127125.1 CDS Alide_2504 NC_014910.1 2582496 2585747 R KEGG: dia:Dtpsy_1458 carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; carbamoyl-phosphate synthase large subunit complement(2582496..2585747) Alicycliphilus denitrificans BC 10104561 YP_004127126.1 CDS Alide_2505 NC_014910.1 2585747 2586925 R KEGG: aav:Aave_2610 carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; carbamoyl-phosphate synthase small subunit complement(2585747..2586925) Alicycliphilus denitrificans BC 10104562 YP_004127127.1 CDS Alide_2506 NC_014910.1 2587270 2587695 R KEGG: dia:Dtpsy_1455 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; regulatory protein merr complement(2587270..2587695) Alicycliphilus denitrificans BC 10104564 YP_004127128.1 CDS Alide_2507 NC_014910.1 2587795 2588148 R TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: dia:Dtpsy_1454 integration host factor subunit alpha; SMART: histone family protein DNA-binding protein; integration host factor subunit alpha complement(2587795..2588148) Alicycliphilus denitrificans BC 10104565 YP_004127129.1 CDS Alide_2508 NC_014910.1 2588145 2590589 R KEGG: ajs:Ajs_2395 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta complement(2588145..2590589) Alicycliphilus denitrificans BC 10104566 YP_004127130.1 CDS Alide_2509 NC_014910.1 2590713 2591765 R KEGG: dia:Dtpsy_1452 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; phenylalanyl-tRNA synthetase subunit alpha complement(2590713..2591765) Alicycliphilus denitrificans BC 10104567 YP_004127131.1 CDS Alide_2510 NC_014910.1 2591867 2592226 R KEGG: ajs:Ajs_2397 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; 50S ribosomal protein L20 complement(2591867..2592226) Alicycliphilus denitrificans BC 10104568 YP_004127132.1 CDS Alide_2511 NC_014910.1 2592253 2592456 R KEGG: aav:Aave_2857 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; 50S ribosomal protein L35 complement(2592253..2592456) Alicycliphilus denitrificans BC 10104569 YP_004127133.1 CDS Alide_2512 NC_014910.1 2592632 2593156 R KEGG: dia:Dtpsy_1449 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; translation initiation factor if-3 complement(2592632..2593156) Alicycliphilus denitrificans BC 10104570 YP_004127134.1 CDS Alide_2513 NC_014910.1 2593310 2595229 R KEGG: ajs:Ajs_2400 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein; threonyl-tRNA synthetase complement(2593310..2595229) Alicycliphilus denitrificans BC 10104571 YP_004127135.1 CDS Alide_2514 NC_014910.1 2595588 2596499 R PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB4124 enzyme-regulator fusion protein; Gcn5-like N-acetyltransferase complement(2595588..2596499) Alicycliphilus denitrificans BC 10104572 YP_004127136.1 CDS Alide_2516 NC_014910.1 2596920 2598251 R KEGG: dia:Dtpsy_1447 isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; isocitrate lyase complement(2596920..2598251) Alicycliphilus denitrificans BC 10104574 YP_004127137.1 CDS Alide_2517 NC_014910.1 2598517 2599536 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_2402 hypothetical protein; hypothetical protein 2598517..2599536 Alicycliphilus denitrificans BC 10104575 YP_004127138.1 CDS Alide_2518 NC_014910.1 2599693 2599974 D KEGG: dia:Dtpsy_1444 SWIB/MDM2 domain protein; PFAM: SWIB/MDM2 domain-containing protein; SMART: SWIB domain; swib/mdm2 domain-containing protein 2599693..2599974 Alicycliphilus denitrificans BC 10104576 YP_004127139.1 CDS Alide_2519 NC_014910.1 2600169 2600441 D KEGG: dia:Dtpsy_1443 BFD domain protein (2Fe-2S)-binding domain protein; manually curated; PFAM: BFD domain protein [2Fe-2S]-binding domain protein; hypothetical protein 2600169..2600441 Alicycliphilus denitrificans BC 10104577 YP_004127140.1 CDS Alide_2520 NC_014910.1 2600597 2601253 D KEGG: dia:Dtpsy_1442 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain; tonb family protein 2600597..2601253 Alicycliphilus denitrificans BC 10104578 YP_004127141.1 CDS Alide_2521 NC_014910.1 2601269 2601988 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_1441 MotA/TolQ/ExbB proton channel; mota/tolq/exbb proton channel 2601269..2601988 Alicycliphilus denitrificans BC 10104579 YP_004127142.1 CDS Alide_2522 NC_014910.1 2601995 2602405 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2408 biopolymer transport protein ExbD/TolR; biopolymer transport protein exbd/tolr 2601995..2602405 Alicycliphilus denitrificans BC 10104580 YP_004127143.1 CDS Alide_2523 NC_014910.1 2602501 2602728 D PFAM: Hemin uptake protein hemP; KEGG: ajs:Ajs_2409 hypothetical protein; hemin uptake protein hemp 2602501..2602728 Alicycliphilus denitrificans BC 10104581 YP_004127144.1 CDS Alide_2524 NC_014910.1 2602956 2603363 R PFAM: protein of unknown function DUF336; KEGG: dia:Dtpsy_1438 protein of unknown function DUF336; hypothetical protein complement(2602956..2603363) Alicycliphilus denitrificans BC 10104582 YP_004127145.1 CDS Alide_2525 NC_014910.1 2603582 2604271 D PFAM: protein of unknown function UPF0005; KEGG: dia:Dtpsy_1437 protein of unknown function UPF0005; hypothetical protein 2603582..2604271 Alicycliphilus denitrificans BC 10104583 YP_004127146.1 CDS Alide_2526 NC_014910.1 2604390 2604893 D KEGG: rme:Rmet_3623 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; regulatory protein marr 2604390..2604893 Alicycliphilus denitrificans BC 10104584 YP_004127147.1 CDS Alide_2527 NC_014910.1 2604890 2606323 D PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B5563 major facilitator transporter; major facilitator superfamily protein 2604890..2606323 Alicycliphilus denitrificans BC 10104585 YP_004127148.1 CDS Alide_2528 NC_014910.1 2606377 2606760 D KEGG: ajs:Ajs_2412 hypothetical protein; hypothetical protein 2606377..2606760 Alicycliphilus denitrificans BC 10104586 YP_004127149.1 CDS Alide_2529 NC_014910.1 2606793 2607125 R PFAM: small multidrug resistance protein; KEGG: dia:Dtpsy_1617 small multidrug resistance protein; small multidrug resistance protein complement(2606793..2607125) Alicycliphilus denitrificans BC 10104587 YP_004127150.1 CDS Alide_2530 NC_014910.1 2607340 2607930 D PFAM: Chromate transporter; KEGG: dia:Dtpsy_1615 chromate transporter; chromate transporter 2607340..2607930 Alicycliphilus denitrificans BC 10104588 YP_004127151.1 CDS Alide_2531 NC_014910.1 2607933 2608526 D PFAM: Chromate transporter; KEGG: dia:Dtpsy_1614 chromate transporter; chromate transporter 2607933..2608526 Alicycliphilus denitrificans BC 10104589 YP_004127152.1 CDS Alide_2532 NC_014910.1 2608548 2609375 R PFAM: Silent information regulator protein Sir2; KEGG: dia:Dtpsy_1612 silent information regulator protein Sir2; silent information regulator protein sir2 complement(2608548..2609375) Alicycliphilus denitrificans BC 10104590 YP_004127153.1 CDS Alide_2533 NC_014910.1 2609397 2610062 R PFAM: regulatory protein TetR; KEGG: dia:Dtpsy_1611 regulatory protein TetR; regulatory protein tetr complement(2609397..2610062) Alicycliphilus denitrificans BC 10104591 YP_004127154.1 CDS Alide_2534 NC_014910.1 2610146 2610499 D PFAM: protein of unknown function DUF1428; KEGG: dia:Dtpsy_1610 protein of unknown function DUF1428; hypothetical protein 2610146..2610499 Alicycliphilus denitrificans BC 10104592 YP_004127155.1 CDS Alide_2535 NC_014910.1 2610544 2610891 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pol:Bpro_2417 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating gfa 2610544..2610891 Alicycliphilus denitrificans BC 10104593 YP_004127156.1 CDS Alide_2536 NC_014910.1 2610985 2611437 D KEGG: ajs:Ajs_2265 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2610985..2611437 Alicycliphilus denitrificans BC 10104594 YP_004127157.1 CDS Alide_2537 NC_014910.1 2611470 2611916 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: dia:Dtpsy_1608 activator of HSP90 ATPase 1 family protein; activator of hsp90 atpase 1 family protein 2611470..2611916 Alicycliphilus denitrificans BC 10104595 YP_004127158.1 CDS Alide_2538 NC_014910.1 2611952 2612437 D KEGG: gur:Gura_0848 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2611952..2612437 Alicycliphilus denitrificans BC 10104596 YP_004127159.1 CDS Alide_2539 NC_014910.1 2612561 2612944 D KEGG: dac:Daci_4029 hypothetical protein; hypothetical protein 2612561..2612944 Alicycliphilus denitrificans BC 10104597 YP_004127160.1 CDS Alide_2540 NC_014910.1 2612951 2613409 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: dar:Daro_2725 hypothetical protein; activator of hsp90 atpase 1 family protein 2612951..2613409 Alicycliphilus denitrificans BC 10104598 YP_004127161.1 CDS Alide_2541 NC_014910.1 2613416 2614162 R KEGG: dia:Dtpsy_1606 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; RNA methyltransferase, trmh family, group 3 complement(2613416..2614162) Alicycliphilus denitrificans BC 10104599 YP_004127162.1 CDS Alide_2542 NC_014910.1 2614305 2615516 D PFAM: sodium:dicarboxylate symporter; KEGG: dia:Dtpsy_1605 serine/threonine transporter SstT; sodium:dicarboxylate symporter 2614305..2615516 Alicycliphilus denitrificans BC 10104600 YP_004127163.1 CDS Alide_2543 NC_014910.1 2615550 2616272 R KEGG: dia:Dtpsy_1604 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2615550..2616272) Alicycliphilus denitrificans BC 10104601 YP_004127164.1 CDS Alide_2544 NC_014910.1 2616291 2616944 D KEGG: dia:Dtpsy_1603 lipolytic protein G-D-S-L family; PFAM: lipolytic protein G-D-S-L family; arylesterase 2616291..2616944 Alicycliphilus denitrificans BC 10104602 YP_004127165.1 CDS Alide_2545 NC_014910.1 2616958 2617788 R PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: dia:Dtpsy_1602 integral membrane protein; hypothetical protein complement(2616958..2617788) Alicycliphilus denitrificans BC 10104603 YP_004127166.1 CDS Alide_2546 NC_014910.1 2617901 2619130 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: dia:Dtpsy_1601 Cys/Met metabolism pyridoxal-phosphate-dependent protein; cys/met metabolism pyridoxal-phosphate-dependent protein complement(2617901..2619130) Alicycliphilus denitrificans BC 10104604 YP_004127167.1 CDS Alide_2547 NC_014910.1 2619151 2619606 R KEGG: dia:Dtpsy_1600 transport-associated; PFAM: transport-associated; SMART: Transport-associated and nodulation region; transport-associated protein complement(2619151..2619606) Alicycliphilus denitrificans BC 10104605 YP_004127168.1 CDS Alide_2548 NC_014910.1 2619733 2621418 D PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ajs:Ajs_2275 sulphate transporter; sulfate transporter 2619733..2621418 Alicycliphilus denitrificans BC 10104606 YP_004127169.1 CDS Alide_2549 NC_014910.1 2621455 2622228 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dia:Dtpsy_1598 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 2621455..2622228 Alicycliphilus denitrificans BC 10104607 YP_004127170.1 CDS Alide_2550 NC_014910.1 2622239 2623108 D KEGG: dia:Dtpsy_1597 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 2622239..2623108 Alicycliphilus denitrificans BC 10104608 YP_004127171.1 CDS Alide_2551 NC_014910.1 2623179 2625083 R KEGG: dia:Dtpsy_1825 propionyl-CoA synthetase; TIGRFAM: propionate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; propionate/CoA ligase complement(2623179..2625083) Alicycliphilus denitrificans BC 10104609 YP_004127172.1 CDS Alide_2552 NC_014910.1 2625205 2625813 R PFAM: isochorismatase hydrolase; KEGG: dia:Dtpsy_1824 isochorismatase hydrolase; isochorismatase hydrolase complement(2625205..2625813) Alicycliphilus denitrificans BC 10104610 YP_004127173.1 CDS Alide_2553 NC_014910.1 2625877 2626980 R PFAM: NHL repeat containing protein; KEGG: dia:Dtpsy_1823 glucose sorbosone dehydrogenase; nhl repeat containing protein complement(2625877..2626980) Alicycliphilus denitrificans BC 10104611 YP_004127174.1 CDS Alide_2554 NC_014910.1 2627126 2628040 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1814 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2627126..2628040) Alicycliphilus denitrificans BC 10104612 YP_004127175.1 CDS Alide_2555 NC_014910.1 2628171 2629688 D KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase [acylating]; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; methylmalonate-semialdehyde dehydrogenase 2628171..2629688 Alicycliphilus denitrificans BC 10104613 YP_004127176.1 CDS Alide_2556 NC_014910.1 2629685 2630083 D KEGG: ajs:Ajs_2008 hypothetical protein; hypothetical protein 2629685..2630083 Alicycliphilus denitrificans BC 10104614 YP_004127177.1 CDS Alide_2557 NC_014910.1 2630109 2631275 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_2007 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 2630109..2631275 Alicycliphilus denitrificans BC 10104615 YP_004127178.1 CDS Alide_2558 NC_014910.1 2631343 2631729 D KEGG: dia:Dtpsy_1810 hypothetical protein; hypothetical protein 2631343..2631729 Alicycliphilus denitrificans BC 10104616 YP_004127179.1 CDS Alide_2559 NC_014910.1 2631760 2632656 D TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: dia:Dtpsy_1809 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 2631760..2632656 Alicycliphilus denitrificans BC 10104617 YP_004127180.1 CDS Alide_2560 NC_014910.1 2632819 2633652 D TIGRFAM: methyltransferase FkbM family; KEGG: ter:Tery_1754 FkbM family methyltransferase; methyltransferase fkbm family 2632819..2633652 Alicycliphilus denitrificans BC 10104618 YP_004127181.1 CDS Alide_2561 NC_014910.1 2634150 2634539 R KEGG: dia:Dtpsy_1801 hypothetical protein; hypothetical protein complement(2634150..2634539) Alicycliphilus denitrificans BC 10104619 YP_004127182.1 CDS Alide_2562 NC_014910.1 2634677 2635885 D KEGG: dia:Dtpsy_1800 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 2634677..2635885 Alicycliphilus denitrificans BC 10104620 YP_004127183.1 CDS Alide_2563 NC_014910.1 2635913 2636251 D PFAM: protein of unknown function DUF469; KEGG: dia:Dtpsy_1799 protein of unknown function DUF469; hypothetical protein 2635913..2636251 Alicycliphilus denitrificans BC 10104621 YP_004127184.1 CDS Alide_2564 NC_014910.1 2636328 2637908 R TIGRFAM: galactarate dehydratase; KEGG: ajs:Ajs_1998 galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase complement(2636328..2637908) Alicycliphilus denitrificans BC 10104622 YP_004127185.1 CDS Alide_2565 NC_014910.1 2637949 2638947 R KEGG: ajs:Ajs_1997 hypothetical protein; hypothetical protein complement(2637949..2638947) Alicycliphilus denitrificans BC 10104623 YP_004127186.1 CDS Alide_2566 NC_014910.1 2638972 2640267 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ctt:CtCNB1_0239 mandelate racemase/muconate lactonizing; mandelate racemase/muconate lactonizing protein complement(2638972..2640267) Alicycliphilus denitrificans BC 10104624 YP_004127187.1 CDS Alide_2567 NC_014910.1 2640273 2641103 D KEGG: ctt:CtCNB1_0240 GntR-like protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2640273..2641103 Alicycliphilus denitrificans BC 10104625 YP_004127188.1 CDS Alide_2568 NC_014910.1 2641297 2642283 D KEGG: dia:Dtpsy_1794 hypothetical protein; hypothetical protein 2641297..2642283 Alicycliphilus denitrificans BC 10104626 YP_004127189.1 CDS Alide_2569 NC_014910.1 2642355 2643266 D TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: dia:Dtpsy_1793 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; 5-dehydro-4-deoxyglucarate dehydratase 2642355..2643266 Alicycliphilus denitrificans BC 10104627 YP_004127190.1 CDS Alide_2570 NC_014910.1 2643318 2644271 D KEGG: ajs:Ajs_1992 hypothetical protein; hypothetical protein 2643318..2644271 Alicycliphilus denitrificans BC 10104628 YP_004127191.1 CDS Alide_2571 NC_014910.1 2644283 2645275 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ajs:Ajs_1991 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 2644283..2645275 Alicycliphilus denitrificans BC 10104629 YP_004127192.1 CDS Alide_2572 NC_014910.1 2645306 2646643 D KEGG: dia:Dtpsy_1790 glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase 2645306..2646643 Alicycliphilus denitrificans BC 10104630 YP_004127193.1 CDS Alide_2573 NC_014910.1 2646716 2648164 D PFAM: Aldehyde Dehydrogenase; KEGG: ctt:CtCNB1_0246 aldehyde dehydrogenase; aldehyde dehydrogenase 2646716..2648164 Alicycliphilus denitrificans BC 10104631 YP_004127194.1 CDS Alide_2574 NC_014910.1 2648234 2648986 D TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: dia:Dtpsy_1788 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 2648234..2648986 Alicycliphilus denitrificans BC 10104632 YP_004127195.1 CDS Alide_2575 NC_014910.1 2648983 2649726 D PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: dia:Dtpsy_1787 arginyl-tRNA-protein transferase; arginine-tRNA-protein transferase domain-containing protein 2648983..2649726 Alicycliphilus denitrificans BC 10104633 YP_004127196.1 CDS Alide_2576 NC_014910.1 2649799 2650500 R PFAM: Pirin domain protein; KEGG: ajs:Ajs_1985 pirin domain-containing protein; pirin complement(2649799..2650500) Alicycliphilus denitrificans BC 10104634 YP_004127197.1 CDS Alide_2577 NC_014910.1 2650612 2651547 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1784 transcriptional regulator, LysR family; LysR family transcriptional regulator 2650612..2651547 Alicycliphilus denitrificans BC 10104635 YP_004127198.1 CDS Alide_2578 NC_014910.1 2651622 2652716 D PFAM: amine oxidase; KEGG: ajs:Ajs_1983 FAD dependent oxidoreductase; amine oxidase 2651622..2652716 Alicycliphilus denitrificans BC 10104636 YP_004127199.1 CDS Alide_2579 NC_014910.1 2652713 2653678 D KEGG: ajs:Ajs_1982 glutamate--tRNA ligase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamate--tRNA ligase 2652713..2653678 Alicycliphilus denitrificans BC 10104637 YP_004127200.1 CDS Alide_2580 NC_014910.1 2653636 2654409 D KEGG: dia:Dtpsy_1781 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-n(7)-)-methyltransferase 2653636..2654409 Alicycliphilus denitrificans BC 10104638 YP_004127201.1 CDS Alide_2581 NC_014910.1 2654438 2655442 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dia:Dtpsy_1780 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 2654438..2655442 Alicycliphilus denitrificans BC 10104639 YP_004127202.1 CDS Alide_2582 NC_014910.1 2655493 2658114 R KEGG: dia:Dtpsy_1779 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; alanyl-tRNA synthetase complement(2655493..2658114) Alicycliphilus denitrificans BC 10104640 YP_004127203.1 CDS Alide_2583 NC_014910.1 2658334 2659248 D PFAM: dihydrodipicolinate synthetase; KEGG: vap:Vapar_5222 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 2658334..2659248 Alicycliphilus denitrificans BC 10104641 YP_004127204.1 CDS Alide_2584 NC_014910.1 2659269 2659904 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ctt:CtCNB1_4596 tripartite ATP-independent periplasmic; tripartite ATP-independent periplasmic transporter dctq component 2659269..2659904 Alicycliphilus denitrificans BC 10104642 YP_004127205.1 CDS Alide_2585 NC_014910.1 2659922 2661187 D KEGG: ctt:CtCNB1_4595 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM 2659922..2661187 Alicycliphilus denitrificans BC 10104643 YP_004127206.1 CDS Alide_2586 NC_014910.1 2661213 2662199 D PFAM: Extracellular solute-binding protein, family 7; KEGG: ctt:CtCNB1_4594 TRAP dicarboxylate transporter, DctP subunit; ABC transporter substrate-binding protein 2661213..2662199 Alicycliphilus denitrificans BC 10104644 YP_004127207.1 CDS Alide_2587 NC_014910.1 2662257 2663291 D PFAM: Malate/L-lactate dehydrogenase; KEGG: bpd:BURPS668_A0565 malate/L-lactate dehydrogenase family protein; malate/l-lactate dehydrogenase 2662257..2663291 Alicycliphilus denitrificans BC 10104645 YP_004127208.1 CDS Alide_2588 NC_014910.1 2663366 2664040 D KEGG: vap:Vapar_5216 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2663366..2664040 Alicycliphilus denitrificans BC 10104646 YP_004127209.1 CDS Alide_2589 NC_014910.1 2664064 2665014 D PFAM: pseudouridine synthase; KEGG: dia:Dtpsy_1777 pseudouridine synthase; pseudouridine synthase 2664064..2665014 Alicycliphilus denitrificans BC 10104647 YP_004127210.1 CDS Alide_2590 NC_014910.1 2664989 2667694 R PFAM: GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_1832 GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase complement(2664989..2667694) Alicycliphilus denitrificans BC 10104648 YP_004127211.1 CDS Alide_2591 NC_014910.1 2667741 2669084 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; KEGG: dia:Dtpsy_1831 3-deoxy-D-manno-octulosonic-acid transferase domain protein; three-deoxy-d-manno-octulosonic-acid transferase domain-containing protein complement(2667741..2669084) Alicycliphilus denitrificans BC 10104649 YP_004127212.1 CDS Alide_2592 NC_014910.1 2669105 2670493 R KEGG: dia:Dtpsy_1830 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase complement(2669105..2670493) Alicycliphilus denitrificans BC 10104650 YP_004127213.1 CDS Alide_2593 NC_014910.1 2670562 2671533 R KEGG: dac:Daci_0982 hypothetical protein; hypothetical protein complement(2670562..2671533) Alicycliphilus denitrificans BC 10104651 YP_004127214.1 CDS Alide_2594 NC_014910.1 2671546 2672520 R KEGG: vei:Veis_0062 hypothetical protein; hypothetical protein complement(2671546..2672520) Alicycliphilus denitrificans BC 10104652 YP_004127215.1 CDS Alide_2595 NC_014910.1 2672615 2673421 R KEGG: rsc:RCFBP_20182 myo-inositol catabolism protein, protein IolB; myo-inositol catabolism protein, protein iolb complement(2672615..2673421) Alicycliphilus denitrificans BC 10104653 YP_004127216.1 CDS Alide_2596 NC_014910.1 2673418 2675373 R PFAM: Protein of unknown function DUF2090; PfkB domain protein; KEGG: dac:Daci_0985 ribokinase-like domain-containing protein; hypothetical protein complement(2673418..2675373) Alicycliphilus denitrificans BC 10104654 YP_004127217.1 CDS Alide_2597 NC_014910.1 2675468 2676340 D PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: dac:Daci_0986 RpiR family transcriptional regulator; sugar isomerase (sis) 2675468..2676340 Alicycliphilus denitrificans BC 10104655 YP_004127218.1 CDS Alide_2598 NC_014910.1 2676402 2677901 D KEGG: ajs:Ajs_2020 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada; PFAM: AlkA domain protein; Ada metal-binding domain-containing protein; helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; SMART: Helix-turn-helix, AraC domain; HhH-GPD family protein; AlkA domain-containing protein 2676402..2677901 Alicycliphilus denitrificans BC 10104656 YP_004127219.1 CDS Alide_2599 NC_014910.1 2677960 2678487 D KEGG: dia:Dtpsy_1828 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 2677960..2678487 Alicycliphilus denitrificans BC 10104657 YP_004127220.1 CDS Alide_2600 NC_014910.1 2678484 2679407 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dia:Dtpsy_1827 protein of unknown function DUF6 transmembrane; hypothetical protein 2678484..2679407 Alicycliphilus denitrificans BC 10104658 YP_004127221.1 CDS Alide_2601 NC_014910.1 2679427 2680389 R KEGG: aav:Aave_3080 adenylate/guanylate cyclase; PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Forkhead-associated protein; forkhead-associated protein complement(2679427..2680389) Alicycliphilus denitrificans BC 10104659 YP_004127222.1 CDS Alide_2602 NC_014910.1 2680595 2681566 R KEGG: dia:Dtpsy_1593 muramoyltetrapeptide carboxypeptidase; PFAM: peptidase U61 LD-carboxypeptidase A; muramoyltetrapeptide carboxypeptidase complement(2680595..2681566) Alicycliphilus denitrificans BC 10104660 YP_004127223.1 CDS Alide_2603 NC_014910.1 2681550 2682626 R PFAM: CMP/dCMP deaminase zinc-binding; alpha/beta hydrolase fold; KEGG: ajs:Ajs_2282 CMP/dCMP deaminase, zinc-binding; cmp/dcmp deaminase zinc-binding protein complement(2681550..2682626) Alicycliphilus denitrificans BC 10104661 YP_004127224.1 CDS Alide_2604 NC_014910.1 2682674 2683306 R PFAM: Negative transcriptional regulator; KEGG: vap:Vapar_2794 FMN-binding negative transcriptional regulator; negative transcriptional regulator complement(2682674..2683306) Alicycliphilus denitrificans BC 10104662 YP_004127225.1 CDS Alide_2605 NC_014910.1 2683359 2685332 D PFAM: peptidase U32; KEGG: dia:Dtpsy_1589 peptidase U32; peptidase u32 2683359..2685332 Alicycliphilus denitrificans BC 10104663 YP_004127226.1 CDS Alide_2606 NC_014910.1 2685418 2686695 D TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: dia:Dtpsy_1588 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; o-acetylhomoserine/o-acetylserine sulfhydrylase 2685418..2686695 Alicycliphilus denitrificans BC 10104664 YP_004127227.1 CDS Alide_2607 NC_014910.1 2686745 2688040 R PFAM: protein of unknown function DUF323; KEGG: dia:Dtpsy_1587 protein of unknown function DUF323; hypothetical protein complement(2686745..2688040) Alicycliphilus denitrificans BC 10104665 YP_004127228.1 CDS Alide_2608 NC_014910.1 2688054 2689028 R KEGG: dia:Dtpsy_1586 methyltransferase; TIGRFAM: methyltransferase; PFAM: Protein of unknown function DUF2260; methyltransferase complement(2688054..2689028) Alicycliphilus denitrificans BC 10104666 YP_004127229.1 CDS Alide_2609 NC_014910.1 2689278 2689868 R KEGG: dia:Dtpsy_1585 OmpW family protein; manually curated; PFAM: OmpW family protein; ompw family protein complement(2689278..2689868) Alicycliphilus denitrificans BC 10104667 YP_004127230.1 CDS Alide_2610 NC_014910.1 2690013 2691005 R PFAM: protein of unknown function DUF808; KEGG: ajs:Ajs_2290 hypothetical protein; hypothetical protein complement(2690013..2691005) Alicycliphilus denitrificans BC 10104668 YP_004127231.1 CDS Alide_2611 NC_014910.1 2691109 2695128 R TIGRFAM: phosphoribosylformylglycinamidine synthase; KEGG: dia:Dtpsy_1582 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine synthase complement(2691109..2695128) Alicycliphilus denitrificans BC 10104669 YP_004127232.1 CDS Alide_2612 NC_014910.1 2695309 2696127 D KEGG: dia:Dtpsy_1581 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 2695309..2696127 Alicycliphilus denitrificans BC 10104670 YP_004127233.1 CDS Alide_2613 NC_014910.1 2696175 2698799 D SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: dia:Dtpsy_1580 PII uridylyl-transferase; PFAM: GlnD PII-uridylyltransferase; protein of unknown function DUF294 nucleotidyltransferase; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; protein-p-ii uridylyltransferase 2696175..2698799 Alicycliphilus denitrificans BC 10104671 YP_004127234.1 CDS Alide_2614 NC_014910.1 2698809 2700287 R KEGG: ctt:CtCNB1_3177 uracil-xanthine permease; TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; xanthine permease complement(2698809..2700287) Alicycliphilus denitrificans BC 10104672 YP_004127235.1 CDS Alide_2615 NC_014910.1 2700519 2701058 R TIGRFAM: peptide deformylase; KEGG: dac:Daci_4855 peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(2700519..2701058) Alicycliphilus denitrificans BC 10104673 YP_004127236.1 CDS Alide_2616 NC_014910.1 2701152 2701571 D PFAM: protein of unknown function DUF454; KEGG: ajs:Ajs_2296 hypothetical protein; hypothetical protein 2701152..2701571 Alicycliphilus denitrificans BC 10104674 YP_004127237.1 CDS Alide_2618 NC_014910.1 2702405 2702731 D KEGG: pzu:PHZ_c2127 hypothetical protein; hypothetical protein 2702405..2702731 Alicycliphilus denitrificans BC 10104678 YP_004127238.1 CDS Alide_2619 NC_014910.1 2702733 2703335 D KEGG: pzu:PHZ_c2128 hypothetical protein; hypothetical protein 2702733..2703335 Alicycliphilus denitrificans BC 10104679 YP_004127239.1 CDS Alide_2620 NC_014910.1 2703620 2704879 R KEGG: aav:Aave_2572 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase, nADP-dependent complement(2703620..2704879) Alicycliphilus denitrificans BC 10104680 YP_004127240.1 CDS Alide_2621 NC_014910.1 2705402 2705875 D PFAM: protein of unknown function DUF192; KEGG: dia:Dtpsy_1560 protein of unknown function DUF192; hypothetical protein 2705402..2705875 Alicycliphilus denitrificans BC 10104681 YP_004127241.1 CDS Alide_2622 NC_014910.1 2705945 2708182 R TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: ajs:Ajs_2300 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase, nADP-dependent complement(2705945..2708182) Alicycliphilus denitrificans BC 10104682 YP_004127242.1 CDS Alide_2623 NC_014910.1 2708482 2709063 R KEGG: ajs:Ajs_2301 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; superoxide dismutase complement(2708482..2709063) Alicycliphilus denitrificans BC 10104683 YP_004127243.1 CDS Alide_2624 NC_014910.1 2709206 2710543 R TIGRFAM: exodeoxyribonuclease VII, large subunit; KEGG: ajs:Ajs_2302 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit complement(2709206..2710543) Alicycliphilus denitrificans BC 10104684 YP_004127244.1 CDS Alide_2625 NC_014910.1 2710906 2711544 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_1556 MotA/TolQ/ExbB proton channel; mota/tolq/exbb proton channel 2710906..2711544 Alicycliphilus denitrificans BC 10104685 YP_004127245.1 CDS Alide_2626 NC_014910.1 2711552 2711977 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dia:Dtpsy_1555 biopolymer transport protein ExbD/TolR; biopolymer transport protein exbd/tolr 2711552..2711977 Alicycliphilus denitrificans BC 10104686 YP_004127246.1 CDS Alide_2627 NC_014910.1 2711982 2712980 D TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: ajs:Ajs_2305 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2711982..2712980 Alicycliphilus denitrificans BC 10104687 YP_004127247.1 CDS Alide_2628 NC_014910.1 2712994 2713176 D PFAM: protein of unknown function DUF343; KEGG: dia:Dtpsy_1553 protein of unknown function DUF343; hypothetical protein 2712994..2713176 Alicycliphilus denitrificans BC 10104688 YP_004127248.1 CDS Alide_2629 NC_014910.1 2713173 2713958 D TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: ajs:Ajs_2307 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 2713173..2713958 Alicycliphilus denitrificans BC 10104689 YP_004127249.1 CDS Alide_2630 NC_014910.1 2714057 2714713 D KEGG: dia:Dtpsy_1551 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain-containing protein; adenylate kinase 2714057..2714713 Alicycliphilus denitrificans BC 10104690 YP_004127250.1 CDS Alide_2631 NC_014910.1 2714786 2715748 R KEGG: dia:Dtpsy_1550 asparaginase; PFAM: Asparaginase/glutaminase; asparaginase complement(2714786..2715748) Alicycliphilus denitrificans BC 10104691 YP_004127251.1 CDS Alide_2632 NC_014910.1 2715828 2716502 D KEGG: dia:Dtpsy_1549 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; Peptidase S24/S26A/S26B, conserved region; lexa repressor 2715828..2716502 Alicycliphilus denitrificans BC 10104692 YP_004127252.1 CDS Alide_2633 NC_014910.1 2716657 2717001 D KEGG: ajs:Ajs_2311 hypothetical protein; hypothetical protein 2716657..2717001 Alicycliphilus denitrificans BC 10104693 YP_004127253.1 CDS Alide_2634 NC_014910.1 2717009 2720989 R TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; helicase domain protein; protein of unknown function DUF1605; KEGG: dia:Dtpsy_1546 ATP-dependent helicase HrpA; SMART: DEAD-like helicase ; AAA ATPase; helicase domain protein; ATP-dependent helicase hrpa complement(2717009..2720989) Alicycliphilus denitrificans BC 10104694 YP_004127254.1 CDS Alide_2635 NC_014910.1 2721045 2722238 R TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ajs:Ajs_2317 acetyl-CoA acetyltransferases; PFAM: Thiolase-like; acetyl-CoA acetyltransferase complement(2721045..2722238) Alicycliphilus denitrificans BC 10104695 YP_004127255.1 CDS Alide_2636 NC_014910.1 2722235 2723704 R PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_1541 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(2722235..2723704) Alicycliphilus denitrificans BC 10104696 YP_004127256.1 CDS Alide_2637 NC_014910.1 2723707 2724291 R PFAM: BioY protein; KEGG: dia:Dtpsy_1540 BioY protein; bioy protein complement(2723707..2724291) Alicycliphilus denitrificans BC 10104697 YP_004127257.1 CDS Alide_2638 NC_014910.1 2724329 2724922 R PFAM: cobalt transport protein; KEGG: ajs:Ajs_2320 cobalt transport protein; cobalt transport protein complement(2724329..2724922) Alicycliphilus denitrificans BC 10104698 YP_004127258.1 CDS Alide_2639 NC_014910.1 2724941 2725714 R KEGG: dia:Dtpsy_1538 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2724941..2725714) Alicycliphilus denitrificans BC 10104699 YP_004127259.1 CDS Alide_2640 NC_014910.1 2726145 2726723 D KEGG: bte:BTH_II1296 hypothetical protein; hypothetical protein 2726145..2726723 Alicycliphilus denitrificans BC 10104700 YP_004127260.1 CDS Alide_2641 NC_014910.1 2726770 2727204 D KEGG: gdj:Gdia_1658 hypothetical protein; hypothetical protein 2726770..2727204 Alicycliphilus denitrificans BC 10104701 YP_004127261.1 CDS Alide_2642 NC_014910.1 2727258 2727674 D TIGRFAM: lactoylglutathione lyase; KEGG: dia:Dtpsy_1870 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2727258..2727674 Alicycliphilus denitrificans BC 10104702 YP_004127262.1 CDS Alide_2643 NC_014910.1 2727738 2729261 R PFAM: GTP-binding protein HSR1-related; KEGG: bpt:Bpet1383 hypothetical protein; GTP-binding protein hsr1-like protein complement(2727738..2729261) Alicycliphilus denitrificans BC 10104703 YP_004127263.1 CDS Alide_2644 NC_014910.1 2729258 2730520 R KEGG: bpt:Bpet1384 hypothetical protein; hypothetical protein complement(2729258..2730520) Alicycliphilus denitrificans BC 10104704 YP_004127264.1 CDS Alide_2645 NC_014910.1 2730523 2731869 R PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet1386 N-hydroxybenzoate transporter; major facilitator superfamily protein complement(2730523..2731869) Alicycliphilus denitrificans BC 10104705 YP_004127265.1 CDS Alide_2646 NC_014910.1 2731901 2732881 R KEGG: dia:Dtpsy_0161 hypothetical protein; hypothetical protein complement(2731901..2732881) Alicycliphilus denitrificans BC 10104706 YP_004127266.1 CDS Alide_2647 NC_014910.1 2732929 2733207 R TIGRFAM: muconolactone delta-isomerase; KEGG: bpt:Bpet1390 methylmuconolactone isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase complement(2732929..2733207) Alicycliphilus denitrificans BC 10104707 YP_004127267.1 CDS Alide_2648 NC_014910.1 2733228 2734031 R KEGG: bpt:Bpet1391 3-oxoadipate enol-lactone hydrolase; TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; 3-oxoadipate enol-lactonase complement(2733228..2734031) Alicycliphilus denitrificans BC 10104708 YP_004127268.1 CDS Alide_2649 NC_014910.1 2734043 2734816 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bpt:Bpet1396 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; short-chain dehydrogenase/reductase sdr complement(2734043..2734816) Alicycliphilus denitrificans BC 10104709 YP_004127269.1 CDS Alide_2650 NC_014910.1 2734839 2735774 R KEGG: bpt:Bpet1400 catechol 1,2-dioxygenase; TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; catechol 1,2-dioxygenase complement(2734839..2735774) Alicycliphilus denitrificans BC 10104710 YP_004127270.1 CDS Alide_2651 NC_014910.1 2735818 2736993 R KEGG: bpt:Bpet1401 chloromuconate cycloisomerase; TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; muconate and chloromuconate cycloisomerase complement(2735818..2736993) Alicycliphilus denitrificans BC 10104711 YP_004127271.1 CDS Alide_2652 NC_014910.1 2737108 2738058 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet1402 transcriptional regulator CatR; LysR family transcriptional regulator 2737108..2738058 Alicycliphilus denitrificans BC 10104712 YP_004127272.1 CDS Alide_2653 NC_014910.1 2738123 2738761 R TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: ajs:Ajs_2048 2-keto-3-deoxy-phosphogluconate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase complement(2738123..2738761) Alicycliphilus denitrificans BC 10104713 YP_004127273.1 CDS Alide_2654 NC_014910.1 2738752 2740569 R TIGRFAM: 6-phosphogluconate dehydratase; KEGG: ajs:Ajs_2049 phosphogluconate dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; 6-phosphogluconate dehydratase complement(2738752..2740569) Alicycliphilus denitrificans BC 10104714 YP_004127274.1 CDS Alide_2655 NC_014910.1 2740696 2741706 R KEGG: dia:Dtpsy_1873 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; trap dicarboxylate transporter subunit DctP complement(2740696..2741706) Alicycliphilus denitrificans BC 10104715 YP_004127275.1 CDS Alide_2656 NC_014910.1 2741763 2743043 R KEGG: dia:Dtpsy_1874 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM complement(2741763..2743043) Alicycliphilus denitrificans BC 10104716 YP_004127276.1 CDS Alide_2657 NC_014910.1 2743054 2743575 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dia:Dtpsy_1875 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter dctq component complement(2743054..2743575) Alicycliphilus denitrificans BC 10104717 YP_004127277.1 CDS Alide_2658 NC_014910.1 2743572 2744126 R PFAM: shikimate kinase; manually curated; KEGG: ajs:Ajs_2053 carbohydrate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; thermoresistant glucokinase family carbohydrate kinase complement(2743572..2744126) Alicycliphilus denitrificans BC 10104718 YP_004127278.1 CDS Alide_2659 NC_014910.1 2744331 2745356 D KEGG: ajs:Ajs_2054 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; periplasmic-binding protein/LacI transcriptional regulator 2744331..2745356 Alicycliphilus denitrificans BC 10104719 YP_004127279.1 CDS Alide_2660 NC_014910.1 2745402 2747750 R TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: dia:Dtpsy_1896 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpA complement(2745402..2747750) Alicycliphilus denitrificans BC 10104720 YP_004127280.1 CDS Alide_2661 NC_014910.1 2747810 2748172 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dia:Dtpsy_1897 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent clp protease adaptor protein clps complement(2747810..2748172) Alicycliphilus denitrificans BC 10104721 YP_004127281.1 CDS Alide_2662 NC_014910.1 2748232 2751780 R SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dia:Dtpsy_1898 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III subunit alpha complement(2748232..2751780) Alicycliphilus denitrificans BC 10104722 YP_004127282.1 CDS Alide_2663 NC_014910.1 2751909 2752706 D TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dia:Dtpsy_1899 outer membrane assembly lipoprotein YfiO; outer membrane assembly lipoprotein yfio 2751909..2752706 Alicycliphilus denitrificans BC 10104723 YP_004127283.1 CDS Alide_2664 NC_014910.1 2752669 2754741 R SMART: helicase c2; KEGG: ajs:Ajs_1828 helicase C2; helicase c2 complement(2752669..2754741) Alicycliphilus denitrificans BC 10104724 YP_004127284.1 CDS Alide_2665 NC_014910.1 2754859 2755662 D SMART: protein phosphatase 2C domain protein; KEGG: dia:Dtpsy_1901 protein serine/threonine phosphatase; protein phosphatase 2C 2754859..2755662 Alicycliphilus denitrificans BC 10104725 YP_004127285.1 CDS Alide_2666 NC_014910.1 2755666 2756361 R KEGG: ajs:Ajs_1826 hypothetical protein; hypothetical protein complement(2755666..2756361) Alicycliphilus denitrificans BC 10104726 YP_004127286.1 CDS Alide_2667 NC_014910.1 2756358 2757455 R PFAM: AFG1-family ATPase; KEGG: dia:Dtpsy_1903 AFG1-family ATPase; afg1-family atpase complement(2756358..2757455) Alicycliphilus denitrificans BC 10104727 YP_004127287.1 CDS Alide_2668 NC_014910.1 2757532 2758959 R KEGG: ajs:Ajs_1824 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase complement(2757532..2758959) Alicycliphilus denitrificans BC 10104728 YP_004127288.1 CDS Alide_2669 NC_014910.1 2759045 2760301 R KEGG: dia:Dtpsy_1905 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; 2-oxoglutarate dehydrogenase E2 complement(2759045..2760301) Alicycliphilus denitrificans BC 10104729 YP_004127289.1 CDS Alide_2670 NC_014910.1 2760354 2763230 R TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; KEGG: ajs:Ajs_1822 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component; 2-oxoglutarate dehydrogenase E1 complement(2760354..2763230) Alicycliphilus denitrificans BC 10104730 YP_004127290.1 CDS Alide_2671 NC_014910.1 2763436 2764494 D PFAM: protein of unknown function UPF0118; KEGG: dia:Dtpsy_1907 protein of unknown function UPF0118; hypothetical protein 2763436..2764494 Alicycliphilus denitrificans BC 10104731 YP_004127291.1 CDS Alide_2672 NC_014910.1 2764562 2765545 R KEGG: dia:Dtpsy_1908 hypothetical protein; hypothetical protein complement(2764562..2765545) Alicycliphilus denitrificans BC 10104732 YP_004127292.1 CDS Alide_2673 NC_014910.1 2765596 2765958 R KEGG: dia:Dtpsy_1909 hypothetical protein; hypothetical protein complement(2765596..2765958) Alicycliphilus denitrificans BC 10104733 YP_004127293.1 CDS Alide_2674 NC_014910.1 2765973 2767325 R PFAM: protein of unknown function DUF1446; KEGG: dia:Dtpsy_1910 protein of unknown function DUF1446; hypothetical protein complement(2765973..2767325) Alicycliphilus denitrificans BC 10104734 YP_004127294.1 CDS Alide_2675 NC_014910.1 2767418 2768323 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_1817 LysR family transcriptional regulator; LysR family transcriptional regulator 2767418..2768323 Alicycliphilus denitrificans BC 10104735 YP_004127295.1 CDS Alide_2676 NC_014910.1 2768461 2769327 D PFAM: UspA domain-containing protein; KEGG: ajs:Ajs_1816 UspA domain-containing protein; uspa domain-containing protein 2768461..2769327 Alicycliphilus denitrificans BC 10104736 YP_004127296.1 CDS Alide_2677 NC_014910.1 2769347 2770984 R KEGG: dia:Dtpsy_1915 ABC transporter related; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; ABC transporter complement(2769347..2770984) Alicycliphilus denitrificans BC 10104737 YP_004127297.1 CDS Alide_2678 NC_014910.1 2770986 2772026 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_1916 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2770986..2772026) Alicycliphilus denitrificans BC 10104738 YP_004127298.1 CDS Alide_2679 NC_014910.1 2772010 2773047 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1811 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2772010..2773047) Alicycliphilus denitrificans BC 10104739 YP_004127299.1 CDS Alide_2680 NC_014910.1 2773065 2773526 R KEGG: dia:Dtpsy_2487 protein-S-isoprenylcysteine methyltransferase-like protein; protein-S-isoprenylcysteine methyltransferase complement(2773065..2773526) Alicycliphilus denitrificans BC 10104740 YP_004127300.1 CDS Alide_2681 NC_014910.1 2773572 2775395 R PFAM: extracellular solute-binding protein family 5; KEGG: dia:Dtpsy_1918 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein complement(2773572..2775395) Alicycliphilus denitrificans BC 10104741 YP_004127301.1 CDS Alide_2682 NC_014910.1 2775441 2776241 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1919 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 2775441..2776241 Alicycliphilus denitrificans BC 10104742 YP_004127302.1 CDS Alide_2683 NC_014910.1 2776337 2777245 D KEGG: rsc:RCFBP_10755 multidrug resistance efflux transporter; multidrug resistance efflux transporter 2776337..2777245 Alicycliphilus denitrificans BC 10104743 YP_004127303.1 CDS Alide_2684 NC_014910.1 2777301 2777525 R PFAM: protein of unknown function DUF465; KEGG: cvi:CV_3311 hypothetical protein; hypothetical protein complement(2777301..2777525) Alicycliphilus denitrificans BC 10104744 YP_004127304.1 CDS Alide_2685 NC_014910.1 2777674 2778588 D KEGG: dia:Dtpsy_2251 DNA ligase; PFAM: ATP dependent DNA ligase; DNA ligase (ATP) 2777674..2778588 Alicycliphilus denitrificans BC 10104745 YP_004127305.1 CDS Alide_2686 NC_014910.1 2778763 2779512 D PFAM: Integral membrane protein TerC; KEGG: aav:Aave_4673 integral membrane protein TerC; integral membrane protein TerC 2778763..2779512 Alicycliphilus denitrificans BC 10104746 YP_004127306.1 CDS Alide_2687 NC_014910.1 2779573 2781933 R KEGG: ajs:Ajs_2762 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; lysine decarboxylase complement(2779573..2781933) Alicycliphilus denitrificans BC 10104747 YP_004127307.1 CDS Alide_2688 NC_014910.1 2782082 2782513 D KEGG: dia:Dtpsy_2253 hypothetical protein; hypothetical protein 2782082..2782513 Alicycliphilus denitrificans BC 10104748 YP_004127308.1 CDS Alide_2689 NC_014910.1 2782583 2783500 D KEGG: dia:Dtpsy_2254 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; hypothetical protein 2782583..2783500 Alicycliphilus denitrificans BC 10104749 YP_004127309.1 CDS Alide_2690 NC_014910.1 2783497 2784399 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rfr:Rfer_0879 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2783497..2784399) Alicycliphilus denitrificans BC 10104750 YP_004127310.1 CDS Alide_2691 NC_014910.1 2784592 2786316 D PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: ajs:Ajs_2520 thiamine pyrophosphate protein; thiamine pyrophosphate tpp-binding domain-containing protein 2784592..2786316 Alicycliphilus denitrificans BC 10104751 YP_004127311.1 CDS Alide_2692 NC_014910.1 2786959 2787291 D PFAM: protein of unknown function UPF0060; KEGG: psa:PST_2099 inner membrane lipoprotein; hypothetical protein 2786959..2787291 Alicycliphilus denitrificans BC 10104753 YP_004127312.1 CDS Alide_2693 NC_014910.1 2787452 2788075 D PFAM: integrase family protein; KEGG: mpt:Mpe_A1729 phage integrase family protein; integrase family protein 2787452..2788075 Alicycliphilus denitrificans BC 10104754 YP_004127313.1 CDS Alide_2694 NC_014910.1 2788342 2789073 D KEGG: bch:Bcen2424_3197 NADPH-dependent FMN reductase; TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; arsenical resistance protein arsh 2788342..2789073 Alicycliphilus denitrificans BC 10104755 YP_004127314.1 CDS Alide_2695 NC_014910.1 2789090 2791894 D KEGG: pol:Bpro_1191 ATPase, E1-E2 type; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; ATPase P 2789090..2791894 Alicycliphilus denitrificans BC 10104756 YP_004127315.1 CDS Alide_2696 NC_014910.1 2791936 2792454 D KEGG: pna:Pnap_2845 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 family RNA polymerase sigma factor 2791936..2792454 Alicycliphilus denitrificans BC 10104757 YP_004127316.1 CDS Alide_2697 NC_014910.1 2792526 2792726 D KEGG: shi:Shel_20950 haloacid dehalogenase superfamily enzyme, subfamily IA; hypothetical protein 2792526..2792726 Alicycliphilus denitrificans BC 10104758 YP_004127317.1 CDS Alide_2698 NC_014910.1 2792730 2793785 D PFAM: permease; KEGG: app:CAP2UW1_2749 permease; permease 2792730..2793785 Alicycliphilus denitrificans BC 10104759 YP_004127318.1 CDS Alide_2699 NC_014910.1 2793820 2794053 D KEGG: reu:Reut_B4599 thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase and thioredoxin 2793820..2794053 Alicycliphilus denitrificans BC 10104760 YP_004127319.1 CDS Alide_2700 NC_014910.1 2794050 2794487 D PFAM: OsmC family protein; KEGG: psa:PST_0230 redox protein, regulator of disulfide bond formation; osmc family protein 2794050..2794487 Alicycliphilus denitrificans BC 10104761 YP_004127320.1 CDS Alide_2701 NC_014910.1 2794484 2795377 D KEGG: rfr:Rfer_3644 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 2794484..2795377 Alicycliphilus denitrificans BC 10104762 YP_004127321.1 CDS Alide_2702 NC_014910.1 2795378 2796661 D KEGG: rfr:Rfer_3651 hypothetical protein; hypothetical protein 2795378..2796661 Alicycliphilus denitrificans BC 10104763 YP_004127322.1 CDS Alide_2703 NC_014910.1 2796670 2797731 D PFAM: glutamine amidotransferase class-II; KEGG: pol:Bpro_1189 glutamine amidotransferase, class-II; glutamine amidotransferase class-ii 2796670..2797731 Alicycliphilus denitrificans BC 10104764 YP_004127323.1 CDS Alide_2704 NC_014910.1 2797824 2798912 D PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: nis:NIS_0087 hypothetical protein; oxidoreductase FAD-binding domain-containing protein 2797824..2798912 Alicycliphilus denitrificans BC 10104765 YP_004127324.1 CDS Alide_2705 NC_014910.1 2798930 2800114 D TIGRFAM: acetyl-CoA acetyltransferase; KEGG: aeh:Mlg_2706 acetyl-CoA acetyltransferases; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 2798930..2800114 Alicycliphilus denitrificans BC 10104766 YP_004127325.1 CDS Alide_2706 NC_014910.1 2800126 2800359 D KEGG: eba:ebA4129 hypothetical protein; hypothetical protein 2800126..2800359 Alicycliphilus denitrificans BC 10104767 YP_004127326.1 CDS Alide_2707 NC_014910.1 2800366 2800605 R KEGG: lch:Lcho_1324 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(2800366..2800605) Alicycliphilus denitrificans BC 10104768 YP_004127327.1 CDS Alide_2708 NC_014910.1 2800637 2802082 R PFAM: permease; KEGG: lch:Lcho_1323 permease; permease complement(2800637..2802082) Alicycliphilus denitrificans BC 10104769 YP_004127328.1 CDS Alide_2709 NC_014910.1 2802549 2803547 R manually curated; KEGG: ava:Ava_4263 hypothetical protein; hypothetical protein complement(2802549..2803547) Alicycliphilus denitrificans BC 10104770 YP_004127329.1 CDS Alide_2710 NC_014910.1 2803827 2804381 R manually curated; KEGG: eum:ECUMN_2307 hypothetical protein; hypothetical protein complement(2803827..2804381) Alicycliphilus denitrificans BC 10104771 YP_004127330.1 CDS Alide_2711 NC_014910.1 2804418 2805332 R PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein complement(2804418..2805332) Alicycliphilus denitrificans BC 10104772 YP_004127331.1 CDS Alide_2712 NC_014910.1 2805329 2805652 R PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein complement(2805329..2805652) Alicycliphilus denitrificans BC 10104773 YP_004127332.1 CDS Alide_2714 NC_014910.1 2806679 2808694 R TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; KEGG: ajs:Ajs_2233 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; DNA topoisomerase iii complement(2806679..2808694) Alicycliphilus denitrificans BC 10104774 YP_004127333.1 CDS Alide_2715 NC_014910.1 2808984 2809367 R PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein; single-strand binding protein/primosomal replication protein n complement(2808984..2809367) Alicycliphilus denitrificans BC 10104775 YP_004127334.1 CDS Alide_2716 NC_014910.1 2809364 2809909 R KEGG: rpf:Rpic12D_0642 hypothetical protein; hypothetical protein complement(2809364..2809909) Alicycliphilus denitrificans BC 10104776 YP_004127335.1 CDS Alide_2717 NC_014910.1 2809906 2810691 R KEGG: rpf:Rpic12D_0641 hypothetical protein; TIGRFAM: Domain of unknown function DUF1845; PFAM: Domain of unknown function DUF1845; hypothetical protein complement(2809906..2810691) Alicycliphilus denitrificans BC 10104777 YP_004127336.1 CDS Alide_2718 NC_014910.1 2810921 2812153 R KEGG: rpf:Rpic12D_0640 hypothetical protein; hypothetical protein complement(2810921..2812153) Alicycliphilus denitrificans BC 10104778 YP_004127337.1 CDS Alide_2719 NC_014910.1 2812157 2812717 R KEGG: rpf:Rpic12D_0639 hypothetical protein; hypothetical protein complement(2812157..2812717) Alicycliphilus denitrificans BC 10104779 YP_004127338.1 CDS Alide_2720 NC_014910.1 2812730 2814403 R KEGG: rpf:Rpic12D_0638 hypothetical protein; hypothetical protein complement(2812730..2814403) Alicycliphilus denitrificans BC 10104780 YP_004127339.1 CDS Alide_2721 NC_014910.1 2814396 2814653 R KEGG: rpf:Rpic12D_0637 hypothetical protein; hypothetical protein complement(2814396..2814653) Alicycliphilus denitrificans BC 10104781 YP_004127340.1 CDS Alide_2722 NC_014910.1 2814637 2815503 R KEGG: rpf:Rpic12D_0636 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase complement(2814637..2815503) Alicycliphilus denitrificans BC 10104782 YP_004127341.1 CDS Alide_2723 NC_014910.1 2815544 2815762 R PFAM: Prophage CP4-57 regulatory; KEGG: tmz:Tmz1t_1000 phage transcriptional regulator, AlpA; prophage cp4-57 regulatory complement(2815544..2815762) Alicycliphilus denitrificans BC 10104783 YP_004127342.1 CDS Alide_2724 NC_014910.1 2815887 2816645 R KEGG: tmz:Tmz1t_1001 hypothetical protein; hypothetical protein complement(2815887..2816645) Alicycliphilus denitrificans BC 10104784 YP_004127343.1 CDS Alide_2725 NC_014910.1 2817208 2818104 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpf:Rpic12D_0633 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2817208..2818104) Alicycliphilus denitrificans BC 10104785 YP_004127344.1 CDS Alide_2726 NC_014910.1 2818591 2821710 R KEGG: ajs:Ajs_1232 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, czca family complement(2818591..2821710) Alicycliphilus denitrificans BC 10104786 YP_004127345.1 CDS Alide_2727 NC_014910.1 2821707 2823191 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: lch:Lcho_2049 RND family efflux transporter MFP subunit; efflux transporter, rnd family, mfp subunit complement(2821707..2823191) Alicycliphilus denitrificans BC 10104787 YP_004127346.1 CDS Alide_2728 NC_014910.1 2823206 2824522 R KEGG: lch:Lcho_2050 CzcC family heavy metal RND efflux outer membrane protein; czcc family heavy metal rnd efflux outer membrane protein complement(2823206..2824522) Alicycliphilus denitrificans BC 10104788 YP_004127347.1 CDS Alide_2729 NC_014910.1 2824598 2825134 R KEGG: lch:Lcho_2051 hypothetical protein; hypothetical protein complement(2824598..2825134) Alicycliphilus denitrificans BC 10104789 YP_004127348.1 CDS Alide_2730 NC_014910.1 2825178 2825435 R KEGG: maq:Maqu_0130 hypothetical protein; hypothetical protein complement(2825178..2825435) Alicycliphilus denitrificans BC 10104790 YP_004127349.1 CDS Alide_2731 NC_014910.1 2825474 2827816 R KEGG: dia:Dtpsy_2191 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase complement(2825474..2827816) Alicycliphilus denitrificans BC 10104791 YP_004127350.1 CDS Alide_2732 NC_014910.1 2827953 2829815 R KEGG: ajs:Ajs_2709 hypothetical protein; hypothetical protein complement(2827953..2829815) Alicycliphilus denitrificans BC 10104792 YP_004127351.1 CDS Alide_2733 NC_014910.1 2829925 2830428 R PFAM: cytochrome c class I; KEGG: dia:Dtpsy_2192 cytochrome c class I; cytochrome c class i complement(2829925..2830428) Alicycliphilus denitrificans BC 10104793 YP_004127352.1 CDS Alide_2734 NC_014910.1 2830484 2831131 R KEGG: dia:Dtpsy_2193 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase complement(2830484..2831131) Alicycliphilus denitrificans BC 10104794 YP_004127353.1 CDS Alide_2735 NC_014910.1 2831136 2831414 R KEGG: dia:Dtpsy_2194 hypothetical protein; hypothetical protein complement(2831136..2831414) Alicycliphilus denitrificans BC 10104795 YP_004127354.1 CDS Alide_2736 NC_014910.1 2831425 2831895 R KEGG: dia:Dtpsy_2195 hypothetical protein; hypothetical protein complement(2831425..2831895) Alicycliphilus denitrificans BC 10104796 YP_004127355.1 CDS Alide_2737 NC_014910.1 2831971 2832312 R KEGG: ajs:Ajs_2667 hypothetical protein; hypothetical protein complement(2831971..2832312) Alicycliphilus denitrificans BC 10104797 YP_004127356.1 CDS Alide_2738 NC_014910.1 2832367 2832873 R PFAM: blue (type 1) copper domain protein; KEGG: net:Neut_0023 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein complement(2832367..2832873) Alicycliphilus denitrificans BC 10104798 YP_004127357.1 CDS Alide_2739 NC_014910.1 2832896 2833774 R PFAM: copper resistance B precursor; KEGG: bmj:BMULJ_00902 copper resistance protein B; copper resistance b precursor complement(2832896..2833774) Alicycliphilus denitrificans BC 10104799 YP_004127358.1 CDS Alide_2740 NC_014910.1 2834101 2835960 R KEGG: bmj:BMULJ_00903 copper resistance transmembrane protein; TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; copper-resistance protein, copa family complement(2834101..2835960) Alicycliphilus denitrificans BC 10104800 YP_004127359.1 CDS Alide_2741 NC_014910.1 2836085 2836768 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: dia:Dtpsy_2201 two component heavy metal response transcriptional regulator, winged helix family; SMART: response regulator receiver; heavy metal response regulator 2836085..2836768 Alicycliphilus denitrificans BC 10104801 YP_004127360.1 CDS Alide_2742 NC_014910.1 2836769 2838172 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_2726 heavy metal sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; heavy metal sensor kinase 2836769..2838172 Alicycliphilus denitrificans BC 10104802 YP_004127361.1 CDS Alide_2743 NC_014910.1 2838304 2838651 D KEGG: ajs:Ajs_2662 hypothetical protein; hypothetical protein 2838304..2838651 Alicycliphilus denitrificans BC 10104803 YP_004127362.1 CDS Alide_2744 NC_014910.1 2838807 2838920 D KEGG: vap:Vapar_3675 protein of unknown function DUF411; hypothetical protein 2838807..2838920 Alicycliphilus denitrificans BC 10104804 YP_004127363.1 CDS Alide_2745 NC_014910.1 2839094 2840773 D KEGG: net:Neut_0014 twin-arginine translocation pathway signal; PFAM: multicopper oxidase type 3; multicopper oxidase type 2; bilirubin oxidase 2839094..2840773 Alicycliphilus denitrificans BC 10104805 YP_004127364.1 CDS Alide_2746 NC_014910.1 2840858 2841181 D PFAM: transposase IS3/IS911 family protein; KEGG: aav:Aave_4117 transposase IS3/IS911 family protein; transposase is3/is911 family protein 2840858..2841181 Alicycliphilus denitrificans BC 10104806 YP_004127365.1 CDS Alide_2747 NC_014910.1 2841181 2842119 D PFAM: Integrase catalytic region; KEGG: aav:Aave_4118 integrase catalytic subunit; integrase catalytic region protein 2841181..2842119 Alicycliphilus denitrificans BC 10104807 YP_004127366.1 CDS Alide_2748 NC_014910.1 2842258 2842500 D KEGG: aca:ACP_0600 hypothetical protein; hypothetical protein 2842258..2842500 Alicycliphilus denitrificans BC 10104808 YP_004127367.1 CDS Alide_2749 NC_014910.1 2842529 2843599 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4649 hypothetical protein; hypothetical protein complement(2842529..2843599) Alicycliphilus denitrificans BC 10104809 YP_004127368.1 CDS Alide_2750 NC_014910.1 2843641 2845644 R manually curated; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: xau:Xaut_4952 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase complement(2843641..2845644) Alicycliphilus denitrificans BC 10104810 YP_004127369.1 CDS Alide_2751 NC_014910.1 2845705 2845983 R PFAM: protein of unknown function DUF156; KEGG: pde:Pden_3352 hypothetical protein; hypothetical protein complement(2845705..2845983) Alicycliphilus denitrificans BC 10104811 YP_004127370.1 CDS Alide_2752 NC_014910.1 2846141 2847049 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpf:Rpic12D_0613 transcriptional regulator, LysR family; LysR family transcriptional regulator 2846141..2847049 Alicycliphilus denitrificans BC 10104812 YP_004127371.1 CDS Alide_2753 NC_014910.1 2847307 2847789 R KEGG: pol:Bpro_5021 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein complement(2847307..2847789) Alicycliphilus denitrificans BC 10104813 YP_004127372.1 CDS Alide_2754 NC_014910.1 2847887 2848222 R KEGG: pol:Bpro_4958 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(2847887..2848222) Alicycliphilus denitrificans BC 10104814 YP_004127373.1 CDS Alide_2755 NC_014910.1 2848397 2848534 D KEGG: abb:ABBFA_001155 transcriptional regulatory protein QseB; transcriptional regulator QseB 2848397..2848534 Alicycliphilus denitrificans BC 10104815 YP_004127374.1 CDS Alide_2756 NC_014910.1 2848668 2848808 D hypothetical protein 2848668..2848808 Alicycliphilus denitrificans BC 10104816 YP_004127375.1 CDS Alide_2757 NC_014910.1 2848877 2849878 D KEGG: dia:Dtpsy_0973 hypothetical protein; hypothetical protein 2848877..2849878 Alicycliphilus denitrificans BC 10104817 YP_004127376.1 CDS Alide_2758 NC_014910.1 2849895 2850851 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_2361 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2849895..2850851) Alicycliphilus denitrificans BC 10104818 YP_004127377.1 CDS Alide_2759 NC_014910.1 2850892 2851983 D TIGRFAM: tartrate dehydrogenase; KEGG: aav:Aave_2087 tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 2850892..2851983 Alicycliphilus denitrificans BC 10104819 YP_004127378.1 CDS Alide_2760 NC_014910.1 2852155 2853174 D PFAM: Patatin; KEGG: dac:Daci_3706 patatin; patatin 2852155..2853174 Alicycliphilus denitrificans BC 10104820 YP_004127379.1 CDS Alide_2761 NC_014910.1 2853176 2854138 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_2084 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2853176..2854138) Alicycliphilus denitrificans BC 10104821 YP_004127380.1 CDS Alide_2762 NC_014910.1 2854238 2855227 D KEGG: ctt:CtCNB1_3468 TctC; hypothetical protein 2854238..2855227 Alicycliphilus denitrificans BC 10104822 YP_004127381.1 CDS Alide_2763 NC_014910.1 2855224 2856747 D KEGG: ctt:CtCNB1_3469 outer membrane protein precursor; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase 2855224..2856747 Alicycliphilus denitrificans BC 10104823 YP_004127382.1 CDS Alide_2764 NC_014910.1 2856814 2858283 D KEGG: dac:Daci_2346 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; succinate-semialdehyde dehydrogenase 2856814..2858283 Alicycliphilus denitrificans BC 10104824 YP_004127383.1 CDS Alide_2765 NC_014910.1 2858290 2859093 D KEGG: ctt:CtCNB1_3471 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 4-hydroxy-2-oxovalerate aldolase 2858290..2859093 Alicycliphilus denitrificans BC 10104825 YP_004127384.1 CDS Alide_2766 NC_014910.1 2859294 2859917 D PFAM: protein of unknown function DUF938; KEGG: dia:Dtpsy_2352 protein of unknown function DUF938; hypothetical protein 2859294..2859917 Alicycliphilus denitrificans BC 10104826 YP_004127385.1 CDS Alide_2767 NC_014910.1 2859958 2860821 D TIGRFAM: glutamate racemase; KEGG: ajs:Ajs_2867 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 2859958..2860821 Alicycliphilus denitrificans BC 10104827 YP_004127386.1 CDS Alide_2768 NC_014910.1 2860818 2861639 R KEGG: aav:Aave_2959 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase; n-formylglutamate amidohydrolase complement(2860818..2861639) Alicycliphilus denitrificans BC 10104828 YP_004127387.1 CDS Alide_2769 NC_014910.1 2861668 2863101 R KEGG: dac:Daci_0155 N-formimino-L-glutamate deiminase; TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; formiminoglutamate deiminase complement(2861668..2863101) Alicycliphilus denitrificans BC 10104829 YP_004127388.1 CDS Alide_2770 NC_014910.1 2863106 2864344 R TIGRFAM: imidazolonepropionase; KEGG: pol:Bpro_1035 imidazolonepropionase; PFAM: amidohydrolase; imidazolonepropionase complement(2863106..2864344) Alicycliphilus denitrificans BC 10104830 YP_004127389.1 CDS Alide_2771 NC_014910.1 2864670 2865272 R PFAM: protein of unknown function DUF886; KEGG: aav:Aave_2962 hypothetical protein; hypothetical protein complement(2864670..2865272) Alicycliphilus denitrificans BC 10104831 YP_004127390.1 CDS Alide_2772 NC_014910.1 2865278 2866060 R KEGG: pol:Bpro_1038 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2865278..2866060) Alicycliphilus denitrificans BC 10104832 YP_004127391.1 CDS Alide_2773 NC_014910.1 2866057 2866725 R KEGG: pol:Bpro_1039 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(2866057..2866725) Alicycliphilus denitrificans BC 10104833 YP_004127392.1 CDS Alide_2774 NC_014910.1 2866740 2867495 R KEGG: pol:Bpro_1040 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; ABC transporter substrate-binding protein complement(2866740..2867495) Alicycliphilus denitrificans BC 10104834 YP_004127393.1 CDS Alide_2775 NC_014910.1 2867539 2868318 R KEGG: pol:Bpro_1041 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr complement(2867539..2868318) Alicycliphilus denitrificans BC 10104835 YP_004127394.1 CDS Alide_2776 NC_014910.1 2868407 2870128 R TIGRFAM: urocanate hydratase; KEGG: dac:Daci_0150 urocanate hydratase; PFAM: Urocanase; urocanate hydratase complement(2868407..2870128) Alicycliphilus denitrificans BC 10104836 YP_004127395.1 CDS Alide_2777 NC_014910.1 2870172 2871650 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: ctt:CtCNB1_0166 cytosine/purines/uracil permease; cytosine/purines uracil thiamine allantoin permease complement(2870172..2871650) Alicycliphilus denitrificans BC 10104837 YP_004127396.1 CDS Alide_2778 NC_014910.1 2871793 2872518 D TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; KEGG: ctt:CtCNB1_0165 transcriptional regulator, histidine; SMART: regulatory protein GntR HTH; histidine utilization repressor 2871793..2872518 Alicycliphilus denitrificans BC 10104838 YP_004127397.1 CDS Alide_2779 NC_014910.1 2872519 2874108 R TIGRFAM: histidine ammonia-lyase; KEGG: aav:Aave_2965 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; histidine ammonia-lyase complement(2872519..2874108) Alicycliphilus denitrificans BC 10104839 YP_004127398.1 CDS Alide_2780 NC_014910.1 2874172 2874954 R TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; KEGG: aav:Aave_2966 histidine utilization repressor; SMART: regulatory protein GntR HTH; histidine utilization repressor complement(2874172..2874954) Alicycliphilus denitrificans BC 10104840 YP_004127399.1 CDS Alide_2781 NC_014910.1 2874971 2875753 R KEGG: aav:Aave_2967 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2874971..2875753) Alicycliphilus denitrificans BC 10104841 YP_004127400.1 CDS Alide_2782 NC_014910.1 2875753 2876592 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_2968 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2875753..2876592) Alicycliphilus denitrificans BC 10104842 YP_004127401.1 CDS Alide_2783 NC_014910.1 2876618 2877583 R KEGG: aav:Aave_2969 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(2876618..2877583) Alicycliphilus denitrificans BC 10104843 YP_004127402.1 CDS Alide_2784 NC_014910.1 2877791 2878948 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_0142 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase complement(2877791..2878948) Alicycliphilus denitrificans BC 10104844 YP_004127403.1 CDS Alide_2785 NC_014910.1 2878987 2880198 R KEGG: dac:Daci_0143 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase complement(2878987..2880198) Alicycliphilus denitrificans BC 10104845 YP_004127404.1 CDS Alide_2786 NC_014910.1 2880290 2881216 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_0157 L-carnitine dehydratase/bile acid-inducible; LysR family transcriptional regulator 2880290..2881216 Alicycliphilus denitrificans BC 10104846 YP_004127405.1 CDS Alide_2787 NC_014910.1 2881244 2882227 R KEGG: ajs:Ajs_2869 hypothetical protein; hypothetical protein complement(2881244..2882227) Alicycliphilus denitrificans BC 10104847 YP_004127406.1 CDS Alide_2788 NC_014910.1 2882272 2883261 R KEGG: dia:Dtpsy_2357 hypothetical protein; hypothetical protein complement(2882272..2883261) Alicycliphilus denitrificans BC 10104848 YP_004127407.1 CDS Alide_2789 NC_014910.1 2883304 2884275 R PFAM: pyruvate carboxyltransferase; KEGG: dia:Dtpsy_2358 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(2883304..2884275) Alicycliphilus denitrificans BC 10104849 YP_004127408.1 CDS Alide_2790 NC_014910.1 2884272 2885477 R KEGG: dia:Dtpsy_2359 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase complement(2884272..2885477) Alicycliphilus denitrificans BC 10104850 YP_004127409.1 CDS Alide_2791 NC_014910.1 2885605 2886507 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_2873 LysR family transcriptional regulator; LysR family transcriptional regulator 2885605..2886507 Alicycliphilus denitrificans BC 10104851 YP_004127410.1 CDS Alide_2792 NC_014910.1 2886504 2887586 D KEGG: ajs:Ajs_2874 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP015557; PFAM: Uncharacterised conserved protein UCP015557; hypothetical protein 2886504..2887586 Alicycliphilus denitrificans BC 10104852 YP_004127411.1 CDS Alide_2793 NC_014910.1 2887746 2888300 D KEGG: dia:Dtpsy_2362 elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein; translation elongation factor p 2887746..2888300 Alicycliphilus denitrificans BC 10104853 YP_004127412.1 CDS Alide_2794 NC_014910.1 2888374 2888832 R KEGG: ajs:Ajs_2876 hypothetical protein; hypothetical protein complement(2888374..2888832) Alicycliphilus denitrificans BC 10104854 YP_004127413.1 CDS Alide_2795 NC_014910.1 2888953 2891037 R KEGG: dia:Dtpsy_2364 calcium-binding EF-hand-containing protein; TIGRFAM: sodium symporter protein; PFAM: Na+/solute symporter; sodium symporter protein complement(2888953..2891037) Alicycliphilus denitrificans BC 10104855 YP_004127414.1 CDS Alide_2796 NC_014910.1 2891030 2891347 R TIGRFAM: solute symporter protein; KEGG: ajs:Ajs_2878 hypothetical protein; solute symporter protein complement(2891030..2891347) Alicycliphilus denitrificans BC 10104856 YP_004127415.1 CDS Alide_2797 NC_014910.1 2891364 2893754 R KEGG: dia:Dtpsy_2366 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; phosphoenolpyruvate synthase complement(2891364..2893754) Alicycliphilus denitrificans BC 10104857 YP_004127416.1 CDS Alide_2798 NC_014910.1 2893977 2894807 D PFAM: protein of unknown function DUF299; KEGG: dia:Dtpsy_2367 hypothetical protein; hypothetical protein 2893977..2894807 Alicycliphilus denitrificans BC 10104858 YP_004127417.1 CDS Alide_2799 NC_014910.1 2894841 2897960 R KEGG: tmz:Tmz1t_2382 heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, czca family complement(2894841..2897960) Alicycliphilus denitrificans BC 10104859 YP_004127418.1 CDS Alide_2800 NC_014910.1 2897974 2899086 R KEGG: ajs:Ajs_1330 hypothetical protein; hypothetical protein complement(2897974..2899086) Alicycliphilus denitrificans BC 10104860 YP_004127419.1 CDS Alide_2801 NC_014910.1 2899083 2899628 R KEGG: dia:Dtpsy_1144 hypothetical protein; hypothetical protein complement(2899083..2899628) Alicycliphilus denitrificans BC 10104861 YP_004127420.1 CDS Alide_2802 NC_014910.1 2899736 2901004 R PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_1332 outer membrane efflux protein; outer membrane efflux protein complement(2899736..2901004) Alicycliphilus denitrificans BC 10104862 YP_004127421.1 CDS Alide_2803 NC_014910.1 2901186 2901563 R KEGG: mpt:Mpe_A2670 hypothetical protein; hypothetical protein complement(2901186..2901563) Alicycliphilus denitrificans BC 10104863 YP_004127422.1 CDS Alide_2804 NC_014910.1 2901619 2903076 R KEGG: meh:M301_0051 catalase; PFAM: Catalase related subgroup; Catalase domain protein; catalase complement(2901619..2903076) Alicycliphilus denitrificans BC 10104864 YP_004127423.1 CDS Alide_2805 NC_014910.1 2903145 2904713 R KEGG: aav:Aave_1376 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; alkyl hydroperoxide reductase complement(2903145..2904713) Alicycliphilus denitrificans BC 10104865 YP_004127424.1 CDS Alide_2806 NC_014910.1 2904809 2905384 R TIGRFAM: peroxiredoxin; KEGG: aav:Aave_1375 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; peroxiredoxin complement(2904809..2905384) Alicycliphilus denitrificans BC 10104866 YP_004127425.1 CDS Alide_2807 NC_014910.1 2905600 2906076 D KEGG: dia:Dtpsy_2370 bacterioferritin; TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; bacterioferritin 2905600..2906076 Alicycliphilus denitrificans BC 10104867 YP_004127426.1 CDS Alide_2808 NC_014910.1 2906303 2906632 D PFAM: flagellar transcriptional activator; KEGG: ajs:Ajs_2884 flagellar transcriptional activator, FlhD subunit; flagellar transcriptional activator 2906303..2906632 Alicycliphilus denitrificans BC 10104868 YP_004127427.1 CDS Alide_2809 NC_014910.1 2906669 2907208 D PFAM: flagellar transcriptional activator FlhC; KEGG: ajs:Ajs_2885 transcriptional activator FlhC; flagellar transcriptional activator flhc 2906669..2907208 Alicycliphilus denitrificans BC 10104869 YP_004127428.1 CDS Alide_2810 NC_014910.1 2907241 2910084 R KEGG: dia:Dtpsy_2376 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase, C-terminal region; phosphoenolpyruvate carboxylase complement(2907241..2910084) Alicycliphilus denitrificans BC 10104870 YP_004127429.1 CDS Alide_2811 NC_014910.1 2910204 2911133 D TIGRFAM: porphobilinogen deaminase; KEGG: dia:Dtpsy_2377 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 2910204..2911133 Alicycliphilus denitrificans BC 10104871 YP_004127430.1 CDS Alide_2812 NC_014910.1 2911127 2911951 D KEGG: ajs:Ajs_2891 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 2911127..2911951 Alicycliphilus denitrificans BC 10104872 YP_004127431.1 CDS Alide_2813 NC_014910.1 2911941 2913020 D PFAM: protein of unknown function DUF513 hemX; KEGG: ajs:Ajs_2892 protein of unknown function DUF513, HemX; hypothetical protein 2911941..2913020 Alicycliphilus denitrificans BC 10104873 YP_004127432.1 CDS Alide_2814 NC_014910.1 2913046 2914335 D PFAM: HemY domain protein; KEGG: ajs:Ajs_2893 HemY domain-containing protein; HemY domain-containing protein 2913046..2914335 Alicycliphilus denitrificans BC 10104874 YP_004127433.1 CDS Alide_2815 NC_014910.1 2914589 2916244 D KEGG: net:Neut_1582 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome-c oxidase 2914589..2916244 Alicycliphilus denitrificans BC 10104875 YP_004127434.1 CDS Alide_2816 NC_014910.1 2916234 2916881 D PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: net:Neut_1583 cytochrome c oxidase, mono-heme subunit/FixO; cytochrome c oxidase mono-heme subunit/fixo 2916234..2916881 Alicycliphilus denitrificans BC 10104876 YP_004127435.1 CDS Alide_2817 NC_014910.1 2916895 2917488 D PFAM: cytochrome c class I; KEGG: net:Neut_1584 cytochrome c, class I; cytochrome c class i 2916895..2917488 Alicycliphilus denitrificans BC 10104877 YP_004127436.1 CDS Alide_2818 NC_014910.1 2917496 2918131 D KEGG: net:Neut_1585 hypothetical protein; hypothetical protein 2917496..2918131 Alicycliphilus denitrificans BC 10104878 YP_004127437.1 CDS Alide_2819 NC_014910.1 2918128 2918733 D KEGG: pol:Bpro_1263 hypothetical protein; hypothetical protein 2918128..2918733 Alicycliphilus denitrificans BC 10104879 YP_004127438.1 CDS Alide_2820 NC_014910.1 2918879 2921767 D KEGG: dia:Dtpsy_2382 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; valyl-tRNA synthetase 2918879..2921767 Alicycliphilus denitrificans BC 10104880 YP_004127439.1 CDS Alide_2821 NC_014910.1 2921875 2922759 D KEGG: dia:Dtpsy_2383 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 2921875..2922759 Alicycliphilus denitrificans BC 10104881 YP_004127440.1 CDS Alide_2822 NC_014910.1 2922890 2923117 R PFAM: SirA-like domain-containing protein; KEGG: dia:Dtpsy_2384 SirA family protein; sira-like domain-containing protein complement(2922890..2923117) Alicycliphilus denitrificans BC 10104882 YP_004127441.1 CDS Alide_2823 NC_014910.1 2923123 2923686 R PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_2385 NUDIX hydrolase; nudix hydrolase complement(2923123..2923686) Alicycliphilus denitrificans BC 10104883 YP_004127442.1 CDS Alide_2824 NC_014910.1 2923692 2924597 R KEGG: dia:Dtpsy_2386 cysteine synthase B; TIGRFAM: cysteine synthase B; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; cysteine synthase B complement(2923692..2924597) Alicycliphilus denitrificans BC 10104884 YP_004127443.1 CDS Alide_2825 NC_014910.1 2925208 2925450 R PFAM: Protein of unknown function DUF2274; KEGG: ajs:Ajs_2901 hypothetical protein; hypothetical protein complement(2925208..2925450) Alicycliphilus denitrificans BC 10104885 YP_004127444.1 CDS Alide_2826 NC_014910.1 2925447 2926718 R PFAM: conjugation TrbI family protein; KEGG: rpi:Rpic_2653 conjugation TrbI family protein; conjugation trbi family protein complement(2925447..2926718) Alicycliphilus denitrificans BC 10104886 YP_004127445.1 CDS Alide_2827 NC_014910.1 2926721 2927713 R KEGG: dia:Dtpsy_3498 P-type conjugative transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; p-type conjugative transfer protein trbg complement(2926721..2927713) Alicycliphilus denitrificans BC 10104887 YP_004127446.1 CDS Alide_2828 NC_014910.1 2927710 2928414 R KEGG: dia:Dtpsy_3499 conjugal transfer protein TrbF; conjugal transfer protein trbf complement(2927710..2928414) Alicycliphilus denitrificans BC 10104888 YP_004127447.1 CDS Alide_2829 NC_014910.1 2928433 2929785 R KEGG: dia:Dtpsy_3500 conjugal transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; p-type conjugative transfer protein trbl complement(2928433..2929785) Alicycliphilus denitrificans BC 10104889 YP_004127448.1 CDS Alide_2830 NC_014910.1 2929782 2930096 R KEGG: dac:Daci_2694 lipoprotein; lipoprotein complement(2929782..2930096) Alicycliphilus denitrificans BC 10104890 YP_004127449.1 CDS Alide_2831 NC_014910.1 2930108 2930863 R TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: dia:Dtpsy_3502 conjugal transfer protein TrbJ; p-type conjugative transfer protein trbj complement(2930108..2930863) Alicycliphilus denitrificans BC 10104891 YP_004127450.1 CDS Alide_2832 NC_014910.1 2930860 2933319 R KEGG: tgr:Tgr7_1898 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase; type IV transport system protein VirB complement(2930860..2933319) Alicycliphilus denitrificans BC 10104892 YP_004127451.1 CDS Alide_2833 NC_014910.1 2933334 2933606 R KEGG: rme:Rmet_1343 conjugal transfer TrbD transmembrane protein; conjugal transfer trbd transmembrane protein complement(2933334..2933606) Alicycliphilus denitrificans BC 10104893 YP_004127452.1 CDS Alide_2834 NC_014910.1 2933603 2933989 R PFAM: Conjugal transfer protein TrbC; KEGG: dia:Dtpsy_3505 conjugal transfer protein TrbC; conjugal transfer protein trbc complement(2933603..2933989) Alicycliphilus denitrificans BC 10104894 YP_004127453.1 CDS Alide_2835 NC_014910.1 2933986 2935038 R KEGG: sml:Smlt1291 conjugal transfer protein; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; p-type conjugative transfer atpase trbb complement(2933986..2935038) Alicycliphilus denitrificans BC 10104895 YP_004127454.1 CDS Alide_2836 NC_014910.1 2935035 2935499 R KEGG: dac:Daci_2700 CopG/DNA-binding domain-containing protein; copg/DNA-binding domain-containing protein complement(2935035..2935499) Alicycliphilus denitrificans BC 10104896 YP_004127455.1 CDS Alide_2837 NC_014910.1 2935496 2937502 R PFAM: TRAG family protein; KEGG: dac:Daci_2701 conjugal transfer coupling protein TraG; trag family protein complement(2935496..2937502) Alicycliphilus denitrificans BC 10104897 YP_004127456.1 CDS Alide_2838 NC_014910.1 2937746 2937973 R KEGG: dia:Dtpsy_3509 hypothetical protein; hypothetical protein complement(2937746..2937973) Alicycliphilus denitrificans BC 10104898 YP_004127457.1 CDS Alide_2839 NC_014910.1 2937987 2938913 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1314 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2937987..2938913) Alicycliphilus denitrificans BC 10104899 YP_004127458.1 CDS Alide_2840 NC_014910.1 2939105 2941129 R manually curated; KEGG: dia:Dtpsy_1313 hypothetical protein; hypothetical protein complement(2939105..2941129) Alicycliphilus denitrificans BC 10104900 YP_004127459.1 CDS Alide_2841 NC_014910.1 2941203 2942177 R manually curated; KEGG: dia:Dtpsy_1312 phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase; phosphate acetyltransferase complement(2941203..2942177) Alicycliphilus denitrificans BC 10104901 YP_004127460.1 CDS Alide_2842 NC_014910.1 2942170 2942733 R PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_1311 UspA domain protein; uspa domain-containing protein complement(2942170..2942733) Alicycliphilus denitrificans BC 10104902 YP_004127461.1 CDS Alide_2843 NC_014910.1 2942802 2943548 R KEGG: dia:Dtpsy_1310 acetoacetyl-CoA reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; acetoacetyl-CoA reductase complement(2942802..2943548) Alicycliphilus denitrificans BC 10104903 YP_004127462.1 CDS Alide_2844 NC_014910.1 2943559 2944002 R KEGG: dia:Dtpsy_1309 hypothetical protein; hypothetical protein complement(2943559..2944002) Alicycliphilus denitrificans BC 10104904 YP_004127463.1 CDS Alide_2845 NC_014910.1 2944110 2945867 R PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: dia:Dtpsy_1308 poly-beta-hydroxybutyrate polymerase domain protein; poly-beta-hydroxybutyrate polymerase domain-containing protein complement(2944110..2945867) Alicycliphilus denitrificans BC 10104905 YP_004127464.1 CDS Alide_2846 NC_014910.1 2946189 2946797 D PFAM: regulatory protein TetR; KEGG: dia:Dtpsy_1307 transcriptional regulator, TetR family; regulatory protein tetr 2946189..2946797 Alicycliphilus denitrificans BC 10104906 YP_004127465.1 CDS Alide_2847 NC_014910.1 2946866 2947285 D KEGG: dia:Dtpsy_1306 hypothetical protein; hypothetical protein 2946866..2947285 Alicycliphilus denitrificans BC 10104907 YP_004127466.1 CDS Alide_2848 NC_014910.1 2947313 2948353 D PFAM: secretion protein HlyD family protein; KEGG: dia:Dtpsy_1305 hypothetical protein; secretion protein hlyd family protein 2947313..2948353 Alicycliphilus denitrificans BC 10104908 YP_004127467.1 CDS Alide_2849 NC_014910.1 2948355 2950127 D KEGG: dia:Dtpsy_1304 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2948355..2950127 Alicycliphilus denitrificans BC 10104909 YP_004127468.1 CDS Alide_2850 NC_014910.1 2950124 2951293 D PFAM: ABC transporter; KEGG: dia:Dtpsy_1303 ABC transporter; ABC transporter 2950124..2951293 Alicycliphilus denitrificans BC 10104910 YP_004127469.1 CDS Alide_2851 NC_014910.1 2951298 2952416 D PFAM: ABC transporter; KEGG: dia:Dtpsy_1302 ABC transporter; ABC transporter 2951298..2952416 Alicycliphilus denitrificans BC 10104911 YP_004127470.1 CDS Alide_2852 NC_014910.1 2952413 2954062 D KEGG: dia:Dtpsy_1301 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family 2952413..2954062 Alicycliphilus denitrificans BC 10104912 YP_004127471.1 CDS Alide_2853 NC_014910.1 2954059 2955210 D PFAM: iron-containing alcohol dehydrogenase; KEGG: eba:ebA4623 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase 2954059..2955210 Alicycliphilus denitrificans BC 10104913 YP_004127472.1 CDS Alide_2854 NC_014910.1 2955264 2955473 D KEGG: dia:Dtpsy_1300 hypothetical protein; hypothetical protein 2955264..2955473 Alicycliphilus denitrificans BC 10104914 YP_004127473.1 CDS Alide_2855 NC_014910.1 2955481 2956893 D PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dia:Dtpsy_1299 beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase 2955481..2956893 Alicycliphilus denitrificans BC 10104915 YP_004127474.1 CDS Alide_2856 NC_014910.1 2956890 2957756 D PFAM: Conserved hypothetical protein CHP00730; KEGG: dia:Dtpsy_1298 hypothetical protein; hypothetical protein 2956890..2957756 Alicycliphilus denitrificans BC 10104916 YP_004127475.1 CDS Alide_2857 NC_014910.1 2957753 2958952 D PFAM: Protein of unknown function DUF2219; KEGG: dia:Dtpsy_1297 hypothetical protein; hypothetical protein 2957753..2958952 Alicycliphilus denitrificans BC 10104917 YP_004127476.1 CDS Alide_2858 NC_014910.1 2959160 2959474 D KEGG: dia:Dtpsy_1296 hypothetical protein; hypothetical protein 2959160..2959474 Alicycliphilus denitrificans BC 10104918 YP_004127477.1 CDS Alide_2859 NC_014910.1 2959514 2960722 D TIGRFAM: acetate kinase; KEGG: dia:Dtpsy_1295 acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 2959514..2960722 Alicycliphilus denitrificans BC 10104919 YP_004127478.1 CDS Alide_2860 NC_014910.1 2960806 2963178 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase-like; KEGG: dia:Dtpsy_1294 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; d-xylulose 5-phosphate/d-fructose 6-phosphate phosphoketolase 2960806..2963178 Alicycliphilus denitrificans BC 10104920 YP_004127479.1 CDS Alide_2862 NC_014910.1 2963691 2964170 R KEGG: ajs:Ajs_2417 hypothetical protein; hypothetical protein complement(2963691..2964170) Alicycliphilus denitrificans BC 10104922 YP_004127480.1 CDS Alide_2863 NC_014910.1 2964294 2964755 R KEGG: dia:Dtpsy_1431 hypothetical protein; hypothetical protein complement(2964294..2964755) Alicycliphilus denitrificans BC 10104923 YP_004127481.1 CDS Alide_2864 NC_014910.1 2964752 2965219 R KEGG: dia:Dtpsy_1432 transmembrane anti-sigma factor; transmembrane anti-sigma factor complement(2964752..2965219) Alicycliphilus denitrificans BC 10104924 YP_004127482.1 CDS Alide_2865 NC_014910.1 2965235 2965789 R KEGG: dia:Dtpsy_1433 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 family RNA polymerase sigma factor complement(2965235..2965789) Alicycliphilus denitrificans BC 10104925 YP_004127483.1 CDS Alide_2866 NC_014910.1 2966048 2966458 D KEGG: dia:Dtpsy_3434 hypothetical protein; hypothetical protein 2966048..2966458 Alicycliphilus denitrificans BC 10104926 YP_004127484.1 CDS Alide_2867 NC_014910.1 2966488 2966964 D KEGG: dia:Dtpsy_3435 hypothetical protein; hypothetical protein 2966488..2966964 Alicycliphilus denitrificans BC 10104927 YP_004127485.1 CDS Alide_2868 NC_014910.1 2966975 2969179 D PFAM: flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ajs:Ajs_4088 oxidoreductase FAD/NAD(P)-binding subunit; flavodoxin/nitric oxide synthase 2966975..2969179 Alicycliphilus denitrificans BC 10104928 YP_004127486.1 CDS Alide_2869 NC_014910.1 2969184 2970137 D KEGG: dia:Dtpsy_3437 ApbE family lipoprotein; manually curated; PFAM: ApbE family lipoprotein; apbe family lipoprotein 2969184..2970137 Alicycliphilus denitrificans BC 10104929 YP_004127487.1 CDS Alide_2870 NC_014910.1 2970236 2970745 D KEGG: dia:Dtpsy_3438 hypothetical protein; hypothetical protein 2970236..2970745 Alicycliphilus denitrificans BC 10104930 YP_004127488.1 CDS Alide_2871 NC_014910.1 2970884 2971459 D KEGG: psa:PST_0904 cytochrome b561; cytochrome b561 2970884..2971459 Alicycliphilus denitrificans BC 10104931 YP_004127489.1 CDS Alide_2872 NC_014910.1 2971556 2972320 D KEGG: sti:Sthe_3401 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein 2971556..2972320 Alicycliphilus denitrificans BC 10104932 YP_004127490.1 CDS Alide_2873 NC_014910.1 2972431 2972661 D PFAM: Heavy metal transport/detoxification protein; KEGG: mlu:Mlut_09570 copper chaperone; heavy metal transport/detoxification protein 2972431..2972661 Alicycliphilus denitrificans BC 10104933 YP_004127491.1 CDS Alide_2874 NC_014910.1 2972768 2974687 D KEGG: nca:Noca_1662 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase 2972768..2974687 Alicycliphilus denitrificans BC 10104934 YP_004127492.1 CDS Alide_2875 NC_014910.1 2974882 2976867 R KEGG: dac:Daci_0453 hypothetical protein; hypothetical protein complement(2974882..2976867) Alicycliphilus denitrificans BC 10104935 YP_004127493.1 CDS Alide_2876 NC_014910.1 2977316 2977903 R PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase; peptidase s26 complement(2977316..2977903) Alicycliphilus denitrificans BC 10104936 YP_004127494.1 CDS Alide_2877 NC_014910.1 2977900 2978445 R KEGG: rme:Rmet_1257 hypothetical protein; hypothetical protein complement(2977900..2978445) Alicycliphilus denitrificans BC 10104937 YP_004127495.1 CDS Alide_2879 NC_014910.1 2978601 2979515 R PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein complement(2978601..2979515) Alicycliphilus denitrificans BC 10104939 YP_004127496.1 CDS Alide_2880 NC_014910.1 2979512 2979835 R PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein complement(2979512..2979835) Alicycliphilus denitrificans BC 10104940 YP_004127497.1 CDS Alide_2881 NC_014910.1 2979866 2980054 R KEGG: bte:BTH_I0807 integrase protein; integrase protein complement(2979866..2980054) Alicycliphilus denitrificans BC 10104941 YP_004127498.1 CDS Alide_2883 NC_014910.1 2980531 2981367 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 2980531..2981367 Alicycliphilus denitrificans BC 10104943 YP_004127499.1 CDS Alide_2884 NC_014910.1 2981510 2982103 D KEGG: azc:AZC_4590 transcriptional regulator; transcriptional regulator 2981510..2982103 Alicycliphilus denitrificans BC 10104944 YP_004127500.1 CDS Alide_2885 NC_014910.1 2982153 2983682 R PFAM: AMP-dependent synthetase and ligase; KEGG: rlt:Rleg2_6334 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(2982153..2983682) Alicycliphilus denitrificans BC 10104945 YP_004127501.1 CDS Alide_2886 NC_014910.1 2983733 2984692 R PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_5269 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase complement(2983733..2984692) Alicycliphilus denitrificans BC 10104946 YP_004127502.1 CDS Alide_2887 NC_014910.1 2984708 2986714 R PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: pol:Bpro_5270 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase l chain ATP-binding protein complement(2984708..2986714) Alicycliphilus denitrificans BC 10104947 YP_004127503.1 CDS Alide_2888 NC_014910.1 2986723 2988303 R KEGG: pol:Bpro_5271 carboxyl transferase; PFAM: carboxyl transferase; methylcrotonoyl-CoA carboxylase complement(2986723..2988303) Alicycliphilus denitrificans BC 10104948 YP_004127504.1 CDS Alide_2889 NC_014910.1 2988323 2989684 R KEGG: rxy:Rxyl_1851 phenylacetate-CoA ligase; phenylacetate--CoA ligase complement(2988323..2989684) Alicycliphilus denitrificans BC 10104949 YP_004127505.1 CDS Alide_2890 NC_014910.1 2989784 2990569 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_3871 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 2989784..2990569 Alicycliphilus denitrificans BC 10104950 YP_004127506.1 CDS Alide_2891 NC_014910.1 2990696 2991916 D PFAM: Extracellular ligand-binding receptor; KEGG: mno:Mnod_4450 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 2990696..2991916 Alicycliphilus denitrificans BC 10104951 YP_004127507.1 CDS Alide_2892 NC_014910.1 2992277 2994199 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dia:Dtpsy_1188 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2992277..2994199) Alicycliphilus denitrificans BC 10104952 YP_004127508.1 CDS Alide_2893 NC_014910.1 2994349 2994621 R KEGG: dia:Dtpsy_1187 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(2994349..2994621) Alicycliphilus denitrificans BC 10104954 YP_004127509.1 CDS Alide_2894 NC_014910.1 2994966 2995553 R TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: dia:Dtpsy_1186 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; cdp-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase complement(2994966..2995553) Alicycliphilus denitrificans BC 10104955 YP_004127510.1 CDS Alide_2895 NC_014910.1 2995583 2997541 R TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; KEGG: dia:Dtpsy_1185 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1; excinuclease abc, c subunit complement(2995583..2997541) Alicycliphilus denitrificans BC 10104956 YP_004127511.1 CDS Alide_2896 NC_014910.1 2997666 2998295 R KEGG: ajs:Ajs_2624 hypothetical protein; hypothetical protein complement(2997666..2998295) Alicycliphilus denitrificans BC 10104957 YP_004127512.1 CDS Alide_2897 NC_014910.1 2998769 2999998 D PFAM: major facilitator superfamily MFS_1; KEGG: azo:azo3693 hypothetical protein; major facilitator superfamily protein 2998769..2999998 Alicycliphilus denitrificans BC 10104960 YP_004127513.1 CDS Alide_2898 NC_014910.1 3000014 3000286 R KEGG: ctt:CtCNB1_0646 histone-like nucleoid-structuring protein H-NS; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein h-ns complement(3000014..3000286) Alicycliphilus denitrificans BC 10104961 YP_004127514.1 CDS Alide_2899 NC_014910.1 3000368 3001165 D KEGG: reh:H16_A2948 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 3000368..3001165 Alicycliphilus denitrificans BC 10104962 YP_004127515.1 CDS Alide_2900 NC_014910.1 3001418 3002191 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dac:Daci_0266 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 3001418..3002191 Alicycliphilus denitrificans BC 10104963 YP_004127516.1 CDS Alide_2901 NC_014910.1 3002214 3003440 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: tin:Tint_1589 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 3002214..3003440 Alicycliphilus denitrificans BC 10104964 YP_004127517.1 CDS Alide_2902 NC_014910.1 3003450 3005150 D PFAM: AMP-dependent synthetase and ligase; KEGG: tin:Tint_1587 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 3003450..3005150 Alicycliphilus denitrificans BC 10104965 YP_004127518.1 CDS Alide_2903 NC_014910.1 3005291 3006457 R PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0264 extracellular ligand-binding receptor; ABC transporter substrate-binding protein complement(3005291..3006457) Alicycliphilus denitrificans BC 10104966 YP_004127519.1 CDS Alide_2904 NC_014910.1 3006502 3007209 R KEGG: dac:Daci_0263 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(3006502..3007209) Alicycliphilus denitrificans BC 10104967 YP_004127520.1 CDS Alide_2905 NC_014910.1 3007196 3007960 R KEGG: dac:Daci_0262 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(3007196..3007960) Alicycliphilus denitrificans BC 10104968 YP_004127521.1 CDS Alide_2906 NC_014910.1 3007947 3008921 R PFAM: inner-membrane translocator; KEGG: dac:Daci_0261 inner-membrane translocator; inner-membrane translocator complement(3007947..3008921) Alicycliphilus denitrificans BC 10104969 YP_004127522.1 CDS Alide_2907 NC_014910.1 3008922 3009785 R PFAM: inner-membrane translocator; KEGG: dac:Daci_0260 inner-membrane translocator; inner-membrane translocator complement(3008922..3009785) Alicycliphilus denitrificans BC 10104970 YP_004127523.1 CDS Alide_2908 NC_014910.1 3010384 3011352 D KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein 3010384..3011352 Alicycliphilus denitrificans BC 10104971 YP_004127524.1 CDS Alide_2909 NC_014910.1 3011417 3012472 D PFAM: porin Gram-negative type; KEGG: bcm:Bcenmc03_6621 porin; porin 3011417..3012472 Alicycliphilus denitrificans BC 10104972 YP_004127525.1 CDS Alide_2910 NC_014910.1 3012514 3012999 D KEGG: aav:Aave_4649 protein of unknown function DUF894, DitE; manually curated; PFAM: protein of unknown function DUF894 DitE; hypothetical protein 3012514..3012999 Alicycliphilus denitrificans BC 10104973 YP_004127526.1 CDS Alide_2911 NC_014910.1 3013106 3013915 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB0629 enoyl-CoA hydratase; enoyl-CoA hydratase 3013106..3013915 Alicycliphilus denitrificans BC 10104974 YP_004127527.1 CDS Alide_2912 NC_014910.1 3014011 3015504 D PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_C7306 aldehyde dehydrogenase (acceptor); aldehyde dehydrogenase 3014011..3015504 Alicycliphilus denitrificans BC 10104975 YP_004127528.1 CDS Alide_2913 NC_014910.1 3015593 3017071 D PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_C7305 aldehyde dehydrogenase (acceptor); aldehyde dehydrogenase 3015593..3017071 Alicycliphilus denitrificans BC 10104976 YP_004127529.1 CDS Alide_2914 NC_014910.1 3017142 3018548 D PFAM: MmgE/PrpD family protein; KEGG: bpa:BPP0622 hypothetical protein; mmge/prpd family protein 3017142..3018548 Alicycliphilus denitrificans BC 10104977 YP_004127530.1 CDS Alide_2915 NC_014910.1 3018572 3019543 D KEGG: bbr:BB0625 hypothetical protein; hypothetical protein 3018572..3019543 Alicycliphilus denitrificans BC 10104978 YP_004127531.1 CDS Alide_2916 NC_014910.1 3019726 3019935 D KEGG: ank:AnaeK_1894 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 3019726..3019935 Alicycliphilus denitrificans BC 10104979 YP_004127532.1 CDS Alide_2917 NC_014910.1 3019943 3021430 D PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_C6756 aldehyde dehydrogenase (acceptor); aldehyde dehydrogenase 3019943..3021430 Alicycliphilus denitrificans BC 10104980 YP_004127533.1 CDS Alide_2918 NC_014910.1 3021448 3022518 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bur:Bcep18194_C7304 zinc-containing alcohol dehydrogenase superfamily protein; alcohol dehydrogenase 3021448..3022518 Alicycliphilus denitrificans BC 10104981 YP_004127534.1 CDS Alide_2919 NC_014910.1 3022605 3023738 D PFAM: Extracellular ligand-binding receptor; KEGG: jan:Jann_2263 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 3022605..3023738 Alicycliphilus denitrificans BC 10104982 YP_004127535.1 CDS Alide_2920 NC_014910.1 3023817 3024710 D PFAM: inner-membrane translocator; KEGG: jan:Jann_2267 inner-membrane translocator; inner-membrane translocator 3023817..3024710 Alicycliphilus denitrificans BC 10104983 YP_004127536.1 CDS Alide_2921 NC_014910.1 3024715 3025608 D PFAM: inner-membrane translocator; KEGG: jan:Jann_2266 inner-membrane translocator; inner-membrane translocator 3024715..3025608 Alicycliphilus denitrificans BC 10104984 YP_004127537.1 CDS Alide_2922 NC_014910.1 3025605 3026369 D KEGG: jan:Jann_2265 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3025605..3026369 Alicycliphilus denitrificans BC 10104985 YP_004127538.1 CDS Alide_2923 NC_014910.1 3026641 3027387 D KEGG: jan:Jann_2264 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3026641..3027387 Alicycliphilus denitrificans BC 10104986 YP_004127539.1 CDS Alide_2924 NC_014910.1 3027498 3029213 R KEGG: dia:Dtpsy_1751 electron-transferring-flavoprotein dehydrogenase; PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; electron-transferring-flavoprotein dehydrogenase complement(3027498..3029213) Alicycliphilus denitrificans BC 10104987 YP_004127540.1 CDS Alide_2925 NC_014910.1 3029274 3030119 R PFAM: HpcH/HpaI aldolase; KEGG: bur:Bcep18194_C7302 HpcH/HpaI aldolase; hpch/hpai aldolase complement(3029274..3030119) Alicycliphilus denitrificans BC 10104988 YP_004127541.1 CDS Alide_2926 NC_014910.1 3030122 3031321 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C7301 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f complement(3030122..3031321) Alicycliphilus denitrificans BC 10104989 YP_004127542.1 CDS Alide_2927 NC_014910.1 3031334 3032182 R KEGG: bbr:BB0622 hypothetical protein; hypothetical protein complement(3031334..3032182) Alicycliphilus denitrificans BC 10104990 YP_004127543.1 CDS Alide_2928 NC_014910.1 3032271 3033203 R PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha complement(3032271..3033203) Alicycliphilus denitrificans BC 10104991 YP_004127544.1 CDS Alide_2929 NC_014910.1 3033221 3033970 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunits alpha/beta complement(3033221..3033970) Alicycliphilus denitrificans BC 10104992 YP_004127545.1 CDS Alide_2930 NC_014910.1 3033993 3035159 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bur:Bcep18194_C7297 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(3033993..3035159) Alicycliphilus denitrificans BC 10104993 YP_004127546.1 CDS Alide_2931 NC_014910.1 3035269 3036198 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bur:Bcep18194_C7296 LysR family transcriptional regulator; LysR family transcriptional regulator 3035269..3036198 Alicycliphilus denitrificans BC 10104994 YP_004127547.1 CDS Alide_2932 NC_014910.1 3036195 3037625 R PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_C7308 MmgE/PrpD; mmge/prpd family protein complement(3036195..3037625) Alicycliphilus denitrificans BC 10104995 YP_004127548.1 CDS Alide_2933 NC_014910.1 3037637 3038818 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB0617 CaiB/BaiF family protein; l-carnitine dehydratase/bile acid-inducible protein f complement(3037637..3038818) Alicycliphilus denitrificans BC 10104996 YP_004127549.1 CDS Alide_2935 NC_014910.1 3039726 3041663 R PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB0615 AMP-binding enzyme; AMP-dependent synthetase/ligase complement(3039726..3041663) Alicycliphilus denitrificans BC 10104998 YP_004127550.1 CDS Alide_2936 NC_014910.1 3041677 3042882 R TIGRFAM: acetyl-CoA acetyltransferase; KEGG: bur:Bcep18194_C7332 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase complement(3041677..3042882) Alicycliphilus denitrificans BC 10104999 YP_004127551.1 CDS Alide_2937 NC_014910.1 3042963 3043712 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0613 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr complement(3042963..3043712) Alicycliphilus denitrificans BC 10105000 YP_004127552.1 CDS Alide_2938 NC_014910.1 3043743 3044618 R KEGG: bpa:BPP0606 enoyl-CoA hydratase; PFAM: MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase complement(3043743..3044618) Alicycliphilus denitrificans BC 10105001 YP_004127553.1 CDS Alide_2939 NC_014910.1 3044854 3046005 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB0611 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3044854..3046005 Alicycliphilus denitrificans BC 10105002 YP_004127554.1 CDS Alide_2940 NC_014910.1 3046045 3046914 R PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_C7313 alpha/beta hydrolase fold; alpha/beta hydrolase complement(3046045..3046914) Alicycliphilus denitrificans BC 10105003 YP_004127555.1 CDS Alide_2941 NC_014910.1 3047027 3047860 D KEGG: bpa:BPP0603 IclR family regulatory protein; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 3047027..3047860 Alicycliphilus denitrificans BC 10105004 YP_004127556.1 CDS Alide_2942 NC_014910.1 3047857 3048651 D KEGG: bbr:BB0608 IclR family regulatory protein; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 3047857..3048651 Alicycliphilus denitrificans BC 10105005 YP_004127557.1 CDS Alide_2943 NC_014910.1 3048695 3050131 R PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_C6759 MmgE/PrpD; mmge/prpd family protein complement(3048695..3050131) Alicycliphilus denitrificans BC 10105006 YP_004127558.1 CDS Alide_2944 NC_014910.1 3050128 3050748 R KEGG: bur:Bcep18194_C6760 hypothetical protein; hypothetical protein complement(3050128..3050748) Alicycliphilus denitrificans BC 10105007 YP_004127559.1 CDS Alide_2945 NC_014910.1 3050821 3051768 R KEGG: vei:Veis_2943 hypothetical protein; hypothetical protein complement(3050821..3051768) Alicycliphilus denitrificans BC 10105008 YP_004127560.1 CDS Alide_2946 NC_014910.1 3052008 3053627 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bur:Bcep18194_C7484 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 3052008..3053627 Alicycliphilus denitrificans BC 10105009 YP_004127561.1 CDS Alide_2947 NC_014910.1 3053653 3055125 D PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_C7485 aldehyde dehydrogenase; aldehyde dehydrogenase 3053653..3055125 Alicycliphilus denitrificans BC 10105010 YP_004127562.1 CDS Alide_2948 NC_014910.1 3055156 3056085 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bur:Bcep18194_C7486 LysR family transcriptional regulator; LysR family transcriptional regulator 3055156..3056085 Alicycliphilus denitrificans BC 10105011 YP_004127563.1 CDS Alide_2949 NC_014910.1 3056086 3057303 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f complement(3056086..3057303) Alicycliphilus denitrificans BC 10105012 YP_004127564.1 CDS Alide_2950 NC_014910.1 3057309 3058322 R KEGG: reu:Reut_A1831 hypothetical protein; hypothetical protein complement(3057309..3058322) Alicycliphilus denitrificans BC 10105013 YP_004127565.1 CDS Alide_2951 NC_014910.1 3058384 3059199 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_5272 short chain enoyl-CoA hydratase; enoyl-CoA hydratase complement(3058384..3059199) Alicycliphilus denitrificans BC 10105014 YP_004127566.1 CDS Alide_2952 NC_014910.1 3059241 3060047 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_C7276 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(3059241..3060047) Alicycliphilus denitrificans BC 10105015 YP_004127567.1 CDS Alide_2953 NC_014910.1 3060317 3060430 D hypothetical protein 3060317..3060430 Alicycliphilus denitrificans BC 10105016 YP_004127568.1 CDS Alide_2954 NC_014910.1 3060576 3061718 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase 3060576..3061718 Alicycliphilus denitrificans BC 10105017 YP_004127569.1 CDS Alide_2955 NC_014910.1 3061733 3062233 D PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_A1834 MaoC-like dehydratase; MaoC domain-containing protein 3061733..3062233 Alicycliphilus denitrificans BC 10105018 YP_004127570.1 CDS Alide_2956 NC_014910.1 3062239 3063597 D PFAM: protein of unknown function DUF1446; KEGG: sth:STH1574 hypothetical protein; hypothetical protein 3062239..3063597 Alicycliphilus denitrificans BC 10105019 YP_004127571.1 CDS Alide_2957 NC_014910.1 3063599 3063940 D KEGG: bbt:BBta_2933 hypothetical protein; hypothetical protein 3063599..3063940 Alicycliphilus denitrificans BC 10105020 YP_004127572.1 CDS Alide_2958 NC_014910.1 3063953 3065134 D KEGG: eba:ebA306 lipid-transfer protein; PFAM: Beta-ketoacyl synthase; propanoyl-CoA c-acyltransferase 3063953..3065134 Alicycliphilus denitrificans BC 10105021 YP_004127573.1 CDS Alide_2959 NC_014910.1 3065252 3066259 D KEGG: reu:Reut_A1831 hypothetical protein; hypothetical protein 3065252..3066259 Alicycliphilus denitrificans BC 10105022 YP_004127574.1 CDS Alide_2960 NC_014910.1 3066265 3067497 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3066265..3067497 Alicycliphilus denitrificans BC 10105023 YP_004127575.1 CDS Alide_2961 NC_014910.1 3067545 3068702 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_A1830 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3067545..3068702 Alicycliphilus denitrificans BC 10105024 YP_004127576.1 CDS Alide_2962 NC_014910.1 3068727 3068885 D KEGG: dac:Daci_0790 hypothetical protein; hypothetical protein 3068727..3068885 Alicycliphilus denitrificans BC 10105025 YP_004127577.1 CDS Alide_2963 NC_014910.1 3069212 3069688 D KEGG: jan:Jann_3827 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; hypothetical protein 3069212..3069688 Alicycliphilus denitrificans BC 10105026 YP_004127578.1 CDS Alide_2964 NC_014910.1 3069734 3070891 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C7493 alpha-methylacyl-CoA racemase; l-carnitine dehydratase/bile acid-inducible protein f 3069734..3070891 Alicycliphilus denitrificans BC 10105027 YP_004127579.1 CDS Alide_2966 NC_014910.1 3071052 3072020 R KEGG: bbr:BB0605 hypothetical protein; hypothetical protein complement(3071052..3072020) Alicycliphilus denitrificans BC 10105029 YP_004127580.1 CDS Alide_2967 NC_014910.1 3072187 3073143 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B2640 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3072187..3073143) Alicycliphilus denitrificans BC 10105030 YP_004127581.1 CDS Alide_2968 NC_014910.1 3073232 3074653 D PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_B2639 hypothetical protein; mmge/prpd family protein 3073232..3074653 Alicycliphilus denitrificans BC 10105031 YP_004127582.1 CDS Alide_2969 NC_014910.1 3074818 3075600 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0604 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 3074818..3075600 Alicycliphilus denitrificans BC 10105032 YP_004127583.1 CDS Alide_2970 NC_014910.1 3075597 3077567 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; alanine dehydrogenase/PNT domain protein; KEGG: bbr:BB0603 NADH:flavin oxidoreductase / NADH oxidase family protein; NADH:flavin oxidoreductase 3075597..3077567 Alicycliphilus denitrificans BC 10105033 YP_004127584.1 CDS Alide_2971 NC_014910.1 3077582 3078301 R KEGG: bbr:BB0602 ABC transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(3077582..3078301) Alicycliphilus denitrificans BC 10105034 YP_004127585.1 CDS Alide_2972 NC_014910.1 3078291 3079040 R KEGG: bbr:BB0601 ABC transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(3078291..3079040) Alicycliphilus denitrificans BC 10105035 YP_004127586.1 CDS Alide_2973 NC_014910.1 3079043 3079960 R PFAM: inner-membrane translocator; KEGG: bbr:BB0600 branched-chain amino acid transport system permease protein; inner-membrane translocator complement(3079043..3079960) Alicycliphilus denitrificans BC 10105036 YP_004127587.1 CDS Alide_2974 NC_014910.1 3079953 3080828 R PFAM: inner-membrane translocator; KEGG: bbr:BB0599 branched-chain amino acid transport system permease protein; inner-membrane translocator complement(3079953..3080828) Alicycliphilus denitrificans BC 10105037 YP_004127588.1 CDS Alide_2975 NC_014910.1 3081007 3082182 R PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB0598 extracellular ligand binding protein; ABC transporter substrate-binding protein complement(3081007..3082182) Alicycliphilus denitrificans BC 10105038 YP_004127589.1 CDS Alide_2976 NC_014910.1 3082377 3083147 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB0597 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase complement(3082377..3083147) Alicycliphilus denitrificans BC 10105039 YP_004127590.1 CDS Alide_2977 NC_014910.1 3083152 3083835 R PFAM: nitroreductase; KEGG: bbr:BB0596 nitroreductase family protein; nitroreductase complement(3083152..3083835) Alicycliphilus denitrificans BC 10105040 YP_004127591.1 CDS Alide_2978 NC_014910.1 3083839 3084261 R KEGG: bbr:BB0595 hypothetical protein; hypothetical protein complement(3083839..3084261) Alicycliphilus denitrificans BC 10105041 YP_004127592.1 CDS Alide_2979 NC_014910.1 3084258 3085223 R KEGG: bbr:BB0594 hypothetical protein; hypothetical protein complement(3084258..3085223) Alicycliphilus denitrificans BC 10105042 YP_004127593.1 CDS Alide_2980 NC_014910.1 3085236 3086396 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB0593 CaiB/BaiF family protein; l-carnitine dehydratase/bile acid-inducible protein f complement(3085236..3086396) Alicycliphilus denitrificans BC 10105043 YP_004127594.1 CDS Alide_2981 NC_014910.1 3086398 3087642 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_B2644 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f complement(3086398..3087642) Alicycliphilus denitrificans BC 10105044 YP_004127595.1 CDS Alide_2982 NC_014910.1 3087719 3088885 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bur:Bcep18194_C7290 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(3087719..3088885) Alicycliphilus denitrificans BC 10105045 YP_004127596.1 CDS Alide_2983 NC_014910.1 3088897 3089358 R PFAM: MaoC domain protein dehydratase; KEGG: bur:Bcep18194_C7289 MaoC-like dehydratase; MaoC domain-containing protein complement(3088897..3089358) Alicycliphilus denitrificans BC 10105046 YP_004127597.1 CDS Alide_2984 NC_014910.1 3089386 3090270 R KEGG: bbr:BB0589 hypothetical protein; PFAM: HpcH/HpaI aldolase; citryl-CoA lyase complement(3089386..3090270) Alicycliphilus denitrificans BC 10105047 YP_004127598.1 CDS Alide_2985 NC_014910.1 3090475 3091092 R PFAM: regulatory protein TetR; KEGG: dac:Daci_4464 TetR family transcriptional regulator; regulatory protein tetr complement(3090475..3091092) Alicycliphilus denitrificans BC 10105048 YP_004127599.1 CDS Alide_2986 NC_014910.1 3091563 3093983 R SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: dia:Dtpsy_1130 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATP-dependent protease la complement(3091563..3093983) Alicycliphilus denitrificans BC 10105051 YP_004127600.1 CDS Alide_2987 NC_014910.1 3094122 3095387 R TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: dia:Dtpsy_1129 ATP-dependent protease ATP-binding subunit ClpX; SMART: AAA ATPase; ATP-dependent clp protease, ATP-binding subunit clpx complement(3094122..3095387) Alicycliphilus denitrificans BC 10105052 YP_004127601.1 CDS Alide_2988 NC_014910.1 3095487 3096095 R TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: dia:Dtpsy_1128 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; ATP-dependent clp protease, proteolytic subunit clpp complement(3095487..3096095) Alicycliphilus denitrificans BC 10105053 YP_004127602.1 CDS Alide_2989 NC_014910.1 3096220 3097530 R KEGG: dia:Dtpsy_1127 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type; trigger factor complement(3096220..3097530) Alicycliphilus denitrificans BC 10105054 YP_004127603.1 CDS Alide_2990 NC_014910.1 3097754 3100873 R PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_1207 acriflavin resistance protein; acriflavin resistance protein complement(3097754..3100873) Alicycliphilus denitrificans BC 10105056 YP_004127604.1 CDS Alide_2991 NC_014910.1 3100883 3102154 R KEGG: dia:Dtpsy_1125 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit complement(3100883..3102154) Alicycliphilus denitrificans BC 10105057 YP_004127605.1 CDS Alide_2992 NC_014910.1 3102247 3103125 D KEGG: dia:Dtpsy_1124 squalene synthase HpnC; TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; squalene synthase hpnc 3102247..3103125 Alicycliphilus denitrificans BC 10105058 YP_004127606.1 CDS Alide_2993 NC_014910.1 3103239 3104078 D TIGRFAM: squalene synthase HpnD; KEGG: dia:Dtpsy_1121 squalene synthase HpnD; PFAM: Squalene/phytoene synthase; squalene synthase hpnd 3103239..3104078 Alicycliphilus denitrificans BC 10105059 YP_004127607.1 CDS Alide_2994 NC_014910.1 3104110 3105744 R KEGG: rfr:Rfer_3023 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein complement(3104110..3105744) Alicycliphilus denitrificans BC 10105060 YP_004127608.1 CDS Alide_2995 NC_014910.1 3105927 3107219 D KEGG: ajs:Ajs_1201 amine oxidase; TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; squalene-associated fad-dependent desaturase 3105927..3107219 Alicycliphilus denitrificans BC 10105061 YP_004127609.1 CDS Alide_2996 NC_014910.1 3107233 3109257 D KEGG: pna:Pnap_2063 hypothetical protein; hypothetical protein 3107233..3109257 Alicycliphilus denitrificans BC 10105062 YP_004127610.1 CDS Alide_2997 NC_014910.1 3109459 3110712 R KEGG: dia:Dtpsy_1119 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; ribonuclease bn complement(3109459..3110712) Alicycliphilus denitrificans BC 10105063 YP_004127611.1 CDS Alide_2998 NC_014910.1 3110734 3111162 D PFAM: Protein of unknown function DUF2069, membrane; KEGG: dia:Dtpsy_1118 membrane protein-like protein; hypothetical protein 3110734..3111162 Alicycliphilus denitrificans BC 10105064 YP_004127612.1 CDS Alide_2999 NC_014910.1 3111159 3112583 D PFAM: FAD linked oxidase domain protein; KEGG: dia:Dtpsy_1117 FAD linked oxidase domain protein; fad linked oxidase domain-containing protein 3111159..3112583 Alicycliphilus denitrificans BC 10105065 YP_004127613.1 CDS Alide_3000 NC_014910.1 3112636 3113451 D TIGRFAM: thymidylate synthase; KEGG: ajs:Ajs_1197 thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase 3112636..3113451 Alicycliphilus denitrificans BC 10105066 YP_004127614.1 CDS Alide_3001 NC_014910.1 3113448 3113945 D KEGG: dia:Dtpsy_1115 dihydrofolate reductase; PFAM: dihydrofolate reductase region; dihydrofolate reductase 3113448..3113945 Alicycliphilus denitrificans BC 10105067 YP_004127615.1 CDS Alide_3002 NC_014910.1 3113911 3114441 R KEGG: vap:Vapar_3238 hypothetical protein; hypothetical protein complement(3113911..3114441) Alicycliphilus denitrificans BC 10105068 YP_004127616.1 CDS Alide_3003 NC_014910.1 3114476 3115129 R PFAM: OmpA/MotB domain protein; KEGG: vap:Vapar_3239 hypothetical protein; ompa/motb domain-containing protein complement(3114476..3115129) Alicycliphilus denitrificans BC 10105069 YP_004127617.1 CDS Alide_3004 NC_014910.1 3115126 3117213 R PFAM: protein of unknown function DUF802; KEGG: vap:Vapar_3240 protein of unknown function DUF802; hypothetical protein complement(3115126..3117213) Alicycliphilus denitrificans BC 10105070 YP_004127618.1 CDS Alide_3005 NC_014910.1 3117210 3117881 R KEGG: vap:Vapar_3241 hypothetical protein; hypothetical protein complement(3117210..3117881) Alicycliphilus denitrificans BC 10105071 YP_004127619.1 CDS Alide_3006 NC_014910.1 3118069 3118455 R PFAM: transposase IS4 family protein; KEGG: nwi:Nwi_1015 transposase, IS4; transposase is4 family protein complement(3118069..3118455) Alicycliphilus denitrificans BC 10105072 YP_004127620.1 CDS Alide_3007 NC_014910.1 3118452 3118829 R KEGG: rle:pRL110581 transposase-related protein; transposase-like protein complement(3118452..3118829) Alicycliphilus denitrificans BC 10105073 YP_004127621.1 CDS Alide_3008 NC_014910.1 3118906 3119616 R KEGG: tgr:Tgr7_1884 response regulator receiver protein; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver complement(3118906..3119616) Alicycliphilus denitrificans BC 10105074 YP_004127622.1 CDS Alide_3009 NC_014910.1 3119621 3122350 R KEGG: tgr:Tgr7_1885 sensor protein KdpD; PFAM: Osmosensitive K channel His kinase sensor; UspA domain-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; osmosensitive k channel his kinase sensor complement(3119621..3122350) Alicycliphilus denitrificans BC 10105075 YP_004127623.1 CDS Alide_3010 NC_014910.1 3122366 3122998 R TIGRFAM: potassium-transporting ATPase, C subunit; KEGG: pap:PSPA7_3714 K+-transporting ATPase subunit C; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C complement(3122366..3122998) Alicycliphilus denitrificans BC 10105076 YP_004127624.1 CDS Alide_3011 NC_014910.1 3123012 3125036 R KEGG: tgr:Tgr7_1888 potassium-transporting ATPase subunit B; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; k+-transporting atpase, b subunit complement(3123012..3125036) Alicycliphilus denitrificans BC 10105077 YP_004127625.1 CDS Alide_3012 NC_014910.1 3125048 3126748 R TIGRFAM: potassium-transporting ATPase, A subunit; KEGG: pap:PSPA7_3712 potassium-transporting ATPase subunit A; PFAM: K transporting ATPase A subunit; potassium-transporting atpase, a subunit complement(3125048..3126748) Alicycliphilus denitrificans BC 10105078 YP_004127626.1 CDS Alide_3013 NC_014910.1 3126961 3127251 D KEGG: shn:Shewana3_1258 XRE family transcriptional regulator; hypothetical protein 3126961..3127251 Alicycliphilus denitrificans BC 10105079 YP_004127627.1 CDS Alide_3014 NC_014910.1 3127258 3128034 D KEGG: dia:Dtpsy_1114 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 3127258..3128034 Alicycliphilus denitrificans BC 10105080 YP_004127628.1 CDS Alide_3015 NC_014910.1 3128358 3129797 R TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: dia:Dtpsy_1112 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: response regulator receiver; AAA ATPase; nitrogen regulation protein nr(i) complement(3128358..3129797) Alicycliphilus denitrificans BC 10105081 YP_004127629.1 CDS Alide_3016 NC_014910.1 3129839 3130909 R manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dia:Dtpsy_1111 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein complement(3129839..3130909) Alicycliphilus denitrificans BC 10105082 YP_004127630.1 CDS Alide_3017 NC_014910.1 3130934 3131422 R KEGG: dia:Dtpsy_1110 signal peptide protein; hypothetical protein complement(3130934..3131422) Alicycliphilus denitrificans BC 10105083 YP_004127631.1 CDS Alide_3018 NC_014910.1 3131596 3133011 R KEGG: aav:Aave_1442 L-glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; glutamine synthetase, type i complement(3131596..3133011) Alicycliphilus denitrificans BC 10105084 YP_004127632.1 CDS Alide_3019 NC_014910.1 3133183 3134004 R PFAM: molybdopterin binding domain; KEGG: ajs:Ajs_1188 molybdopterin binding domain-containing protein; molybdopterin binding domain-containing protein complement(3133183..3134004) Alicycliphilus denitrificans BC 10105085 YP_004127633.1 CDS Alide_3020 NC_014910.1 3134001 3134894 R KEGG: dia:Dtpsy_1107 transmembrane protein; transmembrane protein complement(3134001..3134894) Alicycliphilus denitrificans BC 10105086 YP_004127634.1 CDS Alide_3021 NC_014910.1 3134922 3135947 R PFAM: fatty acid hydroxylase; KEGG: dia:Dtpsy_1106 fatty acid hydroxylase; fatty acid hydroxylase complement(3134922..3135947) Alicycliphilus denitrificans BC 10105087 YP_004127635.1 CDS Alide_3022 NC_014910.1 3135962 3136765 R KEGG: dia:Dtpsy_1105 polysaccharide deacetylase; manually curated; PFAM: polysaccharide deacetylase; polysaccharide deacetylase complement(3135962..3136765) Alicycliphilus denitrificans BC 10105088 YP_004127636.1 CDS Alide_3023 NC_014910.1 3136779 3137744 R KEGG: dia:Dtpsy_1104 hypothetical protein; hypothetical protein complement(3136779..3137744) Alicycliphilus denitrificans BC 10105089 YP_004127637.1 CDS Alide_3024 NC_014910.1 3137852 3138589 R PFAM: pseudouridine synthase; KEGG: ajs:Ajs_1183 ribosomal small subunit pseudouridine synthase A; pseudouridine synthase complement(3137852..3138589) Alicycliphilus denitrificans BC 10105090 YP_004127638.1 CDS Alide_3025 NC_014910.1 3144441 3144965 R PFAM: phosphoribosyltransferase; KEGG: ajs:Ajs_1182 phosphoribosyltransferase; phosphoribosyltransferase complement(3144441..3144965) Alicycliphilus denitrificans BC 10105096 YP_004127639.1 CDS Alide_3026 NC_014910.1 3145037 3146413 R SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: dia:Dtpsy_1101 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; adenylosuccinate synthetase complement(3145037..3146413) Alicycliphilus denitrificans BC 10105097 YP_004127640.1 CDS Alide_3027 NC_014910.1 3146441 3147589 R KEGG: ajs:Ajs_1180 tRNA synthetase, class II (G, H, P and S); TIGRFAM: histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II (G H P and S); histidyl-tRNA synthetase 2 complement(3146441..3147589) Alicycliphilus denitrificans BC 10105098 YP_004127641.1 CDS Alide_3028 NC_014910.1 3147664 3147852 R PFAM: Protein of unknown function DUF2065; KEGG: ajs:Ajs_1179 hypothetical protein; hypothetical protein complement(3147664..3147852) Alicycliphilus denitrificans BC 10105099 YP_004127642.1 CDS Alide_3029 NC_014910.1 3147881 3148795 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: ajs:Ajs_1178 HflC protein; SMART: band 7 protein; hflc protein complement(3147881..3148795) Alicycliphilus denitrificans BC 10105100 YP_004127643.1 CDS Alide_3030 NC_014910.1 3148805 3150181 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: dia:Dtpsy_1097 HflK protein; SMART: band 7 protein; hflk protein complement(3148805..3150181) Alicycliphilus denitrificans BC 10105101 YP_004127644.1 CDS Alide_3031 NC_014910.1 3150234 3151412 R KEGG: ajs:Ajs_1176 small GTP-binding protein; TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; GTP-binding protein HflX complement(3150234..3151412) Alicycliphilus denitrificans BC 10105102 YP_004127645.1 CDS Alide_3032 NC_014910.1 3151477 3151779 R KEGG: dia:Dtpsy_1095 RNA chaperone Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; RNA chaperone hfq complement(3151477..3151779) Alicycliphilus denitrificans BC 10105103 YP_004127646.1 CDS Alide_3033 NC_014910.1 3151803 3153146 R KEGG: dia:Dtpsy_1094 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; ribosome-associated gtpase enga complement(3151803..3153146) Alicycliphilus denitrificans BC 10105104 YP_004127647.1 CDS Alide_3034 NC_014910.1 3153165 3154313 R KEGG: dia:Dtpsy_1093 outer membrane assembly lipoprotein YfgL; TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; outer membrane assembly lipoprotein yfgl complement(3153165..3154313) Alicycliphilus denitrificans BC 10105105 YP_004127648.1 CDS Alide_3035 NC_014910.1 3154310 3154990 R PFAM: Protein of unknown function DUF2133; KEGG: dia:Dtpsy_1092 hypothetical protein; hypothetical protein complement(3154310..3154990) Alicycliphilus denitrificans BC 10105106 YP_004127649.1 CDS Alide_3036 NC_014910.1 3155006 3156295 R TIGRFAM: histidyl-tRNA synthetase; KEGG: dia:Dtpsy_1091 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase complement(3155006..3156295) Alicycliphilus denitrificans BC 10105107 YP_004127650.1 CDS Alide_3037 NC_014910.1 3156378 3157652 R KEGG: dia:Dtpsy_1090 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase complement(3156378..3157652) Alicycliphilus denitrificans BC 10105108 YP_004127651.1 CDS Alide_3038 NC_014910.1 3157653 3158549 R KEGG: dia:Dtpsy_1089 hypothetical protein; hypothetical protein complement(3157653..3158549) Alicycliphilus denitrificans BC 10105109 YP_004127652.1 CDS Alide_3039 NC_014910.1 3158542 3159369 R KEGG: dia:Dtpsy_1088 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; type IV pilus biogenesis/stability protein pilw complement(3158542..3159369) Alicycliphilus denitrificans BC 10105110 YP_004127653.1 CDS Alide_3040 NC_014910.1 3159391 3160515 R KEGG: dia:Dtpsy_1087 radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; radical sam enzyme, cfr family complement(3159391..3160515) Alicycliphilus denitrificans BC 10105111 YP_004127654.1 CDS Alide_3041 NC_014910.1 3160603 3161028 R PFAM: nucleoside diphosphate kinase; KEGG: ajs:Ajs_1166 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase complement(3160603..3161028) Alicycliphilus denitrificans BC 10105112 YP_004127655.1 CDS Alide_3042 NC_014910.1 3161107 3162462 R KEGG: dia:Dtpsy_1085 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; pseudouridine synthase complement(3161107..3162462) Alicycliphilus denitrificans BC 10105113 YP_004127656.1 CDS Alide_3043 NC_014910.1 3162464 3163132 R KEGG: dia:Dtpsy_1084 chromosome segregation and condensation protein, ScpB; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; segregation and condensation protein b complement(3162464..3163132) Alicycliphilus denitrificans BC 10105114 YP_004127657.1 CDS Alide_3044 NC_014910.1 3163301 3164299 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dia:Dtpsy_1083 pseudouridine synthase, RluA family; SMART: RNA-binding S4 domain protein; pseudouridine synthase complement(3163301..3164299) Alicycliphilus denitrificans BC 10105115 YP_004127658.1 CDS Alide_3045 NC_014910.1 3164308 3165210 R KEGG: dia:Dtpsy_1082 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; peptidase m23 complement(3164308..3165210) Alicycliphilus denitrificans BC 10105116 YP_004127659.1 CDS Alide_3046 NC_014910.1 3165222 3165995 R TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: dia:Dtpsy_1081 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-l-isoaspartate o-methyltransferase complement(3165222..3165995) Alicycliphilus denitrificans BC 10105117 YP_004127660.1 CDS Alide_3047 NC_014910.1 3165995 3166816 R KEGG: ajs:Ajs_1160 stationary phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein sure complement(3165995..3166816) Alicycliphilus denitrificans BC 10105118 YP_004127661.1 CDS Alide_3048 NC_014910.1 3166882 3168462 D SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: dia:Dtpsy_1078 diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 3166882..3168462 Alicycliphilus denitrificans BC 10105119 YP_004127662.1 CDS Alide_3049 NC_014910.1 3168489 3170069 D KEGG: dia:Dtpsy_1077 alkaline phosphatase; alkaline phosphatase 3168489..3170069 Alicycliphilus denitrificans BC 10105120 YP_004127663.1 CDS Alide_3050 NC_014910.1 3170106 3171020 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_0788 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3170106..3171020) Alicycliphilus denitrificans BC 10105121 YP_004127664.1 CDS Alide_3051 NC_014910.1 3171133 3172329 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: dac:Daci_0789 FMN-dependent alpha-hydroxy acid dehydrogenase; fmn-dependent alpha-hydroxy acid dehydrogenase 3171133..3172329 Alicycliphilus denitrificans BC 10105122 YP_004127665.1 CDS Alide_3052 NC_014910.1 3172368 3173354 D KEGG: dac:Daci_5118 hypothetical protein; hypothetical protein 3172368..3173354 Alicycliphilus denitrificans BC 10105123 YP_004127666.1 CDS Alide_3055 NC_014910.1 3175196 3176032 R KEGG: bja:bll6360 bifunctional enzyme 2-hydroxyhepta-2,4-diene-1,7-dioatesomerase 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase protein; PFAM: fumarylacetoacetate (FAA) hydrolase; ureidoglycolate lyase complement(3175196..3176032) Alicycliphilus denitrificans BC 10105126 YP_004127667.1 CDS Alide_3056 NC_014910.1 3176150 3176824 D PFAM: regulatory protein TetR; KEGG: bph:Bphy_3516 TetR family transcriptional regulator; regulatory protein tetr 3176150..3176824 Alicycliphilus denitrificans BC 10105127 YP_004127668.1 CDS Alide_3057 NC_014910.1 3177147 3179759 D SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; manually curated; KEGG: dia:Dtpsy_1076 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS III domain protein; MutS IV domain protein; DNA mismatch repair protein muts 3177147..3179759 Alicycliphilus denitrificans BC 10105128 YP_004127669.1 CDS Alide_3058 NC_014910.1 3179772 3181184 R KEGG: dac:Daci_2259 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family complement(3179772..3181184) Alicycliphilus denitrificans BC 10105129 YP_004127670.1 CDS Alide_3059 NC_014910.1 3181187 3184312 R PFAM: acriflavin resistance protein; KEGG: dac:Daci_2258 acriflavin resistance protein; acriflavin resistance protein complement(3181187..3184312) Alicycliphilus denitrificans BC 10105130 YP_004127671.1 CDS Alide_3060 NC_014910.1 3184433 3187549 R PFAM: acriflavin resistance protein; KEGG: dac:Daci_2257 acriflavin resistance protein; acriflavin resistance protein complement(3184433..3187549) Alicycliphilus denitrificans BC 10105131 YP_004127672.1 CDS Alide_3061 NC_014910.1 3187586 3189010 R KEGG: dac:Daci_2256 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; protein of unknown function Spy-related; efflux transporter, rnd family, mfp subunit complement(3187586..3189010) Alicycliphilus denitrificans BC 10105132 YP_004127673.1 CDS Alide_3062 NC_014910.1 3189322 3190134 D PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_1074 alpha/beta hydrolase fold protein; alpha/beta hydrolase 3189322..3190134 Alicycliphilus denitrificans BC 10105133 YP_004127674.1 CDS Alide_3063 NC_014910.1 3190150 3190974 R KEGG: ajs:Ajs_1152 undecaprenyl pyrophosphate phosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase complement(3190150..3190974) Alicycliphilus denitrificans BC 10105134 YP_004127675.1 CDS Alide_3064 NC_014910.1 3191161 3191712 D KEGG: vap:Vapar_3609 hypothetical protein; hypothetical protein 3191161..3191712 Alicycliphilus denitrificans BC 10105135 YP_004127676.1 CDS Alide_3065 NC_014910.1 3191724 3192095 D KEGG: vei:Veis_2284 hypothetical protein; hypothetical protein 3191724..3192095 Alicycliphilus denitrificans BC 10105136 YP_004127677.1 CDS Alide_3066 NC_014910.1 3192105 3193160 D PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: vei:Veis_2283 signal transduction histidine kinase, LytS; histidine kinase internal region protein 3192105..3193160 Alicycliphilus denitrificans BC 10105137 YP_004127678.1 CDS Alide_3067 NC_014910.1 3193129 3193935 D KEGG: dia:Dtpsy_1069 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; lyttr DNA-binding region protein 3193129..3193935 Alicycliphilus denitrificans BC 10105138 YP_004127679.1 CDS Alide_3068 NC_014910.1 3194112 3195317 D PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP2600 hypothetical protein; major facilitator superfamily protein 3194112..3195317 Alicycliphilus denitrificans BC 10105139 YP_004127680.1 CDS Alide_3069 NC_014910.1 3195343 3196581 D PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_1068 major facilitator superfamily MFS_1; major facilitator superfamily protein 3195343..3196581 Alicycliphilus denitrificans BC 10105140 YP_004127681.1 CDS Alide_3070 NC_014910.1 3196633 3197853 R PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_1146 monooxygenase, FAD-binding; FAD-dependent oxidoreductase complement(3196633..3197853) Alicycliphilus denitrificans BC 10105141 YP_004127682.1 CDS Alide_3071 NC_014910.1 3197876 3200782 R KEGG: ajs:Ajs_1145 aconitate hydratase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain-containing protein; aconitate hydratase 1 complement(3197876..3200782) Alicycliphilus denitrificans BC 10105142 YP_004127683.1 CDS Alide_3072 NC_014910.1 3201055 3201351 R KEGG: dia:Dtpsy_1065 histone family protein nucleoid-structuring protein H-NS; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein h-ns complement(3201055..3201351) Alicycliphilus denitrificans BC 10105143 YP_004127684.1 CDS Alide_3073 NC_014910.1 3201667 3202512 D TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: dia:Dtpsy_1064 diadenosine tetraphosphatase; PFAM: metallophosphoesterase; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 3201667..3202512 Alicycliphilus denitrificans BC 10105144 YP_004127685.1 CDS Alide_3074 NC_014910.1 3202614 3203654 R PFAM: ApbE family lipoprotein; KEGG: dia:Dtpsy_1063 ApbE family lipoprotein; apbe family lipoprotein complement(3202614..3203654) Alicycliphilus denitrificans BC 10105145 YP_004127686.1 CDS Alide_3075 NC_014910.1 3203674 3204087 R PFAM: cytochrome c class I; KEGG: dia:Dtpsy_1062 cytochrome c class I; cytochrome c class i complement(3203674..3204087) Alicycliphilus denitrificans BC 10105146 YP_004127687.1 CDS Alide_3076 NC_014910.1 3204315 3204674 D KEGG: dia:Dtpsy_1061 hypothetical protein; hypothetical protein 3204315..3204674 Alicycliphilus denitrificans BC 10105147 YP_004127688.1 CDS Alide_3077 NC_014910.1 3204696 3206630 D KEGG: ajs:Ajs_1139 nitrous-oxide reductase; PFAM: cytochrome c oxidase subunit II; nitrous-oxide reductase 3204696..3206630 Alicycliphilus denitrificans BC 10105148 YP_004127689.1 CDS Alide_3078 NC_014910.1 3206694 3209315 D PFAM: FMN-binding domain protein; KEGG: dia:Dtpsy_1059 FMN-binding domain protein; fmn-binding domain-containing protein 3206694..3209315 Alicycliphilus denitrificans BC 10105149 YP_004127690.1 CDS Alide_3079 NC_014910.1 3209312 3210580 D KEGG: dia:Dtpsy_1058 periplasmic copper-binding; PFAM: periplasmic copper-binding; SMART: Carbohydrate-binding and sugar hydrolysis; Parallel beta-helix repeat; copper-binding protein 3209312..3210580 Alicycliphilus denitrificans BC 10105150 YP_004127691.1 CDS Alide_3080 NC_014910.1 3210555 3211487 D KEGG: dia:Dtpsy_1057 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3210555..3211487 Alicycliphilus denitrificans BC 10105151 YP_004127692.1 CDS Alide_3081 NC_014910.1 3211503 3212318 D KEGG: dia:Dtpsy_1056 ABC transporter; ABC transporter 3211503..3212318 Alicycliphilus denitrificans BC 10105152 YP_004127693.1 CDS Alide_3082 NC_014910.1 3212315 3212851 D KEGG: dia:Dtpsy_1055 NosL family protein; nosl family protein 3212315..3212851 Alicycliphilus denitrificans BC 10105153 YP_004127694.1 CDS Alide_3083 NC_014910.1 3212912 3213511 D KEGG: dia:Dtpsy_1054 hypothetical protein; hypothetical protein 3212912..3213511 Alicycliphilus denitrificans BC 10105154 YP_004127695.1 CDS Alide_3084 NC_014910.1 3213612 3215054 R KEGG: dia:Dtpsy_1053 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; dead/deah box helicase domain-containing protein complement(3213612..3215054) Alicycliphilus denitrificans BC 10105155 YP_004127696.1 CDS Alide_3085 NC_014910.1 3215143 3216006 R PFAM: protein of unknown function zinc metallopeptidase; KEGG: dia:Dtpsy_1052 protein of unknown function zinc metallopeptidase putative; hypothetical protein complement(3215143..3216006) Alicycliphilus denitrificans BC 10105156 YP_004127697.1 CDS Alide_3086 NC_014910.1 3216071 3216637 R TIGRFAM: deoxycytidine triphosphate deaminase; KEGG: dia:Dtpsy_1050 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase complement(3216071..3216637) Alicycliphilus denitrificans BC 10105157 YP_004127698.1 CDS Alide_3087 NC_014910.1 3216755 3217972 R PFAM: protein of unknown function DUF989; KEGG: ajs:Ajs_1128 hypothetical protein; hypothetical protein complement(3216755..3217972) Alicycliphilus denitrificans BC 10105158 YP_004127699.1 CDS Alide_3088 NC_014910.1 3218254 3219087 R TIGRFAM: xanthine dehydrogenase accessory protein XdhC; KEGG: ajs:Ajs_1125 hypothetical protein; xanthine dehydrogenase accessory protein xdhc complement(3218254..3219087) Alicycliphilus denitrificans BC 10105159 YP_004127700.1 CDS Alide_3089 NC_014910.1 3219150 3219677 D KEGG: dia:Dtpsy_1044 hypothetical protein; hypothetical protein 3219150..3219677 Alicycliphilus denitrificans BC 10105160 YP_004127701.1 CDS Alide_3090 NC_014910.1 3219836 3220186 R TIGRFAM: hydroxyisourate hydrolase; KEGG: dia:Dtpsy_1043 hydroxyisourate hydrolase; PFAM: Transthyretin; hydroxyisourate hydrolase complement(3219836..3220186) Alicycliphilus denitrificans BC 10105161 YP_004127702.1 CDS Alide_3091 NC_014910.1 3220329 3222119 D TIGRFAM: gamma-glutamyltransferase; KEGG: dac:Daci_2120 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 3220329..3222119 Alicycliphilus denitrificans BC 10105162 YP_004127703.1 CDS Alide_3092 NC_014910.1 3222116 3222661 R KEGG: dac:Daci_0940 hypothetical protein; hypothetical protein complement(3222116..3222661) Alicycliphilus denitrificans BC 10105163 YP_004127704.1 CDS Alide_3094 NC_014910.1 3223154 3224068 R TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: dac:Daci_2119 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase complement(3223154..3224068) Alicycliphilus denitrificans BC 10105165 YP_004127705.1 CDS Alide_3095 NC_014910.1 3224116 3224916 R TIGRFAM: hydroxypyruvate isomerase; KEGG: ctt:CtCNB1_3709 xylose isomerase-like TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; hydroxypyruvate isomerase complement(3224116..3224916) Alicycliphilus denitrificans BC 10105166 YP_004127706.1 CDS Alide_3096 NC_014910.1 3224946 3226736 R KEGG: dac:Daci_2117 glyoxylate carboligase; TIGRFAM: glyoxylate carboligase; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; glyoxylate carboligase complement(3224946..3226736) Alicycliphilus denitrificans BC 10105167 YP_004127707.1 CDS Alide_3097 NC_014910.1 3226847 3227776 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_2116 LysR family transcriptional regulator; LysR family transcriptional regulator 3226847..3227776 Alicycliphilus denitrificans BC 10105168 YP_004127708.1 CDS Alide_3098 NC_014910.1 3227855 3228745 R KEGG: lch:Lcho_4024 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein complement(3227855..3228745) Alicycliphilus denitrificans BC 10105169 YP_004127709.1 CDS Alide_3099 NC_014910.1 3228797 3230125 R PFAM: aminotransferase class-III; KEGG: bur:Bcep18194_B0665 aminotransferase; aminotransferase class-iii complement(3228797..3230125) Alicycliphilus denitrificans BC 10105170 YP_004127710.1 CDS Alide_3100 NC_014910.1 3230323 3231216 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: tmz:Tmz1t_1334 transcriptional regulator, LysR family; LysR family transcriptional regulator 3230323..3231216 Alicycliphilus denitrificans BC 10105171 YP_004127711.1 CDS Alide_3101 NC_014910.1 3231244 3232566 R KEGG: ajs:Ajs_1122 hydroxypyruvate reductase; PFAM: MOFRL domain protein; hydroxypyruvate reductase complement(3231244..3232566) Alicycliphilus denitrificans BC 10105172 YP_004127712.1 CDS Alide_3102 NC_014910.1 3232645 3233628 R KEGG: dia:Dtpsy_1041 hypothetical protein; hypothetical protein complement(3232645..3233628) Alicycliphilus denitrificans BC 10105173 YP_004127713.1 CDS Alide_3103 NC_014910.1 3233663 3234730 R TIGRFAM: tartrate dehydrogenase; KEGG: ajs:Ajs_1120 tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase complement(3233663..3234730) Alicycliphilus denitrificans BC 10105174 YP_004127714.1 CDS Alide_3104 NC_014910.1 3234857 3235771 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1039 transcriptional regulator, LysR family; LysR family transcriptional regulator 3234857..3235771 Alicycliphilus denitrificans BC 10105175 YP_004127715.1 CDS Alide_3105 NC_014910.1 3235826 3236503 D KEGG: dia:Dtpsy_1038 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3235826..3236503 Alicycliphilus denitrificans BC 10105176 YP_004127716.1 CDS Alide_3106 NC_014910.1 3236500 3237459 D TIGRFAM: urate catabolism protein; KEGG: dia:Dtpsy_1037 urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein 3236500..3237459 Alicycliphilus denitrificans BC 10105177 YP_004127717.1 CDS Alide_3107 NC_014910.1 3237524 3239299 D TIGRFAM: amidase, hydantoinase/carbamoylase family; OHCU decarboxylase; KEGG: ajs:Ajs_1115 bifunctional OHCU decarboxylase/allantoate amidohydrolase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; peptidase M20; peptidase dimerisation domain protein; amidase 3237524..3239299 Alicycliphilus denitrificans BC 10105178 YP_004127718.1 CDS Alide_3108 NC_014910.1 3239296 3240549 D PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: dia:Dtpsy_1035 peptidase dimerisation domain protein; peptidase dimerization domain-containing protein 3239296..3240549 Alicycliphilus denitrificans BC 10105179 YP_004127719.1 CDS Alide_3110 NC_014910.1 3241738 3243213 R KEGG: dia:Dtpsy_2395 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; chemotaxis sensory transducer protein complement(3241738..3243213) Alicycliphilus denitrificans BC 10105181 YP_004127720.1 CDS Alide_3111 NC_014910.1 3243564 3245051 D KEGG: dac:Daci_2107 xanthine permease; TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; xanthine permease 3243564..3245051 Alicycliphilus denitrificans BC 10105182 YP_004127721.1 CDS Alide_3112 NC_014910.1 3245189 3247498 D PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: ajs:Ajs_1112 malic enzyme; malic protein nad-binding protein 3245189..3247498 Alicycliphilus denitrificans BC 10105183 YP_004127722.1 CDS Alide_3113 NC_014910.1 3247568 3248143 R PFAM: YceI family protein; KEGG: dia:Dtpsy_1028 YceI family protein; hypothetical protein complement(3247568..3248143) Alicycliphilus denitrificans BC 10105184 YP_004127723.1 CDS Alide_3114 NC_014910.1 3248198 3248818 R PFAM: YceI family protein; KEGG: dia:Dtpsy_1027 YceI family protein; hypothetical protein complement(3248198..3248818) Alicycliphilus denitrificans BC 10105185 YP_004127724.1 CDS Alide_3115 NC_014910.1 3248815 3249402 R KEGG: dia:Dtpsy_1026 cytochrome b561; cytochrome b561 complement(3248815..3249402) Alicycliphilus denitrificans BC 10105186 YP_004127725.1 CDS Alide_3116 NC_014910.1 3249660 3250349 D KEGG: ajs:Ajs_1106 hypothetical protein; hypothetical protein 3249660..3250349 Alicycliphilus denitrificans BC 10105187 YP_004127726.1 CDS Alide_3117 NC_014910.1 3250527 3251015 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dia:Dtpsy_2562 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 3250527..3251015 Alicycliphilus denitrificans BC 10105188 YP_004127727.1 CDS Alide_3118 NC_014910.1 3251172 3252911 D KEGG: dia:Dtpsy_2563 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; phoh family protein 3251172..3252911 Alicycliphilus denitrificans BC 10105189 YP_004127728.1 CDS Alide_3119 NC_014910.1 3252983 3254515 R PFAM: Aldehyde Dehydrogenase; KEGG: bpd:BURPS668_A2080 piperideine-6-carboxylate dehydrogenase; aldehyde dehydrogenase complement(3252983..3254515) Alicycliphilus denitrificans BC 10105190 YP_004127729.1 CDS Alide_3120 NC_014910.1 3254586 3256064 R TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: dia:Dtpsy_2565 replicative DNA helicase; SMART: AAA ATPase; replicative DNA helicase complement(3254586..3256064) Alicycliphilus denitrificans BC 10105191 YP_004127730.1 CDS Alide_3121 NC_014910.1 3256186 3256638 R KEGG: dia:Dtpsy_2566 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like; 50S ribosomal protein L9 complement(3256186..3256638) Alicycliphilus denitrificans BC 10105192 YP_004127731.1 CDS Alide_3122 NC_014910.1 3256653 3256934 R KEGG: aav:Aave_1230 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; 30S ribosomal protein S18 complement(3256653..3256934) Alicycliphilus denitrificans BC 10105193 YP_004127732.1 CDS Alide_3123 NC_014910.1 3256953 3257243 R PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dia:Dtpsy_2568 primosomal replication protein; single-strand binding protein/primosomal replication protein n complement(3256953..3257243) Alicycliphilus denitrificans BC 10105194 YP_004127733.1 CDS Alide_3124 NC_014910.1 3257266 3257640 R KEGG: dia:Dtpsy_2569 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; 30S ribosomal protein S6 complement(3257266..3257640) Alicycliphilus denitrificans BC 10105195 YP_004127734.1 CDS Alide_3125 NC_014910.1 3257876 3258418 D PFAM: GrpE protein; KEGG: dia:Dtpsy_2570 heat shock protein GrpE; heat shock protein GrpE 3257876..3258418 Alicycliphilus denitrificans BC 10105196 YP_004127735.1 CDS Alide_3126 NC_014910.1 3258511 3260454 D KEGG: dia:Dtpsy_2571 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; molecular chaperone DnaK 3258511..3260454 Alicycliphilus denitrificans BC 10105197 YP_004127736.1 CDS Alide_3127 NC_014910.1 3260550 3261683 D TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; KEGG: dia:Dtpsy_2572 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein; molecular chaperone DnaJ 3260550..3261683 Alicycliphilus denitrificans BC 10105198 YP_004127737.1 CDS Alide_3128 NC_014910.1 3261898 3262563 D PFAM: protein of unknown function DUF1555; KEGG: maq:Maqu_1010 hypothetical protein; hypothetical protein 3261898..3262563 Alicycliphilus denitrificans BC 10105199 YP_004127738.1 CDS Alide_3129 NC_014910.1 3262636 3264006 R KEGG: rfr:Rfer_2475 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; tryptophanase complement(3262636..3264006) Alicycliphilus denitrificans BC 10105200 YP_004127739.1 CDS Alide_3130 NC_014910.1 3264205 3265326 D PFAM: peptidase U32; KEGG: ajs:Ajs_3220 peptidase U32; peptidase u32 3264205..3265326 Alicycliphilus denitrificans BC 10105201 YP_004127740.1 CDS Alide_3131 NC_014910.1 3265332 3266255 D PFAM: peptidase U32; KEGG: ajs:Ajs_3221 peptidase U32; peptidase u32 3265332..3266255 Alicycliphilus denitrificans BC 10105202 YP_004127741.1 CDS Alide_3132 NC_014910.1 3266275 3266793 D PFAM: Sterol-binding domain protein; KEGG: ajs:Ajs_3222 hypothetical protein; sterol-binding domain-containing protein 3266275..3266793 Alicycliphilus denitrificans BC 10105203 YP_004127742.1 CDS Alide_3133 NC_014910.1 3266790 3267197 D PFAM: DGC domain protein; KEGG: ajs:Ajs_3223 hypothetical protein; dgc domain-containing protein 3266790..3267197 Alicycliphilus denitrificans BC 10105204 YP_004127743.1 CDS Alide_3134 NC_014910.1 3267194 3267778 D KEGG: dia:Dtpsy_2577 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3267194..3267778 Alicycliphilus denitrificans BC 10105205 YP_004127744.1 CDS Alide_3135 NC_014910.1 3267834 3269318 D KEGG: ajs:Ajs_3225 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; ubid family decarboxylase 3267834..3269318 Alicycliphilus denitrificans BC 10105206 YP_004127745.1 CDS Alide_3136 NC_014910.1 3269337 3270485 D PFAM: cytochrome P450; KEGG: ajs:Ajs_3226 cytochrome P450; cytochrome p450 3269337..3270485 Alicycliphilus denitrificans BC 10105207 YP_004127746.1 CDS Alide_3137 NC_014910.1 3270526 3271890 D PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dia:Dtpsy_2580 beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase 3270526..3271890 Alicycliphilus denitrificans BC 10105208 YP_004127747.1 CDS Alide_3138 NC_014910.1 3272079 3273017 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_2581 transcriptional regulator, LysR family; LysR family transcriptional regulator 3272079..3273017 Alicycliphilus denitrificans BC 10105209 YP_004127748.1 CDS Alide_3139 NC_014910.1 3273038 3274459 D KEGG: ajs:Ajs_3229 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase large subunit 3273038..3274459 Alicycliphilus denitrificans BC 10105210 YP_004127749.1 CDS Alide_3140 NC_014910.1 3274483 3274608 D PFAM: Entericidin EcnAB; KEGG: dac:Daci_5236 entericidin EcnAB; entericidin A/B 3274483..3274608 Alicycliphilus denitrificans BC 10105211 YP_004127750.1 CDS Alide_3141 NC_014910.1 3274632 3275282 D KEGG: dia:Dtpsy_2585 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase small subunit 3274632..3275282 Alicycliphilus denitrificans BC 10105212 YP_004127751.1 CDS Alide_3142 NC_014910.1 3275357 3276427 D TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: dia:Dtpsy_2586 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3275357..3276427 Alicycliphilus denitrificans BC 10105213 YP_004127752.1 CDS Alide_3143 NC_014910.1 3276697 3277809 D TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: ctt:CtCNB1_1004 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase 3276697..3277809 Alicycliphilus denitrificans BC 10105214 YP_004127753.1 CDS Alide_3144 NC_014910.1 3278032 3280704 D TIGRFAM: FimV N-terminal domain; FimV C-terminal domain; KEGG: ajs:Ajs_3236 transmembrane protein; fimv n-terminal domain-containing protein 3278032..3280704 Alicycliphilus denitrificans BC 10105215 YP_004127754.1 CDS Alide_3145 NC_014910.1 3280769 3281587 D KEGG: dia:Dtpsy_2590 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase a 3280769..3281587 Alicycliphilus denitrificans BC 10105216 YP_004127755.1 CDS Alide_3146 NC_014910.1 3281584 3282300 D KEGG: ajs:Ajs_3238 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 3281584..3282300 Alicycliphilus denitrificans BC 10105217 YP_004127756.1 CDS Alide_3147 NC_014910.1 3282301 3283569 D KEGG: ajs:Ajs_3239 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 3282301..3283569 Alicycliphilus denitrificans BC 10105218 YP_004127757.1 CDS Alide_3148 NC_014910.1 3283566 3284375 D TIGRFAM: tryptophan synthase, alpha subunit; KEGG: ajs:Ajs_3240 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 3283566..3284375 Alicycliphilus denitrificans BC 10105219 YP_004127758.1 CDS Alide_3149 NC_014910.1 3284404 3285276 D KEGG: ajs:Ajs_3241 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: carboxyl transferase; acetyl-CoA carboxylase, carboxyl transferase subunit beta 3284404..3285276 Alicycliphilus denitrificans BC 10105220 YP_004127759.1 CDS Alide_3150 NC_014910.1 3285353 3285901 R PFAM: protein of unknown function YGGT; KEGG: dia:Dtpsy_2595 protein of unknown function YGGT; hypothetical protein complement(3285353..3285901) Alicycliphilus denitrificans BC 10105221 YP_004127760.1 CDS Alide_3151 NC_014910.1 3285995 3286630 D KEGG: vei:Veis_4864 peptidase S16, lon domain-containing protein; PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; peptidase s16 lon domain-containing protein 3285995..3286630 Alicycliphilus denitrificans BC 10105222 YP_004127761.1 CDS Alide_3152 NC_014910.1 3286667 3288568 D PFAM: polysaccharide biosynthesis protein CapD; KEGG: pol:Bpro_3983 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein capd 3286667..3288568 Alicycliphilus denitrificans BC 10105223 YP_004127762.1 CDS Alide_3153 NC_014910.1 3288565 3289797 D PFAM: polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein; polysaccharide biosynthesis protein 3288565..3289797 Alicycliphilus denitrificans BC 10105224 YP_004127763.1 CDS Alide_3154 NC_014910.1 3289781 3290383 D KEGG: bpt:Bpet1526 acetyltransferase; acetyltransferase 3289781..3290383 Alicycliphilus denitrificans BC 10105225 YP_004127764.1 CDS Alide_3155 NC_014910.1 3290385 3291434 D PFAM: glycosyl transferase group 1; KEGG: bpt:Bpet1525 glycosyltransferase; group 1 glycosyl transferase 3290385..3291434 Alicycliphilus denitrificans BC 10105226 YP_004127765.1 CDS Alide_3156 NC_014910.1 3291431 3292459 D PFAM: glycosyl transferase family 2; KEGG: bpt:Bpet1524 glycosyltransferase; family 2 glycosyl transferase 3291431..3292459 Alicycliphilus denitrificans BC 10105227 YP_004127766.1 CDS Alide_3157 NC_014910.1 3292456 3293151 D PFAM: Methyltransferase type 11; KEGG: mpt:Mpe_A0605 hypothetical protein; type 11 methyltransferase 3292456..3293151 Alicycliphilus denitrificans BC 10105228 YP_004127767.1 CDS Alide_3158 NC_014910.1 3293148 3294320 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mpt:Mpe_A0607 lipopolysaccharide biosynthesis protein; degt/dnrj/eryc1/strs aminotransferase 3293148..3294320 Alicycliphilus denitrificans BC 10105229 YP_004127768.1 CDS Alide_3159 NC_014910.1 3294327 3294953 D PFAM: sugar transferase; KEGG: lch:Lcho_0300 sugar transferase; sugar transferase 3294327..3294953 Alicycliphilus denitrificans BC 10105230 YP_004127769.1 CDS Alide_3160 NC_014910.1 3294993 3296540 D TIGRFAM: lysyl-tRNA synthetase; KEGG: ajs:Ajs_3250 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; lysyl-tRNA synthetase 3294993..3296540 Alicycliphilus denitrificans BC 10105231 YP_004127770.1 CDS Alide_3161 NC_014910.1 3296537 3297199 D PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_3252 small-conductance mechanosensitive channel-like protein; mscs mechanosensitive ion channel 3296537..3297199 Alicycliphilus denitrificans BC 10105232 YP_004127771.1 CDS Alide_3162 NC_014910.1 3297392 3298510 D PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_4331 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 3297392..3298510 Alicycliphilus denitrificans BC 10105233 YP_004127772.1 CDS Alide_3163 NC_014910.1 3298631 3299557 D PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2607 inner-membrane translocator; inner-membrane translocator 3298631..3299557 Alicycliphilus denitrificans BC 10105234 YP_004127773.1 CDS Alide_3164 NC_014910.1 3299557 3300816 D PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2608 leucine/isoleucine/valine transporter permease subunit; inner-membrane translocator 3299557..3300816 Alicycliphilus denitrificans BC 10105235 YP_004127774.1 CDS Alide_3165 NC_014910.1 3300816 3301589 D KEGG: dac:Daci_4334 leucine/isoleucine/valine transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3300816..3301589 Alicycliphilus denitrificans BC 10105236 YP_004127775.1 CDS Alide_3166 NC_014910.1 3301589 3302299 D KEGG: dia:Dtpsy_2610 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3301589..3302299 Alicycliphilus denitrificans BC 10105237 YP_004127776.1 CDS Alide_3167 NC_014910.1 3302380 3303447 R PFAM: phosphofructokinase; KEGG: ajs:Ajs_3260 6-phosphofructokinase; phosphofructokinase complement(3302380..3303447) Alicycliphilus denitrificans BC 10105238 YP_004127777.1 CDS Alide_3168 NC_014910.1 3303444 3304526 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: dia:Dtpsy_2614 beta-N-acetylhexosaminidase; glycoside hydrolase family protein complement(3303444..3304526) Alicycliphilus denitrificans BC 10105239 YP_004127778.1 CDS Alide_3169 NC_014910.1 3304591 3304983 R KEGG: dia:Dtpsy_2615 4'-phosphopantetheinyl transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-(acyl-carrier-protein) synthase complement(3304591..3304983) Alicycliphilus denitrificans BC 10105240 YP_004127779.1 CDS Alide_3170 NC_014910.1 3305041 3305808 R TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: dia:Dtpsy_2616 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein pdxj complement(3305041..3305808) Alicycliphilus denitrificans BC 10105241 YP_004127780.1 CDS Alide_3171 NC_014910.1 3305805 3306578 R KEGG: ajs:Ajs_3265 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; DNA repair protein reco complement(3305805..3306578) Alicycliphilus denitrificans BC 10105242 YP_004127781.1 CDS Alide_3172 NC_014910.1 3306800 3307741 R KEGG: dia:Dtpsy_2619 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; GTP-binding protein Era complement(3306800..3307741) Alicycliphilus denitrificans BC 10105243 YP_004127782.1 CDS Alide_3173 NC_014910.1 3307810 3308496 R SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: ajs:Ajs_3267 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease iii complement(3307810..3308496) Alicycliphilus denitrificans BC 10105244 YP_004127783.1 CDS Alide_3174 NC_014910.1 3308499 3308864 R KEGG: dia:Dtpsy_2621 transmembrane protein; transmembrane protein complement(3308499..3308864) Alicycliphilus denitrificans BC 10105245 YP_004127784.1 CDS Alide_3175 NC_014910.1 3308878 3309852 R KEGG: dia:Dtpsy_2622 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region; signal peptidase i complement(3308878..3309852) Alicycliphilus denitrificans BC 10105246 YP_004127785.1 CDS Alide_3176 NC_014910.1 3309859 3311667 R KEGG: dia:Dtpsy_2623 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein LepA complement(3309859..3311667) Alicycliphilus denitrificans BC 10105247 YP_004127786.1 CDS Alide_3177 NC_014910.1 3312092 3313573 R SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: dia:Dtpsy_2624 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(3312092..3313573) Alicycliphilus denitrificans BC 10105248 YP_004127787.1 CDS Alide_3178 NC_014910.1 3313683 3314681 R KEGG: dia:Dtpsy_2625 sigma E regulatory protein, MucB/RseB; manually curated; PFAM: MucB/RseB family protein; mucb/rseb family protein complement(3313683..3314681) Alicycliphilus denitrificans BC 10105249 YP_004127788.1 CDS Alide_3179 NC_014910.1 3314792 3315442 R PFAM: Anti sigma-E protein RseA family protein; KEGG: dia:Dtpsy_2626 anti sigma-E protein, RseA; anti sigma-e protein rsea family protein complement(3314792..3315442) Alicycliphilus denitrificans BC 10105250 YP_004127789.1 CDS Alide_3180 NC_014910.1 3315467 3316102 R KEGG: dia:Dtpsy_2627 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; RNA polymerase sigma factor rpoe complement(3315467..3316102) Alicycliphilus denitrificans BC 10105251 YP_004127790.1 CDS Alide_3181 NC_014910.1 3316099 3316620 R KEGG: dia:Dtpsy_2628 hypothetical protein; hypothetical protein complement(3316099..3316620) Alicycliphilus denitrificans BC 10105252 YP_004127791.1 CDS Alide_3182 NC_014910.1 3316683 3317927 R KEGG: dia:Dtpsy_2629 3-oxoacyl-(acyl-carrier-protein) synthase 2; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; 3-oxoacyl-ACP synthase complement(3316683..3317927) Alicycliphilus denitrificans BC 10105253 YP_004127792.1 CDS Alide_3183 NC_014910.1 3317986 3318225 R KEGG: ctt:CtCNB1_0973 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; acyl carrier protein complement(3317986..3318225) Alicycliphilus denitrificans BC 10105254 YP_004127793.1 CDS Alide_3184 NC_014910.1 3318329 3319066 R KEGG: dia:Dtpsy_2631 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase complement(3318329..3319066) Alicycliphilus denitrificans BC 10105255 YP_004127794.1 CDS Alide_3185 NC_014910.1 3319063 3320016 R KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase complement(3319063..3320016) Alicycliphilus denitrificans BC 10105256 YP_004127795.1 CDS Alide_3186 NC_014910.1 3320078 3321058 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: dia:Dtpsy_2633 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase complement(3320078..3321058) Alicycliphilus denitrificans BC 10105257 YP_004127796.1 CDS Alide_3187 NC_014910.1 3321080 3322111 R manually curated; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; KEGG: dia:Dtpsy_2634 glycerol-3-phosphate acyltransferase PlsX; PFAM: fatty acid synthesis plsX protein; fatty acid/phospholipid synthesis protein PlsX complement(3321080..3322111) Alicycliphilus denitrificans BC 10105258 YP_004127797.1 CDS Alide_3188 NC_014910.1 3322234 3322416 R KEGG: aav:Aave_1181 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; 50S ribosomal protein L32 complement(3322234..3322416) Alicycliphilus denitrificans BC 10105259 YP_004127798.1 CDS Alide_3189 NC_014910.1 3322553 3323104 R PFAM: protein of unknown function DUF177; KEGG: dia:Dtpsy_2636 protein of unknown function DUF177; hypothetical protein complement(3322553..3323104) Alicycliphilus denitrificans BC 10105260 YP_004127799.1 CDS Alide_3190 NC_014910.1 3323131 3323730 D KEGG: dia:Dtpsy_2637 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 3323131..3323730 Alicycliphilus denitrificans BC 10105261 YP_004127800.1 CDS Alide_3191 NC_014910.1 3323727 3324512 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dia:Dtpsy_2638 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase 3323727..3324512 Alicycliphilus denitrificans BC 10105262 YP_004127801.1 CDS Alide_3192 NC_014910.1 3324517 3325557 R PFAM: peptidase S49; KEGG: dia:Dtpsy_2639 peptidase S49; peptidase s49 complement(3324517..3325557) Alicycliphilus denitrificans BC 10105263 YP_004127802.1 CDS Alide_3193 NC_014910.1 3325562 3325933 R PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: dia:Dtpsy_2640 Rieske (2Fe-2S) domain protein; rieske (2fe-2S) iron-sulfur domain-containing protein complement(3325562..3325933) Alicycliphilus denitrificans BC 10105264 YP_004127803.1 CDS Alide_3194 NC_014910.1 3325936 3326607 R KEGG: dia:Dtpsy_2641 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase complement(3325936..3326607) Alicycliphilus denitrificans BC 10105265 YP_004127804.1 CDS Alide_3195 NC_014910.1 3326600 3327619 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; Zinc finger, FLYWCH-type; KEGG: dia:Dtpsy_2642 pseudouridine synthase, RluA family; SMART: RNA-binding S4 domain protein; pseudouridine synthase complement(3326600..3327619) Alicycliphilus denitrificans BC 10105266 YP_004127805.1 CDS Alide_3196 NC_014910.1 3328209 3331277 D KEGG: ajs:Ajs_3290 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; ribonuclease, rne/rng family 3328209..3331277 Alicycliphilus denitrificans BC 10105267 YP_004127806.1 CDS Alide_3197 NC_014910.1 3331436 3332209 D PFAM: protein of unknown function DUF328; KEGG: dia:Dtpsy_2644 hypothetical protein; hypothetical protein 3331436..3332209 Alicycliphilus denitrificans BC 10105268 YP_004127807.1 CDS Alide_3198 NC_014910.1 3332206 3333060 D PFAM: 2OG-Fe(II) oxygenase; KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; procollagen-proline dioxygenase 3332206..3333060 Alicycliphilus denitrificans BC 10105269 YP_004127808.1 CDS Alide_3199 NC_014910.1 3333116 3333961 D TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: ajs:Ajs_3294 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; 7-cyano-7-deazaguanine reductase 3333116..3333961 Alicycliphilus denitrificans BC 10105270 YP_004127809.1 CDS Alide_3200 NC_014910.1 3333991 3335553 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; KEGG: dia:Dtpsy_2648 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAC repeat-containing protein; pas sensor protein complement(3333991..3335553) Alicycliphilus denitrificans BC 10105271 YP_004127810.1 CDS Alide_3201 NC_014910.1 3335715 3336908 R KEGG: aav:Aave_1964 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase complement(3335715..3336908) Alicycliphilus denitrificans BC 10105272 YP_004127811.1 CDS Alide_3202 NC_014910.1 3336984 3337877 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbr:BB0984 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3336984..3337877) Alicycliphilus denitrificans BC 10105273 YP_004127812.1 CDS Alide_3203 NC_014910.1 3338014 3338982 D KEGG: bbr:BB0983 hypothetical protein; hypothetical protein 3338014..3338982 Alicycliphilus denitrificans BC 10105274 YP_004127813.1 CDS Alide_3204 NC_014910.1 3339013 3340239 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB0982 hypothetical protein; l-carnitine dehydratase/bile acid-inducible protein f 3339013..3340239 Alicycliphilus denitrificans BC 10105275 YP_004127814.1 CDS Alide_3205 NC_014910.1 3340276 3342114 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB0981 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3340276..3342114 Alicycliphilus denitrificans BC 10105276 YP_004127815.1 CDS Alide_3206 NC_014910.1 3342127 3343059 R KEGG: dia:Dtpsy_2650 hypothetical protein; hypothetical protein complement(3342127..3343059) Alicycliphilus denitrificans BC 10105277 YP_004127816.1 CDS Alide_3207 NC_014910.1 3343232 3344404 R KEGG: ajs:Ajs_3298 (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; l-lactate dehydrogenase (cytochrome) complement(3343232..3344404) Alicycliphilus denitrificans BC 10105278 YP_004127817.1 CDS Alide_3208 NC_014910.1 3344496 3345011 R PFAM: OmpA/MotB domain protein; KEGG: dac:Daci_3484 OmpA/MotB domain-containing protein; ompa/motb domain-containing protein complement(3344496..3345011) Alicycliphilus denitrificans BC 10105279 YP_004127818.1 CDS Alide_3209 NC_014910.1 3345008 3346240 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dac:Daci_3483 diguanylate cyclase; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein; diguanylate cyclase complement(3345008..3346240) Alicycliphilus denitrificans BC 10105280 YP_004127819.1 CDS Alide_3210 NC_014910.1 3346261 3346782 R KEGG: dac:Daci_3482 hypothetical protein; hypothetical protein complement(3346261..3346782) Alicycliphilus denitrificans BC 10105281 YP_004127820.1 CDS Alide_3211 NC_014910.1 3346847 3349012 R TIGRFAM: penicillin-binding protein 1C; KEGG: ajs:Ajs_3299 penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; penicillin-binding protein 1c complement(3346847..3349012) Alicycliphilus denitrificans BC 10105282 YP_004127821.1 CDS Alide_3212 NC_014910.1 3349012 3349893 R KEGG: dia:Dtpsy_2653 hypothetical protein; hypothetical protein complement(3349012..3349893) Alicycliphilus denitrificans BC 10105283 YP_004127822.1 CDS Alide_3213 NC_014910.1 3350218 3351465 R KEGG: bbr:BB0464 dehydratase/racemase; dehydratase/racemase complement(3350218..3351465) Alicycliphilus denitrificans BC 10105284 YP_004127823.1 CDS Alide_3214 NC_014910.1 3351599 3353248 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: app:CAP2UW1_2497 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(3351599..3353248) Alicycliphilus denitrificans BC 10105285 YP_004127824.1 CDS Alide_3215 NC_014910.1 3353245 3355344 R PFAM: CoA-binding domain protein; KEGG: dac:Daci_1885 CoA-binding domain-containing protein; CoA-binding protein complement(3353245..3355344) Alicycliphilus denitrificans BC 10105286 YP_004127825.1 CDS Alide_3216 NC_014910.1 3355344 3356501 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rme:Rmet_5425 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(3355344..3356501) Alicycliphilus denitrificans BC 10105287 YP_004127826.1 CDS Alide_3217 NC_014910.1 3356541 3357536 R KEGG: mms:mma_1624 L-asparaginase; PFAM: Asparaginase/glutaminase; asparaginase complement(3356541..3357536) Alicycliphilus denitrificans BC 10105288 YP_004127827.1 CDS Alide_3218 NC_014910.1 3357544 3358536 R KEGG: vap:Vapar_4821 hypothetical protein; hypothetical protein complement(3357544..3358536) Alicycliphilus denitrificans BC 10105289 YP_004127828.1 CDS Alide_3219 NC_014910.1 3358669 3359550 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2067 LysR family transcriptional regulator; LysR family transcriptional regulator 3358669..3359550 Alicycliphilus denitrificans BC 10105290 YP_004127829.1 CDS Alide_3220 NC_014910.1 3359657 3360739 R PFAM: metallophosphoesterase; KEGG: dac:Daci_4972 metallophosphoesterase; metallophosphoesterase complement(3359657..3360739) Alicycliphilus denitrificans BC 10105291 YP_004127830.1 CDS Alide_3221 NC_014910.1 3360774 3366710 R PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: dia:Dtpsy_2661 alpha-2-macroglobulin domain protein; alpha-2-macroglobulin complement(3360774..3366710) Alicycliphilus denitrificans BC 10105292 YP_004127831.1 CDS Alide_3222 NC_014910.1 3366842 3367816 R KEGG: ajs:Ajs_3311 hypothetical protein; hypothetical protein complement(3366842..3367816) Alicycliphilus denitrificans BC 10105293 YP_004127832.1 CDS Alide_3223 NC_014910.1 3367834 3369294 R KEGG: dia:Dtpsy_2664 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; argininosuccinate lyase complement(3367834..3369294) Alicycliphilus denitrificans BC 10105294 YP_004127833.1 CDS Alide_3224 NC_014910.1 3369345 3370409 D PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: ajs:Ajs_3313 histidine kinase internal region; histidine kinase internal region protein 3369345..3370409 Alicycliphilus denitrificans BC 10105295 YP_004127834.1 CDS Alide_3225 NC_014910.1 3370546 3371331 D KEGG: dia:Dtpsy_2507 lipoprotein, YaeC family; TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; lipoprotein, yaec family 3370546..3371331 Alicycliphilus denitrificans BC 10105296 YP_004127835.1 CDS Alide_3226 NC_014910.1 3371458 3373089 R PFAM: SpoVR family protein; KEGG: dac:Daci_2329 SpoVR family protein; spovr family protein complement(3371458..3373089) Alicycliphilus denitrificans BC 10105297 YP_004127836.1 CDS Alide_3227 NC_014910.1 3373086 3374354 R PFAM: protein of unknown function DUF444; KEGG: dac:Daci_2328 hypothetical protein; hypothetical protein complement(3373086..3374354) Alicycliphilus denitrificans BC 10105298 YP_004127837.1 CDS Alide_3228 NC_014910.1 3374399 3376321 R KEGG: ctt:CtCNB1_1949 serine protein kinase, PrkA; PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; prka aaa domain-containing protein complement(3374399..3376321) Alicycliphilus denitrificans BC 10105299 YP_004127838.1 CDS Alide_3229 NC_014910.1 3376622 3377113 R KEGG: dia:Dtpsy_2510 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; rrf2 family transcriptional regulator complement(3376622..3377113) Alicycliphilus denitrificans BC 10105300 YP_004127839.1 CDS Alide_3230 NC_014910.1 3377208 3377930 D KEGG: dia:Dtpsy_2511 hemerythrin HHE cation binding domain protein; TIGRFAM: iron-sulfur cluster repair di-iron protein; PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; iron-sulfur cluster repair di-iron protein 3377208..3377930 Alicycliphilus denitrificans BC 10105301 YP_004127840.1 CDS Alide_3231 NC_014910.1 3377933 3378304 D KEGG: aav:Aave_1570 globin-like protein; globin-like protein 3377933..3378304 Alicycliphilus denitrificans BC 10105302 YP_004127841.1 CDS Alide_3232 NC_014910.1 3378301 3378525 R KEGG: dia:Dtpsy_2512 hypothetical protein; hypothetical protein complement(3378301..3378525) Alicycliphilus denitrificans BC 10105303 YP_004127842.1 CDS Alide_3233 NC_014910.1 3378525 3378965 R KEGG: ajs:Ajs_3166 hypothetical protein; hypothetical protein complement(3378525..3378965) Alicycliphilus denitrificans BC 10105304 YP_004127843.1 CDS Alide_3234 NC_014910.1 3378968 3379969 R PFAM: aldo/keto reductase; KEGG: ajs:Ajs_3167 aldo/keto reductase; aldo/keto reductase complement(3378968..3379969) Alicycliphilus denitrificans BC 10105305 YP_004127844.1 CDS Alide_3235 NC_014910.1 3380047 3380247 R KEGG: dia:Dtpsy_2515 SlyX family protein; slyx family protein complement(3380047..3380247) Alicycliphilus denitrificans BC 10105306 YP_004127845.1 CDS Alide_3236 NC_014910.1 3380249 3381442 R PFAM: aminotransferase class I and II; KEGG: aav:Aave_1563 GntR family transcriptional regulator; aminotransferase class i and ii complement(3380249..3381442) Alicycliphilus denitrificans BC 10105307 YP_004127846.1 CDS Alide_3237 NC_014910.1 3381595 3382065 D PFAM: transcription activator effector binding; KEGG: dac:Daci_3099 AraC family transcriptional regulator; transcription activator effector binding protein 3381595..3382065 Alicycliphilus denitrificans BC 10105308 YP_004127847.1 CDS Alide_3238 NC_014910.1 3382062 3383048 R KEGG: dac:Daci_2828 hypothetical protein; hypothetical protein complement(3382062..3383048) Alicycliphilus denitrificans BC 10105309 YP_004127848.1 CDS Alide_3239 NC_014910.1 3383083 3384546 R PFAM: Amidase; KEGG: dac:Daci_2827 amidase; amidase complement(3383083..3384546) Alicycliphilus denitrificans BC 10105310 YP_004127849.1 CDS Alide_3240 NC_014910.1 3384657 3385610 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_2826 LysR family transcriptional regulator; LysR family transcriptional regulator 3384657..3385610 Alicycliphilus denitrificans BC 10105311 YP_004127850.1 CDS Alide_3241 NC_014910.1 3385607 3386245 D SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: ajs:Ajs_3170 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease iii 3385607..3386245 Alicycliphilus denitrificans BC 10105312 YP_004127851.1 CDS Alide_3242 NC_014910.1 3386262 3386765 R KEGG: pag:PLES_35831 hypothetical protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; appr-1-p processing domain-containing protein complement(3386262..3386765) Alicycliphilus denitrificans BC 10105313 YP_004127852.1 CDS Alide_3243 NC_014910.1 3386855 3387913 R TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: ajs:Ajs_3176 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(3386855..3387913) Alicycliphilus denitrificans BC 10105314 YP_004127853.1 CDS Alide_3244 NC_014910.1 3387972 3389444 R KEGG: ajs:Ajs_3178 adenosylcobyric acid synthase (glutamine-hydrolysing); TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyric acid synthase cobq complement(3387972..3389444) Alicycliphilus denitrificans BC 10105315 YP_004127854.1 CDS Alide_3245 NC_014910.1 3389441 3390427 R PFAM: aminotransferase class I and II; KEGG: dia:Dtpsy_2532 aminotransferase class I and II; aminotransferase class i and ii complement(3389441..3390427) Alicycliphilus denitrificans BC 10105316 YP_004127855.1 CDS Alide_3246 NC_014910.1 3390420 3391394 R KEGG: ajs:Ajs_3180 adenosylcobinamide-phosphate synthase; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein cobd complement(3390420..3391394) Alicycliphilus denitrificans BC 10105317 YP_004127856.1 CDS Alide_3247 NC_014910.1 3391603 3392109 D KEGG: ajs:Ajs_3182 type-4 fimbrial pilin related signal peptide protein; type-4 fimbrial pilin-like protein 3391603..3392109 Alicycliphilus denitrificans BC 10105318 YP_004127857.1 CDS Alide_3248 NC_014910.1 3392116 3392757 D TIGRFAM: type IV pilus modification protein PilV; KEGG: dac:Daci_5194 type IV pilus modification protein PilV; type IV pilus modification protein pilv 3392116..3392757 Alicycliphilus denitrificans BC 10105319 YP_004127858.1 CDS Alide_3249 NC_014910.1 3392760 3393635 D KEGG: dac:Daci_5195 hypothetical protein; hypothetical protein 3392760..3393635 Alicycliphilus denitrificans BC 10105320 YP_004127859.1 CDS Alide_3250 NC_014910.1 3393647 3394396 D KEGG: dac:Daci_5196 hypothetical protein; hypothetical protein 3393647..3394396 Alicycliphilus denitrificans BC 10105321 YP_004127860.1 CDS Alide_3251 NC_014910.1 3394488 3398225 D KEGG: dac:Daci_5197 FG-GAP repeat-containing protein; hypothetical protein 3394488..3398225 Alicycliphilus denitrificans BC 10105322 YP_004127861.1 CDS Alide_3252 NC_014910.1 3398236 3398670 D KEGG: dia:Dtpsy_2540 fimbrial protein pilin; fimbrial protein pilin 3398236..3398670 Alicycliphilus denitrificans BC 10105323 YP_004127862.1 CDS Alide_3253 NC_014910.1 3398708 3399820 D TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: dia:Dtpsy_2542 riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein ribd 3398708..3399820 Alicycliphilus denitrificans BC 10105324 YP_004127863.1 CDS Alide_3254 NC_014910.1 3399844 3401454 D KEGG: dia:Dtpsy_2543 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; phospholipase d/transphosphatidylase 3399844..3401454 Alicycliphilus denitrificans BC 10105325 YP_004127864.1 CDS Alide_3255 NC_014910.1 3401414 3402433 R PFAM: dihydrouridine synthase DuS; KEGG: dia:Dtpsy_2544 dihydrouridine synthase DuS; dihydrouridine synthase dus complement(3401414..3402433) Alicycliphilus denitrificans BC 10105326 YP_004127865.1 CDS Alide_3256 NC_014910.1 3402489 3403628 R PFAM: methyltransferase small; KEGG: aav:Aave_1253 methyltransferase small; methyltransferase small complement(3402489..3403628) Alicycliphilus denitrificans BC 10105327 YP_004127866.1 CDS Alide_3257 NC_014910.1 3403654 3404175 R KEGG: dia:Dtpsy_2546 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase complement(3403654..3404175) Alicycliphilus denitrificans BC 10105328 YP_004127867.1 CDS Alide_3258 NC_014910.1 3404252 3405712 R PFAM: Aldehyde Dehydrogenase; KEGG: dia:Dtpsy_2547 aldehyde dehydrogenase; aldehyde dehydrogenase complement(3404252..3405712) Alicycliphilus denitrificans BC 10105329 YP_004127868.1 CDS Alide_3259 NC_014910.1 3405832 3406194 R KEGG: dia:Dtpsy_2549 hypothetical protein; hypothetical protein complement(3405832..3406194) Alicycliphilus denitrificans BC 10105330 YP_004127869.1 CDS Alide_3260 NC_014910.1 3406210 3408813 R TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: dia:Dtpsy_2550 ATP-dependent chaperone ClpB; SMART: AAA ATPase; ATP-dependent chaperone clpb complement(3406210..3408813) Alicycliphilus denitrificans BC 10105331 YP_004127870.1 CDS Alide_3261 NC_014910.1 3408881 3409357 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ajs:Ajs_3199 molybdopterin synthase subunit MoaE; molybdopterin biosynthesis moae protein complement(3408881..3409357) Alicycliphilus denitrificans BC 10105332 YP_004127871.1 CDS Alide_3262 NC_014910.1 3409414 3409668 D KEGG: dia:Dtpsy_2552 hypothetical protein; hypothetical protein 3409414..3409668 Alicycliphilus denitrificans BC 10105333 YP_004127872.1 CDS Alide_3263 NC_014910.1 3409781 3409924 D KEGG: dia:Dtpsy_2553 hypothetical protein; hypothetical protein 3409781..3409924 Alicycliphilus denitrificans BC 10105334 YP_004127873.1 CDS Alide_3264 NC_014910.1 3410007 3410318 D KEGG: dia:Dtpsy_2554 hypothetical protein; hypothetical protein 3410007..3410318 Alicycliphilus denitrificans BC 10105335 YP_004127874.1 CDS Alide_3265 NC_014910.1 3410583 3411485 D KEGG: dac:Daci_5213 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 3410583..3411485 Alicycliphilus denitrificans BC 10105336 YP_004127875.1 CDS Alide_3266 NC_014910.1 3411472 3411732 R KEGG: dia:Dtpsy_2555 molybdopterin converting factor, subunit 1; TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; molybdopterin converting factor subunit 1 complement(3411472..3411732) Alicycliphilus denitrificans BC 10105337 YP_004127876.1 CDS Alide_3267 NC_014910.1 3411729 3412976 R KEGG: ajs:Ajs_3203 molybdenum cofactor synthesis domain-containing protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV; molybdenum cofactor synthesis domain-containing protein complement(3411729..3412976) Alicycliphilus denitrificans BC 10105338 YP_004127877.1 CDS Alide_3268 NC_014910.1 3412973 3413524 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; KEGG: dia:Dtpsy_2557 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein b complement(3412973..3413524) Alicycliphilus denitrificans BC 10105339 YP_004127878.1 CDS Alide_3269 NC_014910.1 3413598 3415028 R TIGRFAM: threonine synthase; KEGG: dia:Dtpsy_2558 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase complement(3413598..3415028) Alicycliphilus denitrificans BC 10105340 YP_004127879.1 CDS Alide_3270 NC_014910.1 3415039 3415467 R PFAM: PilT protein domain protein; KEGG: geo:Geob_1146 PilT protein domain protein; twitching motility protein PilT complement(3415039..3415467) Alicycliphilus denitrificans BC 10105341 YP_004127880.1 CDS Alide_3271 NC_014910.1 3415473 3415736 R TIGRFAM: prevent-host-death family protein; KEGG: bts:Btus_3191 prevent-host-death family protein; prevent-host-death family protein complement(3415473..3415736) Alicycliphilus denitrificans BC 10105342 YP_004127881.1 CDS Alide_3272 NC_014910.1 3415780 3417114 R KEGG: ajs:Ajs_3206 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; homoserine dehydrogenase complement(3415780..3417114) Alicycliphilus denitrificans BC 10105343 YP_004127882.1 CDS Alide_3273 NC_014910.1 3417186 3418418 R PFAM: aminotransferase class I and II; KEGG: dia:Dtpsy_2560 aminotransferase AlaT; aminotransferase class i and ii complement(3417186..3418418) Alicycliphilus denitrificans BC 10105344 YP_004127883.1 CDS Alide_3274 NC_014910.1 3418537 3418908 D PFAM: protein of unknown function DUF498; KEGG: dia:Dtpsy_2561 protein of unknown function DUF498; hypothetical protein 3418537..3418908 Alicycliphilus denitrificans BC 10105345 YP_004127884.1 CDS Alide_3275 NC_014910.1 3419665 3420621 R KEGG: vap:Vapar_5507 hypothetical protein; hypothetical protein complement(3419665..3420621) Alicycliphilus denitrificans BC 10105347 YP_004127885.1 CDS Alide_3276 NC_014910.1 3420836 3421984 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rme:Rmet_5530 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3420836..3421984 Alicycliphilus denitrificans BC 10105348 YP_004127886.1 CDS Alide_3277 NC_014910.1 3421993 3423108 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reh:H16_B0372 pimeloyl-CoA dehydrogenase (small subunit); acyl-CoA dehydrogenase 3421993..3423108 Alicycliphilus denitrificans BC 10105349 YP_004127887.1 CDS Alide_3278 NC_014910.1 3423416 3424348 R PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha complement(3423416..3424348) Alicycliphilus denitrificans BC 10105350 YP_004127888.1 CDS Alide_3279 NC_014910.1 3424363 3425112 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_2299 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunits alpha/beta complement(3424363..3425112) Alicycliphilus denitrificans BC 10105351 YP_004127889.1 CDS Alide_3280 NC_014910.1 3425159 3426136 R KEGG: vap:Vapar_1676 hypothetical protein; hypothetical protein complement(3425159..3426136) Alicycliphilus denitrificans BC 10105352 YP_004127890.1 CDS Alide_3281 NC_014910.1 3426153 3427337 R TIGRFAM: acetyl-CoA acetyltransferase; KEGG: vap:Vapar_0843 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase complement(3426153..3427337) Alicycliphilus denitrificans BC 10105353 YP_004127891.1 CDS Alide_3282 NC_014910.1 3427352 3427753 R PFAM: protein of unknown function DUF35; KEGG: bbr:BB4332 hypothetical protein; hypothetical protein complement(3427352..3427753) Alicycliphilus denitrificans BC 10105354 YP_004127892.1 CDS Alide_3283 NC_014910.1 3427755 3428885 R KEGG: vei:Veis_4266 hypothetical protein; hypothetical protein complement(3427755..3428885) Alicycliphilus denitrificans BC 10105355 YP_004127893.1 CDS Alide_3284 NC_014910.1 3428888 3429664 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_C0267 short chain enoyl-CoA hydratase; enoyl-CoA hydratase complement(3428888..3429664) Alicycliphilus denitrificans BC 10105356 YP_004127894.1 CDS Alide_3285 NC_014910.1 3429681 3430847 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: fal:FRAAL3384 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(3429681..3430847) Alicycliphilus denitrificans BC 10105357 YP_004127895.1 CDS Alide_3286 NC_014910.1 3431018 3433171 D PFAM: CoA-binding domain protein; ATP-grasp domain protein; KEGG: reu:Reut_B4556 CoA-binding; CoA-binding protein 3431018..3433171 Alicycliphilus denitrificans BC 10105358 YP_004127896.1 CDS Alide_3287 NC_014910.1 3433168 3433572 D PFAM: protein of unknown function DUF35; KEGG: rpc:RPC_1073 hypothetical protein; hypothetical protein 3433168..3433572 Alicycliphilus denitrificans BC 10105359 YP_004127897.1 CDS Alide_3288 NC_014910.1 3433569 3434726 D KEGG: rpc:RPC_1074 thiolase; thiolase 3433569..3434726 Alicycliphilus denitrificans BC 10105360 YP_004127898.1 CDS Alide_3289 NC_014910.1 3434779 3435552 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_0344 enoyl-CoA hydratase; enoyl-CoA hydratase complement(3434779..3435552) Alicycliphilus denitrificans BC 10105361 YP_004127899.1 CDS Alide_3290 NC_014910.1 3435642 3437750 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: rme:Rmet_5110 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 3435642..3437750 Alicycliphilus denitrificans BC 10105362 YP_004127900.1 CDS Alide_3293 NC_014910.1 3438822 3439679 R KEGG: gct:GC56T3_1469 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; transcriptional regulator iclr complement(3438822..3439679) Alicycliphilus denitrificans BC 10105365 YP_004127901.1 CDS Alide_3294 NC_014910.1 3439717 3440862 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase complement(3439717..3440862) Alicycliphilus denitrificans BC 10105366 YP_004127902.1 CDS Alide_3295 NC_014910.1 3440871 3442037 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(3440871..3442037) Alicycliphilus denitrificans BC 10105367 YP_004127903.1 CDS Alide_3296 NC_014910.1 3442046 3442855 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_0321 1,4-dihydroxy-2-naphthoate synthase; enoyl-CoA hydratase complement(3442046..3442855) Alicycliphilus denitrificans BC 10105368 YP_004127904.1 CDS Alide_3297 NC_014910.1 3442928 3443497 D KEGG: vap:Vapar_5494 gamma-BHC dehydrochlorinase; gamma-bhc dehydrochlorinase 3442928..3443497 Alicycliphilus denitrificans BC 10105369 YP_004127905.1 CDS Alide_3298 NC_014910.1 3443599 3444594 D KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein 3443599..3444594 Alicycliphilus denitrificans BC 10105370 YP_004127906.1 CDS Alide_3299 NC_014910.1 3444684 3445409 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azl:AZL_d00150 3-hydroxybutyrate dehydrogenase; short-chain dehydrogenase/reductase sdr 3444684..3445409 Alicycliphilus denitrificans BC 10105371 YP_004127907.1 CDS Alide_3300 NC_014910.1 3445441 3446685 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pag:PLES_04421 acyl-CoA transferase; l-carnitine dehydratase/bile acid-inducible protein f 3445441..3446685 Alicycliphilus denitrificans BC 10105372 YP_004127908.1 CDS Alide_3301 NC_014910.1 3446719 3447480 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_4672 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase sdr 3446719..3447480 Alicycliphilus denitrificans BC 10105373 YP_004127909.1 CDS Alide_3302 NC_014910.1 3447511 3448263 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ara:Arad_7507 3-oxoacyl-(acyl-carrier-protein) reductase protein; short-chain dehydrogenase/reductase sdr complement(3447511..3448263) Alicycliphilus denitrificans BC 10105374 YP_004127910.1 CDS Alide_3303 NC_014910.1 3448275 3449462 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pde:Pden_3227 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f complement(3448275..3449462) Alicycliphilus denitrificans BC 10105375 YP_004127911.1 CDS Alide_3304 NC_014910.1 3449693 3450658 D KEGG: reh:H16_B0202 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein 3449693..3450658 Alicycliphilus denitrificans BC 10105376 YP_004127912.1 CDS Alide_3305 NC_014910.1 3450731 3451801 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gbm:Gbem_2134 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 3450731..3451801 Alicycliphilus denitrificans BC 10105377 YP_004127913.1 CDS Alide_3306 NC_014910.1 3451862 3452557 D PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2354 methyltransferase type 11; type 11 methyltransferase 3451862..3452557 Alicycliphilus denitrificans BC 10105378 YP_004127914.1 CDS Alide_3307 NC_014910.1 3452554 3453066 R KEGG: dia:Dtpsy_1019 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; methylated-DNA--protein-cysteine methyltransferase complement(3452554..3453066) Alicycliphilus denitrificans BC 10105379 YP_004127915.1 CDS Alide_3308 NC_014910.1 3453173 3453742 R TIGRFAM: cob(I)alamin adenosyltransferase; KEGG: ctt:CtCNB1_1848 cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(i)alamin adenosyltransferase complement(3453173..3453742) Alicycliphilus denitrificans BC 10105380 YP_004127916.1 CDS Alide_3309 NC_014910.1 3453766 3454542 R manually curated; PFAM: ABC transporter related; KEGG: dia:Dtpsy_1017 ABC transporter related; SMART: AAA ATPase; ABC transporter complement(3453766..3454542) Alicycliphilus denitrificans BC 10105381 YP_004127917.1 CDS Alide_3310 NC_014910.1 3454539 3455582 R PFAM: transport system permease protein; KEGG: dia:Dtpsy_1016 transport system permease protein; transport system permease complement(3454539..3455582) Alicycliphilus denitrificans BC 10105382 YP_004127918.1 CDS Alide_3311 NC_014910.1 3455579 3456478 R PFAM: periplasmic binding protein; KEGG: dia:Dtpsy_1015 periplasmic binding protein; periplasmic binding protein complement(3455579..3456478) Alicycliphilus denitrificans BC 10105383 YP_004127919.1 CDS Alide_3312 NC_014910.1 3456475 3457059 R KEGG: dia:Dtpsy_1014 cobalbumin biosynthesis protein; PFAM: cobalbumin biosynthesis protein; adenosylcobinamide-phosphate guanylyltransferase complement(3456475..3457059) Alicycliphilus denitrificans BC 10105384 YP_004127920.1 CDS Alide_3313 NC_014910.1 3457121 3458473 R PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: dia:Dtpsy_1013 CobB/CobQ domain protein glutamine amidotransferase; cobb/cobq domain-containing glutamine amidotransferase complement(3457121..3458473) Alicycliphilus denitrificans BC 10105385 YP_004127921.1 CDS Alide_3314 NC_014910.1 3458475 3460268 R PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: aav:Aave_1537 TonB-dependent receptor; tonb-dependent receptor plug complement(3458475..3460268) Alicycliphilus denitrificans BC 10105386 YP_004127922.1 CDS Alide_3315 NC_014910.1 3460696 3460935 D KEGG: ajs:Ajs_1095 hypothetical protein; hypothetical protein 3460696..3460935 Alicycliphilus denitrificans BC 10105387 YP_004127923.1 CDS Alide_3316 NC_014910.1 3460932 3461288 D PFAM: protein of unknown function DUF710; KEGG: dia:Dtpsy_1010 protein of unknown function DUF710; hypothetical protein 3460932..3461288 Alicycliphilus denitrificans BC 10105388 YP_004127924.1 CDS Alide_3317 NC_014910.1 3461544 3464024 R TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: dac:Daci_2786 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase complement(3461544..3464024) Alicycliphilus denitrificans BC 10105390 YP_004127925.1 CDS Alide_3318 NC_014910.1 3464021 3465268 R TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: aav:Aave_1533 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(3464021..3465268) Alicycliphilus denitrificans BC 10105391 YP_004127926.1 CDS Alide_3319 NC_014910.1 3465429 3466151 R KEGG: ajs:Ajs_1093 hypothetical protein; hypothetical protein complement(3465429..3466151) Alicycliphilus denitrificans BC 10105392 YP_004127927.1 CDS Alide_3320 NC_014910.1 3466155 3467537 R TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; KEGG: dia:Dtpsy_1008 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen iii oxidase complement(3466155..3467537) Alicycliphilus denitrificans BC 10105393 YP_004127928.1 CDS Alide_3321 NC_014910.1 3467708 3468451 D KEGG: ajs:Ajs_1091 CRP/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; cyclic nucleotide-binding protein 3467708..3468451 Alicycliphilus denitrificans BC 10105394 YP_004127929.1 CDS Alide_3322 NC_014910.1 3468486 3468773 R KEGG: dia:Dtpsy_1006 hypothetical protein; hypothetical protein complement(3468486..3468773) Alicycliphilus denitrificans BC 10105395 YP_004127930.1 CDS Alide_3323 NC_014910.1 3468861 3469139 R KEGG: dia:Dtpsy_1005 hypothetical protein; hypothetical protein complement(3468861..3469139) Alicycliphilus denitrificans BC 10105396 YP_004127931.1 CDS Alide_3324 NC_014910.1 3469199 3470641 R TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG; cytochrome c oxidase accessory protein ccog complement(3469199..3470641) Alicycliphilus denitrificans BC 10105397 YP_004127932.1 CDS Alide_3325 NC_014910.1 3470726 3471646 R KEGG: ajs:Ajs_1087 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; cytochrome c oxidase, cbb3-type, subunit iii complement(3470726..3471646) Alicycliphilus denitrificans BC 10105398 YP_004127933.1 CDS Alide_3326 NC_014910.1 3471676 3471813 R KEGG: dia:Dtpsy_1002 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase component complement(3471676..3471813) Alicycliphilus denitrificans BC 10105399 YP_004127934.1 CDS Alide_3327 NC_014910.1 3471834 3472466 R KEGG: dia:Dtpsy_1001 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase, cbb3-type, subunit ii complement(3471834..3472466) Alicycliphilus denitrificans BC 10105400 YP_004127935.1 CDS Alide_3328 NC_014910.1 3472486 3473925 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: dia:Dtpsy_1000 cbb3-type cytochrome c oxidase subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase, cbb3-type, subunit i complement(3472486..3473925) Alicycliphilus denitrificans BC 10105401 YP_004127936.1 CDS Alide_3329 NC_014910.1 3473992 3474129 R KEGG: dia:Dtpsy_0999 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; cbb3-type cytochrome oxidase maturation protein complement(3473992..3474129) Alicycliphilus denitrificans BC 10105402 YP_004127937.1 CDS Alide_3330 NC_014910.1 3474132 3476468 R KEGG: dia:Dtpsy_0998 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase complement(3474132..3476468) Alicycliphilus denitrificans BC 10105403 YP_004127938.1 CDS Alide_3331 NC_014910.1 3476631 3477074 D PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_0997 UspA domain protein; uspa domain-containing protein 3476631..3477074 Alicycliphilus denitrificans BC 10105404 YP_004127939.1 CDS Alide_3332 NC_014910.1 3477184 3478737 R PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_0996 malonyl-CoA synthase; AMP-dependent synthetase/ligase complement(3477184..3478737) Alicycliphilus denitrificans BC 10105405 YP_004127940.1 CDS Alide_3333 NC_014910.1 3478748 3479569 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_1079 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase complement(3478748..3479569) Alicycliphilus denitrificans BC 10105406 YP_004127941.1 CDS Alide_3334 NC_014910.1 3479579 3480601 R KEGG: dia:Dtpsy_0994 hypothetical protein; hypothetical protein complement(3479579..3480601) Alicycliphilus denitrificans BC 10105407 YP_004127942.1 CDS Alide_3335 NC_014910.1 3480665 3482092 R KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase; malonyl-CoA decarboxylase complement(3480665..3482092) Alicycliphilus denitrificans BC 10105408 YP_004127943.1 CDS Alide_3336 NC_014910.1 3482089 3482757 R KEGG: dia:Dtpsy_0992 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(3482089..3482757) Alicycliphilus denitrificans BC 10105409 YP_004127944.1 CDS Alide_3337 NC_014910.1 3482966 3483781 R KEGG: dia:Dtpsy_0991 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(3482966..3483781) Alicycliphilus denitrificans BC 10105410 YP_004127945.1 CDS Alide_3338 NC_014910.1 3483881 3484348 D KEGG: dia:Dtpsy_0990 bacterioferritin; TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; bacterioferritin 3483881..3484348 Alicycliphilus denitrificans BC 10105411 YP_004127946.1 CDS Alide_3339 NC_014910.1 3484351 3484779 R PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_0989 thioesterase superfamily protein; thioesterase superfamily protein complement(3484351..3484779) Alicycliphilus denitrificans BC 10105412 YP_004127947.1 CDS Alide_3340 NC_014910.1 3484920 3486776 R TIGRFAM: dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0988 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase complement(3484920..3486776) Alicycliphilus denitrificans BC 10105413 YP_004127948.1 CDS Alide_3341 NC_014910.1 3487005 3488696 D TIGRFAM: dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0987 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 3487005..3488696 Alicycliphilus denitrificans BC 10105414 YP_004127949.1 CDS Alide_3342 NC_014910.1 3488721 3488963 R KEGG: dia:Dtpsy_0986 hypothetical protein; hypothetical protein complement(3488721..3488963) Alicycliphilus denitrificans BC 10105415 YP_004127950.1 CDS Alide_3343 NC_014910.1 3489071 3489373 D PFAM: cytochrome c class I; KEGG: dia:Dtpsy_0985 cytochrome c class I; cytochrome c class i 3489071..3489373 Alicycliphilus denitrificans BC 10105416 YP_004127951.1 CDS Alide_3344 NC_014910.1 3489502 3490188 R TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; KEGG: dia:Dtpsy_2754 lipoprotein releasing system, ATP-binding protein; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein complement(3489502..3490188) Alicycliphilus denitrificans BC 10105417 YP_004127952.1 CDS Alide_3345 NC_014910.1 3490181 3491434 R KEGG: dia:Dtpsy_2755 lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; lipoprotein releasing system transmembrane protein complement(3490181..3491434) Alicycliphilus denitrificans BC 10105418 YP_004127953.1 CDS Alide_3346 NC_014910.1 3491529 3492479 D PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: dia:Dtpsy_2757 hypothetical protein; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 3491529..3492479 Alicycliphilus denitrificans BC 10105419 YP_004127954.1 CDS Alide_3347 NC_014910.1 3492476 3494191 D KEGG: ajs:Ajs_3424 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; single-stranded-DNA-specific exonuclease recj 3492476..3494191 Alicycliphilus denitrificans BC 10105420 YP_004127955.1 CDS Alide_3348 NC_014910.1 3494252 3496027 R KEGG: dia:Dtpsy_2762 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein complement(3494252..3496027) Alicycliphilus denitrificans BC 10105421 YP_004127956.1 CDS Alide_3349 NC_014910.1 3496198 3497079 D manually curated; PFAM: PHP domain protein; KEGG: dia:Dtpsy_2763 PHP domain protein; SMART: phosphoesterase PHP domain protein; php domain-containing protein 3496198..3497079 Alicycliphilus denitrificans BC 10105422 YP_004127957.1 CDS Alide_3350 NC_014910.1 3497085 3497720 D KEGG: dia:Dtpsy_2764 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; sua5/ycio/yrdc/ywlc family protein 3497085..3497720 Alicycliphilus denitrificans BC 10105423 YP_004127958.1 CDS Alide_3351 NC_014910.1 3497805 3498980 R KEGG: dac:Daci_5413 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; chemotaxis sensory transducer protein complement(3497805..3498980) Alicycliphilus denitrificans BC 10105424 YP_004127959.1 CDS Alide_3352 NC_014910.1 3499322 3500029 D PFAM: peptidase M50; KEGG: dia:Dtpsy_2770 peptidase M50; peptidase m50 3499322..3500029 Alicycliphilus denitrificans BC 10105425 YP_004127960.1 CDS Alide_3353 NC_014910.1 3500041 3501342 D TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: dia:Dtpsy_2771 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 3500041..3501342 Alicycliphilus denitrificans BC 10105426 YP_004127961.1 CDS Alide_3354 NC_014910.1 3501545 3502276 D KEGG: ctt:CtCNB1_0831 two component transcriptional regulator, winged; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 3501545..3502276 Alicycliphilus denitrificans BC 10105427 YP_004127962.1 CDS Alide_3355 NC_014910.1 3502400 3504052 D KEGG: dac:Daci_5417 peptidoglycan-binding LysM; PFAM: FecR protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; fecr protein 3502400..3504052 Alicycliphilus denitrificans BC 10105428 YP_004127963.1 CDS Alide_3356 NC_014910.1 3504093 3506399 D KEGG: dac:Daci_5418 histidine kinase; PFAM: CHASE2 domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; chase2 domain-containing protein 3504093..3506399 Alicycliphilus denitrificans BC 10105429 YP_004127964.1 CDS Alide_3357 NC_014910.1 3506436 3507830 R TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: rfr:Rfer_0702 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase; sugar transferase, pep-cterm system associated complement(3506436..3507830) Alicycliphilus denitrificans BC 10105430 YP_004127965.1 CDS Alide_3358 NC_014910.1 3508013 3509950 R KEGG: rfr:Rfer_0701 hypothetical protein; hypothetical protein complement(3508013..3509950) Alicycliphilus denitrificans BC 10105431 YP_004127966.1 CDS Alide_3359 NC_014910.1 3510218 3511159 R KEGG: dac:Daci_5376 hypothetical protein; hypothetical protein complement(3510218..3511159) Alicycliphilus denitrificans BC 10105433 YP_004127967.1 CDS Alide_3360 NC_014910.1 3511216 3512532 R TIGRFAM: seryl-tRNA synthetase; KEGG: dia:Dtpsy_2772 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase complement(3511216..3512532) Alicycliphilus denitrificans BC 10105434 YP_004127968.1 CDS Alide_3361 NC_014910.1 3512585 3513262 D KEGG: aav:Aave_3769 CBS domain-containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; CBS domain-containing protein 3512585..3513262 Alicycliphilus denitrificans BC 10105435 YP_004127969.1 CDS Alide_3362 NC_014910.1 3513284 3514612 R PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: ajs:Ajs_3447 hypothetical protein; hypothetical protein complement(3513284..3514612) Alicycliphilus denitrificans BC 10105436 YP_004127970.1 CDS Alide_3363 NC_014910.1 3514820 3515776 R TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: ajs:Ajs_3448 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase complement(3514820..3515776) Alicycliphilus denitrificans BC 10105437 YP_004127971.1 CDS Alide_3364 NC_014910.1 3515781 3516257 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dia:Dtpsy_2776 peptidylprolyl isomerase FKBP-type; peptidylprolyl isomerase fkbp-type complement(3515781..3516257) Alicycliphilus denitrificans BC 10105438 YP_004127972.1 CDS Alide_3365 NC_014910.1 3516339 3517052 D KEGG: ajs:Ajs_3450 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein radc 3516339..3517052 Alicycliphilus denitrificans BC 10105439 YP_004127973.1 CDS Alide_3366 NC_014910.1 3517049 3518209 D KEGG: dia:Dtpsy_2778 hypothetical protein; hypothetical protein 3517049..3518209 Alicycliphilus denitrificans BC 10105440 YP_004127974.1 CDS Alide_3367 NC_014910.1 3518206 3518856 D KEGG: dia:Dtpsy_2779 Smr protein/MutS2; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; smr protein/muts2 3518206..3518856 Alicycliphilus denitrificans BC 10105441 YP_004127975.1 CDS Alide_3368 NC_014910.1 3518954 3519922 D KEGG: reu:Reut_B4844 hypothetical protein; hypothetical protein 3518954..3519922 Alicycliphilus denitrificans BC 10105442 YP_004127976.1 CDS Alide_3369 NC_014910.1 3519919 3521199 D KEGG: reu:Reut_B4843 3-isopropylmalate dehydratase large subunit; TIGRFAM: homoaconitate hydratase family protein; PFAM: aconitate hydratase domain-containing protein; homoaconitate hydratase family protein 3519919..3521199 Alicycliphilus denitrificans BC 10105443 YP_004127977.1 CDS Alide_3370 NC_014910.1 3521196 3521765 D KEGG: reu:Reut_B4842 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase small subunit 3521196..3521765 Alicycliphilus denitrificans BC 10105444 YP_004127978.1 CDS Alide_3371 NC_014910.1 3521762 3522616 D PFAM: isocitrate lyase and phosphorylmutase; KEGG: reu:Reut_B4841 2,3-dimethylmalate lyase; isocitrate lyase and phosphorylmutase 3521762..3522616 Alicycliphilus denitrificans BC 10105445 YP_004127979.1 CDS Alide_3372 NC_014910.1 3522710 3523468 D KEGG: reu:Reut_B4840 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; ubic transcription regulator-associated domain-containing protein 3522710..3523468 Alicycliphilus denitrificans BC 10105446 YP_004127980.1 CDS Alide_3373 NC_014910.1 3523518 3523955 R PFAM: globin; KEGG: ajs:Ajs_3454 globin; globin complement(3523518..3523955) Alicycliphilus denitrificans BC 10105447 YP_004127981.1 CDS Alide_3374 NC_014910.1 3523955 3524347 R KEGG: dia:Dtpsy_2782 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator complement(3523955..3524347) Alicycliphilus denitrificans BC 10105448 YP_004127982.1 CDS Alide_3375 NC_014910.1 3524391 3525947 R KEGG: ajs:Ajs_3456 hypothetical protein; hypothetical protein complement(3524391..3525947) Alicycliphilus denitrificans BC 10105449 YP_004127983.1 CDS Alide_3376 NC_014910.1 3526001 3526228 R KEGG: dia:Dtpsy_2784 hypothetical protein; hypothetical protein complement(3526001..3526228) Alicycliphilus denitrificans BC 10105450 YP_004127984.1 CDS Alide_3377 NC_014910.1 3526231 3528762 R PFAM: protein of unknown function DUF214; KEGG: dia:Dtpsy_2785 protein of unknown function DUF214; hypothetical protein complement(3526231..3528762) Alicycliphilus denitrificans BC 10105451 YP_004127985.1 CDS Alide_3378 NC_014910.1 3528772 3529638 R PFAM: formate dehydrogenase subunit FdhD; KEGG: dia:Dtpsy_2786 formate dehydrogenase subunit FdhD; formate dehydrogenase subunit fdhd complement(3528772..3529638) Alicycliphilus denitrificans BC 10105452 YP_004127986.1 CDS Alide_3379 NC_014910.1 3529718 3530038 R KEGG: dia:Dtpsy_2787 hypothetical protein; hypothetical protein complement(3529718..3530038) Alicycliphilus denitrificans BC 10105453 YP_004127987.1 CDS Alide_3380 NC_014910.1 3530035 3531231 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: ajs:Ajs_3461 formate dehydrogenase gamma subunit; formate dehydrogenase subunit gamma complement(3530035..3531231) Alicycliphilus denitrificans BC 10105454 YP_004127988.1 CDS Alide_3381 NC_014910.1 3531245 3531478 R KEGG: dia:Dtpsy_2789 lipoprotein; lipoprotein complement(3531245..3531478) Alicycliphilus denitrificans BC 10105455 YP_004127989.1 CDS Alide_3382 NC_014910.1 3531475 3532095 R KEGG: dia:Dtpsy_2790 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(3531475..3532095) Alicycliphilus denitrificans BC 10105456 YP_004127990.1 CDS Alide_3383 NC_014910.1 3532123 3535095 R PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: dia:Dtpsy_2791 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(3532123..3535095) Alicycliphilus denitrificans BC 10105457 YP_004127991.1 CDS Alide_3384 NC_014910.1 3535117 3535329 R TIGRFAM: formate dehydrogenase region TAT target; KEGG: dia:Dtpsy_2792 formate dehydrogenase region TAT target; formate dehydrogenase region tat target complement(3535117..3535329) Alicycliphilus denitrificans BC 10105458 YP_004127992.1 CDS Alide_3385 NC_014910.1 3535465 3536100 R KEGG: dia:Dtpsy_2793 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone tord family protein complement(3535465..3536100) Alicycliphilus denitrificans BC 10105459 YP_004127993.1 CDS Alide_3386 NC_014910.1 3536097 3538196 R manually curated; KEGG: ajs:Ajs_3467 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin complement(3536097..3538196) Alicycliphilus denitrificans BC 10105460 YP_004127994.1 CDS Alide_3387 NC_014910.1 3538120 3538728 R KEGG: ajs:Ajs_3468 hypothetical protein; hypothetical protein complement(3538120..3538728) Alicycliphilus denitrificans BC 10105461 YP_004127995.1 CDS Alide_3388 NC_014910.1 3538721 3539284 R KEGG: dia:Dtpsy_2796 hypothetical protein; hypothetical protein complement(3538721..3539284) Alicycliphilus denitrificans BC 10105462 YP_004127996.1 CDS Alide_3389 NC_014910.1 3539295 3542156 R KEGG: dia:Dtpsy_2797 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; ferredoxin; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha complement(3539295..3542156) Alicycliphilus denitrificans BC 10105463 YP_004127997.1 CDS Alide_3390 NC_014910.1 3542153 3544054 R PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: dia:Dtpsy_2798 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; respiratory-chain NADH dehydrogenase 51 kda subunit complement(3542153..3544054) Alicycliphilus denitrificans BC 10105464 YP_004127998.1 CDS Alide_3391 NC_014910.1 3544168 3544974 R PFAM: HpcH/HpaI aldolase; KEGG: bpy:Bphyt_0618 citrate (pro-3S)-lyase; hpch/hpai aldolase complement(3544168..3544974) Alicycliphilus denitrificans BC 10105465 YP_004127999.1 CDS Alide_3392 NC_014910.1 3545005 3546207 R PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_4176 major facilitator transporter; major facilitator superfamily protein complement(3545005..3546207) Alicycliphilus denitrificans BC 10105466 YP_004128000.1 CDS Alide_3393 NC_014910.1 3546204 3547019 R KEGG: bpt:Bpet0853 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain-containing protein; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(3546204..3547019) Alicycliphilus denitrificans BC 10105467 YP_004128001.1 CDS Alide_3394 NC_014910.1 3547016 3548245 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet0852 hypothetical protein; l-carnitine dehydratase/bile acid-inducible protein f complement(3547016..3548245) Alicycliphilus denitrificans BC 10105468 YP_004128002.1 CDS Alide_3395 NC_014910.1 3548242 3549414 R KEGG: bpt:Bpet0851 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein; isovaleryl-CoA dehydrogenase complement(3548242..3549414) Alicycliphilus denitrificans BC 10105469 YP_004128003.1 CDS Alide_3396 NC_014910.1 3549411 3550862 R PFAM: MmgE/PrpD family protein; KEGG: bpt:Bpet0850 hypothetical protein; mmge/prpd family protein complement(3549411..3550862) Alicycliphilus denitrificans BC 10105470 YP_004128004.1 CDS Alide_3397 NC_014910.1 3550870 3551850 R KEGG: vap:Vapar_0801 hypothetical protein; hypothetical protein complement(3550870..3551850) Alicycliphilus denitrificans BC 10105471 YP_004128005.1 CDS Alide_3398 NC_014910.1 3551900 3552403 R PFAM: MaoC domain protein dehydratase; KEGG: bpt:Bpet0844 hypothetical protein; MaoC domain-containing protein complement(3551900..3552403) Alicycliphilus denitrificans BC 10105472 YP_004128006.1 CDS Alide_3399 NC_014910.1 3552589 3553680 R PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; KEGG: ajs:Ajs_3476 hypothetical protein; chromosome partitioning protein ParA complement(3552589..3553680) Alicycliphilus denitrificans BC 10105473 YP_004128007.1 CDS Alide_3400 NC_014910.1 3553747 3554820 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: dia:Dtpsy_2801 C4-dicarboxylate transporter/malic acid transport protein; c4-dicarboxylate transporter/malic acid transport protein complement(3553747..3554820) Alicycliphilus denitrificans BC 10105474 YP_004128008.1 CDS Alide_3401 NC_014910.1 3554817 3555878 R KEGG: ajs:Ajs_3479 selenophosphate synthase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; selenide, water dikinase complement(3554817..3555878) Alicycliphilus denitrificans BC 10105475 YP_004128009.1 CDS Alide_3402 NC_014910.1 3555937 3556986 D KEGG: dia:Dtpsy_2803 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; tRNA 2-selenouridine synthase 3555937..3556986 Alicycliphilus denitrificans BC 10105476 YP_004128010.1 CDS Alide_3403 NC_014910.1 3557173 3557748 D PFAM: restriction endonuclease; KEGG: dia:Dtpsy_2804 restriction endonuclease; restriction endonuclease 3557173..3557748 Alicycliphilus denitrificans BC 10105477 YP_004128011.1 CDS Alide_3404 NC_014910.1 3557773 3559014 D PFAM: Patatin; KEGG: dia:Dtpsy_2805 patatin; patatin 3557773..3559014 Alicycliphilus denitrificans BC 10105478 YP_004128012.1 CDS Alide_3405 NC_014910.1 3559094 3561163 D KEGG: dia:Dtpsy_2806 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein; methionyl-tRNA synthetase 3559094..3561163 Alicycliphilus denitrificans BC 10105479 YP_004128013.1 CDS Alide_3406 NC_014910.1 3561180 3561407 D KEGG: dac:Daci_1842 hypothetical protein; hypothetical protein 3561180..3561407 Alicycliphilus denitrificans BC 10105480 YP_004128014.1 CDS Alide_3407 NC_014910.1 3561581 3563053 R KEGG: tmz:Tmz1t_0986 transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(3561581..3563053) Alicycliphilus denitrificans BC 10105481 YP_004128015.1 CDS Alide_3408 NC_014910.1 3563143 3564360 D KEGG: dac:Daci_3710 benzoate transporter; TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; benzoate transporter 3563143..3564360 Alicycliphilus denitrificans BC 10105482 YP_004128016.1 CDS Alide_3409 NC_014910.1 3564357 3565151 D PFAM: alanine racemase domain protein; KEGG: dac:Daci_3709 alanine racemase domain-containing protein; alanine racemase 3564357..3565151 Alicycliphilus denitrificans BC 10105483 YP_004128017.1 CDS Alide_3410 NC_014910.1 3565148 3565864 D PFAM: glutamine amidotransferase class-I; KEGG: tmz:Tmz1t_0983 glutamine amidotransferase; glutamine amidotransferase class-i 3565148..3565864 Alicycliphilus denitrificans BC 10105484 YP_004128018.1 CDS Alide_3411 NC_014910.1 3565950 3566957 R KEGG: ajs:Ajs_3485 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; helix-turn-helix Fis-type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator complement(3565950..3566957) Alicycliphilus denitrificans BC 10105485 YP_004128019.1 CDS Alide_3412 NC_014910.1 3567052 3568662 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dia:Dtpsy_2809 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3567052..3568662 Alicycliphilus denitrificans BC 10105486 YP_004128020.1 CDS Alide_3413 NC_014910.1 3568659 3569810 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ajs:Ajs_3487 FMN-dependent alpha-hydroxy acid dehydrogenase; fmn-dependent alpha-hydroxy acid dehydrogenase 3568659..3569810 Alicycliphilus denitrificans BC 10105487 YP_004128021.1 CDS Alide_3414 NC_014910.1 3569879 3571531 D PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: ajs:Ajs_3488 hypothetical protein; thiamine pyrophosphate tpp-binding domain-containing protein 3569879..3571531 Alicycliphilus denitrificans BC 10105488 YP_004128022.1 CDS Alide_3415 NC_014910.1 3571538 3572038 R KEGG: dac:Daci_1840 lipoprotein; lipoprotein complement(3571538..3572038) Alicycliphilus denitrificans BC 10105489 YP_004128023.1 CDS Alide_3416 NC_014910.1 3572084 3572299 D KEGG: ajs:Ajs_3491 hypothetical protein; hypothetical protein 3572084..3572299 Alicycliphilus denitrificans BC 10105490 YP_004128024.1 CDS Alide_3417 NC_014910.1 3572365 3573201 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: ajs:Ajs_3492 condensin subunit ScpA; chromosome segregation and condensation protein scpa 3572365..3573201 Alicycliphilus denitrificans BC 10105491 YP_004128025.1 CDS Alide_3418 NC_014910.1 3573186 3573740 R KEGG: sml:Smlt2675 carboxymuconolactone decarboxylase family protein; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein complement(3573186..3573740) Alicycliphilus denitrificans BC 10105492 YP_004128026.1 CDS Alide_3419 NC_014910.1 3573836 3574705 D KEGG: reh:H16_A1911 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 3573836..3574705 Alicycliphilus denitrificans BC 10105493 YP_004128027.1 CDS Alide_3420 NC_014910.1 3574797 3576371 D KEGG: vei:Veis_1080 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; l-aspartate oxidase 3574797..3576371 Alicycliphilus denitrificans BC 10105494 YP_004128028.1 CDS Alide_3421 NC_014910.1 3576419 3576781 D PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: dia:Dtpsy_2818 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 3576419..3576781 Alicycliphilus denitrificans BC 10105495 YP_004128029.1 CDS Alide_3422 NC_014910.1 3576919 3578661 R KEGG: ajs:Ajs_3496 para-aminobenzoate synthase, subunit I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; aminotransferase class IV; para-aminobenzoate synthase, subunit i complement(3576919..3578661) Alicycliphilus denitrificans BC 10105496 YP_004128030.1 CDS Alide_3423 NC_014910.1 3578715 3579839 R TIGRFAM: quinolinate synthetase complex, A subunit; KEGG: dia:Dtpsy_2820 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthetase complex, a subunit complement(3578715..3579839) Alicycliphilus denitrificans BC 10105497 YP_004128031.1 CDS Alide_3424 NC_014910.1 3580061 3580942 R TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: dia:Dtpsy_2821 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(3580061..3580942) Alicycliphilus denitrificans BC 10105498 YP_004128032.1 CDS Alide_3426 NC_014910.1 3581261 3582145 D TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: dia:Dtpsy_2822 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3581261..3582145 Alicycliphilus denitrificans BC 10105500 YP_004128033.1 CDS Alide_3427 NC_014910.1 3582157 3583008 D KEGG: ajs:Ajs_3500 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 3582157..3583008 Alicycliphilus denitrificans BC 10105501 YP_004128034.1 CDS Alide_3428 NC_014910.1 3583128 3584018 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbr:BB0990 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3583128..3584018) Alicycliphilus denitrificans BC 10105502 YP_004128035.1 CDS Alide_3429 NC_014910.1 3584135 3585127 D KEGG: bpa:BPP0896 hypothetical protein; hypothetical protein 3584135..3585127 Alicycliphilus denitrificans BC 10105503 YP_004128036.1 CDS Alide_3430 NC_014910.1 3585136 3586662 D PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: bbr:BB0988 hypothetical protein; microcystin lr degradation protein mlrc-like protein 3585136..3586662 Alicycliphilus denitrificans BC 10105504 YP_004128037.1 CDS Alide_3431 NC_014910.1 3586677 3587414 D PFAM: protein of unknown function DUF81; KEGG: bpa:BPP0894 hypothetical protein; hypothetical protein 3586677..3587414 Alicycliphilus denitrificans BC 10105505 YP_004128038.1 CDS Alide_3432 NC_014910.1 3587446 3588429 D KEGG: bpa:BPP0893 hypothetical protein; hypothetical protein 3587446..3588429 Alicycliphilus denitrificans BC 10105506 YP_004128039.1 CDS Alide_3433 NC_014910.1 3588457 3589179 R KEGG: pna:Pnap_3576 hypothetical protein; hypothetical protein complement(3588457..3589179) Alicycliphilus denitrificans BC 10105507 YP_004128040.1 CDS Alide_3434 NC_014910.1 3589297 3590289 R KEGG: ajs:Ajs_3501 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; manually curated; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; nad-dependent glycerol-3-phosphate dehydrogenase domain-containing protein complement(3589297..3590289) Alicycliphilus denitrificans BC 10105508 YP_004128041.1 CDS Alide_3435 NC_014910.1 3590355 3590810 R KEGG: dia:Dtpsy_2825 preprotein translocase subunit SecB; TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; protein-export protein secb complement(3590355..3590810) Alicycliphilus denitrificans BC 10105509 YP_004128042.1 CDS Alide_3436 NC_014910.1 3590918 3591175 R KEGG: dia:Dtpsy_2826 glutaredoxin 3; TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 3 complement(3590918..3591175) Alicycliphilus denitrificans BC 10105510 YP_004128043.1 CDS Alide_3437 NC_014910.1 3591224 3591631 R KEGG: dia:Dtpsy_2827 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; rhodanese domain-containing protein complement(3591224..3591631) Alicycliphilus denitrificans BC 10105511 YP_004128044.1 CDS Alide_3438 NC_014910.1 3591705 3592448 D TIGRFAM: phosphoglycerate mutase 1 family; KEGG: ajs:Ajs_3505 phosphoglyceromutase; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 3591705..3592448 Alicycliphilus denitrificans BC 10105512 YP_004128045.1 CDS Alide_3439 NC_014910.1 3592535 3593971 D TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_3506 C-terminal processing peptidase-3; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 3592535..3593971 Alicycliphilus denitrificans BC 10105513 YP_004128046.1 CDS Alide_3440 NC_014910.1 3594039 3594803 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: ajs:Ajs_3507 UBA/ThiF-type NAD/FAD binding protein; uba/thif-type nad/fad binding protein 3594039..3594803 Alicycliphilus denitrificans BC 10105514 YP_004128047.1 CDS Alide_3441 NC_014910.1 3594909 3595328 D KEGG: dia:Dtpsy_2831 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 3594909..3595328 Alicycliphilus denitrificans BC 10105515 YP_004128048.1 CDS Alide_3442 NC_014910.1 3595306 3595938 R KEGG: dia:Dtpsy_2832 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver complement(3595306..3595938) Alicycliphilus denitrificans BC 10105516 YP_004128049.1 CDS Alide_3443 NC_014910.1 3596048 3597391 D KEGG: ajs:Ajs_3510 multi-sensor signal transduction histidine kinase; PFAM: CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; chase3 domain-containing protein 3596048..3597391 Alicycliphilus denitrificans BC 10105517 YP_004128050.1 CDS Alide_3444 NC_014910.1 3597534 3597698 D PFAM: protein of unknown function DUF1328; KEGG: dia:Dtpsy_2834 hypothetical protein; hypothetical protein 3597534..3597698 Alicycliphilus denitrificans BC 10105518 YP_004128051.1 CDS Alide_3445 NC_014910.1 3597764 3598156 D PFAM: protein of unknown function DUF883 ElaB; KEGG: dia:Dtpsy_2835 hypothetical protein; hypothetical protein 3597764..3598156 Alicycliphilus denitrificans BC 10105519 YP_004128052.1 CDS Alide_3446 NC_014910.1 3598295 3598609 D KEGG: dia:Dtpsy_2837 transport-associated; PFAM: transport-associated; SMART: Transport-associated and nodulation region; transport-associated protein 3598295..3598609 Alicycliphilus denitrificans BC 10105520 YP_004128053.1 CDS Alide_3447 NC_014910.1 3598765 3599253 R TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: dia:Dtpsy_2839 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(3598765..3599253) Alicycliphilus denitrificans BC 10105521 YP_004128054.1 CDS Alide_3448 NC_014910.1 3599381 3599971 R TIGRFAM: methyltransferase; KEGG: dia:Dtpsy_2840 methyltransferase; PFAM: Conserved hypothetical protein CHP00095; methyltransferase complement(3599381..3599971) Alicycliphilus denitrificans BC 10105522 YP_004128055.1 CDS Alide_3449 NC_014910.1 3599968 3601326 R KEGG: dia:Dtpsy_2841 peptidase M16 domain protein; manually curated; PFAM: peptidase M16 domain protein; peptidase m16 domain-containing protein complement(3599968..3601326) Alicycliphilus denitrificans BC 10105523 YP_004128056.1 CDS Alide_3450 NC_014910.1 3601340 3602770 R PFAM: peptidase M16 domain protein; KEGG: dia:Dtpsy_2842 peptidase M16 domain protein; peptidase m16 domain-containing protein complement(3601340..3602770) Alicycliphilus denitrificans BC 10105524 YP_004128057.1 CDS Alide_3451 NC_014910.1 3602800 3603924 D TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: dia:Dtpsy_2843 signal recognition particle-docking protein FtsY; SMART: AAA ATPase; signal recognition particle-docking protein ftsy 3602800..3603924 Alicycliphilus denitrificans BC 10105525 YP_004128058.1 CDS Alide_3452 NC_014910.1 3603938 3604891 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_1392 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3603938..3604891) Alicycliphilus denitrificans BC 10105526 YP_004128059.1 CDS Alide_3453 NC_014910.1 3605010 3605948 D PFAM: dihydrodipicolinate synthetase; KEGG: dac:Daci_3342 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 3605010..3605948 Alicycliphilus denitrificans BC 10105527 YP_004128060.1 CDS Alide_3454 NC_014910.1 3605980 3606945 D KEGG: dac:Daci_3341 hypothetical protein; hypothetical protein 3605980..3606945 Alicycliphilus denitrificans BC 10105528 YP_004128061.1 CDS Alide_3455 NC_014910.1 3606935 3607639 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_5678 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 3606935..3607639 Alicycliphilus denitrificans BC 10105529 YP_004128062.1 CDS Alide_3456 NC_014910.1 3607665 3608831 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: dac:Daci_3339 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 3607665..3608831 Alicycliphilus denitrificans BC 10105530 YP_004128063.1 CDS Alide_3457 NC_014910.1 3608846 3609202 R PFAM: CutA1 divalent ion tolerance protein; KEGG: dia:Dtpsy_2844 CutA1 divalent ion tolerance protein; cuta1 divalent ion tolerance protein complement(3608846..3609202) Alicycliphilus denitrificans BC 10105531 YP_004128064.1 CDS Alide_3458 NC_014910.1 3609317 3610306 R KEGG: dac:Daci_4557 hypothetical protein; hypothetical protein complement(3609317..3610306) Alicycliphilus denitrificans BC 10105532 YP_004128065.1 CDS Alide_3459 NC_014910.1 3610361 3611332 R KEGG: vap:Vapar_6186 hypothetical protein; hypothetical protein complement(3610361..3611332) Alicycliphilus denitrificans BC 10105533 YP_004128066.1 CDS Alide_3460 NC_014910.1 3611418 3614063 D PFAM: aconitate hydratase domain-containing protein; KEGG: dac:Daci_4555 aconitate hydratase; aconitate hydratase domain-containing protein 3611418..3614063 Alicycliphilus denitrificans BC 10105534 YP_004128067.1 CDS Alide_3461 NC_014910.1 3614074 3615015 D KEGG: dac:Daci_4554 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3614074..3615015 Alicycliphilus denitrificans BC 10105535 YP_004128068.1 CDS Alide_3462 NC_014910.1 3615028 3615765 D KEGG: dac:Daci_4553 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 3615028..3615765 Alicycliphilus denitrificans BC 10105536 YP_004128069.1 CDS Alide_3463 NC_014910.1 3615762 3616844 D KEGG: dac:Daci_4552 hemagglutinin-related protein; hemagglutinin-like protein 3615762..3616844 Alicycliphilus denitrificans BC 10105537 YP_004128070.1 CDS Alide_3464 NC_014910.1 3616847 3617914 R PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rpa:RPA3655 alcohol dehydrogenase; molecular chaperone GroES complement(3616847..3617914) Alicycliphilus denitrificans BC 10105538 YP_004128071.1 CDS Alide_3465 NC_014910.1 3618081 3618767 R KEGG: pol:Bpro_1513 hydratase/decarboxylase; hydratase/decarboxylase complement(3618081..3618767) Alicycliphilus denitrificans BC 10105539 YP_004128072.1 CDS Alide_3466 NC_014910.1 3619314 3619979 D KEGG: dac:Daci_2714 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 3619314..3619979 Alicycliphilus denitrificans BC 10105540 YP_004128073.1 CDS Alide_3467 NC_014910.1 3619983 3621380 D manually curated; PFAM: histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: dac:Daci_2713 histidine kinase; SMART: histidine kinase A domain protein; ATP-binding region ATPase domain protein; histidine kinase a domain-containing protein 3619983..3621380 Alicycliphilus denitrificans BC 10105541 YP_004128074.1 CDS Alide_3468 NC_014910.1 3621383 3622078 R PFAM: protein of unknown function DUF125 transmembrane; KEGG: dac:Daci_2712 hypothetical protein; hypothetical protein complement(3621383..3622078) Alicycliphilus denitrificans BC 10105542 YP_004128075.1 CDS Alide_3469 NC_014910.1 3622104 3622661 R manually curated; KEGG: dac:Daci_2711 cytochrome b561; cytochrome b561 complement(3622104..3622661) Alicycliphilus denitrificans BC 10105543 YP_004128076.1 CDS Alide_3470 NC_014910.1 3623015 3624064 D KEGG: dac:Daci_2710 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 3623015..3624064 Alicycliphilus denitrificans BC 10105544 YP_004128077.1 CDS Alide_3471 NC_014910.1 3624075 3627167 D KEGG: dac:Daci_2709 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, czca family 3624075..3627167 Alicycliphilus denitrificans BC 10105545 YP_004128078.1 CDS Alide_3472 NC_014910.1 3627164 3627505 D KEGG: dac:Daci_2708 hypothetical protein; hypothetical protein 3627164..3627505 Alicycliphilus denitrificans BC 10105546 YP_004128079.1 CDS Alide_3473 NC_014910.1 3627502 3628764 D KEGG: dac:Daci_2707 outer membrane efflux protein; outer membrane efflux protein 3627502..3628764 Alicycliphilus denitrificans BC 10105547 YP_004128080.1 CDS Alide_3474 NC_014910.1 3629018 3629800 R KEGG: dba:Dbac_1405 ABC transporter related; hypothetical protein complement(3629018..3629800) Alicycliphilus denitrificans BC 10105548 YP_004128081.1 CDS Alide_3475 NC_014910.1 3630179 3631114 D KEGG: dia:Dtpsy_2845 RNA polymerase, sigma 32 subunit, RpoH; TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; RNA polymerase sigma factor rpoh 3630179..3631114 Alicycliphilus denitrificans BC 10105549 YP_004128082.1 CDS Alide_3476 NC_014910.1 3631257 3632267 D KEGG: dia:Dtpsy_2846 hypothetical protein; hypothetical protein 3631257..3632267 Alicycliphilus denitrificans BC 10105550 YP_004128083.1 CDS Alide_3477 NC_014910.1 3632301 3632864 R PFAM: electron transport protein SCO1/SenC; KEGG: dia:Dtpsy_2849 electron transport protein SCO1/SenC; electron transport protein sco1/senc complement(3632301..3632864) Alicycliphilus denitrificans BC 10105551 YP_004128084.1 CDS Alide_3478 NC_014910.1 3632922 3633848 R KEGG: dia:Dtpsy_2850 protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase complement(3632922..3633848) Alicycliphilus denitrificans BC 10105552 YP_004128085.1 CDS Alide_3479 NC_014910.1 3633845 3635002 R PFAM: cytochrome oxidase assembly; KEGG: ajs:Ajs_3528 cytochrome oxidase assembly; cytochrome oxidase assembly complement(3633845..3635002) Alicycliphilus denitrificans BC 10105553 YP_004128086.1 CDS Alide_3480 NC_014910.1 3634999 3635754 R KEGG: ajs:Ajs_3529 hypothetical protein; hypothetical protein complement(3634999..3635754) Alicycliphilus denitrificans BC 10105554 YP_004128087.1 CDS Alide_3481 NC_014910.1 3635696 3636463 R KEGG: dia:Dtpsy_2853 transmembrane cytochrome oxidase; transmembrane cytochrome oxidase complement(3635696..3636463) Alicycliphilus denitrificans BC 10105555 YP_004128088.1 CDS Alide_3482 NC_014910.1 3636470 3636703 D KEGG: ajs:Ajs_3531 transmembrane protein; transmembrane protein 3636470..3636703 Alicycliphilus denitrificans BC 10105556 YP_004128089.1 CDS Alide_3483 NC_014910.1 3636777 3637661 R PFAM: cytochrome c oxidase subunit III; KEGG: dia:Dtpsy_2855 cytochrome c oxidase subunit III; cytochrome c oxidase subunit iii complement(3636777..3637661) Alicycliphilus denitrificans BC 10105557 YP_004128090.1 CDS Alide_3484 NC_014910.1 3637721 3637933 R KEGG: dia:Dtpsy_2856 hypothetical protein; hypothetical protein complement(3637721..3637933) Alicycliphilus denitrificans BC 10105558 YP_004128091.1 CDS Alide_3485 NC_014910.1 3637933 3638556 R PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: dia:Dtpsy_2857 cytochrome c oxidase assembly protein; cytochrome c oxidase assembly protein ctag/cox11 complement(3637933..3638556) Alicycliphilus denitrificans BC 10105559 YP_004128092.1 CDS Alide_3486 NC_014910.1 3638572 3638688 R KEGG: vap:Vapar_4390 hypothetical protein; hypothetical protein complement(3638572..3638688) Alicycliphilus denitrificans BC 10105560 YP_004128093.1 CDS Alide_3487 NC_014910.1 3638706 3640337 R KEGG: ajs:Ajs_3536 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase, subunit i complement(3638706..3640337) Alicycliphilus denitrificans BC 10105561 YP_004128094.1 CDS Alide_3488 NC_014910.1 3640375 3641538 R KEGG: dia:Dtpsy_2860 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome c class I; cytochrome c oxidase, subunit ii complement(3640375..3641538) Alicycliphilus denitrificans BC 10105562 YP_004128095.1 CDS Alide_3489 NC_014910.1 3641990 3642898 R KEGG: ajs:Ajs_3539 biotin synthesis protein BioC; biotin synthesis protein bioc complement(3641990..3642898) Alicycliphilus denitrificans BC 10105563 YP_004128096.1 CDS Alide_3490 NC_014910.1 3642934 3643671 D PFAM: phosphoribosyltransferase; KEGG: ajs:Ajs_3540 ComF family protein; phosphoribosyltransferase 3642934..3643671 Alicycliphilus denitrificans BC 10105564 YP_004128097.1 CDS Alide_3491 NC_014910.1 3643726 3644202 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dia:Dtpsy_2864 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase (spou) 3643726..3644202 Alicycliphilus denitrificans BC 10105565 YP_004128098.1 CDS Alide_3492 NC_014910.1 3644199 3645122 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_3911 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3644199..3645122) Alicycliphilus denitrificans BC 10105566 YP_004128099.1 CDS Alide_3493 NC_014910.1 3645349 3645672 D KEGG: aav:Aave_3912 hypothetical protein; hypothetical protein 3645349..3645672 Alicycliphilus denitrificans BC 10105567 YP_004128100.1 CDS Alide_3494 NC_014910.1 3645752 3646372 R KEGG: dia:Dtpsy_2866 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase complement(3645752..3646372) Alicycliphilus denitrificans BC 10105568 YP_004128101.1 CDS Alide_3495 NC_014910.1 3646452 3647090 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3544 lysine exporter protein LysE/YggA; lysine exporter protein (lyse/ygga) complement(3646452..3647090) Alicycliphilus denitrificans BC 10105569 YP_004128102.1 CDS Alide_3496 NC_014910.1 3647209 3649059 D KEGG: dia:Dtpsy_2868 glutathione-regulated potassium-efflux system protein KefC; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; potassium efflux system protein 3647209..3649059 Alicycliphilus denitrificans BC 10105570 YP_004128103.1 CDS Alide_3497 NC_014910.1 3649114 3649908 R KEGG: mav:MAV_1744 transcriptional regulator, GntR family protein; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; ubic transcription regulator-associated domain-containing protein complement(3649114..3649908) Alicycliphilus denitrificans BC 10105571 YP_004128104.1 CDS Alide_3498 NC_014910.1 3650072 3650935 D PFAM: isocitrate lyase and phosphorylmutase; KEGG: cak:Caul_0509 carboxyvinyl-carboxyphosphonate phosphorylmutase; isocitrate lyase and phosphorylmutase 3650072..3650935 Alicycliphilus denitrificans BC 10105572 YP_004128105.1 CDS Alide_3499 NC_014910.1 3650943 3652352 D KEGG: bja:bll0416 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase large subunit 3650943..3652352 Alicycliphilus denitrificans BC 10105573 YP_004128106.1 CDS Alide_3500 NC_014910.1 3652355 3652987 D KEGG: cak:Caul_0508 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase small subunit 3652355..3652987 Alicycliphilus denitrificans BC 10105574 YP_004128107.1 CDS Alide_3501 NC_014910.1 3653010 3654011 D KEGG: pol:Bpro_2294 hypothetical protein; hypothetical protein 3653010..3654011 Alicycliphilus denitrificans BC 10105575 YP_004128108.1 CDS Alide_3502 NC_014910.1 3654023 3655201 D PFAM: protein of unknown function DUF453; KEGG: cak:Caul_0497 hypothetical protein; hypothetical protein 3654023..3655201 Alicycliphilus denitrificans BC 10105576 YP_004128109.1 CDS Alide_3503 NC_014910.1 3655206 3656639 D PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_4268 MmgE/PrpD family protein; mmge/prpd family protein 3655206..3656639 Alicycliphilus denitrificans BC 10105577 YP_004128110.1 CDS Alide_3504 NC_014910.1 3656636 3657595 D KEGG: vap:Vapar_4085 hypothetical protein; hypothetical protein 3656636..3657595 Alicycliphilus denitrificans BC 10105578 YP_004128111.1 CDS Alide_3505 NC_014910.1 3657622 3658617 D KEGG: vap:Vapar_4972 hypothetical protein; hypothetical protein 3657622..3658617 Alicycliphilus denitrificans BC 10105579 YP_004128112.1 CDS Alide_3506 NC_014910.1 3658731 3659918 R TIGRFAM: amidohydrolase; KEGG: bph:Bphy_3769 amidohydrolase; PFAM: peptidase M20; amidohydrolase complement(3658731..3659918) Alicycliphilus denitrificans BC 10105580 YP_004128113.1 CDS Alide_3507 NC_014910.1 3659932 3660561 R KEGG: bpt:Bpet0051 secreted protein; secreted protein complement(3659932..3660561) Alicycliphilus denitrificans BC 10105581 YP_004128114.1 CDS Alide_3508 NC_014910.1 3660606 3661430 D PFAM: LysR substrate-binding; KEGG: rec:RHECIAT_CH0001484 transcriptional regulator protein, LysR family; LysR family transcriptional regulator 3660606..3661430 Alicycliphilus denitrificans BC 10105582 YP_004128115.1 CDS Alide_3510 NC_014910.1 3661812 3662804 R KEGG: dia:Dtpsy_2869 hypothetical protein; hypothetical protein complement(3661812..3662804) Alicycliphilus denitrificans BC 10105584 YP_004128116.1 CDS Alide_3511 NC_014910.1 3662849 3663574 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_3940 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(3662849..3663574) Alicycliphilus denitrificans BC 10105585 YP_004128117.1 CDS Alide_3512 NC_014910.1 3663636 3664838 R TIGRFAM: beta-ketoadipyl CoA thiolase; acetyl-CoA acetyltransferase; KEGG: dac:Daci_5563 beta-ketoadipyl CoA thiolase; PFAM: Thiolase-like; beta-ketoadipyl CoA thiolase complement(3663636..3664838) Alicycliphilus denitrificans BC 10105586 YP_004128118.1 CDS Alide_3513 NC_014910.1 3664916 3665560 R TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: dia:Dtpsy_2872 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(3664916..3665560) Alicycliphilus denitrificans BC 10105587 YP_004128119.1 CDS Alide_3514 NC_014910.1 3665583 3666278 R TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: dia:Dtpsy_2873 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(3665583..3666278) Alicycliphilus denitrificans BC 10105588 YP_004128120.1 CDS Alide_3515 NC_014910.1 3666381 3667184 D TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; KEGG: dia:Dtpsy_2874 transcriptional regulator, IclR family; SMART: regulatory protein IclR; beta-ketoadipate pathway transcriptional regulator 3666381..3667184 Alicycliphilus denitrificans BC 10105589 YP_004128121.1 CDS Alide_3516 NC_014910.1 3667195 3667629 D PFAM: Domain of unknown function DUF1841; KEGG: ajs:Ajs_3553 hypothetical protein; hypothetical protein 3667195..3667629 Alicycliphilus denitrificans BC 10105590 YP_004128122.1 CDS Alide_3517 NC_014910.1 3667564 3668445 R PFAM: UspA domain-containing protein; KEGG: ajs:Ajs_3554 UspA domain-containing protein; uspa domain-containing protein complement(3667564..3668445) Alicycliphilus denitrificans BC 10105591 YP_004128123.1 CDS Alide_3518 NC_014910.1 3668892 3669551 R PFAM: cytochrome c class I; KEGG: dia:Dtpsy_2878 cytochrome c class I; cytochrome c class i complement(3668892..3669551) Alicycliphilus denitrificans BC 10105592 YP_004128124.1 CDS Alide_3519 NC_014910.1 3669672 3670514 D KEGG: ajs:Ajs_3556 ATPase central domain-containing protein; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATPase AAA 3669672..3670514 Alicycliphilus denitrificans BC 10105593 YP_004128125.1 CDS Alide_3520 NC_014910.1 3670526 3671125 D KEGG: dia:Dtpsy_2881 GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase 3670526..3671125 Alicycliphilus denitrificans BC 10105594 YP_004128126.1 CDS Alide_3521 NC_014910.1 3671141 3672154 R KEGG: cti:RALTA_B1738 conserved hypothetical protein; UPF0065; hypothetical protein complement(3671141..3672154) Alicycliphilus denitrificans BC 10105595 YP_004128127.1 CDS Alide_3522 NC_014910.1 3672415 3673194 D KEGG: bpy:Bphyt_0617 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain-containing protein; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3672415..3673194 Alicycliphilus denitrificans BC 10105596 YP_004128128.1 CDS Alide_3523 NC_014910.1 3673202 3674398 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sti:Sthe_3003 formyl-CoA transferase; l-carnitine dehydratase/bile acid-inducible protein f 3673202..3674398 Alicycliphilus denitrificans BC 10105597 YP_004128129.1 CDS Alide_3524 NC_014910.1 3674415 3675575 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: sti:Sthe_1794 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 3674415..3675575 Alicycliphilus denitrificans BC 10105598 YP_004128130.1 CDS Alide_3525 NC_014910.1 3675588 3676370 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pzu:PHZ_c3022 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase 3675588..3676370 Alicycliphilus denitrificans BC 10105599 YP_004128131.1 CDS Alide_3526 NC_014910.1 3676355 3677704 D PFAM: MmgE/PrpD family protein; KEGG: nmg:Nmag_3457 MmgE/PrpD family protein; mmge/prpd family protein 3676355..3677704 Alicycliphilus denitrificans BC 10105600 YP_004128132.1 CDS Alide_3527 NC_014910.1 3677779 3678966 D KEGG: ajs:Ajs_3559 hypothetical protein; hypothetical protein 3677779..3678966 Alicycliphilus denitrificans BC 10105601 YP_004128133.1 CDS Alide_3528 NC_014910.1 3678971 3680866 D PFAM: surface antigen (D15); KEGG: dia:Dtpsy_2883 surface antigen (D15); surface antigen (d15) 3678971..3680866 Alicycliphilus denitrificans BC 10105602 YP_004128134.1 CDS Alide_3529 NC_014910.1 3680972 3685060 D PFAM: protein of unknown function DUF490; KEGG: ajs:Ajs_3561 hypothetical protein; hypothetical protein 3680972..3685060 Alicycliphilus denitrificans BC 10105603 YP_004128135.1 CDS Alide_3530 NC_014910.1 3685294 3686262 R KEGG: sdn:Sden_0296 hypothetical protein; hypothetical protein complement(3685294..3686262) Alicycliphilus denitrificans BC 10105604 YP_004128136.1 CDS Alide_3531 NC_014910.1 3686532 3686756 R KEGG: sbi:SORBI_03g042340 hypothetical protein; hypothetical protein complement(3686532..3686756) Alicycliphilus denitrificans BC 10105605 YP_004128137.1 CDS Alide_3532 NC_014910.1 3686847 3687038 R KEGG: rpf:Rpic12D_4805 hypothetical protein; hypothetical protein complement(3686847..3687038) Alicycliphilus denitrificans BC 10105606 YP_004128138.1 CDS Alide_3533 NC_014910.1 3687035 3687436 R KEGG: vei:Veis_3760 hypothetical protein; hypothetical protein complement(3687035..3687436) Alicycliphilus denitrificans BC 10105607 YP_004128139.1 CDS Alide_3534 NC_014910.1 3687429 3687737 R KEGG: dhd:Dhaf_3041 excinuclease ABC subunit C; excinuclease abc subunit c complement(3687429..3687737) Alicycliphilus denitrificans BC 10105608 YP_004128140.1 CDS Alide_3535 NC_014910.1 3687857 3689104 R KEGG: dac:Daci_3452 lysozyme; hypothetical protein complement(3687857..3689104) Alicycliphilus denitrificans BC 10105609 YP_004128141.1 CDS Alide_3536 NC_014910.1 3689109 3689447 R KEGG: ana:all0634 hypothetical protein; hypothetical protein complement(3689109..3689447) Alicycliphilus denitrificans BC 10105610 YP_004128142.1 CDS Alide_3537 NC_014910.1 3689490 3690398 R KEGG: mav:MAV_0791 hypothetical protein; hypothetical protein complement(3689490..3690398) Alicycliphilus denitrificans BC 10105611 YP_004128143.1 CDS Alide_3538 NC_014910.1 3690395 3691843 R KEGG: cel:Y25C1A.3 C-type LECtin; hypothetical protein complement(3690395..3691843) Alicycliphilus denitrificans BC 10105612 YP_004128144.1 CDS Alide_3539 NC_014910.1 3691853 3694126 R KEGG: nml:Namu_4228 conserved repeat domain protein; hypothetical protein complement(3691853..3694126) Alicycliphilus denitrificans BC 10105613 YP_004128145.1 CDS Alide_3540 NC_014910.1 3694328 3694780 R KEGG: cph:Cpha266_1609 hypothetical protein; hypothetical protein complement(3694328..3694780) Alicycliphilus denitrificans BC 10105614 YP_004128146.1 CDS Alide_3541 NC_014910.1 3694972 3696600 R KEGG: nmg:Nmag_3292 Cna B domain protein; hypothetical protein complement(3694972..3696600) Alicycliphilus denitrificans BC 10105615 YP_004128147.1 CDS Alide_3542 NC_014910.1 3696597 3699761 R KEGG: cre:CHLREDRAFT_167270 hypothetical protein; hypothetical protein complement(3696597..3699761) Alicycliphilus denitrificans BC 10105616 YP_004128148.1 CDS Alide_3543 NC_014910.1 3699776 3702571 R KEGG: pna:Pnap_2248 TP901 family phage tail tape measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, tp901 family complement(3699776..3702571) Alicycliphilus denitrificans BC 10105617 YP_004128149.1 CDS Alide_3544 NC_014910.1 3702647 3703438 R KEGG: hth:HTH_0895 hypothetical protein; hypothetical protein complement(3702647..3703438) Alicycliphilus denitrificans BC 10105618 YP_004128150.1 CDS Alide_3545 NC_014910.1 3703474 3703875 R KEGG: pna:Pnap_2250 hypothetical protein; hypothetical protein complement(3703474..3703875) Alicycliphilus denitrificans BC 10105619 YP_004128151.1 CDS Alide_3546 NC_014910.1 3703888 3704226 R KEGG: pna:Pnap_2251 hypothetical protein; hypothetical protein complement(3703888..3704226) Alicycliphilus denitrificans BC 10105620 YP_004128152.1 CDS Alide_3547 NC_014910.1 3704229 3705242 R KEGG: mes:Meso_1217 phage protein GP20; phage protein gp20 complement(3704229..3705242) Alicycliphilus denitrificans BC 10105621 YP_004128153.1 CDS Alide_3548 NC_014910.1 3705270 3705656 R KEGG: xal:XALc_0211 hypothetical protein; hypothetical protein complement(3705270..3705656) Alicycliphilus denitrificans BC 10105622 YP_004128154.1 CDS Alide_3549 NC_014910.1 3705668 3707023 R PFAM: peptidase S49; KEGG: met:M446_4143 peptidase S49; peptidase s49 complement(3705668..3707023) Alicycliphilus denitrificans BC 10105623 YP_004128155.1 CDS Alide_3550 NC_014910.1 3707020 3708636 R KEGG: lhk:LHK_01658 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; phage portal protein, lambda family complement(3707020..3708636) Alicycliphilus denitrificans BC 10105624 YP_004128156.1 CDS Alide_3551 NC_014910.1 3708640 3708867 R KEGG: sus:Acid_3400 hypothetical protein; hypothetical protein complement(3708640..3708867) Alicycliphilus denitrificans BC 10105625 YP_004128157.1 CDS Alide_3552 NC_014910.1 3708922 3709239 R KEGG: hmg:100211620 similar to H28G03.4; hypothetical protein complement(3708922..3709239) Alicycliphilus denitrificans BC 10105626 YP_004128158.1 CDS Alide_3553 NC_014910.1 3709236 3711296 R PFAM: terminase GpA; KEGG: dac:Daci_4687 terminase GpA; terminase gpa complement(3709236..3711296) Alicycliphilus denitrificans BC 10105627 YP_004128159.1 CDS Alide_3554 NC_014910.1 3711293 3712042 R PFAM: DNA packaging Nu1; KEGG: dac:Daci_4688 hypothetical protein; DNA packaging nu1 complement(3711293..3712042) Alicycliphilus denitrificans BC 10105628 YP_004128160.1 CDS Alide_3555 NC_014910.1 3712175 3712273 R hypothetical protein complement(3712175..3712273) Alicycliphilus denitrificans BC 10105629 YP_004128161.1 CDS Alide_3556 NC_014910.1 3712270 3712599 R KEGG: bph:Bphy_1886 hypothetical protein; hypothetical protein complement(3712270..3712599) Alicycliphilus denitrificans BC 10105630 YP_004128162.1 CDS Alide_3557 NC_014910.1 3712596 3713240 R KEGG: bpt:Bpet0970 hypothetical protein; hypothetical protein complement(3712596..3713240) Alicycliphilus denitrificans BC 10105631 YP_004128163.1 CDS Alide_3558 NC_014910.1 3713188 3714198 R KEGG: apt:APA01_05090 hypothetical protein; hypothetical protein complement(3713188..3714198) Alicycliphilus denitrificans BC 10105632 YP_004128164.1 CDS Alide_3559 NC_014910.1 3714202 3714957 R KEGG: bvu:BVU_2841 hypothetical protein; hypothetical protein complement(3714202..3714957) Alicycliphilus denitrificans BC 10105633 YP_004128165.1 CDS Alide_3560 NC_014910.1 3714954 3715646 R KEGG: hiq:CGSHiGG_04860 hypothetical protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parb domain-containing protein nuclease complement(3714954..3715646) Alicycliphilus denitrificans BC 10105634 YP_004128166.1 CDS Alide_3561 NC_014910.1 3715665 3716351 R KEGG: aav:Aave_1760 hypothetical protein; hypothetical protein complement(3715665..3716351) Alicycliphilus denitrificans BC 10105635 YP_004128167.1 CDS Alide_3562 NC_014910.1 3716354 3717178 R KEGG: pna:Pnap_2259 hypothetical protein; hypothetical protein complement(3716354..3717178) Alicycliphilus denitrificans BC 10105636 YP_004128168.1 CDS Alide_3564 NC_014910.1 3717366 3717914 R KEGG: pna:Pnap_2262 hypothetical protein; hypothetical protein complement(3717366..3717914) Alicycliphilus denitrificans BC 10105638 YP_004128169.1 CDS Alide_3565 NC_014910.1 3717921 3718238 R KEGG: pzu:PHZ_c1002 competence-damaged inducible protein; competence-damaged inducible protein complement(3717921..3718238) Alicycliphilus denitrificans BC 10105639 YP_004128170.1 CDS Alide_3566 NC_014910.1 3718373 3718630 D KEGG: act:ACLA_020300 Hsp70 family chaperone Lhs1/Orp150, putative; molecular chaperone DnaK 3718373..3718630 Alicycliphilus denitrificans BC 10105640 YP_004128171.1 CDS Alide_3567 NC_014910.1 3719126 3719542 D manually curated; KEGG: pfl:PFL_2126 Cro/CI family transcriptional regulator; hypothetical protein 3719126..3719542 Alicycliphilus denitrificans BC 10105641 YP_004128172.1 CDS Alide_3568 NC_014910.1 3719835 3720188 D KEGG: sbn:Sbal195_0751 hypothetical protein; hypothetical protein 3719835..3720188 Alicycliphilus denitrificans BC 10105642 YP_004128173.1 CDS Alide_3569 NC_014910.1 3720275 3720787 R PFAM: Protein of unknown function DUF2511; KEGG: pna:Pnap_2266 hypothetical protein; hypothetical protein complement(3720275..3720787) Alicycliphilus denitrificans BC 10105643 YP_004128174.1 CDS Alide_3570 NC_014910.1 3720896 3721111 D KEGG: mva:Mvan_4791 OsmC family protein; hypothetical protein 3720896..3721111 Alicycliphilus denitrificans BC 10105644 YP_004128175.1 CDS Alide_3571 NC_014910.1 3721108 3721410 D KEGG: tbi:Tbis_2085 LuxR family ATP-dependent transcriptional regulator; hypothetical protein 3721108..3721410 Alicycliphilus denitrificans BC 10105645 YP_004128176.1 CDS Alide_3572 NC_014910.1 3721446 3721901 R KEGG: xfn:XfasM23_1198 hypothetical protein; hypothetical protein complement(3721446..3721901) Alicycliphilus denitrificans BC 10105646 YP_004128177.1 CDS Alide_3573 NC_014910.1 3722159 3722584 D KEGG: cyc:PCC7424_3069 transcriptional regulator, XRE family; hypothetical protein 3722159..3722584 Alicycliphilus denitrificans BC 10105647 YP_004128178.1 CDS Alide_3574 NC_014910.1 3722627 3723169 D KEGG: mag:amb1496 hypothetical protein; hypothetical protein 3722627..3723169 Alicycliphilus denitrificans BC 10105648 YP_004128179.1 CDS Alide_3575 NC_014910.1 3723209 3723754 D KEGG: rpi:Rpic_2348 hypothetical protein; hypothetical protein 3723209..3723754 Alicycliphilus denitrificans BC 10105649 YP_004128180.1 CDS Alide_3576 NC_014910.1 3723751 3723954 D KEGG: fal:FRAAL1878 hypothetical protein; hypothetical protein 3723751..3723954 Alicycliphilus denitrificans BC 10105650 YP_004128181.1 CDS Alide_3577 NC_014910.1 3723951 3724181 D KEGG: msm:MSMEG_0978 aminotransferase, class V superfamily protein; hypothetical protein 3723951..3724181 Alicycliphilus denitrificans BC 10105651 YP_004128182.1 CDS Alide_3578 NC_014910.1 3724226 3724579 D KEGG: ypy:YPK_1206 hypothetical protein; hypothetical protein 3724226..3724579 Alicycliphilus denitrificans BC 10105652 YP_004128183.1 CDS Alide_3579 NC_014910.1 3724576 3725442 D PFAM: Protein of unknown function DUF2303; KEGG: nhl:Nhal_0958 hypothetical protein; hypothetical protein 3724576..3725442 Alicycliphilus denitrificans BC 10105653 YP_004128184.1 CDS Alide_3580 NC_014910.1 3725483 3725842 D KEGG: pna:Pnap_2272 hypothetical protein; hypothetical protein 3725483..3725842 Alicycliphilus denitrificans BC 10105654 YP_004128185.1 CDS Alide_3581 NC_014910.1 3725868 3726272 D KEGG: nhl:Nhal_0985 hypothetical protein; hypothetical protein 3725868..3726272 Alicycliphilus denitrificans BC 10105655 YP_004128186.1 CDS Alide_3582 NC_014910.1 3726269 3727264 D KEGG: met:M446_4802 helicase domain-containing protein; hypothetical protein 3726269..3727264 Alicycliphilus denitrificans BC 10105656 YP_004128187.1 CDS Alide_3583 NC_014910.1 3727261 3727890 D KEGG: aav:Aave_1670 hypothetical protein; hypothetical protein 3727261..3727890 Alicycliphilus denitrificans BC 10105657 YP_004128188.1 CDS Alide_3584 NC_014910.1 3727887 3728432 D KEGG: pna:Pnap_3326 hypothetical protein; hypothetical protein 3727887..3728432 Alicycliphilus denitrificans BC 10105658 YP_004128189.1 CDS Alide_3585 NC_014910.1 3728445 3729059 D KEGG: rpi:Rpic_2348 hypothetical protein; hypothetical protein 3728445..3729059 Alicycliphilus denitrificans BC 10105659 YP_004128190.1 CDS Alide_3586 NC_014910.1 3729113 3729505 D KEGG: bgl:bglu_1g15260 hypothetical protein; hypothetical protein 3729113..3729505 Alicycliphilus denitrificans BC 10105660 YP_004128191.1 CDS Alide_3587 NC_014910.1 3729772 3730908 D KEGG: slt:Slit_0203 retron-type reverse transcriptase; retron-type reverse transcriptase 3729772..3730908 Alicycliphilus denitrificans BC 10105661 YP_004128192.1 CDS Alide_3588 NC_014910.1 3730905 3731951 D PFAM: Gp37Gp68 family protein; KEGG: bpm:BURPS1710b_1658 GP38; gp37gp68 family protein 3730905..3731951 Alicycliphilus denitrificans BC 10105662 YP_004128193.1 CDS Alide_3589 NC_014910.1 3731948 3732280 D KEGG: ppp:PHYPADRAFT_20818 hypothetical protein; hypothetical protein 3731948..3732280 Alicycliphilus denitrificans BC 10105663 YP_004128194.1 CDS Alide_3590 NC_014910.1 3732288 3734348 D PFAM: C-5 cytosine-specific DNA methylase; KEGG: aav:Aave_1680 C-5 cytosine-specific DNA methylase; c-5 cytosine-specific DNA methylase 3732288..3734348 Alicycliphilus denitrificans BC 10105664 YP_004128195.1 CDS Alide_3591 NC_014910.1 3734345 3734464 D hypothetical protein 3734345..3734464 Alicycliphilus denitrificans BC 10105665 YP_004128196.1 CDS Alide_3592 NC_014910.1 3734474 3734728 D KEGG: bpy:Bphyt_1156 hypothetical protein; hypothetical protein 3734474..3734728 Alicycliphilus denitrificans BC 10105666 YP_004128197.1 CDS Alide_3593 NC_014910.1 3734725 3735777 R PFAM: integrase family protein; KEGG: eba:ebA29 phage integrase; integrase family protein complement(3734725..3735777) Alicycliphilus denitrificans BC 10105667 YP_004128198.1 CDS Alide_3595 NC_014910.1 3737968 3738732 D KEGG: ngr:NAEGRDRAFT_75750 hypothetical protein; hypothetical protein 3737968..3738732 Alicycliphilus denitrificans BC 10105670 YP_004128199.1 CDS Alide_3596 NC_014910.1 3738758 3739435 R KEGG: dsy:DSY3857 hypothetical protein; hypothetical protein complement(3738758..3739435) Alicycliphilus denitrificans BC 10105671 YP_004128200.1 CDS Alide_3597 NC_014910.1 3739847 3739984 D hypothetical protein 3739847..3739984 Alicycliphilus denitrificans BC 10105672 YP_004128201.1 CDS Alide_3598 NC_014910.1 3740148 3740423 D KEGG: rbe:RBE_0670 hypothetical protein; hypothetical protein 3740148..3740423 Alicycliphilus denitrificans BC 10105673 YP_004128202.1 CDS Alide_3599 NC_014910.1 3740553 3740909 D manually curated; PFAM: helix-turn-helix domain protein; KEGG: bte:BTH_I2733 helix-turn-helix domain-containing protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 3740553..3740909 Alicycliphilus denitrificans BC 10105674 YP_004128203.1 CDS Alide_3600 NC_014910.1 3741094 3741276 R KEGG: cpi:Cpin_2216 hypothetical protein; hypothetical protein complement(3741094..3741276) Alicycliphilus denitrificans BC 10105675 YP_004128204.1 CDS Alide_3601 NC_014910.1 3742693 3744111 D PFAM: Relaxase/mobilization nuclease family protein; KEGG: rpi:Rpic_0452 relaxase/mobilization nuclease family protein; relaxase/mobilization nuclease family protein 3742693..3744111 Alicycliphilus denitrificans BC 10105676 YP_004128205.1 CDS Alide_3602 NC_014910.1 3744160 3744522 D manually curated; KEGG: bid:Bind_0669 hypothetical protein; hypothetical protein 3744160..3744522 Alicycliphilus denitrificans BC 10105677 YP_004128206.1 CDS Alide_3603 NC_014910.1 3744546 3745481 R KEGG: sit:TM1040_1587 DNA adenine methylase Dam; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase complement(3744546..3745481) Alicycliphilus denitrificans BC 10105678 YP_004128207.1 CDS Alide_3604 NC_014910.1 3745535 3746362 D KEGG: mgm:Mmc1_1280 hypothetical protein; hypothetical protein 3745535..3746362 Alicycliphilus denitrificans BC 10105679 YP_004128208.1 CDS Alide_3605 NC_014910.1 3746391 3747548 R PFAM: integrase family protein; KEGG: mms:mma_2533 phage integrase/recombinase; integrase family protein complement(3746391..3747548) Alicycliphilus denitrificans BC 10105680 YP_004128209.1 CDS Alide_3606 NC_014910.1 3747751 3748650 R KEGG: avn:Avin_00950 cytochrome oxidase assembly protein; cytochrome oxidase assembly protein complement(3747751..3748650) Alicycliphilus denitrificans BC 10105681 YP_004128210.1 CDS Alide_3607 NC_014910.1 3748917 3749069 D KEGG: mag:amb2220 hypothetical protein; hypothetical protein 3748917..3749069 Alicycliphilus denitrificans BC 10105682 YP_004128211.1 CDS Alide_3608 NC_014910.1 3749083 3749622 D PFAM: cytochrome c oxidase subunit II; KEGG: app:CAP2UW1_1791 cytochrome c oxidase subunit II; cytochrome c oxidase subunit ii 3749083..3749622 Alicycliphilus denitrificans BC 10105683 YP_004128212.1 CDS Alide_3609 NC_014910.1 3749636 3751336 D KEGG: app:CAP2UW1_1790 cytochrome c oxidase subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome-c oxidase 3749636..3751336 Alicycliphilus denitrificans BC 10105684 YP_004128213.1 CDS Alide_3610 NC_014910.1 3751354 3752256 D KEGG: app:CAP2UW1_1789 protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 3751354..3752256 Alicycliphilus denitrificans BC 10105685 YP_004128214.1 CDS Alide_3611 NC_014910.1 3752274 3753131 D PFAM: Redoxin domain protein; KEGG: app:CAP2UW1_1788 electron transport protein SCO1/SenC; redoxin domain-containing protein 3752274..3753131 Alicycliphilus denitrificans BC 10105686 YP_004128215.1 CDS Alide_3612 NC_014910.1 3753146 3754729 D PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: app:CAP2UW1_1327 methyl-viologen-reducing hydrogenase delta subunit; methyl-viologen-reducing hydrogenase subunit delta 3753146..3754729 Alicycliphilus denitrificans BC 10105687 YP_004128216.1 CDS Alide_3613 NC_014910.1 3754726 3755229 D KEGG: app:CAP2UW1_1325 hypothetical protein; hypothetical protein 3754726..3755229 Alicycliphilus denitrificans BC 10105688 YP_004128217.1 CDS Alide_3614 NC_014910.1 3755226 3756674 D KEGG: app:CAP2UW1_3424 cytochrome c oxidase, subunit I; cytochrome c oxidase, subunit i 3755226..3756674 Alicycliphilus denitrificans BC 10105689 YP_004128218.1 CDS Alide_3615 NC_014910.1 3756671 3758599 D PFAM: Oxidoreductase FAD-binding domain protein; ferredoxin; Cytochrome b/b6 domain; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: app:CAP2UW1_1324 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding domain-containing protein 3756671..3758599 Alicycliphilus denitrificans BC 10105690 YP_004128219.1 CDS Alide_3616 NC_014910.1 3758615 3760018 R PFAM: phospholipase D/Transphosphatidylase; KEGG: ajs:Ajs_3563 cardiolipin synthetase 2; phospholipase d/transphosphatidylase complement(3758615..3760018) Alicycliphilus denitrificans BC 10105691 YP_004128220.1 CDS Alide_3617 NC_014910.1 3760015 3761391 R KEGG: aav:Aave_3963 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein complement(3760015..3761391) Alicycliphilus denitrificans BC 10105692 YP_004128221.1 CDS Alide_3618 NC_014910.1 3761388 3762056 R KEGG: vap:Vapar_2384 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver complement(3761388..3762056) Alicycliphilus denitrificans BC 10105693 YP_004128222.1 CDS Alide_3619 NC_014910.1 3762085 3763593 R SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: aav:Aave_3965 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(3762085..3763593) Alicycliphilus denitrificans BC 10105694 YP_004128223.1 CDS Alide_3620 NC_014910.1 3763660 3764010 R KEGG: ajs:Ajs_3564 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase complement(3763660..3764010) Alicycliphilus denitrificans BC 10105695 YP_004128224.1 CDS Alide_3621 NC_014910.1 3764026 3765687 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3565 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3764026..3765687) Alicycliphilus denitrificans BC 10105696 YP_004128225.1 CDS Alide_3622 NC_014910.1 3765759 3766823 D KEGG: ajs:Ajs_3566 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 3765759..3766823 Alicycliphilus denitrificans BC 10105697 YP_004128226.1 CDS Alide_3623 NC_014910.1 3766826 3767566 R KEGG: dia:Dtpsy_2891 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(3766826..3767566) Alicycliphilus denitrificans BC 10105698 YP_004128227.1 CDS Alide_3624 NC_014910.1 3767577 3768872 R PFAM: amidohydrolase; KEGG: dia:Dtpsy_2892 amidohydrolase; amidohydrolase complement(3767577..3768872) Alicycliphilus denitrificans BC 10105699 YP_004128228.1 CDS Alide_3625 NC_014910.1 3768940 3769902 R KEGG: dia:Dtpsy_2893 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate carbamoyltransferase complement(3768940..3769902) Alicycliphilus denitrificans BC 10105700 YP_004128229.1 CDS Alide_3626 NC_014910.1 3769905 3770441 R KEGG: dia:Dtpsy_2894 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase complement(3769905..3770441) Alicycliphilus denitrificans BC 10105701 YP_004128230.1 CDS Alide_3627 NC_014910.1 3770438 3770851 R KEGG: dia:Dtpsy_2895 Holliday junction resolvase-like protein; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; holliday junction resolvase yqgf complement(3770438..3770851) Alicycliphilus denitrificans BC 10105702 YP_004128231.1 CDS Alide_3628 NC_014910.1 3770848 3771474 R KEGG: dia:Dtpsy_2896 protein of unknown function DUF179; manually curated; PFAM: protein of unknown function DUF179; hypothetical protein complement(3770848..3771474) Alicycliphilus denitrificans BC 10105703 YP_004128232.1 CDS Alide_3629 NC_014910.1 3771563 3777406 R KEGG: dia:Dtpsy_2897 CheA signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein; response regulator receiver complement(3771563..3777406) Alicycliphilus denitrificans BC 10105704 YP_004128233.1 CDS Alide_3630 NC_014910.1 3777450 3779714 R KEGG: dia:Dtpsy_2898 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; chemotaxis sensory transducer protein complement(3777450..3779714) Alicycliphilus denitrificans BC 10105705 YP_004128234.1 CDS Alide_3631 NC_014910.1 3779735 3780262 R KEGG: ajs:Ajs_3576 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; chemotaxis protein CheW complement(3779735..3780262) Alicycliphilus denitrificans BC 10105706 YP_004128235.1 CDS Alide_3632 NC_014910.1 3780279 3780644 R KEGG: dia:Dtpsy_2900 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver complement(3780279..3780644) Alicycliphilus denitrificans BC 10105707 YP_004128236.1 CDS Alide_3633 NC_014910.1 3780644 3781048 R KEGG: aav:Aave_0901 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver complement(3780644..3781048) Alicycliphilus denitrificans BC 10105708 YP_004128237.1 CDS Alide_3634 NC_014910.1 3781100 3781252 R KEGG: dia:Dtpsy_2902 rubredoxin-type Fe(Cys)4 protein; manually curated; PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type fe(cys)4 protein complement(3781100..3781252) Alicycliphilus denitrificans BC 10105709 YP_004128238.1 CDS Alide_3635 NC_014910.1 3781413 3782315 D PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dia:Dtpsy_2903 phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase type-1 3781413..3782315 Alicycliphilus denitrificans BC 10105710 YP_004128239.1 CDS Alide_3636 NC_014910.1 3782299 3783603 D KEGG: dia:Dtpsy_2904 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; glutamate-1-semialdehyde-2,1-aminomutase 3782299..3783603 Alicycliphilus denitrificans BC 10105711 YP_004128240.1 CDS Alide_3637 NC_014910.1 3783705 3785303 R SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: dia:Dtpsy_2907 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase complement(3783705..3785303) Alicycliphilus denitrificans BC 10105712 YP_004128241.1 CDS Alide_3638 NC_014910.1 3785385 3785621 R PFAM: helix-turn-helix Fis-type; KEGG: dia:Dtpsy_2908 transcriptional regulator, fis family; helix-turn-helix fis-type complement(3785385..3785621) Alicycliphilus denitrificans BC 10105713 YP_004128242.1 CDS Alide_3639 NC_014910.1 3785599 3786657 R KEGG: dia:Dtpsy_2909 TIM-barrel protein, nifR3 family; TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; tim-barrel protein, nifr3 family complement(3785599..3786657) Alicycliphilus denitrificans BC 10105714 YP_004128243.1 CDS Alide_3640 NC_014910.1 3786806 3787315 D KEGG: dia:Dtpsy_2910 hypothetical protein; hypothetical protein 3786806..3787315 Alicycliphilus denitrificans BC 10105715 YP_004128244.1 CDS Alide_3641 NC_014910.1 3787322 3788296 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dia:Dtpsy_2911 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3787322..3788296) Alicycliphilus denitrificans BC 10105716 YP_004128245.1 CDS Alide_3642 NC_014910.1 3788492 3789499 D KEGG: dia:Dtpsy_2912 hypothetical protein; hypothetical protein 3788492..3789499 Alicycliphilus denitrificans BC 10105717 YP_004128246.1 CDS Alide_3643 NC_014910.1 3789513 3790958 D KEGG: dia:Dtpsy_2913 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase dimerisation domain protein; amidohydrolase 3789513..3790958 Alicycliphilus denitrificans BC 10105718 YP_004128247.1 CDS Alide_3644 NC_014910.1 3791014 3792525 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: dia:Dtpsy_2745 protein of unknown function DUF112 transmembrane; hypothetical protein complement(3791014..3792525) Alicycliphilus denitrificans BC 10105719 YP_004128248.1 CDS Alide_3645 NC_014910.1 3792559 3793047 R KEGG: vap:Vapar_0318 protein of unknown function DUF1468; hypothetical protein complement(3792559..3793047) Alicycliphilus denitrificans BC 10105720 YP_004128249.1 CDS Alide_3646 NC_014910.1 3793243 3794625 R KEGG: mms:mma_0288 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein complement(3793243..3794625) Alicycliphilus denitrificans BC 10105721 YP_004128250.1 CDS Alide_3647 NC_014910.1 3794622 3795314 R KEGG: bpt:Bpet1596 two-component transcriptional regulator; PFAM: transcriptional regulator domain-containing protein; response regulator receiver; SMART: response regulator receiver; transcriptional regulator domain-containing protein complement(3794622..3795314) Alicycliphilus denitrificans BC 10105722 YP_004128251.1 CDS Alide_3648 NC_014910.1 3795324 3796418 R KEGG: dia:Dtpsy_2928 GTP-binding protein YchF; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; GTP-binding protein YchF complement(3795324..3796418) Alicycliphilus denitrificans BC 10105723 YP_004128252.1 CDS Alide_3649 NC_014910.1 3796560 3797690 D KEGG: ajs:Ajs_3620 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase; ubiquinone biosynthesis hydroxylase, ubih/ubif/visc/coq6 family 3796560..3797690 Alicycliphilus denitrificans BC 10105724 YP_004128253.1 CDS Alide_3650 NC_014910.1 3797734 3798453 D PFAM: Disulphide bond isomerase, DsbC/G-like; KEGG: ajs:Ajs_3621 thiol:disulfide interchange protein DsbC; disulfide bond isomerase, dsbc/g-like protein 3797734..3798453 Alicycliphilus denitrificans BC 10105725 YP_004128254.1 CDS Alide_3651 NC_014910.1 3798598 3800379 D PFAM: peptidase M61 domain protein; KEGG: ajs:Ajs_3622 peptidase M61 domain-containing protein; peptidase m61 domain-containing protein 3798598..3800379 Alicycliphilus denitrificans BC 10105726 YP_004128255.1 CDS Alide_3652 NC_014910.1 3800437 3801216 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3623 short chain enoyl-CoA hydratase; enoyl-CoA hydratase 3800437..3801216 Alicycliphilus denitrificans BC 10105727 YP_004128256.1 CDS Alide_3653 NC_014910.1 3801400 3801801 D KEGG: aav:Aave_0876 hypothetical protein; hypothetical protein 3801400..3801801 Alicycliphilus denitrificans BC 10105729 YP_004128257.1 CDS Alide_3654 NC_014910.1 3801869 3803218 D TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: dia:Dtpsy_2935 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)a37 thiotransferase enzyme miab 3801869..3803218 Alicycliphilus denitrificans BC 10105730 YP_004128258.1 CDS Alide_3655 NC_014910.1 3803263 3804642 R TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; KEGG: ajs:Ajs_3626 signal recognition particle subunit FFH/SRP54 (SRP54); SMART: AAA ATPase; signal recognition particle protein complement(3803263..3804642) Alicycliphilus denitrificans BC 10105731 YP_004128259.1 CDS Alide_3656 NC_014910.1 3804732 3805529 D PFAM: cytochrome c assembly protein; KEGG: dia:Dtpsy_2937 cytochrome c assembly protein; cytochrome c assembly protein 3804732..3805529 Alicycliphilus denitrificans BC 10105732 YP_004128260.1 CDS Alide_3657 NC_014910.1 3805526 3805753 D KEGG: dia:Dtpsy_2938 hypothetical protein; hypothetical protein 3805526..3805753 Alicycliphilus denitrificans BC 10105733 YP_004128261.1 CDS Alide_3658 NC_014910.1 3805766 3807469 D KEGG: dia:Dtpsy_2939 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 3805766..3807469 Alicycliphilus denitrificans BC 10105734 YP_004128262.1 CDS Alide_3659 NC_014910.1 3807486 3808976 D KEGG: dia:Dtpsy_2940 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; sigma-54 factor interaction domain-containing protein 3807486..3808976 Alicycliphilus denitrificans BC 10105735 YP_004128263.1 CDS Alide_3660 NC_014910.1 3808960 3809541 D KEGG: dia:Dtpsy_2941 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; N-acetylmuramoyl-L-alanine amidase 3808960..3809541 Alicycliphilus denitrificans BC 10105736 YP_004128264.1 CDS Alide_3661 NC_014910.1 3809826 3812738 D KEGG: ajs:Ajs_3632 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ATP-cone domain protein; ribonucleoside-diphosphate reductase subunit alpha 3809826..3812738 Alicycliphilus denitrificans BC 10105737 YP_004128265.1 CDS Alide_3662 NC_014910.1 3812877 3814067 D KEGG: dia:Dtpsy_2943 ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase; ribonucleoside-diphosphate reductase 3812877..3814067 Alicycliphilus denitrificans BC 10105738 YP_004128266.1 CDS Alide_3663 NC_014910.1 3814247 3814795 D KEGG: dia:Dtpsy_2944 histone protein; histone protein 3814247..3814795 Alicycliphilus denitrificans BC 10105739 YP_004128267.1 CDS Alide_3664 NC_014910.1 3814878 3815774 R PFAM: PfkB domain protein; KEGG: dia:Dtpsy_2945 PfkB domain protein; pfkb domain-containing protein complement(3814878..3815774) Alicycliphilus denitrificans BC 10105740 YP_004128268.1 CDS Alide_3665 NC_014910.1 3815809 3816963 R TIGRFAM: MJ0042 family finger-like protein; KEGG: dia:Dtpsy_2946 MJ0042 family finger-like protein; mj0042 family finger-like protein complement(3815809..3816963) Alicycliphilus denitrificans BC 10105741 YP_004128269.1 CDS Alide_3666 NC_014910.1 3817017 3817913 R KEGG: ajs:Ajs_3637 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; 50S ribosomal protein L11 methyltransferase complement(3817017..3817913) Alicycliphilus denitrificans BC 10105742 YP_004128270.1 CDS Alide_3667 NC_014910.1 3818006 3819355 R KEGG: ajs:Ajs_3638 acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; acetyl-CoA carboxylase, biotin carboxylase complement(3818006..3819355) Alicycliphilus denitrificans BC 10105743 YP_004128271.1 CDS Alide_3668 NC_014910.1 3819371 3819829 R KEGG: dia:Dtpsy_2949 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(3819371..3819829) Alicycliphilus denitrificans BC 10105744 YP_004128272.1 CDS Alide_3669 NC_014910.1 3819940 3820515 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dia:Dtpsy_2950 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase complement(3819940..3820515) Alicycliphilus denitrificans BC 10105745 YP_004128273.1 CDS Alide_3670 NC_014910.1 3820512 3821126 R KEGG: ajs:Ajs_3641 hypothetical protein; hypothetical protein complement(3820512..3821126) Alicycliphilus denitrificans BC 10105746 YP_004128274.1 CDS Alide_3671 NC_014910.1 3821242 3822633 D manually curated; TIGRFAM: UDP-N-acetylmuramate; KEGG: ajs:Ajs_3642 UDP-N-acetylmuramate; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; udp-n-acetylmuramate 3821242..3822633 Alicycliphilus denitrificans BC 10105747 YP_004128275.1 CDS Alide_3672 NC_014910.1 3822681 3822992 R KEGG: dia:Dtpsy_2953 hypothetical protein; hypothetical protein complement(3822681..3822992) Alicycliphilus denitrificans BC 10105748 YP_004128276.1 CDS Alide_3673 NC_014910.1 3823078 3824196 R TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: dia:Dtpsy_2954 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3823078..3824196) Alicycliphilus denitrificans BC 10105749 YP_004128277.1 CDS Alide_3674 NC_014910.1 3824437 3825897 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: dia:Dtpsy_2956 peptidase U62 modulator of DNA gyrase; peptidase u62 modulator of DNA gyrase complement(3824437..3825897) Alicycliphilus denitrificans BC 10105750 YP_004128278.1 CDS Alide_3675 NC_014910.1 3825936 3827117 R KEGG: dia:Dtpsy_2957 rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; rod shape-determining protein roda complement(3825936..3827117) Alicycliphilus denitrificans BC 10105751 YP_004128279.1 CDS Alide_3676 NC_014910.1 3827153 3827740 D PFAM: protein of unknown function UPF0227; KEGG: ajs:Ajs_3649 hypothetical protein; hypothetical protein 3827153..3827740 Alicycliphilus denitrificans BC 10105752 YP_004128280.1 CDS Alide_3677 NC_014910.1 3827843 3829402 R PFAM: O-antigen polymerase; KEGG: dia:Dtpsy_2960 O-antigen polymerase; o-antigen polymerase complement(3827843..3829402) Alicycliphilus denitrificans BC 10105753 YP_004128281.1 CDS Alide_3678 NC_014910.1 3829552 3829965 R PFAM: cytochrome c class I; KEGG: dia:Dtpsy_2961 cytochrome c class I; cytochrome c class i complement(3829552..3829965) Alicycliphilus denitrificans BC 10105754 YP_004128282.1 CDS Alide_3679 NC_014910.1 3829962 3830543 R KEGG: ajs:Ajs_3652 hypothetical protein; hypothetical protein complement(3829962..3830543) Alicycliphilus denitrificans BC 10105755 YP_004128283.1 CDS Alide_3680 NC_014910.1 3830632 3831351 R KEGG: dia:Dtpsy_2963 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 family RNA polymerase sigma factor complement(3830632..3831351) Alicycliphilus denitrificans BC 10105756 YP_004128284.1 CDS Alide_3681 NC_014910.1 3831475 3833553 D PFAM: ribonuclease II; KEGG: ajs:Ajs_3654 ribonuclease II; ribonuclease ii 3831475..3833553 Alicycliphilus denitrificans BC 10105757 YP_004128285.1 CDS Alide_3682 NC_014910.1 3833563 3834423 D TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein; tonb family protein 3833563..3834423 Alicycliphilus denitrificans BC 10105758 YP_004128286.1 CDS Alide_3683 NC_014910.1 3834430 3835278 D KEGG: ajs:Ajs_3656 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; shikimate 5-dehydrogenase 3834430..3835278 Alicycliphilus denitrificans BC 10105759 YP_004128287.1 CDS Alide_3684 NC_014910.1 3835292 3836008 D KEGG: ajs:Ajs_3657 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; monofunctional biosynthetic peptidoglycan transglycosylase 3835292..3836008 Alicycliphilus denitrificans BC 10105760 YP_004128288.1 CDS Alide_3685 NC_014910.1 3836032 3836358 D KEGG: rso:RSc1775 hemagglutinin-related protein; hemagglutinin-like protein 3836032..3836358 Alicycliphilus denitrificans BC 10105761 YP_004128289.1 CDS Alide_3686 NC_014910.1 3836512 3837324 R PFAM: Integrase catalytic region; KEGG: ajs:Ajs_3784 integrase catalytic subunit; integrase catalytic region protein complement(3836512..3837324) Alicycliphilus denitrificans BC 10105762 YP_004128290.1 CDS Alide_3687 NC_014910.1 3837342 3837608 R PFAM: transposase IS3/IS911 family protein; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911; transposase is3/is911 family protein complement(3837342..3837608) Alicycliphilus denitrificans BC 10105763 YP_004128291.1 CDS Alide_3688 NC_014910.1 3837961 3838509 D TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: dia:Dtpsy_2968 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease ruvc 3837961..3838509 Alicycliphilus denitrificans BC 10105764 YP_004128292.1 CDS Alide_3689 NC_014910.1 3838512 3839210 R PFAM: helix-turn-helix HxlR type; KEGG: mlo:mlr1855 hypothetical protein; helix-turn-helix hxlr type complement(3838512..3839210) Alicycliphilus denitrificans BC 10105765 YP_004128293.1 CDS Alide_3690 NC_014910.1 3839638 3840459 D PFAM: Methyltransferase type 11; KEGG: acp:A2cp1_1683 methyltransferase type 11; type 11 methyltransferase 3839638..3840459 Alicycliphilus denitrificans BC 10105766 YP_004128294.1 CDS Alide_3691 NC_014910.1 3840471 3842318 R KEGG: dia:Dtpsy_2971 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; thiamine biosynthesis protein thic complement(3840471..3842318) Alicycliphilus denitrificans BC 10105767 YP_004128295.1 CDS Alide_3692 NC_014910.1 3842555 3842731 R KEGG: dia:Dtpsy_2972 hypothetical protein; hypothetical protein complement(3842555..3842731) Alicycliphilus denitrificans BC 10105768 YP_004128296.1 CDS Alide_3693 NC_014910.1 3842741 3843664 R KEGG: dia:Dtpsy_2973 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; udp-3-0-acyl n-acetylglucosamine deacetylase complement(3842741..3843664) Alicycliphilus denitrificans BC 10105769 YP_004128297.1 CDS Alide_3694 NC_014910.1 3843704 3844468 R KEGG: bav:BAV0211 IclR-family transcriptional regulator; PFAM: regulatory protein IclR; SMART: regulatory protein IclR; regulatory protein iclr complement(3843704..3844468) Alicycliphilus denitrificans BC 10105770 YP_004128298.1 CDS Alide_3695 NC_014910.1 3844558 3845640 D KEGG: aav:Aave_3942 hypothetical protein; hypothetical protein 3844558..3845640 Alicycliphilus denitrificans BC 10105771 YP_004128299.1 CDS Alide_3696 NC_014910.1 3845652 3847370 D PFAM: AMP-dependent synthetase and ligase; KEGG: bpt:Bpet0794 acyl-CoA synthetase; AMP-dependent synthetase/ligase 3845652..3847370 Alicycliphilus denitrificans BC 10105772 YP_004128300.1 CDS Alide_3697 NC_014910.1 3847367 3848110 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB4035 oxidoreductase; short-chain dehydrogenase/reductase sdr 3847367..3848110 Alicycliphilus denitrificans BC 10105773 YP_004128301.1 CDS Alide_3698 NC_014910.1 3848184 3849389 D PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_B3887 UreA/short-chain amide ABC transporter; ABC transporter substrate-binding protein 3848184..3849389 Alicycliphilus denitrificans BC 10105774 YP_004128302.1 CDS Alide_3699 NC_014910.1 3849406 3850368 D KEGG: bav:BAV0225 exported protein; hypothetical protein 3849406..3850368 Alicycliphilus denitrificans BC 10105775 YP_004128303.1 CDS Alide_3700 NC_014910.1 3850372 3851571 D PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bav:BAV0226 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3850372..3851571 Alicycliphilus denitrificans BC 10105776 YP_004128304.1 CDS Alide_3701 NC_014910.1 3851652 3852872 R KEGG: dia:Dtpsy_2975 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; cell division protein ftsz complement(3851652..3852872) Alicycliphilus denitrificans BC 10105777 YP_004128305.1 CDS Alide_3702 NC_014910.1 3853044 3854273 R KEGG: dia:Dtpsy_2976 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; cell division protein ftsa complement(3853044..3854273) Alicycliphilus denitrificans BC 10105778 YP_004128306.1 CDS Alide_3703 NC_014910.1 3854279 3855151 R PFAM: Polypeptide-transport-associated domain protein FtsQ-type; cell division protein FtsQ; KEGG: dia:Dtpsy_2977 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein ftsq-type complement(3854279..3855151) Alicycliphilus denitrificans BC 10105779 YP_004128307.1 CDS Alide_3704 NC_014910.1 3855156 3856124 R TIGRFAM: D-alanine/D-alanine ligase; KEGG: ajs:Ajs_3668 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; d-alanine/d-alanine ligase complement(3855156..3856124) Alicycliphilus denitrificans BC 10105780 YP_004128308.1 CDS Alide_3705 NC_014910.1 3856121 3857554 R KEGG: dia:Dtpsy_2979 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; udp-n-acetylmuramate/alanine ligase complement(3856121..3857554) Alicycliphilus denitrificans BC 10105781 YP_004128309.1 CDS Alide_3706 NC_014910.1 3857551 3858615 R KEGG: aav:Aave_0821 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase complement(3857551..3858615) Alicycliphilus denitrificans BC 10105782 YP_004128310.1 CDS Alide_3707 NC_014910.1 3858612 3859883 R KEGG: ajs:Ajs_3671 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; cell division protein ftsw complement(3858612..3859883) Alicycliphilus denitrificans BC 10105783 YP_004128311.1 CDS Alide_3708 NC_014910.1 3859880 3861661 R KEGG: dia:Dtpsy_2982 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; udp-n-acetylmuramoylalanine/d-glutamate ligase complement(3859880..3861661) Alicycliphilus denitrificans BC 10105784 YP_004128312.1 CDS Alide_3709 NC_014910.1 3861658 3862836 R KEGG: dia:Dtpsy_2983 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-n-acetylmuramoyl-pentapeptide- transferase complement(3861658..3862836) Alicycliphilus denitrificans BC 10105785 YP_004128313.1 CDS Alide_3710 NC_014910.1 3862827 3864218 R KEGG: ajs:Ajs_3674 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase complement(3862827..3864218) Alicycliphilus denitrificans BC 10105786 YP_004128314.1 CDS Alide_3711 NC_014910.1 3864215 3865720 R KEGG: dia:Dtpsy_2985 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; udp-n-acetylmuramyl-tripeptide synthetase complement(3864215..3865720) Alicycliphilus denitrificans BC 10105787 YP_004128315.1 CDS Alide_3712 NC_014910.1 3865717 3867465 R KEGG: dia:Dtpsy_2986 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; peptidoglycan glycosyltransferase complement(3865717..3867465) Alicycliphilus denitrificans BC 10105788 YP_004128316.1 CDS Alide_3713 NC_014910.1 3867462 3867776 R KEGG: aav:Aave_0814 cell division protein FtsL; TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; cell division protein ftsl complement(3867462..3867776) Alicycliphilus denitrificans BC 10105789 YP_004128317.1 CDS Alide_3714 NC_014910.1 3867773 3868699 R KEGG: dia:Dtpsy_2988 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; s-adenosyl-methyltransferase mraw complement(3867773..3868699) Alicycliphilus denitrificans BC 10105790 YP_004128318.1 CDS Alide_3715 NC_014910.1 3868709 3869137 R KEGG: dia:Dtpsy_2989 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain; mraz protein complement(3868709..3869137) Alicycliphilus denitrificans BC 10105791 YP_004128319.1 CDS Alide_3716 NC_014910.1 3869383 3870687 R TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; KEGG: dia:Dtpsy_2990 ATP-dependent protease ATP-binding subunit HslU; SMART: AAA ATPase; heat shock protein hslvu, atpase subunit hslu complement(3869383..3870687) Alicycliphilus denitrificans BC 10105792 YP_004128320.1 CDS Alide_3717 NC_014910.1 3870774 3871319 R PFAM: 20S proteasome A and B subunits; KEGG: dia:Dtpsy_2991 ATP-dependent protease peptidase subunit; 20S proteasome subunits A/B complement(3870774..3871319) Alicycliphilus denitrificans BC 10105793 YP_004128321.1 CDS Alide_3718 NC_014910.1 3871380 3873116 R KEGG: dia:Dtpsy_2992 hypothetical protein; hypothetical protein complement(3871380..3873116) Alicycliphilus denitrificans BC 10105794 YP_004128322.1 CDS Alide_3719 NC_014910.1 3873148 3873639 R TIGRFAM: RNA polymerase-binding protein DksA; KEGG: dia:Dtpsy_2993 transcriptional regulator, TraR/DksA family; RNA polymerase-binding protein dksa complement(3873148..3873639) Alicycliphilus denitrificans BC 10105795 YP_004128323.1 CDS Alide_3720 NC_014910.1 3873990 3875060 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: dia:Dtpsy_2994 cobalamin synthesis protein P47K; cobalamin synthesis protein p47k complement(3873990..3875060) Alicycliphilus denitrificans BC 10105796 YP_004128324.1 CDS Alide_3721 NC_014910.1 3875153 3876268 R KEGG: dac:Daci_1875 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver complement(3875153..3876268) Alicycliphilus denitrificans BC 10105797 YP_004128325.1 CDS Alide_3722 NC_014910.1 3876261 3876935 R TIGRFAM: DNA binding domain protein, excisionase family; PFAM: response regulator receiver; regulatory protein MerR; KEGG: dac:Daci_1874 response regulator receiver protein; SMART: response regulator receiver; excisionase family DNA binding domain-containing protein complement(3876261..3876935) Alicycliphilus denitrificans BC 10105798 YP_004128326.1 CDS Alide_3723 NC_014910.1 3877016 3877402 D KEGG: ctt:CtCNB1_1998 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 3877016..3877402 Alicycliphilus denitrificans BC 10105799 YP_004128327.1 CDS Alide_3725 NC_014910.1 3879964 3880632 R TIGRFAM: DNA binding domain protein, excisionase family; PFAM: response regulator receiver; regulatory protein MerR; KEGG: aav:Aave_2239 response regulator receiver protein; SMART: response regulator receiver; excisionase family DNA binding domain-containing protein complement(3879964..3880632) Alicycliphilus denitrificans BC 10105801 YP_004128328.1 CDS Alide_3726 NC_014910.1 3880697 3881083 D KEGG: lch:Lcho_0734 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 3880697..3881083 Alicycliphilus denitrificans BC 10105802 YP_004128329.1 CDS Alide_3727 NC_014910.1 3881080 3881889 D KEGG: dac:Daci_0737 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal-dependent phosphohydrolase 3881080..3881889 Alicycliphilus denitrificans BC 10105803 YP_004128330.1 CDS Alide_3728 NC_014910.1 3882027 3884105 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; pas sensor protein 3882027..3884105 Alicycliphilus denitrificans BC 10105804 YP_004128331.1 CDS Alide_3729 NC_014910.1 3884087 3885844 D KEGG: lch:Lcho_4371 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 3884087..3885844 Alicycliphilus denitrificans BC 10105805 YP_004128332.1 CDS Alide_3730 NC_014910.1 3886038 3887732 D KEGG: rfr:Rfer_1480 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 3886038..3887732 Alicycliphilus denitrificans BC 10105806 YP_004128333.1 CDS Alide_3731 NC_014910.1 3887749 3888711 R KEGG: dia:Dtpsy_2996 tyrosine recombinase XerC; TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; tyrosine recombinase xerc complement(3887749..3888711) Alicycliphilus denitrificans BC 10105807 YP_004128334.1 CDS Alide_3732 NC_014910.1 3888805 3889500 R PFAM: protein of unknown function DUF484; KEGG: dia:Dtpsy_2997 protein of unknown function DUF484; hypothetical protein complement(3888805..3889500) Alicycliphilus denitrificans BC 10105808 YP_004128335.1 CDS Alide_3733 NC_014910.1 3889497 3890375 R KEGG: dia:Dtpsy_2998 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; diaminopimelate epimerase complement(3889497..3890375) Alicycliphilus denitrificans BC 10105809 YP_004128336.1 CDS Alide_3734 NC_014910.1 3890451 3892145 D PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_3001 beta-lactamase domain protein; nudix hydrolase 3890451..3892145 Alicycliphilus denitrificans BC 10105810 YP_004128337.1 CDS Alide_3735 NC_014910.1 3892138 3892863 D KEGG: dia:Dtpsy_3002 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RNA-binding s4 domain-containing protein 3892138..3892863 Alicycliphilus denitrificans BC 10105811 YP_004128338.1 CDS Alide_3736 NC_014910.1 3893359 3893586 R KEGG: ajs:Ajs_3722 hypothetical protein; hypothetical protein complement(3893359..3893586) Alicycliphilus denitrificans BC 10105813 YP_004128339.1 CDS Alide_3737 NC_014910.1 3893696 3894616 D KEGG: dac:Daci_1442 cysteine synthase; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; cysteine synthase 3893696..3894616 Alicycliphilus denitrificans BC 10105814 YP_004128340.1 CDS Alide_3738 NC_014910.1 3894647 3895747 D PFAM: heat shock protein DnaJ domain protein; KEGG: bvi:Bcep1808_3882 heat shock protein DnaJ domain-containing protein; molecular chaperone DnaJ 3894647..3895747 Alicycliphilus denitrificans BC 10105815 YP_004128341.1 CDS Alide_3739 NC_014910.1 3895879 3897636 D PFAM: FAD dependent oxidoreductase; KEGG: dia:Dtpsy_3010 FAD dependent oxidoreductase; FAD-dependent oxidoreductase 3895879..3897636 Alicycliphilus denitrificans BC 10105816 YP_004128342.1 CDS Alide_3740 NC_014910.1 3897701 3898150 D PFAM: Carboxymuconolactone decarboxylase; KEGG: dac:Daci_0909 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 3897701..3898150 Alicycliphilus denitrificans BC 10105817 YP_004128343.1 CDS Alide_3741 NC_014910.1 3898189 3899091 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_3510 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3898189..3899091) Alicycliphilus denitrificans BC 10105818 YP_004128344.1 CDS Alide_3742 NC_014910.1 3899161 3900030 D KEGG: dac:Daci_3511 citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; citryl-CoA lyase 3899161..3900030 Alicycliphilus denitrificans BC 10105819 YP_004128345.1 CDS Alide_3743 NC_014910.1 3900058 3901035 D KEGG: dac:Daci_3512 hypothetical protein; hypothetical protein 3900058..3901035 Alicycliphilus denitrificans BC 10105820 YP_004128346.1 CDS Alide_3744 NC_014910.1 3901099 3902268 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_3513 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3901099..3902268 Alicycliphilus denitrificans BC 10105821 YP_004128347.1 CDS Alide_3745 NC_014910.1 3902265 3903107 D KEGG: dac:Daci_3514 amidohydrolase 2; manually curated; PFAM: amidohydrolase 2; amidohydrolase 3902265..3903107 Alicycliphilus denitrificans BC 10105822 YP_004128348.1 CDS Alide_3746 NC_014910.1 3903124 3904080 D KEGG: dac:Daci_3515 hypothetical protein; hypothetical protein 3903124..3904080 Alicycliphilus denitrificans BC 10105823 YP_004128349.1 CDS Alide_3747 NC_014910.1 3904135 3904641 R KEGG: cti:RALTA_B1490 transcriptional activator of cyclohexanecarboxylate anaerobic degradation; MarR type; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; regulatory protein marr complement(3904135..3904641) Alicycliphilus denitrificans BC 10105824 YP_004128350.1 CDS Alide_3748 NC_014910.1 3904772 3905539 D KEGG: lch:Lcho_1185 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase 3904772..3905539 Alicycliphilus denitrificans BC 10105825 YP_004128351.1 CDS Alide_3749 NC_014910.1 3905583 3906365 D KEGG: vei:Veis_4105 enoyl-CoA hydratase/isomerase; TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; PFAM: Enoyl-CoA hydratase/isomerase; 2-ketocyclohexanecarboxyl-CoA hydrolase 3905583..3906365 Alicycliphilus denitrificans BC 10105826 YP_004128352.1 CDS Alide_3750 NC_014910.1 3906385 3907542 D KEGG: lch:Lcho_1187 cyclohexanecarboxyl-CoA dehydrogenase; TIGRFAM: cyclohexanecarboxyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein; cyclohexanecarboxyl-CoA dehydrogenase 3906385..3907542 Alicycliphilus denitrificans BC 10105827 YP_004128353.1 CDS Alide_3751 NC_014910.1 3907578 3909233 D KEGG: pna:Pnap_2126 cyclohexanecarboxylate-CoA ligase; TIGRFAM: cyclohexanecarboxylate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; cyclohexanecarboxylate-CoA ligase 3907578..3909233 Alicycliphilus denitrificans BC 10105828 YP_004128354.1 CDS Alide_3752 NC_014910.1 3909334 3910266 R PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha complement(3909334..3910266) Alicycliphilus denitrificans BC 10105829 YP_004128355.1 CDS Alide_3753 NC_014910.1 3910284 3911033 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunits alpha/beta complement(3910284..3911033) Alicycliphilus denitrificans BC 10105830 YP_004128356.1 CDS Alide_3754 NC_014910.1 3911058 3912032 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_3732 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(3911058..3912032) Alicycliphilus denitrificans BC 10105831 YP_004128357.1 CDS Alide_3755 NC_014910.1 3912040 3913035 R KEGG: dac:Daci_1400 hypothetical protein; hypothetical protein complement(3912040..3913035) Alicycliphilus denitrificans BC 10105832 YP_004128358.1 CDS Alide_3756 NC_014910.1 3913108 3914340 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_3734 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f complement(3913108..3914340) Alicycliphilus denitrificans BC 10105833 YP_004128359.1 CDS Alide_3757 NC_014910.1 3914365 3914787 R PFAM: thioesterase superfamily protein; KEGG: mrb:Mrub_0164 thioesterase superfamily protein; thioesterase superfamily protein complement(3914365..3914787) Alicycliphilus denitrificans BC 10105834 YP_004128360.1 CDS Alide_3758 NC_014910.1 3914824 3915630 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_3016 enoyl-CoA hydratase; enoyl-CoA hydratase complement(3914824..3915630) Alicycliphilus denitrificans BC 10105835 YP_004128361.1 CDS Alide_3759 NC_014910.1 3915748 3916878 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_1396 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase complement(3915748..3916878) Alicycliphilus denitrificans BC 10105836 YP_004128362.1 CDS Alide_3760 NC_014910.1 3916889 3918085 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_3737 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase complement(3916889..3918085) Alicycliphilus denitrificans BC 10105837 YP_004128363.1 CDS Alide_3761 NC_014910.1 3918098 3919297 R TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_3019 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase complement(3918098..3919297) Alicycliphilus denitrificans BC 10105838 YP_004128364.1 CDS Alide_3762 NC_014910.1 3919443 3921560 R PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_1393 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase complement(3919443..3921560) Alicycliphilus denitrificans BC 10105839 YP_004128365.1 CDS Alide_3763 NC_014910.1 3921671 3922579 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_1392 LysR family transcriptional regulator; LysR family transcriptional regulator 3921671..3922579 Alicycliphilus denitrificans BC 10105840 YP_004128366.1 CDS Alide_3764 NC_014910.1 3922617 3922931 D KEGG: bpe:BP0072 transposase; transposase 3922617..3922931 Alicycliphilus denitrificans BC 10105841 YP_004128367.1 CDS Alide_3768 NC_014910.1 3924165 3924488 D PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 3924165..3924488 Alicycliphilus denitrificans BC 10105844 YP_004128368.1 CDS Alide_3769 NC_014910.1 3924485 3925399 D PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 3924485..3925399 Alicycliphilus denitrificans BC 10105845 YP_004128369.1 CDS Alide_3770 NC_014910.1 3925534 3926346 R PFAM: Integrase catalytic region; KEGG: ajs:Ajs_3784 integrase catalytic subunit; integrase catalytic region protein complement(3925534..3926346) Alicycliphilus denitrificans BC 10105846 YP_004128370.1 CDS Alide_3771 NC_014910.1 3926364 3926630 R PFAM: transposase IS3/IS911 family protein; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911; transposase is3/is911 family protein complement(3926364..3926630) Alicycliphilus denitrificans BC 10105847 YP_004128371.1 CDS Alide_3772 NC_014910.1 3926725 3926997 D KEGG: vap:Vapar_6180 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3926725..3926997 Alicycliphilus denitrificans BC 10105848 YP_004128372.1 CDS Alide_3774 NC_014910.1 3927302 3928816 R KEGG: dia:Dtpsy_2523 transposase IS66; transposase is66 complement(3927302..3928816) Alicycliphilus denitrificans BC 10105850 YP_004128373.1 CDS Alide_3775 NC_014910.1 3928899 3929231 R PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; is66 orf2 family protein complement(3928899..3929231) Alicycliphilus denitrificans BC 10105851 YP_004128374.1 CDS Alide_3776 NC_014910.1 3929228 3929656 R PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase is3/is911 family protein complement(3929228..3929656) Alicycliphilus denitrificans BC 10105852 YP_004128375.1 CDS Alide_3777 NC_014910.1 3930055 3930927 R PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_3742 heat shock protein HtpX; peptidase m48 ste24p complement(3930055..3930927) Alicycliphilus denitrificans BC 10105853 YP_004128376.1 CDS Alide_3778 NC_014910.1 3931054 3931845 R KEGG: ajs:Ajs_3743 transmembrane protein; transmembrane protein complement(3931054..3931845) Alicycliphilus denitrificans BC 10105854 YP_004128377.1 CDS Alide_3779 NC_014910.1 3931827 3932876 R TIGRFAM: dihydroorotase, homodimeric type; KEGG: dia:Dtpsy_3026 dihydroorotase; PFAM: amidohydrolase; dihydroorotase, homodimeric type complement(3931827..3932876) Alicycliphilus denitrificans BC 10105855 YP_004128378.1 CDS Alide_3781 NC_014910.1 3933633 3934022 D PFAM: protein of unknown function DUF488; KEGG: rfr:Rfer_4130 hypothetical protein; hypothetical protein 3933633..3934022 Alicycliphilus denitrificans BC 10105857 YP_004128379.1 CDS Alide_3782 NC_014910.1 3934057 3934515 D KEGG: ote:Oter_3729 alkylhydroperoxidase; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 3934057..3934515 Alicycliphilus denitrificans BC 10105858 YP_004128380.1 CDS Alide_3783 NC_014910.1 3934536 3940370 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: ajs:Ajs_3747 UvrA family protein; SMART: AAA ATPase; excinuclease ABC subunit A complement(3934536..3940370) Alicycliphilus denitrificans BC 10105859 YP_004128381.1 CDS Alide_3784 NC_014910.1 3940504 3941616 D PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3029 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 3940504..3941616 Alicycliphilus denitrificans BC 10105860 YP_004128382.1 CDS Alide_3785 NC_014910.1 3941687 3941854 R KEGG: ajs:Ajs_3750 hypothetical protein; hypothetical protein complement(3941687..3941854) Alicycliphilus denitrificans BC 10105861 YP_004128383.1 CDS Alide_3786 NC_014910.1 3942000 3943019 R KEGG: ajs:Ajs_3751 porin; porin complement(3942000..3943019) Alicycliphilus denitrificans BC 10105862 YP_004128384.1 CDS Alide_3787 NC_014910.1 3943222 3944916 R KEGG: ajs:Ajs_3752 major facilitator superfamily transporter; major facilitator superfamily transporter complement(3943222..3944916) Alicycliphilus denitrificans BC 10105863 YP_004128385.1 CDS Alide_3788 NC_014910.1 3945233 3945541 D PFAM: protein of unknown function DUF485; KEGG: dac:Daci_5956 hypothetical protein; hypothetical protein 3945233..3945541 Alicycliphilus denitrificans BC 10105864 YP_004128386.1 CDS Alide_3789 NC_014910.1 3945538 3947274 D KEGG: rpf:Rpic12D_0449 SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; sss sodium solute transporter superfamily 3945538..3947274 Alicycliphilus denitrificans BC 10105865 YP_004128387.1 CDS Alide_3790 NC_014910.1 3947398 3948063 R KEGG: pna:Pnap_0481 DNA polymerase III subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; exonuclease rnase t and DNA polymerase iii complement(3947398..3948063) Alicycliphilus denitrificans BC 10105866 YP_004128388.1 CDS Alide_3791 NC_014910.1 3948060 3949874 R KEGG: dac:Daci_5960 CBS domain-containing protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein; hypothetical protein complement(3948060..3949874) Alicycliphilus denitrificans BC 10105867 YP_004128389.1 CDS Alide_3792 NC_014910.1 3949897 3950538 R PFAM: DSBA oxidoreductase; KEGG: dac:Daci_5961 DsbA oxidoreductase; dsba oxidoreductase complement(3949897..3950538) Alicycliphilus denitrificans BC 10105868 YP_004128390.1 CDS Alide_3793 NC_014910.1 3950535 3950795 R PFAM: protein of unknown function DUF1289; KEGG: dia:Dtpsy_3035 protein of unknown function DUF1289; hypothetical protein complement(3950535..3950795) Alicycliphilus denitrificans BC 10105869 YP_004128391.1 CDS Alide_3794 NC_014910.1 3950792 3951286 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vap:Vapar_4709 YbaK/prolyl-tRNA synthetase associated region; prolyl-tRNA synthetase complement(3950792..3951286) Alicycliphilus denitrificans BC 10105870 YP_004128392.1 CDS Alide_3795 NC_014910.1 3951292 3952206 R PFAM: pyruvate carboxyltransferase; KEGG: ajs:Ajs_3757 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase complement(3951292..3952206) Alicycliphilus denitrificans BC 10105871 YP_004128393.1 CDS Alide_3796 NC_014910.1 3952492 3953412 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dia:Dtpsy_3039 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein complement(3952492..3953412) Alicycliphilus denitrificans BC 10105872 YP_004128394.1 CDS Alide_3797 NC_014910.1 3953450 3955471 R PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: ajs:Ajs_3759 3-methylcrotonoyl-CoA carboxylase, alpha subunit; carbamoyl-phosphate synthase l chain ATP-binding protein complement(3953450..3955471) Alicycliphilus denitrificans BC 10105873 YP_004128395.1 CDS Alide_3798 NC_014910.1 3955472 3956191 R KEGG: dia:Dtpsy_3041 transmembrane protein; transmembrane protein complement(3955472..3956191) Alicycliphilus denitrificans BC 10105874 YP_004128396.1 CDS Alide_3799 NC_014910.1 3956213 3956992 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3761 enoyl-CoA hydratase; enoyl-CoA hydratase complement(3956213..3956992) Alicycliphilus denitrificans BC 10105875 YP_004128397.1 CDS Alide_3800 NC_014910.1 3957003 3958607 R KEGG: dia:Dtpsy_3044 propionyl-CoA carboxylase; PFAM: carboxyl transferase; methylcrotonoyl-CoA carboxylase complement(3957003..3958607) Alicycliphilus denitrificans BC 10105876 YP_004128398.1 CDS Alide_3801 NC_014910.1 3958604 3960325 R PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_3045 AMP-binding domain protein; AMP-dependent synthetase/ligase complement(3958604..3960325) Alicycliphilus denitrificans BC 10105877 YP_004128399.1 CDS Alide_3802 NC_014910.1 3960471 3961529 D KEGG: dia:Dtpsy_3046 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 3960471..3961529 Alicycliphilus denitrificans BC 10105878 YP_004128400.1 CDS Alide_3803 NC_014910.1 3961589 3962254 D PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_3767 glutathione S-transferase domain-containing protein; glutathione s-transferase domain-containing protein 3961589..3962254 Alicycliphilus denitrificans BC 10105879 YP_004128401.1 CDS Alide_3804 NC_014910.1 3962342 3963955 D KEGG: vei:Veis_0287 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; choline dehydrogenase 3962342..3963955 Alicycliphilus denitrificans BC 10105880 YP_004128402.1 CDS Alide_3805 NC_014910.1 3964101 3965300 D PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_0291 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 3964101..3965300 Alicycliphilus denitrificans BC 10105881 YP_004128403.1 CDS Alide_3806 NC_014910.1 3965429 3966349 D PFAM: inner-membrane translocator; KEGG: vei:Veis_0290 inner-membrane translocator; inner-membrane translocator 3965429..3966349 Alicycliphilus denitrificans BC 10105882 YP_004128404.1 CDS Alide_3807 NC_014910.1 3966346 3968160 D KEGG: vei:Veis_0289 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; ABC transporter 3966346..3968160 Alicycliphilus denitrificans BC 10105883 YP_004128405.1 CDS Alide_3808 NC_014910.1 3968150 3968872 D KEGG: vei:Veis_0288 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3968150..3968872 Alicycliphilus denitrificans BC 10105884 YP_004128406.1 CDS Alide_3809 NC_014910.1 3969040 3970650 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: vei:Veis_0287 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 3969040..3970650 Alicycliphilus denitrificans BC 10105885 YP_004128407.1 CDS Alide_3810 NC_014910.1 3970661 3972319 D PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3769 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 3970661..3972319 Alicycliphilus denitrificans BC 10105886 YP_004128408.1 CDS Alide_3811 NC_014910.1 3972349 3973737 R KEGG: ctt:CtCNB1_3118 transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; aminotransferase class i and ii complement(3972349..3973737) Alicycliphilus denitrificans BC 10105887 YP_004128409.1 CDS Alide_3812 NC_014910.1 3973802 3975094 D KEGG: dac:Daci_0287 hydroxymethylglutaryl-CoA reductase, degradative; TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; hydroxymethylglutaryl-CoA reductase, degradative 3973802..3975094 Alicycliphilus denitrificans BC 10105888 YP_004128410.1 CDS Alide_3813 NC_014910.1 3975154 3975816 R KEGG: dia:Dtpsy_3047 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase complement(3975154..3975816) Alicycliphilus denitrificans BC 10105889 YP_004128411.1 CDS Alide_3814 NC_014910.1 3975813 3977852 R TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: dia:Dtpsy_3048 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; diguanylate cyclase complement(3975813..3977852) Alicycliphilus denitrificans BC 10105890 YP_004128412.1 CDS Alide_3815 NC_014910.1 3977958 3979469 D PFAM: extracellular solute-binding protein family 5; KEGG: dia:Dtpsy_3049 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein 3977958..3979469 Alicycliphilus denitrificans BC 10105891 YP_004128413.1 CDS Alide_3816 NC_014910.1 3979717 3980508 D KEGG: rfr:Rfer_2484 hypothetical protein; hypothetical protein 3979717..3980508 Alicycliphilus denitrificans BC 10105892 YP_004128414.1 CDS Alide_3817 NC_014910.1 3980511 3983471 R TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: rfr:Rfer_2485 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase complement(3980511..3983471) Alicycliphilus denitrificans BC 10105893 YP_004128415.1 CDS Alide_3818 NC_014910.1 3983604 3983999 R KEGG: dac:Daci_5982 hypothetical protein; hypothetical protein complement(3983604..3983999) Alicycliphilus denitrificans BC 10105894 YP_004128416.1 CDS Alide_3819 NC_014910.1 3983996 3984697 R KEGG: pna:Pnap_0218 hypothetical protein; hypothetical protein complement(3983996..3984697) Alicycliphilus denitrificans BC 10105895 YP_004128417.1 CDS Alide_3820 NC_014910.1 3984791 3985285 D PFAM: protein of unknown function DUF421; KEGG: aav:Aave_4363 hypothetical protein; hypothetical protein 3984791..3985285 Alicycliphilus denitrificans BC 10105896 YP_004128418.1 CDS Alide_3821 NC_014910.1 3985566 3986381 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reh:H16_A2299 IclR family transcriptional regulator; regulatory protein iclr 3985566..3986381 Alicycliphilus denitrificans BC 10105897 YP_004128419.1 CDS Alide_3822 NC_014910.1 3986378 3987082 D KEGG: aav:Aave_4364 peptidase E; PFAM: peptidase S51 dipeptidase E; dipeptidase e 3986378..3987082 Alicycliphilus denitrificans BC 10105898 YP_004128420.1 CDS Alide_3823 NC_014910.1 3987113 3988015 D PFAM: protein of unknown function DUF1177; KEGG: reh:H16_A2301 hypothetical protein; hypothetical protein 3987113..3988015 Alicycliphilus denitrificans BC 10105899 YP_004128421.1 CDS Alide_3824 NC_014910.1 3988012 3988689 D PFAM: AroM family protein; KEGG: cti:RALTA_A1846 hypothetical protein; arom family protein 3988012..3988689 Alicycliphilus denitrificans BC 10105900 YP_004128422.1 CDS Alide_3825 NC_014910.1 3988724 3989704 D KEGG: cti:RALTA_A1847 conserved hypothetical protein, UPF0065; hypothetical protein 3988724..3989704 Alicycliphilus denitrificans BC 10105901 YP_004128423.1 CDS Alide_3828 NC_014910.1 3991034 3992164 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_3774 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase complement(3991034..3992164) Alicycliphilus denitrificans BC 10105904 YP_004128424.1 CDS Alide_3829 NC_014910.1 3992188 3992856 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3053 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr complement(3992188..3992856) Alicycliphilus denitrificans BC 10105905 YP_004128425.1 CDS Alide_3830 NC_014910.1 3992926 3994116 R TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ctt:CtCNB1_0487 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase complement(3992926..3994116) Alicycliphilus denitrificans BC 10105906 YP_004128426.1 CDS Alide_3831 NC_014910.1 3994113 3995939 R KEGG: ajs:Ajs_3777 bifunctional isocitrate dehydrogenase kinase/phosphatase protein; PFAM: Isocitrate dehydrogenase kinasephosphatase; (isocitrate dehydrogenase (nadp(+))) kinase complement(3994113..3995939) Alicycliphilus denitrificans BC 10105907 YP_004128427.1 CDS Alide_3832 NC_014910.1 3995992 3996657 R KEGG: dia:Dtpsy_3056 carbonate dehydratase; PFAM: carbonic anhydrase; carbonate dehydratase complement(3995992..3996657) Alicycliphilus denitrificans BC 10105908 YP_004128428.1 CDS Alide_3833 NC_014910.1 3996711 3997901 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_3779 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(3996711..3997901) Alicycliphilus denitrificans BC 10105909 YP_004128429.1 CDS Alide_3834 NC_014910.1 3998041 3998448 R KEGG: dia:Dtpsy_3058 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator complement(3998041..3998448) Alicycliphilus denitrificans BC 10105910 YP_004128430.1 CDS Alide_3835 NC_014910.1 4004359 4006245 D KEGG: ajs:Ajs_3785 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4004359..4006245 Alicycliphilus denitrificans BC 10105916 YP_004128431.1 CDS Alide_3836 NC_014910.1 4006249 4007358 R PFAM: CheB methylesterase; response regulator receiver; KEGG: dia:Dtpsy_3060 response regulator receiver modulated CheB methylesterase; SMART: response regulator receiver; protein-glutamate methylesterase complement(4006249..4007358) Alicycliphilus denitrificans BC 10105917 YP_004128432.1 CDS Alide_3837 NC_014910.1 4007405 4008142 R PFAM: CheD family protein; KEGG: ajs:Ajs_3787 chemoreceptor glutamine deamidase CheD; chemotaxis protein CheD complement(4007405..4008142) Alicycliphilus denitrificans BC 10105918 YP_004128433.1 CDS Alide_3838 NC_014910.1 4008159 4009073 R PFAM: MCP methyltransferase CheR-type; KEGG: dia:Dtpsy_3062 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type; protein-glutamate o-methyltransferase complement(4008159..4009073) Alicycliphilus denitrificans BC 10105919 YP_004128434.1 CDS Alide_3839 NC_014910.1 4009073 4009555 R KEGG: dia:Dtpsy_3063 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; chemotaxis protein CheW complement(4009073..4009555) Alicycliphilus denitrificans BC 10105920 YP_004128435.1 CDS Alide_3840 NC_014910.1 4009590 4011695 R KEGG: ajs:Ajs_3790 CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; chemotaxis protein CheW complement(4009590..4011695) Alicycliphilus denitrificans BC 10105921 YP_004128436.1 CDS Alide_3841 NC_014910.1 4011752 4012114 R KEGG: dia:Dtpsy_3065 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver complement(4011752..4012114) Alicycliphilus denitrificans BC 10105922 YP_004128437.1 CDS Alide_3842 NC_014910.1 4012174 4012620 R KEGG: dia:Dtpsy_3066 hypothetical protein; hypothetical protein complement(4012174..4012620) Alicycliphilus denitrificans BC 10105923 YP_004128438.1 CDS Alide_3843 NC_014910.1 4012694 4013815 D KEGG: ajs:Ajs_3793 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; ATP-binding domain-containing protein 4012694..4013815 Alicycliphilus denitrificans BC 10105924 YP_004128439.1 CDS Alide_3844 NC_014910.1 4013812 4014441 D KEGG: dia:Dtpsy_3068 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver 4013812..4014441 Alicycliphilus denitrificans BC 10105925 YP_004128440.1 CDS Alide_3845 NC_014910.1 4014526 4015290 R KEGG: ajs:Ajs_3795 flagellar biosynthetic protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; flagellar biosynthetic protein flir complement(4014526..4015290) Alicycliphilus denitrificans BC 10105926 YP_004128441.1 CDS Alide_3846 NC_014910.1 4015287 4015556 R KEGG: ajs:Ajs_3796 flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; flagellar biosynthetic protein fliq complement(4015287..4015556) Alicycliphilus denitrificans BC 10105927 YP_004128442.1 CDS Alide_3847 NC_014910.1 4015567 4016322 R KEGG: ajs:Ajs_3797 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein flip complement(4015567..4016322) Alicycliphilus denitrificans BC 10105928 YP_004128443.1 CDS Alide_3848 NC_014910.1 4016315 4016680 R KEGG: ajs:Ajs_3798 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, flio complement(4016315..4016680) Alicycliphilus denitrificans BC 10105929 YP_004128444.1 CDS Alide_3849 NC_014910.1 4016664 4017119 R KEGG: dia:Dtpsy_3073 flagellar motor switch protein FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein flin complement(4016664..4017119) Alicycliphilus denitrificans BC 10105930 YP_004128445.1 CDS Alide_3850 NC_014910.1 4017109 4018113 R KEGG: dia:Dtpsy_3074 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; flagellar motor switch protein flim complement(4017109..4018113) Alicycliphilus denitrificans BC 10105931 YP_004128446.1 CDS Alide_3851 NC_014910.1 4018120 4018695 R PFAM: flagellar basal body-associated protein FliL; KEGG: dia:Dtpsy_3075 flagellar basal body-associated protein FliL; flagellar basal body protein FliL complement(4018120..4018695) Alicycliphilus denitrificans BC 10105932 YP_004128447.1 CDS Alide_3852 NC_014910.1 4018861 4020228 R PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: ajs:Ajs_3802 flagellar hook-length control protein; hypothetical protein complement(4018861..4020228) Alicycliphilus denitrificans BC 10105933 YP_004128448.1 CDS Alide_3853 NC_014910.1 4020231 4020695 R KEGG: dia:Dtpsy_3077 flagellar export protein FliJ; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar export FliJ family protein; flagellar export protein flij complement(4020231..4020695) Alicycliphilus denitrificans BC 10105934 YP_004128449.1 CDS Alide_3854 NC_014910.1 4020747 4022150 R TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: dia:Dtpsy_3078 ATPase FliI/YscN; SMART: AAA ATPase; flagellar protein export atpase flii complement(4020747..4022150) Alicycliphilus denitrificans BC 10105935 YP_004128450.1 CDS Alide_3855 NC_014910.1 4022140 4022865 R PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: dia:Dtpsy_3079 flagellar assembly protein FliH; flagellar assembly protein FliH complement(4022140..4022865) Alicycliphilus denitrificans BC 10105936 YP_004128451.1 CDS Alide_3856 NC_014910.1 4022887 4023882 R KEGG: dia:Dtpsy_3080 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; flagellar motor switch protein flig complement(4022887..4023882) Alicycliphilus denitrificans BC 10105937 YP_004128452.1 CDS Alide_3857 NC_014910.1 4023913 4025607 R KEGG: dia:Dtpsy_3081 flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; flagellar m-ring protein flif complement(4023913..4025607) Alicycliphilus denitrificans BC 10105938 YP_004128453.1 CDS Alide_3858 NC_014910.1 4025783 4026094 D KEGG: dia:Dtpsy_3082 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit flie 4025783..4026094 Alicycliphilus denitrificans BC 10105939 YP_004128454.1 CDS Alide_3859 NC_014910.1 4026310 4026609 R KEGG: dia:Dtpsy_3083 flagellar protein FliT; flagellar protein flit complement(4026310..4026609) Alicycliphilus denitrificans BC 10105940 YP_004128455.1 CDS Alide_3860 NC_014910.1 4026613 4027053 R KEGG: dia:Dtpsy_3084 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; flagellar protein flis complement(4026613..4027053) Alicycliphilus denitrificans BC 10105941 YP_004128456.1 CDS Alide_3861 NC_014910.1 4027120 4028565 R PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; flagellin hook IN repeat protein; KEGG: aav:Aave_4399 flagellar hook-associated 2 domain-containing protein; flagellar hook-associated 2 domain-containing protein complement(4027120..4028565) Alicycliphilus denitrificans BC 10105942 YP_004128457.1 CDS Alide_3862 NC_014910.1 4028798 4030258 R PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: aav:Aave_4400 flagellin domain-containing protein; flagellin domain-containing protein complement(4028798..4030258) Alicycliphilus denitrificans BC 10105943 YP_004128458.1 CDS Alide_3863 NC_014910.1 4030593 4032062 D PFAM: flagellin domain protein; KEGG: aav:Aave_4401 flagellin domain-containing protein; flagellin domain-containing protein 4030593..4032062 Alicycliphilus denitrificans BC 10105944 YP_004128459.1 CDS Alide_3864 NC_014910.1 4032224 4037233 R KEGG: psa:PST_1402 hypothetical protein; manually curated; PFAM: glycosyl transferase family 2; Capsule polysaccharide biosynthesis protein; family 2 glycosyl transferase complement(4032224..4037233) Alicycliphilus denitrificans BC 10105945 YP_004128460.1 CDS Alide_3865 NC_014910.1 4037233 4038522 R PFAM: Dimethylmenaquinone methyltransferase; acylneuraminate cytidylyltransferase; KEGG: syd:Syncc9605_2247 demethylmenaquinone methyltransferase-like; dimethylmenaquinone methyltransferase complement(4037233..4038522) Alicycliphilus denitrificans BC 10105946 YP_004128461.1 CDS Alide_3866 NC_014910.1 4039117 4039977 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_3088 MotA/TolQ/ExbB proton channel; mota/tolq/exbb proton channel 4039117..4039977 Alicycliphilus denitrificans BC 10105947 YP_004128462.1 CDS Alide_3867 NC_014910.1 4039996 4040934 D PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_3089 OmpA/MotB domain protein; ompa/motb domain-containing protein 4039996..4040934 Alicycliphilus denitrificans BC 10105948 YP_004128463.1 CDS Alide_3868 NC_014910.1 4041000 4041386 D KEGG: dia:Dtpsy_3090 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 4041000..4041386 Alicycliphilus denitrificans BC 10105949 YP_004128464.1 CDS Alide_3869 NC_014910.1 4041389 4042021 D PFAM: Chemotaxis phosphatase CheZ; KEGG: ajs:Ajs_3818 chemotaxis phosphatase, CheZ; chemotaxis protein CheZ 4041389..4042021 Alicycliphilus denitrificans BC 10105950 YP_004128465.1 CDS Alide_3870 NC_014910.1 4042118 4043278 D PFAM: type III secretion exporter; KEGG: dia:Dtpsy_3092 type III secretion exporter; type III secretion exporter 4042118..4043278 Alicycliphilus denitrificans BC 10105951 YP_004128466.1 CDS Alide_3871 NC_014910.1 4043275 4045365 D KEGG: dia:Dtpsy_3093 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; flagellar biosynthesis protein FlhA 4043275..4045365 Alicycliphilus denitrificans BC 10105952 YP_004128467.1 CDS Alide_3872 NC_014910.1 4045362 4046924 D TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: ajs:Ajs_3821 GTP-binding signal recognition particle; SMART: AAA ATPase; flagellar biosynthetic protein flhf 4045362..4046924 Alicycliphilus denitrificans BC 10105953 YP_004128468.1 CDS Alide_3873 NC_014910.1 4046914 4047717 D KEGG: ajs:Ajs_3822 hypothetical protein; hypothetical protein 4046914..4047717 Alicycliphilus denitrificans BC 10105954 YP_004128469.1 CDS Alide_3874 NC_014910.1 4047723 4048439 D KEGG: dia:Dtpsy_3096 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; RNA polymerase sigma factor, flia/whig family 4047723..4048439 Alicycliphilus denitrificans BC 10105955 YP_004128470.1 CDS Alide_3875 NC_014910.1 4048569 4048907 R KEGG: ajs:Ajs_3824 hypothetical protein; hypothetical protein complement(4048569..4048907) Alicycliphilus denitrificans BC 10105956 YP_004128471.1 CDS Alide_3876 NC_014910.1 4048943 4049266 R KEGG: dia:Dtpsy_3098 anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein; anti-sigma-28 factor flgm family protein complement(4048943..4049266) Alicycliphilus denitrificans BC 10105957 YP_004128472.1 CDS Alide_3877 NC_014910.1 4049360 4050106 R KEGG: dia:Dtpsy_3099 flagella basal body P-ring formation protein FlgA; TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; flagellar basal body P-ring biosynthesis protein FlgA complement(4049360..4050106) Alicycliphilus denitrificans BC 10105958 YP_004128473.1 CDS Alide_3878 NC_014910.1 4050289 4050705 D KEGG: ajs:Ajs_3827 flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; flagellar basal-body rod protein FlgB 4050289..4050705 Alicycliphilus denitrificans BC 10105959 YP_004128474.1 CDS Alide_3879 NC_014910.1 4050717 4051121 D KEGG: dia:Dtpsy_3101 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal body rod protein FlgC 4050717..4051121 Alicycliphilus denitrificans BC 10105960 YP_004128475.1 CDS Alide_3880 NC_014910.1 4051137 4051799 D PFAM: flagellar hook capping protein; KEGG: dia:Dtpsy_3102 flagellar hook capping protein; flagellar hook capping protein 4051137..4051799 Alicycliphilus denitrificans BC 10105961 YP_004128476.1 CDS Alide_3881 NC_014910.1 4051836 4053116 D KEGG: aav:Aave_4423 hypothetical protein; TIGRFAM: flagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar hook-basal body protein 4051836..4053116 Alicycliphilus denitrificans BC 10105962 YP_004128477.1 CDS Alide_3882 NC_014910.1 4053142 4053882 D KEGG: dia:Dtpsy_3104 flagellar basal-body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; flagellar hook-basal body protein; PFAM: flagellar basal body rod protein; flagellar basal body rod protein FlgF 4053142..4053882 Alicycliphilus denitrificans BC 10105963 YP_004128478.1 CDS Alide_3883 NC_014910.1 4053907 4054689 D KEGG: dia:Dtpsy_3105 flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgG 4053907..4054689 Alicycliphilus denitrificans BC 10105964 YP_004128479.1 CDS Alide_3884 NC_014910.1 4054704 4055387 D PFAM: flagellar L-ring protein; KEGG: aav:Aave_4426 flagellar L-ring protein; flagellar l-ring protein 4054704..4055387 Alicycliphilus denitrificans BC 10105965 YP_004128480.1 CDS Alide_3885 NC_014910.1 4055582 4056727 D PFAM: flagellar P-ring protein; KEGG: aav:Aave_4428 flagellar basal body P-ring protein; flagellar p-ring protein 4055582..4056727 Alicycliphilus denitrificans BC 10105966 YP_004128481.1 CDS Alide_3886 NC_014910.1 4056727 4057665 D TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ-like; KEGG: ajs:Ajs_3836 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase flgj 4056727..4057665 Alicycliphilus denitrificans BC 10105967 YP_004128482.1 CDS Alide_3887 NC_014910.1 4057677 4059659 D KEGG: dia:Dtpsy_3110 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar hook-associated protein flgk 4057677..4059659 Alicycliphilus denitrificans BC 10105968 YP_004128483.1 CDS Alide_3888 NC_014910.1 4059661 4060911 D KEGG: aav:Aave_4431 flagellar hook-associated protein 3; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; flagellar hook-associated protein 3 4059661..4060911 Alicycliphilus denitrificans BC 10105969 YP_004128484.1 CDS Alide_3889 NC_014910.1 4060988 4062202 D PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_3839 signal transduction protein; metal-dependent hydrolase hdod 4060988..4062202 Alicycliphilus denitrificans BC 10105970 YP_004128485.1 CDS Alide_3890 NC_014910.1 4062348 4063343 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_3841 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 4062348..4063343 Alicycliphilus denitrificans BC 10105971 YP_004128486.1 CDS Alide_3891 NC_014910.1 4063388 4064827 R KEGG: dia:Dtpsy_3115 transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(4063388..4064827) Alicycliphilus denitrificans BC 10105972 YP_004128487.1 CDS Alide_3892 NC_014910.1 4064947 4065546 D KEGG: ajs:Ajs_3843 hypothetical protein; hypothetical protein 4064947..4065546 Alicycliphilus denitrificans BC 10105973 YP_004128488.1 CDS Alide_3893 NC_014910.1 4065543 4066475 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: vap:Vapar_0746 protein of unknown function DUF6 transmembrane; hypothetical protein 4065543..4066475 Alicycliphilus denitrificans BC 10105974 YP_004128489.1 CDS Alide_3894 NC_014910.1 4066591 4067772 D PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3845 GntR family transcriptional regulator; aminotransferase class i and ii 4066591..4067772 Alicycliphilus denitrificans BC 10105975 YP_004128490.1 CDS Alide_3895 NC_014910.1 4067787 4068662 D KEGG: dia:Dtpsy_3119 phenazine biosynthesis protein PhzF family; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; phenazine biosynthesis protein phzf family 4067787..4068662 Alicycliphilus denitrificans BC 10105976 YP_004128491.1 CDS Alide_3896 NC_014910.1 4068659 4069633 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dia:Dtpsy_3120 hypothetical protein; pyridoxal-5'-phosphate-dependent protein subunit beta 4068659..4069633 Alicycliphilus denitrificans BC 10105977 YP_004128492.1 CDS Alide_3897 NC_014910.1 4069830 4070918 D KEGG: dia:Dtpsy_3121 hypothetical protein; hypothetical protein 4069830..4070918 Alicycliphilus denitrificans BC 10105978 YP_004128493.1 CDS Alide_3898 NC_014910.1 4070944 4072185 D PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3122 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 4070944..4072185 Alicycliphilus denitrificans BC 10105979 YP_004128494.1 CDS Alide_3899 NC_014910.1 4072182 4073309 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3123 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 4072182..4073309 Alicycliphilus denitrificans BC 10105980 YP_004128495.1 CDS Alide_3900 NC_014910.1 4073339 4074052 D PFAM: Phosphoglycerate mutase; KEGG: dia:Dtpsy_3124 phosphoglycerate mutase; phosphoglycerate mutase 4073339..4074052 Alicycliphilus denitrificans BC 10105981 YP_004128496.1 CDS Alide_3901 NC_014910.1 4074043 4075233 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pmy:Pmen_1813 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase complement(4074043..4075233) Alicycliphilus denitrificans BC 10105982 YP_004128497.1 CDS Alide_3902 NC_014910.1 4075309 4075812 R PFAM: nuclear export factor GLE1; KEGG: vap:Vapar_4773 protein of unknown function DUF461; nuclear export factor gle1 complement(4075309..4075812) Alicycliphilus denitrificans BC 10105983 YP_004128498.1 CDS Alide_3903 NC_014910.1 4075836 4078154 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ctt:CtCNB1_0607 TonB-dependent receptor; tonb-dependent receptor complement(4075836..4078154) Alicycliphilus denitrificans BC 10105984 YP_004128499.1 CDS Alide_3904 NC_014910.1 4078315 4078662 R KEGG: vap:Vapar_2119 hypothetical protein; hypothetical protein complement(4078315..4078662) Alicycliphilus denitrificans BC 10105985 YP_004128500.1 CDS Alide_3905 NC_014910.1 4078758 4079615 R PFAM: Creatininase; KEGG: dia:Dtpsy_3125 creatininase; creatininase complement(4078758..4079615) Alicycliphilus denitrificans BC 10105986 YP_004128501.1 CDS Alide_3906 NC_014910.1 4079632 4080612 R PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: dac:Daci_0588 hypothetical protein; ABC transporter substrate-binding protein complement(4079632..4080612) Alicycliphilus denitrificans BC 10105987 YP_004128502.1 CDS Alide_3907 NC_014910.1 4080893 4082995 D KEGG: dia:Dtpsy_3127 cytochrome c biogenesis protein transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; protein-disulfide reductase 4080893..4082995 Alicycliphilus denitrificans BC 10105988 YP_004128503.1 CDS Alide_3908 NC_014910.1 4083095 4083628 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: vap:Vapar_0729 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 4083095..4083628 Alicycliphilus denitrificans BC 10105989 YP_004128504.1 CDS Alide_3909 NC_014910.1 4083665 4084411 R PFAM: protein of unknown function DUF81; KEGG: har:HEAR3236 hypothetical protein; hypothetical protein complement(4083665..4084411) Alicycliphilus denitrificans BC 10105990 YP_004128505.1 CDS Alide_3910 NC_014910.1 4084675 4085703 D PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: bpt:Bpet1138 peptidoglycan binding-like domain-containing protein; peptidoglycan-binding domain-containing protein 4084675..4085703 Alicycliphilus denitrificans BC 10105991 YP_004128506.1 CDS Alide_3911 NC_014910.1 4085746 4086864 D TIGRFAM: uroporphyrinogen decarboxylase; KEGG: ajs:Ajs_3861 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 4085746..4086864 Alicycliphilus denitrificans BC 10105992 YP_004128507.1 CDS Alide_3912 NC_014910.1 4087481 4089589 D TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: dia:Dtpsy_3135 primosomal protein N'; SMART: DEAD-like helicase ; helicase domain protein; primosomal protein n' 4087481..4089589 Alicycliphilus denitrificans BC 10105993 YP_004128508.1 CDS Alide_3913 NC_014910.1 4089652 4090839 R TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_0032 beta-ketothiolase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase complement(4089652..4090839) Alicycliphilus denitrificans BC 10105994 YP_004128509.1 CDS Alide_3914 NC_014910.1 4090851 4091630 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_0026 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase complement(4090851..4091630) Alicycliphilus denitrificans BC 10105995 YP_004128510.1 CDS Alide_3917 NC_014910.1 4094813 4095634 R KEGG: dac:Daci_0028 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(4094813..4095634) Alicycliphilus denitrificans BC 10105998 YP_004128511.1 CDS Alide_3918 NC_014910.1 4095643 4096824 R PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0029 extracellular ligand-binding receptor; ABC transporter substrate-binding protein complement(4095643..4096824) Alicycliphilus denitrificans BC 10105999 YP_004128512.1 CDS Alide_3919 NC_014910.1 4096836 4097873 R PFAM: inner-membrane translocator; KEGG: rfr:Rfer_4064 inner-membrane translocator; inner-membrane translocator complement(4096836..4097873) Alicycliphilus denitrificans BC 10106000 YP_004128513.1 CDS Alide_3920 NC_014910.1 4097873 4098754 R PFAM: inner-membrane translocator; KEGG: dac:Daci_0031 inner-membrane translocator; inner-membrane translocator complement(4097873..4098754) Alicycliphilus denitrificans BC 10106001 YP_004128514.1 CDS Alide_3921 NC_014910.1 4098751 4099605 R KEGG: dac:Daci_0032 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(4098751..4099605) Alicycliphilus denitrificans BC 10106002 YP_004128515.1 CDS Alide_3922 NC_014910.1 4099739 4100446 D PFAM: regulatory protein TetR; KEGG: dac:Daci_0033 TetR family transcriptional regulator; regulatory protein tetr 4099739..4100446 Alicycliphilus denitrificans BC 10106003 YP_004128516.1 CDS Alide_3923 NC_014910.1 4100441 4101445 R PFAM: Auxin Efflux Carrier; KEGG: ajs:Ajs_3864 auxin efflux carrier; auxin efflux carrier complement(4100441..4101445) Alicycliphilus denitrificans BC 10106004 YP_004128517.1 CDS Alide_3924 NC_014910.1 4101548 4103608 D PFAM: UvrD/REP helicase; KEGG: dia:Dtpsy_3138 UvrD/REP helicase; UvrD/REP helicase 4101548..4103608 Alicycliphilus denitrificans BC 10106005 YP_004128518.1 CDS Alide_3925 NC_014910.1 4103614 4104039 D manually curated; KEGG: dia:Dtpsy_3139 hypothetical protein; hypothetical protein 4103614..4104039 Alicycliphilus denitrificans BC 10106006 YP_004128519.1 CDS Alide_3926 NC_014910.1 4104036 4105205 D KEGG: dia:Dtpsy_3140 phospholipase A1; PFAM: phospholipase A1; phospholipase a(1) 4104036..4105205 Alicycliphilus denitrificans BC 10106007 YP_004128520.1 CDS Alide_3927 NC_014910.1 4105218 4106345 R PFAM: protein of unknown function DUF323; KEGG: reu:Reut_B4568 hypothetical protein; hypothetical protein complement(4105218..4106345) Alicycliphilus denitrificans BC 10106008 YP_004128521.1 CDS Alide_3928 NC_014910.1 4106377 4108176 R PFAM: sulfatase; KEGG: pap:PSPA7_3903 arylsulfatase; sulfatase complement(4106377..4108176) Alicycliphilus denitrificans BC 10106009 YP_004128522.1 CDS Alide_3929 NC_014910.1 4108274 4109215 R KEGG: reu:Reut_B4677 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; catechol 2,3-dioxygenase complement(4108274..4109215) Alicycliphilus denitrificans BC 10106010 YP_004128523.1 CDS Alide_3930 NC_014910.1 4109245 4111008 R PFAM: monooxygenase FAD-binding; KEGG: reu:Reut_B4679 monooxygenase, FAD-binding; monooxygenase fad-binding protein complement(4109245..4111008) Alicycliphilus denitrificans BC 10106011 YP_004128524.1 CDS Alide_3931 NC_014910.1 4111048 4111896 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_B4678 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; fumarylacetoacetate (faa) hydrolase complement(4111048..4111896) Alicycliphilus denitrificans BC 10106012 YP_004128525.1 CDS Alide_3932 NC_014910.1 4111969 4113111 R KEGG: vap:Vapar_4252 porin; porin complement(4111969..4113111) Alicycliphilus denitrificans BC 10106013 YP_004128526.1 CDS Alide_3933 NC_014910.1 4113310 4114008 D KEGG: reu:Reut_B4680 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 4113310..4114008 Alicycliphilus denitrificans BC 10106014 YP_004128527.1 CDS Alide_3934 NC_014910.1 4114254 4114640 D KEGG: dia:Dtpsy_3141 hypothetical protein; hypothetical protein 4114254..4114640 Alicycliphilus denitrificans BC 10106015 YP_004128528.1 CDS Alide_3935 NC_014910.1 4114718 4115194 R PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_3142 UspA domain protein; uspa domain-containing protein complement(4114718..4115194) Alicycliphilus denitrificans BC 10106016 YP_004128529.1 CDS Alide_3936 NC_014910.1 4115254 4116426 D TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: dia:Dtpsy_3143 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 4115254..4116426 Alicycliphilus denitrificans BC 10106017 YP_004128530.1 CDS Alide_3937 NC_014910.1 4116431 4117474 R KEGG: dia:Dtpsy_3145 hypothetical protein; hypothetical protein complement(4116431..4117474) Alicycliphilus denitrificans BC 10106018 YP_004128531.1 CDS Alide_3938 NC_014910.1 4117597 4118010 D TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: dar:Daro_3803 PAS; SMART: PAS domain containing protein; PAC repeat-containing protein; pas sensor protein 4117597..4118010 Alicycliphilus denitrificans BC 10106019 YP_004128532.1 CDS Alide_3939 NC_014910.1 4118455 4119285 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dac:Daci_4431 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase 4118455..4119285 Alicycliphilus denitrificans BC 10106020 YP_004128533.1 CDS Alide_3940 NC_014910.1 4119335 4120303 D KEGG: dac:Daci_4430 hypothetical protein; hypothetical protein 4119335..4120303 Alicycliphilus denitrificans BC 10106021 YP_004128534.1 CDS Alide_3941 NC_014910.1 4120422 4121402 D KEGG: dac:Daci_5794 hypothetical protein; hypothetical protein 4120422..4121402 Alicycliphilus denitrificans BC 10106022 YP_004128535.1 CDS Alide_3942 NC_014910.1 4121456 4122130 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4429 hypothetical protein; dimethylmenaquinone methyltransferase 4121456..4122130 Alicycliphilus denitrificans BC 10106023 YP_004128536.1 CDS Alide_3943 NC_014910.1 4122099 4122794 R KEGG: bpt:Bpet0387 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(4122099..4122794) Alicycliphilus denitrificans BC 10106024 YP_004128537.1 CDS Alide_3944 NC_014910.1 4122814 4124757 R KEGG: ajs:Ajs_3878 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(4122814..4124757) Alicycliphilus denitrificans BC 10106025 YP_004128538.1 CDS Alide_3945 NC_014910.1 4124947 4126827 D SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: pna:Pnap_0392 ATP-dependent metalloprotease FtsH; PFAM: AAA ATPase central domain protein; peptidase M41; ATP-dependent metalloprotease ftsh 4124947..4126827 Alicycliphilus denitrificans BC 10106026 YP_004128539.1 CDS Alide_3946 NC_014910.1 4126916 4127482 D PFAM: phosphoribosyltransferase; KEGG: tbd:Tbd_0103 transcriptional regulator PyrR, putative; phosphoribosyltransferase 4126916..4127482 Alicycliphilus denitrificans BC 10106027 YP_004128540.1 CDS Alide_3947 NC_014910.1 4127479 4128123 D PFAM: phosphoribosyltransferase; KEGG: rfr:Rfer_0394 phosphoribosyltransferase; phosphoribosyltransferase 4127479..4128123 Alicycliphilus denitrificans BC 10106028 YP_004128541.1 CDS Alide_3948 NC_014910.1 4128125 4128775 R KEGG: rfr:Rfer_0395 dienelactone hydrolase; dienelactone hydrolase complement(4128125..4128775) Alicycliphilus denitrificans BC 10106029 YP_004128542.1 CDS Alide_3949 NC_014910.1 4128783 4129766 R KEGG: azo:azo0111 alcohol dehydrogenase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; zinc-binding alcohol dehydrogenase family protein complement(4128783..4129766) Alicycliphilus denitrificans BC 10106030 YP_004128543.1 CDS Alide_3950 NC_014910.1 4129981 4130970 D KEGG: dia:Dtpsy_3156 hypothetical protein; hypothetical protein 4129981..4130970 Alicycliphilus denitrificans BC 10106031 YP_004128544.1 CDS Alide_3951 NC_014910.1 4130993 4132459 D PFAM: monooxygenase FAD-binding; KEGG: ajs:Ajs_3884 FAD dependent oxidoreductase; monooxygenase fad-binding protein 4130993..4132459 Alicycliphilus denitrificans BC 10106032 YP_004128545.1 CDS Alide_3952 NC_014910.1 4132456 4133562 D KEGG: ajs:Ajs_3885 uncharacterized peroxidase-related enzyme; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 4132456..4133562 Alicycliphilus denitrificans BC 10106033 YP_004128546.1 CDS Alide_3953 NC_014910.1 4133622 4134872 R PFAM: domain of unknown function DUF1745; FIST C domain; KEGG: dia:Dtpsy_3160 domain of unknown function DUF1745; hypothetical protein complement(4133622..4134872) Alicycliphilus denitrificans BC 10106034 YP_004128547.1 CDS Alide_3954 NC_014910.1 4134897 4135679 R KEGG: dia:Dtpsy_3161 hypothetical protein; hypothetical protein complement(4134897..4135679) Alicycliphilus denitrificans BC 10106035 YP_004128548.1 CDS Alide_3955 NC_014910.1 4135907 4136338 D KEGG: dia:Dtpsy_3162 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 4135907..4136338 Alicycliphilus denitrificans BC 10106036 YP_004128549.1 CDS Alide_3956 NC_014910.1 4136396 4137148 R KEGG: ajs:Ajs_3890 protein tyrosine/serine phosphatase; protein tyrosine/serine phosphatase complement(4136396..4137148) Alicycliphilus denitrificans BC 10106037 YP_004128550.1 CDS Alide_3957 NC_014910.1 4137342 4137731 R KEGG: dia:Dtpsy_0399 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; 50S ribosomal protein L17 complement(4137342..4137731) Alicycliphilus denitrificans BC 10106039 YP_004128551.1 CDS Alide_3958 NC_014910.1 4137820 4138815 R TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: dia:Dtpsy_0398 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha complement(4137820..4138815) Alicycliphilus denitrificans BC 10106040 YP_004128552.1 CDS Alide_3959 NC_014910.1 4138928 4139602 R TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: aav:Aave_0625 30S ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 complement(4138928..4139602) Alicycliphilus denitrificans BC 10106041 YP_004128553.1 CDS Alide_3960 NC_014910.1 4139643 4140047 R KEGG: aav:Aave_0624 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; 30S ribosomal protein S11 complement(4139643..4140047) Alicycliphilus denitrificans BC 10106042 YP_004128554.1 CDS Alide_3961 NC_014910.1 4140063 4140428 R KEGG: dia:Dtpsy_0395 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13; 30S ribosomal protein S13 complement(4140063..4140428) Alicycliphilus denitrificans BC 10106043 YP_004128555.1 CDS Alide_3962 NC_014910.1 4140452 4140565 R KEGG: ctt:CtCNB1_4432 ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; 50S ribosomal protein L36 complement(4140452..4140565) Alicycliphilus denitrificans BC 10106044 YP_004128556.1 CDS Alide_3963 NC_014910.1 4140713 4142032 R manually curated; TIGRFAM: preprotein translocase, SecY subunit; KEGG: dia:Dtpsy_0393 preprotein translocase subunit SecY; PFAM: SecY protein; preprotein translocase, secy subunit complement(4140713..4142032) Alicycliphilus denitrificans BC 10106045 YP_004128557.1 CDS Alide_3964 NC_014910.1 4142056 4142487 R TIGRFAM: ribosomal protein L15; KEGG: ctt:CtCNB1_4434 ribosomal protein L15; 50S ribosomal protein L15 complement(4142056..4142487) Alicycliphilus denitrificans BC 10106046 YP_004128558.1 CDS Alide_3965 NC_014910.1 4142498 4142680 R KEGG: dia:Dtpsy_0391 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; 50S ribosomal protein L30 complement(4142498..4142680) Alicycliphilus denitrificans BC 10106047 YP_004128559.1 CDS Alide_3966 NC_014910.1 4142693 4143214 R KEGG: dia:Dtpsy_0390 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; 30S ribosomal protein S5 complement(4142693..4143214) Alicycliphilus denitrificans BC 10106048 YP_004128560.1 CDS Alide_3967 NC_014910.1 4143230 4143595 R KEGG: dia:Dtpsy_0389 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; 50S ribosomal protein L18 complement(4143230..4143595) Alicycliphilus denitrificans BC 10106049 YP_004128561.1 CDS Alide_3968 NC_014910.1 4143607 4144140 R KEGG: dia:Dtpsy_0388 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 complement(4143607..4144140) Alicycliphilus denitrificans BC 10106050 YP_004128562.1 CDS Alide_3969 NC_014910.1 4144165 4144560 R PFAM: ribosomal protein S8; KEGG: aav:Aave_0615 30S ribosomal protein S8; 30S ribosomal protein S8 complement(4144165..4144560) Alicycliphilus denitrificans BC 10106051 YP_004128563.1 CDS Alide_3970 NC_014910.1 4144582 4144887 R PFAM: ribosomal protein S14; KEGG: dia:Dtpsy_0386 30S ribosomal protein S14; 30S ribosomal protein S14 complement(4144582..4144887) Alicycliphilus denitrificans BC 10106052 YP_004128564.1 CDS Alide_3971 NC_014910.1 4144897 4145436 R KEGG: dia:Dtpsy_0385 50S ribosomal protein L5; 50S ribosomal protein L5 complement(4144897..4145436) Alicycliphilus denitrificans BC 10106053 YP_004128565.1 CDS Alide_3972 NC_014910.1 4145446 4145766 R TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: dia:Dtpsy_0384 50S ribosomal protein L24; SMART: KOW domain protein; 50S ribosomal protein L24 complement(4145446..4145766) Alicycliphilus denitrificans BC 10106054 YP_004128566.1 CDS Alide_3973 NC_014910.1 4145777 4146145 R KEGG: dia:Dtpsy_0383 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; 50S ribosomal protein L14 complement(4145777..4146145) Alicycliphilus denitrificans BC 10106055 YP_004128567.1 CDS Alide_3974 NC_014910.1 4146353 4147951 R KEGG: aav:Aave_0610 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase complement(4146353..4147951) Alicycliphilus denitrificans BC 10106056 YP_004128568.1 CDS Alide_3975 NC_014910.1 4148074 4148835 D KEGG: ajs:Ajs_0383 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; regulatory protein Crp; regulatory protein deor 4148074..4148835 Alicycliphilus denitrificans BC 10106057 YP_004128569.1 CDS Alide_3976 NC_014910.1 4148858 4150363 D KEGG: dia:Dtpsy_0373 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; glycerol kinase 4148858..4150363 Alicycliphilus denitrificans BC 10106058 YP_004128570.1 CDS Alide_3977 NC_014910.1 4150520 4151359 D TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: dia:Dtpsy_0372 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase 4150520..4151359 Alicycliphilus denitrificans BC 10106059 YP_004128571.1 CDS Alide_3978 NC_014910.1 4151459 4153243 D PFAM: Spore coat protein CotH; KEGG: glo:Glov_2109 spore coat protein CotH; spore coat protein coth 4151459..4153243 Alicycliphilus denitrificans BC 10106060 YP_004128572.1 CDS Alide_3979 NC_014910.1 4153322 4154194 R KEGG: dia:Dtpsy_0371 4-hydroxybenzoate polyprenyl transferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate polyprenyltransferase complement(4153322..4154194) Alicycliphilus denitrificans BC 10106061 YP_004128573.1 CDS Alide_3980 NC_014910.1 4154282 4154806 R PFAM: Ferritin Dps family protein; KEGG: dia:Dtpsy_0369 ferritin Dps family protein; ferritin complement(4154282..4154806) Alicycliphilus denitrificans BC 10106062 YP_004128574.1 CDS Alide_3981 NC_014910.1 4154945 4155910 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0368 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4154945..4155910) Alicycliphilus denitrificans BC 10106063 YP_004128575.1 CDS Alide_3982 NC_014910.1 4155956 4158073 R TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; KEGG: ajs:Ajs_0376 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase domain protein; ATP-dependent DNA helicase RecG complement(4155956..4158073) Alicycliphilus denitrificans BC 10106064 YP_004128576.1 CDS Alide_3983 NC_014910.1 4158250 4159515 D TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dia:Dtpsy_0366 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 4158250..4159515 Alicycliphilus denitrificans BC 10106065 YP_004128577.1 CDS Alide_3984 NC_014910.1 4159604 4160707 D KEGG: dia:Dtpsy_0365 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; s-adenosylmethionine/tRNA-ribosyltransferase- isomerase 4159604..4160707 Alicycliphilus denitrificans BC 10106066 YP_004128578.1 CDS Alide_3985 NC_014910.1 4160855 4161736 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0373 hypothetical protein; hypothetical protein 4160855..4161736 Alicycliphilus denitrificans BC 10106067 YP_004128579.1 CDS Alide_3986 NC_014910.1 4161795 4163402 R KEGG: ctt:CtCNB1_4698 gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(4161795..4163402) Alicycliphilus denitrificans BC 10106068 YP_004128580.1 CDS Alide_3987 NC_014910.1 4163408 4164370 R KEGG: vei:Veis_0179 hypothetical protein; hypothetical protein complement(4163408..4164370) Alicycliphilus denitrificans BC 10106069 YP_004128581.1 CDS Alide_3988 NC_014910.1 4164497 4165402 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_0178 LysR family transcriptional regulator; LysR family transcriptional regulator 4164497..4165402 Alicycliphilus denitrificans BC 10106070 YP_004128582.1 CDS Alide_3989 NC_014910.1 4165411 4166127 R KEGG: dia:Dtpsy_0363 uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; uracil-DNA glycosylase complement(4165411..4166127) Alicycliphilus denitrificans BC 10106071 YP_004128583.1 CDS Alide_3990 NC_014910.1 4166188 4166988 R KEGG: dia:Dtpsy_0361 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; indole-3-glycerol phosphate synthase complement(4166188..4166988) Alicycliphilus denitrificans BC 10106072 YP_004128584.1 CDS Alide_3991 NC_014910.1 4166995 4167147 R KEGG: ctt:CtCNB1_4464 hypothetical protein; hypothetical protein complement(4166995..4167147) Alicycliphilus denitrificans BC 10106073 YP_004128585.1 CDS Alide_3992 NC_014910.1 4167144 4168175 R TIGRFAM: anthranilate phosphoribosyltransferase; KEGG: dia:Dtpsy_0359 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase complement(4167144..4168175) Alicycliphilus denitrificans BC 10106074 YP_004128586.1 CDS Alide_3993 NC_014910.1 4168175 4168744 R KEGG: dia:Dtpsy_0358 anthranilate synthase component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; glutamine amidotransferase of anthranilate synthase complement(4168175..4168744) Alicycliphilus denitrificans BC 10106075 YP_004128587.1 CDS Alide_3994 NC_014910.1 4169867 4170613 D KEGG: bpt:Bpet1027 receptor protein-tyrosine kinase; receptor protein-tyrosine kinase 4169867..4170613 Alicycliphilus denitrificans BC 10106076 YP_004128588.1 CDS Alide_3995 NC_014910.1 4170733 4170945 D PFAM: Prophage CP4-57 regulatory; KEGG: ajs:Ajs_1320 phage transcriptional regulator, AlpA; prophage cp4-57 regulatory 4170733..4170945 Alicycliphilus denitrificans BC 10106077 YP_004128589.1 CDS Alide_3996 NC_014910.1 4170988 4171863 D KEGG: ajs:Ajs_1319 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 4170988..4171863 Alicycliphilus denitrificans BC 10106078 YP_004128590.1 CDS Alide_3997 NC_014910.1 4171847 4172116 D KEGG: ajs:Ajs_1318 hypothetical protein; hypothetical protein 4171847..4172116 Alicycliphilus denitrificans BC 10106079 YP_004128591.1 CDS Alide_3998 NC_014910.1 4172109 4173782 D KEGG: bpt:Bpet1031 hypothetical protein; hypothetical protein 4172109..4173782 Alicycliphilus denitrificans BC 10106080 YP_004128592.1 CDS Alide_3999 NC_014910.1 4173797 4174357 D PFAM: Protein of unknown function DUF2857; KEGG: rme:Rmet_2293 hypothetical protein; hypothetical protein 4173797..4174357 Alicycliphilus denitrificans BC 10106081 YP_004128593.1 CDS Alide_4000 NC_014910.1 4174361 4175593 D KEGG: bpt:Bpet1033 hypothetical protein; hypothetical protein 4174361..4175593 Alicycliphilus denitrificans BC 10106082 YP_004128594.1 CDS Alide_4001 NC_014910.1 4176013 4176807 D KEGG: bpt:Bpet1034 transposon; TIGRFAM: Domain of unknown function DUF1845; PFAM: Domain of unknown function DUF1845; hypothetical protein 4176013..4176807 Alicycliphilus denitrificans BC 10106083 YP_004128595.1 CDS Alide_4002 NC_014910.1 4176804 4177331 D PFAM: Protein of unknown function DUF3158; KEGG: bpt:Bpet1035 hypothetical protein; hypothetical protein 4176804..4177331 Alicycliphilus denitrificans BC 10106084 YP_004128596.1 CDS Alide_4003 NC_014910.1 4177405 4177857 D PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ajs:Ajs_1446 single-stranded DNA-binding protein; single-strand binding protein/primosomal replication protein n 4177405..4177857 Alicycliphilus denitrificans BC 10106085 YP_004128597.1 CDS Alide_4004 NC_014910.1 4178134 4179306 D PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; KEGG: ajs:Ajs_1445 DNA topoisomerase III; SMART: DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; DNA topoisomerase 4178134..4179306 Alicycliphilus denitrificans BC 10106086 YP_004128598.1 CDS Alide_4005 NC_014910.1 4179316 4180119 R KEGG: ctt:CtCNB1_3734 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; istb domain-containing protein ATP-binding protein complement(4179316..4180119) Alicycliphilus denitrificans BC 10106087 YP_004128599.1 CDS Alide_4006 NC_014910.1 4180109 4181635 R PFAM: Integrase catalytic region; regulatory protein MerR; KEGG: ctt:CtCNB1_2459 IstA; integrase catalytic region protein complement(4180109..4181635) Alicycliphilus denitrificans BC 10106088 YP_004128600.1 CDS Alide_4007 NC_014910.1 4181744 4182091 D KEGG: rme:Rmet_2326 hypothetical protein; hypothetical protein 4181744..4182091 Alicycliphilus denitrificans BC 10106089 YP_004128601.1 CDS Alide_4008 NC_014910.1 4182156 4183265 D KEGG: ajs:Ajs_1420 hypothetical protein; hypothetical protein 4182156..4183265 Alicycliphilus denitrificans BC 10106090 YP_004128602.1 CDS Alide_4009 NC_014910.1 4183315 4183635 D KEGG: ajs:Ajs_1419 hypothetical protein; hypothetical protein 4183315..4183635 Alicycliphilus denitrificans BC 10106091 YP_004128603.1 CDS Alide_4010 NC_014910.1 4183725 4184030 D KEGG: ajs:Ajs_1286 hypothetical protein; hypothetical protein 4183725..4184030 Alicycliphilus denitrificans BC 10106092 YP_004128604.1 CDS Alide_4011 NC_014910.1 4184163 4186442 D SMART: DEAD-like helicase; KEGG: rme:Rmet_2330 helicase-like protein; dead-like helicase 4184163..4186442 Alicycliphilus denitrificans BC 10106093 YP_004128605.1 CDS Alide_4012 NC_014910.1 4186580 4187179 D TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: pla:Plav_3409 hypothetical protein; integrating conjugative element protein pill, pfgi-1 4186580..4187179 Alicycliphilus denitrificans BC 10106094 YP_004128606.1 CDS Alide_4013 NC_014910.1 4187176 4187820 D KEGG: bpt:Bpet1067 hypothetical protein; hypothetical protein 4187176..4187820 Alicycliphilus denitrificans BC 10106095 YP_004128607.1 CDS Alide_4014 NC_014910.1 4187835 4188560 D KEGG: bpt:Bpet1068 hypothetical protein; hypothetical protein 4187835..4188560 Alicycliphilus denitrificans BC 10106096 YP_004128608.1 CDS Alide_4015 NC_014910.1 4188542 4189144 D PFAM: Lytic transglycosylase catalytic; KEGG: bpt:Bpet1069 hypothetical protein; lytic transglycosylase 4188542..4189144 Alicycliphilus denitrificans BC 10106097 YP_004128609.1 CDS Alide_4016 NC_014910.1 4189141 4189689 D KEGG: bpt:Bpet1070 hypothetical protein; hypothetical protein 4189141..4189689 Alicycliphilus denitrificans BC 10106098 YP_004128610.1 CDS Alide_4017 NC_014910.1 4189694 4191886 D manually curated; KEGG: ajs:Ajs_1274 hypothetical protein; hypothetical protein 4189694..4191886 Alicycliphilus denitrificans BC 10106099 YP_004128611.1 CDS Alide_4018 NC_014910.1 4191883 4192644 D TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: dia:Dtpsy_1174 hypothetical protein; integrating conjugative element protein, pfl4697, membrane 4191883..4192644 Alicycliphilus denitrificans BC 10106100 YP_004128612.1 CDS Alide_4019 NC_014910.1 4192743 4193126 D PFAM: Protein of unknown function, RAQPRD; KEGG: bpt:Bpet1073 hypothetical protein; hypothetical protein 4192743..4193126 Alicycliphilus denitrificans BC 10106101 YP_004128613.1 CDS Alide_4020 NC_014910.1 4193123 4193356 D KEGG: ajs:Ajs_1263 hypothetical protein; hypothetical protein 4193123..4193356 Alicycliphilus denitrificans BC 10106102 YP_004128614.1 CDS Alide_4021 NC_014910.1 4193373 4193732 D KEGG: bpt:Bpet1075 hypothetical protein; hypothetical protein 4193373..4193732 Alicycliphilus denitrificans BC 10106103 YP_004128615.1 CDS Alide_4022 NC_014910.1 4193744 4194154 D KEGG: bpt:Bpet1076 hypothetical protein; hypothetical protein 4193744..4194154 Alicycliphilus denitrificans BC 10106104 YP_004128616.1 CDS Alide_4023 NC_014910.1 4194151 4194843 D KEGG: bpt:Bpet1077 hypothetical protein; hypothetical protein 4194151..4194843 Alicycliphilus denitrificans BC 10106105 YP_004128617.1 CDS Alide_4024 NC_014910.1 4194840 4195754 D KEGG: dia:Dtpsy_1167 secreted protein; secreted protein 4194840..4195754 Alicycliphilus denitrificans BC 10106106 YP_004128618.1 CDS Alide_4025 NC_014910.1 4195744 4197162 D TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: bpt:Bpet1079 hypothetical protein; integrating conjugative element protein, pfl4705 4195744..4197162 Alicycliphilus denitrificans BC 10106107 YP_004128619.1 CDS Alide_4026 NC_014910.1 4197143 4197592 D TIGRFAM: Conjugative transfer region lipoprotein; KEGG: ajs:Ajs_1257 secreted protein; conjugative transfer region lipoprotein 4197143..4197592 Alicycliphilus denitrificans BC 10106108 YP_004128620.1 CDS Alide_4027 NC_014910.1 4197592 4200474 D KEGG: ajs:Ajs_1398 hypothetical protein; hypothetical protein 4197592..4200474 Alicycliphilus denitrificans BC 10106109 YP_004128621.1 CDS Alide_4028 NC_014910.1 4200499 4201263 D PFAM: DSBA oxidoreductase; KEGG: bpt:Bpet1082 hypothetical protein; dsba oxidoreductase 4200499..4201263 Alicycliphilus denitrificans BC 10106110 YP_004128622.1 CDS Alide_4029 NC_014910.1 4201440 4201934 D KEGG: bpt:Bpet1083 DNA repair protein RadC-like protein; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein radc 4201440..4201934 Alicycliphilus denitrificans BC 10106111 YP_004128623.1 CDS Alide_4030 NC_014910.1 4202098 4202544 D KEGG: bpt:Bpet1084 secreted protein; TIGRFAM: protein of unknown function DUF1525; PFAM: protein of unknown function DUF1525; hypothetical protein 4202098..4202544 Alicycliphilus denitrificans BC 10106112 YP_004128624.1 CDS Alide_4031 NC_014910.1 4202541 4203488 D KEGG: bpt:Bpet1502 hypothetical protein; TIGRFAM: protein of unknown function DUF1527; PFAM: protein of unknown function DUF1527; hypothetical protein 4202541..4203488 Alicycliphilus denitrificans BC 10106113 YP_004128625.1 CDS Alide_4032 NC_014910.1 4203499 4204893 D TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: bpt:Bpet1086 hypothetical protein; integrating conjugative element protein, pfl4711 4203499..4204893 Alicycliphilus denitrificans BC 10106114 YP_004128626.1 CDS Alide_4033 NC_014910.1 4204890 4205237 D KEGG: bpt:Bpet1504 hypothetical protein; hypothetical protein 4204890..4205237 Alicycliphilus denitrificans BC 10106115 YP_004128627.1 CDS Alide_4034 NC_014910.1 4205253 4206776 D KEGG: ajs:Ajs_1391 hypothetical protein; hypothetical protein 4205253..4206776 Alicycliphilus denitrificans BC 10106116 YP_004128628.1 CDS Alide_4035 NC_014910.1 4206783 4207142 R KEGG: ajs:Ajs_1390 hypothetical protein; hypothetical protein complement(4206783..4207142) Alicycliphilus denitrificans BC 10106117 YP_004128629.1 CDS Alide_4036 NC_014910.1 4207227 4207859 R PFAM: RES domain protein; KEGG: bpt:Bpet1090 hypothetical protein; res domain-containing protein complement(4207227..4207859) Alicycliphilus denitrificans BC 10106118 YP_004128630.1 CDS Alide_4037 NC_014910.1 4207872 4208498 R KEGG: ajs:Ajs_1388 hypothetical protein; hypothetical protein complement(4207872..4208498) Alicycliphilus denitrificans BC 10106119 YP_004128631.1 CDS Alide_4038 NC_014910.1 4208814 4210676 D PFAM: Relaxase; protein of unknown function DUF1528; KEGG: har:HEAR2031 hypothetical protein; relaxase 4208814..4210676 Alicycliphilus denitrificans BC 10106120 YP_004128632.1 CDS Alide_4039 NC_014910.1 4210727 4211209 R manually curated; KEGG: dds:Ddes_1324 hypothetical protein; hypothetical protein complement(4210727..4211209) Alicycliphilus denitrificans BC 10106121 YP_004128633.1 CDS Alide_4042 NC_014910.1 4211785 4213725 R KEGG: pla:Plav_3441 hypothetical protein; hypothetical protein complement(4211785..4213725) Alicycliphilus denitrificans BC 10106124 YP_004128634.1 CDS Alide_4043 NC_014910.1 4213722 4214756 R KEGG: pla:Plav_3442 hypothetical protein; hypothetical protein complement(4213722..4214756) Alicycliphilus denitrificans BC 10106125 YP_004128635.1 CDS Alide_4044 NC_014910.1 4215033 4216559 D PFAM: Integrase catalytic region; regulatory protein MerR; KEGG: ctt:CtCNB1_2459 IstA; integrase catalytic region protein 4215033..4216559 Alicycliphilus denitrificans BC 10106126 YP_004128636.1 CDS Alide_4045 NC_014910.1 4216549 4217352 D KEGG: ctt:CtCNB1_3734 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; istb domain-containing protein ATP-binding protein 4216549..4217352 Alicycliphilus denitrificans BC 10106127 YP_004128637.1 CDS Alide_4046 NC_014910.1 4217581 4217793 R KEGG: bpf:BpOF4_15365 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; hypothetical protein complement(4217581..4217793) Alicycliphilus denitrificans BC 10106128 YP_004128638.1 CDS Alide_4047 NC_014910.1 4218240 4219187 R KEGG: pna:Pnap_4804 hypothetical protein; hypothetical protein complement(4218240..4219187) Alicycliphilus denitrificans BC 10106129 YP_004128639.1 CDS Alide_4048 NC_014910.1 4219175 4219723 R PFAM: RES domain protein; KEGG: avn:Avin_32410 hypothetical protein; res domain-containing protein complement(4219175..4219723) Alicycliphilus denitrificans BC 10106130 YP_004128640.1 CDS Alide_4049 NC_014910.1 4219720 4220091 R KEGG: avn:Avin_32400 hypothetical protein; hypothetical protein complement(4219720..4220091) Alicycliphilus denitrificans BC 10106131 YP_004128641.1 CDS Alide_4050 NC_014910.1 4220406 4220735 R PFAM: Chorismate mutase, type II; KEGG: dia:Dtpsy_0357 chorismate mutase; chorismate mutase, type ii complement(4220406..4220735) Alicycliphilus denitrificans BC 10106132 YP_004128642.1 CDS Alide_4051 NC_014910.1 4220732 4222231 R TIGRFAM: anthranilate synthase component I; KEGG: dia:Dtpsy_0356 anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; anthranilate synthase component i complement(4220732..4222231) Alicycliphilus denitrificans BC 10106133 YP_004128643.1 CDS Alide_4052 NC_014910.1 4222574 4224334 D KEGG: dia:Dtpsy_0354 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 4222574..4224334 Alicycliphilus denitrificans BC 10106134 YP_004128644.1 CDS Alide_4053 NC_014910.1 4224497 4227262 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: slt:Slit_0879 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein; PAC repeat-containing protein; diguanylate cyclase 4224497..4227262 Alicycliphilus denitrificans BC 10106135 YP_004128645.1 CDS Alide_4054 NC_014910.1 4227201 4227974 R KEGG: dia:Dtpsy_0352 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase complement(4227201..4227974) Alicycliphilus denitrificans BC 10106136 YP_004128646.1 CDS Alide_4055 NC_014910.1 4228142 4228516 D KEGG: ajs:Ajs_0362 hypothetical protein; hypothetical protein 4228142..4228516 Alicycliphilus denitrificans BC 10106137 YP_004128647.1 CDS Alide_4056 NC_014910.1 4228535 4229215 R TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: dia:Dtpsy_0350 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(4228535..4229215) Alicycliphilus denitrificans BC 10106138 YP_004128648.1 CDS Alide_4057 NC_014910.1 4229264 4229671 D PFAM: ApaG domain protein; KEGG: dia:Dtpsy_0349 ApaG; ApaG domain-containing protein 4229264..4229671 Alicycliphilus denitrificans BC 10106139 YP_004128649.1 CDS Alide_4058 NC_014910.1 4229668 4231656 D PFAM: site-specific recombinase Gcr; KEGG: ajs:Ajs_0359 site-specific recombinase transmembrane protein; site-specific recombinase gcr 4229668..4231656 Alicycliphilus denitrificans BC 10106140 YP_004128650.1 CDS Alide_4059 NC_014910.1 4231826 4233091 D PFAM: sodium/hydrogen exchanger; KEGG: ajs:Ajs_0358 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4231826..4233091 Alicycliphilus denitrificans BC 10106141 YP_004128651.1 CDS Alide_4060 NC_014910.1 4233081 4234205 D PFAM: glutamate--cysteine ligase GCS2; KEGG: dia:Dtpsy_0346 carboxylate-amine ligase; glutamate--cysteine ligase gcs2 4233081..4234205 Alicycliphilus denitrificans BC 10106142 YP_004128652.1 CDS Alide_4061 NC_014910.1 4234208 4235191 D TIGRFAM: thiamine-monophosphate kinase; KEGG: ajs:Ajs_0356 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 4234208..4235191 Alicycliphilus denitrificans BC 10106143 YP_004128653.1 CDS Alide_4062 NC_014910.1 4235179 4235868 R PFAM: regulatory protein TetR; KEGG: bte:BTH_II0441 TetR family transcriptional regulator; regulatory protein tetr complement(4235179..4235868) Alicycliphilus denitrificans BC 10106144 YP_004128654.1 CDS Alide_4063 NC_014910.1 4236027 4237769 D PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: eba:ebA5073 poly-beta-hydroxyalkanoate synthase; poly-beta-hydroxybutyrate polymerase domain-containing protein 4236027..4237769 Alicycliphilus denitrificans BC 10106145 YP_004128655.1 CDS Alide_4064 NC_014910.1 4237783 4239255 D KEGG: har:HEAR2593 outer membrane transport protein involved in copper (silver) tolerance (CusC); TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family 4237783..4239255 Alicycliphilus denitrificans BC 10106146 YP_004128656.1 CDS Alide_4065 NC_014910.1 4239252 4240325 D PFAM: secretion protein HlyD family protein; KEGG: har:HEAR2592 ABC transport system, membrane protein; secretion protein hlyd family protein 4239252..4240325 Alicycliphilus denitrificans BC 10106147 YP_004128657.1 CDS Alide_4066 NC_014910.1 4240329 4243076 D KEGG: dac:Daci_0759 ABC transporter related; PFAM: ABC transporter related; ABC transporter; SMART: AAA ATPase; ABC transporter 4240329..4243076 Alicycliphilus denitrificans BC 10106148 YP_004128658.1 CDS Alide_4067 NC_014910.1 4243076 4244209 D PFAM: ABC transporter; KEGG: dia:Dtpsy_1496 ABC transporter; ABC transporter 4243076..4244209 Alicycliphilus denitrificans BC 10106149 YP_004128659.1 CDS Alide_4068 NC_014910.1 4244228 4245670 D KEGG: rpf:Rpic12D_4426 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; PFAM: MaoC domain protein dehydratase; phosphate acetyl/butaryl transferase; phosphate acetyltransferase 4244228..4245670 Alicycliphilus denitrificans BC 10106150 YP_004128660.1 CDS Alide_4069 NC_014910.1 4245667 4246857 D KEGG: dac:Daci_0754 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 4245667..4246857 Alicycliphilus denitrificans BC 10106151 YP_004128661.1 CDS Alide_4070 NC_014910.1 4246867 4247394 D PFAM: phosphatidylglycerophosphatase A; KEGG: dia:Dtpsy_0344 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase a 4246867..4247394 Alicycliphilus denitrificans BC 10106152 YP_004128662.1 CDS Alide_4071 NC_014910.1 4247401 4247919 D PFAM: CinA domain protein; KEGG: ajs:Ajs_0354 CinA domain-containing protein; cina domain-containing protein 4247401..4247919 Alicycliphilus denitrificans BC 10106153 YP_004128663.1 CDS Alide_4072 NC_014910.1 4247932 4249566 R KEGG: lch:Lcho_3216 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein complement(4247932..4249566) Alicycliphilus denitrificans BC 10106154 YP_004128664.1 CDS Alide_4073 NC_014910.1 4249569 4251815 R TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: slt:Slit_1460 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; diguanylate cyclase complement(4249569..4251815) Alicycliphilus denitrificans BC 10106155 YP_004128665.1 CDS Alide_4074 NC_014910.1 4252097 4252702 R KEGG: nhl:Nhal_1312 response regulator receiver; PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; response regulator receiver complement(4252097..4252702) Alicycliphilus denitrificans BC 10106156 YP_004128666.1 CDS Alide_4075 NC_014910.1 4252699 4254213 R KEGG: lch:Lcho_2722 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; pas sensor protein complement(4252699..4254213) Alicycliphilus denitrificans BC 10106157 YP_004128667.1 CDS Alide_4076 NC_014910.1 4254438 4255253 R PFAM: SEC-C motif domain protein; KEGG: dia:Dtpsy_0342 sec-C motif domain protein; sec-c motif domain-containing protein complement(4254438..4255253) Alicycliphilus denitrificans BC 10106158 YP_004128668.1 CDS Alide_4077 NC_014910.1 4255686 4256171 R KEGG: dia:Dtpsy_0340 hypothetical protein; hypothetical protein complement(4255686..4256171) Alicycliphilus denitrificans BC 10106159 YP_004128669.1 CDS Alide_4078 NC_014910.1 4256161 4257429 R KEGG: ajs:Ajs_0350 RNA methylase; PFAM: RNA methylase; THUMP domain-containing protein; rRNA (guanine-n(2)-)-methyltransferase complement(4256161..4257429) Alicycliphilus denitrificans BC 10106160 YP_004128670.1 CDS Alide_4079 NC_014910.1 4257542 4259365 D KEGG: aav:Aave_0421 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 4257542..4259365 Alicycliphilus denitrificans BC 10106161 YP_004128671.1 CDS Alide_4080 NC_014910.1 4259367 4259810 R KEGG: ajs:Ajs_0349 hypothetical protein; hypothetical protein complement(4259367..4259810) Alicycliphilus denitrificans BC 10106162 YP_004128672.1 CDS Alide_4081 NC_014910.1 4259824 4261377 R KEGG: dia:Dtpsy_0337 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; RNA polymerase sigma-54 factor, rpon complement(4259824..4261377) Alicycliphilus denitrificans BC 10106163 YP_004128673.1 CDS Alide_4082 NC_014910.1 4261427 4262227 R KEGG: aav:Aave_0418 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(4261427..4262227) Alicycliphilus denitrificans BC 10106164 YP_004128674.1 CDS Alide_4083 NC_014910.1 4262224 4262868 R KEGG: dia:Dtpsy_0335 lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; lipopolysaccharide transport periplasmic protein lpta complement(4262224..4262868) Alicycliphilus denitrificans BC 10106165 YP_004128675.1 CDS Alide_4084 NC_014910.1 4262988 4263644 R PFAM: DSBA oxidoreductase; KEGG: dia:Dtpsy_0334 DsbA oxidoreductase; dsba oxidoreductase complement(4262988..4263644) Alicycliphilus denitrificans BC 10106166 YP_004128676.1 CDS Alide_4085 NC_014910.1 4263724 4264359 R PFAM: Sporulation domain-containing protein; KEGG: dia:Dtpsy_0333 sporulation domain protein; sporulation domain-containing protein complement(4263724..4264359) Alicycliphilus denitrificans BC 10106167 YP_004128677.1 CDS Alide_4086 NC_014910.1 4264372 4266075 R TIGRFAM: arginyl-tRNA synthetase; KEGG: ajs:Ajs_0343 arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(4264372..4266075) Alicycliphilus denitrificans BC 10106168 YP_004128678.1 CDS Alide_4087 NC_014910.1 4266200 4266526 D PFAM: PsiF repeat-containing protein; KEGG: dia:Dtpsy_0331 PsiF repeat protein; psif repeat-containing protein 4266200..4266526 Alicycliphilus denitrificans BC 10106169 YP_004128679.1 CDS Alide_4088 NC_014910.1 4266584 4267039 R PFAM: Protein of unknown function DUF2214, membrane; KEGG: ajs:Ajs_0341 transmembrane protein; hypothetical protein complement(4266584..4267039) Alicycliphilus denitrificans BC 10106170 YP_004128680.1 CDS Alide_4089 NC_014910.1 4267133 4268470 R PFAM: sodium:dicarboxylate symporter; KEGG: dac:Daci_2923 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(4267133..4268470) Alicycliphilus denitrificans BC 10106171 YP_004128681.1 CDS Alide_4090 NC_014910.1 4268671 4271331 D KEGG: dac:Daci_2922 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; ATP-binding domain-containing protein 4268671..4271331 Alicycliphilus denitrificans BC 10106172 YP_004128682.1 CDS Alide_4091 NC_014910.1 4271397 4272035 R KEGG: dac:Daci_2921 two component LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; LuxR family transcriptional regulator complement(4271397..4272035) Alicycliphilus denitrificans BC 10106173 YP_004128683.1 CDS Alide_4092 NC_014910.1 4272049 4272981 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0328 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4272049..4272981) Alicycliphilus denitrificans BC 10106174 YP_004128684.1 CDS Alide_4093 NC_014910.1 4273216 4275414 D TIGRFAM: malate synthase G; KEGG: dia:Dtpsy_0327 malate synthase G; PFAM: Malate synthase family protein; malate synthase g 4273216..4275414 Alicycliphilus denitrificans BC 10106175 YP_004128685.1 CDS Alide_4094 NC_014910.1 4275491 4275775 D manually curated; KEGG: ajs:Ajs_0337 hypothetical protein; hypothetical protein 4275491..4275775 Alicycliphilus denitrificans BC 10106176 YP_004128686.1 CDS Alide_4095 NC_014910.1 4275751 4275939 D KEGG: dia:Dtpsy_0325 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 4275751..4275939 Alicycliphilus denitrificans BC 10106177 YP_004128687.1 CDS Alide_4096 NC_014910.1 4275962 4276750 D PFAM: protein of unknown function DUF169; KEGG: bbt:BBta_4610 hypothetical protein; hypothetical protein 4275962..4276750 Alicycliphilus denitrificans BC 10106178 YP_004128688.1 CDS Alide_4097 NC_014910.1 4276775 4277542 D PFAM: glutamine amidotransferase class-II; KEGG: ajs:Ajs_0335 glutamine amidotransferase, class-II; glutamine amidotransferase class-ii 4276775..4277542 Alicycliphilus denitrificans BC 10106179 YP_004128689.1 CDS Alide_4098 NC_014910.1 4283380 4284399 R TIGRFAM: glutathione synthetase; KEGG: dia:Dtpsy_3256 glutathione synthetase; PFAM: glutathione synthetase ATP-binding; glutathione synthetase domain protein; glutathione synthetase complement(4283380..4284399) Alicycliphilus denitrificans BC 10106185 YP_004128690.1 CDS Alide_4099 NC_014910.1 4284359 4285600 R KEGG: dia:Dtpsy_3257 benzoate transporter; TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; benzoate transporter complement(4284359..4285600) Alicycliphilus denitrificans BC 10106186 YP_004128691.1 CDS Alide_4100 NC_014910.1 4285692 4287620 R PFAM: K potassium transporter; KEGG: dia:Dtpsy_3258 K potassium transporter; potassium transporter complement(4285692..4287620) Alicycliphilus denitrificans BC 10106187 YP_004128692.1 CDS Alide_4101 NC_014910.1 4287657 4289000 R KEGG: dia:Dtpsy_3259 glutamate/cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; glutamate/cysteine ligase complement(4287657..4289000) Alicycliphilus denitrificans BC 10106188 YP_004128693.1 CDS Alide_4102 NC_014910.1 4289020 4290486 R PFAM: cation transporter; KEGG: dac:Daci_5998 cation transporter; cation transporter complement(4289020..4290486) Alicycliphilus denitrificans BC 10106189 YP_004128694.1 CDS Alide_4103 NC_014910.1 4290488 4291963 R PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dia:Dtpsy_3261 potassium transporter peripheral membrane component; TrkA domain-containing protein complement(4290488..4291963) Alicycliphilus denitrificans BC 10106190 YP_004128695.1 CDS Alide_4104 NC_014910.1 4292024 4293358 R TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: ajs:Ajs_3913 gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; gamma-glutamyl phosphate reductase complement(4292024..4293358) Alicycliphilus denitrificans BC 10106191 YP_004128696.1 CDS Alide_4105 NC_014910.1 4293376 4293711 R KEGG: pde:Pden_0614 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; s-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(4293376..4293711) Alicycliphilus denitrificans BC 10106192 YP_004128697.1 CDS Alide_4106 NC_014910.1 4293653 4294714 R KEGG: ank:AnaeK_1753 RimK domain protein ATP-grasp; rimk domain-containing protein complement(4293653..4294714) Alicycliphilus denitrificans BC 10106193 YP_004128698.1 CDS Alide_4107 NC_014910.1 4294711 4296054 R KEGG: cph:Cpha266_0056 peptidase M12A, astacin; PFAM: peptidase M12A astacin; SMART: peptidase metallopeptidase; peptidase m12a astacin complement(4294711..4296054) Alicycliphilus denitrificans BC 10106194 YP_004128699.1 CDS Alide_4108 NC_014910.1 4296367 4296651 D KEGG: dia:Dtpsy_3263 hypothetical protein; hypothetical protein 4296367..4296651 Alicycliphilus denitrificans BC 10106195 YP_004128700.1 CDS Alide_4109 NC_014910.1 4296853 4297932 R KEGG: dia:Dtpsy_3264 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta complement(4296853..4297932) Alicycliphilus denitrificans BC 10106196 YP_004128701.1 CDS Alide_4110 NC_014910.1 4297953 4298465 R PFAM: Rare lipoprotein B; KEGG: dia:Dtpsy_3265 rare lipoprotein B; rare lipoprotein b complement(4297953..4298465) Alicycliphilus denitrificans BC 10106197 YP_004128702.1 CDS Alide_4111 NC_014910.1 4298465 4301170 R KEGG: ajs:Ajs_3917 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(4298465..4301170) Alicycliphilus denitrificans BC 10106198 YP_004128703.1 CDS Alide_4112 NC_014910.1 4301327 4302571 D PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_3919 MscS mechanosensitive ion channel; mscs mechanosensitive ion channel 4301327..4302571 Alicycliphilus denitrificans BC 10106199 YP_004128704.1 CDS Alide_4113 NC_014910.1 4302876 4304402 D PFAM: Aldehyde Dehydrogenase; KEGG: bmj:BMULJ_03133 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 4302876..4304402 Alicycliphilus denitrificans BC 10106200 YP_004128705.1 CDS Alide_4115 NC_014910.1 4305316 4307289 R KEGG: pna:Pnap_0735 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein complement(4305316..4307289) Alicycliphilus denitrificans BC 10106202 YP_004128706.1 CDS Alide_4116 NC_014910.1 4307657 4308139 D KEGG: pna:Pnap_0736 cytochrome c-type protein; cytochrome c-type protein 4307657..4308139 Alicycliphilus denitrificans BC 10106203 YP_004128707.1 CDS Alide_4117 NC_014910.1 4308554 4311130 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; GAF domain protein; EAL domain protein; KEGG: bxe:Bxe_C0015 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; diguanylate cyclase 4308554..4311130 Alicycliphilus denitrificans BC 10106204 YP_004128708.1 CDS Alide_4118 NC_014910.1 4311137 4311556 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_3920 biopolymer transport protein ExbD/TolR; biopolymer transport protein exbd/tolr complement(4311137..4311556) Alicycliphilus denitrificans BC 10106205 YP_004128709.1 CDS Alide_4119 NC_014910.1 4311563 4312216 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_3269 MotA/TolQ/ExbB proton channel; mota/tolq/exbb proton channel complement(4311563..4312216) Alicycliphilus denitrificans BC 10106206 YP_004128710.1 CDS Alide_4120 NC_014910.1 4312224 4313045 R TIGRFAM: dihydrodipicolinate reductase; KEGG: ajs:Ajs_3922 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(4312224..4313045) Alicycliphilus denitrificans BC 10106207 YP_004128711.1 CDS Alide_4121 NC_014910.1 4313100 4313654 R PFAM: SmpA/OmlA domain-containing protein; KEGG: dia:Dtpsy_3271 SmpA/OmlA domain protein; smpa/omla domain-containing protein complement(4313100..4313654) Alicycliphilus denitrificans BC 10106208 YP_004128712.1 CDS Alide_4122 NC_014910.1 4313754 4314173 D PFAM: ferric-uptake regulator; KEGG: dia:Dtpsy_3272 ferric uptake regulator, Fur family; ferric-uptake regulator 4313754..4314173 Alicycliphilus denitrificans BC 10106209 YP_004128713.1 CDS Alide_4123 NC_014910.1 4314181 4315134 R PFAM: HPr serine kinase domain-containing protein; KEGG: dia:Dtpsy_3273 HPr kinase/phosphorylase; hpr serine kinase domain-containing protein complement(4314181..4315134) Alicycliphilus denitrificans BC 10106210 YP_004128714.1 CDS Alide_4124 NC_014910.1 4315428 4315895 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ajs:Ajs_3926 PTS IIA-like nitrogen-regulatory protein PtsN; phosphoenolpyruvate-dependent sugar phosphotransferase system eiia 2 complement(4315428..4315895) Alicycliphilus denitrificans BC 10106211 YP_004128715.1 CDS Alide_4125 NC_014910.1 4316036 4316383 R KEGG: dia:Dtpsy_3275 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; ribosomal subunit interface protein complement(4316036..4316383) Alicycliphilus denitrificans BC 10106212 YP_004128716.1 CDS Alide_4126 NC_014910.1 4316706 4317626 D TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: dia:Dtpsy_3276 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 4316706..4317626 Alicycliphilus denitrificans BC 10106213 YP_004128717.1 CDS Alide_4127 NC_014910.1 4317676 4318584 R KEGG: dia:Dtpsy_3279 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; thioredoxin complement(4317676..4318584) Alicycliphilus denitrificans BC 10106214 YP_004128718.1 CDS Alide_4128 NC_014910.1 4318726 4319223 D TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: dia:Dtpsy_3282 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 4318726..4319223 Alicycliphilus denitrificans BC 10106215 YP_004128719.1 CDS Alide_4129 NC_014910.1 4319220 4320389 D TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: dia:Dtpsy_3283 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase, atpase subunit 4319220..4320389 Alicycliphilus denitrificans BC 10106216 YP_004128720.1 CDS Alide_4130 NC_014910.1 4320395 4321393 D KEGG: ajs:Ajs_3936 translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain-containing protein; sua5/ycio/yrdc/ywlc family protein 4320395..4321393 Alicycliphilus denitrificans BC 10106217 YP_004128721.1 CDS Alide_4131 NC_014910.1 4321457 4322413 D KEGG: ajs:Ajs_3937 lipase; lipase 4321457..4322413 Alicycliphilus denitrificans BC 10106218 YP_004128722.1 CDS Alide_4132 NC_014910.1 4322571 4323296 R KEGG: aav:Aave_2743 hypothetical protein; hypothetical protein complement(4322571..4323296) Alicycliphilus denitrificans BC 10106219 YP_004128723.1 CDS Alide_4133 NC_014910.1 4323320 4324843 R KEGG: app:CAP2UW1_2151 ATPase; ATPase complement(4323320..4324843) Alicycliphilus denitrificans BC 10106220 YP_004128724.1 CDS Alide_4134 NC_014910.1 4324957 4326534 R KEGG: pna:Pnap_4127 hypothetical protein; hypothetical protein complement(4324957..4326534) Alicycliphilus denitrificans BC 10106221 YP_004128725.1 CDS Alide_4135 NC_014910.1 4326726 4327589 D KEGG: bbt:BBta_1239 hypothetical protein; hypothetical protein 4326726..4327589 Alicycliphilus denitrificans BC 10106222 YP_004128726.1 CDS Alide_4136 NC_014910.1 4327555 4327827 R KEGG: bvi:Bcep1808_0010 hypothetical protein; hypothetical protein complement(4327555..4327827) Alicycliphilus denitrificans BC 10106223 YP_004128727.1 CDS Alide_4137 NC_014910.1 4327967 4328263 D KEGG: ppg:PputGB1_3382 hypothetical protein; hypothetical protein 4327967..4328263 Alicycliphilus denitrificans BC 10106224 YP_004128728.1 CDS Alide_4138 NC_014910.1 4328257 4328979 D KEGG: rpf:Rpic12D_2698 hypothetical protein; hypothetical protein 4328257..4328979 Alicycliphilus denitrificans BC 10106225 YP_004128729.1 CDS Alide_4139 NC_014910.1 4328976 4330280 D KEGG: xac:XAC3233 transposase; transposase 4328976..4330280 Alicycliphilus denitrificans BC 10106226 YP_004128730.1 CDS Alide_4140 NC_014910.1 4330411 4331499 D KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein; transposase is4 family protein 4330411..4331499 Alicycliphilus denitrificans BC 10106227 YP_004128731.1 CDS Alide_4142 NC_014910.1 4331822 4333528 R KEGG: aba:Acid345_1066 hypothetical protein; hypothetical protein complement(4331822..4333528) Alicycliphilus denitrificans BC 10106229 YP_004128732.1 CDS Alide_4143 NC_014910.1 4333599 4334132 R KEGG: xac:XAC3234 hypothetical protein; hypothetical protein complement(4333599..4334132) Alicycliphilus denitrificans BC 10106230 YP_004128733.1 CDS Alide_4144 NC_014910.1 4334243 4334938 R PFAM: OmpW family protein; KEGG: pna:Pnap_1827 OmpW family protein; ompw family protein complement(4334243..4334938) Alicycliphilus denitrificans BC 10106231 YP_004128734.1 CDS Alide_4145 NC_014910.1 4334967 4336526 R KEGG: pna:Pnap_1828 hypothetical protein; hypothetical protein complement(4334967..4336526) Alicycliphilus denitrificans BC 10106232 YP_004128735.1 CDS Alide_4146 NC_014910.1 4336629 4338101 R TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; KEGG: dia:Dtpsy_3288 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase complement(4336629..4338101) Alicycliphilus denitrificans BC 10106233 YP_004128736.1 CDS Alide_4147 NC_014910.1 4338177 4338905 D PFAM: peptidase M22 glycoprotease; KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease; peptidase m22 glycoprotease 4338177..4338905 Alicycliphilus denitrificans BC 10106234 YP_004128737.1 CDS Alide_4148 NC_014910.1 4338902 4339378 D KEGG: dia:Dtpsy_3290 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 4338902..4339378 Alicycliphilus denitrificans BC 10106235 YP_004128738.1 CDS Alide_4149 NC_014910.1 4339524 4340114 D KEGG: dia:Dtpsy_3291 phage SPO1 DNA polymerase-related protein; phage spo1 DNA polymerase-like protein 4339524..4340114 Alicycliphilus denitrificans BC 10106236 YP_004128739.1 CDS Alide_4150 NC_014910.1 4340285 4341271 D KEGG: dac:Daci_0973 magnesium and cobalt transport protein CorA; TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; magnesium and cobalt transport protein cora 4340285..4341271 Alicycliphilus denitrificans BC 10106237 YP_004128740.1 CDS Alide_4151 NC_014910.1 4341566 4341775 D KEGG: dre:554779 odorant receptor, family C, subfamily 103, member 2; hypothetical protein 4341566..4341775 Alicycliphilus denitrificans BC 10106238 YP_004128741.1 CDS Alide_4152 NC_014910.1 4342075 4342257 D KEGG: rle:pRL100018 NTP-binding transposase-related protein; hypothetical protein 4342075..4342257 Alicycliphilus denitrificans BC 10106239 YP_004128742.1 CDS Alide_4153 NC_014910.1 4342326 4343093 R TIGRFAM: MTA/SAH nucleosidase; KEGG: dia:Dtpsy_3298 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1; mta/sah nucleosidase complement(4342326..4343093) Alicycliphilus denitrificans BC 10106240 YP_004128743.1 CDS Alide_4154 NC_014910.1 4343153 4344829 R PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(4343153..4344829) Alicycliphilus denitrificans BC 10106241 YP_004128744.1 CDS Alide_4155 NC_014910.1 4344920 4346332 R KEGG: ctt:CtCNB1_0258 NAD(P) transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase beta subunit; nad(p)(+) transhydrogenase (ab-specific) complement(4344920..4346332) Alicycliphilus denitrificans BC 10106242 YP_004128745.1 CDS Alide_4156 NC_014910.1 4346369 4347979 R KEGG: bpt:Bpet4170 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: alanine dehydrogenase/PNT domain protein; NAD(P) transhydrogenase subunit alpha complement(4346369..4347979) Alicycliphilus denitrificans BC 10106243 YP_004128746.1 CDS Alide_4157 NC_014910.1 4348034 4348753 R KEGG: dia:Dtpsy_3302 hypothetical protein; hypothetical protein complement(4348034..4348753) Alicycliphilus denitrificans BC 10106244 YP_004128747.1 CDS Alide_4158 NC_014910.1 4348877 4349941 R TIGRFAM: fructose-bisphosphate aldolase, class II, Calvin cycle subtype; ketose-bisphosphate aldolase; KEGG: dia:Dtpsy_3304 fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase, class ii, calvin cycle subtype complement(4348877..4349941) Alicycliphilus denitrificans BC 10106245 YP_004128748.1 CDS Alide_4159 NC_014910.1 4350079 4351521 R TIGRFAM: pyruvate kinase; KEGG: dia:Dtpsy_3305 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(4350079..4351521) Alicycliphilus denitrificans BC 10106246 YP_004128749.1 CDS Alide_4160 NC_014910.1 4351597 4352979 R PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: dia:Dtpsy_3306 peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; peptidase m24 complement(4351597..4352979) Alicycliphilus denitrificans BC 10106247 YP_004128750.1 CDS Alide_4161 NC_014910.1 4353307 4354086 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_0802 enoyl-CoA hydratase; enoyl-CoA hydratase complement(4353307..4354086) Alicycliphilus denitrificans BC 10106248 YP_004128751.1 CDS Alide_4162 NC_014910.1 4354086 4355057 R KEGG: dac:Daci_0801 hypothetical protein; hypothetical protein complement(4354086..4355057) Alicycliphilus denitrificans BC 10106249 YP_004128752.1 CDS Alide_4163 NC_014910.1 4355058 4356236 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_0800 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f complement(4355058..4356236) Alicycliphilus denitrificans BC 10106250 YP_004128753.1 CDS Alide_4164 NC_014910.1 4356247 4357410 R KEGG: rme:Rmet_5111 thiolase; thiolase complement(4356247..4357410) Alicycliphilus denitrificans BC 10106251 YP_004128754.1 CDS Alide_4165 NC_014910.1 4357407 4357808 R PFAM: protein of unknown function DUF35; KEGG: rme:Rmet_5112 hypothetical protein; hypothetical protein complement(4357407..4357808) Alicycliphilus denitrificans BC 10106252 YP_004128755.1 CDS Alide_4166 NC_014910.1 4357813 4358820 R KEGG: rme:Rmet_5113 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein complement(4357813..4358820) Alicycliphilus denitrificans BC 10106253 YP_004128756.1 CDS Alide_4167 NC_014910.1 4358980 4359888 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_5106 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4358980..4359888) Alicycliphilus denitrificans BC 10106254 YP_004128757.1 CDS Alide_4168 NC_014910.1 4359894 4360670 R PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: ajs:Ajs_3958 nucleotidyl transferase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase complement(4359894..4360670) Alicycliphilus denitrificans BC 10106255 YP_004128758.1 CDS Alide_4169 NC_014910.1 4360745 4362781 D manually curated; TIGRFAM: transketolase; KEGG: dia:Dtpsy_3309 transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; transketolase 4360745..4362781 Alicycliphilus denitrificans BC 10106256 YP_004128759.1 CDS Alide_4170 NC_014910.1 4362813 4363814 D TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ajs:Ajs_3960 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type i 4362813..4363814 Alicycliphilus denitrificans BC 10106257 YP_004128760.1 CDS Alide_4171 NC_014910.1 4363976 4364320 R KEGG: dia:Dtpsy_3312 ribosomal subunit interface protein, putative; ribosomal subunit interface protein complement(4363976..4364320) Alicycliphilus denitrificans BC 10106258 YP_004128761.1 CDS Alide_4172 NC_014910.1 4364494 4365381 D PFAM: peptidase C26; KEGG: dia:Dtpsy_3313 peptidase C26; peptidase c26 4364494..4365381 Alicycliphilus denitrificans BC 10106259 YP_004128762.1 CDS Alide_4173 NC_014910.1 4365382 4366266 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2148 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4365382..4366266) Alicycliphilus denitrificans BC 10106260 YP_004128763.1 CDS Alide_4174 NC_014910.1 4366387 4367277 D PFAM: amidohydrolase 2; KEGG: pol:Bpro_2147 amidohydrolase 2; amidohydrolase 4366387..4367277 Alicycliphilus denitrificans BC 10106261 YP_004128764.1 CDS Alide_4175 NC_014910.1 4367320 4368150 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_2146 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 4367320..4368150 Alicycliphilus denitrificans BC 10106262 YP_004128765.1 CDS Alide_4176 NC_014910.1 4368207 4369178 D KEGG: pol:Bpro_2145 hypothetical protein; hypothetical protein 4368207..4369178 Alicycliphilus denitrificans BC 10106263 YP_004128766.1 CDS Alide_4177 NC_014910.1 4369202 4369723 D PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_2144 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 4369202..4369723 Alicycliphilus denitrificans BC 10106264 YP_004128767.1 CDS Alide_4178 NC_014910.1 4369720 4370433 D KEGG: pol:Bpro_2143 hypothetical protein; hypothetical protein 4369720..4370433 Alicycliphilus denitrificans BC 10106265 YP_004128768.1 CDS Alide_4179 NC_014910.1 4370458 4371672 R KEGG: dac:Daci_2267 PepSY-associated TM helix domain-containing protein; pepsy-associated tm helix domain-containing protein complement(4370458..4371672) Alicycliphilus denitrificans BC 10106266 YP_004128769.1 CDS Alide_4180 NC_014910.1 4371672 4373879 R KEGG: ctt:CtCNB1_3496 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; tonb-dependent siderophore receptor complement(4371672..4373879) Alicycliphilus denitrificans BC 10106267 YP_004128770.1 CDS Alide_4181 NC_014910.1 4374020 4374493 R KEGG: dia:Dtpsy_3314 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, fkbp-type complement(4374020..4374493) Alicycliphilus denitrificans BC 10106268 YP_004128771.1 CDS Alide_4182 NC_014910.1 4374548 4375519 R KEGG: ctt:CtCNB1_4653 TctC; hypothetical protein complement(4374548..4375519) Alicycliphilus denitrificans BC 10106269 YP_004128772.1 CDS Alide_4183 NC_014910.1 4375551 4375904 R KEGG: ctt:CtCNB1_4654 hypothetical protein; hypothetical protein complement(4375551..4375904) Alicycliphilus denitrificans BC 10106270 YP_004128773.1 CDS Alide_4184 NC_014910.1 4375923 4377284 R PFAM: protein of unknown function DUF1446; KEGG: ctt:CtCNB1_4655 NAD-dependent aldehyde dehydrogenase; hypothetical protein complement(4375923..4377284) Alicycliphilus denitrificans BC 10106271 YP_004128774.1 CDS Alide_4185 NC_014910.1 4377393 4378283 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_4656 transcriptional regulator, LysR family; LysR family transcriptional regulator 4377393..4378283 Alicycliphilus denitrificans BC 10106272 YP_004128775.1 CDS Alide_4186 NC_014910.1 4378383 4378859 R PFAM: transcription activator effector binding; KEGG: aav:Aave_4607 transcription activator, effector binding; transcription activator effector binding protein complement(4378383..4378859) Alicycliphilus denitrificans BC 10106273 YP_004128776.1 CDS Alide_4187 NC_014910.1 4379161 4380216 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3318 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(4379161..4380216) Alicycliphilus denitrificans BC 10106274 YP_004128777.1 CDS Alide_4188 NC_014910.1 4380313 4380936 R KEGG: dia:Dtpsy_3319 hypothetical protein; hypothetical protein complement(4380313..4380936) Alicycliphilus denitrificans BC 10106275 YP_004128778.1 CDS Alide_4189 NC_014910.1 4380964 4381710 R PFAM: DTW domain containing protein; KEGG: ajs:Ajs_3970 DTW domain-containing protein; dtw domain-containing protein complement(4380964..4381710) Alicycliphilus denitrificans BC 10106276 YP_004128779.1 CDS Alide_4190 NC_014910.1 4381888 4382730 D KEGG: ajs:Ajs_3971 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 4381888..4382730 Alicycliphilus denitrificans BC 10106277 YP_004128780.1 CDS Alide_4191 NC_014910.1 4382727 4383878 D KEGG: ajs:Ajs_3972 thiolase; thiolase 4382727..4383878 Alicycliphilus denitrificans BC 10106278 YP_004128781.1 CDS Alide_4192 NC_014910.1 4383881 4384240 D PFAM: protein of unknown function DUF35; KEGG: ajs:Ajs_3973 hypothetical protein; hypothetical protein 4383881..4384240 Alicycliphilus denitrificans BC 10106279 YP_004128782.1 CDS Alide_4193 NC_014910.1 4384263 4385240 D KEGG: dia:Dtpsy_3324 hypothetical protein; hypothetical protein 4384263..4385240 Alicycliphilus denitrificans BC 10106280 YP_004128783.1 CDS Alide_4194 NC_014910.1 4385249 4387336 D PFAM: CoA-binding domain protein; ATP-grasp domain protein; KEGG: dia:Dtpsy_3325 CoA-binding domain protein; CoA-binding protein 4385249..4387336 Alicycliphilus denitrificans BC 10106281 YP_004128784.1 CDS Alide_4195 NC_014910.1 4387385 4388083 R PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_3976 glutathione S-transferase domain-containing protein; glutathione s-transferase domain-containing protein complement(4387385..4388083) Alicycliphilus denitrificans BC 10106282 YP_004128785.1 CDS Alide_4196 NC_014910.1 4388086 4388847 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_3977 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase sdr complement(4388086..4388847) Alicycliphilus denitrificans BC 10106283 YP_004128786.1 CDS Alide_4197 NC_014910.1 4388875 4389276 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_3978 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(4388875..4389276) Alicycliphilus denitrificans BC 10106284 YP_004128787.1 CDS Alide_4198 NC_014910.1 4389321 4392242 R TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; SWIB/MDM2 domain-containing protein; KEGG: ajs:Ajs_3990 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; SWIB domain; DNA topoisomerase iii complement(4389321..4392242) Alicycliphilus denitrificans BC 10106285 YP_004128788.1 CDS Alide_4199 NC_014910.1 4392343 4392894 D KEGG: dia:Dtpsy_3340 nuclear protein SET; PFAM: nuclear protein SET; SMART: nuclear protein SET; nuclear protein set 4392343..4392894 Alicycliphilus denitrificans BC 10106286 YP_004128789.1 CDS Alide_4200 NC_014910.1 4392891 4393721 D KEGG: dia:Dtpsy_3341 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; biotin--acetyl-CoA-carboxylase ligase 4392891..4393721 Alicycliphilus denitrificans BC 10106287 YP_004128790.1 CDS Alide_4201 NC_014910.1 4393878 4394549 D PFAM: Sporulation domain-containing protein; KEGG: dia:Dtpsy_3342 sporulation domain protein; sporulation domain-containing protein 4393878..4394549 Alicycliphilus denitrificans BC 10106288 YP_004128791.1 CDS Alide_4202 NC_014910.1 4394557 4395594 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_2134 alcohol dehydrogenase; alcohol dehydrogenase complement(4394557..4395594) Alicycliphilus denitrificans BC 10106289 YP_004128792.1 CDS Alide_4203 NC_014910.1 4395591 4396046 R PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_B4755 MaoC-like dehydratase; MaoC domain-containing protein complement(4395591..4396046) Alicycliphilus denitrificans BC 10106290 YP_004128793.1 CDS Alide_4204 NC_014910.1 4396033 4396503 R KEGG: reu:Reut_B4756 hypothetical protein; hypothetical protein complement(4396033..4396503) Alicycliphilus denitrificans BC 10106291 YP_004128794.1 CDS Alide_4205 NC_014910.1 4396514 4397710 R PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2466 extracellular ligand-binding receptor; ABC transporter substrate-binding protein complement(4396514..4397710) Alicycliphilus denitrificans BC 10106292 YP_004128795.1 CDS Alide_4206 NC_014910.1 4397770 4399752 R PFAM: AMP-dependent synthetase and ligase; KEGG: bur:Bcep18194_C7155 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(4397770..4399752) Alicycliphilus denitrificans BC 10106293 YP_004128796.1 CDS Alide_4207 NC_014910.1 4399884 4400390 D KEGG: vei:Veis_4103 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; regulatory protein marr 4399884..4400390 Alicycliphilus denitrificans BC 10106294 YP_004128797.1 CDS Alide_4208 NC_014910.1 4400472 4400843 D KEGG: afw:Anae109_4130 hypothetical protein; hypothetical protein 4400472..4400843 Alicycliphilus denitrificans BC 10106295 YP_004128798.1 CDS Alide_4209 NC_014910.1 4401111 4401809 D PFAM: RES domain protein; KEGG: azo:azo2874 hypothetical protein; res domain-containing protein 4401111..4401809 Alicycliphilus denitrificans BC 10106296 YP_004128799.1 CDS Alide_4210 NC_014910.1 4401820 4402893 R PFAM: NAD/NADP octopine/nopaline dehydrogenase; Ketopantoate reductase ApbA/PanE domain protein; KEGG: vap:Vapar_0420 NAD/NADP octopine/nopaline dehydrogenase; nad/nadp octopine/nopaline dehydrogenase complement(4401820..4402893) Alicycliphilus denitrificans BC 10106297 YP_004128800.1 CDS Alide_4211 NC_014910.1 4402890 4403918 R KEGG: vap:Vapar_0421 hypothetical protein; hypothetical protein complement(4402890..4403918) Alicycliphilus denitrificans BC 10106298 YP_004128801.1 CDS Alide_4212 NC_014910.1 4403950 4405395 R KEGG: dia:Dtpsy_3348 histidine kinase; PFAM: Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; two-component sensor kinase domain-containing protein complement(4403950..4405395) Alicycliphilus denitrificans BC 10106299 YP_004128802.1 CDS Alide_4213 NC_014910.1 4405461 4406135 R KEGG: ajs:Ajs_3999 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver complement(4405461..4406135) Alicycliphilus denitrificans BC 10106300 YP_004128803.1 CDS Alide_4214 NC_014910.1 4406263 4407393 R KEGG: bcj:BCAL0446 2-aminoethylphosphonate--pyruvate transaminase; TIGRFAM: 2-aminoethylphosphonate/pyruvate transaminase; 2-aminoethylphosphonate aminotransferase; PFAM: aminotransferase class V; 2-aminoethylphosphonate--pyruvate transaminase complement(4406263..4407393) Alicycliphilus denitrificans BC 10106301 YP_004128804.1 CDS Alide_4215 NC_014910.1 4407428 4409161 R KEGG: reu:Reut_B5872 binding-protein dependent transport system inner membrane protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; 2-aminoethylphosphonate abc transport system, permease protein complement(4407428..4409161) Alicycliphilus denitrificans BC 10106302 YP_004128805.1 CDS Alide_4216 NC_014910.1 4409158 4410291 R TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding protein component; PFAM: ABC transporter related; KEGG: reu:Reut_B5873 ABC transporter related; SMART: AAA ATPase; 2-aminoethylphosphonate ABC transporter ATP-binding protein complement(4409158..4410291) Alicycliphilus denitrificans BC 10106303 YP_004128806.1 CDS Alide_4217 NC_014910.1 4410369 4411406 R KEGG: reu:Reut_B5874 extracellular solute-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: extracellular solute-binding protein family 1; 2-aminoethylphosphonate ABC transporter substrate-binding protein complement(4410369..4411406) Alicycliphilus denitrificans BC 10106304 YP_004128807.1 CDS Alide_4218 NC_014910.1 4411549 4412277 D TIGRFAM: phosphonate utilization associated transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; KEGG: reu:Reut_B5875 GntR family transcriptional regulator; SMART: regulatory protein GntR HTH; phosphonate utilization associated transcriptional regulator 4411549..4412277 Alicycliphilus denitrificans BC 10106305 YP_004128808.1 CDS Alide_4219 NC_014910.1 4412279 4413514 D KEGG: reu:Reut_B5876 type I phosphodiesterase/nucleotide pyrophosphatase; TIGRFAM: phosphonoacetate hydrolase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; phosphonoacetate hydrolase 4412279..4413514 Alicycliphilus denitrificans BC 10106306 YP_004128809.1 CDS Alide_4220 NC_014910.1 4413545 4414993 D KEGG: cti:RALTA_B0682 NAD+ dependent acetaldehyde dehydrogenase; TIGRFAM: phosphonoacetaldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; phosphonoacetaldehyde dehydrogenase 4413545..4414993 Alicycliphilus denitrificans BC 10106307 YP_004128810.1 CDS Alide_4221 NC_014910.1 4414999 4415538 D TIGRFAM: phosphonate degradation operons associated HDIG domain protein; KEGG: vei:Veis_1186 HD phosphohydrolase-like protein; phosphonate degradation operons associated hdig domain-containing protein 4414999..4415538 Alicycliphilus denitrificans BC 10106308 YP_004128811.1 CDS Alide_4222 NC_014910.1 4415636 4417024 D KEGG: bcm:Bcenmc03_3163 aminophosphonate oxidoreductase; TIGRFAM: aminophosphonate oxidoreductase; PFAM: FAD dependent oxidoreductase; aminophosphonate oxidoreductase 4415636..4417024 Alicycliphilus denitrificans BC 10106309 YP_004128812.1 CDS Alide_4223 NC_014910.1 4417163 4418239 R TIGRFAM: alanine racemase; KEGG: tmz:Tmz1t_3995 alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(4417163..4418239) Alicycliphilus denitrificans BC 10106310 YP_004128813.1 CDS Alide_4224 NC_014910.1 4418236 4419546 R PFAM: FAD dependent oxidoreductase; KEGG: dac:Daci_3117 D-amino acid dehydrogenase small subunit; FAD-dependent oxidoreductase complement(4418236..4419546) Alicycliphilus denitrificans BC 10106311 YP_004128814.1 CDS Alide_4225 NC_014910.1 4419673 4420185 D KEGG: vap:Vapar_3966 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein 4419673..4420185 Alicycliphilus denitrificans BC 10106312 YP_004128815.1 CDS Alide_4226 NC_014910.1 4420170 4420649 R PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 MarR family transcriptional regulator; regulatory protein marr complement(4420170..4420649) Alicycliphilus denitrificans BC 10106313 YP_004128816.1 CDS Alide_4227 NC_014910.1 4420796 4421905 D TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: dia:Dtpsy_3351 RecA protein; SMART: AAA ATPase; reca protein 4420796..4421905 Alicycliphilus denitrificans BC 10106314 YP_004128817.1 CDS Alide_4228 NC_014910.1 4421986 4422444 D KEGG: dia:Dtpsy_3352 regulatory protein RecX; regulatory protein recx 4421986..4422444 Alicycliphilus denitrificans BC 10106315 YP_004128818.1 CDS Alide_4229 NC_014910.1 4422500 4424794 R PFAM: protein of unknown function DUF1631; KEGG: dia:Dtpsy_3353 hypothetical protein; hypothetical protein complement(4422500..4424794) Alicycliphilus denitrificans BC 10106316 YP_004128819.1 CDS Alide_4230 NC_014910.1 4424851 4425804 R KEGG: dia:Dtpsy_3354 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein secf complement(4424851..4425804) Alicycliphilus denitrificans BC 10106317 YP_004128820.1 CDS Alide_4231 NC_014910.1 4425816 4427711 R KEGG: dia:Dtpsy_3355 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein secd complement(4425816..4427711) Alicycliphilus denitrificans BC 10106318 YP_004128821.1 CDS Alide_4232 NC_014910.1 4427794 4428126 R KEGG: dia:Dtpsy_3356 preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; preprotein translocase, yajc subunit complement(4427794..4428126) Alicycliphilus denitrificans BC 10106319 YP_004128822.1 CDS Alide_4233 NC_014910.1 4428330 4431947 R PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: ajs:Ajs_4008 indolepyruvate ferredoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase, catalytic domain-containing protein complement(4428330..4431947) Alicycliphilus denitrificans BC 10106320 YP_004128823.1 CDS Alide_4234 NC_014910.1 4432127 4432600 D KEGG: dia:Dtpsy_3359 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein 4432127..4432600 Alicycliphilus denitrificans BC 10106321 YP_004128824.1 CDS Alide_4235 NC_014910.1 4432742 4434451 D PFAM: protein of unknown function DUF894 DitE; KEGG: dia:Dtpsy_3362 protein of unknown function DUF894 DitE; hypothetical protein 4432742..4434451 Alicycliphilus denitrificans BC 10106322 YP_004128825.1 CDS Alide_4236 NC_014910.1 4434560 4435663 R PFAM: MltA domain protein; 3D domain-containing protein; KEGG: dia:Dtpsy_3363 MltA domain protein; MltA domain-containing protein complement(4434560..4435663) Alicycliphilus denitrificans BC 10106323 YP_004128826.1 CDS Alide_4237 NC_014910.1 4435692 4435814 D KEGG: adg:Adeg_1325 hypothetical protein; hypothetical protein 4435692..4435814 Alicycliphilus denitrificans BC 10106324 YP_004128827.1 CDS Alide_4238 NC_014910.1 4435942 4436586 D PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_3364 OmpA/MotB domain protein; ompa/motb domain-containing protein 4435942..4436586 Alicycliphilus denitrificans BC 10106325 YP_004128828.1 CDS Alide_4239 NC_014910.1 4436644 4437279 R KEGG: ajs:Ajs_4015 response regulator receiver protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver complement(4436644..4437279) Alicycliphilus denitrificans BC 10106326 YP_004128829.1 CDS Alide_4240 NC_014910.1 4437279 4439372 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dia:Dtpsy_3366 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; pas sensor protein complement(4437279..4439372) Alicycliphilus denitrificans BC 10106327 YP_004128830.1 CDS Alide_4241 NC_014910.1 4439396 4440211 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dia:Dtpsy_3367 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein n-acyltransferase complement(4439396..4440211) Alicycliphilus denitrificans BC 10106328 YP_004128831.1 CDS Alide_4242 NC_014910.1 4440208 4444278 R KEGG: dia:Dtpsy_3368 hypothetical protein; hypothetical protein complement(4440208..4444278) Alicycliphilus denitrificans BC 10106329 YP_004128832.1 CDS Alide_4243 NC_014910.1 4444372 4447119 D KEGG: dia:Dtpsy_3369 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: GlnD PII-uridylyltransferase; glutamate-ammonia ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 4444372..4447119 Alicycliphilus denitrificans BC 10106330 YP_004128833.1 CDS Alide_4244 NC_014910.1 4447348 4448490 D KEGG: dia:Dtpsy_3372 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 4447348..4448490 Alicycliphilus denitrificans BC 10106331 YP_004128834.1 CDS Alide_4245 NC_014910.1 4448503 4451562 D PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_4023 acriflavin resistance protein; acriflavin resistance protein 4448503..4451562 Alicycliphilus denitrificans BC 10106332 YP_004128835.1 CDS Alide_4246 NC_014910.1 4451956 4452570 R PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_3375 glutathione S-transferase domain protein; glutathione s-transferase domain-containing protein complement(4451956..4452570) Alicycliphilus denitrificans BC 10106333 YP_004128836.1 CDS Alide_4247 NC_014910.1 4452683 4454062 D KEGG: dia:Dtpsy_3376 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain-containing protein; fumarate lyase; adenylosuccinate lyase 4452683..4454062 Alicycliphilus denitrificans BC 10106334 YP_004128837.1 CDS Alide_4248 NC_014910.1 4454132 4454692 D PFAM: YaeQ family protein; KEGG: dia:Dtpsy_3377 YaeQ family protein; yaeq family protein 4454132..4454692 Alicycliphilus denitrificans BC 10106335 YP_004128838.1 CDS Alide_4249 NC_014910.1 4454963 4455268 R KEGG: dia:Dtpsy_3378 hypothetical protein; hypothetical protein complement(4454963..4455268) Alicycliphilus denitrificans BC 10106336 YP_004128839.1 CDS Alide_4250 NC_014910.1 4455309 4455713 R PFAM: protein of unknown function DUF1289; KEGG: dia:Dtpsy_3379 protein of unknown function DUF1289; hypothetical protein complement(4455309..4455713) Alicycliphilus denitrificans BC 10106337 YP_004128840.1 CDS Alide_4251 NC_014910.1 4456121 4456858 D PFAM: Integral membrane protein TerC; KEGG: ajs:Ajs_4030 integral membrane protein TerC; integral membrane protein TerC 4456121..4456858 Alicycliphilus denitrificans BC 10106338 YP_004128841.1 CDS Alide_4252 NC_014910.1 4456893 4457363 D KEGG: ajs:Ajs_4031 hypothetical protein; hypothetical protein 4456893..4457363 Alicycliphilus denitrificans BC 10106339 YP_004128842.1 CDS Alide_4253 NC_014910.1 4457365 4458285 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_4070 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4457365..4458285) Alicycliphilus denitrificans BC 10106340 YP_004128843.1 CDS Alide_4254 NC_014910.1 4458325 4458699 R KEGG: dia:Dtpsy_2869 hypothetical protein; hypothetical protein complement(4458325..4458699) Alicycliphilus denitrificans BC 10106341 YP_004128844.1 CDS Alide_4256 NC_014910.1 4459801 4460157 D PFAM: membrane protein of unknown function; KEGG: dia:Dtpsy_3382 membrane protein of unknown function; hypothetical protein 4459801..4460157 Alicycliphilus denitrificans BC 10106343 YP_004128845.1 CDS Alide_4257 NC_014910.1 4460125 4461651 R PFAM: peptidase M48 Ste24p; KEGG: dia:Dtpsy_3383 peptidase M48 Ste24p; peptidase m48 ste24p complement(4460125..4461651) Alicycliphilus denitrificans BC 10106344 YP_004128846.1 CDS Alide_4258 NC_014910.1 4461801 4462286 D KEGG: ajs:Ajs_4034 GTP cyclohydrolase subunit MoaC; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC; molybdenum cofactor biosynthesis protein c 4461801..4462286 Alicycliphilus denitrificans BC 10106345 YP_004128847.1 CDS Alide_4259 NC_014910.1 4462424 4463215 R KEGG: pna:Pnap_3943 FimB; fimbrial assembly protein, fimb complement(4462424..4463215) Alicycliphilus denitrificans BC 10106346 YP_004128848.1 CDS Alide_4260 NC_014910.1 4463310 4463879 R KEGG: pau:PA14_58730 type IV pilin structural subunit; type IV pilin structural subunit complement(4463310..4463879) Alicycliphilus denitrificans BC 10106347 YP_004128849.1 CDS Alide_4261 NC_014910.1 4464181 4464969 R KEGG: pol:Bpro_4676 cyclic-AMP phosphodiesterase; cyclic-amp phosphodiesterase complement(4464181..4464969) Alicycliphilus denitrificans BC 10106348 YP_004128850.1 CDS Alide_4262 NC_014910.1 4465037 4465663 R KEGG: ajs:Ajs_4043 FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; forkhead-associated protein complement(4465037..4465663) Alicycliphilus denitrificans BC 10106349 YP_004128851.1 CDS Alide_4263 NC_014910.1 4465725 4466531 R KEGG: ajs:Ajs_4044 protein phosphatase 2C domain-containing protein; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; protein phosphatase 2C complement(4465725..4466531) Alicycliphilus denitrificans BC 10106350 YP_004128852.1 CDS Alide_4264 NC_014910.1 4466758 4467441 R PFAM: Integral membrane protein TerC; KEGG: ajs:Ajs_4045 integral membrane protein TerC; integral membrane protein TerC complement(4466758..4467441) Alicycliphilus denitrificans BC 10106351 YP_004128853.1 CDS Alide_4265 NC_014910.1 4467583 4468476 R KEGG: dia:Dtpsy_3391 succinyl-CoA synthetase subunit alpha; TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein; succinyl-CoA synthetase subunit alpha complement(4467583..4468476) Alicycliphilus denitrificans BC 10106352 YP_004128854.1 CDS Alide_4266 NC_014910.1 4468498 4469658 R TIGRFAM: succinyl-CoA synthetase, beta subunit; KEGG: dia:Dtpsy_3392 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta complement(4468498..4469658) Alicycliphilus denitrificans BC 10106353 YP_004128855.1 CDS Alide_4267 NC_014910.1 4469833 4470765 D TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: dia:Dtpsy_3393 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; N-acetyl-gamma-glutamyl-phosphate reductase 4469833..4470765 Alicycliphilus denitrificans BC 10106354 YP_004128856.1 CDS Alide_4268 NC_014910.1 4470874 4472013 R KEGG: ajs:Ajs_4049 fis family transcriptional regulator; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein dpra complement(4470874..4472013) Alicycliphilus denitrificans BC 10106355 YP_004128857.1 CDS Alide_4269 NC_014910.1 4472037 4473251 R KEGG: ajs:Ajs_4050 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; peptidoglycan-binding lysin domain-containing protein complement(4472037..4473251) Alicycliphilus denitrificans BC 10106356 YP_004128858.1 CDS Alide_4270 NC_014910.1 4473451 4473966 D KEGG: dia:Dtpsy_3396 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 4473451..4473966 Alicycliphilus denitrificans BC 10106357 YP_004128859.1 CDS Alide_4271 NC_014910.1 4473963 4474448 D KEGG: ajs:Ajs_4052 lipoprotein transmembrane; lipoprotein transmembrane 4473963..4474448 Alicycliphilus denitrificans BC 10106358 YP_004128860.1 CDS Alide_4272 NC_014910.1 4474459 4475514 D KEGG: ajs:Ajs_4053 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase 4474459..4475514 Alicycliphilus denitrificans BC 10106359 YP_004128861.1 CDS Alide_4273 NC_014910.1 4475511 4476260 D PFAM: AzlC family protein; KEGG: ajs:Ajs_4054 AzlC family protein; azlc family protein 4475511..4476260 Alicycliphilus denitrificans BC 10106360 YP_004128862.1 CDS Alide_4274 NC_014910.1 4476257 4476592 D PFAM: branched-chain amino acid transport; KEGG: dia:Dtpsy_3400 branched-chain amino acid transport; branched-chain amino acid transport 4476257..4476592 Alicycliphilus denitrificans BC 10106361 YP_004128863.1 CDS Alide_4275 NC_014910.1 4476663 4477856 D KEGG: dia:Dtpsy_3401 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; phosphoglycerate kinase 4476663..4477856 Alicycliphilus denitrificans BC 10106362 YP_004128864.1 CDS Alide_4276 NC_014910.1 4478016 4478702 D KEGG: dac:Daci_0827 hypothetical protein; hypothetical protein 4478016..4478702 Alicycliphilus denitrificans BC 10106363 YP_004128865.1 CDS Alide_4277 NC_014910.1 4478699 4479253 D KEGG: dac:Daci_0826 hypothetical protein; hypothetical protein 4478699..4479253 Alicycliphilus denitrificans BC 10106364 YP_004128866.1 CDS Alide_4278 NC_014910.1 4479367 4480248 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dia:Dtpsy_3402 protein of unknown function DUF6 transmembrane; hypothetical protein complement(4479367..4480248) Alicycliphilus denitrificans BC 10106365 YP_004128867.1 CDS Alide_4279 NC_014910.1 4480298 4481122 D TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: dia:Dtpsy_3403 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 4480298..4481122 Alicycliphilus denitrificans BC 10106366 YP_004128868.1 CDS Alide_4280 NC_014910.1 4481139 4482035 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dia:Dtpsy_3404 transcriptional regulator, LysR family; LysR family transcriptional regulator 4481139..4482035 Alicycliphilus denitrificans BC 10106367 YP_004128869.1 CDS Alide_4281 NC_014910.1 4482155 4483147 D KEGG: ajs:Ajs_4060 hypothetical protein; hypothetical protein 4482155..4483147 Alicycliphilus denitrificans BC 10106368 YP_004128870.1 CDS Alide_4282 NC_014910.1 4483144 4484118 D KEGG: dia:Dtpsy_3406 hypothetical protein; hypothetical protein 4483144..4484118 Alicycliphilus denitrificans BC 10106369 YP_004128871.1 CDS Alide_4283 NC_014910.1 4484248 4486215 D KEGG: aav:Aave_4703 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 4484248..4486215 Alicycliphilus denitrificans BC 10106370 YP_004128872.1 CDS Alide_4284 NC_014910.1 4486250 4489318 R KEGG: dia:Dtpsy_3409 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; excinuclease ABC subunit A complement(4486250..4489318) Alicycliphilus denitrificans BC 10106371 YP_004128873.1 CDS Alide_4285 NC_014910.1 4489501 4490679 D PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_4065 major facilitator superfamily transporter; major facilitator superfamily protein 4489501..4490679 Alicycliphilus denitrificans BC 10106372 YP_004128874.1 CDS Alide_4286 NC_014910.1 4490822 4491355 D KEGG: ajs:Ajs_4066 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 4490822..4491355 Alicycliphilus denitrificans BC 10106373 YP_004128875.1 CDS Alide_4287 NC_014910.1 4491490 4492338 D KEGG: bbr:BB4747 transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 4491490..4492338 Alicycliphilus denitrificans BC 10106374 YP_004128876.1 CDS Alide_4288 NC_014910.1 4492348 4493529 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4746 hypothetical protein; l-carnitine dehydratase/bile acid-inducible protein f complement(4492348..4493529) Alicycliphilus denitrificans BC 10106375 YP_004128877.1 CDS Alide_4289 NC_014910.1 4493540 4494523 R KEGG: bbr:BB4754 hypothetical protein; hypothetical protein complement(4493540..4494523) Alicycliphilus denitrificans BC 10106376 YP_004128878.1 CDS Alide_4290 NC_014910.1 4494558 4495001 R PFAM: thioesterase superfamily protein; KEGG: bbr:BB4745 hypothetical protein; thioesterase superfamily protein complement(4494558..4495001) Alicycliphilus denitrificans BC 10106377 YP_004128879.1 CDS Alide_4291 NC_014910.1 4495017 4495994 R KEGG: bbr:BB4749 hypothetical protein; hypothetical protein complement(4495017..4495994) Alicycliphilus denitrificans BC 10106378 YP_004128880.1 CDS Alide_4292 NC_014910.1 4496026 4496793 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB4750 short chain dehyrogenase; short-chain dehydrogenase/reductase sdr complement(4496026..4496793) Alicycliphilus denitrificans BC 10106379 YP_004128881.1 CDS Alide_4293 NC_014910.1 4496823 4497305 R PFAM: MaoC domain protein dehydratase; KEGG: bbr:BB4751 hypothetical protein; MaoC domain-containing protein complement(4496823..4497305) Alicycliphilus denitrificans BC 10106380 YP_004128882.1 CDS Alide_4294 NC_014910.1 4497326 4498474 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB4752 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(4497326..4498474) Alicycliphilus denitrificans BC 10106381 YP_004128883.1 CDS Alide_4295 NC_014910.1 4498482 4499726 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4753 hypothetical protein; l-carnitine dehydratase/bile acid-inducible protein f complement(4498482..4499726) Alicycliphilus denitrificans BC 10106382 YP_004128884.1 CDS Alide_4296 NC_014910.1 4499931 4500713 D KEGG: reu:Reut_C6107 1,4-dihydroxy-2-naphthoate synthase; TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; PFAM: Enoyl-CoA hydratase/isomerase; 2-ketocyclohexanecarboxyl-CoA hydrolase 4499931..4500713 Alicycliphilus denitrificans BC 10106383 YP_004128885.1 CDS Alide_4297 NC_014910.1 4500874 4502535 R KEGG: ajs:Ajs_4067 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; l-lactate transport complement(4500874..4502535) Alicycliphilus denitrificans BC 10106384 YP_004128886.1 CDS Alide_4298 NC_014910.1 4502775 4503896 R TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dia:Dtpsy_3413 tRNA-specific 2-thiouridylase MnmA; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase complement(4502775..4503896) Alicycliphilus denitrificans BC 10106385 YP_004128887.1 CDS Alide_4299 NC_014910.1 4503893 4504834 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_0298 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4503893..4504834) Alicycliphilus denitrificans BC 10106386 YP_004128888.1 CDS Alide_4300 NC_014910.1 4504938 4506026 D PFAM: protein of unknown function DUF453; KEGG: vei:Veis_0299 hypothetical protein; hypothetical protein 4504938..4506026 Alicycliphilus denitrificans BC 10106387 YP_004128889.1 CDS Alide_4301 NC_014910.1 4506079 4507068 D KEGG: vei:Veis_0300 hypothetical protein; hypothetical protein 4506079..4507068 Alicycliphilus denitrificans BC 10106388 YP_004128890.1 CDS Alide_4302 NC_014910.1 4507090 4508175 D PFAM: porin Gram-negative type; KEGG: vei:Veis_0301 porin; porin 4507090..4508175 Alicycliphilus denitrificans BC 10106389 YP_004128891.1 CDS Alide_4303 NC_014910.1 4508253 4509197 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_3816 LysR family transcriptional regulator; LysR family transcriptional regulator 4508253..4509197 Alicycliphilus denitrificans BC 10106390 YP_004128892.1 CDS Alide_4304 NC_014910.1 4509435 4510871 D KEGG: dia:Dtpsy_3415 tricarballylate dehydrogenase; TIGRFAM: precorrin 3B synthase CobZ; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; precorrin 3b synthase cobz 4509435..4510871 Alicycliphilus denitrificans BC 10106391 YP_004128893.1 CDS Alide_4305 NC_014910.1 4510858 4512045 D TIGRFAM: CitB domain protein; KEGG: ajs:Ajs_4071 CitB domain-containing protein; citb domain-containing protein 4510858..4512045 Alicycliphilus denitrificans BC 10106392 YP_004128894.1 CDS Alide_4306 NC_014910.1 4512131 4513108 D KEGG: dia:Dtpsy_3417 hypothetical protein; hypothetical protein 4512131..4513108 Alicycliphilus denitrificans BC 10106393 YP_004128895.1 CDS Alide_4307 NC_014910.1 4513151 4514827 R KEGG: dia:Dtpsy_3418 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein complement(4513151..4514827) Alicycliphilus denitrificans BC 10106394 YP_004128896.1 CDS Alide_4308 NC_014910.1 4514989 4516536 D PFAM: carboxyl transferase; KEGG: dia:Dtpsy_3419 propionyl-CoA carboxylase; carboxyl transferase 4514989..4516536 Alicycliphilus denitrificans BC 10106395 YP_004128897.1 CDS Alide_4309 NC_014910.1 4516566 4517576 D KEGG: dac:Daci_1098 hypothetical protein; hypothetical protein 4516566..4517576 Alicycliphilus denitrificans BC 10106396 YP_004128898.1 CDS Alide_4310 NC_014910.1 4517586 4519664 D PFAM: CoA-binding domain protein; KEGG: dia:Dtpsy_3421 CoA-binding domain protein; CoA-binding protein 4517586..4519664 Alicycliphilus denitrificans BC 10106397 YP_004128899.1 CDS Alide_4311 NC_014910.1 4519661 4521028 D KEGG: dac:Daci_1096 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin carboxylase 4519661..4521028 Alicycliphilus denitrificans BC 10106398 YP_004128900.1 CDS Alide_4312 NC_014910.1 4521040 4521252 D PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: dia:Dtpsy_3423 biotin/lipoyl attachment domain-containing protein; biotin/lipoyl attachment domain-containing protein 4521040..4521252 Alicycliphilus denitrificans BC 10106399 YP_004128901.1 CDS Alide_4313 NC_014910.1 4521249 4521683 D PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_3424 thioesterase superfamily protein; thioesterase superfamily protein 4521249..4521683 Alicycliphilus denitrificans BC 10106400 YP_004128902.1 CDS Alide_4314 NC_014910.1 4521710 4522195 R PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_3425 NUDIX hydrolase; nudix hydrolase complement(4521710..4522195) Alicycliphilus denitrificans BC 10106401 YP_004128903.1 CDS Alide_4315 NC_014910.1 4522292 4522675 D KEGG: dia:Dtpsy_3426 hypothetical protein; hypothetical protein 4522292..4522675 Alicycliphilus denitrificans BC 10106402 YP_004128904.1 CDS Alide_4316 NC_014910.1 4522785 4524902 D KEGG: ajs:Ajs_4075 TonB-dependent copper receptor; TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; tonb-dependent copper receptor 4522785..4524902 Alicycliphilus denitrificans BC 10106403 YP_004128905.1 CDS Alide_4317 NC_014910.1 4525122 4525586 D PFAM: thioesterase superfamily protein; KEGG: met:M446_5737 thioesterase superfamily protein; thioesterase superfamily protein 4525122..4525586 Alicycliphilus denitrificans BC 10106404 YP_004128906.1 CDS Alide_4318 NC_014910.1 4525636 4526514 D KEGG: bxe:Bxe_C0866 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 4525636..4526514 Alicycliphilus denitrificans BC 10106405 YP_004128907.1 CDS Alide_4319 NC_014910.1 4526549 4527526 R KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein complement(4526549..4527526) Alicycliphilus denitrificans BC 10106406 YP_004128908.1 CDS Alide_4320 NC_014910.1 4527562 4528755 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpf:Rpic12D_1541 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f complement(4527562..4528755) Alicycliphilus denitrificans BC 10106407 YP_004128909.1 CDS Alide_4321 NC_014910.1 4528757 4529896 R KEGG: pzu:PHZ_c2530 hypothetical protein; hypothetical protein complement(4528757..4529896) Alicycliphilus denitrificans BC 10106408 YP_004128910.1 CDS Alide_4322 NC_014910.1 4529936 4531486 R PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK2759 acetyl-CoA synthetase (acetate-CoA ligase); AMP-dependent synthetase/ligase complement(4529936..4531486) Alicycliphilus denitrificans BC 10106409 YP_004128911.1 CDS Alide_4323 NC_014910.1 4531733 4532440 R TIGRFAM: riboflavin synthase, alpha subunit; KEGG: ajs:Ajs_4077 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha complement(4531733..4532440) Alicycliphilus denitrificans BC 10106410 YP_004128912.1 CDS Alide_4324 NC_014910.1 4532570 4533184 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bav:BAV2734 amino acid efflux protein; lysine exporter protein (lyse/ygga) 4532570..4533184 Alicycliphilus denitrificans BC 10106411 YP_004128913.1 CDS Alide_4325 NC_014910.1 4533191 4534564 R KEGG: ajs:Ajs_4082 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; ATP-binding domain-containing protein complement(4533191..4534564) Alicycliphilus denitrificans BC 10106412 YP_004128914.1 CDS Alide_4326 NC_014910.1 4534817 4535494 R KEGG: dia:Dtpsy_3431 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver complement(4534817..4535494) Alicycliphilus denitrificans BC 10106413 YP_004128915.1 CDS Alide_4327 NC_014910.1 4535494 4535811 R PFAM: Propeptide PepSY amd peptidase M4; KEGG: dia:Dtpsy_3432 propeptide PepSY amd peptidase M4; propeptide pepsy amd peptidase m4 complement(4535494..4535811) Alicycliphilus denitrificans BC 10106414 YP_004128916.1 CDS Alide_4328 NC_014910.1 4535950 4536261 D KEGG: bpt:Bpet0098 hypothetical protein; hypothetical protein 4535950..4536261 Alicycliphilus denitrificans BC 10106415 YP_004128917.1 CDS Alide_4329 NC_014910.1 4536295 4537677 D PFAM: Ferric reductase domain protein transmembrane component domain; Oxidoreductase FAD-binding domain protein; KEGG: dia:Dtpsy_3433 ferric reductase domain protein transmembrane component; ferric reductase 4536295..4537677 Alicycliphilus denitrificans BC 10106416 YP_004128918.1 CDS Alide_4330 NC_014910.1 4537753 4538307 D KEGG: pag:PLES_43981 cytochrome b561; cytochrome b561 4537753..4538307 Alicycliphilus denitrificans BC 10106417 YP_004128919.1 CDS Alide_4331 NC_014910.1 4538356 4538724 D KEGG: dia:Dtpsy_3434 hypothetical protein; hypothetical protein 4538356..4538724 Alicycliphilus denitrificans BC 10106418 YP_004128920.1 CDS Alide_4332 NC_014910.1 4538747 4539226 D KEGG: ajs:Ajs_4087 hypothetical protein; hypothetical protein 4538747..4539226 Alicycliphilus denitrificans BC 10106419 YP_004128921.1 CDS Alide_4333 NC_014910.1 4539223 4541433 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: ajs:Ajs_4088 oxidoreductase FAD/NAD(P)-binding subunit; oxidoreductase fad/nad(p)-binding domain-containing protein 4539223..4541433 Alicycliphilus denitrificans BC 10106420 YP_004128922.1 CDS Alide_4334 NC_014910.1 4541414 4542391 D PFAM: ApbE family lipoprotein; KEGG: dia:Dtpsy_3437 ApbE family lipoprotein; apbe family lipoprotein 4541414..4542391 Alicycliphilus denitrificans BC 10106421 YP_004128923.1 CDS Alide_4335 NC_014910.1 4542493 4542798 D KEGG: ajs:Ajs_4090 hypothetical protein; hypothetical protein 4542493..4542798 Alicycliphilus denitrificans BC 10106422 YP_004128924.1 CDS Alide_4336 NC_014910.1 4542814 4543281 R KEGG: ajs:Ajs_4091 hypothetical protein; hypothetical protein complement(4542814..4543281) Alicycliphilus denitrificans BC 10106423 YP_004128925.1 CDS Alide_4337 NC_014910.1 4543353 4545902 D KEGG: dia:Dtpsy_3444 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; ATPase P 4543353..4545902 Alicycliphilus denitrificans BC 10106424 YP_004128926.1 CDS Alide_4340 NC_014910.1 4547583 4548677 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: bpt:Bpet0267 hypothetical protein; 2-nitropropane dioxygenase complement(4547583..4548677) Alicycliphilus denitrificans BC 10106427 YP_004128927.1 CDS Alide_4341 NC_014910.1 4548679 4549650 R KEGG: bpt:Bpetpseudo_01 hypothetical protein; hypothetical protein complement(4548679..4549650) Alicycliphilus denitrificans BC 10106428 YP_004128928.1 CDS Alide_4342 NC_014910.1 4549680 4550834 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bpt:Bpet0266 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(4549680..4550834) Alicycliphilus denitrificans BC 10106429 YP_004128929.1 CDS Alide_4343 NC_014910.1 4550853 4551662 R KEGG: bpt:Bpet0265 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr complement(4550853..4551662) Alicycliphilus denitrificans BC 10106430 YP_004128930.1 CDS Alide_4344 NC_014910.1 4551852 4553192 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase; l-carnitine dehydratase/bile acid-inducible protein f 4551852..4553192 Alicycliphilus denitrificans BC 10106431 YP_004128931.1 CDS Alide_4345 NC_014910.1 4553210 4554211 D KEGG: bpt:Bpet0263 alcohol dehydrogenase III; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; quinone oxidoreductase, yhdh/yhfp family 4553210..4554211 Alicycliphilus denitrificans BC 10106432 YP_004128932.1 CDS Alide_4347 NC_014910.1 4554441 4555673 R PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: sth:STH2463 acyl-CoA dehydrogenase, short-chain specific; acyl-CoA dehydrogenase complement(4554441..4555673) Alicycliphilus denitrificans BC 10106434 YP_004128933.1 CDS Alide_4348 NC_014910.1 4555687 4556673 R KEGG: bpt:Bpetpseudo_01 hypothetical protein; hypothetical protein complement(4555687..4556673) Alicycliphilus denitrificans BC 10106435 YP_004128934.1 CDS Alide_4349 NC_014910.1 4556711 4557571 R KEGG: bpt:Bpet0265 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr complement(4556711..4557571) Alicycliphilus denitrificans BC 10106436 YP_004128935.1 CDS Alide_4350 NC_014910.1 4557656 4558891 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase; l-carnitine dehydratase/bile acid-inducible protein f 4557656..4558891 Alicycliphilus denitrificans BC 10106437 YP_004128936.1 CDS Alide_4351 NC_014910.1 4558888 4559829 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_4196 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4558888..4559829) Alicycliphilus denitrificans BC 10106438 YP_004128937.1 CDS Alide_4352 NC_014910.1 4559936 4560922 D KEGG: vap:Vapar_1641 hypothetical protein; hypothetical protein 4559936..4560922 Alicycliphilus denitrificans BC 10106439 YP_004128938.1 CDS Alide_4353 NC_014910.1 4560934 4562553 D TIGRFAM: gamma-glutamyltransferase; KEGG: vap:Vapar_1640 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 4560934..4562553 Alicycliphilus denitrificans BC 10106440 YP_004128939.1 CDS Alide_4354 NC_014910.1 4562569 4563231 R KEGG: scl:sce0660 ABC transporter sodium permease; hypothetical protein complement(4562569..4563231) Alicycliphilus denitrificans BC 10106441 YP_004128940.1 CDS Alide_4355 NC_014910.1 4563384 4565051 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: ajs:Ajs_4093 twin-arginine translocation pathway signal; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(4563384..4565051) Alicycliphilus denitrificans BC 10106442 YP_004128941.1 CDS Alide_4356 NC_014910.1 4565051 4566604 R PFAM: Spermine synthase; KEGG: dia:Dtpsy_3446 spermidine synthase; spermine synthase complement(4565051..4566604) Alicycliphilus denitrificans BC 10106443 YP_004128942.1 CDS Alide_4357 NC_014910.1 4566618 4566839 R PFAM: protein of unknown function DUF350; KEGG: dia:Dtpsy_3447 protein of unknown function DUF350; hypothetical protein complement(4566618..4566839) Alicycliphilus denitrificans BC 10106444 YP_004128943.1 CDS Alide_4358 NC_014910.1 4566876 4568360 R KEGG: dia:Dtpsy_3448 transmembrane protein; transmembrane protein complement(4566876..4568360) Alicycliphilus denitrificans BC 10106445 YP_004128944.1 CDS Alide_4359 NC_014910.1 4568429 4569466 R PFAM: band 7 protein; KEGG: ajs:Ajs_4099 transmembrane protein; hypothetical protein complement(4568429..4569466) Alicycliphilus denitrificans BC 10106446 YP_004128945.1 CDS Alide_4360 NC_014910.1 4569635 4569943 D PFAM: Protein of unknown function DUF2061, membrane; KEGG: dia:Dtpsy_3450 hypothetical protein; hypothetical protein 4569635..4569943 Alicycliphilus denitrificans BC 10106447 YP_004128946.1 CDS Alide_4361 NC_014910.1 4569865 4570188 R KEGG: dia:Dtpsy_3453 flagellar basal body rod protein; flagellar basal body rod protein complement(4569865..4570188) Alicycliphilus denitrificans BC 10106448 YP_004128947.1 CDS Alide_4362 NC_014910.1 4570250 4571194 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_3454 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4570250..4571194) Alicycliphilus denitrificans BC 10106449 YP_004128948.1 CDS Alide_4363 NC_014910.1 4571286 4572641 D KEGG: aav:Aave_4744 beta alanine--pyruvate transaminase; PFAM: aminotransferase class-III; beta-alanine--pyruvate transaminase 4571286..4572641 Alicycliphilus denitrificans BC 10106450 YP_004128949.1 CDS Alide_4364 NC_014910.1 4572711 4574228 D KEGG: dia:Dtpsy_3456 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; methylmalonate-semialdehyde dehydrogenase 4572711..4574228 Alicycliphilus denitrificans BC 10106451 YP_004128950.1 CDS Alide_4365 NC_014910.1 4574320 4575453 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; KEGG: aav:Aave_4748 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 4574320..4575453 Alicycliphilus denitrificans BC 10106452 YP_004128951.1 CDS Alide_4366 NC_014910.1 4575466 4576305 R KEGG: dia:Dtpsy_3457 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(4575466..4576305) Alicycliphilus denitrificans BC 10106453 YP_004128952.1 CDS Alide_4367 NC_014910.1 4576527 4577732 D KEGG: dia:Dtpsy_3458 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 4576527..4577732 Alicycliphilus denitrificans BC 10106454 YP_004128953.1 CDS Alide_4368 NC_014910.1 4577767 4578627 D PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_3459 inner-membrane translocator; inner-membrane translocator 4577767..4578627 Alicycliphilus denitrificans BC 10106455 YP_004128954.1 CDS Alide_4369 NC_014910.1 4578633 4579628 D PFAM: inner-membrane translocator; KEGG: dac:Daci_6025 inner-membrane translocator; inner-membrane translocator 4578633..4579628 Alicycliphilus denitrificans BC 10106456 YP_004128955.1 CDS Alide_4370 NC_014910.1 4579625 4580407 D KEGG: dia:Dtpsy_3461 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4579625..4580407 Alicycliphilus denitrificans BC 10106457 YP_004128956.1 CDS Alide_4371 NC_014910.1 4580404 4581180 D KEGG: dac:Daci_6027 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4580404..4581180 Alicycliphilus denitrificans BC 10106458 YP_004128957.1 CDS Alide_4372 NC_014910.1 4581194 4582450 D TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: dia:Dtpsy_3463 amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; amidase 4581194..4582450 Alicycliphilus denitrificans BC 10106459 YP_004128958.1 CDS Alide_4373 NC_014910.1 4582447 4583913 D PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: dia:Dtpsy_3464 microcystin LR degradation protein MlrC-like protein; microcystin lr degradation protein mlrc-like protein 4582447..4583913 Alicycliphilus denitrificans BC 10106460 YP_004128959.1 CDS Alide_4374 NC_014910.1 4584061 4586370 D PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: dia:Dtpsy_3465 malic enzyme; malic protein nad-binding protein 4584061..4586370 Alicycliphilus denitrificans BC 10106461 YP_004128960.1 CDS Alide_4375 NC_014910.1 4586504 4586908 D PFAM: guanine-specific ribonuclease N1 and T1; KEGG: dia:Dtpsy_3466 guanine-specific ribonuclease N1 and T1; guanine-specific ribonuclease n1 and t1 4586504..4586908 Alicycliphilus denitrificans BC 10106462 YP_004128961.1 CDS Alide_4376 NC_014910.1 4587049 4587474 D PFAM: Barstar (barnase inhibitor); KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor); barstar (barnase inhibitor) 4587049..4587474 Alicycliphilus denitrificans BC 10106463 YP_004128962.1 CDS Alide_4377 NC_014910.1 4587704 4588471 R TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: dia:Dtpsy_3468 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase-like; dimethyladenosine transferase complement(4587704..4588471) Alicycliphilus denitrificans BC 10106464 YP_004128963.1 CDS Alide_4378 NC_014910.1 4588468 4589883 R PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dia:Dtpsy_3469 SurA domain protein; sura domain-containing protein complement(4588468..4589883) Alicycliphilus denitrificans BC 10106465 YP_004128964.1 CDS Alide_4379 NC_014910.1 4589917 4592361 R PFAM: Organic solvent tolerance protein; KEGG: dia:Dtpsy_3470 organic solvent tolerance protein; organic solvent tolerance protein complement(4589917..4592361) Alicycliphilus denitrificans BC 10106466 YP_004128965.1 CDS Alide_4380 NC_014910.1 4592435 4593550 D PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_4113 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4592435..4593550 Alicycliphilus denitrificans BC 10106467 YP_004128966.1 CDS Alide_4381 NC_014910.1 4593618 4594331 D PFAM: protein of unknown function DUF558; KEGG: dia:Dtpsy_3472 16S ribosomal RNA methyltransferase RsmE; hypothetical protein 4593618..4594331 Alicycliphilus denitrificans BC 10106468 YP_004128967.1 CDS Alide_4382 NC_014910.1 4594331 4595665 D KEGG: dia:Dtpsy_3473 hypothetical protein; hypothetical protein 4594331..4595665 Alicycliphilus denitrificans BC 10106469 YP_004128968.1 CDS Alide_4383 NC_014910.1 4595658 4596362 D KEGG: ajs:Ajs_4116 hypothetical protein; hypothetical protein 4595658..4596362 Alicycliphilus denitrificans BC 10106470 YP_004128969.1 CDS Alide_4384 NC_014910.1 4596363 4599200 D PFAM: SMC domain protein; KEGG: dia:Dtpsy_3475 SMC domain protein; smc domain-containing protein 4596363..4599200 Alicycliphilus denitrificans BC 10106471 YP_004128970.1 CDS Alide_4385 NC_014910.1 4599273 4600736 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dia:Dtpsy_3479 peptidase M20; peptidase m20 complement(4599273..4600736) Alicycliphilus denitrificans BC 10106472 YP_004128971.1 CDS Alide_4386 NC_014910.1 4600810 4601997 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dia:Dtpsy_3480 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase complement(4600810..4601997) Alicycliphilus denitrificans BC 10106473 YP_004128972.1 CDS Alide_4387 NC_014910.1 4602173 4603015 R KEGG: scl:sce1833 hypothetical protein; hypothetical protein complement(4602173..4603015) Alicycliphilus denitrificans BC 10106474 YP_004128973.1 CDS Alide_4388 NC_014910.1 4603152 4604168 D PFAM: Domain of unknown function P63C; KEGG: bbr:BB2198 hypothetical protein; hypothetical protein 4603152..4604168 Alicycliphilus denitrificans BC 10106475 YP_004128974.1 CDS Alide_4389 NC_014910.1 4604170 4604316 R KEGG: cts:Ctha_0467 translation initiation factor IF-2; translation initiation factor if-2 complement(4604170..4604316) Alicycliphilus denitrificans BC 10106476 YP_004128975.1 CDS Alide_4390 NC_014910.1 4604461 4605045 R KEGG: dia:Dtpsy_3482 methionine biosynthesis protein MetW; TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; methionine biosynthesis protein metw complement(4604461..4605045) Alicycliphilus denitrificans BC 10106477 YP_004128976.1 CDS Alide_4391 NC_014910.1 4605042 4606172 R TIGRFAM: homoserine O-acetyltransferase; KEGG: ajs:Ajs_4125 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine o-acetyltransferase complement(4605042..4606172) Alicycliphilus denitrificans BC 10106478 YP_004128977.1 CDS Alide_4392 NC_014910.1 4606305 4606883 R PFAM: protein of unknown function UPF0016; KEGG: dia:Dtpsy_3484 protein of unknown function UPF0016; hypothetical protein complement(4606305..4606883) Alicycliphilus denitrificans BC 10106479 YP_004128978.1 CDS Alide_4393 NC_014910.1 4607355 4607705 D KEGG: dia:Dtpsy_3485 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; rnp-1 like RNA-binding protein 4607355..4607705 Alicycliphilus denitrificans BC 10106480 YP_004128979.1 CDS Alide_4394 NC_014910.1 4607941 4608375 D KEGG: ajs:Ajs_4128 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; rnp-1 like RNA-binding protein 4607941..4608375 Alicycliphilus denitrificans BC 10106481 YP_004128980.1 CDS Alide_4395 NC_014910.1 4608462 4609256 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_4129 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr complement(4608462..4609256) Alicycliphilus denitrificans BC 10106482 YP_004128981.1 CDS Alide_4396 NC_014910.1 4609267 4609908 R PFAM: protein of unknown function DUF1239; KEGG: dia:Dtpsy_3488 protein of unknown function DUF1239; hypothetical protein complement(4609267..4609908) Alicycliphilus denitrificans BC 10106483 YP_004128982.1 CDS Alide_4397 NC_014910.1 4609905 4610477 R KEGG: dia:Dtpsy_3489 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(4609905..4610477) Alicycliphilus denitrificans BC 10106484 YP_004128983.1 CDS Alide_4398 NC_014910.1 4610477 4611478 R SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: ajs:Ajs_4132 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; kpsf/gutq family protein complement(4610477..4611478) Alicycliphilus denitrificans BC 10106485 YP_004128984.1 CDS Alide_4399 NC_014910.1 4611527 4613512 D PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: ajs:Ajs_4133 potassium efflux system protein; sodium/hydrogen exchanger 4611527..4613512 Alicycliphilus denitrificans BC 10106486 YP_004128985.1 CDS Alide_4400 NC_014910.1 4613550 4614104 D KEGG: dia:Dtpsy_3492 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 4613550..4614104 Alicycliphilus denitrificans BC 10106487 YP_004128986.1 CDS Alide_4401 NC_014910.1 4614151 4615038 R KEGG: ajs:Ajs_4136 hypothetical protein; hypothetical protein complement(4614151..4615038) Alicycliphilus denitrificans BC 10106488 YP_004128987.1 CDS Alide_4402 NC_014910.1 4615161 4615646 R KEGG: dia:Dtpsy_3494 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; cyclic nucleotide-binding protein complement(4615161..4615646) Alicycliphilus denitrificans BC 10106489 YP_004128988.1 CDS Alide_4403 NC_014910.1 4615729 4617126 R KEGG: ajs:Ajs_4138 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; tRNA modification gtpase trme complement(4615729..4617126) Alicycliphilus denitrificans BC 10106490 YP_004128989.1 CDS Alide_4404 NC_014910.1 4617204 4618091 R KEGG: aav:Aave_1937 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein complement(4617204..4618091) Alicycliphilus denitrificans BC 10106491 YP_004128990.1 CDS Alide_4405 NC_014910.1 4618361 4619557 D PFAM: FAD dependent oxidoreductase; KEGG: vap:Vapar_1545 D-amino-acid dehydrogenase; FAD-dependent oxidoreductase 4618361..4619557 Alicycliphilus denitrificans BC 10106492 YP_004128991.1 CDS Alide_4406 NC_014910.1 4619561 4620466 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_1935 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4619561..4620466) Alicycliphilus denitrificans BC 10106493 YP_004128992.1 CDS Alide_4407 NC_014910.1 4620494 4621234 R KEGG: aav:Aave_1663 aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; aspartate racemase complement(4620494..4621234) Alicycliphilus denitrificans BC 10106494 YP_004128993.1 CDS Alide_4408 NC_014910.1 4621231 4622049 R PFAM: peptidase M55 D-aminopeptidase; KEGG: aav:Aave_1662 D-aminopeptidase DppA; peptidase m55 d-aminopeptidase complement(4621231..4622049) Alicycliphilus denitrificans BC 10106495 YP_004128994.1 CDS Alide_4409 NC_014910.1 4622114 4623151 R PFAM: peptidase S58 DmpA; KEGG: aav:Aave_1661 aminopeptidase DmpA; peptidase s58 dmpa complement(4622114..4623151) Alicycliphilus denitrificans BC 10106496 YP_004128995.1 CDS Alide_4410 NC_014910.1 4623148 4624056 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1660 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(4623148..4624056) Alicycliphilus denitrificans BC 10106497 YP_004128996.1 CDS Alide_4411 NC_014910.1 4624064 4624984 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1659 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(4624064..4624984) Alicycliphilus denitrificans BC 10106498 YP_004128997.1 CDS Alide_4412 NC_014910.1 4625053 4626597 R PFAM: extracellular solute-binding protein family 5; KEGG: aav:Aave_1658 extracellular solute-binding protein; ABC transporter substrate-binding protein complement(4625053..4626597) Alicycliphilus denitrificans BC 10106499 YP_004128998.1 CDS Alide_4413 NC_014910.1 4626689 4628563 R TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: aav:Aave_1657 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(4626689..4628563) Alicycliphilus denitrificans BC 10106500 YP_004128999.1 CDS Alide_4414 NC_014910.1 4628580 4629578 R PFAM: peptidase T2 asparaginase 2; KEGG: aav:Aave_1656 asparaginase; peptidase t2 asparaginase 2 complement(4628580..4629578) Alicycliphilus denitrificans BC 10106501 YP_004129000.1 CDS Alide_4415 NC_014910.1 4629575 4630507 R PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: aav:Aave_1655 RpiR family transcriptional regulator; sugar isomerase (sis) complement(4629575..4630507) Alicycliphilus denitrificans BC 10106502 YP_004129001.1 CDS Alide_4418 NC_014910.1 4632627 4634213 R PFAM: extracellular solute-binding protein family 5; KEGG: ajs:Ajs_4139 extracellular solute-binding protein; ABC transporter substrate-binding protein complement(4632627..4634213) Alicycliphilus denitrificans BC 10106505 YP_004129002.1 CDS Alide_4419 NC_014910.1 4634321 4636015 R KEGG: dia:Dtpsy_3542 YidC translocase/secretase; TIGRFAM: membrane protein insertase, YidC/Oxa1 family domain containing; membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein; membrane protein insertase complement(4634321..4636015) Alicycliphilus denitrificans BC 10106506 YP_004129003.1 CDS Alide_4420 NC_014910.1 4636012 4636305 R PFAM: protein of unknown function DUF37; KEGG: ajs:Ajs_4141 hypothetical protein; hypothetical protein complement(4636012..4636305) Alicycliphilus denitrificans BC 10106507 YP_004129004.1 CDS Alide_4421 NC_014910.1 4636302 4636742 R KEGG: dia:Dtpsy_3544 hypothetical protein; hypothetical protein complement(4636302..4636742) Alicycliphilus denitrificans BC 10106508 YP_004129005.1 CDS Alide_4422 NC_014910.1 4636785 4636919 R KEGG: vei:Veis_5015 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; 50S ribosomal protein L34 complement(4636785..4636919) Alicycliphilus denitrificans BC 10106509 YP_004129006.1 CDS Alide_4423 NC_014911.1 126 611 D manually curated; KEGG: see:SNSL254_p_0036 hypothetical protein; hypothetical protein 126..611 Alicycliphilus denitrificans BC 10106603 YP_004129007.1 CDS Alide_4424 NC_014911.1 505 4851 R KEGG: reu:Reut_D6521 toprim; PFAM: hypothetical protein; TOPRIM domain-containing protein; SMART: Toprim sub domain-containing protein; hypothetical protein complement(505..4851) Alicycliphilus denitrificans BC 10106512 YP_004129008.1 CDS Alide_4425 NC_014911.1 4855 5244 R KEGG: bam:Bamb_6615 conjugal transfer protein; conjugal transfer protein complement(4855..5244) Alicycliphilus denitrificans BC 10106513 YP_004129009.1 CDS Alide_4426 NC_014911.1 5266 7329 R SMART: DNA topoisomerase I DNA-binding; Toprim sub domain-containing protein; DNA topoisomerase I ATP-binding; TIGRFAM: DNA topoisomerase III; KEGG: bam:Bamb_6614 DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase III complement(5266..7329) Alicycliphilus denitrificans BC 10106514 YP_004129010.1 CDS Alide_4427 NC_014911.1 7341 7877 R KEGG: bam:Bamb_6613 conjugal transfer peptidase TraF; TIGRFAM: conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region; conjugative transfer signal peptidase traf complement(7341..7877) Alicycliphilus denitrificans BC 10106515 YP_004129011.1 CDS Alide_4428 NC_014911.1 7874 9787 R PFAM: TRAG family protein; KEGG: reu:Reut_D6525 conjugal transfer coupling protein TraG; trag family protein complement(7874..9787) Alicycliphilus denitrificans BC 10106516 YP_004129012.1 CDS Alide_4429 NC_014911.1 9784 12024 R PFAM: Relaxase/mobilization nuclease family protein; KEGG: reu:Reut_D6526 conjugal transfer relaxase TraI; relaxase/mobilization nuclease family protein complement(9784..12024) Alicycliphilus denitrificans BC 10106517 YP_004129013.1 CDS Alide_4430 NC_014911.1 12059 12433 R KEGG: bam:Bamb_6610 conjugal transfer relaxosome component TraJ; conjugal transfer relaxosome component traj complement(12059..12433) Alicycliphilus denitrificans BC 10106518 YP_004129014.1 CDS Alide_4431 NC_014911.1 12807 13205 D KEGG: bam:Bamb_6609 TraK protein of DNA transfer system; trak protein of DNA transfer system 12807..13205 Alicycliphilus denitrificans BC 10106519 YP_004129015.1 CDS Alide_4432 NC_014911.1 13205 13930 D KEGG: reu:Reut_D6529 conjugal transfer protein TraL; conjugal transfer protein tral 13205..13930 Alicycliphilus denitrificans BC 10106520 YP_004129016.1 CDS Alide_4433 NC_014911.1 13930 14370 D KEGG: bam:Bamb_6607 conjugal transfer protein TraM; conjugal transfer protein tram 13930..14370 Alicycliphilus denitrificans BC 10106521 YP_004129017.1 CDS Alide_4434 NC_014911.1 14573 15226 R KEGG: bam:Bamb_6606 hypothetical protein; hypothetical protein complement(14573..15226) Alicycliphilus denitrificans BC 10106522 YP_004129018.1 CDS Alide_4435 NC_014911.1 15255 15602 R KEGG: bam:Bamb_6605 conjugation protein TraO; conjugation protein trao complement(15255..15602) Alicycliphilus denitrificans BC 10106523 YP_004129019.1 CDS Alide_4436 NC_014911.1 15773 16804 R KEGG: reu:Reut_D6443 hypothetical protein; hypothetical protein complement(15773..16804) Alicycliphilus denitrificans BC 10106524 YP_004129020.1 CDS Alide_4437 NC_014911.1 16983 18032 R TIGRFAM: parB-like partition protein; PFAM: KorB domain protein; ParB domain protein nuclease; KEGG: bam:Bamb_6603 ParB-like partition proteins; SMART: ParB domain protein nuclease; parb-like partition protein complement(16983..18032) Alicycliphilus denitrificans BC 10106525 YP_004129021.1 CDS Alide_4438 NC_014911.1 18029 18793 R KEGG: bam:Bamb_6602 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(18029..18793) Alicycliphilus denitrificans BC 10106526 YP_004129022.1 CDS Alide_4439 NC_014911.1 18790 19092 R KEGG: eba:p2D2 TrfB transcriptional repressor protein; trfb transcriptional repressor protein complement(18790..19092) Alicycliphilus denitrificans BC 10106527 YP_004129023.1 CDS Alide_4440 NC_014911.1 19206 19736 R KEGG: bam:Bamb_6601 hypothetical protein; hypothetical protein complement(19206..19736) Alicycliphilus denitrificans BC 10106528 YP_004129024.1 CDS Alide_4441 NC_014911.1 19738 20067 R KEGG: bam:Bamb_6600 hypothetical protein; hypothetical protein complement(19738..20067) Alicycliphilus denitrificans BC 10106529 YP_004129025.1 CDS Alide_4442 NC_014911.1 20212 20427 R KEGG: api:100160724 similar to glyoxylate reductase/hydroxypyruvate reductase; glyoxylate reductase/hydroxypyruvate reductase-like protein complement(20212..20427) Alicycliphilus denitrificans BC 10106530 YP_004129026.1 CDS Alide_4443 NC_014911.1 20486 20722 R KEGG: bam:Bamb_6599 hypothetical protein; hypothetical protein complement(20486..20722) Alicycliphilus denitrificans BC 10106531 YP_004129027.1 CDS Alide_4444 NC_014911.1 20882 21139 R KEGG: bam:Bamb_6598 hypothetical protein; hypothetical protein complement(20882..21139) Alicycliphilus denitrificans BC 10106532 YP_004129028.1 CDS Alide_4445 NC_014911.1 21156 22361 R KEGG: bam:Bamb_6597 hypothetical protein; hypothetical protein complement(21156..22361) Alicycliphilus denitrificans BC 10106533 YP_004129029.1 CDS Alide_4446 NC_014911.1 22413 22841 R PFAM: antirestriction protein; KEGG: bam:Bamb_6596 antirestriction protein; antirestriction protein complement(22413..22841) Alicycliphilus denitrificans BC 10106534 YP_004129030.1 CDS Alide_4447 NC_014911.1 24060 24386 D KEGG: rme:Rmet_6068 transposase DNA binding site ISRme15; manually curated; PFAM: transposase IS3/IS911 family protein; transposase is3/is911 family protein 24060..24386 Alicycliphilus denitrificans BC 10106535 YP_004129031.1 CDS Alide_4450 NC_014911.1 26517 26945 R KEGG: app:CAP2UW1_2427 thioesterase superfamily protein; manually curated; PFAM: thioesterase superfamily protein; thioesterase superfamily protein complement(26517..26945) Alicycliphilus denitrificans BC 10106538 YP_004129032.1 CDS Alide_4451 NC_014911.1 27927 29417 D PFAM: Integrase catalytic region; KEGG: tmz:Tmz1t_4040 hypothetical protein; integrase catalytic region protein 27927..29417 Alicycliphilus denitrificans BC 10106539 YP_004129033.1 CDS Alide_4452 NC_014911.1 29404 30162 D KEGG: tmz:Tmz1t_3158 IstB domain protein ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; istb domain protein ATP-binding protein 29404..30162 Alicycliphilus denitrificans BC 10106540 YP_004129034.1 CDS Alide_4453 NC_014911.1 30159 30371 D KEGG: tmz:Tmz1t_4038 ankyrin; hypothetical protein 30159..30371 Alicycliphilus denitrificans BC 10106541 YP_004129035.1 CDS Alide_4454 NC_014911.1 30577 30861 R KEGG: tin:Tint_3241 addiction module toxin, RelE/StbE family; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module toxin, rele/stbe family complement(30577..30861) Alicycliphilus denitrificans BC 10106542 YP_004129036.1 CDS Alide_4455 NC_014911.1 30858 31136 R KEGG: rme:Rmet_6342 antitoxin of a toxin/antitoxin system; antitoxin of a toxin/antitoxin system complement(30858..31136) Alicycliphilus denitrificans BC 10106543 YP_004129037.1 CDS Alide_4456 NC_014911.1 31390 31968 D PFAM: Resolvase domain; KEGG: rpf:Rpic12D_4479 resolvase domain protein; resolvase domain protein 31390..31968 Alicycliphilus denitrificans BC 10106544 YP_004129038.1 CDS Alide_4457 NC_014911.1 31965 34994 D PFAM: transposase Tn3 family protein; KEGG: rpf:Rpic12D_4478 transposase Tn3 family protein; transposase tn3 family protein 31965..34994 Alicycliphilus denitrificans BC 10106545 YP_004129039.1 CDS Alide_4460 NC_014911.1 37288 37626 D PFAM: transposase IS3/IS911 family protein; KEGG: sml:Smlt2414 ISXac3 like transposase for insertion sequence element; transposase is3/is911 family protein 37288..37626 Alicycliphilus denitrificans BC 10106548 YP_004129040.1 CDS Alide_4461 NC_014911.1 37844 39013 R KEGG: ckr:CKR_2452 hypothetical protein; manually curated; PFAM: AAA-4 family protein; aaa-4 family protein complement(37844..39013) Alicycliphilus denitrificans BC 10106549 YP_004129041.1 CDS Alide_4462 NC_014911.1 39142 39846 R PFAM: Glutathione S-transferase domain; KEGG: bpt:Bpet1280 glutathione transferase; glutathione s-transferase domain protein complement(39142..39846) Alicycliphilus denitrificans BC 10106550 YP_004129042.1 CDS Alide_4463 NC_014911.1 39843 40457 R PFAM: regulatory protein TetR; KEGG: bpt:Bpet1592 TetR family transcriptional regulator; regulatory protein tetr complement(39843..40457) Alicycliphilus denitrificans BC 10106551 YP_004129043.1 CDS Alide_4464 NC_014911.1 40521 41315 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_2977 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr complement(40521..41315) Alicycliphilus denitrificans BC 10106552 YP_004129044.1 CDS Alide_4465 NC_014911.1 41317 42033 R PFAM: Glutathione S-transferase domain; KEGG: xau:Xaut_2975 glutathione S-transferase domain-containing protein; glutathione s-transferase domain protein complement(41317..42033) Alicycliphilus denitrificans BC 10106553 YP_004129045.1 CDS Alide_4466 NC_014911.1 42030 43019 R PFAM: hypothetical protein; KEGG: bpy:Bphyt_5155 hypothetical protein; hypothetical protein complement(42030..43019) Alicycliphilus denitrificans BC 10106554 YP_004129046.1 CDS Alide_4467 NC_014911.1 43016 43678 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rcu:RCOM_2149470 bacterioferritin comigratory protein, putative; alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen complement(43016..43678) Alicycliphilus denitrificans BC 10106555 YP_004129047.1 CDS Alide_4468 NC_014911.1 44017 44298 R KEGG: sjp:SJA_P1-00290 RelE/StbE-family addiction module toxin; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module toxin, rele/stbe family complement(44017..44298) Alicycliphilus denitrificans BC 10106556 YP_004129048.1 CDS Alide_4469 NC_014911.1 44285 44551 R KEGG: afr:AFE_1589 DNA-damage-inducible protein J; TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; addiction module antitoxin, relb/dinj family complement(44285..44551) Alicycliphilus denitrificans BC 10106557 YP_004129049.1 CDS Alide_4470 NC_014911.1 45090 46310 R PFAM: TrfA family protein; KEGG: bam:Bamb_6593 TrfA family protein; trfa family protein complement(45090..46310) Alicycliphilus denitrificans BC 10106558 YP_004129050.1 CDS Alide_4471 NC_014911.1 46357 46698 R KEGG: bam:Bamb_6592 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein complement(46357..46698) Alicycliphilus denitrificans BC 10106559 YP_004129051.1 CDS Alide_4472 NC_014911.1 46812 47174 D KEGG: reu:Reut_D6501 conjugal transfer protein TrbA; PFAM: hypothetical protein; SMART: hypothetical protein; hypothetical protein 46812..47174 Alicycliphilus denitrificans BC 10106560 YP_004129052.1 CDS Alide_4473 NC_014911.1 47484 48446 D TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: bam:Bamb_6635 conjugal transfer ATPase TrbB; SMART: AAA ATPase; P-type conjugative transfer atpase trbb 47484..48446 Alicycliphilus denitrificans BC 10106561 YP_004129053.1 CDS Alide_4474 NC_014911.1 48463 48927 D PFAM: Conjugal transfer protein TrbC; KEGG: bam:Bamb_6634 conjugal transfer protein TrbC; conjugal transfer protein trbc 48463..48927 Alicycliphilus denitrificans BC 10106562 YP_004129054.1 CDS Alide_4475 NC_014911.1 48931 49242 D KEGG: ajs:Ajs_4272 conjugal transfer protein TrbD; conjugal transfer protein trbd 48931..49242 Alicycliphilus denitrificans BC 10106563 YP_004129055.1 CDS Alide_4476 NC_014911.1 49239 51797 D TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; KEGG: bam:Bamb_6632 conjugal transfer protein TrbE; SMART: AAA ATPase; type IV secretion/conjugal transfer atpase, virb4 family 49239..51797 Alicycliphilus denitrificans BC 10106564 YP_004129056.1 CDS Alide_4477 NC_014911.1 51794 52576 D KEGG: bam:Bamb_6631 conjugal transfer protein TrbF; conjugal transfer protein trbf 51794..52576 Alicycliphilus denitrificans BC 10106565 YP_004129057.1 CDS Alide_4478 NC_014911.1 52594 53493 D KEGG: bam:Bamb_6630 conjugal transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; P-type conjugative transfer protein trbg 52594..53493 Alicycliphilus denitrificans BC 10106566 YP_004129058.1 CDS Alide_4479 NC_014911.1 53496 53984 D KEGG: bam:Bamb_6629 conjugal transfer protein TrbH; conjugal transfer protein trbh 53496..53984 Alicycliphilus denitrificans BC 10106567 YP_004129059.1 CDS Alide_4480 NC_014911.1 53989 55410 D PFAM: conjugation TrbI family protein; KEGG: bam:Bamb_6628 conjugal transfer protein TrbI; conjugation trbi family protein 53989..55410 Alicycliphilus denitrificans BC 10106568 YP_004129060.1 CDS Alide_4481 NC_014911.1 55431 56195 D KEGG: bam:Bamb_6627 conjugal transfer protein TrbJ; TIGRFAM: P-type conjugative transfer protein TrbJ; PFAM: type IV secretion system family protein; P-type conjugative transfer protein trbj 55431..56195 Alicycliphilus denitrificans BC 10106569 YP_004129061.1 CDS Alide_4482 NC_014911.1 56205 56432 D KEGG: bam:Bamb_6626 entry exclusion protein TrbK; entry exclusion protein trbk 56205..56432 Alicycliphilus denitrificans BC 10106570 YP_004129062.1 CDS Alide_4483 NC_014911.1 56443 58161 D KEGG: bam:Bamb_6625 TrbL/VirB6 plasmid conjugal transfer protein; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; P-type conjugative transfer protein trbl 56443..58161 Alicycliphilus denitrificans BC 10106571 YP_004129063.1 CDS Alide_4484 NC_014911.1 58179 58766 D KEGG: bam:Bamb_6624 conjugal transfer protein TrbM; conjugal transfer protein trbm 58179..58766 Alicycliphilus denitrificans BC 10106572 YP_004129064.1 CDS Alide_4485 NC_014911.1 58780 59415 D PFAM: Lytic transglycosylase catalytic; KEGG: bam:Bamb_6623 conjugal transfer protein TrbN; lytic transglycosylase catalytic 58780..59415 Alicycliphilus denitrificans BC 10106573 YP_004129065.1 CDS Alide_4486 NC_014911.1 59444 59710 D KEGG: bam:Bamb_6622 hypothetical protein; hypothetical protein 59444..59710 Alicycliphilus denitrificans BC 10106574 YP_004129066.1 CDS Alide_4487 NC_014911.1 59710 60408 D KEGG: bam:Bamb_6621 conjugal transfer protein TrbP; conjugal transfer protein trbp 59710..60408 Alicycliphilus denitrificans BC 10106575 YP_004129067.1 CDS Alide_4488 NC_014911.1 60424 60855 D KEGG: ajs:Ajs_4259 hypothetical protein; hypothetical protein 60424..60855 Alicycliphilus denitrificans BC 10106576 YP_004129068.1 CDS Alide_4489 NC_014911.1 61008 61583 R PFAM: Resolvase domain; KEGG: tmz:Tmz1t_2147 resolvase domain protein; resolvase domain protein complement(61008..61583) Alicycliphilus denitrificans BC 10106577 YP_004129069.1 CDS Alide_4490 NC_014911.1 61710 61946 R manually curated; TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: tmz:Tmz1t_2146 addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module toxin, rele/stbe family complement(61710..61946) Alicycliphilus denitrificans BC 10106578 YP_004129070.1 CDS Alide_4491 NC_014911.1 61983 64949 R PFAM: transposase Tn3 family protein; KEGG: tmz:Tmz1t_2145 transposase Tn3 family protein; transposase tn3 family protein complement(61983..64949) Alicycliphilus denitrificans BC 10106579 YP_004129071.1 CDS Alide_4493 NC_014911.1 65117 66835 D PFAM: Integrase catalytic region; Transposase-like Mu; KEGG: rme:Rmet_4045 transposase; integrase catalytic region protein 65117..66835 Alicycliphilus denitrificans BC 10106581 YP_004129072.1 CDS Alide_4494 NC_014911.1 66838 67746 D PFAM: TniB family protein; KEGG: tin:Tint_3210 TniB family protein; tnib family protein 66838..67746 Alicycliphilus denitrificans BC 10106582 YP_004129073.1 CDS Alide_4495 NC_014911.1 67797 68960 D KEGG: bxe:Bxe_C1175 transposition protein TniQ; transposition protein tniq 67797..68960 Alicycliphilus denitrificans BC 10106583 YP_004129074.1 CDS Alide_4496 NC_014911.1 69021 69635 D PFAM: Resolvase domain; KEGG: enc:ECL_A229 TniR protein; resolvase domain protein 69021..69635 Alicycliphilus denitrificans BC 10106584 YP_004129075.1 CDS Alide_4497 NC_014911.1 69688 69924 R PFAM: MerE family protein; KEGG: enc:ECL_A230 mercury resistance protein MerE; mere family protein complement(69688..69924) Alicycliphilus denitrificans BC 10106585 YP_004129076.1 CDS Alide_4498 NC_014911.1 69921 70286 R TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein MerR; KEGG: enc:ECL_A231 mercury repressor protein, MerD; SMART: regulatory protein MerR; mercuric resistance transcriptional repressor protein merd complement(69921..70286) Alicycliphilus denitrificans BC 10106586 YP_004129077.1 CDS Alide_4499 NC_014911.1 70303 71949 R KEGG: enc:ECL_A232 mercuric reductase; TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; mercuric reductase complement(70303..71949) Alicycliphilus denitrificans BC 10106587 YP_004129078.1 CDS Alide_4500 NC_014911.1 71946 72191 R KEGG: enc:ECL_A233 mercury ion transport transmembrane protein MerF; mercury ion transport transmembrane protein merf complement(71946..72191) Alicycliphilus denitrificans BC 10106588 YP_004129079.1 CDS Alide_4501 NC_014911.1 72194 72469 R KEGG: enc:ECL_A234 mercury ion transport protein periplasmic component MerP; TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport protein periplasmic component complement(72194..72469) Alicycliphilus denitrificans BC 10106589 YP_004129080.1 CDS Alide_4502 NC_014911.1 72485 72835 R PFAM: Mercuric transport protein MerT; KEGG: enc:ECL_A235 mercury ion transport integral membrane protein MerT; mercuric transport protein mert complement(72485..72835) Alicycliphilus denitrificans BC 10106590 YP_004129081.1 CDS Alide_4503 NC_014911.1 72907 73341 D TIGRFAM: Hg+2-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: enc:ECL_A236 transcriptional regulator MerR; SMART: regulatory protein MerR; Hg+2-responsive transcriptional regulator 72907..73341 Alicycliphilus denitrificans BC 10106591 YP_004129082.1 CDS Alide_4504 NC_014911.1 73466 74008 R manually curated; KEGG: aba:Acid345_3707 hypothetical protein; hypothetical protein complement(73466..74008) Alicycliphilus denitrificans BC 10106592 YP_004129083.1 CDS Alide_4505 NC_014911.1 74042 74575 R KEGG: xcv:XCV2347 hypothetical protein; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase like protein, ahpd family complement(74042..74575) Alicycliphilus denitrificans BC 10106593 YP_004129084.1 CDS Alide_4506 NC_014911.1 74693 75535 D KEGG: xcv:XCV2346 AraC family transcriptional regulator; PFAM: hypothetical protein; SMART: Helix-turn-helix, AraC domain; hypothetical protein 74693..75535 Alicycliphilus denitrificans BC 10106594 YP_004129085.1 CDS Alide_4507 NC_014911.1 75713 76003 D PFAM: DNA polymerase subunit beta; KEGG: tmz:Tmz1t_2148 DNA polymerase subunit beta; DNA polymerase subunit beta 75713..76003 Alicycliphilus denitrificans BC 10106595 YP_004129086.1 CDS Alide_4508 NC_014911.1 76000 76386 D PFAM: hypothetical protein; KEGG: tmz:Tmz1t_2149 hypothetical protein; hypothetical protein 76000..76386 Alicycliphilus denitrificans BC 10106596 YP_004129087.1 CDS Alide_4509 NC_014911.1 76402 76575 D KEGG: bvi:Bcep1808_7240 hypothetical protein; hypothetical protein 76402..76575 Alicycliphilus denitrificans BC 10106597 YP_004129088.1 CDS Alide_4510 NC_014911.1 76605 76979 D KEGG: tmz:Tmz1t_2150 cupin 2 conserved barrel domain protein; manually curated; PFAM: Cupin 2 conserved barrel domain protein; cupin 2 conserved barrel domain protein 76605..76979 Alicycliphilus denitrificans BC 10106598 YP_004129089.1 CDS Alide_4511 NC_014911.1 77234 77560 D KEGG: tmz:Tmz1t_2151 hypothetical protein; hypothetical protein 77234..77560 Alicycliphilus denitrificans BC 10106599 YP_004129090.1 CDS Alide_4512 NC_014911.1 77557 78057 D KEGG: tmz:Tmz1t_2152 hypothetical protein; hypothetical protein 77557..78057 Alicycliphilus denitrificans BC 10106600 YP_004129091.1 CDS Alide_4513 NC_014911.1 78054 78425 D KEGG: tmz:Tmz1t_2153 hypothetical protein; hypothetical protein 78054..78425 Alicycliphilus denitrificans BC 10106601 YP_004129092.1 CDS Alide_4514 NC_014911.1 78419 78976 D PFAM: Resolvase domain; Resolvase hypothetical protein; KEGG: tmz:Tmz1t_2154 resolvase domain protein; resolvase domain protein 78419..78976 Alicycliphilus denitrificans BC 10106602 Alide_R0001 tRNA Alide_R0001 NC_014910.1 472750 472825 D tRNA-Arg 472750..472825 Alicycliphilus denitrificans BC 10102478 Alide_R0002 tRNA Alide_R0002 NC_014910.1 472974 473059 D tRNA-Tyr 472974..473059 Alicycliphilus denitrificans BC 10102479 Alide_R0003 tRNA Alide_R0003 NC_014910.1 473108 473181 D tRNA-Gly 473108..473181 Alicycliphilus denitrificans BC 10102480 Alide_R0004 tRNA Alide_R0004 NC_014910.1 473222 473296 D tRNA-Thr 473222..473296 Alicycliphilus denitrificans BC 10102481 Alide_R0005 tRNA Alide_R0005 NC_014910.1 474575 474650 D tRNA-Trp 474575..474650 Alicycliphilus denitrificans BC 10102483 Alide_R0006 tRNA Alide_R0006 NC_014910.1 492551 492626 D tRNA-Phe 492551..492626 Alicycliphilus denitrificans BC 10102497 Alide_R0007 tRNA Alide_R0007 NC_014910.1 963264 963339 D tRNA-Thr 963264..963339 Alicycliphilus denitrificans BC 10102937 Alide_R0008 tRNA Alide_R0008 NC_014910.1 982775 982851 R tRNA-Pro complement(982775..982851) Alicycliphilus denitrificans BC 10102955 Alide_R0009 tRNA Alide_R0009 NC_014910.1 1043387 1043463 R tRNA-Gln complement(1043387..1043463) Alicycliphilus denitrificans BC 10103014 Alide_R0010 tRNA Alide_R0010 NC_014910.1 1107343 1107419 R tRNA-Arg complement(1107343..1107419) Alicycliphilus denitrificans BC 10103072 Alide_R0011 tRNA Alide_R0011 NC_014910.1 1113156 1113240 D tRNA-Leu 1113156..1113240 Alicycliphilus denitrificans BC 10103079 Alide_R0012 tRNA Alide_R0012 NC_014910.1 1316742 1316815 R tRNA-Lys complement(1316742..1316815) Alicycliphilus denitrificans BC 10103266 Alide_R0013 tRNA Alide_R0013 NC_014910.1 1353566 1353641 R tRNA-Lys complement(1353566..1353641) Alicycliphilus denitrificans BC 10103321 Alide_R0014 tRNA Alide_R0014 NC_014910.1 1393688 1393764 D tRNA-Val 1393688..1393764 Alicycliphilus denitrificans BC 10103354 Alide_R0015 tRNA Alide_R0015 NC_014910.1 1516026 1516102 R tRNA-Arg complement(1516026..1516102) Alicycliphilus denitrificans BC 10103483 Alide_R0016 tRNA Alide_R0016 NC_014910.1 1555666 1555741 R tRNA-Thr complement(1555666..1555741) Alicycliphilus denitrificans BC 10103522 Alide_R0017 tRNA Alide_R0017 NC_014910.1 1592473 1592548 D tRNA-Ala 1592473..1592548 Alicycliphilus denitrificans BC 10103555 Alide_R0018 tRNA Alide_R0018 NC_014910.1 1592569 1592644 D tRNA-Glu 1592569..1592644 Alicycliphilus denitrificans BC 10103556 Alide_R0019 tRNA Alide_R0019 NC_014910.1 1592692 1592768 D tRNA-Asp 1592692..1592768 Alicycliphilus denitrificans BC 10103557 Alide_R0020 tRNA Alide_R0020 NC_014910.1 1592775 1592850 D tRNA-Ala 1592775..1592850 Alicycliphilus denitrificans BC 10103558 Alide_R0021 tRNA Alide_R0021 NC_014910.1 1592874 1592949 D tRNA-Glu 1592874..1592949 Alicycliphilus denitrificans BC 10103559 Alide_R0022 tRNA Alide_R0022 NC_014910.1 1592997 1593073 D tRNA-Asp 1592997..1593073 Alicycliphilus denitrificans BC 10103560 Alide_R0023 tRNA Alide_R0023 NC_014910.1 1646027 1646102 D tRNA-His 1646027..1646102 Alicycliphilus denitrificans BC 10103616 Alide_R0024 tRNA Alide_R0024 NC_014910.1 1711561 1711636 D tRNA-Lys 1711561..1711636 Alicycliphilus denitrificans BC 10103686 Alide_R0025 tRNA Alide_R0025 NC_014910.1 1898354 1898427 R tRNA-Gly complement(1898354..1898427) Alicycliphilus denitrificans BC 10103888 Alide_R0026 tRNA Alide_R0026 NC_014910.1 1902802 1902878 D tRNA-Pro 1902802..1902878 Alicycliphilus denitrificans BC 10103895 Alide_R0028 tRNA Alide_R0028 NC_014910.1 1999034 1999118 R tRNA-Leu complement(1999034..1999118) Alicycliphilus denitrificans BC 10103983 Alide_R0029 tRNA Alide_R0029 NC_014910.1 1999295 1999379 R tRNA-Leu complement(1999295..1999379) Alicycliphilus denitrificans BC 10103984 Alide_R0030 tRNA Alide_R0030 NC_014910.1 2035587 2035662 D tRNA-Ala 2035587..2035662 Alicycliphilus denitrificans BC 10104019 Alide_R0031 tRNA Alide_R0031 NC_014910.1 2172481 2172573 D tRNA-Ser 2172481..2172573 Alicycliphilus denitrificans BC 10104178 Alide_R0032 tRNA Alide_R0032 NC_014910.1 2261156 2261230 D tRNA-Val 2261156..2261230 Alicycliphilus denitrificans BC 10104269 Alide_R0033 tRNA Alide_R0033 NC_014910.1 2261265 2261339 D tRNA-Val 2261265..2261339 Alicycliphilus denitrificans BC 10104270 Alide_R0035 tRNA Alide_R0035 NC_014910.1 2587160 2587236 R tRNA-Pro complement(2587160..2587236) Alicycliphilus denitrificans BC 10104563 Alide_R0036 tRNA Alide_R0036 NC_014910.1 2701633 2701708 D tRNA-Asn 2701633..2701708 Alicycliphilus denitrificans BC 10104675 Alide_R0037 tRNA Alide_R0037 NC_014910.1 2701761 2701836 D tRNA-Asn 2701761..2701836 Alicycliphilus denitrificans BC 10104676 Alide_R0038 tRNA Alide_R0038 NC_014910.1 2786410 2786500 D tRNA-Ser 2786410..2786500 Alicycliphilus denitrificans BC 10104752 Alide_R0039 tRNA Alide_R0039 NC_014910.1 2994259 2994334 R tRNA-Val complement(2994259..2994334) Alicycliphilus denitrificans BC 10104953 Alide_R0040 tRNA Alide_R0040 NC_014910.1 2998308 2998399 R tRNA-Leu complement(2998308..2998399) Alicycliphilus denitrificans BC 10104958 Alide_R0041 tRNA Alide_R0041 NC_014910.1 2998539 2998614 R tRNA-Gly complement(2998539..2998614) Alicycliphilus denitrificans BC 10104959 Alide_R0042 tRNA Alide_R0042 NC_014910.1 3091261 3091334 R tRNA-Cys complement(3091261..3091334) Alicycliphilus denitrificans BC 10105049 Alide_R0043 tRNA Alide_R0043 NC_014910.1 3091392 3091467 R tRNA-Gly complement(3091392..3091467) Alicycliphilus denitrificans BC 10105050 Alide_R0044 tRNA Alide_R0044 NC_014910.1 3097583 3097668 R tRNA-Leu complement(3097583..3097668) Alicycliphilus denitrificans BC 10105055 Alide_R0047 tRNA Alide_R0047 NC_014910.1 3142143 3142218 R tRNA-Ala complement(3142143..3142218) Alicycliphilus denitrificans BC 10105093 Alide_R0048 tRNA Alide_R0048 NC_014910.1 3142249 3142325 R tRNA-Ile complement(3142249..3142325) Alicycliphilus denitrificans BC 10105094 Alide_R0050 tRNA Alide_R0050 NC_014910.1 3419115 3419204 D tRNA-Ser 3419115..3419204 Alicycliphilus denitrificans BC 10105346 Alide_R0052 tRNA Alide_R0052 NC_014910.1 3510066 3510155 R tRNA-Ser complement(3510066..3510155) Alicycliphilus denitrificans BC 10105432 Alide_R0053 tRNA Alide_R0053 NC_014910.1 3736144 3736218 R tRNA-Arg complement(3736144..3736218) Alicycliphilus denitrificans BC 10105668 Alide_R0054 tRNA Alide_R0054 NC_014910.1 3801243 3801319 D tRNA-Met 3801243..3801319 Alicycliphilus denitrificans BC 10105728 Alide_R0058 tRNA Alide_R0058 NC_014910.1 4002018 4002093 R tRNA-Ala complement(4002018..4002093) Alicycliphilus denitrificans BC 10105913 Alide_R0059 tRNA Alide_R0059 NC_014910.1 4002124 4002200 R tRNA-Ile complement(4002124..4002200) Alicycliphilus denitrificans BC 10105914 Alide_R0061 tRNA Alide_R0061 NC_014910.1 4137240 4137316 R tRNA-Met complement(4137240..4137316) Alicycliphilus denitrificans BC 10106038 Alide_R0064 tRNA Alide_R0064 NC_014910.1 4281109 4281184 R tRNA-Ala complement(4281109..4281184) Alicycliphilus denitrificans BC 10106182 Alide_R0065 tRNA Alide_R0065 NC_014910.1 4281215 4281291 R tRNA-Ile complement(4281215..4281291) Alicycliphilus denitrificans BC 10106183 Alide_R0045 rRNA Alide_R0045 NC_014910.1 3138676 3138788 R 5S ribosomal RNA complement(3138676..3138788) Alicycliphilus denitrificans BC 10105091 Alide_R0046 rRNA Alide_R0046 NC_014910.1 3138905 3141781 R 23S ribosomal RNA complement(3138905..3141781) Alicycliphilus denitrificans BC 10105092 Alide_R0049 rRNA Alide_R0049 NC_014910.1 3142430 3143946 R 16S ribosomal RNA complement(3142430..3143946) Alicycliphilus denitrificans BC 10105095 Alide_R0056 rRNA Alide_R0056 NC_014910.1 3998551 3998663 R 5S ribosomal RNA complement(3998551..3998663) Alicycliphilus denitrificans BC 10105911 Alide_R0057 rRNA Alide_R0057 NC_014910.1 3998780 4001656 R 23S ribosomal RNA complement(3998780..4001656) Alicycliphilus denitrificans BC 10105912 Alide_R0060 rRNA Alide_R0060 NC_014910.1 4002305 4003821 R 16S ribosomal RNA complement(4002305..4003821) Alicycliphilus denitrificans BC 10105915 Alide_R0062 rRNA Alide_R0062 NC_014910.1 4277642 4277754 R 5S ribosomal RNA complement(4277642..4277754) Alicycliphilus denitrificans BC 10106180 Alide_R0063 rRNA Alide_R0063 NC_014910.1 4277871 4280747 R 23S ribosomal RNA complement(4277871..4280747) Alicycliphilus denitrificans BC 10106181 Alide_R0066 rRNA Alide_R0066 NC_014910.1 4281396 4282912 R 16S ribosomal RNA complement(4281396..4282912) Alicycliphilus denitrificans BC 10106184