-- dump date 20140618_193730 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_004123964.1 319760025 10101389 complement(187..1257) 1 NC_014908.1 KEGG: pol:Bpro_5514 hypothetical protein; hypothetical protein 1257 10101389 Alide_4515 Alicycliphilus denitrificans BC hypothetical protein YP_004123964.1 187 R 596153 CDS YP_004123965.1 319760026 10101259 complement(1265..1969) 1 NC_014908.1 KEGG: pol:Bpro_5515 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1969 10101259 Alide_4516 Alicycliphilus denitrificans BC cobyrinic acid a,c-diamide synthase YP_004123965.1 1265 R 596153 CDS YP_004123966.1 319760027 10101260 3068..3346 1 NC_014908.1 KEGG: vei:Veis_3760 hypothetical protein; hypothetical protein 3346 10101260 Alide_4517 Alicycliphilus denitrificans BC hypothetical protein YP_004123966.1 3068 D 596153 CDS YP_004123967.1 319760028 10101261 3348..3851 1 NC_014908.1 manually curated; KEGG: gga:423125 similar to scavenger receptor cysteine-rich type 1 protein CD163c-alpha; hypothetical protein 3851 10101261 Alide_4518 Alicycliphilus denitrificans BC hypothetical protein YP_004123967.1 3348 D 596153 CDS YP_004123968.1 319760029 10101263 4303..4593 1 NC_014908.1 KEGG: dia:Dtpsy_1065 histone family protein nucleoid-structuring protein H-NS; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 4593 10101263 Alide_4520 Alicycliphilus denitrificans BC histone family protein nucleoid-structuring protein H-NS YP_004123968.1 4303 D 596153 CDS YP_004123969.1 319760030 10101264 4606..4926 1 NC_014908.1 KEGG: vap:Vapar_1795 histone family protein nucleoid-structuring protein H-NS; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 4926 10101264 Alide_4521 Alicycliphilus denitrificans BC histone family protein nucleoid-structuring protein H-NS YP_004123969.1 4606 D 596153 CDS YP_004123970.1 319760031 10101265 5025..5441 1 NC_014908.1 KEGG: cph:Cpha266_0558 Mg chelatase, subunit ChlI; hypothetical protein 5441 10101265 Alide_4522 Alicycliphilus denitrificans BC hypothetical protein YP_004123970.1 5025 D 596153 CDS YP_004123971.1 319760032 10101266 5438..7261 1 NC_014908.1 KEGG: see:SNSL254_p_0066 type IV conjugative transfer system protein TraD; type IV conjugative transfer system protein TraD 7261 10101266 Alide_4523 Alicycliphilus denitrificans BC type IV conjugative transfer system protein TraD YP_004123971.1 5438 D 596153 CDS YP_004123972.1 319760033 10101267 7271..7879 1 NC_014908.1 KEGG: pmr:PMI2473 plasmid-related protein; hypothetical protein 7879 10101267 Alide_4524 Alicycliphilus denitrificans BC hypothetical protein YP_004123972.1 7271 D 596153 CDS YP_004123973.1 319760034 10101268 7843..8619 1 NC_014908.1 KEGG: afo:Afer_1731 diguanylate phosphodiesterase; PFAM: EAL domain protein; SMART: EAL domain protein; EAL domain protein 8619 10101268 Alide_4525 Alicycliphilus denitrificans BC EAL domain protein YP_004123973.1 7843 D 596153 CDS YP_004123974.1 319760035 10101269 complement(8616..9077) 1 NC_014908.1 KEGG: cqu:CpipJ_CPIJ000220 conserved oligomeric Golgi complex component 6; hypothetical protein 9077 10101269 Alide_4526 Alicycliphilus denitrificans BC hypothetical protein YP_004123974.1 8616 R 596153 CDS YP_004123975.1 319760036 10101270 9315..9821 1 NC_014908.1 PFAM: Lytic transglycosylase catalytic; KEGG: mpt:Mpe_B0379 invasion protein; Lytic transglycosylase catalytic 9821 10101270 Alide_4527 Alicycliphilus denitrificans BC Lytic transglycosylase catalytic YP_004123975.1 9315 D 596153 CDS YP_004123976.1 319760037 10101271 11454..13577 1 NC_014908.1 KEGG: see:SNSL254_p_0093 hypothetical protein; hypothetical protein 13577 10101271 Alide_4528 Alicycliphilus denitrificans BC hypothetical protein YP_004123976.1 11454 D 596153 CDS YP_004123977.1 319760038 10101272 13962..14285 1 NC_014908.1 KEGG: transcription initiation factor E subunit alpha; hypothetical protein 14285 10101272 Alide_4529 Alicycliphilus denitrificans BC hypothetical protein YP_004123977.1 13962 D 596153 CDS YP_004123978.1 319760039 10101273 14282..14560 1 NC_014908.1 TIGRFAM: type IV conjugative transfer system protein TraL; KEGG: bvi:Bcep1808_6760 pilus assembly protein; type IV conjugative transfer system protein TraL 14560 10101273 Alide_4530 Alicycliphilus denitrificans BC type IV conjugative transfer system protein TraL YP_004123978.1 14282 D 596153 CDS YP_004123979.1 319760040 10101274 14557..15333 1 NC_014908.1 KEGG: mpt:Mpe_B0365 sex pilus assembly protein; hypothetical protein 15333 10101274 Alide_4531 Alicycliphilus denitrificans BC hypothetical protein YP_004123979.1 14557 D 596153 CDS YP_004123980.1 319760041 10101275 15342..16475 1 NC_014908.1 KEGG: mpt:Mpe_B0366 sex pilus assembly protein; hypothetical protein 16475 10101275 Alide_4532 Alicycliphilus denitrificans BC hypothetical protein YP_004123980.1 15342 D 596153 CDS YP_004123981.1 319760042 10101276 16472..17902 1 NC_014908.1 KEGG: bvi:Bcep1808_6757 TraB pilus assembly family protein; TraB pilus assembly family protein 17902 10101276 Alide_4533 Alicycliphilus denitrificans BC TraB pilus assembly family protein YP_004123981.1 16472 D 596153 CDS YP_004123982.1 319760043 10101277 17902..18417 1 NC_014908.1 KEGG: mpt:Mpe_B0369 sex pilus assembly protein; TIGRFAM: type IV conjugative transfer system protein TraV; PFAM: Type IV conjugative transfer system protein TraV; type IV conjugative transfer system protein TraV 18417 10101277 Alide_4534 Alicycliphilus denitrificans BC type IV conjugative transfer system protein TraV YP_004123982.1 17902 D 596153 CDS YP_004123983.1 319760044 10101278 18453..18788 1 NC_014908.1 KEGG: bvi:Bcep1808_6755 hypothetical protein; hypothetical protein 18788 10101278 Alide_4535 Alicycliphilus denitrificans BC hypothetical protein YP_004123983.1 18453 D 596153 CDS YP_004123984.1 319760045 10101279 18799..21243 1 NC_014908.1 TIGRFAM: type-IV secretion system protein TraC; KEGG: mpt:Mpe_B0371 F-pilin subunit assembly into extended F pili; type-IV secretion system protein TraC 21243 10101279 Alide_4536 Alicycliphilus denitrificans BC type-IV secretion system protein TraC YP_004123984.1 18799 D 596153 CDS YP_004123985.1 319760046 10101280 21251..21745 1 NC_014908.1 KEGG: cli:Clim_1282 outer membrane efflux protein; hypothetical protein 21745 10101280 Alide_4537 Alicycliphilus denitrificans BC hypothetical protein YP_004123985.1 21251 D 596153 CDS YP_004123986.1 319760047 10101281 21856..22407 1 NC_014908.1 KEGG: bvi:Bcep1808_6752 putative pilus assembly protein,TrhF (pilin signal peptidase); manually curated; PFAM: Peptidase S26, conserved region; Peptidase S26, conserved region protein 22407 10101281 Alide_4538 Alicycliphilus denitrificans BC Peptidase S26, conserved region protein YP_004123986.1 21856 D 596153 CDS YP_004123987.1 319760048 10101282 22565..23554 1 NC_014908.1 PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: afr:AFE_1095 pilus assembly protein TraW, putative; Type-F conjugative transfer system pilin assembly protein TrbC 23554 10101282 Alide_4539 Alicycliphilus denitrificans BC Type-F conjugative transfer system pilin assembly protein TrbC YP_004123987.1 22565 D 596153 CDS YP_004123988.1 319760049 10101283 23554..24708 1 NC_014908.1 PFAM: TraU family protein; KEGG: afr:AFE_1096 conjugal transfer protein TraU, putative; TraU family protein 24708 10101283 Alide_4540 Alicycliphilus denitrificans BC TraU family protein YP_004123988.1 23554 D 596153 CDS YP_004123989.1 319760050 10101284 24723..28715 1 NC_014908.1 KEGG: pmr:PMI2456 mating pair stabilization protein; hypothetical protein 28715 10101284 Alide_4541 Alicycliphilus denitrificans BC hypothetical protein YP_004123989.1 24723 D 596153 CDS YP_004123990.1 319760051 10101285 29224..30111 1 NC_014908.1 KEGG: pan:PODANSg9310 hypothetical protein; hypothetical protein 30111 10101285 Alide_4542 Alicycliphilus denitrificans BC hypothetical protein YP_004123990.1 29224 D 596153 CDS YP_004123991.1 319760052 10101286 30099..31079 1 NC_014908.1 KEGG: bvi:Bcep1808_6751 sex pilus assembly protein; sex pilus assembly protein 31079 10101286 Alide_4543 Alicycliphilus denitrificans BC sex pilus assembly protein YP_004123991.1 30099 D 596153 CDS YP_004123992.1 319760053 10101287 31082..32590 1 NC_014908.1 PFAM: TraH family protein; KEGG: bvi:Bcep1808_6750 TraH family protein; TraH family protein 32590 10101287 Alide_4544 Alicycliphilus denitrificans BC TraH family protein YP_004123992.1 31082 D 596153 CDS YP_004123993.1 319760054 10101288 32599..38373 1 NC_014908.1 KEGG: cbr:CBG02561 Hypothetical protein CBG02561; hypothetical protein 38373 10101288 Alide_4545 Alicycliphilus denitrificans BC hypothetical protein YP_004123993.1 32599 D 596153 CDS YP_004123994.1 319760055 10101289 38484..39299 1 NC_014908.1 KEGG: dvl:Dvul_0954 Sel1 domain-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain protein repeat-containing protein 39299 10101289 Alide_4546 Alicycliphilus denitrificans BC Sel1 domain protein repeat-containing protein YP_004123994.1 38484 D 596153 CDS YP_004123995.1 319760056 10101290 39372..40256 1 NC_014908.1 KEGG: gfo:GFO_2422 hypothetical protein; hypothetical protein 40256 10101290 Alide_4547 Alicycliphilus denitrificans BC hypothetical protein YP_004123995.1 39372 D 596153 CDS YP_004123996.1 319760057 10101291 complement(40306..41127) 1 NC_014908.1 KEGG: mpt:Mpe_A2996 putative transposase; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB domain protein ATP-binding protein 41127 10101291 Alide_4548 Alicycliphilus denitrificans BC IstB domain protein ATP-binding protein YP_004123996.1 40306 R 596153 CDS YP_004123997.1 319760058 10101292 complement(41124..42635) 1 NC_014908.1 PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_6160 integrase catalytic subunit; Integrase catalytic region protein 42635 10101292 Alide_4549 Alicycliphilus denitrificans BC Integrase catalytic region protein YP_004123997.1 41124 R 596153 CDS YP_004123998.1 319760059 10101294 43639..45165 1 NC_014908.1 PFAM: Integrase catalytic region; regulatory protein MerR; KEGG: ctt:CtCNB1_2459 IstA; Integrase catalytic region protein 45165 10101294 Alide_4551 Alicycliphilus denitrificans BC Integrase catalytic region protein YP_004123998.1 43639 D 596153 CDS YP_004123999.1 319760060 10101295 45155..45958 1 NC_014908.1 KEGG: ctt:CtCNB1_3734 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB domain protein ATP-binding protein 45958 10101295 Alide_4552 Alicycliphilus denitrificans BC IstB domain protein ATP-binding protein YP_004123999.1 45155 D 596153 CDS YP_004124000.1 319760061 10101296 46273..47208 1 NC_014908.1 KEGG: pag:PLES_25131 hypothetical protein; hypothetical protein 47208 10101296 Alide_4553 Alicycliphilus denitrificans BC hypothetical protein YP_004124000.1 46273 D 596153 CDS YP_004124001.1 319760062 10101297 47275..47523 1 NC_014908.1 KEGG: rme:Rmet_6231 hypothetical protein; hypothetical protein 47523 10101297 Alide_4554 Alicycliphilus denitrificans BC hypothetical protein YP_004124001.1 47275 D 596153 CDS YP_004124002.1 319760063 10101298 47525..47635 1 NC_014908.1 hypothetical protein 47635 10101298 Alide_4555 Alicycliphilus denitrificans BC hypothetical protein YP_004124002.1 47525 D 596153 CDS YP_004124003.1 319760064 10101299 47767..48147 1 NC_014908.1 KEGG: rfr:Rfer_4359 hypothetical protein; hypothetical protein 48147 10101299 Alide_4556 Alicycliphilus denitrificans BC hypothetical protein YP_004124003.1 47767 D 596153 CDS YP_004124004.1 319760065 10101300 48419..49102 1 NC_014908.1 KEGG: scb:SCAB_16871 putative oxidoreductase; hypothetical protein 49102 10101300 Alide_4557 Alicycliphilus denitrificans BC hypothetical protein YP_004124004.1 48419 D 596153 CDS YP_004124005.1 319760066 10101301 49184..50155 1 NC_014908.1 KEGG: rfr:Rfer_4370 hypothetical protein; hypothetical protein 50155 10101301 Alide_4558 Alicycliphilus denitrificans BC hypothetical protein YP_004124005.1 49184 D 596153 CDS YP_004124006.1 319760067 10101302 50331..51050 1 NC_014908.1 KEGG: cbr:CBG23756 C. briggsae CBR-SIR-2.1 protein; hypothetical protein 51050 10101302 Alide_4559 Alicycliphilus denitrificans BC hypothetical protein YP_004124006.1 50331 D 596153 CDS YP_004124007.1 319760068 10101303 51131..51385 1 NC_014908.1 KEGG: mpt:Mpe_B0157 hypothetical protein; hypothetical protein 51385 10101303 Alide_4560 Alicycliphilus denitrificans BC hypothetical protein YP_004124007.1 51131 D 596153 CDS YP_004124008.1 319760069 10101304 51382..51564 1 NC_014908.1 hypothetical protein 51564 10101304 Alide_4561 Alicycliphilus denitrificans BC hypothetical protein YP_004124008.1 51382 D 596153 CDS YP_004124009.1 319760070 10101305 51781..52095 1 NC_014908.1 KEGG: tkm:TK90_2628 hypothetical protein; hypothetical protein 52095 10101305 Alide_4562 Alicycliphilus denitrificans BC hypothetical protein YP_004124009.1 51781 D 596153 CDS YP_004124010.1 319760071 10101306 52105..52425 1 NC_014908.1 KEGG: aba:Acid345_4350 2-oxoglutarate dehydrogenase E2 component; hypothetical protein 52425 10101306 Alide_4563 Alicycliphilus denitrificans BC hypothetical protein YP_004124010.1 52105 D 596153 CDS YP_004124011.1 319760072 10101307 52504..52965 1 NC_014908.1 KEGG: ele:Elen_0894 hypothetical protein; hypothetical protein 52965 10101307 Alide_4564 Alicycliphilus denitrificans BC hypothetical protein YP_004124011.1 52504 D 596153 CDS YP_004124012.1 319760073 10101308 53214..53597 1 NC_014908.1 KEGG: svi:Svir_02820 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; hypothetical protein 53597 10101308 Alide_4565 Alicycliphilus denitrificans BC hypothetical protein YP_004124012.1 53214 D 596153 CDS YP_004124013.1 319760074 10101309 53594..53842 1 NC_014908.1 KEGG: pna:Pnap_4210 hypothetical protein; hypothetical protein 53842 10101309 Alide_4566 Alicycliphilus denitrificans BC hypothetical protein YP_004124013.1 53594 D 596153 CDS YP_004124014.1 319760075 10101310 53915..54676 1 NC_014908.1 KEGG: rfr:Rfer_4370 hypothetical protein; hypothetical protein 54676 10101310 Alide_4567 Alicycliphilus denitrificans BC hypothetical protein YP_004124014.1 53915 D 596153 CDS YP_004124015.1 319760076 10101311 54843..55154 1 NC_014908.1 manually curated; KEGG: tin:Tint_1860 hypothetical protein; hypothetical protein 55154 10101311 Alide_4568 Alicycliphilus denitrificans BC hypothetical protein YP_004124015.1 54843 D 596153 CDS YP_004124016.1 319760077 10101312 55151..55882 1 NC_014908.1 KEGG: tin:Tint_1861 hypothetical protein; hypothetical protein 55882 10101312 Alide_4569 Alicycliphilus denitrificans BC hypothetical protein YP_004124016.1 55151 D 596153 CDS YP_004124017.1 319760078 10101313 55886..56215 1 NC_014908.1 manually curated; KEGG: rpf:Rpic12D_2831 hypothetical protein; hypothetical protein 56215 10101313 Alide_4570 Alicycliphilus denitrificans BC hypothetical protein YP_004124017.1 55886 D 596153 CDS YP_004124018.1 319760079 10101314 56208..56780 1 NC_014908.1 manually curated; KEGG: reh:H16_B0351 hypothetical protein; hypothetical protein 56780 10101314 Alide_4571 Alicycliphilus denitrificans BC hypothetical protein YP_004124018.1 56208 D 596153 CDS YP_004124019.1 319760080 10101315 56800..57459 1 NC_014908.1 PFAM: integrase family protein; KEGG: bmj:BMULJ_05815 tyrosine recombinase; integrase family protein 57459 10101315 Alide_4572 Alicycliphilus denitrificans BC integrase family protein YP_004124019.1 56800 D 596153 CDS YP_004124020.1 319760081 10101316 57459..57671 1 NC_014908.1 KEGG: mth:MTH700 hypothetical protein; hypothetical protein 57671 10101316 Alide_4573 Alicycliphilus denitrificans BC hypothetical protein YP_004124020.1 57459 D 596153 CDS YP_004124021.1 319760082 10101317 57762..57953 1 NC_014908.1 KEGG: mgr:MGG_03826 hypothetical protein; hypothetical protein 57953 10101317 Alide_4574 Alicycliphilus denitrificans BC hypothetical protein YP_004124021.1 57762 D 596153 CDS YP_004124022.1 319760083 10101318 58591..58983 1 NC_014908.1 KEGG: bid:Bind_3528 AraC family transcriptional regulator; hypothetical protein 58983 10101318 Alide_4575 Alicycliphilus denitrificans BC hypothetical protein YP_004124022.1 58591 D 596153 CDS YP_004124023.1 319760084 10101319 58998..59384 1 NC_014908.1 KEGG: rpf:Rpic12D_4799 hypothetical protein; hypothetical protein 59384 10101319 Alide_4576 Alicycliphilus denitrificans BC hypothetical protein YP_004124023.1 58998 D 596153 CDS YP_004124024.1 319760085 10101320 59673..59894 1 NC_014908.1 KEGG: tmt:Tmath_0092 PKD domain containing protein; hypothetical protein 59894 10101320 Alide_4577 Alicycliphilus denitrificans BC hypothetical protein YP_004124024.1 59673 D 596153 CDS YP_004124025.1 319760086 10101321 59911..60132 1 NC_014908.1 KEGG: rpf:Rpic12D_4785 hypothetical protein; hypothetical protein 60132 10101321 Alide_4578 Alicycliphilus denitrificans BC hypothetical protein YP_004124025.1 59911 D 596153 CDS YP_004124026.1 319760087 10101322 60423..61022 1 NC_014908.1 KEGG: pna:Pnap_4409 hypothetical protein; hypothetical protein 61022 10101322 Alide_4579 Alicycliphilus denitrificans BC hypothetical protein YP_004124026.1 60423 D 596153 CDS YP_004124027.1 319760088 10101323 61034..61258 1 NC_014908.1 KEGG: rpf:Rpic12D_4779 hypothetical protein; hypothetical protein 61258 10101323 Alide_4580 Alicycliphilus denitrificans BC hypothetical protein YP_004124027.1 61034 D 596153 CDS YP_004124028.1 319760089 10101324 61314..61682 1 NC_014908.1 KEGG: rha:RHA1_ro03242 transcriptional regulator; hypothetical protein 61682 10101324 Alide_4581 Alicycliphilus denitrificans BC hypothetical protein YP_004124028.1 61314 D 596153 CDS YP_004124029.1 319760090 10101325 61700..61897 1 NC_014908.1 hypothetical protein 61897 10101325 Alide_4582 Alicycliphilus denitrificans BC hypothetical protein YP_004124029.1 61700 D 596153 CDS YP_004124030.1 319760091 10101326 62188..62394 1 NC_014908.1 KEGG: bxe:Bxe_A3093 hypothetical protein; hypothetical protein 62394 10101326 Alide_4583 Alicycliphilus denitrificans BC hypothetical protein YP_004124030.1 62188 D 596153 CDS YP_004124031.1 319760092 10101327 62409..62705 1 NC_014908.1 KEGG: rer:RER_07640 ceramidase; hypothetical protein 62705 10101327 Alide_4584 Alicycliphilus denitrificans BC hypothetical protein YP_004124031.1 62409 D 596153 CDS YP_004124032.1 319760093 10101328 63071..63235 1 NC_014908.1 KEGG: mvu:Metvu_1533 RNA polymerase RPB1 domain 5; hypothetical protein 63235 10101328 Alide_4585 Alicycliphilus denitrificans BC hypothetical protein YP_004124032.1 63071 D 596153 CDS YP_004124033.1 319760094 10101329 63248..63625 1 NC_014908.1 KEGG: cel:F49A5.6 THaumatiN family; hypothetical protein 63625 10101329 Alide_4586 Alicycliphilus denitrificans BC hypothetical protein YP_004124033.1 63248 D 596153 CDS YP_004124034.1 319760095 10101330 63637..63891 1 NC_014908.1 KEGG: pjd:Pjdr2_4457 Ham1 family protein; hypothetical protein 63891 10101330 Alide_4587 Alicycliphilus denitrificans BC hypothetical protein YP_004124034.1 63637 D 596153 CDS YP_004124035.1 319760096 10101331 64281..64520 1 NC_014908.1 KEGG: hch:HCH_04829 hypothetical protein; hypothetical protein 64520 10101331 Alide_4588 Alicycliphilus denitrificans BC hypothetical protein YP_004124035.1 64281 D 596153 CDS YP_004124036.1 319760097 10101332 64600..64806 1 NC_014908.1 KEGG: bxe:Bxe_A3093 hypothetical protein; hypothetical protein 64806 10101332 Alide_4589 Alicycliphilus denitrificans BC hypothetical protein YP_004124036.1 64600 D 596153 CDS YP_004124037.1 319760098 10101333 64822..65058 1 NC_014908.1 KEGG: bge:BC1002_4953 hypothetical protein; hypothetical protein 65058 10101333 Alide_4590 Alicycliphilus denitrificans BC hypothetical protein YP_004124037.1 64822 D 596153 CDS YP_004124038.1 319760099 10101334 65154..65318 1 NC_014908.1 KEGG: mvu:Metvu_1533 RNA polymerase RPB1 domain 5; hypothetical protein 65318 10101334 Alide_4591 Alicycliphilus denitrificans BC hypothetical protein YP_004124038.1 65154 D 596153 CDS YP_004124039.1 319760100 10101335 complement(66153..67667) 1 NC_014908.1 KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66 67667 10101335 Alide_4592 Alicycliphilus denitrificans BC transposase IS66 YP_004124039.1 66153 R 596153 CDS YP_004124040.1 319760101 10101336 complement(67750..68082) 1 NC_014908.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 68082 10101336 Alide_4593 Alicycliphilus denitrificans BC IS66 Orf2 family protein YP_004124040.1 67750 R 596153 CDS YP_004124041.1 319760102 10101337 complement(68079..68507) 1 NC_014908.1 PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein 68507 10101337 Alide_4594 Alicycliphilus denitrificans BC transposase IS3/IS911 family protein YP_004124041.1 68079 R 596153 CDS YP_004124042.1 319760103 10101338 68567..69163 1 NC_014908.1 KEGG: ajs:Ajs_4213 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase like enzyme 69163 10101338 Alide_4595 Alicycliphilus denitrificans BC phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase like enzyme YP_004124042.1 68567 D 596153 CDS YP_004124043.1 319760104 10101339 69216..69581 1 NC_014908.1 KEGG: lbz:LbrM34_V2.1910 hypothetical protein; hypothetical protein 69581 10101339 Alide_4596 Alicycliphilus denitrificans BC hypothetical protein YP_004124043.1 69216 D 596153 CDS YP_004124044.1 319760105 10101340 69620..70567 1 NC_014908.1 PFAM: peptidase S49; KEGG: eba:p1B184 periplasmic serine protease (ClpP class); peptidase S49 70567 10101340 Alide_4597 Alicycliphilus denitrificans BC peptidase S49 YP_004124044.1 69620 D 596153 CDS YP_004124045.1 319760106 10101341 70582..70860 1 NC_014908.1 KEGG: aeh:Mlg_1551 hypothetical protein; hypothetical protein 70860 10101341 Alide_4598 Alicycliphilus denitrificans BC hypothetical protein YP_004124045.1 70582 D 596153 CDS YP_004124046.1 319760107 10101342 complement(70956..71171) 1 NC_014908.1 KEGG: glo:Glov_1032 xanthine/uracil/vitamin C permease; hypothetical protein 71171 10101342 Alide_4599 Alicycliphilus denitrificans BC hypothetical protein YP_004124046.1 70956 R 596153 CDS YP_004124047.1 319760108 10101343 complement(71289..71621) 1 NC_014908.1 KEGG: clu:CLUG_01384 hypothetical protein; hypothetical protein 71621 10101343 Alide_4600 Alicycliphilus denitrificans BC hypothetical protein YP_004124047.1 71289 R 596153 CDS YP_004124048.1 319760109 10101344 complement(71767..72948) 1 NC_014908.1 PFAM: transposase Tn3 family protein; KEGG: aau:AAur_pTC10224 IS1071, transposase; transposase Tn3 family protein 72948 10101344 Alide_4601 Alicycliphilus denitrificans BC transposase Tn3 family protein YP_004124048.1 71767 R 596153 CDS YP_004124049.1 319760110 10101345 complement(72984..76013) 1 NC_014908.1 PFAM: transposase Tn3 family protein; KEGG: rpf:Rpic12D_4478 transposase Tn3 family protein; transposase Tn3 family protein 76013 10101345 Alide_4602 Alicycliphilus denitrificans BC transposase Tn3 family protein YP_004124049.1 72984 R 596153 CDS YP_004124050.1 319760111 10101347 76841..77119 1 NC_014908.1 KEGG: rme:Rmet_6342 antitoxin of a toxin/antitoxin system; antitoxin of a toxin/antitoxin system 77119 10101347 Alide_4604 Alicycliphilus denitrificans BC antitoxin of a toxin/antitoxin system YP_004124050.1 76841 D 596153 CDS YP_004124051.1 319760112 10101348 77116..77400 1 NC_014908.1 KEGG: tin:Tint_3241 addiction module toxin, RelE/StbE family; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module toxin, RelE/StbE family 77400 10101348 Alide_4605 Alicycliphilus denitrificans BC addiction module toxin, RelE/StbE family YP_004124051.1 77116 D 596153 CDS YP_004124052.1 319760113 10101349 77807..78367 1 NC_014908.1 manually curated; KEGG: rme:Rmet_6340 hypothetical protein; hypothetical protein 78367 10101349 Alide_4606 Alicycliphilus denitrificans BC hypothetical protein YP_004124052.1 77807 D 596153 CDS YP_004124053.1 319760114 10101350 78375..78857 1 NC_014908.1 KEGG: rme:Rmet_6339 cupin 2 conserved barrel domain-containing protein; manually curated; PFAM: Cupin 2 conserved barrel domain protein; Cupin 2 conserved barrel domain protein 78857 10101350 Alide_4607 Alicycliphilus denitrificans BC Cupin 2 conserved barrel domain protein YP_004124053.1 78375 D 596153 CDS YP_004124054.1 319760115 10101351 79354..80313 1 NC_014908.1 KEGG: bgl:bglu_2p1110 hypothetical protein; hypothetical protein 80313 10101351 Alide_4608 Alicycliphilus denitrificans BC hypothetical protein YP_004124054.1 79354 D 596153 CDS YP_004124055.1 319760116 10101352 complement(80638..81177) 1 NC_014908.1 KEGG: rfr:Rfer_3089 molybdopterin-guanine dinucleotide biosynthesis protein B; manually curated; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B 81177 10101352 Alide_4609 Alicycliphilus denitrificans BC molybdopterin-guanine dinucleotide biosynthesis protein B YP_004124055.1 80638 R 596153 CDS YP_004124056.1 319760117 10101353 complement(81247..81564) 1 NC_014908.1 PFAM: cytochrome c class I; KEGG: rme:Rmet_3424 cytochrome c, class I; cytochrome c class I 81564 10101353 Alide_4610 Alicycliphilus denitrificans BC cytochrome c class I YP_004124056.1 81247 R 596153 CDS YP_004124057.1 319760118 10101354 complement(81691..82410) 1 NC_014908.1 TIGRFAM: DMSO reductase family type II enzyme, heme b subunit; KEGG: hla:Hlac_1337 DMSO reductase family type II enzyme, heme B subunit; PFAM: Cytochrome c-552/DMSO reductase-like, haem-binding domain; DMSO reductase family type II enzyme, heme b subunit 82410 10101354 Alide_4611 Alicycliphilus denitrificans BC DMSO reductase family type II enzyme, heme b subunit YP_004124057.1 81691 R 596153 CDS YP_004124058.1 319760119 10101355 complement(82407..82988) 1 NC_014908.1 KEGG: dol:Dole_0197 delta-subunit of ethylbenzene dehydrogenase; TIGRFAM: DMSO reductase family type II enzyme chaperone; PFAM: TorD-like chaperone; DMSO reductase family type II enzyme chaperone 82988 10101355 Alide_4612 Alicycliphilus denitrificans BC DMSO reductase family type II enzyme chaperone YP_004124058.1 82407 R 596153 CDS YP_004124059.1 319760120 10101356 complement(82985..83971) 1 NC_014908.1 TIGRFAM: DMSO reductase family type II enzyme, iron-sulfur subunit; KEGG: pmx:PERMA_0658 respiratory nitrate reductase 1 beta chain (nitrate reductase A subunit beta) (quinol-nitrate oxidoreductase subunitbeta); DMSO reductase family type II enzyme, iron-sulfur subunit 83971 10101356 Alide_4613 Alicycliphilus denitrificans BC DMSO reductase family type II enzyme, iron-sulfur subunit YP_004124059.1 82985 R 596153 CDS YP_004124060.1 319760121 10101357 complement(83982..86726) 1 NC_014908.1 KEGG: pmx:PERMA_0657 dimethylsulfide dehydrogenase subunit alpha (dimethylsulfide dehydrogenase molybdenum subunit) (DMS DH alphasubunit) (DMS DH molybdenum subunit); TIGRFAM: DMSO reductase family type II enzyme, molybdopterin subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; DMSO reductase family type II enzyme, molybdopterin subunit 86726 10101357 Alide_4614 Alicycliphilus denitrificans BC DMSO reductase family type II enzyme, molybdopterin subunit YP_004124060.1 83982 R 596153 CDS YP_004124061.1 319760122 10101358 87047..87904 1 NC_014908.1 KEGG: dar:Daro_2580 chlorite dismutase; manually curated; PFAM: Chlorite dismutase; Chlorite dismutase 87904 10101358 Alide_4615 Alicycliphilus denitrificans BC Chlorite dismutase YP_004124061.1 87047 D 596153 CDS YP_004124062.1 319760123 10101359 88041..88328 1 NC_014908.1 TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: pol:Bpro_2731 hypothetical protein; pentapeptide MXKDX repeat protein 88328 10101359 Alide_4616 Alicycliphilus denitrificans BC pentapeptide MXKDX repeat protein YP_004124062.1 88041 D 596153 CDS YP_004124063.1 319760124 10101361 88673..89044 1 NC_014908.1 KEGG: kpn:KPN_pKPN5p08243 hypothetical protein; manually curated; PFAM: Cupin 2 conserved barrel domain protein; Cupin 2 conserved barrel domain protein 89044 10101361 Alide_4618 Alicycliphilus denitrificans BC Cupin 2 conserved barrel domain protein YP_004124063.1 88673 D 596153 CDS YP_004124064.1 319760125 10101362 89415..90386 1 NC_014908.1 PFAM: integrase family protein; KEGG: eba:p2A217 putative integrase; integrase family protein 90386 10101362 Alide_4619 Alicycliphilus denitrificans BC integrase family protein YP_004124064.1 89415 D 596153 CDS YP_004124065.1 319760126 10101363 complement(90406..91161) 1 NC_014908.1 KEGG: bge:BC1002_7025 IstB domain protein ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; IstB ATP binding domain protein; SMART: AAA ATPase; IstB domain protein ATP-binding protein 91161 10101363 Alide_4620 Alicycliphilus denitrificans BC IstB domain protein ATP-binding protein YP_004124065.1 90406 R 596153 CDS YP_004124066.1 319760127 10101364 complement(91181..92719) 1 NC_014908.1 PFAM: Integrase catalytic region; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_A3740 putative transposase; Integrase catalytic region protein 92719 10101364 Alide_4621 Alicycliphilus denitrificans BC Integrase catalytic region protein YP_004124066.1 91181 R 596153 CDS YP_004124067.1 319760128 10101365 complement(93023..93919) 1 NC_014908.1 PFAM: transposase Tn3 family protein; KEGG: aau:AAur_pTC10224 IS1071, transposase; transposase Tn3 family protein 93919 10101365 Alide_4622 Alicycliphilus denitrificans BC transposase Tn3 family protein YP_004124067.1 93023 R 596153 CDS YP_004124068.1 319760129 10101366 complement(94890..96803) 1 NC_014908.1 PFAM: integrase family protein; KEGG: rpf:Rpic12D_5076 integrase family protein; integrase family protein 96803 10101366 Alide_4623 Alicycliphilus denitrificans BC integrase family protein YP_004124068.1 94890 R 596153 CDS YP_004124069.1 319760130 10101367 complement(97121..97504) 1 NC_014908.1 KEGG: pna:Pnap_4414 hypothetical protein; hypothetical protein 97504 10101367 Alide_4624 Alicycliphilus denitrificans BC hypothetical protein YP_004124069.1 97121 R 596153 CDS YP_004124070.1 319760131 10101368 complement(97530..100289) 1 NC_014908.1 KEGG: maq:Maqu_4078 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase; type III restriction protein res subunit 100289 10101368 Alide_4625 Alicycliphilus denitrificans BC type III restriction protein res subunit YP_004124070.1 97530 R 596153 CDS YP_004124071.1 319760132 10101369 complement(100286..102214) 1 NC_014908.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: maq:Maqu_4077 DNA methylase N-4/N-6 domain-containing protein; DNA methylase N-4/N-6 domain protein 102214 10101369 Alide_4626 Alicycliphilus denitrificans BC DNA methylase N-4/N-6 domain protein YP_004124071.1 100286 R 596153 CDS YP_004124072.1 319760133 10101370 complement(102214..102537) 1 NC_014908.1 PFAM: PemK family protein; KEGG: xcv:XCVc0002 putative PemK-like protein; PemK family protein 102537 10101370 Alide_4627 Alicycliphilus denitrificans BC PemK family protein YP_004124072.1 102214 R 596153 CDS YP_004124073.1 319760134 10101371 complement(102534..102755) 1 NC_014908.1 KEGG: xcv:XCVc0003 hypothetical protein; hypothetical protein 102755 10101371 Alide_4628 Alicycliphilus denitrificans BC hypothetical protein YP_004124073.1 102534 R 596153 CDS YP_004124074.1 319760135 10101372 102831..103667 1 NC_014908.1 PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: eba:ebA67 hypothetical protein; restriction endonuclease 103667 10101372 Alide_4629 Alicycliphilus denitrificans BC restriction endonuclease YP_004124074.1 102831 D 596153 CDS YP_004124075.1 319760136 10101373 complement(103685..104056) 1 NC_014908.1 KEGG: ajs:Ajs_1589 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 104056 10101373 Alide_4630 Alicycliphilus denitrificans BC histone family protein DNA-binding protein YP_004124075.1 103685 R 596153 CDS YP_004124076.1 319760137 10101374 104214..104666 1 NC_014908.1 KEGG: vap:Vapar_5860 transcriptional regulator, XRE family; transcriptional regulator, XRE family 104666 10101374 Alide_4631 Alicycliphilus denitrificans BC transcriptional regulator, XRE family YP_004124076.1 104214 D 596153 CDS YP_004124077.1 319760138 10101375 complement(104677..105234) 1 NC_014908.1 KEGG: reu:Reut_A2370 hypothetical protein; hypothetical protein 105234 10101375 Alide_4632 Alicycliphilus denitrificans BC hypothetical protein YP_004124077.1 104677 R 596153 CDS YP_004124078.1 319760139 10101376 105502..107247 1 NC_014908.1 PFAM: transposase Tn3 family protein; KEGG: aau:AAur_pTC10224 IS1071, transposase; transposase Tn3 family protein 107247 10101376 Alide_4633 Alicycliphilus denitrificans BC transposase Tn3 family protein YP_004124078.1 105502 D 596153 CDS YP_004124079.1 319760140 10101377 complement(107675..108031) 1 NC_014908.1 KEGG: rme:Rmet_6339 cupin 2 conserved barrel domain-containing protein; manually curated; PFAM: Cupin 2 conserved barrel domain protein; Cupin 2 conserved barrel domain protein 108031 10101377 Alide_4634 Alicycliphilus denitrificans BC Cupin 2 conserved barrel domain protein YP_004124079.1 107675 R 596153 CDS YP_004124080.1 319760141 10101378 complement(108154..108726) 1 NC_014908.1 KEGG: rme:Rmet_6340 hypothetical protein; hypothetical protein 108726 10101378 Alide_4635 Alicycliphilus denitrificans BC hypothetical protein YP_004124080.1 108154 R 596153 CDS YP_004124081.1 319760142 10101379 complement(109133..109417) 1 NC_014908.1 KEGG: tin:Tint_3241 addiction module toxin, RelE/StbE family; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module toxin, RelE/StbE family 109417 10101379 Alide_4636 Alicycliphilus denitrificans BC addiction module toxin, RelE/StbE family YP_004124081.1 109133 R 596153 CDS YP_004124082.1 319760143 10101380 complement(109414..109692) 1 NC_014908.1 KEGG: rme:Rmet_6342 antitoxin of a toxin/antitoxin system; antitoxin of a toxin/antitoxin system 109692 10101380 Alide_4637 Alicycliphilus denitrificans BC antitoxin of a toxin/antitoxin system YP_004124082.1 109414 R 596153 CDS YP_004124083.1 319760144 10101381 109946..110524 1 NC_014908.1 PFAM: Resolvase domain; KEGG: rpf:Rpic12D_4479 resolvase domain protein; Resolvase domain protein 110524 10101381 Alide_4638 Alicycliphilus denitrificans BC Resolvase domain protein YP_004124083.1 109946 D 596153 CDS YP_004124084.1 319760145 10101384 complement(114221..114895) 1 NC_014908.1 PFAM: transposase Tn3 family protein; KEGG: aau:AAur_pTC10224 IS1071, transposase; transposase Tn3 family protein 114895 10101384 Alide_4641 Alicycliphilus denitrificans BC transposase Tn3 family protein YP_004124084.1 114221 R 596153 CDS YP_004124085.1 319760146 10101385 complement(115162..115413) 1 NC_014908.1 manually curated; KEGG: alv:Alvin_3256 Wgr; Wgr family protein 115413 10101385 Alide_4642 Alicycliphilus denitrificans BC Wgr family protein YP_004124085.1 115162 R 596153 CDS YP_004124086.1 319760147 10101386 116308..116775 1 NC_014908.1 KEGG: xca:xccb100_0185 cysteine desulfurase; hypothetical protein 116775 10101386 Alide_4643 Alicycliphilus denitrificans BC hypothetical protein YP_004124086.1 116308 D 596153 CDS YP_004124087.1 319760148 10101387 117039..117539 1 NC_014908.1 KEGG: oan:Oant_2921 AraC family transcriptional regulator; hypothetical protein 117539 10101387 Alide_4644 Alicycliphilus denitrificans BC hypothetical protein YP_004124087.1 117039 D 596153 CDS YP_004124088.1 319760149 10101388 complement(117756..118919) 1 NC_014908.1 PFAM: initiator RepB protein; KEGG: bmj:BMULJ_05362 replication protein; initiator RepB protein 118919 10101388 Alide_4645 Alicycliphilus denitrificans BC initiator RepB protein YP_004124088.1 117756 R 596153 CDS YP_004124676.1 319760739 10106510 206..1627 1 NC_014910.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: dia:Dtpsy_0001 chromosomal replication initiation protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein dnaa 1627 10106510 Alide_0001 Alicycliphilus denitrificans BC chromosomal replication initiator protein dnaa YP_004124676.1 206 D 596153 CDS YP_004124677.1 319760740 10102025 1754..2860 1 NC_014910.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: dia:Dtpsy_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 2860 10102025 Alide_0002 Alicycliphilus denitrificans BC DNA polymerase III subunit beta YP_004124677.1 1754 D 596153 CDS YP_004124678.1 319760741 10102026 2979..5561 1 NC_014910.1 TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; KEGG: dia:Dtpsy_0003 DNA gyrase, B subunit; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase, b subunit 5561 10102026 Alide_0003 Alicycliphilus denitrificans BC DNA gyrase, b subunit YP_004124678.1 2979 D 596153 CDS YP_004124679.1 319760742 10102027 5636..6049 1 NC_014910.1 PFAM: protein of unknown function UPF0153; KEGG: dia:Dtpsy_0006 protein of unknown function UPF0153; hypothetical protein 6049 10102027 Alide_0004 Alicycliphilus denitrificans BC hypothetical protein YP_004124679.1 5636 D 596153 CDS YP_004124680.1 319760743 10102028 complement(6074..7267) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_A2137 acyl-CoA transferase/carnitine dehydratase; l-carnitine dehydratase/bile acid-inducible protein f 7267 10102028 Alide_0005 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004124680.1 6074 R 596153 CDS YP_004124681.1 319760744 10102029 complement(7277..8134) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_A2138 enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase 8134 10102029 Alide_0006 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004124681.1 7277 R 596153 CDS YP_004124682.1 319760745 10102030 8188..9030 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reh:H16_A2139 LysR family transcriptional regulator; LysR family transcriptional regulator 9030 10102030 Alide_0007 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124682.1 8188 D 596153 CDS YP_004124683.1 319760746 10102031 complement(9027..10049) 1 NC_014910.1 KEGG: reh:H16_A2140 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein 10049 10102031 Alide_0008 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004124683.1 9027 R 596153 CDS YP_004124684.1 319760747 10102032 complement(10084..11856) 1 NC_014910.1 PFAM: protein of unknown function DUF1446; KEGG: reh:H16_A2141 hypothetical protein; hypothetical protein 11856 10102032 Alide_0009 Alicycliphilus denitrificans BC hypothetical protein YP_004124684.1 10084 R 596153 CDS YP_004124685.1 319760748 10102033 complement(11853..13865) 1 NC_014910.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: reh:H16_A2142 acetyl-CoA carboxylase alpha chain; carbamoyl-phosphate synthase l chain ATP-binding protein 13865 10102033 Alide_0010 Alicycliphilus denitrificans BC carbamoyl-phosphate synthase l chain ATP-binding protein YP_004124685.1 11853 R 596153 CDS YP_004124686.1 319760749 10102034 complement(13882..15045) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reh:H16_A2143 acyl-CoA dehydrogenase, long-chain specific; acyl-CoA dehydrogenase 15045 10102034 Alide_0011 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124686.1 13882 R 596153 CDS YP_004124687.1 319760750 10102035 complement(15177..16787) 1 NC_014910.1 KEGG: reh:H16_A2144 propionyl-CoA carboxylase beta chain; PFAM: carboxyl transferase; methylcrotonoyl-CoA carboxylase 16787 10102035 Alide_0012 Alicycliphilus denitrificans BC methylcrotonoyl-CoA carboxylase YP_004124687.1 15177 R 596153 CDS YP_004124688.1 319760751 10102036 complement(16899..17204) 1 NC_014910.1 PFAM: acylphosphatase; KEGG: ajs:Ajs_4152 acylphosphatase; acylphosphatase 17204 10102036 Alide_0013 Alicycliphilus denitrificans BC acylphosphatase YP_004124688.1 16899 R 596153 CDS YP_004124689.1 319760752 10102037 17232..17516 1 NC_014910.1 KEGG: ajs:Ajs_4153 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 17516 10102037 Alide_0014 Alicycliphilus denitrificans BC 4Fe-4S ferredoxin YP_004124689.1 17232 D 596153 CDS YP_004124690.1 319760753 10102038 17834..19219 1 NC_014910.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: ajs:Ajs_4155 homoserine dehydrogenase; homoserine dehydrogenase 19219 10102038 Alide_0015 Alicycliphilus denitrificans BC homoserine dehydrogenase YP_004124690.1 17834 D 596153 CDS YP_004124691.1 319760754 10102039 19379..21553 1 NC_014910.1 SMART: helicase c2; DEAD-like helicase; KEGG: ajs:Ajs_4158 ATP-dependent DNA helicase DinG; helicase c2 21553 10102039 Alide_0016 Alicycliphilus denitrificans BC helicase c2 YP_004124691.1 19379 D 596153 CDS YP_004124692.1 319760755 10102040 21566..22195 1 NC_014910.1 PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: ajs:Ajs_4160 DNA polymerase III, epsilon subunit; SMART: Exonuclease; DNA-directed DNA polymerase 22195 10102040 Alide_0017 Alicycliphilus denitrificans BC DNA-directed DNA polymerase YP_004124692.1 21566 D 596153 CDS YP_004124693.1 319760756 10102041 22262..22741 1 NC_014910.1 PFAM: NLP/P60 protein; KEGG: ajs:Ajs_0001 NLP/P60 protein; nlp/p60 protein 22741 10102041 Alide_0018 Alicycliphilus denitrificans BC nlp/p60 protein YP_004124693.1 22262 D 596153 CDS YP_004124694.1 319760757 10102042 22780..23883 1 NC_014910.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: ajs:Ajs_0002 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 23883 10102042 Alide_0019 Alicycliphilus denitrificans BC phospho-2-dehydro-3-deoxyheptonate aldolase YP_004124694.1 22780 D 596153 CDS YP_004124695.1 319760758 10102043 24476..28096 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; KEGG: dia:Dtpsy_0021 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; diguanylate cyclase 28096 10102043 Alide_0020 Alicycliphilus denitrificans BC diguanylate cyclase YP_004124695.1 24476 D 596153 CDS YP_004124696.1 319760759 10102044 complement(28163..28966) 1 NC_014910.1 KEGG: dia:Dtpsy_0022 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 28966 10102044 Alide_0021 Alicycliphilus denitrificans BC regulatory protein iclr YP_004124696.1 28163 R 596153 CDS YP_004124697.1 319760760 10102045 29153..30124 1 NC_014910.1 KEGG: ajs:Ajs_0005 hypothetical protein; hypothetical protein 30124 10102045 Alide_0022 Alicycliphilus denitrificans BC hypothetical protein YP_004124697.1 29153 D 596153 CDS YP_004124698.1 319760761 10102046 complement(30135..31163) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bpt:Bpet3280 hypothetical protein; acyl-CoA dehydrogenase 31163 10102046 Alide_0023 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124698.1 30135 R 596153 CDS YP_004124699.1 319760762 10102047 complement(31168..32355) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bpt:Bpet3281 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 32355 10102047 Alide_0024 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124699.1 31168 R 596153 CDS YP_004124700.1 319760763 10102048 complement(32402..33367) 1 NC_014910.1 KEGG: bpt:Bpet3282 secreted protein; secreted protein 33367 10102048 Alide_0025 Alicycliphilus denitrificans BC secreted protein YP_004124700.1 32402 R 596153 CDS YP_004124701.1 319760764 10102049 complement(33405..35498) 1 NC_014910.1 PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; CoA-binding domain protein; KEGG: rme:Rmet_0842 CoA-binding; ATPase 35498 10102049 Alide_0026 Alicycliphilus denitrificans BC ATPase YP_004124701.1 33405 R 596153 CDS YP_004124702.1 319760765 10102050 complement(35513..36313) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_0841 enoyl-CoA hydratase; enoyl-CoA hydratase 36313 10102050 Alide_0027 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004124702.1 35513 R 596153 CDS YP_004124703.1 319760766 10102051 36408..37172 1 NC_014910.1 KEGG: bpt:Bpet3285 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 37172 10102051 Alide_0028 Alicycliphilus denitrificans BC regulatory protein iclr YP_004124703.1 36408 D 596153 CDS YP_004124704.1 319760767 10102052 complement(37432..38037) 1 NC_014910.1 PFAM: Lipid A 3-O-deacylase-related; KEGG: dia:Dtpsy_0024 hypothetical protein; lipid a 3-o-deacylase-like protein 38037 10102052 Alide_0029 Alicycliphilus denitrificans BC lipid a 3-o-deacylase-like protein YP_004124704.1 37432 R 596153 CDS YP_004124705.1 319760768 10102053 complement(38152..38745) 1 NC_014910.1 KEGG: ajs:Ajs_0007 hypothetical protein; hypothetical protein 38745 10102053 Alide_0030 Alicycliphilus denitrificans BC hypothetical protein YP_004124705.1 38152 R 596153 CDS YP_004124706.1 319760769 10102054 38962..39903 1 NC_014910.1 PFAM: exonuclease RdgC; KEGG: ajs:Ajs_0008 recombination associated protein; exonuclease rdgc 39903 10102054 Alide_0031 Alicycliphilus denitrificans BC exonuclease rdgc YP_004124706.1 38962 D 596153 CDS YP_004124707.1 319760770 10102055 39923..41176 1 NC_014910.1 PFAM: nucleoside recognition domain protein; KEGG: ajs:Ajs_0012 nucleoside recognition domain-containing protein; nucleoside recognition domain-containing protein 41176 10102055 Alide_0032 Alicycliphilus denitrificans BC nucleoside recognition domain-containing protein YP_004124707.1 39923 D 596153 CDS YP_004124708.1 319760771 10102056 41657..41908 1 NC_014910.1 KEGG: dia:Dtpsy_0031 hypothetical protein; hypothetical protein 41908 10102056 Alide_0033 Alicycliphilus denitrificans BC hypothetical protein YP_004124708.1 41657 D 596153 CDS YP_004124709.1 319760772 10102057 complement(41877..43754) 1 NC_014910.1 KEGG: blt:Balat_0053 beta-galactosidase I; hypothetical protein 43754 10102057 Alide_0034 Alicycliphilus denitrificans BC hypothetical protein YP_004124709.1 41877 R 596153 CDS YP_004124710.1 319760773 10102058 complement(43852..44289) 1 NC_014910.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: dia:Dtpsy_0035 transcriptional regulator, MerR family; SMART: regulatory protein MerR; cu(i)-responsive transcriptional regulator 44289 10102058 Alide_0035 Alicycliphilus denitrificans BC cu(i)-responsive transcriptional regulator YP_004124710.1 43852 R 596153 CDS YP_004124711.1 319760774 10102059 complement(44286..44483) 1 NC_014910.1 PFAM: Heavy metal transport/detoxification protein; KEGG: dia:Dtpsy_0036 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 44483 10102059 Alide_0036 Alicycliphilus denitrificans BC heavy metal transport/detoxification protein YP_004124711.1 44286 R 596153 CDS YP_004124712.1 319760775 10102060 44653..46884 1 NC_014910.1 KEGG: dia:Dtpsy_0037 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase 46884 10102060 Alide_0037 Alicycliphilus denitrificans BC heavy metal translocating p-type atpase YP_004124712.1 44653 D 596153 CDS YP_004124713.1 319760776 10102061 47011..48660 1 NC_014910.1 KEGG: ajs:Ajs_0020 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 48660 10102061 Alide_0038 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004124713.1 47011 D 596153 CDS YP_004124714.1 319760777 10102062 complement(48816..51911) 1 NC_014910.1 KEGG: aav:Aave_0038 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, czca family 51911 10102062 Alide_0039 Alicycliphilus denitrificans BC heavy metal efflux pump, czca family YP_004124714.1 48816 R 596153 CDS YP_004124715.1 319760778 10102063 complement(51908..53161) 1 NC_014910.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: aav:Aave_0039 RND family efflux transporter MFP subunit; efflux transporter, rnd family, mfp subunit 53161 10102063 Alide_0040 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004124715.1 51908 R 596153 CDS YP_004124716.1 319760779 10102064 complement(53193..54434) 1 NC_014910.1 PFAM: outer membrane efflux protein; KEGG: aav:Aave_0040 outer membrane efflux protein; outer membrane efflux protein 54434 10102064 Alide_0041 Alicycliphilus denitrificans BC outer membrane efflux protein YP_004124716.1 53193 R 596153 CDS YP_004124717.1 319760780 10102065 54567..55292 1 NC_014910.1 KEGG: aav:Aave_0041 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 55292 10102065 Alide_0042 Alicycliphilus denitrificans BC response regulator receiver YP_004124717.1 54567 D 596153 CDS YP_004124718.1 319760781 10102066 55289..56716 1 NC_014910.1 KEGG: aav:Aave_0042 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 56716 10102066 Alide_0043 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004124718.1 55289 D 596153 CDS YP_004124719.1 319760782 10102067 complement(56742..57857) 1 NC_014910.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: dia:Dtpsy_0040 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 57857 10102067 Alide_0044 Alicycliphilus denitrificans BC NADH:flavin oxidoreductase YP_004124719.1 56742 R 596153 CDS YP_004124720.1 319760783 10102068 complement(57920..58528) 1 NC_014910.1 PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_0042 glutathione S-transferase domain protein; glutathione s-transferase domain-containing protein 58528 10102068 Alide_0045 Alicycliphilus denitrificans BC glutathione s-transferase domain-containing protein YP_004124720.1 57920 R 596153 CDS YP_004124721.1 319760784 10102069 complement(58561..58857) 1 NC_014910.1 PFAM: protein of unknown function UPF0153; KEGG: dia:Dtpsy_0043 protein of unknown function UPF0153; hypothetical protein 58857 10102069 Alide_0046 Alicycliphilus denitrificans BC hypothetical protein YP_004124721.1 58561 R 596153 CDS YP_004124722.1 319760785 10102070 complement(58864..59442) 1 NC_014910.1 PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_0044 NADPH-dependent FMN reductase; nadph-dependent fmn reductase 59442 10102070 Alide_0047 Alicycliphilus denitrificans BC nadph-dependent fmn reductase YP_004124722.1 58864 R 596153 CDS YP_004124723.1 319760786 10102071 59574..61553 1 NC_014910.1 manually curated; TIGRFAM: glucose inhibited division protein A; KEGG: dia:Dtpsy_0045 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: glucose-inhibited division protein A; glucose inhibited division protein a 61553 10102071 Alide_0048 Alicycliphilus denitrificans BC glucose inhibited division protein a YP_004124723.1 59574 D 596153 CDS YP_004124724.1 319760787 10102072 61537..61776 1 NC_014910.1 KEGG: pct:PC1_0787 hypothetical protein; hypothetical protein 61776 10102072 Alide_0049 Alicycliphilus denitrificans BC hypothetical protein YP_004124724.1 61537 D 596153 CDS YP_004124725.1 319760788 10102073 61769..62416 1 NC_014910.1 KEGG: dia:Dtpsy_0046 16S rRNA methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; methyltransferase GidB 62416 10102073 Alide_0050 Alicycliphilus denitrificans BC methyltransferase GidB YP_004124725.1 61769 D 596153 CDS YP_004124726.1 319760789 10102074 62453..63067 1 NC_014910.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dia:Dtpsy_0047 lysine exporter protein (LysE/YggA); lysine exporter protein (lyse/ygga) 63067 10102074 Alide_0051 Alicycliphilus denitrificans BC lysine exporter protein (lyse/ygga) YP_004124726.1 62453 D 596153 CDS YP_004124727.1 319760790 10102075 63076..63846 1 NC_014910.1 KEGG: dia:Dtpsy_0048 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 63846 10102075 Alide_0052 Alicycliphilus denitrificans BC cobyrinic acid ac-diamide synthase YP_004124727.1 63076 D 596153 CDS YP_004124728.1 319760791 10102076 63931..64473 1 NC_014910.1 PFAM: protein of unknown function DUF1234; KEGG: ajs:Ajs_0030 hypothetical protein; hypothetical protein 64473 10102076 Alide_0053 Alicycliphilus denitrificans BC hypothetical protein YP_004124728.1 63931 D 596153 CDS YP_004124729.1 319760792 10102077 64479..65396 1 NC_014910.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: aav:Aave_0056 chromosome segregation DNA-binding protein; SMART: ParB domain protein nuclease; parb-like partition protein 65396 10102077 Alide_0054 Alicycliphilus denitrificans BC parb-like partition protein YP_004124729.1 64479 D 596153 CDS YP_004124730.1 319760793 10102078 65421..66200 1 NC_014910.1 KEGG: ajs:Ajs_0032 methyltransferase type 12; type 12 methyltransferase 66200 10102078 Alide_0055 Alicycliphilus denitrificans BC type 12 methyltransferase YP_004124730.1 65421 D 596153 CDS YP_004124731.1 319760794 10102079 66260..67300 1 NC_014910.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein 67300 10102079 Alide_0056 Alicycliphilus denitrificans BC peptidoglycan-binding domain-containing protein YP_004124731.1 66260 D 596153 CDS YP_004124732.1 319760795 10102080 complement(67380..68285) 1 NC_014910.1 SMART: Helix-turn-helix, AraC domain; KEGG: dia:Dtpsy_0054 transcriptional regulator, AraC family; AraC family transcriptional regulator 68285 10102080 Alide_0057 Alicycliphilus denitrificans BC AraC family transcriptional regulator YP_004124732.1 67380 R 596153 CDS YP_004124733.1 319760796 10102081 68345..69610 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_0055 major facilitator superfamily MFS_1; major facilitator superfamily protein 69610 10102081 Alide_0058 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004124733.1 68345 D 596153 CDS YP_004124734.1 319760797 10102082 complement(69612..70421) 1 NC_014910.1 PFAM: MscS Mechanosensitive ion channel; KEGG: bpy:Bphyt_0752 MscS mechanosensitive ion channel; mscs mechanosensitive ion channel 70421 10102082 Alide_0059 Alicycliphilus denitrificans BC mscs mechanosensitive ion channel YP_004124734.1 69612 R 596153 CDS YP_004124735.1 319760798 10102083 70500..70595 1 NC_014910.1 hypothetical protein 70595 10102083 Alide_0060 Alicycliphilus denitrificans BC hypothetical protein YP_004124735.1 70500 D 596153 CDS YP_004124736.1 319760799 10102084 complement(70620..72044) 1 NC_014910.1 PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_0040 fis family transcriptional regulator; fad linked oxidase domain-containing protein 72044 10102084 Alide_0061 Alicycliphilus denitrificans BC fad linked oxidase domain-containing protein YP_004124736.1 70620 R 596153 CDS YP_004124737.1 319760800 10102085 complement(72821..73033) 1 NC_014910.1 KEGG: shi:Shel_23880 hypothetical protein; hypothetical protein 73033 10102085 Alide_0062 Alicycliphilus denitrificans BC hypothetical protein YP_004124737.1 72821 R 596153 CDS YP_004124738.1 319760801 10102086 complement(73036..73581) 1 NC_014910.1 KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein; phage virion morphogenesis protein 73581 10102086 Alide_0063 Alicycliphilus denitrificans BC phage virion morphogenesis protein YP_004124738.1 73036 R 596153 CDS YP_004124739.1 319760802 10102087 complement(73688..74890) 1 NC_014910.1 PFAM: head morphogenesis protein SPP1 gp7; KEGG: bpt:Bpet4409 F protein (gpF) (protein GP30); head morphogenesis protein spp1 gp7 74890 10102087 Alide_0064 Alicycliphilus denitrificans BC head morphogenesis protein spp1 gp7 YP_004124739.1 73688 R 596153 CDS YP_004124740.1 319760803 10102088 complement(74883..76379) 1 NC_014910.1 PFAM: protein of unknown function DUF935; KEGG: rsc:RCFBP_11714 hypothetical protein; hypothetical protein 76379 10102088 Alide_0065 Alicycliphilus denitrificans BC hypothetical protein YP_004124740.1 74883 R 596153 CDS YP_004124741.1 319760804 10102089 complement(76376..77050) 1 NC_014910.1 KEGG: rce:RC1_1112 terminase large subunit; hypothetical protein 77050 10102089 Alide_0066 Alicycliphilus denitrificans BC hypothetical protein YP_004124741.1 76376 R 596153 CDS YP_004124742.1 319760805 10102090 complement(77062..77247) 1 NC_014910.1 KEGG: bps:BPSL1153 hypothetical protein; hypothetical protein 77247 10102090 Alide_0067 Alicycliphilus denitrificans BC hypothetical protein YP_004124742.1 77062 R 596153 CDS YP_004124743.1 319760806 10102091 complement(77251..77721) 1 NC_014910.1 KEGG: cvi:CV_2153 hypothetical protein; hypothetical protein 77721 10102091 Alide_0068 Alicycliphilus denitrificans BC hypothetical protein YP_004124743.1 77251 R 596153 CDS YP_004124744.1 319760807 10102092 77965..78771 1 NC_014910.1 KEGG: aav:Aave_4097 hypothetical protein; hypothetical protein 78771 10102092 Alide_0069 Alicycliphilus denitrificans BC hypothetical protein YP_004124744.1 77965 D 596153 CDS YP_004124745.1 319760808 10102093 78805..79977 1 NC_014910.1 KEGG: pna:Pnap_2245 hypothetical protein; hypothetical protein 79977 10102093 Alide_0070 Alicycliphilus denitrificans BC hypothetical protein YP_004124745.1 78805 D 596153 CDS YP_004124746.1 319760809 10102094 79986..80393 1 NC_014910.1 KEGG: scl:sce2651 carbohydrate ABC transporter; hypothetical protein 80393 10102094 Alide_0071 Alicycliphilus denitrificans BC hypothetical protein YP_004124746.1 79986 D 596153 CDS YP_004124747.1 319760810 10102095 80393..80824 1 NC_014910.1 KEGG: aav:Aave_4094 hypothetical protein; hypothetical protein 80824 10102095 Alide_0072 Alicycliphilus denitrificans BC hypothetical protein YP_004124747.1 80393 D 596153 CDS YP_004124748.1 319760811 10102096 80835..82826 1 NC_014910.1 KEGG: aav:Aave_4093 hypothetical protein; hypothetical protein 82826 10102096 Alide_0073 Alicycliphilus denitrificans BC hypothetical protein YP_004124748.1 80835 D 596153 CDS YP_004124749.1 319760812 10102097 82819..83040 1 NC_014910.1 KEGG: pna:Pnap_2241 hypothetical protein; hypothetical protein 83040 10102097 Alide_0074 Alicycliphilus denitrificans BC hypothetical protein YP_004124749.1 82819 D 596153 CDS YP_004124750.1 319760813 10102098 83191..83982 1 NC_014910.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: aav:Aave_4108 D12 class N6 adenine-specific DNA methyltransferase; d12 class n6 adenine-specific DNA methyltransferase 83982 10102098 Alide_0075 Alicycliphilus denitrificans BC d12 class n6 adenine-specific DNA methyltransferase YP_004124750.1 83191 D 596153 CDS YP_004124751.1 319760814 10102100 84303..84878 1 NC_014910.1 TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: dia:Dtpsy_0063 ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP/cobalamin adenosyltransferase 84878 10102100 Alide_0077 Alicycliphilus denitrificans BC ATP/cobalamin adenosyltransferase YP_004124751.1 84303 D 596153 CDS YP_004124752.1 319760815 10102101 complement(84939..85361) 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0044 hypothetical protein; thioesterase superfamily protein 85361 10102101 Alide_0078 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004124752.1 84939 R 596153 CDS YP_004124753.1 319760816 10102102 complement(85444..86910) 1 NC_014910.1 TIGRFAM: succinate CoA transferase; KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 86910 10102102 Alide_0079 Alicycliphilus denitrificans BC succinate CoA transferase YP_004124753.1 85444 R 596153 CDS YP_004124754.1 319760817 10102103 87122..87856 1 NC_014910.1 KEGG: dia:Dtpsy_0067 hypothetical protein; hypothetical protein 87856 10102103 Alide_0080 Alicycliphilus denitrificans BC hypothetical protein YP_004124754.1 87122 D 596153 CDS YP_004124755.1 319760818 10102104 87911..88816 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_5369 LysR family transcriptional regulator; LysR family transcriptional regulator 88816 10102104 Alide_0081 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124755.1 87911 D 596153 CDS YP_004124756.1 319760819 10102105 88941..89951 1 NC_014910.1 KEGG: reu:Reut_B4598 hypothetical protein; hypothetical protein 89951 10102105 Alide_0082 Alicycliphilus denitrificans BC hypothetical protein YP_004124756.1 88941 D 596153 CDS YP_004124757.1 319760820 10102106 90000..90806 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB2766 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 90806 10102106 Alide_0083 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004124757.1 90000 D 596153 CDS YP_004124758.1 319760821 10102107 90808..91569 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_0736 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 91569 10102107 Alide_0084 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004124758.1 90808 D 596153 CDS YP_004124759.1 319760822 10102108 91601..92116 1 NC_014910.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_2144 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 92116 10102108 Alide_0085 Alicycliphilus denitrificans BC carboxymuconolactone decarboxylase YP_004124759.1 91601 D 596153 CDS YP_004124760.1 319760823 10102109 complement(92123..93409) 1 NC_014910.1 KEGG: ajs:Ajs_0048 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 93409 10102109 Alide_0086 Alicycliphilus denitrificans BC uracil-xanthine permease YP_004124760.1 92123 R 596153 CDS YP_004124761.1 319760824 10102110 93561..94271 1 NC_014910.1 TIGRFAM: methyltransferase FkbM family; KEGG: sna:Snas_6312 methyltransferase FkbM family; methyltransferase fkbm family 94271 10102110 Alide_0087 Alicycliphilus denitrificans BC methyltransferase fkbm family YP_004124761.1 93561 D 596153 CDS YP_004124762.1 319760825 10102111 complement(94398..95666) 1 NC_014910.1 KEGG: ajs:Ajs_0052 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; ubiquinone biosynthesis hydroxylase, ubih/ubif/visc/coq6 family 95666 10102111 Alide_0088 Alicycliphilus denitrificans BC ubiquinone biosynthesis hydroxylase, ubih/ubif/visc/coq6 family YP_004124762.1 94398 R 596153 CDS YP_004124763.1 319760826 10102112 95836..97911 1 NC_014910.1 KEGG: dia:Dtpsy_0074 acetoacetyl-CoA synthetase; TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; acetoacetyl-CoA synthase 97911 10102112 Alide_0089 Alicycliphilus denitrificans BC acetoacetyl-CoA synthase YP_004124763.1 95836 D 596153 CDS YP_004124764.1 319760827 10102113 complement(97943..98872) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0055 LysR family transcriptional regulator; LysR family transcriptional regulator 98872 10102113 Alide_0090 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124764.1 97943 R 596153 CDS YP_004124765.1 319760828 10102114 98988..99974 1 NC_014910.1 KEGG: ajs:Ajs_0056 hypothetical protein; hypothetical protein 99974 10102114 Alide_0091 Alicycliphilus denitrificans BC hypothetical protein YP_004124765.1 98988 D 596153 CDS YP_004124766.1 319760829 10102115 100000..101157 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 101157 10102115 Alide_0092 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124766.1 100000 D 596153 CDS YP_004124767.1 319760830 10102116 101177..102202 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0062 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 102202 10102116 Alide_0093 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124767.1 101177 D 596153 CDS YP_004124768.1 319760831 10102117 102308..103096 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0063 enoyl-CoA hydratase; enoyl-CoA hydratase 103096 10102117 Alide_0094 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004124768.1 102308 D 596153 CDS YP_004124769.1 319760832 10102118 103126..103749 1 NC_014910.1 manually curated; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; KEGG: dia:Dtpsy_0083 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; cdp-diacylglycerol/serine o-phosphatidyltransferase 103749 10102118 Alide_0095 Alicycliphilus denitrificans BC cdp-diacylglycerol/serine o-phosphatidyltransferase YP_004124769.1 103126 D 596153 CDS YP_004124770.1 319760833 10102119 103858..106059 1 NC_014910.1 manually curated; TIGRFAM: TonB-dependent siderophore receptor; KEGG: neu:NE2433 TonB-dependent receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; tonb-dependent siderophore receptor 106059 10102119 Alide_0096 Alicycliphilus denitrificans BC tonb-dependent siderophore receptor YP_004124770.1 103858 D 596153 CDS YP_004124771.1 319760834 10102120 106062..107231 1 NC_014910.1 KEGG: neu:NE2432 hypothetical protein; hypothetical protein 107231 10102120 Alide_0097 Alicycliphilus denitrificans BC hypothetical protein YP_004124771.1 106062 D 596153 CDS YP_004124772.1 319760835 10102121 107228..107437 1 NC_014910.1 KEGG: rpt:Rpal_2080 hypothetical protein; hypothetical protein 107437 10102121 Alide_0098 Alicycliphilus denitrificans BC hypothetical protein YP_004124772.1 107228 D 596153 CDS YP_004124773.1 319760836 10102122 107604..108365 1 NC_014910.1 KEGG: dia:Dtpsy_0084 septum site-determining protein MinC; TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; septum site-determining protein minc 108365 10102122 Alide_0099 Alicycliphilus denitrificans BC septum site-determining protein minc YP_004124773.1 107604 D 596153 CDS YP_004124774.1 319760837 10102123 108420..109235 1 NC_014910.1 TIGRFAM: septum site-determining protein MinD; KEGG: dia:Dtpsy_0085 septum site-determining protein MinD; septum site-determining protein mind 109235 10102123 Alide_0100 Alicycliphilus denitrificans BC septum site-determining protein mind YP_004124774.1 108420 D 596153 CDS YP_004124775.1 319760838 10102124 109242..109511 1 NC_014910.1 KEGG: dia:Dtpsy_0086 cell division topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; cell division topological specificity factor mine 109511 10102124 Alide_0101 Alicycliphilus denitrificans BC cell division topological specificity factor mine YP_004124775.1 109242 D 596153 CDS YP_004124776.1 319760839 10102125 complement(109535..110473) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_1015 LysR family transcriptional regulator; LysR family transcriptional regulator 110473 10102125 Alide_0102 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124776.1 109535 R 596153 CDS YP_004124777.1 319760840 10102126 110587..111564 1 NC_014910.1 KEGG: pol:Bpro_4513 hypothetical protein; hypothetical protein 111564 10102126 Alide_0103 Alicycliphilus denitrificans BC hypothetical protein YP_004124777.1 110587 D 596153 CDS YP_004124778.1 319760841 10102127 111592..112755 1 NC_014910.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mes:Meso_4537 galactonate dehydratase; mandelate racemase/muconate lactonizing protein 112755 10102127 Alide_0104 Alicycliphilus denitrificans BC mandelate racemase/muconate lactonizing protein YP_004124778.1 111592 D 596153 CDS YP_004124779.1 319760842 10102128 complement(112786..113325) 1 NC_014910.1 KEGG: ajs:Ajs_0068 flavin reductase domain-containing protein; manually curated; PFAM: flavin reductase domain protein FMN-binding; flavin reductase domain-containing protein fmn-binding protein 113325 10102128 Alide_0105 Alicycliphilus denitrificans BC flavin reductase domain-containing protein fmn-binding protein YP_004124779.1 112786 R 596153 CDS YP_004124780.1 319760843 10102129 113432..114208 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_0088 alpha/beta hydrolase fold protein; alpha/beta hydrolase 114208 10102129 Alide_0106 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004124780.1 113432 D 596153 CDS YP_004124781.1 319760844 10102130 114282..114947 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: ajs:Ajs_0073 TetR family transcriptional regulator; regulatory protein tetr 114947 10102130 Alide_0107 Alicycliphilus denitrificans BC regulatory protein tetr YP_004124781.1 114282 D 596153 CDS YP_004124782.1 319760845 10102131 complement(114895..115317) 1 NC_014910.1 PFAM: UspA domain-containing protein; KEGG: ajs:Ajs_0074 UspA domain-containing protein; uspa domain-containing protein 115317 10102131 Alide_0108 Alicycliphilus denitrificans BC uspa domain-containing protein YP_004124782.1 114895 R 596153 CDS YP_004124783.1 319760846 10102132 complement(115419..116264) 1 NC_014910.1 PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0075 metallophosphoesterase; metallophosphoesterase 116264 10102132 Alide_0109 Alicycliphilus denitrificans BC metallophosphoesterase YP_004124783.1 115419 R 596153 CDS YP_004124784.1 319760847 10102133 complement(116291..117262) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0076 LysR family transcriptional regulator; LysR family transcriptional regulator 117262 10102133 Alide_0110 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124784.1 116291 R 596153 CDS YP_004124785.1 319760848 10102134 117388..117828 1 NC_014910.1 KEGG: ajs:Ajs_0077 hypothetical protein; hypothetical protein 117828 10102134 Alide_0111 Alicycliphilus denitrificans BC hypothetical protein YP_004124785.1 117388 D 596153 CDS YP_004124786.1 319760849 10102135 complement(117968..119836) 1 NC_014910.1 KEGG: dac:Daci_0114 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase (GTP); phosphoenolpyruvate carboxykinase (gtp) 119836 10102135 Alide_0112 Alicycliphilus denitrificans BC phosphoenolpyruvate carboxykinase (gtp) YP_004124786.1 117968 R 596153 CDS YP_004124787.1 319760850 10102136 complement(120176..120337) 1 NC_014910.1 KEGG: dia:Dtpsy_0098 hypothetical protein; hypothetical protein 120337 10102136 Alide_0113 Alicycliphilus denitrificans BC hypothetical protein YP_004124787.1 120176 R 596153 CDS YP_004124788.1 319760851 10102137 complement(120427..121626) 1 NC_014910.1 KEGG: dia:Dtpsy_0099 threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; threonine dehydratase 121626 10102137 Alide_0114 Alicycliphilus denitrificans BC threonine dehydratase YP_004124788.1 120427 R 596153 CDS YP_004124789.1 319760852 10102138 complement(121729..123390) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0081 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 123390 10102138 Alide_0115 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124789.1 121729 R 596153 CDS YP_004124790.1 319760853 10102139 complement(123446..126166) 1 NC_014910.1 KEGG: pfl:PFL_4078 magnesium-transporting ATPase MgtA; TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; magnesium-translocating p-type atpase 126166 10102139 Alide_0116 Alicycliphilus denitrificans BC magnesium-translocating p-type atpase YP_004124790.1 123446 R 596153 CDS YP_004124791.1 319760854 10102140 complement(126301..127332) 1 NC_014910.1 PFAM: homocysteine S-methyltransferase; KEGG: ajs:Ajs_0083 methionine synthase (B12-dependent); homocysteine s-methyltransferase 127332 10102140 Alide_0117 Alicycliphilus denitrificans BC homocysteine s-methyltransferase YP_004124791.1 126301 R 596153 CDS YP_004124792.1 319760855 10102141 complement(127329..128330) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_0175 LysR family transcriptional regulator; LysR family transcriptional regulator 128330 10102141 Alide_0118 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124792.1 127329 R 596153 CDS YP_004124793.1 319760856 10102142 complement(128355..129518) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 129518 10102142 Alide_0119 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124793.1 128355 R 596153 CDS YP_004124794.1 319760857 10102143 complement(129515..129898) 1 NC_014910.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: aav:Aave_0177 cupin 2 domain-containing protein; cupin 2 barrel domain-containing protein 129898 10102143 Alide_0120 Alicycliphilus denitrificans BC cupin 2 barrel domain-containing protein YP_004124794.1 129515 R 596153 CDS YP_004124795.1 319760858 10102144 complement(129915..130880) 1 NC_014910.1 KEGG: aav:Aave_0180 hypothetical protein; hypothetical protein 130880 10102144 Alide_0121 Alicycliphilus denitrificans BC hypothetical protein YP_004124795.1 129915 R 596153 CDS YP_004124796.1 319760859 10102145 131138..133006 1 NC_014910.1 TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; helicase domain protein; DEAD/DEAH box helicase domain protein; HRDC domain protein; KEGG: dia:Dtpsy_0103 ATP-dependent DNA helicase RecQ; SMART: helicase domain protein; DEAD-like helicase ; HRDC domain protein; ATP-dependent DNA helicase RecQ 133006 10102145 Alide_0122 Alicycliphilus denitrificans BC ATP-dependent DNA helicase RecQ YP_004124796.1 131138 D 596153 CDS YP_004124797.1 319760860 10102146 complement(133010..133690) 1 NC_014910.1 KEGG: ajs:Ajs_0085 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; anaerobic ribonucleoside-triphosphate reductase activating protein 133690 10102146 Alide_0123 Alicycliphilus denitrificans BC anaerobic ribonucleoside-triphosphate reductase activating protein YP_004124797.1 133010 R 596153 CDS YP_004124798.1 319760861 10102147 complement(133668..133868) 1 NC_014910.1 KEGG: dia:Dtpsy_0105 hypothetical protein; hypothetical protein 133868 10102147 Alide_0124 Alicycliphilus denitrificans BC hypothetical protein YP_004124798.1 133668 R 596153 CDS YP_004124799.1 319760862 10102148 complement(133951..135981) 1 NC_014910.1 KEGG: dia:Dtpsy_0106 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; anaerobic ribonucleoside-triphosphate reductase 135981 10102148 Alide_0125 Alicycliphilus denitrificans BC anaerobic ribonucleoside-triphosphate reductase YP_004124799.1 133951 R 596153 CDS YP_004124800.1 319760863 10102149 complement(136106..139408) 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; diguanylate cyclase 139408 10102149 Alide_0126 Alicycliphilus denitrificans BC diguanylate cyclase YP_004124800.1 136106 R 596153 CDS YP_004124801.1 319760864 10102150 complement(139694..140122) 1 NC_014910.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dia:Dtpsy_0108 hemerythrin HHE cation binding domain-containing protein; hemerythrin hhe cation binding domain-containing protein 140122 10102150 Alide_0127 Alicycliphilus denitrificans BC hemerythrin hhe cation binding domain-containing protein YP_004124801.1 139694 R 596153 CDS YP_004124802.1 319760865 10102151 complement(140192..142501) 1 NC_014910.1 KEGG: dia:Dtpsy_0109 nitric oxide reductase large subunit; nitric oxide reductase large subunit 142501 10102151 Alide_0128 Alicycliphilus denitrificans BC nitric oxide reductase large subunit YP_004124802.1 140192 R 596153 CDS YP_004124803.1 319760866 10102152 142653..144266 1 NC_014910.1 KEGG: dia:Dtpsy_0110 anaerobic nitric oxide reductase transcription regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 144266 10102152 Alide_0129 Alicycliphilus denitrificans BC sigma-54 factor interaction domain-containing protein YP_004124803.1 142653 D 596153 CDS YP_004124804.1 319760867 10102153 complement(144319..144981) 1 NC_014910.1 KEGG: ctt:CtCNB1_2843 hypothetical protein; hypothetical protein 144981 10102153 Alide_0130 Alicycliphilus denitrificans BC hypothetical protein YP_004124804.1 144319 R 596153 CDS YP_004124805.1 319760868 10102154 145218..146606 1 NC_014910.1 TIGRFAM: L-serine dehydratase 1; KEGG: dia:Dtpsy_0112 L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; l-serine dehydratase 1 146606 10102154 Alide_0131 Alicycliphilus denitrificans BC l-serine dehydratase 1 YP_004124805.1 145218 D 596153 CDS YP_004124806.1 319760869 10102155 146738..147688 1 NC_014910.1 KEGG: dia:Dtpsy_0114 hypothetical protein; hypothetical protein 147688 10102155 Alide_0132 Alicycliphilus denitrificans BC hypothetical protein YP_004124806.1 146738 D 596153 CDS YP_004124807.1 319760870 10102156 147693..149267 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 149267 10102156 Alide_0133 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004124807.1 147693 D 596153 CDS YP_004124808.1 319760871 10102157 149285..150277 1 NC_014910.1 KEGG: ajs:Ajs_0099 hypothetical protein; hypothetical protein 150277 10102157 Alide_0134 Alicycliphilus denitrificans BC hypothetical protein YP_004124808.1 149285 D 596153 CDS YP_004124809.1 319760872 10102158 150290..150745 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_0117 thioesterase superfamily protein; thioesterase superfamily protein 150745 10102158 Alide_0135 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004124809.1 150290 D 596153 CDS YP_004124810.1 319760873 10102159 complement(150767..151777) 1 NC_014910.1 KEGG: dia:Dtpsy_0118 hypothetical protein; hypothetical protein 151777 10102159 Alide_0136 Alicycliphilus denitrificans BC hypothetical protein YP_004124810.1 150767 R 596153 CDS YP_004124811.1 319760874 10102160 complement(151817..152803) 1 NC_014910.1 KEGG: dia:Dtpsy_0119 hypothetical protein; hypothetical protein 152803 10102160 Alide_0137 Alicycliphilus denitrificans BC hypothetical protein YP_004124811.1 151817 R 596153 CDS YP_004124812.1 319760875 10102161 complement(152836..153990) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 153990 10102161 Alide_0138 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124812.1 152836 R 596153 CDS YP_004124813.1 319760876 10102162 complement(154066..155613) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 155613 10102162 Alide_0139 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004124813.1 154066 R 596153 CDS YP_004124814.1 319760877 10102163 155819..156997 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_0122 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 156997 10102163 Alide_0140 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004124814.1 155819 D 596153 CDS YP_004124815.1 319760878 10102164 157053..157820 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 157820 10102164 Alide_0141 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004124815.1 157053 D 596153 CDS YP_004124816.1 319760879 10102165 157889..158887 1 NC_014910.1 KEGG: dia:Dtpsy_0125 hypothetical protein; hypothetical protein 158887 10102165 Alide_0142 Alicycliphilus denitrificans BC hypothetical protein YP_004124816.1 157889 D 596153 CDS YP_004124817.1 319760880 10102166 158897..159703 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_0109 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 159703 10102166 Alide_0143 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004124817.1 158897 D 596153 CDS YP_004124818.1 319760881 10102167 159700..159804 1 NC_014910.1 hypothetical protein 159804 10102167 Alide_0144 Alicycliphilus denitrificans BC hypothetical protein YP_004124818.1 159700 D 596153 CDS YP_004124819.1 319760882 10102168 159841..160620 1 NC_014910.1 KEGG: dia:Dtpsy_0128 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 160620 10102168 Alide_0145 Alicycliphilus denitrificans BC regulatory protein iclr YP_004124819.1 159841 D 596153 CDS YP_004124820.1 319760883 10102169 160715..161824 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 161824 10102169 Alide_0146 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004124820.1 160715 D 596153 CDS YP_004124821.1 319760884 10102170 complement(161850..162839) 1 NC_014910.1 KEGG: reh:H16_B1448 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein 162839 10102170 Alide_0147 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004124821.1 161850 R 596153 CDS YP_004124822.1 319760885 10102171 complement(162883..163299) 1 NC_014910.1 PFAM: protein of unknown function DUF35; KEGG: reh:H16_A2147 hypothetical protein; hypothetical protein 163299 10102171 Alide_0148 Alicycliphilus denitrificans BC hypothetical protein YP_004124822.1 162883 R 596153 CDS YP_004124823.1 319760886 10102172 complement(163301..164461) 1 NC_014910.1 KEGG: reh:H16_A2148 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 164461 10102172 Alide_0149 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004124823.1 163301 R 596153 CDS YP_004124824.1 319760887 10102173 complement(164484..165641) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reh:H16_A2149 acyl-CoA dehydrogenase, long-chain specific; acyl-CoA dehydrogenase 165641 10102173 Alide_0150 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124824.1 164484 R 596153 CDS YP_004124825.1 319760888 10102174 complement(165676..167217) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2150 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase/ligase 167217 10102174 Alide_0151 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004124825.1 165676 R 596153 CDS YP_004124826.1 319760889 10102175 complement(167204..168139) 1 NC_014910.1 KEGG: reh:H16_A2151 acyl dehydratase; PFAM: MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 168139 10102175 Alide_0152 Alicycliphilus denitrificans BC 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_004124826.1 167204 R 596153 CDS YP_004124827.1 319760890 10102176 complement(168157..169080) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reh:H16_A2152 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 169080 10102176 Alide_0153 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004124827.1 168157 R 596153 CDS YP_004124828.1 319760891 10102177 complement(169106..170089) 1 NC_014910.1 KEGG: reh:H16_A2153 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein 170089 10102177 Alide_0154 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004124828.1 169106 R 596153 CDS YP_004124829.1 319760892 10102178 170319..171104 1 NC_014910.1 KEGG: reh:H16_A2154 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; transcriptional regulator iclr 171104 10102178 Alide_0155 Alicycliphilus denitrificans BC transcriptional regulator iclr YP_004124829.1 170319 D 596153 CDS YP_004124830.1 319760893 10102179 complement(171124..172380) 1 NC_014910.1 KEGG: ajs:Ajs_0113 major facilitator superfamily transporter; manually curated; PFAM: major facilitator superfamily MFS_1; major facilitator superfamily protein 172380 10102179 Alide_0156 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004124830.1 171124 R 596153 CDS YP_004124831.1 319760894 10102180 complement(172421..173284) 1 NC_014910.1 KEGG: dia:Dtpsy_0131 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; citryl-CoA lyase 173284 10102180 Alide_0157 Alicycliphilus denitrificans BC citryl-CoA lyase YP_004124831.1 172421 R 596153 CDS YP_004124832.1 319760895 10102182 complement(173667..174755) 1 NC_014910.1 KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein; transposase is4 family protein 174755 10102182 Alide_0159 Alicycliphilus denitrificans BC transposase is4 family protein YP_004124832.1 173667 R 596153 CDS YP_004124833.1 319760896 10102183 complement(175711..177096) 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: dia:Dtpsy_0134 MmgE/PrpD family protein; mmge/prpd family protein 177096 10102183 Alide_0160 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004124833.1 175711 R 596153 CDS YP_004124834.1 319760897 10102184 complement(177147..178328) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 178328 10102184 Alide_0161 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004124834.1 177147 R 596153 CDS YP_004124835.1 319760898 10102185 complement(178339..179505) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_0198 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 179505 10102185 Alide_0162 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124835.1 178339 R 596153 CDS YP_004124836.1 319760899 10102186 complement(179579..180472) 1 NC_014910.1 KEGG: dia:Dtpsy_0137 hypothetical protein; hypothetical protein 180472 10102186 Alide_0163 Alicycliphilus denitrificans BC hypothetical protein YP_004124836.1 179579 R 596153 CDS YP_004124837.1 319760900 10102187 180657..181574 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_0138 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 181574 10102187 Alide_0164 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004124837.1 180657 D 596153 CDS YP_004124838.1 319760901 10102188 181578..182471 1 NC_014910.1 KEGG: ajs:Ajs_0121 dehydratase; PFAM: MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 182471 10102188 Alide_0165 Alicycliphilus denitrificans BC 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_004124838.1 181578 D 596153 CDS YP_004124839.1 319760902 10102189 182553..183347 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_0140 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 183347 10102189 Alide_0166 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004124839.1 182553 D 596153 CDS YP_004124840.1 319760903 10102190 183484..184767 1 NC_014910.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: ajs:Ajs_0123 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 184767 10102190 Alide_0167 Alicycliphilus denitrificans BC acetyl-CoA hydrolase/transferase YP_004124840.1 183484 D 596153 CDS YP_004124841.1 319760904 10102191 184834..186042 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ajs:Ajs_0124 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 186042 10102191 Alide_0168 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004124841.1 184834 D 596153 CDS YP_004124842.1 319760905 10102192 complement(186057..186980) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_0188 LysR family transcriptional regulator; LysR family transcriptional regulator 186980 10102192 Alide_0169 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124842.1 186057 R 596153 CDS YP_004124843.1 319760906 10102193 187158..188342 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_0189 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 188342 10102193 Alide_0170 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004124843.1 187158 D 596153 CDS YP_004124844.1 319760907 10102194 188357..189382 1 NC_014910.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_0190 alcohol dehydrogenase; alcohol dehydrogenase 189382 10102194 Alide_0171 Alicycliphilus denitrificans BC alcohol dehydrogenase YP_004124844.1 188357 D 596153 CDS YP_004124845.1 319760908 10102195 189379..190404 1 NC_014910.1 KEGG: dac:Daci_0191 hypothetical protein; hypothetical protein 190404 10102195 Alide_0172 Alicycliphilus denitrificans BC hypothetical protein YP_004124845.1 189379 D 596153 CDS YP_004124846.1 319760909 10102196 complement(190435..191343) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_3679 LysR family transcriptional regulator; LysR family transcriptional regulator 191343 10102196 Alide_0173 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124846.1 190435 R 596153 CDS YP_004124847.1 319760910 10102197 191452..192435 1 NC_014910.1 KEGG: aav:Aave_3678 hypothetical protein; hypothetical protein 192435 10102197 Alide_0174 Alicycliphilus denitrificans BC hypothetical protein YP_004124847.1 191452 D 596153 CDS YP_004124848.1 319760911 10102198 192432..193631 1 NC_014910.1 TIGRFAM: amidohydrolase; KEGG: aav:Aave_3677 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 193631 10102198 Alide_0175 Alicycliphilus denitrificans BC amidohydrolase YP_004124848.1 192432 D 596153 CDS YP_004124849.1 319760912 10102199 193811..194791 1 NC_014910.1 KEGG: ajs:Ajs_0125 hypothetical protein; hypothetical protein 194791 10102199 Alide_0176 Alicycliphilus denitrificans BC hypothetical protein YP_004124849.1 193811 D 596153 CDS YP_004124850.1 319760913 10102200 194793..196301 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_0144 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 196301 10102200 Alide_0177 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004124850.1 194793 D 596153 CDS YP_004124851.1 319760914 10102201 196319..197302 1 NC_014910.1 KEGG: dia:Dtpsy_0145 hypothetical protein; hypothetical protein 197302 10102201 Alide_0178 Alicycliphilus denitrificans BC hypothetical protein YP_004124851.1 196319 D 596153 CDS YP_004124852.1 319760915 10102202 complement(197357..198358) 1 NC_014910.1 KEGG: reh:H16_B1474 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein 198358 10102202 Alide_0179 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004124852.1 197357 R 596153 CDS YP_004124853.1 319760916 10102203 complement(198379..199560) 1 NC_014910.1 PFAM: peptidase M20; peptidase dimerisation domain protein; manually curated; KEGG: reu:Reut_B4300 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; amidohydrolase 199560 10102203 Alide_0180 Alicycliphilus denitrificans BC amidohydrolase YP_004124853.1 198379 R 596153 CDS YP_004124854.1 319760917 10102204 199825..200244 1 NC_014910.1 PFAM: protein of unknown function DUF35; KEGG: ajs:Ajs_0128 hypothetical protein; hypothetical protein 200244 10102204 Alide_0181 Alicycliphilus denitrificans BC hypothetical protein YP_004124854.1 199825 D 596153 CDS YP_004124855.1 319760918 10102205 200241..201449 1 NC_014910.1 KEGG: ajs:Ajs_0129 thiolase; thiolase 201449 10102205 Alide_0182 Alicycliphilus denitrificans BC thiolase YP_004124855.1 200241 D 596153 CDS YP_004124856.1 319760919 10102206 201469..202626 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_0148 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 202626 10102206 Alide_0183 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124856.1 201469 D 596153 CDS YP_004124857.1 319760920 10102207 202623..203054 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: dac:Daci_0175 thioesterase superfamily protein; thioesterase superfamily protein 203054 10102207 Alide_0184 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004124857.1 202623 D 596153 CDS YP_004124858.1 319760921 10102208 complement(203051..203800) 1 NC_014910.1 KEGG: vei:Veis_2216 regulatory proteins, IclR; PFAM: regulatory protein IclR; SMART: regulatory protein IclR; regulatory protein iclr 203800 10102208 Alide_0185 Alicycliphilus denitrificans BC regulatory protein iclr YP_004124858.1 203051 R 596153 CDS YP_004124859.1 319760922 10102209 203931..204917 1 NC_014910.1 PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: vei:Veis_2212 hypothetical protein; hypothetical protein 204917 10102209 Alide_0186 Alicycliphilus denitrificans BC hypothetical protein YP_004124859.1 203931 D 596153 CDS YP_004124860.1 319760923 10102210 204914..205774 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vei:Veis_2211 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 205774 10102210 Alide_0187 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004124860.1 204914 D 596153 CDS YP_004124861.1 319760924 10102211 205774..206922 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase 206922 10102211 Alide_0188 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124861.1 205774 D 596153 CDS YP_004124862.1 319760925 10102212 206972..208591 1 NC_014910.1 KEGG: reu:Reut_B4463 propionyl-CoA carboxylase; PFAM: carboxyl transferase; methylcrotonoyl-CoA carboxylase 208591 10102212 Alide_0189 Alicycliphilus denitrificans BC methylcrotonoyl-CoA carboxylase YP_004124862.1 206972 D 596153 CDS YP_004124863.1 319760926 10102213 208602..209765 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reu:Reut_B4462 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase 209765 10102213 Alide_0190 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124863.1 208602 D 596153 CDS YP_004124864.1 319760927 10102214 209767..210588 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_2207 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 210588 10102214 Alide_0191 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004124864.1 209767 D 596153 CDS YP_004124865.1 319760928 10102215 210602..212596 1 NC_014910.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: reu:Reut_B4460 carbamoyl-phosphate synthase subunit L; carbamoyl-phosphate synthase l chain ATP-binding protein 212596 10102215 Alide_0192 Alicycliphilus denitrificans BC carbamoyl-phosphate synthase l chain ATP-binding protein YP_004124865.1 210602 D 596153 CDS YP_004124866.1 319760929 10102216 212593..214407 1 NC_014910.1 PFAM: protein of unknown function DUF1446; KEGG: reu:Reut_B4459 hypothetical protein; hypothetical protein 214407 10102216 Alide_0193 Alicycliphilus denitrificans BC hypothetical protein YP_004124866.1 212593 D 596153 CDS YP_004124867.1 319760930 10102217 214431..215411 1 NC_014910.1 KEGG: reu:Reut_B4458 hypothetical protein; hypothetical protein 215411 10102217 Alide_0194 Alicycliphilus denitrificans BC hypothetical protein YP_004124867.1 214431 D 596153 CDS YP_004124868.1 319760931 10102218 215419..216639 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_2206 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 216639 10102218 Alide_0195 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004124868.1 215419 D 596153 CDS YP_004124869.1 319760932 10102219 complement(216685..217602) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0150 transcriptional regulator, LysR family; LysR family transcriptional regulator 217602 10102219 Alide_0196 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124869.1 216685 R 596153 CDS YP_004124870.1 319760933 10102220 217712..218989 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dia:Dtpsy_0151 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 218989 10102220 Alide_0197 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004124870.1 217712 D 596153 CDS YP_004124871.1 319760934 10102221 complement(219041..219940) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_0218 transcriptional regulator, LysR family; LysR family transcriptional regulator 219940 10102221 Alide_0198 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124871.1 219041 R 596153 CDS YP_004124872.1 319760935 10102222 220078..221091 1 NC_014910.1 KEGG: ctt:CtCNB1_0219 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 221091 10102222 Alide_0199 Alicycliphilus denitrificans BC twin-arginine translocation pathway signal YP_004124872.1 220078 D 596153 CDS YP_004124873.1 319760936 10102223 221223..222413 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 222413 10102223 Alide_0200 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004124873.1 221223 D 596153 CDS YP_004124874.1 319760937 10102224 complement(222438..223730) 1 NC_014910.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: dia:Dtpsy_0153 Glu/Leu/Phe/Val dehydrogenase; glu/leu/phe/val dehydrogenase 223730 10102224 Alide_0201 Alicycliphilus denitrificans BC glu/leu/phe/val dehydrogenase YP_004124874.1 222438 R 596153 CDS YP_004124875.1 319760938 10102225 223917..224366 1 NC_014910.1 PFAM: transmembrane pair domain-containing protein; KEGG: dia:Dtpsy_0156 transmembrane pair domain protein; transmembrane pair domain-containing protein 224366 10102225 Alide_0202 Alicycliphilus denitrificans BC transmembrane pair domain-containing protein YP_004124875.1 223917 D 596153 CDS YP_004124876.1 319760939 10102227 225477..228212 1 NC_014910.1 TIGRFAM: methionine synthase; KEGG: dac:Daci_0232 methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region; methionine synthase 228212 10102227 Alide_0204 Alicycliphilus denitrificans BC methionine synthase YP_004124876.1 225477 D 596153 CDS YP_004124877.1 319760940 10102228 228371..231460 1 NC_014910.1 TIGRFAM: CRISPR-associated protein, Csn1 family; KEGG: vei:Veis_1230 CRISPR-associated endonuclease Csn1 family protein; crispr-associated protein, csn1 family 231460 10102228 Alide_0205 Alicycliphilus denitrificans BC crispr-associated protein, csn1 family YP_004124877.1 228371 D 596153 CDS YP_004124878.1 319760941 10102229 231466..232395 1 NC_014910.1 KEGG: vei:Veis_1231 CRISPR-associated Cas1 family protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; crispr-associated protein cas1 232395 10102229 Alide_0206 Alicycliphilus denitrificans BC crispr-associated protein cas1 YP_004124878.1 231466 D 596153 CDS YP_004124879.1 319760942 10102230 232438..232743 1 NC_014910.1 KEGG: vei:Veis_1232 CRISPR-associated Cas2 family protein; TIGRFAM: CRISPR-associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2; crispr-associated protein cas2 232743 10102230 Alide_0207 Alicycliphilus denitrificans BC crispr-associated protein cas2 YP_004124879.1 232438 D 596153 CDS YP_004124880.1 319760943 10102232 complement(233693..234955) 1 NC_014910.1 PFAM: conjugation TrbI family protein; KEGG: ajs:Ajs_2902 conjugation TrbI family protein; conjugation trbi family protein 234955 10102232 Alide_0209 Alicycliphilus denitrificans BC conjugation trbi family protein YP_004124880.1 233693 R 596153 CDS YP_004124881.1 319760944 10102233 complement(234957..235937) 1 NC_014910.1 KEGG: ajs:Ajs_2903 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; p-type conjugative transfer protein trbg 235937 10102233 Alide_0210 Alicycliphilus denitrificans BC p-type conjugative transfer protein trbg YP_004124881.1 234957 R 596153 CDS YP_004124882.1 319760945 10102234 complement(235934..236638) 1 NC_014910.1 KEGG: rpi:Rpic_2651 conjugal transfer protein TrbF; conjugal transfer protein trbf 236638 10102234 Alide_0211 Alicycliphilus denitrificans BC conjugal transfer protein trbf YP_004124882.1 235934 R 596153 CDS YP_004124883.1 319760946 10102235 complement(236657..237991) 1 NC_014910.1 KEGG: ajs:Ajs_2905 conjugal transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; p-type conjugative transfer protein trbl 237991 10102235 Alide_0212 Alicycliphilus denitrificans BC p-type conjugative transfer protein trbl YP_004124883.1 236657 R 596153 CDS YP_004124884.1 319760947 10102236 complement(238004..238729) 1 NC_014910.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: ajs:Ajs_2907 conjugal transfer protein TrbJ; p-type conjugative transfer protein trbj 238729 10102236 Alide_0213 Alicycliphilus denitrificans BC p-type conjugative transfer protein trbj YP_004124884.1 238004 R 596153 CDS YP_004124885.1 319760948 10102237 complement(238726..241161) 1 NC_014910.1 KEGG: ajs:Ajs_2908 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase; type IV transport system protein VirB 241161 10102237 Alide_0214 Alicycliphilus denitrificans BC type IV transport system protein VirB YP_004124885.1 238726 R 596153 CDS YP_004124886.1 319760949 10102238 complement(241171..241443) 1 NC_014910.1 KEGG: ajs:Ajs_2909 conjugal transfer TrbD transmembrane protein; conjugal transfer trbd transmembrane protein 241443 10102238 Alide_0215 Alicycliphilus denitrificans BC conjugal transfer trbd transmembrane protein YP_004124886.1 241171 R 596153 CDS YP_004124887.1 319760950 10102239 complement(241440..241817) 1 NC_014910.1 PFAM: Conjugal transfer protein TrbC; KEGG: dac:Daci_2698 conjugal transfer protein TrbC; conjugal transfer protein trbc 241817 10102239 Alide_0216 Alicycliphilus denitrificans BC conjugal transfer protein trbc YP_004124887.1 241440 R 596153 CDS YP_004124888.1 319760951 10102240 complement(241814..242848) 1 NC_014910.1 KEGG: ajs:Ajs_2911 type II secretion system protein E; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; p-type conjugative transfer atpase trbb 242848 10102240 Alide_0217 Alicycliphilus denitrificans BC p-type conjugative transfer atpase trbb YP_004124888.1 241814 R 596153 CDS YP_004124889.1 319760952 10102241 complement(242845..243291) 1 NC_014910.1 KEGG: ajs:Ajs_2912 CopG/DNA-binding domain-containing protein; copg/DNA-binding domain-containing protein 243291 10102241 Alide_0218 Alicycliphilus denitrificans BC copg/DNA-binding domain-containing protein YP_004124889.1 242845 R 596153 CDS YP_004124890.1 319760953 10102242 complement(243288..245291) 1 NC_014910.1 PFAM: TRAG family protein; KEGG: dac:Daci_2701 conjugal transfer coupling protein TraG; trag family protein 245291 10102242 Alide_0219 Alicycliphilus denitrificans BC trag family protein YP_004124890.1 243288 R 596153 CDS YP_004124891.1 319760954 10102243 complement(245507..245779) 1 NC_014910.1 KEGG: bmj:BMULJ_00894 probable lipoprotein; lipoprotein 245779 10102243 Alide_0220 Alicycliphilus denitrificans BC lipoprotein YP_004124891.1 245507 R 596153 CDS YP_004124892.1 319760955 10102244 complement(245815..246708) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sml:Smlt1302 LysR family transcriptional regulator; LysR family transcriptional regulator 246708 10102244 Alide_0221 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124892.1 245815 R 596153 CDS YP_004124893.1 319760956 10102245 complement(246778..249966) 1 NC_014910.1 KEGG: ajs:Ajs_1849 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, czca family 249966 10102245 Alide_0222 Alicycliphilus denitrificans BC heavy metal efflux pump, czca family YP_004124893.1 246778 R 596153 CDS YP_004124894.1 319760957 10102246 complement(249983..251575) 1 NC_014910.1 KEGG: ajs:Ajs_1848 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 251575 10102246 Alide_0223 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004124894.1 249983 R 596153 CDS YP_004124895.1 319760958 10102247 complement(251578..252903) 1 NC_014910.1 PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_1847 outer membrane efflux protein; outer membrane efflux protein 252903 10102247 Alide_0224 Alicycliphilus denitrificans BC outer membrane efflux protein YP_004124895.1 251578 R 596153 CDS YP_004124896.1 319760959 10102248 complement(253070..253423) 1 NC_014910.1 manually curated; KEGG: dar:Daro_2621 hypothetical protein; hypothetical protein 253423 10102248 Alide_0225 Alicycliphilus denitrificans BC hypothetical protein YP_004124896.1 253070 R 596153 CDS YP_004124897.1 319760960 10102249 complement(253630..253965) 1 NC_014910.1 KEGG: ajs:Ajs_2700 hypothetical protein; hypothetical protein 253965 10102249 Alide_0226 Alicycliphilus denitrificans BC hypothetical protein YP_004124897.1 253630 R 596153 CDS YP_004124898.1 319760961 10102250 254110..254796 1 NC_014910.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: dia:Dtpsy_2215 two component heavy metal response transcriptional regulator, winged helix family; SMART: response regulator receiver; heavy metal response regulator 254796 10102250 Alide_0227 Alicycliphilus denitrificans BC heavy metal response regulator YP_004124898.1 254110 D 596153 CDS YP_004124899.1 319760962 10102251 254925..256115 1 NC_014910.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: dia:Dtpsy_2216 heavy metal sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; heavy metal sensor kinase 256115 10102251 Alide_0228 Alicycliphilus denitrificans BC heavy metal sensor kinase YP_004124899.1 254925 D 596153 CDS YP_004124900.1 319760963 10102252 complement(256151..256843) 1 NC_014910.1 KEGG: ara:Arad_2530 transporter; transporter 256843 10102252 Alide_0229 Alicycliphilus denitrificans BC transporter YP_004124900.1 256151 R 596153 CDS YP_004124901.1 319760964 10102253 complement(256847..257137) 1 NC_014910.1 manually curated; KEGG: sfr:Sfri_3475 hypothetical protein; hypothetical protein 257137 10102253 Alide_0230 Alicycliphilus denitrificans BC hypothetical protein YP_004124901.1 256847 R 596153 CDS YP_004124902.1 319760965 10102254 complement(257160..259469) 1 NC_014910.1 KEGG: vap:Vapar_3562 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase 259469 10102254 Alide_0231 Alicycliphilus denitrificans BC heavy metal translocating p-type atpase YP_004124902.1 257160 R 596153 CDS YP_004124903.1 319760966 10102255 259708..260163 1 NC_014910.1 SMART: regulatory protein MerR; manually curated; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; KEGG: mpt:Mpe_A1657 transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; cd(ii)/pb(ii)-responsive transcriptional regulator 260163 10102255 Alide_0232 Alicycliphilus denitrificans BC cd(ii)/pb(ii)-responsive transcriptional regulator YP_004124903.1 259708 D 596153 CDS YP_004124904.1 319760967 10102256 complement(260164..262146) 1 NC_014910.1 KEGG: dac:Daci_0453 hypothetical protein; hypothetical protein 262146 10102256 Alide_0233 Alicycliphilus denitrificans BC hypothetical protein YP_004124904.1 260164 R 596153 CDS YP_004124905.1 319760968 10102257 complement(262143..262598) 1 NC_014910.1 manually curated; KEGG: sml:Smlt1309 hypothetical protein; hypothetical protein 262598 10102257 Alide_0234 Alicycliphilus denitrificans BC hypothetical protein YP_004124905.1 262143 R 596153 CDS YP_004124906.1 319760969 10102258 complement(262595..263194) 1 NC_014910.1 PFAM: Peptidase S26, conserved region; KEGG: dia:Dtpsy_1292 TraF peptidase. Serine peptidase. MEROPS family S26C; peptidase s26 263194 10102258 Alide_0235 Alicycliphilus denitrificans BC peptidase s26 YP_004124906.1 262595 R 596153 CDS YP_004124907.1 319760970 10102259 complement(263191..263736) 1 NC_014910.1 KEGG: dia:Dtpsy_3522 hypothetical protein; hypothetical protein 263736 10102259 Alide_0236 Alicycliphilus denitrificans BC hypothetical protein YP_004124907.1 263191 R 596153 CDS YP_004124908.1 319760971 10102260 complement(263733..264017) 1 NC_014910.1 KEGG: aav:Aave_0688 hypothetical protein; hypothetical protein 264017 10102260 Alide_0237 Alicycliphilus denitrificans BC hypothetical protein YP_004124908.1 263733 R 596153 CDS YP_004124909.1 319760972 10102261 complement(264014..264652) 1 NC_014910.1 KEGG: tgr:Tgr7_1879 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 264652 10102261 Alide_0238 Alicycliphilus denitrificans BC cobyrinic acid ac-diamide synthase YP_004124909.1 264014 R 596153 CDS YP_004124910.1 319760973 10102262 complement(264906..265739) 1 NC_014910.1 PFAM: Replication initiator protein A; KEGG: dac:Daci_2721 replication initiator and transcription repressor protein; replication initiator protein a 265739 10102262 Alide_0239 Alicycliphilus denitrificans BC replication initiator protein a YP_004124910.1 264906 R 596153 CDS YP_004124911.1 319760974 10102263 complement(265766..266047) 1 NC_014910.1 KEGG: ajs:Ajs_2652 hypothetical protein; hypothetical protein 266047 10102263 Alide_0240 Alicycliphilus denitrificans BC hypothetical protein YP_004124911.1 265766 R 596153 CDS YP_004124912.1 319760975 10102264 complement(266131..266904) 1 NC_014910.1 KEGG: ajs:Ajs_2651 hypothetical protein; hypothetical protein 266904 10102264 Alide_0241 Alicycliphilus denitrificans BC hypothetical protein YP_004124912.1 266131 R 596153 CDS YP_004124913.1 319760976 10102265 complement(267233..267583) 1 NC_014910.1 KEGG: dia:Dtpsy_3529 lipoprotein; lipoprotein 267583 10102265 Alide_0242 Alicycliphilus denitrificans BC lipoprotein YP_004124913.1 267233 R 596153 CDS YP_004124914.1 319760977 10102266 267842..268135 1 NC_014910.1 KEGG: dia:Dtpsy_3530 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 268135 10102266 Alide_0243 Alicycliphilus denitrificans BC helix-turn-helix domain-containing protein YP_004124914.1 267842 D 596153 CDS YP_004124915.1 319760978 10102267 complement(268520..268834) 1 NC_014910.1 PFAM: protein of unknown function DUF736; KEGG: aav:Aave_0681 hypothetical protein; hypothetical protein 268834 10102267 Alide_0244 Alicycliphilus denitrificans BC hypothetical protein YP_004124915.1 268520 R 596153 CDS YP_004124916.1 319760979 10102268 269905..270819 1 NC_014910.1 KEGG: rpc:RPC_3544 phage associated protein; phage associated protein 270819 10102268 Alide_0245 Alicycliphilus denitrificans BC phage associated protein YP_004124916.1 269905 D 596153 CDS YP_004124917.1 319760980 10102269 270960..271802 1 NC_014910.1 PFAM: RelA/SpoT domain protein; KEGG: rpc:RPC_3545 RelA/SpoT; rela/spot domain-containing protein 271802 10102269 Alide_0246 Alicycliphilus denitrificans BC rela/spot domain-containing protein YP_004124917.1 270960 D 596153 CDS YP_004124918.1 319760981 10102270 complement(271936..272145) 1 NC_014910.1 KEGG: dac:Daci_2732 hypothetical protein; hypothetical protein 272145 10102270 Alide_0247 Alicycliphilus denitrificans BC hypothetical protein YP_004124918.1 271936 R 596153 CDS YP_004124919.1 319760982 10102271 complement(272208..274262) 1 NC_014910.1 KEGG: dia:Dtpsy_3534 ParB domain protein nuclease; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parb domain-containing protein nuclease 274262 10102271 Alide_0248 Alicycliphilus denitrificans BC parb domain-containing protein nuclease YP_004124919.1 272208 R 596153 CDS YP_004124920.1 319760983 10102272 complement(274328..275155) 1 NC_014910.1 KEGG: ajs:Ajs_2944 hypothetical protein; hypothetical protein 275155 10102272 Alide_0249 Alicycliphilus denitrificans BC hypothetical protein YP_004124920.1 274328 R 596153 CDS YP_004124921.1 319760984 10102273 276176..276409 1 NC_014910.1 KEGG: hse:Hsero_2905 hypothetical protein; hypothetical protein 276409 10102273 Alide_0250 Alicycliphilus denitrificans BC hypothetical protein YP_004124921.1 276176 D 596153 CDS YP_004124922.1 319760985 10102274 276459..276767 1 NC_014910.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: hse:Hsero_2904 XRE family transcription regulator protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 276767 10102274 Alide_0251 Alicycliphilus denitrificans BC helix-turn-helix domain-containing protein YP_004124922.1 276459 D 596153 CDS YP_004124923.1 319760986 10102275 276730..277758 1 NC_014910.1 KEGG: rme:Rmet_1473 retron reverse transcriptase; retron reverse transcriptase 277758 10102275 Alide_0252 Alicycliphilus denitrificans BC retron reverse transcriptase YP_004124923.1 276730 D 596153 CDS YP_004124924.1 319760987 10102276 complement(277930..278247) 1 NC_014910.1 KEGG: ajs:Ajs_2957 transcriptional regulator; transcriptional regulator 278247 10102276 Alide_0253 Alicycliphilus denitrificans BC transcriptional regulator YP_004124924.1 277930 R 596153 CDS YP_004124925.1 319760988 10102277 complement(278244..278573) 1 NC_014910.1 KEGG: bpr:GBP346_A0938 probable addiction module killer protein; TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; addiction module killer protein 278573 10102277 Alide_0254 Alicycliphilus denitrificans BC addiction module killer protein YP_004124925.1 278244 R 596153 CDS YP_004124926.1 319760989 10102278 complement(278679..280043) 1 NC_014910.1 PFAM: integrase family protein; KEGG: ajs:Ajs_2959 phage integrase family protein; integrase family protein 280043 10102278 Alide_0255 Alicycliphilus denitrificans BC integrase family protein YP_004124926.1 278679 R 596153 CDS YP_004124927.1 319760990 10102279 complement(284052..284594) 1 NC_014910.1 KEGG: dia:Dtpsy_0168 shikimate kinase; PFAM: shikimate kinase; shikimate kinase 284594 10102279 Alide_0256 Alicycliphilus denitrificans BC shikimate kinase YP_004124927.1 284052 R 596153 CDS YP_004124928.1 319760991 10102280 284700..285599 1 NC_014910.1 PFAM: ribonuclease BN; KEGG: ajs:Ajs_0151 ribonuclease BN; ribonuclease bn 285599 10102280 Alide_0257 Alicycliphilus denitrificans BC ribonuclease bn YP_004124928.1 284700 D 596153 CDS YP_004124929.1 319760992 10102281 285725..286441 1 NC_014910.1 KEGG: ajs:Ajs_0152 17 kDa surface antigen; hypothetical protein 286441 10102281 Alide_0258 Alicycliphilus denitrificans BC hypothetical protein YP_004124929.1 285725 D 596153 CDS YP_004124930.1 319760993 10102282 complement(286498..287271) 1 NC_014910.1 KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin-NADP reductase 287271 10102282 Alide_0259 Alicycliphilus denitrificans BC ferredoxin-NADP reductase YP_004124930.1 286498 R 596153 CDS YP_004124931.1 319760994 10102283 287464..288660 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_0172 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 288660 10102283 Alide_0260 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004124931.1 287464 D 596153 CDS YP_004124932.1 319760995 10102284 288677..290575 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: ajs:Ajs_0155 inner-membrane translocator; inner-membrane translocator 290575 10102284 Alide_0261 Alicycliphilus denitrificans BC inner-membrane translocator YP_004124932.1 288677 D 596153 CDS YP_004124933.1 319760996 10102285 290572..292110 1 NC_014910.1 KEGG: vei:Veis_0860 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 292110 10102285 Alide_0262 Alicycliphilus denitrificans BC ABC transporter YP_004124933.1 290572 D 596153 CDS YP_004124934.1 319760997 10102286 292258..295158 1 NC_014910.1 KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease; PFAM: peptidase C1A papain; SMART: peptidase C1A papain; peptidase c1a papain 295158 10102286 Alide_0263 Alicycliphilus denitrificans BC peptidase c1a papain YP_004124934.1 292258 D 596153 CDS YP_004124935.1 319760998 10102289 complement(297101..298636) 1 NC_014910.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: dia:Dtpsy_0179 Mg chelatase, subunit ChlI; SMART: AAA ATPase; mg chelatase, subunit chli 298636 10102289 Alide_0266 Alicycliphilus denitrificans BC mg chelatase, subunit chli YP_004124935.1 297101 R 596153 CDS YP_004124936.1 319760999 10102290 298775..299506 1 NC_014910.1 PFAM: Conserved hypothetical protein CHP02001; KEGG: dia:Dtpsy_0180 hypothetical protein; hypothetical protein 299506 10102290 Alide_0267 Alicycliphilus denitrificans BC hypothetical protein YP_004124936.1 298775 D 596153 CDS YP_004124937.1 319761000 10102291 299526..299864 1 NC_014910.1 PFAM: nitrogen regulatory protein P-II; KEGG: aav:Aave_0233 nitrogen regulatory protein P-II; nitrogen regulatory protein p-ii 299864 10102291 Alide_0268 Alicycliphilus denitrificans BC nitrogen regulatory protein p-ii YP_004124937.1 299526 D 596153 CDS YP_004124938.1 319761001 10102292 299887..301275 1 NC_014910.1 KEGG: ajs:Ajs_0164 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter; ammonium transporter 301275 10102292 Alide_0269 Alicycliphilus denitrificans BC ammonium transporter YP_004124938.1 299887 D 596153 CDS YP_004124939.1 319761002 10102293 301369..302247 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_5424 LysR family transcriptional regulator; LysR family transcriptional regulator 302247 10102293 Alide_0270 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124939.1 301369 D 596153 CDS YP_004124940.1 319761003 10102294 complement(302321..303196) 1 NC_014910.1 KEGG: rme:Rmet_4431 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 303196 10102294 Alide_0271 Alicycliphilus denitrificans BC 2-hydroxy-3-oxopropionate reductase YP_004124940.1 302321 R 596153 CDS YP_004124941.1 319761004 10102295 complement(303193..304623) 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: amd:AMED_3840 succinate-semialdehyde dehydrogenase (NADP+); aldehyde dehydrogenase 304623 10102295 Alide_0272 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004124941.1 303193 R 596153 CDS YP_004124942.1 319761005 10102296 complement(304623..305603) 1 NC_014910.1 KEGG: bbr:BB3069 hypothetical protein; hypothetical protein 305603 10102296 Alide_0273 Alicycliphilus denitrificans BC hypothetical protein YP_004124942.1 304623 R 596153 CDS YP_004124943.1 319761006 10102297 complement(305633..306412) 1 NC_014910.1 KEGG: mrd:Mrad2831_3256 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein 306412 10102297 Alide_0274 Alicycliphilus denitrificans BC beta-lactamase domain-containing protein YP_004124943.1 305633 R 596153 CDS YP_004124944.1 319761007 10102298 complement(306409..307635) 1 NC_014910.1 KEGG: reu:Reut_B3887 UreA/short-chain amide ABC transporter; urea/short-chain amide ABC transporter 307635 10102298 Alide_0275 Alicycliphilus denitrificans BC urea/short-chain amide ABC transporter YP_004124944.1 306409 R 596153 CDS YP_004124945.1 319761008 10102299 complement(307797..308687) 1 NC_014910.1 KEGG: esa:ESA_04058 hypothetical protein; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 308687 10102299 Alide_0276 Alicycliphilus denitrificans BC 3-hydroxyisobutyrate dehydrogenase YP_004124945.1 307797 R 596153 CDS YP_004124946.1 319761009 10102300 complement(308684..309544) 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_2534 carboxylesterase protein; alpha/beta hydrolase 309544 10102300 Alide_0277 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004124946.1 308684 R 596153 CDS YP_004124947.1 319761010 10102301 complement(309534..309884) 1 NC_014910.1 KEGG: tcu:Tcur_0017 hypothetical protein; hypothetical protein 309884 10102301 Alide_0278 Alicycliphilus denitrificans BC hypothetical protein YP_004124947.1 309534 R 596153 CDS YP_004124948.1 319761011 10102302 complement(309967..311034) 1 NC_014910.1 KEGG: vap:Vapar_4786 membrane protein AbrB duplication; TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase; membrane protein abrb duplication 311034 10102302 Alide_0279 Alicycliphilus denitrificans BC membrane protein abrb duplication YP_004124948.1 309967 R 596153 CDS YP_004124949.1 319761012 10102303 complement(311037..312383) 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_3318 MmgE/PrpD family protein; mmge/prpd family protein 312383 10102303 Alide_0280 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004124949.1 311037 R 596153 CDS YP_004124950.1 319761013 10102304 312538..313692 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rme:Rmet_5425 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase 313692 10102304 Alide_0281 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004124950.1 312538 D 596153 CDS YP_004124951.1 319761014 10102305 313716..314690 1 NC_014910.1 KEGG: vei:Veis_3320 hypothetical protein; hypothetical protein 314690 10102305 Alide_0282 Alicycliphilus denitrificans BC hypothetical protein YP_004124951.1 313716 D 596153 CDS YP_004124952.1 319761015 10102306 314687..316762 1 NC_014910.1 PFAM: CoA-binding domain protein; KEGG: dac:Daci_1885 CoA-binding domain-containing protein; CoA-binding protein 316762 10102306 Alide_0283 Alicycliphilus denitrificans BC CoA-binding protein YP_004124952.1 314687 D 596153 CDS YP_004124953.1 319761016 10102307 316836..317948 1 NC_014910.1 PFAM: FAD linked oxidase domain protein; KEGG: dia:Dtpsy_0184 FAD linked oxidase domain protein; fad linked oxidase domain-containing protein 317948 10102307 Alide_0284 Alicycliphilus denitrificans BC fad linked oxidase domain-containing protein YP_004124953.1 316836 D 596153 CDS YP_004124954.1 319761017 10102308 317951..318724 1 NC_014910.1 PFAM: protein of unknown function DUF1275; KEGG: dia:Dtpsy_0185 protein of unknown function DUF1275; hypothetical protein 318724 10102308 Alide_0285 Alicycliphilus denitrificans BC hypothetical protein YP_004124954.1 317951 D 596153 CDS YP_004124955.1 319761018 10102309 318761..319999 1 NC_014910.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ajs:Ajs_0168 glycolate oxidase iron-sulfur subunit; hypothetical protein 319999 10102309 Alide_0286 Alicycliphilus denitrificans BC hypothetical protein YP_004124955.1 318761 D 596153 CDS YP_004124956.1 319761019 10102310 320062..320793 1 NC_014910.1 PFAM: Fertility inhibition FinO-like; KEGG: dia:Dtpsy_0187 ProQ activator of osmoprotectant transporter ProP; fertility inhibition fino-like protein 320793 10102310 Alide_0287 Alicycliphilus denitrificans BC fertility inhibition fino-like protein YP_004124956.1 320062 D 596153 CDS YP_004124957.1 319761020 10102311 complement(320851..321735) 1 NC_014910.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0174 hypothetical protein; hypothetical protein 321735 10102311 Alide_0288 Alicycliphilus denitrificans BC hypothetical protein YP_004124957.1 320851 R 596153 CDS YP_004124958.1 319761021 10102312 complement(321789..323066) 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_0193 lysophospholipid transporter LplT; major facilitator superfamily protein 323066 10102312 Alide_0289 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004124958.1 321789 R 596153 CDS YP_004124959.1 319761022 10102313 323210..324304 1 NC_014910.1 TIGRFAM: alanine racemase; KEGG: ajs:Ajs_0176 alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 324304 10102313 Alide_0290 Alicycliphilus denitrificans BC alanine racemase YP_004124959.1 323210 D 596153 CDS YP_004124960.1 319761023 10102314 324523..325542 1 NC_014910.1 KEGG: dia:Dtpsy_0196 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; cytochrome-c peroxidase 325542 10102314 Alide_0291 Alicycliphilus denitrificans BC cytochrome-c peroxidase YP_004124960.1 324523 D 596153 CDS YP_004124961.1 319761024 10102315 complement(325622..326236) 1 NC_014910.1 PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_0197 glutathione S-transferase domain protein; glutathione s-transferase domain-containing protein 326236 10102315 Alide_0292 Alicycliphilus denitrificans BC glutathione s-transferase domain-containing protein YP_004124961.1 325622 R 596153 CDS YP_004124962.1 319761025 10102316 326367..327749 1 NC_014910.1 KEGG: dia:Dtpsy_0199 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; DNA repair protein rada 327749 10102316 Alide_0293 Alicycliphilus denitrificans BC DNA repair protein rada YP_004124962.1 326367 D 596153 CDS YP_004124963.1 319761026 10102317 complement(327753..328739) 1 NC_014910.1 KEGG: rme:Rmet_1769 hypothetical protein; hypothetical protein 328739 10102317 Alide_0294 Alicycliphilus denitrificans BC hypothetical protein YP_004124963.1 327753 R 596153 CDS YP_004124964.1 319761027 10102318 complement(328764..330188) 1 NC_014910.1 PFAM: Amidase; KEGG: reh:H16_A1882 Asp-tRNA Asn / Glu-tRNA Gln amidotransferase A subunit or related amidase; amidase 330188 10102318 Alide_0295 Alicycliphilus denitrificans BC amidase YP_004124964.1 328764 R 596153 CDS YP_004124965.1 319761028 10102319 330354..330770 1 NC_014910.1 KEGG: ajs:Ajs_0181 hypothetical protein; hypothetical protein 330770 10102319 Alide_0296 Alicycliphilus denitrificans BC hypothetical protein YP_004124965.1 330354 D 596153 CDS YP_004124966.1 319761029 10102320 330815..331753 1 NC_014910.1 KEGG: ajs:Ajs_0182 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; branched-chain amino acid aminotransferase 331753 10102320 Alide_0297 Alicycliphilus denitrificans BC branched-chain amino acid aminotransferase YP_004124966.1 330815 D 596153 CDS YP_004124967.1 319761030 10102321 331761..331967 1 NC_014910.1 PFAM: Zinc finger, CHCC-type; KEGG: ajs:Ajs_0183 hypothetical protein; zinc finger, chcc-type 331967 10102321 Alide_0298 Alicycliphilus denitrificans BC zinc finger, chcc-type YP_004124967.1 331761 D 596153 CDS YP_004124968.1 319761031 10102322 332042..333394 1 NC_014910.1 PFAM: O-antigen polymerase; KEGG: ajs:Ajs_0184 O-antigen polymerase; o-antigen polymerase 333394 10102322 Alide_0299 Alicycliphilus denitrificans BC o-antigen polymerase YP_004124968.1 332042 D 596153 CDS YP_004124969.1 319761032 10102323 333387..334502 1 NC_014910.1 PFAM: glycosyl transferase group 1; KEGG: ajs:Ajs_0185 glycosyl transferase, group 1; group 1 glycosyl transferase 334502 10102323 Alide_0300 Alicycliphilus denitrificans BC group 1 glycosyl transferase YP_004124969.1 333387 D 596153 CDS YP_004124970.1 319761033 10102324 334499..335545 1 NC_014910.1 PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0186 glycosyl transferase family protein; family 2 glycosyl transferase 335545 10102324 Alide_0301 Alicycliphilus denitrificans BC family 2 glycosyl transferase YP_004124970.1 334499 D 596153 CDS YP_004124971.1 319761034 10102325 335542..336516 1 NC_014910.1 KEGG: ajs:Ajs_0187 hypothetical protein; hypothetical protein 336516 10102325 Alide_0302 Alicycliphilus denitrificans BC hypothetical protein YP_004124971.1 335542 D 596153 CDS YP_004124972.1 319761035 10102326 complement(336585..337649) 1 NC_014910.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_0188 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 337649 10102326 Alide_0303 Alicycliphilus denitrificans BC 2-nitropropane dioxygenase YP_004124972.1 336585 R 596153 CDS YP_004124973.1 319761036 10102327 complement(337646..338512) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0189 LysR family transcriptional regulator; LysR family transcriptional regulator 338512 10102327 Alide_0304 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124973.1 337646 R 596153 CDS YP_004124974.1 319761037 10102328 338568..339797 1 NC_014910.1 KEGG: dia:Dtpsy_0209 protein of unknown function DUF1228; hypothetical protein 339797 10102328 Alide_0305 Alicycliphilus denitrificans BC hypothetical protein YP_004124974.1 338568 D 596153 CDS YP_004124975.1 319761038 10102329 complement(339801..340520) 1 NC_014910.1 PFAM: MOSC domain containing protein; KEGG: dia:Dtpsy_0210 MOSC domain containing protein; MOSC-domain-containing protein 340520 10102329 Alide_0306 Alicycliphilus denitrificans BC MOSC-domain-containing protein YP_004124975.1 339801 R 596153 CDS YP_004124976.1 319761039 10102330 complement(340517..341077) 1 NC_014910.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dia:Dtpsy_0211 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 341077 10102330 Alide_0307 Alicycliphilus denitrificans BC alkyl hydroperoxide reductase YP_004124976.1 340517 R 596153 CDS YP_004124977.1 319761040 10102331 complement(341096..341590) 1 NC_014910.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: oca:OCAR_5014 activator of HSP90 ATPase 1 family protein; activator of hsp90 atpase 1 family protein 341590 10102331 Alide_0308 Alicycliphilus denitrificans BC activator of hsp90 atpase 1 family protein YP_004124977.1 341096 R 596153 CDS YP_004124978.1 319761041 10102332 complement(341690..342151) 1 NC_014910.1 PFAM: MaoC domain protein dehydratase; KEGG: dac:Daci_0013 dehydratase; MaoC domain-containing protein 342151 10102332 Alide_0309 Alicycliphilus denitrificans BC MaoC domain-containing protein YP_004124978.1 341690 R 596153 CDS YP_004124979.1 319761042 10102333 complement(342173..343144) 1 NC_014910.1 KEGG: dac:Daci_0012 hypothetical protein; hypothetical protein 343144 10102333 Alide_0310 Alicycliphilus denitrificans BC hypothetical protein YP_004124979.1 342173 R 596153 CDS YP_004124980.1 319761043 10102334 343298..344227 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_0011 LysR family transcriptional regulator; LysR family transcriptional regulator 344227 10102334 Alide_0311 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004124980.1 343298 D 596153 CDS YP_004124981.1 319761044 10102335 344352..345518 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_0010 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 345518 10102335 Alide_0312 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004124981.1 344352 D 596153 CDS YP_004124982.1 319761045 10102336 complement(345536..346747) 1 NC_014910.1 KEGG: dia:Dtpsy_0212 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 346747 10102336 Alide_0313 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004124982.1 345536 R 596153 CDS YP_004124983.1 319761046 10102337 complement(346757..347467) 1 NC_014910.1 KEGG: ajs:Ajs_0194 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 347467 10102337 Alide_0314 Alicycliphilus denitrificans BC response regulator receiver YP_004124983.1 346757 R 596153 CDS YP_004124984.1 319761047 10102338 complement(347563..348921) 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_0214 major facilitator superfamily MFS_1; major facilitator superfamily protein 348921 10102338 Alide_0315 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004124984.1 347563 R 596153 CDS YP_004124985.1 319761048 10102339 348931..349596 1 NC_014910.1 KEGG: dia:Dtpsy_0215 transcriptional regulator, AraC family; PFAM: Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain; cupin 2 barrel domain-containing protein 349596 10102339 Alide_0316 Alicycliphilus denitrificans BC cupin 2 barrel domain-containing protein YP_004124985.1 348931 D 596153 CDS YP_004124986.1 319761049 10102340 349710..350603 1 NC_014910.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0201 hypothetical protein; hypothetical protein 350603 10102340 Alide_0317 Alicycliphilus denitrificans BC hypothetical protein YP_004124986.1 349710 D 596153 CDS YP_004124987.1 319761050 10102341 350600..351454 1 NC_014910.1 PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_0203 peptidase M48, Ste24p; peptidase m48 ste24p 351454 10102341 Alide_0318 Alicycliphilus denitrificans BC peptidase m48 ste24p YP_004124987.1 350600 D 596153 CDS YP_004124988.1 319761051 10102344 complement(352011..352766) 1 NC_014910.1 KEGG: ajs:Ajs_0204 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 352766 10102344 Alide_0321 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004124988.1 352011 R 596153 CDS YP_004124989.1 319761052 10102345 complement(352768..354474) 1 NC_014910.1 KEGG: lch:Lcho_3364 sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; Activator of aromatic catabolism; 4-vinyl reductase 4VR; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 354474 10102345 Alide_0322 Alicycliphilus denitrificans BC sigma-54 factor interaction domain-containing protein YP_004124989.1 352768 R 596153 CDS YP_004124990.1 319761053 10102346 354706..355017 1 NC_014910.1 PFAM: Phenol hydroxylase subunit; KEGG: avn:Avin_30760 multi-component phenol hydoxylase, assembly subunit; LapK; phenol hydroxylase subunit 355017 10102346 Alide_0323 Alicycliphilus denitrificans BC phenol hydroxylase subunit YP_004124990.1 354706 D 596153 CDS YP_004124991.1 319761054 10102347 355061..356053 1 NC_014910.1 KEGG: azo:azo2443 phenol hydroxylase, subunit P1; PFAM: methane/phenol/toluene hydroxylase; phenol 2-monooxygenase 356053 10102347 Alide_0324 Alicycliphilus denitrificans BC phenol 2-monooxygenase YP_004124991.1 355061 D 596153 CDS YP_004124992.1 319761055 10102348 356076..356345 1 NC_014910.1 PFAM: monooxygenase component MmoB/DmpM; KEGG: azo:azo2442 phenol hydrolase, subunit P2; monooxygenase component mmob/dmpm 356345 10102348 Alide_0325 Alicycliphilus denitrificans BC monooxygenase component mmob/dmpm YP_004124992.1 356076 D 596153 CDS YP_004124993.1 319761056 10102349 356371..357918 1 NC_014910.1 PFAM: methane/phenol/toluene hydroxylase; YHS domain-containing protein; KEGG: azo:azo2441 phenol hydroxylase, subunit P3; methane/phenol/toluene hydroxylase 357918 10102349 Alide_0326 Alicycliphilus denitrificans BC methane/phenol/toluene hydroxylase YP_004124993.1 356371 D 596153 CDS YP_004124994.1 319761057 10102350 357985..358341 1 NC_014910.1 PFAM: Phenol hydroxylase conserved region; KEGG: rpf:Rpic12D_3551 phenol hydroxylase conserved region; phenol hydroxylase 358341 10102350 Alide_0327 Alicycliphilus denitrificans BC phenol hydroxylase YP_004124994.1 357985 D 596153 CDS YP_004124995.1 319761058 10102351 358412..359482 1 NC_014910.1 PFAM: Oxidoreductase FAD-binding domain protein; ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: azo:azo1850 phenol 2-monooxygenase; oxidoreductase FAD-binding domain-containing protein 359482 10102351 Alide_0328 Alicycliphilus denitrificans BC oxidoreductase FAD-binding domain-containing protein YP_004124995.1 358412 D 596153 CDS YP_004124996.1 319761059 10102352 359496..359837 1 NC_014910.1 PFAM: ferredoxin; KEGG: ajs:Ajs_0217 ferredoxin; ferredoxin 359837 10102352 Alide_0329 Alicycliphilus denitrificans BC ferredoxin YP_004124996.1 359496 D 596153 CDS YP_004124997.1 319761060 10102353 359860..360786 1 NC_014910.1 KEGG: ajs:Ajs_0218 catechol 2,3-dioxygenase; TIGRFAM: catechol 2,3 dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; catechol 2,3 dioxygenase 360786 10102353 Alide_0330 Alicycliphilus denitrificans BC catechol 2,3 dioxygenase YP_004124997.1 359860 D 596153 CDS YP_004124998.1 319761061 10102354 360786..361217 1 NC_014910.1 PFAM: protein of unknown function DUF336; KEGG: ajs:Ajs_0219 hypothetical protein; hypothetical protein 361217 10102354 Alide_0331 Alicycliphilus denitrificans BC hypothetical protein YP_004124998.1 360786 D 596153 CDS YP_004124999.1 319761062 10102357 362556..363461 1 NC_014910.1 KEGG: ctt:CtCNB1_3154 ZorfX; hypothetical protein 363461 10102357 Alide_0334 Alicycliphilus denitrificans BC hypothetical protein YP_004124999.1 362556 D 596153 CDS YP_004125000.1 319761063 10102358 364232..365692 1 NC_014910.1 KEGG: ajs:Ajs_0220 betaine-aldehyde dehydrogenase; TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; 2-hydroxymuconic semialdehyde dehydrogenase 365692 10102358 Alide_0335 Alicycliphilus denitrificans BC 2-hydroxymuconic semialdehyde dehydrogenase YP_004125000.1 364232 D 596153 CDS YP_004125001.1 319761064 10102359 365754..366617 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: ctt:CtCNB1_3150 alpha/beta hydrolase fold protein; alpha/beta hydrolase 366617 10102359 Alide_0336 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004125001.1 365754 D 596153 CDS YP_004125002.1 319761065 10102360 366622..367404 1 NC_014910.1 TIGRFAM: 2-oxopent-4-enoate hydratase; KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase; 2-oxopent-4-enoate hydratase 367404 10102360 Alide_0337 Alicycliphilus denitrificans BC 2-oxopent-4-enoate hydratase YP_004125002.1 366622 D 596153 CDS YP_004125003.1 319761066 10102361 367423..368337 1 NC_014910.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: ajs:Ajs_0223 acetaldehyde dehydrogenase; PFAM: Acetaldehyde dehydrogenase ; Semialdehyde dehydrogenase NAD - binding; acetaldehyde dehydrogenase 368337 10102361 Alide_0338 Alicycliphilus denitrificans BC acetaldehyde dehydrogenase YP_004125003.1 367423 D 596153 CDS YP_004125004.1 319761067 10102362 368352..369389 1 NC_014910.1 KEGG: ajs:Ajs_0224 4-hydroxy-2-ketovalerate aldolase; TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; PFAM: pyruvate carboxyltransferase; DmpG communication domain protein; 4-hydroxy-2-oxovalerate aldolase 369389 10102362 Alide_0339 Alicycliphilus denitrificans BC 4-hydroxy-2-oxovalerate aldolase YP_004125004.1 368352 D 596153 CDS YP_004125005.1 319761068 10102363 369423..370211 1 NC_014910.1 TIGRFAM: 4-oxalocrotonate decarboxylase; KEGG: ajs:Ajs_0225 4-oxalocrotonate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-oxalocrotonate decarboxylase 370211 10102363 Alide_0340 Alicycliphilus denitrificans BC 4-oxalocrotonate decarboxylase YP_004125005.1 369423 D 596153 CDS YP_004125006.1 319761069 10102364 370252..371220 1 NC_014910.1 KEGG: ctt:CtCNB1_3145 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 371220 10102364 Alide_0341 Alicycliphilus denitrificans BC twin-arginine translocation pathway signal YP_004125006.1 370252 D 596153 CDS YP_004125007.1 319761070 10102365 371247..371438 1 NC_014910.1 KEGG: ajs:Ajs_0227 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 371438 10102365 Alide_0342 Alicycliphilus denitrificans BC 4-oxalocrotonate tautomerase YP_004125007.1 371247 D 596153 CDS YP_004125008.1 319761071 10102366 complement(371503..372141) 1 NC_014910.1 KEGG: ajs:Ajs_0228 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein 372141 10102366 Alide_0343 Alicycliphilus denitrificans BC beta-lactamase domain-containing protein YP_004125008.1 371503 R 596153 CDS YP_004125009.1 319761072 10102367 complement(372207..372959) 1 NC_014910.1 KEGG: dac:Daci_4281 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 372959 10102367 Alide_0344 Alicycliphilus denitrificans BC regulatory protein iclr YP_004125009.1 372207 R 596153 CDS YP_004125010.1 319761073 10102368 373084..374064 1 NC_014910.1 KEGG: dac:Daci_4280 hypothetical protein; hypothetical protein 374064 10102368 Alide_0345 Alicycliphilus denitrificans BC hypothetical protein YP_004125010.1 373084 D 596153 CDS YP_004125011.1 319761074 10102369 374072..374944 1 NC_014910.1 PFAM: amidohydrolase 2; KEGG: dac:Daci_4279 amidohydrolase 2; amidohydrolase 374944 10102369 Alide_0346 Alicycliphilus denitrificans BC amidohydrolase YP_004125011.1 374072 D 596153 CDS YP_004125012.1 319761075 10102370 374967..375956 1 NC_014910.1 KEGG: dac:Daci_4278 hypothetical protein; hypothetical protein 375956 10102370 Alide_0347 Alicycliphilus denitrificans BC hypothetical protein YP_004125012.1 374967 D 596153 CDS YP_004125013.1 319761076 10102371 375989..376675 1 NC_014910.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4277 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 376675 10102371 Alide_0348 Alicycliphilus denitrificans BC dimethylmenaquinone methyltransferase YP_004125013.1 375989 D 596153 CDS YP_004125014.1 319761077 10102372 376672..377589 1 NC_014910.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vap:Vapar_5586 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 377589 10102372 Alide_0349 Alicycliphilus denitrificans BC d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein YP_004125014.1 376672 D 596153 CDS YP_004125015.1 319761078 10102373 377614..378603 1 NC_014910.1 KEGG: vap:Vapar_3894 hypothetical protein; hypothetical protein 378603 10102373 Alide_0350 Alicycliphilus denitrificans BC hypothetical protein YP_004125015.1 377614 D 596153 CDS YP_004125016.1 319761079 10102374 378950..379906 1 NC_014910.1 KEGG: dac:Daci_4274 hypothetical protein; hypothetical protein 379906 10102374 Alide_0351 Alicycliphilus denitrificans BC hypothetical protein YP_004125016.1 378950 D 596153 CDS YP_004125017.1 319761080 10102375 379912..380787 1 NC_014910.1 PFAM: amidohydrolase 2; KEGG: dac:Daci_4273 amidohydrolase 2; amidohydrolase 380787 10102375 Alide_0352 Alicycliphilus denitrificans BC amidohydrolase YP_004125017.1 379912 D 596153 CDS YP_004125018.1 319761081 10102376 380800..381717 1 NC_014910.1 PFAM: SMP-30/Gluconolaconase/LRE-like region-containing protein; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain-containing protein; smp-30/gluconolaconase/lre-like region-containing protein 381717 10102376 Alide_0353 Alicycliphilus denitrificans BC smp-30/gluconolaconase/lre-like region-containing protein YP_004125018.1 380800 D 596153 CDS YP_004125019.1 319761082 10102377 complement(381729..382712) 1 NC_014910.1 KEGG: rme:Rmet_4433 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein 382712 10102377 Alide_0354 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125019.1 381729 R 596153 CDS YP_004125020.1 319761083 10102378 complement(382731..383624) 1 NC_014910.1 KEGG: vei:Veis_2089 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 383624 10102378 Alide_0355 Alicycliphilus denitrificans BC 3-hydroxyisobutyrate dehydrogenase YP_004125020.1 382731 R 596153 CDS YP_004125021.1 319761084 10102379 complement(383647..385098) 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: vei:Veis_2088 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 385098 10102379 Alide_0356 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004125021.1 383647 R 596153 CDS YP_004125022.1 319761085 10102380 complement(385293..386021) 1 NC_014910.1 KEGG: rme:Rmet_4432 IclR family transcriptional regulator family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 386021 10102380 Alide_0357 Alicycliphilus denitrificans BC regulatory protein iclr YP_004125022.1 385293 R 596153 CDS YP_004125023.1 319761086 10102381 386294..386698 1 NC_014910.1 KEGG: tcu:Tcur_0017 hypothetical protein; hypothetical protein 386698 10102381 Alide_0358 Alicycliphilus denitrificans BC hypothetical protein YP_004125023.1 386294 D 596153 CDS YP_004125024.1 319761087 10102382 386719..387567 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_2534 carboxylesterase protein; alpha/beta hydrolase 387567 10102382 Alide_0359 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004125024.1 386719 D 596153 CDS YP_004125025.1 319761088 10102383 387622..388776 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: bav:BAV0983 ABC transporter, substrate-binding protein; ABC transporter substrate-binding protein 388776 10102383 Alide_0360 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125025.1 387622 D 596153 CDS YP_004125026.1 319761089 10102384 388798..389667 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: bav:BAV0982 ABC transporter, permease protein; inner-membrane translocator 389667 10102384 Alide_0361 Alicycliphilus denitrificans BC inner-membrane translocator YP_004125026.1 388798 D 596153 CDS YP_004125027.1 319761090 10102385 389672..390670 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dma:DMR_11370 ABC transporter permease protein; inner-membrane translocator 390670 10102385 Alide_0362 Alicycliphilus denitrificans BC inner-membrane translocator YP_004125027.1 389672 D 596153 CDS YP_004125028.1 319761091 10102386 390667..391446 1 NC_014910.1 KEGG: pth:PTH_2348 ABC-type branched-chain amino acid transport systems, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 391446 10102386 Alide_0363 Alicycliphilus denitrificans BC ABC transporter YP_004125028.1 390667 D 596153 CDS YP_004125029.1 319761092 10102387 391433..392146 1 NC_014910.1 KEGG: oan:Oant_4420 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 392146 10102387 Alide_0364 Alicycliphilus denitrificans BC ABC transporter YP_004125029.1 391433 D 596153 CDS YP_004125030.1 319761093 10102388 392149..393171 1 NC_014910.1 PFAM: amidohydrolase 2; KEGG: bbr:BB2353 hypothetical protein; amidohydrolase 393171 10102388 Alide_0365 Alicycliphilus denitrificans BC amidohydrolase YP_004125030.1 392149 D 596153 CDS YP_004125031.1 319761094 10102389 complement(393156..393887) 1 NC_014910.1 KEGG: ajs:Ajs_0229 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 393887 10102389 Alide_0366 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004125031.1 393156 R 596153 CDS YP_004125032.1 319761095 10102390 393971..395173 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 395173 10102390 Alide_0367 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004125032.1 393971 D 596153 CDS YP_004125033.1 319761096 10102391 395170..395943 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_0225 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 395943 10102391 Alide_0368 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004125033.1 395170 D 596153 CDS YP_004125034.1 319761097 10102392 395940..396980 1 NC_014910.1 PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 396980 10102392 Alide_0369 Alicycliphilus denitrificans BC aminoglycoside phosphotransferase YP_004125034.1 395940 D 596153 CDS YP_004125035.1 319761098 10102393 complement(397078..397878) 1 NC_014910.1 TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: dia:Dtpsy_0227 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 397878 10102393 Alide_0370 Alicycliphilus denitrificans BC exodeoxyribonuclease III YP_004125035.1 397078 R 596153 CDS YP_004125036.1 319761099 10102394 397889..398587 1 NC_014910.1 TIGRFAM: orotate phosphoribosyltransferase; KEGG: dia:Dtpsy_0228 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 398587 10102394 Alide_0371 Alicycliphilus denitrificans BC orotate phosphoribosyltransferase YP_004125036.1 397889 D 596153 CDS YP_004125037.1 319761100 10102395 398608..399312 1 NC_014910.1 KEGG: dia:Dtpsy_0229 hypothetical protein; hypothetical protein 399312 10102395 Alide_0372 Alicycliphilus denitrificans BC hypothetical protein YP_004125037.1 398608 D 596153 CDS YP_004125038.1 319761101 10102396 complement(399381..400826) 1 NC_014910.1 KEGG: dac:Daci_0351 glutamyl-tRNA(Gln) amidotransferase, B subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase; glutamyl-tRNA(gln) amidotransferase, b subunit 400826 10102396 Alide_0373 Alicycliphilus denitrificans BC glutamyl-tRNA(gln) amidotransferase, b subunit YP_004125038.1 399381 R 596153 CDS YP_004125039.1 319761102 10102397 complement(400829..402319) 1 NC_014910.1 KEGG: ajs:Ajs_0237 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; glutamyl-tRNA(gln) amidotransferase, a subunit 402319 10102397 Alide_0374 Alicycliphilus denitrificans BC glutamyl-tRNA(gln) amidotransferase, a subunit YP_004125039.1 400829 R 596153 CDS YP_004125040.1 319761103 10102398 complement(402316..402615) 1 NC_014910.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; KEGG: aav:Aave_0293 aspartyl/glutamyl-tRNA amidotransferase subunit C; glutamyl-tRNA(gln) amidotransferase, c subunit 402615 10102398 Alide_0375 Alicycliphilus denitrificans BC glutamyl-tRNA(gln) amidotransferase, c subunit YP_004125040.1 402316 R 596153 CDS YP_004125041.1 319761104 10102399 402821..403864 1 NC_014910.1 KEGG: dia:Dtpsy_0233 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell shape determining protein, mreb/mrl family 403864 10102399 Alide_0376 Alicycliphilus denitrificans BC cell shape determining protein, mreb/mrl family YP_004125041.1 402821 D 596153 CDS YP_004125042.1 319761105 10102400 403894..404811 1 NC_014910.1 KEGG: ajs:Ajs_0240 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; rod shape-determining protein mrec 404811 10102400 Alide_0377 Alicycliphilus denitrificans BC rod shape-determining protein mrec YP_004125042.1 403894 D 596153 CDS YP_004125043.1 319761106 10102401 404808..405329 1 NC_014910.1 KEGG: ajs:Ajs_0241 rod shape-determining MreD transmembrane protein; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; rod shape-determining protein mred 405329 10102401 Alide_0378 Alicycliphilus denitrificans BC rod shape-determining protein mred YP_004125043.1 404808 D 596153 CDS YP_004125044.1 319761107 10102402 405346..407289 1 NC_014910.1 TIGRFAM: penicillin-binding protein 2; KEGG: dia:Dtpsy_0236 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 407289 10102402 Alide_0379 Alicycliphilus denitrificans BC penicillin-binding protein 2 YP_004125044.1 405346 D 596153 CDS YP_004125045.1 319761108 10102403 complement(407305..408216) 1 NC_014910.1 KEGG: dia:Dtpsy_0241 arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; arginase 408216 10102403 Alide_0380 Alicycliphilus denitrificans BC arginase YP_004125045.1 407305 R 596153 CDS YP_004125046.1 319761109 10102404 complement(408230..408988) 1 NC_014910.1 PFAM: protein of unknown function DUF81; KEGG: aav:Aave_0304 hypothetical protein; hypothetical protein 408988 10102404 Alide_0381 Alicycliphilus denitrificans BC hypothetical protein YP_004125046.1 408230 R 596153 CDS YP_004125047.1 319761110 10102405 complement(409235..410917) 1 NC_014910.1 KEGG: ajs:Ajs_0249 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; choline dehydrogenase 410917 10102405 Alide_0382 Alicycliphilus denitrificans BC choline dehydrogenase YP_004125047.1 409235 R 596153 CDS YP_004125048.1 319761111 10102406 411136..412302 1 NC_014910.1 PFAM: protein of unknown function DUF140; KEGG: ajs:Ajs_0250 hypothetical protein; hypothetical protein 412302 10102406 Alide_0383 Alicycliphilus denitrificans BC hypothetical protein YP_004125048.1 411136 D 596153 CDS YP_004125049.1 319761112 10102407 412305..413108 1 NC_014910.1 KEGG: ajs:Ajs_0251 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 413108 10102407 Alide_0384 Alicycliphilus denitrificans BC ABC transporter YP_004125049.1 412305 D 596153 CDS YP_004125050.1 319761113 10102408 413108..414085 1 NC_014910.1 PFAM: Mammalian cell entry related domain protein; KEGG: dia:Dtpsy_0246 mammalian cell entry related domain protein; mammalian cell entry related domain-containing protein 414085 10102408 Alide_0385 Alicycliphilus denitrificans BC mammalian cell entry related domain-containing protein YP_004125050.1 413108 D 596153 CDS YP_004125051.1 319761114 10102409 414096..414776 1 NC_014910.1 PFAM: protein of unknown function DUF330; KEGG: ajs:Ajs_0253 lipoprotein; hypothetical protein 414776 10102409 Alide_0386 Alicycliphilus denitrificans BC hypothetical protein YP_004125051.1 414096 D 596153 CDS YP_004125052.1 319761115 10102411 415230..416159 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_6198 LysR family transcriptional regulator; LysR family transcriptional regulator 416159 10102411 Alide_0388 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125052.1 415230 D 596153 CDS YP_004125053.1 319761116 10102412 416240..418249 1 NC_014910.1 PFAM: aconitate hydratase domain-containing protein; KEGG: cti:RALTA_B0856 hydrolyase; aconitate hydratase domain-containing protein 418249 10102412 Alide_0389 Alicycliphilus denitrificans BC aconitate hydratase domain-containing protein YP_004125053.1 416240 D 596153 CDS YP_004125054.1 319761117 10102413 418287..419276 1 NC_014910.1 KEGG: cti:RALTA_B0858 conserved hypothetical protein; UPF0065; hypothetical protein 419276 10102413 Alide_0390 Alicycliphilus denitrificans BC hypothetical protein YP_004125054.1 418287 D 596153 CDS YP_004125055.1 319761118 10102414 419285..419818 1 NC_014910.1 KEGG: mmi:MMAR_5403 ribonuclease activity regulator protein RraA; TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; regulator of ribonuclease activity a 419818 10102414 Alide_0391 Alicycliphilus denitrificans BC regulator of ribonuclease activity a YP_004125055.1 419285 D 596153 CDS YP_004125056.1 319761119 10102415 complement(419769..420404) 1 NC_014910.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dia:Dtpsy_0253 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (marc)-like protein 420404 10102415 Alide_0392 Alicycliphilus denitrificans BC multiple antibiotic resistance (marc)-like protein YP_004125056.1 419769 R 596153 CDS YP_004125057.1 319761120 10102416 420518..421207 1 NC_014910.1 KEGG: dia:Dtpsy_0255 carboxymethylenebutenolidase; carboxymethylenebutenolidase 421207 10102416 Alide_0393 Alicycliphilus denitrificans BC carboxymethylenebutenolidase YP_004125057.1 420518 D 596153 CDS YP_004125058.1 319761121 10102417 complement(421271..422839) 1 NC_014910.1 KEGG: dia:Dtpsy_0256 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 422839 10102417 Alide_0394 Alicycliphilus denitrificans BC EmrB/QacA family drug resistance transporter YP_004125058.1 421271 R 596153 CDS YP_004125059.1 319761122 10102418 complement(422842..424041) 1 NC_014910.1 PFAM: secretion protein HlyD family protein; KEGG: ajs:Ajs_0262 secretion protein HlyD family protein; secretion protein hlyd family protein 424041 10102418 Alide_0395 Alicycliphilus denitrificans BC secretion protein hlyd family protein YP_004125059.1 422842 R 596153 CDS YP_004125060.1 319761123 10102419 complement(424076..425497) 1 NC_014910.1 KEGG: dia:Dtpsy_0258 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family 425497 10102419 Alide_0396 Alicycliphilus denitrificans BC rnd efflux system, outer membrane lipoprotein, nodt family YP_004125060.1 424076 R 596153 CDS YP_004125061.1 319761124 10102420 complement(425527..426039) 1 NC_014910.1 KEGG: ajs:Ajs_0264 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; regulatory protein marr 426039 10102420 Alide_0397 Alicycliphilus denitrificans BC regulatory protein marr YP_004125061.1 425527 R 596153 CDS YP_004125062.1 319761125 10102421 complement(426111..427286) 1 NC_014910.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: dia:Dtpsy_0260 Mg2 transporter protein CorA family protein; mg2 transporter protein cora family protein 427286 10102421 Alide_0398 Alicycliphilus denitrificans BC mg2 transporter protein cora family protein YP_004125062.1 426111 R 596153 CDS YP_004125063.1 319761126 10102422 complement(427326..428354) 1 NC_014910.1 KEGG: ajs:Ajs_0266 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; porphobilinogen synthase 428354 10102422 Alide_0399 Alicycliphilus denitrificans BC porphobilinogen synthase YP_004125063.1 427326 R 596153 CDS YP_004125064.1 319761127 10102423 428387..429109 1 NC_014910.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: dia:Dtpsy_0262 biotin/lipoate A/B protein ligase; biotin/lipoate a/b protein ligase 429109 10102423 Alide_0400 Alicycliphilus denitrificans BC biotin/lipoate a/b protein ligase YP_004125064.1 428387 D 596153 CDS YP_004125065.1 319761128 10102424 429257..429685 1 NC_014910.1 PFAM: Uncharacterised protein family UPF0093; KEGG: dia:Dtpsy_0263 hypothetical protein; hypothetical protein 429685 10102424 Alide_0401 Alicycliphilus denitrificans BC hypothetical protein YP_004125065.1 429257 D 596153 CDS YP_004125066.1 319761129 10102425 429711..430808 1 NC_014910.1 PFAM: VanZ family protein; KEGG: ajs:Ajs_0269 VanZ family protein; vanz family protein 430808 10102425 Alide_0402 Alicycliphilus denitrificans BC vanz family protein YP_004125066.1 429711 D 596153 CDS YP_004125067.1 319761130 10102426 430818..431159 1 NC_014910.1 KEGG: dia:Dtpsy_0265 ferredoxin-like protein; ferredoxin-like protein 431159 10102426 Alide_0403 Alicycliphilus denitrificans BC ferredoxin-like protein YP_004125067.1 430818 D 596153 CDS YP_004125068.1 319761131 10102427 431243..431878 1 NC_014910.1 KEGG: dia:Dtpsy_0266 transmembrane protein; transmembrane protein 431878 10102427 Alide_0404 Alicycliphilus denitrificans BC transmembrane protein YP_004125068.1 431243 D 596153 CDS YP_004125069.1 319761132 10102428 431980..433143 1 NC_014910.1 KEGG: ajs:Ajs_0272 penicillin-binding protein 6; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; beta-lactamase 433143 10102428 Alide_0405 Alicycliphilus denitrificans BC beta-lactamase YP_004125069.1 431980 D 596153 CDS YP_004125070.1 319761133 10102429 433245..433622 1 NC_014910.1 KEGG: dia:Dtpsy_0268 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; 30S ribosomal protein S12 433622 10102429 Alide_0406 Alicycliphilus denitrificans BC 30S ribosomal protein S12 YP_004125070.1 433245 D 596153 CDS YP_004125071.1 319761134 10102430 433786..434259 1 NC_014910.1 KEGG: dia:Dtpsy_0269 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; 30S ribosomal protein S7 434259 10102430 Alide_0407 Alicycliphilus denitrificans BC 30S ribosomal protein S7 YP_004125071.1 433786 D 596153 CDS YP_004125072.1 319761135 10102431 434346..436454 1 NC_014910.1 KEGG: ajs:Ajs_0275 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; translation elongation factor g 436454 10102431 Alide_0408 Alicycliphilus denitrificans BC translation elongation factor g YP_004125072.1 434346 D 596153 CDS YP_004125073.1 319761136 10102432 436688..437878 1 NC_014910.1 KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; translation elongation factor tu 437878 10102432 Alide_0409 Alicycliphilus denitrificans BC translation elongation factor tu YP_004125073.1 436688 D 596153 CDS YP_004125074.1 319761137 10102433 437906..438217 1 NC_014910.1 KEGG: vei:Veis_1263 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; 30S ribosomal protein S10 438217 10102433 Alide_0410 Alicycliphilus denitrificans BC 30S ribosomal protein S10 YP_004125074.1 437906 D 596153 CDS YP_004125075.1 319761138 10102434 438434..439108 1 NC_014910.1 KEGG: dia:Dtpsy_0273 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; 50S ribosomal protein L3 439108 10102434 Alide_0411 Alicycliphilus denitrificans BC 50S ribosomal protein L3 YP_004125075.1 438434 D 596153 CDS YP_004125076.1 319761139 10102435 439108..439728 1 NC_014910.1 PFAM: ribosomal protein L4/L1e; KEGG: dia:Dtpsy_0274 50S ribosomal protein L4; 50S ribosomal protein L4/l1e 439728 10102435 Alide_0412 Alicycliphilus denitrificans BC 50S ribosomal protein L4/l1e YP_004125076.1 439108 D 596153 CDS YP_004125077.1 319761140 10102436 439725..440039 1 NC_014910.1 PFAM: Ribosomal protein L25/L23; KEGG: dia:Dtpsy_0275 50S ribosomal protein L23; 50S ribosomal protein L25/l23 440039 10102436 Alide_0413 Alicycliphilus denitrificans BC 50S ribosomal protein L25/l23 YP_004125077.1 439725 D 596153 CDS YP_004125078.1 319761141 10102437 440042..440866 1 NC_014910.1 KEGG: dia:Dtpsy_0276 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; 50S ribosomal protein L2 440866 10102437 Alide_0414 Alicycliphilus denitrificans BC 50S ribosomal protein L2 YP_004125078.1 440042 D 596153 CDS YP_004125079.1 319761142 10102438 440877..441152 1 NC_014910.1 KEGG: dac:Daci_0395 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; 30S ribosomal protein S19 441152 10102438 Alide_0415 Alicycliphilus denitrificans BC 30S ribosomal protein S19 YP_004125079.1 440877 D 596153 CDS YP_004125080.1 319761143 10102439 441162..441494 1 NC_014910.1 KEGG: dac:Daci_0396 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; 50S ribosomal protein L22 441494 10102439 Alide_0416 Alicycliphilus denitrificans BC 50S ribosomal protein L22 YP_004125080.1 441162 D 596153 CDS YP_004125081.1 319761144 10102440 441512..442384 1 NC_014910.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: aav:Aave_0344 30S ribosomal protein S3; SMART: KH domain protein; 30S ribosomal protein S3 442384 10102440 Alide_0417 Alicycliphilus denitrificans BC 30S ribosomal protein S3 YP_004125081.1 441512 D 596153 CDS YP_004125082.1 319761145 10102441 442387..442803 1 NC_014910.1 KEGG: dia:Dtpsy_0280 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; 50S ribosomal protein L16 442803 10102441 Alide_0418 Alicycliphilus denitrificans BC 50S ribosomal protein L16 YP_004125082.1 442387 D 596153 CDS YP_004125083.1 319761146 10102442 442815..443012 1 NC_014910.1 KEGG: dia:Dtpsy_0281 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; 50S ribosomal protein L29 443012 10102442 Alide_0419 Alicycliphilus denitrificans BC 50S ribosomal protein L29 YP_004125083.1 442815 D 596153 CDS YP_004125084.1 319761147 10102443 443026..443295 1 NC_014910.1 KEGG: dia:Dtpsy_0282 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17; 30S ribosomal protein S17 443295 10102443 Alide_0420 Alicycliphilus denitrificans BC 30S ribosomal protein S17 YP_004125084.1 443026 D 596153 CDS YP_004125085.1 319761148 10102444 443375..443881 1 NC_014910.1 PFAM: Redoxin domain protein; KEGG: ajs:Ajs_0288 redoxin domain-containing protein; redoxin domain-containing protein 443881 10102444 Alide_0421 Alicycliphilus denitrificans BC redoxin domain-containing protein YP_004125085.1 443375 D 596153 CDS YP_004125086.1 319761149 10102445 complement(443987..444481) 1 NC_014910.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_0284 GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase 444481 10102445 Alide_0422 Alicycliphilus denitrificans BC Gcn5-like N-acetyltransferase YP_004125086.1 443987 R 596153 CDS YP_004125087.1 319761150 10102446 complement(444550..445278) 1 NC_014910.1 KEGG: dia:Dtpsy_0285 cytochrome b561; cytochrome b561 445278 10102446 Alide_0423 Alicycliphilus denitrificans BC cytochrome b561 YP_004125087.1 444550 R 596153 CDS YP_004125088.1 319761151 10102447 complement(445527..446030) 1 NC_014910.1 PFAM: Redoxin domain protein; KEGG: dia:Dtpsy_0287 redoxin domain protein; redoxin domain-containing protein 446030 10102447 Alide_0424 Alicycliphilus denitrificans BC redoxin domain-containing protein YP_004125088.1 445527 R 596153 CDS YP_004125089.1 319761152 10102448 446103..446753 1 NC_014910.1 KEGG: dia:Dtpsy_0288 hypothetical protein; hypothetical protein 446753 10102448 Alide_0425 Alicycliphilus denitrificans BC hypothetical protein YP_004125089.1 446103 D 596153 CDS YP_004125090.1 319761153 10102449 446775..447185 1 NC_014910.1 PFAM: PTS system fructose subfamily IIA component; KEGG: ajs:Ajs_0295 PTS system fructose subfamily IIA component; pts system fructose subfamily iia component 447185 10102449 Alide_0426 Alicycliphilus denitrificans BC pts system fructose subfamily iia component YP_004125090.1 446775 D 596153 CDS YP_004125091.1 319761154 10102450 447182..447451 1 NC_014910.1 KEGG: dia:Dtpsy_0291 phosphocarrier, HPr family; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; phosphocarrier, hpr family 447451 10102450 Alide_0427 Alicycliphilus denitrificans BC phosphocarrier, hpr family YP_004125091.1 447182 D 596153 CDS YP_004125092.1 319761155 10102451 447470..449236 1 NC_014910.1 KEGG: ajs:Ajs_0297 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; phosphoenolpyruvate-protein phosphotransferase 449236 10102451 Alide_0428 Alicycliphilus denitrificans BC phosphoenolpyruvate-protein phosphotransferase YP_004125092.1 447470 D 596153 CDS YP_004125093.1 319761156 10102452 complement(449303..450283) 1 NC_014910.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lipoic acid synthetase; KEGG: dia:Dtpsy_0293 lipoyl synthase; PFAM: Radical SAM domain protein; lipoic acid synthetase 450283 10102452 Alide_0429 Alicycliphilus denitrificans BC lipoic acid synthetase YP_004125093.1 449303 R 596153 CDS YP_004125094.1 319761157 10102453 complement(450301..450993) 1 NC_014910.1 TIGRFAM: lipoate-protein ligase B; KEGG: ajs:Ajs_0299 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B 450993 10102453 Alide_0430 Alicycliphilus denitrificans BC lipoate-protein ligase B YP_004125094.1 450301 R 596153 CDS YP_004125095.1 319761158 10102454 complement(451005..451301) 1 NC_014910.1 PFAM: protein of unknown function DUF493; KEGG: dia:Dtpsy_0295 protein of unknown function DUF493; hypothetical protein 451301 10102454 Alide_0431 Alicycliphilus denitrificans BC hypothetical protein YP_004125095.1 451005 R 596153 CDS YP_004125096.1 319761159 10102455 451585..451977 1 NC_014910.1 PFAM: ATP synthase I chain; KEGG: aav:Aave_0365 ATP synthase protein I; ATP synthase subunit I 451977 10102455 Alide_0432 Alicycliphilus denitrificans BC ATP synthase subunit I YP_004125096.1 451585 D 596153 CDS YP_004125097.1 319761160 10102456 452000..452863 1 NC_014910.1 KEGG: dia:Dtpsy_0297 F0F1 ATP synthase subunit A; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; ATP synthase F0 subunit A 452863 10102456 Alide_0433 Alicycliphilus denitrificans BC ATP synthase F0 subunit A YP_004125097.1 452000 D 596153 CDS YP_004125098.1 319761161 10102457 452915..453163 1 NC_014910.1 KEGG: dac:Daci_0415 F0F1 ATP synthase subunit C; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; ATP synthase F0 subunit C 453163 10102457 Alide_0434 Alicycliphilus denitrificans BC ATP synthase F0 subunit C YP_004125098.1 452915 D 596153 CDS YP_004125099.1 319761162 10102458 453202..453672 1 NC_014910.1 KEGG: dia:Dtpsy_0299 F0F1 ATP synthase subunit B; TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; ATP synthase F0 subunit B 453672 10102458 Alide_0435 Alicycliphilus denitrificans BC ATP synthase F0 subunit B YP_004125099.1 453202 D 596153 CDS YP_004125100.1 319761163 10102459 453691..454233 1 NC_014910.1 KEGG: dia:Dtpsy_0300 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; ATP synthase F1 subunit delta 454233 10102459 Alide_0436 Alicycliphilus denitrificans BC ATP synthase F1 subunit delta YP_004125100.1 453691 D 596153 CDS YP_004125101.1 319761164 10102460 454279..455838 1 NC_014910.1 KEGG: aav:Aave_0370 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 subunit alpha 455838 10102460 Alide_0437 Alicycliphilus denitrificans BC ATP synthase F1 subunit alpha YP_004125101.1 454279 D 596153 CDS YP_004125102.1 319761165 10102461 455857..456723 1 NC_014910.1 KEGG: dia:Dtpsy_0302 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma 456723 10102461 Alide_0438 Alicycliphilus denitrificans BC ATP synthase F1 subunit gamma YP_004125102.1 455857 D 596153 CDS YP_004125103.1 319761166 10102462 456752..458161 1 NC_014910.1 TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: dia:Dtpsy_0303 F0F1 ATP synthase subunit beta; SMART: AAA ATPase; ATP synthase F1 subunit beta 458161 10102462 Alide_0439 Alicycliphilus denitrificans BC ATP synthase F1 subunit beta YP_004125103.1 456752 D 596153 CDS YP_004125104.1 319761167 10102463 458236..458652 1 NC_014910.1 KEGG: dia:Dtpsy_0304 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; ATP synthase F1 subunit epsilon 458652 10102463 Alide_0440 Alicycliphilus denitrificans BC ATP synthase F1 subunit epsilon YP_004125104.1 458236 D 596153 CDS YP_004125105.1 319761168 10102467 460827..461639 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_2574 transcriptional regulator, LysR family; LysR family transcriptional regulator 461639 10102467 Alide_0444 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125105.1 460827 D 596153 CDS YP_004125106.1 319761169 10102468 complement(461645..462178) 1 NC_014910.1 PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein; hypothetical protein 462178 10102468 Alide_0445 Alicycliphilus denitrificans BC hypothetical protein YP_004125106.1 461645 R 596153 CDS YP_004125107.1 319761170 10102469 complement(462192..463079) 1 NC_014910.1 PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein; hypothetical protein 463079 10102469 Alide_0446 Alicycliphilus denitrificans BC hypothetical protein YP_004125107.1 462192 R 596153 CDS YP_004125108.1 319761171 10102470 complement(463083..463688) 1 NC_014910.1 PFAM: LemA family protein; KEGG: aav:Aave_0381 LemA family protein; lema family protein 463688 10102470 Alide_0447 Alicycliphilus denitrificans BC lema family protein YP_004125108.1 463083 R 596153 CDS YP_004125109.1 319761172 10102471 463809..464276 1 NC_014910.1 KEGG: dia:Dtpsy_0312 hypothetical protein; hypothetical protein 464276 10102471 Alide_0448 Alicycliphilus denitrificans BC hypothetical protein YP_004125109.1 463809 D 596153 CDS YP_004125110.1 319761173 10102472 464322..464858 1 NC_014910.1 KEGG: ajs:Ajs_0319 hypothetical protein; hypothetical protein 464858 10102472 Alide_0449 Alicycliphilus denitrificans BC hypothetical protein YP_004125110.1 464322 D 596153 CDS YP_004125111.1 319761174 10102473 complement(465014..465850) 1 NC_014910.1 PFAM: cytochrome c class I; KEGG: aav:Aave_0385 cytochrome c, class I; cytochrome c class i 465850 10102473 Alide_0450 Alicycliphilus denitrificans BC cytochrome c class i YP_004125111.1 465014 R 596153 CDS YP_004125112.1 319761175 10102474 complement(465980..467425) 1 NC_014910.1 KEGG: dia:Dtpsy_0316 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family 467425 10102474 Alide_0451 Alicycliphilus denitrificans BC rnd efflux system, outer membrane lipoprotein, nodt family YP_004125112.1 465980 R 596153 CDS YP_004125113.1 319761176 10102475 complement(467450..470605) 1 NC_014910.1 KEGG: dia:Dtpsy_0317 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 family transporter 470605 10102475 Alide_0452 Alicycliphilus denitrificans BC hydrophobe/amphiphile efflux-1 family transporter YP_004125113.1 467450 R 596153 CDS YP_004125114.1 319761177 10102476 complement(470624..471904) 1 NC_014910.1 KEGG: dia:Dtpsy_0318 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 471904 10102476 Alide_0453 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004125114.1 470624 R 596153 CDS YP_004125115.1 319761178 10102477 472096..472716 1 NC_014910.1 PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain-containing protein; KEGG: dia:Dtpsy_0319 transcriptional regulator, TetR family; regulatory protein tetr 472716 10102477 Alide_0454 Alicycliphilus denitrificans BC regulatory protein tetr YP_004125115.1 472096 D 596153 CDS YP_004125116.1 319761179 10102482 473372..474562 1 NC_014910.1 KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; translation elongation factor tu 474562 10102482 Alide_0455 Alicycliphilus denitrificans BC translation elongation factor tu YP_004125116.1 473372 D 596153 CDS YP_004125117.1 319761180 10102484 474739..475122 1 NC_014910.1 KEGG: ajs:Ajs_3903 preprotein translocase subunit SecE; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; preprotein translocase subunit SecE 475122 10102484 Alide_0456 Alicycliphilus denitrificans BC preprotein translocase subunit SecE YP_004125117.1 474739 D 596153 CDS YP_004125118.1 319761181 10102485 475122..475712 1 NC_014910.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: dia:Dtpsy_3251 NusG antitermination factor; SMART: NGN domain-containing protein; KOW domain protein; transcription termination/antitermination factor nusg 475712 10102485 Alide_0457 Alicycliphilus denitrificans BC transcription termination/antitermination factor nusg YP_004125118.1 475122 D 596153 CDS YP_004125119.1 319761182 10102486 475844..476275 1 NC_014910.1 TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: aav:Aave_4535 50S ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 476275 10102486 Alide_0458 Alicycliphilus denitrificans BC 50S ribosomal protein L11 YP_004125119.1 475844 D 596153 CDS YP_004125120.1 319761183 10102487 476276..476971 1 NC_014910.1 KEGG: dia:Dtpsy_3249 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; 50S ribosomal protein L1 476971 10102487 Alide_0459 Alicycliphilus denitrificans BC 50S ribosomal protein L1 YP_004125120.1 476276 D 596153 CDS YP_004125121.1 319761184 10102488 477204..477710 1 NC_014910.1 PFAM: ribosomal protein L10; KEGG: aav:Aave_4533 50S ribosomal protein L10; 50S ribosomal protein L10 477710 10102488 Alide_0460 Alicycliphilus denitrificans BC 50S ribosomal protein L10 YP_004125121.1 477204 D 596153 CDS YP_004125122.1 319761185 10102489 477765..478145 1 NC_014910.1 KEGG: dia:Dtpsy_3247 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 ; ribosomal protein 60S; 50S ribosomal protein L7/l12 478145 10102489 Alide_0461 Alicycliphilus denitrificans BC 50S ribosomal protein L7/l12 YP_004125122.1 477765 D 596153 CDS YP_004125123.1 319761186 10102490 478420..482544 1 NC_014910.1 KEGG: aav:Aave_4531 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; DNA-directed RNA polymerase subunit beta 482544 10102490 Alide_0462 Alicycliphilus denitrificans BC DNA-directed RNA polymerase subunit beta YP_004125123.1 478420 D 596153 CDS YP_004125124.1 319761187 10102491 482565..486794 1 NC_014910.1 TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: dia:Dtpsy_3245 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 486794 10102491 Alide_0463 Alicycliphilus denitrificans BC DNA-directed RNA polymerase subunit beta' YP_004125124.1 482565 D 596153 CDS YP_004125125.1 319761188 10102492 486914..487480 1 NC_014910.1 KEGG: dia:Dtpsy_3244 hypothetical protein; hypothetical protein 487480 10102492 Alide_0464 Alicycliphilus denitrificans BC hypothetical protein YP_004125125.1 486914 D 596153 CDS YP_004125126.1 319761189 10102493 487477..488844 1 NC_014910.1 KEGG: dia:Dtpsy_3243 sun protein; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; sun protein 488844 10102493 Alide_0465 Alicycliphilus denitrificans BC sun protein YP_004125126.1 487477 D 596153 CDS YP_004125127.1 319761190 10102494 488888..489469 1 NC_014910.1 KEGG: ajs:Ajs_3893 hypothetical protein; hypothetical protein 489469 10102494 Alide_0466 Alicycliphilus denitrificans BC hypothetical protein YP_004125127.1 488888 D 596153 CDS YP_004125128.1 319761191 10102495 489466..491754 1 NC_014910.1 KEGG: ajs:Ajs_3892 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; ATP-binding domain-containing protein 491754 10102495 Alide_0467 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004125128.1 489466 D 596153 CDS YP_004125129.1 319761192 10102496 491794..492489 1 NC_014910.1 KEGG: dia:Dtpsy_3240 two component transcriptional regulator, fis family; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; response regulator receiver 492489 10102496 Alide_0468 Alicycliphilus denitrificans BC response regulator receiver YP_004125129.1 491794 D 596153 CDS YP_004125130.1 319761193 10102498 complement(492890..493840) 1 NC_014910.1 KEGG: dia:Dtpsy_3238 hypothetical protein; hypothetical protein 493840 10102498 Alide_0469 Alicycliphilus denitrificans BC hypothetical protein YP_004125130.1 492890 R 596153 CDS YP_004125131.1 319761194 10102499 complement(493844..495079) 1 NC_014910.1 KEGG: dia:Dtpsy_3237 hypothetical protein; hypothetical protein 495079 10102499 Alide_0470 Alicycliphilus denitrificans BC hypothetical protein YP_004125131.1 493844 R 596153 CDS YP_004125132.1 319761195 10102500 495325..495654 1 NC_014910.1 KEGG: dia:Dtpsy_3236 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 495654 10102500 Alide_0471 Alicycliphilus denitrificans BC helix-turn-helix domain-containing protein YP_004125132.1 495325 D 596153 CDS YP_004125133.1 319761196 10102501 495668..496597 1 NC_014910.1 PFAM: protein of unknown function DUF955; KEGG: dia:Dtpsy_3235 protein of unknown function DUF955; hypothetical protein 496597 10102501 Alide_0472 Alicycliphilus denitrificans BC hypothetical protein YP_004125133.1 495668 D 596153 CDS YP_004125134.1 319761197 10102502 496744..498270 1 NC_014910.1 PFAM: Integrase catalytic region; regulatory protein MerR; KEGG: ctt:CtCNB1_2459 IstA; integrase catalytic region protein 498270 10102502 Alide_0473 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004125134.1 496744 D 596153 CDS YP_004125135.1 319761198 10102503 498260..499063 1 NC_014910.1 KEGG: ctt:CtCNB1_3734 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; istb domain-containing protein ATP-binding protein 499063 10102503 Alide_0474 Alicycliphilus denitrificans BC istb domain-containing protein ATP-binding protein YP_004125135.1 498260 D 596153 CDS YP_004125136.1 319761199 10102504 499095..499874 1 NC_014910.1 KEGG: bbr:BB2493 phage-related DNA-binding protein; manually curated; PFAM: protein of unknown function DUF955; hypothetical protein 499874 10102504 Alide_0475 Alicycliphilus denitrificans BC hypothetical protein YP_004125136.1 499095 D 596153 CDS YP_004125137.1 319761200 10102505 499891..500139 1 NC_014910.1 KEGG: ppg:PputGB1_4812 hypothetical protein; hypothetical protein 500139 10102505 Alide_0476 Alicycliphilus denitrificans BC hypothetical protein YP_004125137.1 499891 D 596153 CDS YP_004125138.1 319761201 10102506 500160..500621 1 NC_014910.1 KEGG: sbn:Sbal195_1558 hypothetical protein; hypothetical protein 500621 10102506 Alide_0477 Alicycliphilus denitrificans BC hypothetical protein YP_004125138.1 500160 D 596153 CDS YP_004125139.1 319761202 10102507 500766..502439 1 NC_014910.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bpy:Bphyt_3723 CMP/dCMP deaminase zinc-binding; cmp/dcmp deaminase zinc-binding protein 502439 10102507 Alide_0478 Alicycliphilus denitrificans BC cmp/dcmp deaminase zinc-binding protein YP_004125139.1 500766 D 596153 CDS YP_004125140.1 319761203 10102510 complement(503904..505244) 1 NC_014910.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: dia:Dtpsy_0400 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 505244 10102510 Alide_0481 Alicycliphilus denitrificans BC nucleotide sugar dehydrogenase YP_004125140.1 503904 R 596153 CDS YP_004125141.1 319761204 10102511 complement(505241..506251) 1 NC_014910.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dia:Dtpsy_0401 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 506251 10102511 Alide_0482 Alicycliphilus denitrificans BC NAD-dependent epimerase/dehydratase YP_004125141.1 505241 R 596153 CDS YP_004125142.1 319761205 10102512 complement(506248..507765) 1 NC_014910.1 KEGG: dia:Dtpsy_0402 glycosyltransferase; glycosyltransferase 507765 10102512 Alide_0483 Alicycliphilus denitrificans BC glycosyltransferase YP_004125142.1 506248 R 596153 CDS YP_004125143.1 319761206 10102513 507869..508900 1 NC_014910.1 PFAM: glycosyl transferase family 2; KEGG: ajs:Ajs_0411 glycosyl transferase family protein; family 2 glycosyl transferase 508900 10102513 Alide_0484 Alicycliphilus denitrificans BC family 2 glycosyl transferase YP_004125143.1 507869 D 596153 CDS YP_004125144.1 319761207 10102514 508897..509826 1 NC_014910.1 KEGG: ajs:Ajs_0412 hypothetical protein; hypothetical protein 509826 10102514 Alide_0485 Alicycliphilus denitrificans BC hypothetical protein YP_004125144.1 508897 D 596153 CDS YP_004125145.1 319761208 10102515 complement(510032..510946) 1 NC_014910.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dia:Dtpsy_0405 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase 510946 10102515 Alide_0486 Alicycliphilus denitrificans BC uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase YP_004125145.1 510032 R 596153 CDS YP_004125146.1 319761209 10102516 510970..511368 1 NC_014910.1 PFAM: Uncharacterised protein family UPF0102; KEGG: ajs:Ajs_0414 hypothetical protein; hypothetical protein 511368 10102516 Alide_0487 Alicycliphilus denitrificans BC hypothetical protein YP_004125146.1 510970 D 596153 CDS YP_004125147.1 319761210 10102517 511429..512031 1 NC_014910.1 KEGG: dia:Dtpsy_0407 phosphoheptose isomerase; phosphoheptose isomerase 512031 10102517 Alide_0488 Alicycliphilus denitrificans BC phosphoheptose isomerase YP_004125147.1 511429 D 596153 CDS YP_004125148.1 319761211 10102518 512028..512693 1 NC_014910.1 KEGG: ajs:Ajs_0416 transport-associated; PFAM: transport-associated; SMART: Transport-associated and nodulation region; transport-associated protein 512693 10102518 Alide_0489 Alicycliphilus denitrificans BC transport-associated protein YP_004125148.1 512028 D 596153 CDS YP_004125149.1 319761212 10102519 complement(512722..513654) 1 NC_014910.1 KEGG: dia:Dtpsy_0409 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 513654 10102519 Alide_0490 Alicycliphilus denitrificans BC 2-hydroxy-3-oxopropionate reductase YP_004125149.1 512722 R 596153 CDS YP_004125150.1 319761213 10102520 complement(513735..514871) 1 NC_014910.1 KEGG: ajs:Ajs_0418 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; twitching motility protein 514871 10102520 Alide_0491 Alicycliphilus denitrificans BC twitching motility protein YP_004125150.1 513735 R 596153 CDS YP_004125151.1 319761214 10102521 complement(514897..515526) 1 NC_014910.1 KEGG: dia:Dtpsy_0411 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; cyclic nucleotide-binding protein 515526 10102521 Alide_0492 Alicycliphilus denitrificans BC cyclic nucleotide-binding protein YP_004125151.1 514897 R 596153 CDS YP_004125152.1 319761215 10102522 complement(515591..516634) 1 NC_014910.1 KEGG: aav:Aave_0637 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; twitching motility protein 516634 10102522 Alide_0493 Alicycliphilus denitrificans BC twitching motility protein YP_004125152.1 515591 R 596153 CDS YP_004125153.1 319761216 10102523 516674..517396 1 NC_014910.1 PFAM: alanine racemase domain protein; KEGG: dac:Daci_1069 alanine racemase domain-containing protein; alanine racemase 517396 10102523 Alide_0494 Alicycliphilus denitrificans BC alanine racemase YP_004125153.1 516674 D 596153 CDS YP_004125154.1 319761217 10102524 517437..518567 1 NC_014910.1 PFAM: aminotransferase class V; KEGG: dia:Dtpsy_0414 aminotransferase class V; class V aminotransferase 518567 10102524 Alide_0495 Alicycliphilus denitrificans BC class V aminotransferase YP_004125154.1 517437 D 596153 CDS YP_004125155.1 319761218 10102525 complement(518628..519050) 1 NC_014910.1 manually curated; KEGG: aav:Aave_0642 hypothetical protein; hypothetical protein 519050 10102525 Alide_0496 Alicycliphilus denitrificans BC hypothetical protein YP_004125155.1 518628 R 596153 CDS YP_004125156.1 319761219 10102526 519235..520536 1 NC_014910.1 PFAM: protein of unknown function DUF445; KEGG: ajs:Ajs_0423 hypothetical protein; hypothetical protein 520536 10102526 Alide_0497 Alicycliphilus denitrificans BC hypothetical protein YP_004125156.1 519235 D 596153 CDS YP_004125157.1 319761220 10102527 complement(520594..522087) 1 NC_014910.1 PFAM: FAD linked oxidase domain protein; KEGG: dia:Dtpsy_0417 FAD linked oxidase domain protein; fad linked oxidase domain-containing protein 522087 10102527 Alide_0498 Alicycliphilus denitrificans BC fad linked oxidase domain-containing protein YP_004125157.1 520594 R 596153 CDS YP_004125158.1 319761221 10102528 complement(522154..523050) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0418 transcriptional regulator, LysR family; LysR family transcriptional regulator 523050 10102528 Alide_0499 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125158.1 522154 R 596153 CDS YP_004125159.1 319761222 10102529 complement(523050..523898) 1 NC_014910.1 KEGG: dia:Dtpsy_0419 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; formyltetrahydrofolate deformylase 523898 10102529 Alide_0500 Alicycliphilus denitrificans BC formyltetrahydrofolate deformylase YP_004125159.1 523050 R 596153 CDS YP_004125160.1 319761223 10102530 523944..526610 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: ctt:CtCNB1_4372 diguanylate cyclase/phosphodiesterase with; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase 526610 10102530 Alide_0501 Alicycliphilus denitrificans BC diguanylate cyclase YP_004125160.1 523944 D 596153 CDS YP_004125161.1 319761224 10102531 complement(526611..527471) 1 NC_014910.1 PFAM: protein of unknown function DUF399; KEGG: ajs:Ajs_0430 hypothetical protein; hypothetical protein 527471 10102531 Alide_0502 Alicycliphilus denitrificans BC hypothetical protein YP_004125161.1 526611 R 596153 CDS YP_004125162.1 319761225 10102532 527738..530173 1 NC_014910.1 KEGG: ajs:Ajs_0431 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase 530173 10102532 Alide_0503 Alicycliphilus denitrificans BC ribonucleoside-diphosphate reductase YP_004125162.1 527738 D 596153 CDS YP_004125163.1 319761226 10102533 530352..532268 1 NC_014910.1 KEGG: dia:Dtpsy_0423 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; ATP-binding domain-containing protein 532268 10102533 Alide_0504 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004125163.1 530352 D 596153 CDS YP_004125164.1 319761227 10102534 532265..532939 1 NC_014910.1 KEGG: dia:Dtpsy_0424 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; response regulator receiver 532939 10102534 Alide_0505 Alicycliphilus denitrificans BC response regulator receiver YP_004125164.1 532265 D 596153 CDS YP_004125165.1 319761228 10102535 533168..534463 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0434 major facilitator superfamily transporter; major facilitator superfamily protein 534463 10102535 Alide_0506 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004125165.1 533168 D 596153 CDS YP_004125166.1 319761229 10102536 534482..535927 1 NC_014910.1 KEGG: dia:Dtpsy_0426 nitrite transporter; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; nitrite transporter 535927 10102536 Alide_0507 Alicycliphilus denitrificans BC nitrite transporter YP_004125166.1 534482 D 596153 CDS YP_004125167.1 319761230 10102537 535964..539758 1 NC_014910.1 KEGG: ajs:Ajs_0436 respiratory nitrate reductase alpha subunit apoprotein; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 539758 10102537 Alide_0508 Alicycliphilus denitrificans BC nitrate reductase subunit alpha YP_004125167.1 535964 D 596153 CDS YP_004125168.1 319761231 10102538 539777..541300 1 NC_014910.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: dia:Dtpsy_0428 nitrate reductase, beta subunit; nitrate reductase subunit beta 541300 10102538 Alide_0509 Alicycliphilus denitrificans BC nitrate reductase subunit beta YP_004125168.1 539777 D 596153 CDS YP_004125169.1 319761232 10102539 541312..542013 1 NC_014910.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; KEGG: dia:Dtpsy_0429 nitrate reductase molybdenum cofactor assembly chaperone; PFAM: TorD-like chaperone; nitrate reductase molybdenum cofactor assembly chaperone 542013 10102539 Alide_0510 Alicycliphilus denitrificans BC nitrate reductase molybdenum cofactor assembly chaperone YP_004125169.1 541312 D 596153 CDS YP_004125170.1 319761233 10102540 542010..542738 1 NC_014910.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; KEGG: dia:Dtpsy_0430 respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 542738 10102540 Alide_0511 Alicycliphilus denitrificans BC respiratory nitrate reductase subunit gamma YP_004125170.1 542010 D 596153 CDS YP_004125171.1 319761234 10102541 542866..543693 1 NC_014910.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dia:Dtpsy_0431 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 543693 10102541 Alide_0512 Alicycliphilus denitrificans BC PpiC-type peptidyl-prolyl cis-trans isomerase YP_004125171.1 542866 D 596153 CDS YP_004125172.1 319761235 10102542 543728..544405 1 NC_014910.1 KEGG: dia:Dtpsy_0432 carbonate dehydratase; PFAM: carbonic anhydrase; carbonate dehydratase 544405 10102542 Alide_0513 Alicycliphilus denitrificans BC carbonate dehydratase YP_004125172.1 543728 D 596153 CDS YP_004125173.1 319761236 10102543 544405..545055 1 NC_014910.1 PFAM: nitroreductase; KEGG: dia:Dtpsy_0434 nitroreductase; nitroreductase 545055 10102543 Alide_0514 Alicycliphilus denitrificans BC nitroreductase YP_004125173.1 544405 D 596153 CDS YP_004125174.1 319761237 10102544 545052..545471 1 NC_014910.1 KEGG: dia:Dtpsy_0435 hypothetical protein; hypothetical protein 545471 10102544 Alide_0515 Alicycliphilus denitrificans BC hypothetical protein YP_004125174.1 545052 D 596153 CDS YP_004125175.1 319761238 10102545 545525..546073 1 NC_014910.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dia:Dtpsy_0436 hemerythrin HHE cation binding domain protein; hemerythrin hhe cation binding domain-containing protein 546073 10102545 Alide_0516 Alicycliphilus denitrificans BC hemerythrin hhe cation binding domain-containing protein YP_004125175.1 545525 D 596153 CDS YP_004125176.1 319761239 10102546 complement(546263..546550) 1 NC_014910.1 KEGG: ajs:Ajs_0446 hypothetical protein; hypothetical protein 546550 10102546 Alide_0517 Alicycliphilus denitrificans BC hypothetical protein YP_004125176.1 546263 R 596153 CDS YP_004125177.1 319761240 10102547 complement(546684..547835) 1 NC_014910.1 KEGG: dia:Dtpsy_0438 hypothetical protein; hypothetical protein 547835 10102547 Alide_0518 Alicycliphilus denitrificans BC hypothetical protein YP_004125177.1 546684 R 596153 CDS YP_004125178.1 319761241 10102548 548017..549006 1 NC_014910.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ajs:Ajs_0449 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (faa) hydrolase 549006 10102548 Alide_0519 Alicycliphilus denitrificans BC fumarylacetoacetate (faa) hydrolase YP_004125178.1 548017 D 596153 CDS YP_004125179.1 319761242 10102549 549163..551367 1 NC_014910.1 KEGG: cph:Cpha266_1840 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; tetratricopeptide tpr_1 repeat-containing protein 551367 10102549 Alide_0520 Alicycliphilus denitrificans BC tetratricopeptide tpr_1 repeat-containing protein YP_004125179.1 549163 D 596153 CDS YP_004125180.1 319761243 10102550 complement(551428..553503) 1 NC_014910.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: ajs:Ajs_0451 molybdopterin oxidoreductase; molybdopterin dinucleotide-binding region protein 553503 10102550 Alide_0521 Alicycliphilus denitrificans BC molybdopterin dinucleotide-binding region protein YP_004125180.1 551428 R 596153 CDS YP_004125181.1 319761244 10102551 complement(553624..554655) 1 NC_014910.1 KEGG: vei:Veis_1579 hypothetical protein; hypothetical protein 554655 10102551 Alide_0522 Alicycliphilus denitrificans BC hypothetical protein YP_004125181.1 553624 R 596153 CDS YP_004125182.1 319761245 10102552 complement(554696..555604) 1 NC_014910.1 KEGG: cti:RALTA_B1739 citrate lyase/aldolase; PFAM: HpcH/HpaI aldolase; citryl-CoA lyase 555604 10102552 Alide_0523 Alicycliphilus denitrificans BC citryl-CoA lyase YP_004125182.1 554696 R 596153 CDS YP_004125183.1 319761246 10102553 complement(555620..556852) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_1581 formyl-CoA transferase; l-carnitine dehydratase/bile acid-inducible protein f 556852 10102553 Alide_0524 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004125183.1 555620 R 596153 CDS YP_004125184.1 319761247 10102554 complement(556849..557352) 1 NC_014910.1 KEGG: cti:RALTA_B1741 hypothetical protein; hypothetical protein 557352 10102554 Alide_0525 Alicycliphilus denitrificans BC hypothetical protein YP_004125184.1 556849 R 596153 CDS YP_004125185.1 319761248 10102555 complement(557349..558599) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: cti:RALTA_B1742 acyl CoA dehydrogenase oxidoreductase protein; acyl-CoA dehydrogenase 558599 10102555 Alide_0526 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004125185.1 557349 R 596153 CDS YP_004125186.1 319761249 10102556 complement(558604..559107) 1 NC_014910.1 PFAM: MaoC domain protein dehydratase; KEGG: cti:RALTA_B1743 hypothetical protein; MaoC domain-containing protein 559107 10102556 Alide_0527 Alicycliphilus denitrificans BC MaoC domain-containing protein YP_004125186.1 558604 R 596153 CDS YP_004125187.1 319761250 10102557 complement(559104..560483) 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_1585 MmgE/PrpD family protein; mmge/prpd family protein 560483 10102557 Alide_0528 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004125187.1 559104 R 596153 CDS YP_004125188.1 319761251 10102558 560689..561564 1 NC_014910.1 KEGG: xau:Xaut_1974 citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; citryl-CoA lyase 561564 10102558 Alide_0529 Alicycliphilus denitrificans BC citryl-CoA lyase YP_004125188.1 560689 D 596153 CDS YP_004125189.1 319761252 10102559 561571..562329 1 NC_014910.1 PFAM: regulatory protein IclR; KEGG: rcu:RCOM_0002820 Transcriptional regulator kdgR, putative; regulatory protein iclr 562329 10102559 Alide_0530 Alicycliphilus denitrificans BC regulatory protein iclr YP_004125189.1 561571 D 596153 CDS YP_004125190.1 319761253 10102560 562431..563636 1 NC_014910.1 TIGRFAM: amidohydrolase; KEGG: dia:Dtpsy_0444 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 563636 10102560 Alide_0531 Alicycliphilus denitrificans BC amidohydrolase YP_004125190.1 562431 D 596153 CDS YP_004125191.1 319761254 10102561 563705..563962 1 NC_014910.1 PFAM: acyl-coA-binding protein ACBP; KEGG: dia:Dtpsy_0446 acyl-coA-binding protein ACBP; acyl-CoA-binding protein 563962 10102561 Alide_0532 Alicycliphilus denitrificans BC acyl-CoA-binding protein YP_004125191.1 563705 D 596153 CDS YP_004125192.1 319761255 10102562 complement(563965..565068) 1 NC_014910.1 PFAM: aminopeptidase; KEGG: dia:Dtpsy_0447 zinc protease protein; aminopeptidase 565068 10102562 Alide_0533 Alicycliphilus denitrificans BC aminopeptidase YP_004125192.1 563965 R 596153 CDS YP_004125193.1 319761256 10102563 565075..565734 1 NC_014910.1 KEGG: ajs:Ajs_0457 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase i 565734 10102563 Alide_0534 Alicycliphilus denitrificans BC DNA-3-methyladenine glycosylase i YP_004125193.1 565075 D 596153 CDS YP_004125194.1 319761257 10102564 complement(565868..566029) 1 NC_014910.1 KEGG: dia:Dtpsy_0450 hypothetical protein; hypothetical protein 566029 10102564 Alide_0535 Alicycliphilus denitrificans BC hypothetical protein YP_004125194.1 565868 R 596153 CDS YP_004125195.1 319761258 10102565 566310..567608 1 NC_014910.1 KEGG: ajs:Ajs_0460 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 567608 10102565 Alide_0536 Alicycliphilus denitrificans BC cyclopropane-fatty-acyl-phospholipid synthase YP_004125195.1 566310 D 596153 CDS YP_004125196.1 319761259 10102566 567630..567950 1 NC_014910.1 PFAM: Domain of unknown function DUF1840; KEGG: dia:Dtpsy_0452 hypothetical protein; hypothetical protein 567950 10102566 Alide_0537 Alicycliphilus denitrificans BC hypothetical protein YP_004125196.1 567630 D 596153 CDS YP_004125197.1 319761260 10102567 complement(567973..568989) 1 NC_014910.1 KEGG: ajs:Ajs_0462 hypothetical protein; hypothetical protein 568989 10102567 Alide_0538 Alicycliphilus denitrificans BC hypothetical protein YP_004125197.1 567973 R 596153 CDS YP_004125198.1 319761261 10102568 complement(569132..570121) 1 NC_014910.1 KEGG: vap:Vapar_5015 hypothetical protein; hypothetical protein 570121 10102568 Alide_0539 Alicycliphilus denitrificans BC hypothetical protein YP_004125198.1 569132 R 596153 CDS YP_004125199.1 319761262 10102569 complement(570248..571495) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_0455 phenylacetate-CoA ligase; AMP-dependent synthetase/ligase 571495 10102569 Alide_0540 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004125199.1 570248 R 596153 CDS YP_004125200.1 319761263 10102570 complement(571586..572428) 1 NC_014910.1 KEGG: ctt:CtCNB1_4329 high-affinity branched-chain amino acid transport ATP-binding protein LivF; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 572428 10102570 Alide_0541 Alicycliphilus denitrificans BC ABC transporter YP_004125200.1 571586 R 596153 CDS YP_004125201.1 319761264 10102571 complement(572568..573881) 1 NC_014910.1 KEGG: dac:Daci_1155 hypothetical protein; hypothetical protein 573881 10102571 Alide_0542 Alicycliphilus denitrificans BC hypothetical protein YP_004125201.1 572568 R 596153 CDS YP_004125202.1 319761265 10102572 complement(573940..575004) 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: ctt:CtCNB1_4327 membrane protein; inner-membrane translocator 575004 10102572 Alide_0543 Alicycliphilus denitrificans BC inner-membrane translocator YP_004125202.1 573940 R 596153 CDS YP_004125203.1 319761266 10102573 complement(575026..575955) 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: ctt:CtCNB1_4326 high-affinity branched-chain amino acidtransport system permease protein LivH; inner-membrane translocator 575955 10102573 Alide_0544 Alicycliphilus denitrificans BC inner-membrane translocator YP_004125203.1 575026 R 596153 CDS YP_004125204.1 319761267 10102574 complement(575976..576761) 1 NC_014910.1 KEGG: dac:Daci_1158 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 576761 10102574 Alide_0545 Alicycliphilus denitrificans BC ABC transporter YP_004125204.1 575976 R 596153 CDS YP_004125205.1 319761268 10102575 complement(576780..578711) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 578711 10102575 Alide_0546 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004125205.1 576780 R 596153 CDS YP_004125206.1 319761269 10102576 578932..580623 1 NC_014910.1 KEGG: dia:Dtpsy_0462 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; peptidoglycan-binding domain-containing protein 580623 10102576 Alide_0547 Alicycliphilus denitrificans BC peptidoglycan-binding domain-containing protein YP_004125206.1 578932 D 596153 CDS YP_004125207.1 319761270 10102577 580628..581332 1 NC_014910.1 KEGG: ajs:Ajs_0472 hypothetical protein; hypothetical protein 581332 10102577 Alide_0548 Alicycliphilus denitrificans BC hypothetical protein YP_004125207.1 580628 D 596153 CDS YP_004125208.1 319761271 10102578 581462..582253 1 NC_014910.1 KEGG: ajs:Ajs_0473 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein 582253 10102578 Alide_0549 Alicycliphilus denitrificans BC cyclic nucleotide-binding protein YP_004125208.1 581462 D 596153 CDS YP_004125209.1 319761272 10102579 582292..583212 1 NC_014910.1 KEGG: ajs:Ajs_0474 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; RNA-binding s4 domain-containing protein 583212 10102579 Alide_0550 Alicycliphilus denitrificans BC RNA-binding s4 domain-containing protein YP_004125209.1 582292 D 596153 CDS YP_004125210.1 319761273 10102580 583310..585271 1 NC_014910.1 KEGG: dia:Dtpsy_0466 heat shock protein 90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; heat shock protein hsp90-like protein 585271 10102580 Alide_0551 Alicycliphilus denitrificans BC heat shock protein hsp90-like protein YP_004125210.1 583310 D 596153 CDS YP_004125211.1 319761274 10102581 585304..585789 1 NC_014910.1 KEGG: dac:Daci_1191 hypothetical protein; hypothetical protein 585789 10102581 Alide_0552 Alicycliphilus denitrificans BC hypothetical protein YP_004125211.1 585304 D 596153 CDS YP_004125212.1 319761275 10102582 585882..586862 1 NC_014910.1 KEGG: dia:Dtpsy_0467 hypothetical protein; hypothetical protein 586862 10102582 Alide_0553 Alicycliphilus denitrificans BC hypothetical protein YP_004125212.1 585882 D 596153 CDS YP_004125213.1 319761276 10102583 complement(586863..587906) 1 NC_014910.1 PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0479 serine/threonine protein kinase; aminoglycoside phosphotransferase 587906 10102583 Alide_0554 Alicycliphilus denitrificans BC aminoglycoside phosphotransferase YP_004125213.1 586863 R 596153 CDS YP_004125214.1 319761277 10102584 complement(587929..589377) 1 NC_014910.1 KEGG: dia:Dtpsy_0471 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; UspA domain-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; serine/threonine-protein kinase-like domain-containing protein 589377 10102584 Alide_0555 Alicycliphilus denitrificans BC serine/threonine-protein kinase-like domain-containing protein YP_004125214.1 587929 R 596153 CDS YP_004125215.1 319761278 10102585 complement(589381..590139) 1 NC_014910.1 PFAM: metallophosphoesterase; KEGG: dia:Dtpsy_0472 metallophosphoesterase; metallophosphoesterase 590139 10102585 Alide_0556 Alicycliphilus denitrificans BC metallophosphoesterase YP_004125215.1 589381 R 596153 CDS YP_004125216.1 319761279 10102586 590369..591565 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0058 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 591565 10102586 Alide_0557 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004125216.1 590369 D 596153 CDS YP_004125217.1 319761280 10102587 591581..592060 1 NC_014910.1 KEGG: ctt:CtCNB1_2196 hypothetical protein; hypothetical protein 592060 10102587 Alide_0558 Alicycliphilus denitrificans BC hypothetical protein YP_004125217.1 591581 D 596153 CDS YP_004125218.1 319761281 10102588 592113..593111 1 NC_014910.1 KEGG: ctt:CtCNB1_2197 TctC; ABC transporter substrate-binding protein 593111 10102588 Alide_0559 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125218.1 592113 D 596153 CDS YP_004125219.1 319761282 10102589 complement(593158..594006) 1 NC_014910.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_0476 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 594006 10102589 Alide_0560 Alicycliphilus denitrificans BC 3-hydroxyacyl-CoA dehydrogenase YP_004125219.1 593158 R 596153 CDS YP_004125220.1 319761283 10102590 594106..595698 1 NC_014910.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dia:Dtpsy_0477 choline dehydrogenase; glucose-methanol-choline oxidoreductase 595698 10102590 Alide_0561 Alicycliphilus denitrificans BC glucose-methanol-choline oxidoreductase YP_004125220.1 594106 D 596153 CDS YP_004125221.1 319761284 10102593 complement(596410..597228) 1 NC_014910.1 KEGG: ajs:Ajs_3712 ABC transporter; TIGRFAM: ABC transporter; PFAM: ABC transporter; ABC transporter 597228 10102593 Alide_0564 Alicycliphilus denitrificans BC ABC transporter YP_004125221.1 596410 R 596153 CDS YP_004125222.1 319761285 10102594 complement(597230..598171) 1 NC_014910.1 KEGG: ajs:Ajs_3711 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 598171 10102594 Alide_0565 Alicycliphilus denitrificans BC ABC transporter YP_004125222.1 597230 R 596153 CDS YP_004125223.1 319761286 10102595 complement(598276..599988) 1 NC_014910.1 PFAM: Tannase and feruloyl esterase; KEGG: reu:Reut_A1509 tannase and feruloyl esterase; tannase and feruloyl esterase 599988 10102595 Alide_0566 Alicycliphilus denitrificans BC tannase and feruloyl esterase YP_004125223.1 598276 R 596153 CDS YP_004125224.1 319761287 10102596 complement(600130..601614) 1 NC_014910.1 TIGRFAM: AMP nucleosidase; KEGG: aav:Aave_4246 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase-like; purine or other phosphorylase family 1; amp nucleosidase 601614 10102596 Alide_0567 Alicycliphilus denitrificans BC amp nucleosidase YP_004125224.1 600130 R 596153 CDS YP_004125225.1 319761288 10102597 complement(601650..603746) 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold-3 domain protein; KEGG: dia:Dtpsy_0486 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase 603746 10102597 Alide_0568 Alicycliphilus denitrificans BC diguanylate cyclase YP_004125225.1 601650 R 596153 CDS YP_004125226.1 319761289 10102598 603849..604802 1 NC_014910.1 manually curated; TIGRFAM: cation diffusion facilitator family transporter; KEGG: ajs:Ajs_3707 cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 604802 10102598 Alide_0569 Alicycliphilus denitrificans BC cation diffusion facilitator family transporter YP_004125226.1 603849 D 596153 CDS YP_004125227.1 319761290 10102599 604799..605242 1 NC_014910.1 KEGG: dia:Dtpsy_0488 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; d-tyrosyl-tRNA(tyr) deacylase 605242 10102599 Alide_0570 Alicycliphilus denitrificans BC d-tyrosyl-tRNA(tyr) deacylase YP_004125227.1 604799 D 596153 CDS YP_004125228.1 319761291 10102600 complement(605308..606054) 1 NC_014910.1 PFAM: protein of unknown function DUF81; KEGG: dia:Dtpsy_0490 protein of unknown function DUF81; hypothetical protein 606054 10102600 Alide_0571 Alicycliphilus denitrificans BC hypothetical protein YP_004125228.1 605308 R 596153 CDS YP_004125229.1 319761292 10102601 complement(606220..607167) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_1220 LysR family transcriptional regulator; LysR family transcriptional regulator 607167 10102601 Alide_0572 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125229.1 606220 R 596153 CDS YP_004125230.1 319761293 10102602 607272..608243 1 NC_014910.1 KEGG: dac:Daci_1221 hypothetical protein; hypothetical protein 608243 10102602 Alide_0573 Alicycliphilus denitrificans BC hypothetical protein YP_004125230.1 607272 D 596153 CDS YP_004125231.1 319761294 10102603 608263..609513 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_1222 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 609513 10102603 Alide_0574 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004125231.1 608263 D 596153 CDS YP_004125232.1 319761295 10102604 609546..610532 1 NC_014910.1 KEGG: dac:Daci_1223 quinone oxidoreductase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; quinone oxidoreductase, yhdh/yhfp family 610532 10102604 Alide_0575 Alicycliphilus denitrificans BC quinone oxidoreductase, yhdh/yhfp family YP_004125232.1 609546 D 596153 CDS YP_004125233.1 319761296 10102605 610588..612147 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B1709 acyl-CoA synthetase; AMP-dependent synthetase/ligase 612147 10102605 Alide_0576 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004125233.1 610588 D 596153 CDS YP_004125234.1 319761297 10102606 complement(612164..612616) 1 NC_014910.1 PFAM: protein of unknown function UPF0054; KEGG: ajs:Ajs_3702 hypothetical protein; hypothetical protein 612616 10102606 Alide_0577 Alicycliphilus denitrificans BC hypothetical protein YP_004125234.1 612164 R 596153 CDS YP_004125235.1 319761298 10102607 complement(612668..613618) 1 NC_014910.1 PFAM: PhoH family protein; KEGG: dia:Dtpsy_0492 PhoH family protein; phoh family protein 613618 10102607 Alide_0578 Alicycliphilus denitrificans BC phoh family protein YP_004125235.1 612668 R 596153 CDS YP_004125236.1 319761299 10102608 613666..614238 1 NC_014910.1 TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; KEGG: dia:Dtpsy_0493 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding class 1; holliday junction DNA helicase ruva 614238 10102608 Alide_0579 Alicycliphilus denitrificans BC holliday junction DNA helicase ruva YP_004125236.1 613666 D 596153 CDS YP_004125237.1 319761300 10102609 614275..615756 1 NC_014910.1 KEGG: dia:Dtpsy_0494 endoproteinase Arg-C; endoproteinase arg-c 615756 10102609 Alide_0580 Alicycliphilus denitrificans BC endoproteinase arg-c YP_004125237.1 614275 D 596153 CDS YP_004125238.1 319761301 10102610 complement(615770..618574) 1 NC_014910.1 KEGG: ajs:Ajs_3698 DnaK-related protein; molecular chaperone DnaK 618574 10102610 Alide_0581 Alicycliphilus denitrificans BC molecular chaperone DnaK YP_004125238.1 615770 R 596153 CDS YP_004125239.1 319761302 10102611 complement(618571..620463) 1 NC_014910.1 KEGG: dac:Daci_5720 heat-shock chaperone protein; heat-shock chaperone protein 620463 10102611 Alide_0582 Alicycliphilus denitrificans BC heat-shock chaperone protein YP_004125239.1 618571 R 596153 CDS YP_004125240.1 319761303 10102612 complement(620460..621065) 1 NC_014910.1 KEGG: dac:Daci_5721 hypothetical protein; hypothetical protein 621065 10102612 Alide_0583 Alicycliphilus denitrificans BC hypothetical protein YP_004125240.1 620460 R 596153 CDS YP_004125241.1 319761304 10102613 621177..622250 1 NC_014910.1 SMART: AAA ATPase; manually curated; KEGG: dia:Dtpsy_0499 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; holliday junction DNA helicase ruvb 622250 10102613 Alide_0584 Alicycliphilus denitrificans BC holliday junction DNA helicase ruvb YP_004125241.1 621177 D 596153 CDS YP_004125242.1 319761305 10102614 complement(622260..622982) 1 NC_014910.1 PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter; mgtc/sapb transporter 622982 10102614 Alide_0585 Alicycliphilus denitrificans BC mgtc/sapb transporter YP_004125242.1 622260 R 596153 CDS YP_004125243.1 319761306 10102615 complement(623038..623388) 1 NC_014910.1 KEGG: dia:Dtpsy_3519 hypothetical protein; hypothetical protein 623388 10102615 Alide_0586 Alicycliphilus denitrificans BC hypothetical protein YP_004125243.1 623038 R 596153 CDS YP_004125244.1 319761307 10102616 complement(623496..623690) 1 NC_014910.1 KEGG: ctt:CtCNB1_4283 hypothetical protein; hypothetical protein 623690 10102616 Alide_0587 Alicycliphilus denitrificans BC hypothetical protein YP_004125244.1 623496 R 596153 CDS YP_004125245.1 319761308 10102617 complement(624034..625197) 1 NC_014910.1 PFAM: alanine racemase domain protein; KEGG: dia:Dtpsy_0501 alanine racemase domain protein; alanine racemase 625197 10102617 Alide_0588 Alicycliphilus denitrificans BC alanine racemase YP_004125245.1 624034 R 596153 CDS YP_004125246.1 319761309 10102618 complement(625181..625828) 1 NC_014910.1 PFAM: Phosphoglycerate mutase; KEGG: dia:Dtpsy_0502 phosphoglycerate mutase; phosphoglycerate mutase 625828 10102618 Alide_0589 Alicycliphilus denitrificans BC phosphoglycerate mutase YP_004125246.1 625181 R 596153 CDS YP_004125247.1 319761310 10102619 complement(625836..626450) 1 NC_014910.1 KEGG: dia:Dtpsy_0504 hypothetical protein; hypothetical protein 626450 10102619 Alide_0590 Alicycliphilus denitrificans BC hypothetical protein YP_004125247.1 625836 R 596153 CDS YP_004125248.1 319761311 10102620 complement(626624..627556) 1 NC_014910.1 PFAM: PP-loop domain protein; KEGG: dia:Dtpsy_0505 PP-loop domain protein; pp-loop domain-containing protein 627556 10102620 Alide_0591 Alicycliphilus denitrificans BC pp-loop domain-containing protein YP_004125248.1 626624 R 596153 CDS YP_004125249.1 319761312 10102621 complement(627561..627953) 1 NC_014910.1 PFAM: dihydroneopterin aldolase; KEGG: dia:Dtpsy_0506 dihydroneopterin aldolase; dihydroneopterin aldolase 627953 10102621 Alide_0592 Alicycliphilus denitrificans BC dihydroneopterin aldolase YP_004125249.1 627561 R 596153 CDS YP_004125250.1 319761313 10102622 complement(627958..628371) 1 NC_014910.1 PFAM: dihydroneopterin aldolase; KEGG: dia:Dtpsy_0507 dihydroneopterin aldolase; dihydroneopterin aldolase 628371 10102622 Alide_0593 Alicycliphilus denitrificans BC dihydroneopterin aldolase YP_004125250.1 627958 R 596153 CDS YP_004125251.1 319761314 10102623 complement(628368..629174) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bge:BC1002_2951 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 629174 10102623 Alide_0594 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004125251.1 628368 R 596153 CDS YP_004125252.1 319761315 10102624 629313..630398 1 NC_014910.1 PFAM: protein of unknown function DUF185; KEGG: dia:Dtpsy_0510 protein of unknown function DUF185; hypothetical protein 630398 10102624 Alide_0595 Alicycliphilus denitrificans BC hypothetical protein YP_004125252.1 629313 D 596153 CDS YP_004125253.1 319761316 10102625 630425..630829 1 NC_014910.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4030 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 630829 10102625 Alide_0596 Alicycliphilus denitrificans BC glyoxalase/bleomycin resistance protein/dioxygenase YP_004125253.1 630425 D 596153 CDS YP_004125254.1 319761317 10102626 630833..631027 1 NC_014910.1 KEGG: dia:Dtpsy_0515 hypothetical protein; hypothetical protein 631027 10102626 Alide_0597 Alicycliphilus denitrificans BC hypothetical protein YP_004125254.1 630833 D 596153 CDS YP_004125255.1 319761318 10102627 631170..632129 1 NC_014910.1 PFAM: ROK family protein; KEGG: ajs:Ajs_0500 glucokinase; rok family protein 632129 10102627 Alide_0598 Alicycliphilus denitrificans BC rok family protein YP_004125255.1 631170 D 596153 CDS YP_004125256.1 319761319 10102628 complement(632090..633481) 1 NC_014910.1 TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; KEGG: ajs:Ajs_0501 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase 633481 10102628 Alide_0599 Alicycliphilus denitrificans BC alpha,alpha-trehalose-phosphate synthase YP_004125256.1 632090 R 596153 CDS YP_004125257.1 319761320 10102630 complement(635284..636039) 1 NC_014910.1 KEGG: dia:Dtpsy_0519 trehalose-phosphatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; trehalose-phosphatase 636039 10102630 Alide_0601 Alicycliphilus denitrificans BC trehalose-phosphatase YP_004125257.1 635284 R 596153 CDS YP_004125258.1 319761321 10102631 636182..636628 1 NC_014910.1 KEGG: dia:Dtpsy_0520 thioredoxin; TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain-containing protein; thioredoxin 636628 10102631 Alide_0602 Alicycliphilus denitrificans BC thioredoxin YP_004125258.1 636182 D 596153 CDS YP_004125259.1 319761322 10102632 complement(636617..637864) 1 NC_014910.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: dia:Dtpsy_0521 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; polynucleotide adenylyltransferase 637864 10102632 Alide_0603 Alicycliphilus denitrificans BC polynucleotide adenylyltransferase YP_004125259.1 636617 R 596153 CDS YP_004125260.1 319761323 10102633 637931..638914 1 NC_014910.1 KEGG: vei:Veis_3990 sigma-54 dependent trancsriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 638914 10102633 Alide_0604 Alicycliphilus denitrificans BC sigma-54 factor interaction domain-containing protein YP_004125260.1 637931 D 596153 CDS YP_004125261.1 319761324 10102634 639099..640460 1 NC_014910.1 KEGG: vei:Veis_3993 hypothetical protein; hypothetical protein 640460 10102634 Alide_0605 Alicycliphilus denitrificans BC hypothetical protein YP_004125261.1 639099 D 596153 CDS YP_004125262.1 319761325 10102635 640475..640795 1 NC_014910.1 KEGG: vei:Veis_3992 hypothetical protein; hypothetical protein 640795 10102635 Alide_0606 Alicycliphilus denitrificans BC hypothetical protein YP_004125262.1 640475 D 596153 CDS YP_004125263.1 319761326 10102636 640833..641804 1 NC_014910.1 KEGG: vei:Veis_3991 hypothetical protein; hypothetical protein 641804 10102636 Alide_0607 Alicycliphilus denitrificans BC hypothetical protein YP_004125263.1 640833 D 596153 CDS YP_004125264.1 319761327 10102637 complement(641806..642576) 1 NC_014910.1 PFAM: metallophosphoesterase; KEGG: dia:Dtpsy_0522 metallophosphoesterase; metallophosphoesterase 642576 10102637 Alide_0608 Alicycliphilus denitrificans BC metallophosphoesterase YP_004125264.1 641806 R 596153 CDS YP_004125265.1 319761328 10102638 complement(642595..643281) 1 NC_014910.1 PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_0507 glutathione S-transferase domain-containing protein; glutathione s-transferase domain-containing protein 643281 10102638 Alide_0609 Alicycliphilus denitrificans BC glutathione s-transferase domain-containing protein YP_004125265.1 642595 R 596153 CDS YP_004125266.1 319761329 10102639 complement(643370..643942) 1 NC_014910.1 KEGG: dia:Dtpsy_0524 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 643942 10102639 Alide_0610 Alicycliphilus denitrificans BC 5-formyltetrahydrofolate cyclo-ligase YP_004125266.1 643370 R 596153 CDS YP_004125267.1 319761330 10102640 643957..645939 1 NC_014910.1 PFAM: Lytic transglycosylase catalytic; KEGG: dia:Dtpsy_0525 lytic transglycosylase catalytic; lytic transglycosylase 645939 10102640 Alide_0611 Alicycliphilus denitrificans BC lytic transglycosylase YP_004125267.1 643957 D 596153 CDS YP_004125268.1 319761331 10102641 complement(646002..646529) 1 NC_014910.1 KEGG: ajs:Ajs_0510 cytochrome b561; cytochrome b561 646529 10102641 Alide_0612 Alicycliphilus denitrificans BC cytochrome b561 YP_004125268.1 646002 R 596153 CDS YP_004125269.1 319761332 10102642 complement(646529..646801) 1 NC_014910.1 KEGG: dia:Dtpsy_0527 signal peptide protein; hypothetical protein 646801 10102642 Alide_0613 Alicycliphilus denitrificans BC hypothetical protein YP_004125269.1 646529 R 596153 CDS YP_004125270.1 319761333 10102643 complement(646938..647621) 1 NC_014910.1 KEGG: ajs:Ajs_0512 hydroxylase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; 2OG-Fe(II) oxygenase 647621 10102643 Alide_0614 Alicycliphilus denitrificans BC 2OG-Fe(II) oxygenase YP_004125270.1 646938 R 596153 CDS YP_004125271.1 319761334 10102644 complement(647615..648712) 1 NC_014910.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ajs:Ajs_0513 (S)-2-hydroxy-acid oxidase; fmn-dependent alpha-hydroxy acid dehydrogenase 648712 10102644 Alide_0615 Alicycliphilus denitrificans BC fmn-dependent alpha-hydroxy acid dehydrogenase YP_004125271.1 647615 R 596153 CDS YP_004125272.1 319761335 10102645 complement(648766..651054) 1 NC_014910.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_0514 TonB-dependent receptor; tonb-dependent receptor 651054 10102645 Alide_0616 Alicycliphilus denitrificans BC tonb-dependent receptor YP_004125272.1 648766 R 596153 CDS YP_004125273.1 319761336 10102646 complement(651209..652135) 1 NC_014910.1 KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein 652135 10102646 Alide_0617 Alicycliphilus denitrificans BC beta-lactamase domain-containing protein YP_004125273.1 651209 R 596153 CDS YP_004125274.1 319761337 10102647 complement(652154..653839) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 653839 10102647 Alide_0618 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004125274.1 652154 R 596153 CDS YP_004125275.1 319761338 10102648 653962..654864 1 NC_014910.1 KEGG: dia:Dtpsy_0533 PGAP1 family protein; pgap1 family protein 654864 10102648 Alide_0619 Alicycliphilus denitrificans BC pgap1 family protein YP_004125275.1 653962 D 596153 CDS YP_004125276.1 319761339 10102649 complement(654967..656184) 1 NC_014910.1 PFAM: Beta-ketoacyl synthase; KEGG: dia:Dtpsy_0542 beta-ketoacyl synthase; beta-ketoacyl synthase 656184 10102649 Alide_0620 Alicycliphilus denitrificans BC beta-ketoacyl synthase YP_004125276.1 654967 R 596153 CDS YP_004125277.1 319761340 10102650 complement(656199..656705) 1 NC_014910.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: dia:Dtpsy_0541 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(ACP) dehydratase FabA 656705 10102650 Alide_0621 Alicycliphilus denitrificans BC beta-hydroxyacyl-(ACP) dehydratase FabA YP_004125277.1 656199 R 596153 CDS YP_004125278.1 319761341 10102651 complement(656794..658383) 1 NC_014910.1 KEGG: ajs:Ajs_0524 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein n-acyltransferase 658383 10102651 Alide_0622 Alicycliphilus denitrificans BC apolipoprotein n-acyltransferase YP_004125278.1 656794 R 596153 CDS YP_004125279.1 319761342 10102652 complement(658383..659270) 1 NC_014910.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: ajs:Ajs_0523 CBS domain-containing protein; CBS domain-containing protein 659270 10102652 Alide_0623 Alicycliphilus denitrificans BC CBS domain-containing protein YP_004125279.1 658383 R 596153 CDS YP_004125280.1 319761343 10102653 complement(659381..660082) 1 NC_014910.1 KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase 660082 10102653 Alide_0624 Alicycliphilus denitrificans BC Gcn5-like N-acetyltransferase YP_004125280.1 659381 R 596153 CDS YP_004125281.1 319761344 10102654 complement(660233..660718) 1 NC_014910.1 KEGG: dia:Dtpsy_0537 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein 660718 10102654 Alide_0625 Alicycliphilus denitrificans BC transcription regulator asnc-type-like protein YP_004125281.1 660233 R 596153 CDS YP_004125282.1 319761345 10102655 660878..661999 1 NC_014910.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: ajs:Ajs_0520 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 661999 10102655 Alide_0626 Alicycliphilus denitrificans BC 4-hydroxyphenylpyruvate dioxygenase YP_004125282.1 660878 D 596153 CDS YP_004125283.1 319761346 10102656 662001..662825 1 NC_014910.1 TIGRFAM: phenylalanine-4-hydroxylase; KEGG: dia:Dtpsy_0534 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase-like; phenylalanine-4-hydroxylase 662825 10102656 Alide_0627 Alicycliphilus denitrificans BC phenylalanine-4-hydroxylase YP_004125283.1 662001 D 596153 CDS YP_004125284.1 319761347 10102657 662966..664201 1 NC_014910.1 KEGG: pol:Bpro_0273 branched-chain alpha-keto acid dehydrogenase E1 component; PFAM: dehydrogenase E1 component; 3-methyl-2-oxobutanoate dehydrogenase 664201 10102657 Alide_0628 Alicycliphilus denitrificans BC 3-methyl-2-oxobutanoate dehydrogenase YP_004125284.1 662966 D 596153 CDS YP_004125285.1 319761348 10102658 664241..665245 1 NC_014910.1 PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: pol:Bpro_0274 branched-chain alpha-keto acid dehydrogenase E1 component; transketolase central region protein 665245 10102658 Alide_0629 Alicycliphilus denitrificans BC transketolase central region protein YP_004125285.1 664241 D 596153 CDS YP_004125286.1 319761349 10102659 665247..666554 1 NC_014910.1 PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: bpt:Bpet3509 branched-chain alpha-keto acid dehydrogenase subunit E2; hypothetical protein 666554 10102659 Alide_0630 Alicycliphilus denitrificans BC hypothetical protein YP_004125286.1 665247 D 596153 CDS YP_004125287.1 319761350 10102660 666562..667959 1 NC_014910.1 KEGG: bch:Bcen2424_1246 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 667959 10102660 Alide_0631 Alicycliphilus denitrificans BC dihydrolipoamide dehydrogenase YP_004125287.1 666562 D 596153 CDS YP_004125288.1 319761351 10102661 668064..669002 1 NC_014910.1 TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: dac:Daci_1288 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha 669002 10102661 Alide_0632 Alicycliphilus denitrificans BC glycyl-tRNA synthetase subunit alpha YP_004125288.1 668064 D 596153 CDS YP_004125289.1 319761352 10102662 669022..671187 1 NC_014910.1 TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: ajs:Ajs_0528 glycine--tRNA ligase; glycyl-tRNA synthetase subunit beta 671187 10102662 Alide_0633 Alicycliphilus denitrificans BC glycyl-tRNA synthetase subunit beta YP_004125289.1 669022 D 596153 CDS YP_004125290.1 319761353 10102663 671233..671808 1 NC_014910.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dia:Dtpsy_0545 histidinol-phosphate phosphatase family protein; histidinol-phosphate phosphatase family protein 671808 10102663 Alide_0634 Alicycliphilus denitrificans BC histidinol-phosphate phosphatase family protein YP_004125290.1 671233 D 596153 CDS YP_004125291.1 319761354 10102664 672059..672802 1 NC_014910.1 KEGG: ajs:Ajs_0530 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 672802 10102664 Alide_0635 Alicycliphilus denitrificans BC phospholipid/glycerol acyltransferase YP_004125291.1 672059 D 596153 CDS YP_004125292.1 319761355 10102665 672805..673608 1 NC_014910.1 PFAM: protein of unknown function DUF45; KEGG: dia:Dtpsy_0547 protein of unknown function DUF45; hypothetical protein 673608 10102665 Alide_0636 Alicycliphilus denitrificans BC hypothetical protein YP_004125292.1 672805 D 596153 CDS YP_004125293.1 319761356 10102666 673669..674103 1 NC_014910.1 SMART: Rhodanese domain protein; KEGG: ajs:Ajs_0532 rhodanese domain-containing protein; rhodanese domain-containing protein 674103 10102666 Alide_0637 Alicycliphilus denitrificans BC rhodanese domain-containing protein YP_004125293.1 673669 D 596153 CDS YP_004125294.1 319761357 10102667 complement(674108..674596) 1 NC_014910.1 KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; transport-associated; SMART: Peptidoglycan-binding LysM; peptidoglycan-binding lysin domain-containing protein 674596 10102667 Alide_0638 Alicycliphilus denitrificans BC peptidoglycan-binding lysin domain-containing protein YP_004125294.1 674108 R 596153 CDS YP_004125295.1 319761358 10102668 674743..675519 1 NC_014910.1 KEGG: dia:Dtpsy_0550 pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; Baf family transcriptional activator 675519 10102668 Alide_0639 Alicycliphilus denitrificans BC Baf family transcriptional activator YP_004125295.1 674743 D 596153 CDS YP_004125296.1 319761359 10102669 complement(675516..676193) 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: dia:Dtpsy_0551 transcriptional regulator, TetR family; regulatory protein tetr 676193 10102669 Alide_0640 Alicycliphilus denitrificans BC regulatory protein tetr YP_004125296.1 675516 R 596153 CDS YP_004125297.1 319761360 10102670 complement(676351..676794) 1 NC_014910.1 KEGG: dia:Dtpsy_0552 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; poly(hydroxyalkanoate) granule-associated protein 676794 10102670 Alide_0641 Alicycliphilus denitrificans BC poly(hydroxyalkanoate) granule-associated protein YP_004125297.1 676351 R 596153 CDS YP_004125298.1 319761361 10102671 676993..678054 1 NC_014910.1 KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dtdp-glucose 4,6-dehydratase 678054 10102671 Alide_0642 Alicycliphilus denitrificans BC dtdp-glucose 4,6-dehydratase YP_004125298.1 676993 D 596153 CDS YP_004125299.1 319761362 10102672 678051..678929 1 NC_014910.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: ajs:Ajs_0538 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; dtdp-4-dehydrorhamnose reductase 678929 10102672 Alide_0643 Alicycliphilus denitrificans BC dtdp-4-dehydrorhamnose reductase YP_004125299.1 678051 D 596153 CDS YP_004125300.1 319761363 10102673 678940..679830 1 NC_014910.1 KEGG: bvi:Bcep1808_3215 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 679830 10102673 Alide_0644 Alicycliphilus denitrificans BC glucose-1-phosphate thymidylyltransferase YP_004125300.1 678940 D 596153 CDS YP_004125301.1 319761364 10102674 679830..680375 1 NC_014910.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: dia:Dtpsy_0556 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dtdp-4-dehydrorhamnose 3,5-epimerase 680375 10102674 Alide_0645 Alicycliphilus denitrificans BC dtdp-4-dehydrorhamnose 3,5-epimerase YP_004125301.1 679830 D 596153 CDS YP_004125302.1 319761365 10102675 680366..681547 1 NC_014910.1 PFAM: protein of unknown function DUF1972; glycosyl transferase group 1; KEGG: gme:Gmet_2169 glycosyltransferase-like protein; hypothetical protein 681547 10102675 Alide_0646 Alicycliphilus denitrificans BC hypothetical protein YP_004125302.1 680366 D 596153 CDS YP_004125303.1 319761366 10102676 681544..682455 1 NC_014910.1 KEGG: ajs:Ajs_0541 rhamnosyltransferase; TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase family 2; rhamnosyltransferase 682455 10102676 Alide_0647 Alicycliphilus denitrificans BC rhamnosyltransferase YP_004125303.1 681544 D 596153 CDS YP_004125304.1 319761367 10102677 682463..684166 1 NC_014910.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: vei:Veis_0688 general secretory pathway protein E; type II secretion system protein e 684166 10102677 Alide_0648 Alicycliphilus denitrificans BC type II secretion system protein e YP_004125304.1 682463 D 596153 CDS YP_004125305.1 319761368 10102678 684159..685370 1 NC_014910.1 PFAM: Type II secretion system F domain; KEGG: eba:ebA1619 general secretion pathway protein F; type II secretion system f domain-containing protein 685370 10102678 Alide_0649 Alicycliphilus denitrificans BC type II secretion system f domain-containing protein YP_004125305.1 684159 D 596153 CDS YP_004125306.1 319761369 10102679 685397..685837 1 NC_014910.1 KEGG: aav:Aave_4158 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein g 685837 10102679 Alide_0650 Alicycliphilus denitrificans BC general secretion pathway protein g YP_004125306.1 685397 D 596153 CDS YP_004125307.1 319761370 10102680 685867..686349 1 NC_014910.1 KEGG: dac:Daci_1302 general secretion pathway protein H; general secretion pathway protein h 686349 10102680 Alide_0651 Alicycliphilus denitrificans BC general secretion pathway protein h YP_004125307.1 685867 D 596153 CDS YP_004125308.1 319761371 10102681 686346..686747 1 NC_014910.1 KEGG: vei:Veis_0684 general secretion pathway protein I; hypothetical protein 686747 10102681 Alide_0652 Alicycliphilus denitrificans BC hypothetical protein YP_004125308.1 686346 D 596153 CDS YP_004125309.1 319761372 10102682 686744..687355 1 NC_014910.1 KEGG: vei:Veis_0683 general secretion pathway protein J; hypothetical protein 687355 10102682 Alide_0653 Alicycliphilus denitrificans BC hypothetical protein YP_004125309.1 686744 D 596153 CDS YP_004125310.1 319761373 10102683 687352..688263 1 NC_014910.1 KEGG: eba:ebA1612 general secretory pathway protein K; hypothetical protein 688263 10102683 Alide_0654 Alicycliphilus denitrificans BC hypothetical protein YP_004125310.1 687352 D 596153 CDS YP_004125311.1 319761374 10102684 688260..689273 1 NC_014910.1 PFAM: Fimbrial assembly family protein; KEGG: aav:Aave_4153 fimbrial assembly family protein; fimbrial assembly family protein 689273 10102684 Alide_0655 Alicycliphilus denitrificans BC fimbrial assembly family protein YP_004125311.1 688260 D 596153 CDS YP_004125312.1 319761375 10102685 689270..689818 1 NC_014910.1 PFAM: General secretion pathway protein M; KEGG: vei:Veis_0680 general secretion pathway protein M; general secretion pathway protein m 689818 10102685 Alide_0656 Alicycliphilus denitrificans BC general secretion pathway protein m YP_004125312.1 689270 D 596153 CDS YP_004125313.1 319761376 10102686 689815..690300 1 NC_014910.1 KEGG: fgr:FG01491.1 hypothetical protein; hypothetical protein 690300 10102686 Alide_0657 Alicycliphilus denitrificans BC hypothetical protein YP_004125313.1 689815 D 596153 CDS YP_004125314.1 319761377 10102687 690474..692777 1 NC_014910.1 KEGG: eba:ebA1602 general (type II) secretion pathway (GSP) D protein; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein d 692777 10102687 Alide_0658 Alicycliphilus denitrificans BC general secretion pathway protein d YP_004125314.1 690474 D 596153 CDS YP_004125315.1 319761378 10102688 692992..693435 1 NC_014910.1 KEGG: dac:Daci_1310 hypothetical protein; hypothetical protein 693435 10102688 Alide_0659 Alicycliphilus denitrificans BC hypothetical protein YP_004125315.1 692992 D 596153 CDS YP_004125316.1 319761379 10102689 693609..694457 1 NC_014910.1 KEGG: azc:AZC_2635 hypothetical protein; hypothetical protein 694457 10102689 Alide_0660 Alicycliphilus denitrificans BC hypothetical protein YP_004125316.1 693609 D 596153 CDS YP_004125317.1 319761380 10102690 694570..695670 1 NC_014910.1 KEGG: dre:541320 integrin, alpha 6b; hypothetical protein 695670 10102690 Alide_0661 Alicycliphilus denitrificans BC hypothetical protein YP_004125317.1 694570 D 596153 CDS YP_004125318.1 319761381 10102691 695716..696597 1 NC_014910.1 KEGG: aco:Amico_0081 PpiC-type peptidyl-prolyl cis-trans isomerase; hypothetical protein 696597 10102691 Alide_0662 Alicycliphilus denitrificans BC hypothetical protein YP_004125318.1 695716 D 596153 CDS YP_004125319.1 319761382 10102692 696648..697319 1 NC_014910.1 PFAM: Methyltransferase type 11; KEGG: pnu:Pnuc_0320 methyltransferase type 11; type 11 methyltransferase 697319 10102692 Alide_0663 Alicycliphilus denitrificans BC type 11 methyltransferase YP_004125319.1 696648 D 596153 CDS YP_004125320.1 319761383 10102693 697506..698483 1 NC_014910.1 PFAM: glycosyl transferase family 2; KEGG: ter:Tery_4437 glycosyl transferase family protein; family 2 glycosyl transferase 698483 10102693 Alide_0664 Alicycliphilus denitrificans BC family 2 glycosyl transferase YP_004125320.1 697506 D 596153 CDS YP_004125321.1 319761384 10102694 698630..699793 1 NC_014910.1 PFAM: glycosyl transferase group 1; KEGG: lxx:Lxx04950 glycosyl transferase; group 1 glycosyl transferase 699793 10102694 Alide_0665 Alicycliphilus denitrificans BC group 1 glycosyl transferase YP_004125321.1 698630 D 596153 CDS YP_004125322.1 319761385 10102695 699864..700688 1 NC_014910.1 PFAM: ABC transporter; KEGG: mag:amb1063 ABC-type polysaccharide/polyol phosphate export systems; ABC transporter 700688 10102695 Alide_0666 Alicycliphilus denitrificans BC ABC transporter YP_004125322.1 699864 D 596153 CDS YP_004125323.1 319761386 10102696 700688..701908 1 NC_014910.1 KEGG: vei:Veis_0673 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 701908 10102696 Alide_0667 Alicycliphilus denitrificans BC ABC transporter YP_004125323.1 700688 D 596153 CDS YP_004125324.1 319761387 10102697 701890..702801 1 NC_014910.1 KEGG: ajs:Ajs_3056 lipid A biosynthesis acyltransferase; hypothetical protein 702801 10102697 Alide_0668 Alicycliphilus denitrificans BC hypothetical protein YP_004125324.1 701890 D 596153 CDS YP_004125325.1 319761388 10102698 702794..703798 1 NC_014910.1 PFAM: Methyltransferase type 11; KEGG: azl:AZL_f01750 hypothetical protein; type 11 methyltransferase 703798 10102698 Alide_0669 Alicycliphilus denitrificans BC type 11 methyltransferase YP_004125325.1 702794 D 596153 CDS YP_004125326.1 319761389 10102699 703815..704459 1 NC_014910.1 PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc0977 transglycosylase signal peptide protein; lytic transglycosylase 704459 10102699 Alide_0670 Alicycliphilus denitrificans BC lytic transglycosylase YP_004125326.1 703815 D 596153 CDS YP_004125327.1 319761390 10102700 704493..705593 1 NC_014910.1 PFAM: Glycosyl transferase, family 4, conserved region; KEGG: vei:Veis_1227 glycosyl transferase family protein; glycosyl transferase 705593 10102700 Alide_0671 Alicycliphilus denitrificans BC glycosyl transferase YP_004125327.1 704493 D 596153 CDS YP_004125328.1 319761391 10102701 705654..706544 1 NC_014910.1 TIGRFAM: acetylglutamate kinase; KEGG: ajs:Ajs_0588 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 706544 10102701 Alide_0672 Alicycliphilus denitrificans BC acetylglutamate kinase YP_004125328.1 705654 D 596153 CDS YP_004125329.1 319761392 10102702 706727..707362 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: ajs:Ajs_0589 nucleoid occlusion protein; regulatory protein tetr 707362 10102702 Alide_0673 Alicycliphilus denitrificans BC regulatory protein tetr YP_004125329.1 706727 D 596153 CDS YP_004125330.1 319761393 10102703 707504..708160 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: dia:Dtpsy_0570 transcriptional regulator, TetR family; regulatory protein tetr 708160 10102703 Alide_0674 Alicycliphilus denitrificans BC regulatory protein tetr YP_004125330.1 707504 D 596153 CDS YP_004125331.1 319761394 10102704 708208..710004 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_0571 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 710004 10102704 Alide_0675 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004125331.1 708208 D 596153 CDS YP_004125332.1 319761395 10102705 710075..710503 1 NC_014910.1 KEGG: dia:Dtpsy_0572 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2147; hypothetical protein 710503 10102705 Alide_0676 Alicycliphilus denitrificans BC hypothetical protein YP_004125332.1 710075 D 596153 CDS YP_004125333.1 319761396 10102706 710525..712927 1 NC_014910.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; Enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_1339 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 712927 10102706 Alide_0677 Alicycliphilus denitrificans BC 3-hydroxyacyl-CoA dehydrogenase YP_004125333.1 710525 D 596153 CDS YP_004125334.1 319761397 10102707 712948..714141 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: mpt:Mpe_A0416 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 714141 10102707 Alide_0678 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004125334.1 712948 D 596153 CDS YP_004125335.1 319761398 10102708 714185..715018 1 NC_014910.1 KEGG: dia:Dtpsy_0576 hypothetical protein; hypothetical protein 715018 10102708 Alide_0679 Alicycliphilus denitrificans BC hypothetical protein YP_004125335.1 714185 D 596153 CDS YP_004125336.1 319761399 10102709 715026..715802 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_0577 enoyl-CoA hydratase; enoyl-CoA hydratase 715802 10102709 Alide_0680 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004125336.1 715026 D 596153 CDS YP_004125337.1 319761400 10102710 716058..716615 1 NC_014910.1 PFAM: protein of unknown function DUF583; KEGG: dia:Dtpsy_0579 protein of unknown function DUF583; hypothetical protein 716615 10102710 Alide_0681 Alicycliphilus denitrificans BC hypothetical protein YP_004125337.1 716058 D 596153 CDS YP_004125338.1 319761401 10102711 complement(716667..717092) 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0601 thioesterase superfamily protein; thioesterase superfamily protein 717092 10102711 Alide_0682 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004125338.1 716667 R 596153 CDS YP_004125339.1 319761402 10102712 717135..719024 1 NC_014910.1 KEGG: ajs:Ajs_0602 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; ABC transporter 719024 10102712 Alide_0683 Alicycliphilus denitrificans BC ABC transporter YP_004125339.1 717135 D 596153 CDS YP_004125340.1 319761403 10102713 719354..720970 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reh:PHG398 acyl-CoA synthetase; AMP-dependent synthetase/ligase 720970 10102713 Alide_0684 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004125340.1 719354 D 596153 CDS YP_004125341.1 319761404 10102714 720974..721444 1 NC_014910.1 PFAM: MaoC domain protein dehydratase; KEGG: reh:PHG397 hypothetical protein; MaoC domain-containing protein 721444 10102714 Alide_0685 Alicycliphilus denitrificans BC MaoC domain-containing protein YP_004125341.1 720974 D 596153 CDS YP_004125342.1 319761405 10102715 721484..722479 1 NC_014910.1 KEGG: reh:PHG396 NagM-like protein; nagm-like protein 722479 10102715 Alide_0686 Alicycliphilus denitrificans BC nagm-like protein YP_004125342.1 721484 D 596153 CDS YP_004125343.1 319761406 10102716 722528..723505 1 NC_014910.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: reh:PHG395 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 723505 10102716 Alide_0687 Alicycliphilus denitrificans BC 2-nitropropane dioxygenase YP_004125343.1 722528 D 596153 CDS YP_004125344.1 319761407 10102717 723514..724503 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reh:PHG401 regulatory protein; LysR family transcriptional regulator 724503 10102717 Alide_0688 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125344.1 723514 D 596153 CDS YP_004125345.1 319761408 10102718 724552..725889 1 NC_014910.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase; mazg nucleotide pyrophosphohydrolase 725889 10102718 Alide_0689 Alicycliphilus denitrificans BC mazg nucleotide pyrophosphohydrolase YP_004125345.1 724552 D 596153 CDS YP_004125346.1 319761409 10102719 complement(725944..726975) 1 NC_014910.1 KEGG: ajs:Ajs_0604 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; trap dicarboxylate transporter subunit DctP 726975 10102719 Alide_0690 Alicycliphilus denitrificans BC trap dicarboxylate transporter subunit DctP YP_004125346.1 725944 R 596153 CDS YP_004125347.1 319761410 10102720 complement(726999..728297) 1 NC_014910.1 KEGG: ajs:Ajs_0605 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM 728297 10102720 Alide_0691 Alicycliphilus denitrificans BC trap dicarboxylate transporter subunit DctM YP_004125347.1 726999 R 596153 CDS YP_004125348.1 319761411 10102721 complement(728294..728875) 1 NC_014910.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ajs:Ajs_0606 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter dctq component 728875 10102721 Alide_0692 Alicycliphilus denitrificans BC tripartite ATP-independent periplasmic transporter dctq component YP_004125348.1 728294 R 596153 CDS YP_004125349.1 319761412 10102722 729042..729989 1 NC_014910.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dia:Dtpsy_0586 transcriptional regulator, LysR family; LysR family transcriptional regulator 729989 10102722 Alide_0693 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125349.1 729042 D 596153 CDS YP_004125350.1 319761413 10102723 730193..731092 1 NC_014910.1 KEGG: dia:Dtpsy_0588 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 731092 10102723 Alide_0694 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125350.1 730193 D 596153 CDS YP_004125351.1 319761414 10102724 731196..731948 1 NC_014910.1 KEGG: dia:Dtpsy_0589 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 731948 10102724 Alide_0695 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004125351.1 731196 D 596153 CDS YP_004125352.1 319761415 10102725 731950..732621 1 NC_014910.1 KEGG: dia:Dtpsy_0590 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 732621 10102725 Alide_0696 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004125352.1 731950 D 596153 CDS YP_004125353.1 319761416 10102726 732646..733383 1 NC_014910.1 KEGG: dia:Dtpsy_0591 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 733383 10102726 Alide_0697 Alicycliphilus denitrificans BC ABC transporter YP_004125353.1 732646 D 596153 CDS YP_004125354.1 319761417 10102727 complement(733489..734523) 1 NC_014910.1 KEGG: dia:Dtpsy_0592 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin; ornithine cyclodeaminase 734523 10102727 Alide_0698 Alicycliphilus denitrificans BC ornithine cyclodeaminase YP_004125354.1 733489 R 596153 CDS YP_004125355.1 319761418 10102728 complement(734584..735405) 1 NC_014910.1 KEGG: ajs:Ajs_0616 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; HAD-superfamily hydrolase 735405 10102728 Alide_0699 Alicycliphilus denitrificans BC HAD-superfamily hydrolase YP_004125355.1 734584 R 596153 CDS YP_004125356.1 319761419 10102729 complement(735408..737033) 1 NC_014910.1 KEGG: ctt:CtCNB1_0527 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; peptide chain release factor 3 737033 10102729 Alide_0700 Alicycliphilus denitrificans BC peptide chain release factor 3 YP_004125356.1 735408 R 596153 CDS YP_004125357.1 319761420 10102730 complement(737136..737906) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0646 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 737906 10102730 Alide_0701 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004125357.1 737136 R 596153 CDS YP_004125358.1 319761421 10102731 738148..739578 1 NC_014910.1 TIGRFAM: adenosylhomocysteinase; KEGG: dia:Dtpsy_0597 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 739578 10102731 Alide_0702 Alicycliphilus denitrificans BC adenosylhomocysteinase YP_004125358.1 738148 D 596153 CDS YP_004125359.1 319761422 10102732 739685..740686 1 NC_014910.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_0619 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase rrmj/ftsj 740686 10102732 Alide_0703 Alicycliphilus denitrificans BC ribosomal RNA methyltransferase rrmj/ftsj YP_004125359.1 739685 D 596153 CDS YP_004125360.1 319761423 10102733 740683..741510 1 NC_014910.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dia:Dtpsy_0599 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 741510 10102733 Alide_0704 Alicycliphilus denitrificans BC 5,10-methylenetetrahydrofolate reductase YP_004125360.1 740683 D 596153 CDS YP_004125361.1 319761424 10102734 741738..742256 1 NC_014910.1 KEGG: ajs:Ajs_0622 rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; rare lipoprotein a 742256 10102734 Alide_0705 Alicycliphilus denitrificans BC rare lipoprotein a YP_004125361.1 741738 D 596153 CDS YP_004125362.1 319761425 10102735 complement(742257..743174) 1 NC_014910.1 PFAM: protein of unknown function DUF519; KEGG: dia:Dtpsy_0602 protein of unknown function DUF519; hypothetical protein 743174 10102735 Alide_0706 Alicycliphilus denitrificans BC hypothetical protein YP_004125362.1 742257 R 596153 CDS YP_004125363.1 319761426 10102736 743351..745147 1 NC_014910.1 KEGG: ajs:Ajs_0624 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; serine/threonine-protein kinase-like domain-containing protein 745147 10102736 Alide_0707 Alicycliphilus denitrificans BC serine/threonine-protein kinase-like domain-containing protein YP_004125363.1 743351 D 596153 CDS YP_004125364.1 319761427 10102737 745253..745720 1 NC_014910.1 KEGG: aav:Aave_4053 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; 50S ribosomal protein L13 745720 10102737 Alide_0708 Alicycliphilus denitrificans BC 50S ribosomal protein L13 YP_004125364.1 745253 D 596153 CDS YP_004125365.1 319761428 10102738 745730..746122 1 NC_014910.1 PFAM: ribosomal protein S9; KEGG: ctt:CtCNB1_0541 ribosomal protein S9; 30S ribosomal protein S9 746122 10102738 Alide_0709 Alicycliphilus denitrificans BC 30S ribosomal protein S9 YP_004125365.1 745730 D 596153 CDS YP_004125366.1 319761429 10102739 746286..746660 1 NC_014910.1 KEGG: dia:Dtpsy_0608 iron-sulfur cluster insertion protein ErpA; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly accessory protein 746660 10102739 Alide_0710 Alicycliphilus denitrificans BC iron-sulfur cluster assembly accessory protein YP_004125366.1 746286 D 596153 CDS YP_004125367.1 319761430 10102740 complement(746737..747225) 1 NC_014910.1 KEGG: rfr:Rfer_0842 hypothetical protein; hypothetical protein 747225 10102740 Alide_0711 Alicycliphilus denitrificans BC hypothetical protein YP_004125367.1 746737 R 596153 CDS YP_004125368.1 319761431 10102741 complement(747617..748741) 1 NC_014910.1 PFAM: protein of unknown function UPF0075; KEGG: dia:Dtpsy_0609 anhydro-N-acetylmuramic acid kinase; hypothetical protein 748741 10102741 Alide_0712 Alicycliphilus denitrificans BC hypothetical protein YP_004125368.1 747617 R 596153 CDS YP_004125369.1 319761432 10102742 complement(748757..750139) 1 NC_014910.1 PFAM: Peptidase M23; KEGG: ajs:Ajs_0631 peptidase M23B; peptidase m23 750139 10102742 Alide_0713 Alicycliphilus denitrificans BC peptidase m23 YP_004125369.1 748757 R 596153 CDS YP_004125370.1 319761433 10102743 750311..751543 1 NC_014910.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; KEGG: ajs:Ajs_0632 tyrosyl-tRNA synthetase; SMART: RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 751543 10102743 Alide_0714 Alicycliphilus denitrificans BC tyrosyl-tRNA synthetase YP_004125370.1 750311 D 596153 CDS YP_004125371.1 319761434 10102744 complement(751605..752561) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0634 LysR family transcriptional regulator; LysR family transcriptional regulator 752561 10102744 Alide_0715 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125371.1 751605 R 596153 CDS YP_004125372.1 319761435 10102745 752622..754046 1 NC_014910.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: ajs:Ajs_0636 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; udp-n-acetylglucosamine pyrophosphorylase 754046 10102745 Alide_0716 Alicycliphilus denitrificans BC udp-n-acetylglucosamine pyrophosphorylase YP_004125372.1 752622 D 596153 CDS YP_004125373.1 319761436 10102746 754043..754825 1 NC_014910.1 KEGG: ajs:Ajs_0637 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; ATP-binding domain-containing protein 754825 10102746 Alide_0717 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004125373.1 754043 D 596153 CDS YP_004125374.1 319761437 10102747 complement(754854..755189) 1 NC_014910.1 KEGG: dia:Dtpsy_0617 MerR family transcriptional regulator; merr family transcriptional regulator 755189 10102747 Alide_0718 Alicycliphilus denitrificans BC merr family transcriptional regulator YP_004125374.1 754854 R 596153 CDS YP_004125375.1 319761438 10102748 complement(755192..756187) 1 NC_014910.1 KEGG: dia:Dtpsy_0618 heat shock protein DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; molecular chaperone DnaJ 756187 10102748 Alide_0719 Alicycliphilus denitrificans BC molecular chaperone DnaJ YP_004125375.1 755192 R 596153 CDS YP_004125376.1 319761439 10102749 complement(756292..756783) 1 NC_014910.1 KEGG: ajs:Ajs_0640 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein 756783 10102749 Alide_0720 Alicycliphilus denitrificans BC transcription regulator asnc-type-like protein YP_004125376.1 756292 R 596153 CDS YP_004125377.1 319761440 10102750 756918..758828 1 NC_014910.1 KEGG: dia:Dtpsy_0620 glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); glucosamine/fructose-6-phosphate aminotransferase 758828 10102750 Alide_0721 Alicycliphilus denitrificans BC glucosamine/fructose-6-phosphate aminotransferase YP_004125377.1 756918 D 596153 CDS YP_004125378.1 319761441 10102751 759177..761135 1 NC_014910.1 manually curated; KEGG: vei:Veis_4900 hypothetical protein; hypothetical protein 761135 10102751 Alide_0722 Alicycliphilus denitrificans BC hypothetical protein YP_004125378.1 759177 D 596153 CDS YP_004125379.1 319761442 10102754 complement(763505..764419) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 764419 10102754 Alide_0725 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004125379.1 763505 R 596153 CDS YP_004125380.1 319761443 10102755 complement(764416..764739) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 764739 10102755 Alide_0726 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004125380.1 764416 R 596153 CDS YP_004125381.1 319761444 10102757 complement(765493..765747) 1 NC_014910.1 KEGG: ctt:CtCNB1_4017 hypothetical protein; hypothetical protein 765747 10102757 Alide_0728 Alicycliphilus denitrificans BC hypothetical protein YP_004125381.1 765493 R 596153 CDS YP_004125382.1 319761445 10102758 complement(765821..766609) 1 NC_014910.1 PFAM: oxidoreductase molybdopterin binding; KEGG: ctt:CtCNB1_4018 oxidoreductase, molybdopterin binding protein; oxidoreductase molybdopterin binding protein 766609 10102758 Alide_0729 Alicycliphilus denitrificans BC oxidoreductase molybdopterin binding protein YP_004125382.1 765821 R 596153 CDS YP_004125383.1 319761446 10102759 complement(766606..767262) 1 NC_014910.1 KEGG: ctt:CtCNB1_4019 transmembrane hydrogenase cytochrome; transmembrane hydrogenase cytochrome 767262 10102759 Alide_0730 Alicycliphilus denitrificans BC transmembrane hydrogenase cytochrome YP_004125383.1 766606 R 596153 CDS YP_004125384.1 319761447 10102760 767358..768068 1 NC_014910.1 KEGG: pol:Bpro_0543 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 768068 10102760 Alide_0731 Alicycliphilus denitrificans BC response regulator receiver YP_004125384.1 767358 D 596153 CDS YP_004125385.1 319761448 10102761 768065..769546 1 NC_014910.1 KEGG: vap:Vapar_2987 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 769546 10102761 Alide_0732 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004125385.1 768065 D 596153 CDS YP_004125386.1 319761449 10102762 complement(769564..769911) 1 NC_014910.1 KEGG: rru:Rru_A2708 hypothetical protein; hypothetical protein 769911 10102762 Alide_0733 Alicycliphilus denitrificans BC hypothetical protein YP_004125386.1 769564 R 596153 CDS YP_004125387.1 319761450 10102763 complement(770087..770893) 1 NC_014910.1 KEGG: cja:CJA_0975 von Willebrand factor type A domain protein; PFAM: protein of unknown function DUF1555; von Willebrand factor type A; SMART: von Willebrand factor type A; hypothetical protein 770893 10102763 Alide_0734 Alicycliphilus denitrificans BC hypothetical protein YP_004125387.1 770087 R 596153 CDS YP_004125388.1 319761451 10102764 771304..772746 1 NC_014910.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: rfr:Rfer_0711 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; mannose-1-phosphate guanylyltransferase 772746 10102764 Alide_0735 Alicycliphilus denitrificans BC mannose-1-phosphate guanylyltransferase YP_004125388.1 771304 D 596153 CDS YP_004125389.1 319761452 10102765 772970..773611 1 NC_014910.1 KEGG: rfr:Rfer_0658 polysaccharide export protein; TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; Soluble ligand binding domain; polysaccharide export protein 773611 10102765 Alide_0736 Alicycliphilus denitrificans BC polysaccharide export protein YP_004125389.1 772970 D 596153 CDS YP_004125390.1 319761453 10102766 773658..775220 1 NC_014910.1 manually curated; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis; PFAM: lipopolysaccharide biosynthesis protein; polysaccharide chain length determinant protein 775220 10102766 Alide_0737 Alicycliphilus denitrificans BC polysaccharide chain length determinant protein YP_004125390.1 773658 D 596153 CDS YP_004125391.1 319761454 10102767 775229..776191 1 NC_014910.1 manually curated; KEGG: app:CAP2UW1_1413 non-specific protein-tyrosine kinase; non-specific protein-tyrosine kinase 776191 10102767 Alide_0738 Alicycliphilus denitrificans BC non-specific protein-tyrosine kinase YP_004125391.1 775229 D 596153 CDS YP_004125392.1 319761455 10102768 776213..777868 1 NC_014910.1 TIGRFAM: PEP-CTERM system associated protein; KEGG: rfr:Rfer_0661 hypothetical protein; pep-cterm system associated protein 777868 10102768 Alide_0739 Alicycliphilus denitrificans BC pep-cterm system associated protein YP_004125392.1 776213 D 596153 CDS YP_004125393.1 319761456 10102769 777872..778972 1 NC_014910.1 KEGG: rfr:Rfer_0662 ATPase; TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase; secretion atpase, pep-cterm locus subfamily 778972 10102769 Alide_0740 Alicycliphilus denitrificans BC secretion atpase, pep-cterm locus subfamily YP_004125393.1 777872 D 596153 CDS YP_004125394.1 319761457 10102770 778981..779847 1 NC_014910.1 KEGG: app:CAP2UW1_1417 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; polysaccharide deacetylase 779847 10102770 Alide_0741 Alicycliphilus denitrificans BC polysaccharide deacetylase YP_004125394.1 778981 D 596153 CDS YP_004125395.1 319761458 10102771 779855..780901 1 NC_014910.1 KEGG: rfr:Rfer_0665 hypothetical protein; manually curated; TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; FemAB-like protein 780901 10102771 Alide_0742 Alicycliphilus denitrificans BC FemAB-like protein YP_004125395.1 779855 D 596153 CDS YP_004125396.1 319761459 10102772 780915..782153 1 NC_014910.1 KEGG: dar:Daro_2405 glycosyl transferase, group 1; TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; sugar transferase, pep-cterm/epsh1 system associated 782153 10102772 Alide_0743 Alicycliphilus denitrificans BC sugar transferase, pep-cterm/epsh1 system associated YP_004125396.1 780915 D 596153 CDS YP_004125397.1 319761460 10102773 782131..783732 1 NC_014910.1 KEGG: rfr:Rfer_0666 hypothetical protein; TIGRFAM: exosortase 1; eight transmembrane protein EpsH; EpsI family protein; PFAM: Exosortase EpsH-related; exosortase 783732 10102773 Alide_0744 Alicycliphilus denitrificans BC exosortase YP_004125397.1 782131 D 596153 CDS YP_004125398.1 319761461 10102774 783735..785645 1 NC_014910.1 TIGRFAM: exosortase 1 system-associated amidotransferase 1; asparagine synthase (glutamine-hydrolyzing); KEGG: rfr:Rfer_0669 asparagine synthase, glutamine-hydrolyzing; PFAM: asparagine synthase; glutamine amidotransferase class-II; exosortase 785645 10102774 Alide_0745 Alicycliphilus denitrificans BC exosortase YP_004125398.1 783735 D 596153 CDS YP_004125399.1 319761462 10102775 785638..786780 1 NC_014910.1 KEGG: dar:Daro_2407 glycosyl transferase, group 1; TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; sugar transferase, pep-cterm/epsh1 system associated 786780 10102775 Alide_0746 Alicycliphilus denitrificans BC sugar transferase, pep-cterm/epsh1 system associated YP_004125399.1 785638 D 596153 CDS YP_004125400.1 319761463 10102776 786794..788011 1 NC_014910.1 KEGG: dar:Daro_2409 glycosyl transferase, group 1; manually curated; PFAM: glycosyl transferase group 1; group 1 glycosyl transferase 788011 10102776 Alide_0747 Alicycliphilus denitrificans BC group 1 glycosyl transferase YP_004125400.1 786794 D 596153 CDS YP_004125401.1 319761464 10102777 788008..789159 1 NC_014910.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: gme:Gmet_1489 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; udp-n-acetylglucosamine 2-epimerase 789159 10102777 Alide_0748 Alicycliphilus denitrificans BC udp-n-acetylglucosamine 2-epimerase YP_004125401.1 788008 D 596153 CDS YP_004125402.1 319761465 10102778 789149..790369 1 NC_014910.1 KEGG: geo:Geob_3227 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 790369 10102778 Alide_0749 Alicycliphilus denitrificans BC nucleotide sugar dehydrogenase YP_004125402.1 789149 D 596153 CDS YP_004125403.1 319761466 10102779 790392..791618 1 NC_014910.1 PFAM: glycosyl transferase group 1; KEGG: hse:Hsero_2751 glycosyltransferase 1 protein; group 1 glycosyl transferase 791618 10102779 Alide_0750 Alicycliphilus denitrificans BC group 1 glycosyl transferase YP_004125403.1 790392 D 596153 CDS YP_004125404.1 319761467 10102780 791714..791845 1 NC_014910.1 hypothetical protein 791845 10102780 Alide_0751 Alicycliphilus denitrificans BC hypothetical protein YP_004125404.1 791714 D 596153 CDS YP_004125405.1 319761468 10102781 792011..793336 1 NC_014910.1 KEGG: hse:Hsero_2764 O-antigen polymerase; TIGRFAM: wzy family polymerase, exosortase system type 1 associated; PFAM: O-antigen polymerase; wzy family polymerase, exosortase system type 1 associated 793336 10102781 Alide_0752 Alicycliphilus denitrificans BC wzy family polymerase, exosortase system type 1 associated YP_004125405.1 792011 D 596153 CDS YP_004125406.1 319761469 10102782 793333..794295 1 NC_014910.1 PFAM: polysaccharide deacetylase; KEGG: azo:azo3266 polysaccharide deacetylase; polysaccharide deacetylase 794295 10102782 Alide_0753 Alicycliphilus denitrificans BC polysaccharide deacetylase YP_004125406.1 793333 D 596153 CDS YP_004125407.1 319761470 10102783 794292..795305 1 NC_014910.1 PFAM: polysaccharide deacetylase; KEGG: nmu:Nmul_A0301 polysaccharide deacetylase; polysaccharide deacetylase 795305 10102783 Alide_0754 Alicycliphilus denitrificans BC polysaccharide deacetylase YP_004125407.1 794292 D 596153 CDS YP_004125408.1 319761471 10102784 795311..796354 1 NC_014910.1 KEGG: psl:Psta_3837 hypothetical protein; hypothetical protein 796354 10102784 Alide_0755 Alicycliphilus denitrificans BC hypothetical protein YP_004125408.1 795311 D 596153 CDS YP_004125409.1 319761472 10102785 complement(796355..797302) 1 NC_014910.1 PFAM: glycosyl transferase family 2; KEGG: aeh:Mlg_0132 glycosyl transferase family protein; family 2 glycosyl transferase 797302 10102785 Alide_0756 Alicycliphilus denitrificans BC family 2 glycosyl transferase YP_004125409.1 796355 R 596153 CDS YP_004125410.1 319761473 10102786 complement(797372..798820) 1 NC_014910.1 PFAM: polysaccharide biosynthesis protein; KEGG: nwa:Nwat_1744 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 798820 10102786 Alide_0757 Alicycliphilus denitrificans BC polysaccharide biosynthesis protein YP_004125410.1 797372 R 596153 CDS YP_004125411.1 319761474 10102787 798978..800255 1 NC_014910.1 KEGG: reu:Reut_B5375 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 800255 10102787 Alide_0758 Alicycliphilus denitrificans BC nucleotide sugar dehydrogenase YP_004125411.1 798978 D 596153 CDS YP_004125412.1 319761475 10102788 800258..801334 1 NC_014910.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: abo:ABO_0909 4-epimerase; NAD-dependent epimerase/dehydratase 801334 10102788 Alide_0759 Alicycliphilus denitrificans BC NAD-dependent epimerase/dehydratase YP_004125412.1 800258 D 596153 CDS YP_004125413.1 319761476 10102789 complement(801461..803365) 1 NC_014910.1 PFAM: sulfatase; KEGG: eli:ELI_12100 sulfatase; sulfatase 803365 10102789 Alide_0760 Alicycliphilus denitrificans BC sulfatase YP_004125413.1 801461 R 596153 CDS YP_004125414.1 319761477 10102790 complement(803665..805563) 1 NC_014910.1 KEGG: hse:Hsero_2760 hypothetical protein; hypothetical protein 805563 10102790 Alide_0761 Alicycliphilus denitrificans BC hypothetical protein YP_004125414.1 803665 R 596153 CDS YP_004125415.1 319761478 10102791 806467..807327 1 NC_014910.1 manually curated; KEGG: alv:Alvin_1802 hypothetical protein; hypothetical protein 807327 10102791 Alide_0762 Alicycliphilus denitrificans BC hypothetical protein YP_004125415.1 806467 D 596153 CDS YP_004125416.1 319761479 10102792 complement(807433..808191) 1 NC_014910.1 PFAM: protein of unknown function DUF1555; KEGG: ppd:Ppro_2434 hypothetical protein; hypothetical protein 808191 10102792 Alide_0763 Alicycliphilus denitrificans BC hypothetical protein YP_004125416.1 807433 R 596153 CDS YP_004125417.1 319761480 10102793 complement(808386..809228) 1 NC_014910.1 KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family protein; TIGRFAM: hydrolase, ortholog 1, exosortase system type 1 associated; PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase 809228 10102793 Alide_0764 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004125417.1 808386 R 596153 CDS YP_004125418.1 319761481 10102794 complement(809225..810079) 1 NC_014910.1 TIGRFAM: hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: app:CAP2UW1_4344 hydrolase, exosortase system type 1 associated; alpha/beta hydrolase 810079 10102794 Alide_0765 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004125418.1 809225 R 596153 CDS YP_004125419.1 319761482 10102795 complement(810081..810341) 1 NC_014910.1 KEGG: rfr:Rfer_0698 hypothetical protein; hypothetical protein 810341 10102795 Alide_0766 Alicycliphilus denitrificans BC hypothetical protein YP_004125419.1 810081 R 596153 CDS YP_004125420.1 319761483 10102796 810425..812071 1 NC_014910.1 KEGG: app:CAP2UW1_1626 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase and ligase; acyl-CoA ligase 812071 10102796 Alide_0767 Alicycliphilus denitrificans BC acyl-CoA ligase YP_004125420.1 810425 D 596153 CDS YP_004125421.1 319761484 10102797 812058..813263 1 NC_014910.1 KEGG: rfr:Rfer_0700 Orn/DAP/Arg decarboxylase 2; TIGRFAM: pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2; pyridoxal-dependent decarboxylase, exosortase system type 1 associated 813263 10102797 Alide_0768 Alicycliphilus denitrificans BC pyridoxal-dependent decarboxylase, exosortase system type 1 associated YP_004125421.1 812058 D 596153 CDS YP_004125422.1 319761485 10102798 813266..815347 1 NC_014910.1 TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rfr:Rfer_0703 periplasmic sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; pep-cterm system histidine kinase 815347 10102798 Alide_0769 Alicycliphilus denitrificans BC pep-cterm system histidine kinase YP_004125422.1 813266 D 596153 CDS YP_004125423.1 319761486 10102799 815356..816717 1 NC_014910.1 TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: rfr:Rfer_0704 two component, sigma54 specific, fis family transcriptional regulator; SMART: response regulator receiver; AAA ATPase; pep-cterm system response regulator 816717 10102799 Alide_0770 Alicycliphilus denitrificans BC pep-cterm system response regulator YP_004125423.1 815356 D 596153 CDS YP_004125424.1 319761487 10102800 817007..819787 1 NC_014910.1 KEGG: rfr:Rfer_0705 tetratricopeptide TPR_2; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; pep-cterm system tpr-repeat lipoprotein 819787 10102800 Alide_0771 Alicycliphilus denitrificans BC pep-cterm system tpr-repeat lipoprotein YP_004125424.1 817007 D 596153 CDS YP_004125425.1 319761488 10102801 819837..820616 1 NC_014910.1 KEGG: rfr:Rfer_0710 peptidase S1 and S6, chymotrypsin/Hap; manually curated; PFAM: peptidase S1 and S6 chymotrypsin/Hap; peptidase s1 and s6 chymotrypsin/hap 820616 10102801 Alide_0772 Alicycliphilus denitrificans BC peptidase s1 and s6 chymotrypsin/hap YP_004125425.1 819837 D 596153 CDS YP_004125426.1 319761489 10102802 complement(820644..820913) 1 NC_014910.1 KEGG: dia:Dtpsy_0625 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor if-1 820913 10102802 Alide_0773 Alicycliphilus denitrificans BC translation initiation factor if-1 YP_004125426.1 820644 R 596153 CDS YP_004125427.1 319761490 10102803 complement(821261..821914) 1 NC_014910.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: dia:Dtpsy_0631 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 821914 10102803 Alide_0774 Alicycliphilus denitrificans BC 2OG-Fe(II) oxygenase YP_004125427.1 821261 R 596153 CDS YP_004125428.1 319761491 10102804 822005..823513 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0653 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 823513 10102804 Alide_0775 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004125428.1 822005 D 596153 CDS YP_004125429.1 319761492 10102805 823610..824329 1 NC_014910.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ctt:CtCNB1_2425 FAD-binding oxidoreductase; oxidoreductase fad/nad(p)-binding domain-containing protein 824329 10102805 Alide_0776 Alicycliphilus denitrificans BC oxidoreductase fad/nad(p)-binding domain-containing protein YP_004125429.1 823610 D 596153 CDS YP_004125430.1 319761493 10102806 complement(824323..825903) 1 NC_014910.1 KEGG: vap:Vapar_3422 hypothetical protein; hypothetical protein 825903 10102806 Alide_0777 Alicycliphilus denitrificans BC hypothetical protein YP_004125430.1 824323 R 596153 CDS YP_004125431.1 319761494 10102807 complement(825915..826523) 1 NC_014910.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; Peptidoglycan-binding domain 1 protein; KEGG: pph:Ppha_2260 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin; peptidase m15b and m15c dd-carboxypeptidase vany/endolysin 826523 10102807 Alide_0778 Alicycliphilus denitrificans BC peptidase m15b and m15c dd-carboxypeptidase vany/endolysin YP_004125431.1 825915 R 596153 CDS YP_004125432.1 319761495 10102808 826699..827370 1 NC_014910.1 PFAM: DSBA oxidoreductase; KEGG: ajs:Ajs_0654 DsbA oxidoreductase; dsba oxidoreductase 827370 10102808 Alide_0779 Alicycliphilus denitrificans BC dsba oxidoreductase YP_004125432.1 826699 D 596153 CDS YP_004125433.1 319761496 10102809 complement(827442..827924) 1 NC_014910.1 PFAM: CreA family protein; KEGG: dia:Dtpsy_0634 CreA family protein; crea family protein 827924 10102809 Alide_0780 Alicycliphilus denitrificans BC crea family protein YP_004125433.1 827442 R 596153 CDS YP_004125434.1 319761497 10102810 complement(827921..830512) 1 NC_014910.1 KEGG: dia:Dtpsy_0635 cyanophycin synthetase; TIGRFAM: cyanophycin synthetase; PFAM: Mur ligase middle domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; cytoplasmic peptidoglycan synthetase domain protein; cyanophycin synthetase 830512 10102810 Alide_0781 Alicycliphilus denitrificans BC cyanophycin synthetase YP_004125434.1 827921 R 596153 CDS YP_004125435.1 319761498 10102811 complement(830584..832764) 1 NC_014910.1 TIGRFAM: cyanophycin synthetase; KEGG: ctt:CtCNB1_0610 cyanophycin synthetase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; cyanophycin synthetase 832764 10102811 Alide_0782 Alicycliphilus denitrificans BC cyanophycin synthetase YP_004125435.1 830584 R 596153 CDS YP_004125436.1 319761499 10102812 833014..835326 1 NC_014910.1 manually curated; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dia:Dtpsy_0637 ABC transporter related; SMART: AAA ATPase; ABC transporter 835326 10102812 Alide_0783 Alicycliphilus denitrificans BC ABC transporter YP_004125436.1 833014 D 596153 CDS YP_004125437.1 319761500 10102813 835341..835829 1 NC_014910.1 KEGG: dia:Dtpsy_0638 hypothetical protein; hypothetical protein 835829 10102813 Alide_0784 Alicycliphilus denitrificans BC hypothetical protein YP_004125437.1 835341 D 596153 CDS YP_004125438.1 319761501 10102814 835970..836410 1 NC_014910.1 KEGG: dia:Dtpsy_0639 hypothetical protein; hypothetical protein 836410 10102814 Alide_0785 Alicycliphilus denitrificans BC hypothetical protein YP_004125438.1 835970 D 596153 CDS YP_004125439.1 319761502 10102815 836534..838588 1 NC_014910.1 KEGG: vap:Vapar_5542 elongation factor G; TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain-containing protein; small gtp-binding protein 838588 10102815 Alide_0786 Alicycliphilus denitrificans BC small gtp-binding protein YP_004125439.1 836534 D 596153 CDS YP_004125440.1 319761503 10102816 complement(838602..839534) 1 NC_014910.1 KEGG: vei:Veis_1630 5-nucleotidase; PFAM: 5-nucleotidase; 5'-nucleotidase 839534 10102816 Alide_0787 Alicycliphilus denitrificans BC 5'-nucleotidase YP_004125440.1 838602 R 596153 CDS YP_004125441.1 319761504 10102817 complement(839539..840768) 1 NC_014910.1 KEGG: dia:Dtpsy_0642 general secretion pathway protein F; TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain; general secretion pathway protein f 840768 10102817 Alide_0788 Alicycliphilus denitrificans BC general secretion pathway protein f YP_004125441.1 839539 R 596153 CDS YP_004125442.1 319761505 10102818 complement(840823..841818) 1 NC_014910.1 KEGG: ajs:Ajs_0664 luciferase family protein; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup; luciferase family oxidoreductase 841818 10102818 Alide_0789 Alicycliphilus denitrificans BC luciferase family oxidoreductase YP_004125442.1 840823 R 596153 CDS YP_004125443.1 319761506 10102819 842007..842534 1 NC_014910.1 KEGG: ajs:Ajs_0665 hypothetical protein; hypothetical protein 842534 10102819 Alide_0790 Alicycliphilus denitrificans BC hypothetical protein YP_004125443.1 842007 D 596153 CDS YP_004125444.1 319761507 10102820 complement(842544..843944) 1 NC_014910.1 TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; KEGG: dia:Dtpsy_0645 general secretory pathway protein E; SMART: AAA ATPase; general secretory pathway protein e 843944 10102820 Alide_0791 Alicycliphilus denitrificans BC general secretory pathway protein e YP_004125444.1 842544 R 596153 CDS YP_004125445.1 319761508 10102821 complement(843955..846288) 1 NC_014910.1 KEGG: dia:Dtpsy_0646 general secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein d 846288 10102821 Alide_0792 Alicycliphilus denitrificans BC general secretion pathway protein d YP_004125445.1 843955 R 596153 CDS YP_004125446.1 319761509 10102822 complement(846293..847108) 1 NC_014910.1 KEGG: ajs:Ajs_0668 general secretory pathway N transmembrane protein; general secretory pathway n transmembrane protein 847108 10102822 Alide_0793 Alicycliphilus denitrificans BC general secretory pathway n transmembrane protein YP_004125446.1 846293 R 596153 CDS YP_004125447.1 319761510 10102823 complement(847142..847651) 1 NC_014910.1 PFAM: General secretion pathway M protein; KEGG: ajs:Ajs_0669 hypothetical protein; general secretion pathway m protein 847651 10102823 Alide_0794 Alicycliphilus denitrificans BC general secretion pathway m protein YP_004125447.1 847142 R 596153 CDS YP_004125448.1 319761511 10102824 complement(847648..848880) 1 NC_014910.1 PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L; general secretion pathway l 848880 10102824 Alide_0795 Alicycliphilus denitrificans BC general secretion pathway l YP_004125448.1 847648 R 596153 CDS YP_004125449.1 319761512 10102825 complement(848948..849925) 1 NC_014910.1 KEGG: ajs:Ajs_0671 general secretion pathway protein K; general secretion pathway protein k 849925 10102825 Alide_0796 Alicycliphilus denitrificans BC general secretion pathway protein k YP_004125449.1 848948 R 596153 CDS YP_004125450.1 319761513 10102826 complement(849922..850611) 1 NC_014910.1 KEGG: ajs:Ajs_0672 hypothetical protein; hypothetical protein 850611 10102826 Alide_0797 Alicycliphilus denitrificans BC hypothetical protein YP_004125450.1 849922 R 596153 CDS YP_004125451.1 319761514 10102827 complement(850613..850978) 1 NC_014910.1 KEGG: dia:Dtpsy_0652 general secretion pathway protein I; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; general secretion pathway protein i 850978 10102827 Alide_0798 Alicycliphilus denitrificans BC general secretion pathway protein i YP_004125451.1 850613 R 596153 CDS YP_004125452.1 319761515 10102828 complement(851247..851756) 1 NC_014910.1 KEGG: dia:Dtpsy_0653 general secretion pathway protein H; manually curated; TIGRFAM: general secretion pathway protein H; general secretion pathway protein h 851756 10102828 Alide_0799 Alicycliphilus denitrificans BC general secretion pathway protein h YP_004125452.1 851247 R 596153 CDS YP_004125453.1 319761516 10102829 complement(851784..852191) 1 NC_014910.1 KEGG: aav:Aave_0925 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein g 852191 10102829 Alide_0800 Alicycliphilus denitrificans BC general secretion pathway protein g YP_004125453.1 851784 R 596153 CDS YP_004125454.1 319761517 10102830 852292..852738 1 NC_014910.1 KEGG: dia:Dtpsy_0655 hypothetical protein; hypothetical protein 852738 10102830 Alide_0801 Alicycliphilus denitrificans BC hypothetical protein YP_004125454.1 852292 D 596153 CDS YP_004125455.1 319761518 10102831 complement(852739..853305) 1 NC_014910.1 PFAM: Phosphoglycerate mutase; KEGG: dia:Dtpsy_0656 phosphoglycerate mutase; phosphoglycerate mutase 853305 10102831 Alide_0802 Alicycliphilus denitrificans BC phosphoglycerate mutase YP_004125455.1 852739 R 596153 CDS YP_004125456.1 319761519 10102832 complement(853302..854120) 1 NC_014910.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dia:Dtpsy_0657 cobalamin-5-phosphate synthase CobS; cobalamin-5-phosphate synthase cobs 854120 10102832 Alide_0803 Alicycliphilus denitrificans BC cobalamin-5-phosphate synthase cobs YP_004125456.1 853302 R 596153 CDS YP_004125457.1 319761520 10102833 complement(854183..855748) 1 NC_014910.1 KEGG: dia:Dtpsy_0658 threonine dehydratase; TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Threonine dehydratase domain-containing protein; threonine dehydratase, biosynthetic 855748 10102833 Alide_0804 Alicycliphilus denitrificans BC threonine dehydratase, biosynthetic YP_004125457.1 854183 R 596153 CDS YP_004125458.1 319761521 10102834 856030..856479 1 NC_014910.1 PFAM: OsmC family protein; KEGG: dia:Dtpsy_0659 OsmC family protein; osmc family protein 856479 10102834 Alide_0805 Alicycliphilus denitrificans BC osmc family protein YP_004125458.1 856030 D 596153 CDS YP_004125459.1 319761522 10102835 complement(856490..857107) 1 NC_014910.1 KEGG: dia:Dtpsy_0660 ubiquinone biosynthesis protein; ubiquinone biosynthesis protein 857107 10102835 Alide_0806 Alicycliphilus denitrificans BC ubiquinone biosynthesis protein YP_004125459.1 856490 R 596153 CDS YP_004125460.1 319761523 10102836 857336..858376 1 NC_014910.1 PFAM: porin Gram-negative type; KEGG: aav:Aave_0932 porin; porin 858376 10102836 Alide_0807 Alicycliphilus denitrificans BC porin YP_004125460.1 857336 D 596153 CDS YP_004125461.1 319761524 10102837 858598..859809 1 NC_014910.1 PFAM: porin Gram-negative type; KEGG: dia:Dtpsy_0662 porin gram-negative type; porin 859809 10102837 Alide_0808 Alicycliphilus denitrificans BC porin YP_004125461.1 858598 D 596153 CDS YP_004125462.1 319761525 10102838 860058..861041 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0664 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 861041 10102838 Alide_0809 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125462.1 860058 D 596153 CDS YP_004125463.1 319761526 10102839 861043..862263 1 NC_014910.1 TIGRFAM: amidohydrolase; KEGG: dia:Dtpsy_0665 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 862263 10102839 Alide_0810 Alicycliphilus denitrificans BC amidohydrolase YP_004125463.1 861043 D 596153 CDS YP_004125464.1 319761527 10102840 862341..863252 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0667 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 863252 10102840 Alide_0811 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125464.1 862341 D 596153 CDS YP_004125465.1 319761528 10102841 863259..864233 1 NC_014910.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dia:Dtpsy_0668 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 864233 10102841 Alide_0812 Alicycliphilus denitrificans BC oligopeptide/dipeptide ABC transporter ATPase YP_004125465.1 863259 D 596153 CDS YP_004125466.1 319761529 10102842 864230..865246 1 NC_014910.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dia:Dtpsy_0669 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 865246 10102842 Alide_0813 Alicycliphilus denitrificans BC oligopeptide/dipeptide ABC transporter ATPase YP_004125466.1 864230 D 596153 CDS YP_004125467.1 319761530 10102843 865289..865783 1 NC_014910.1 PFAM: PEBP family protein; KEGG: dia:Dtpsy_0671 PEBP family protein; pebp family protein 865783 10102843 Alide_0814 Alicycliphilus denitrificans BC pebp family protein YP_004125467.1 865289 D 596153 CDS YP_004125468.1 319761531 10102844 complement(865835..866680) 1 NC_014910.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ajs:Ajs_0694 RpiR family transcriptional regulator; helix-turn-helix protein rpir 866680 10102844 Alide_0815 Alicycliphilus denitrificans BC helix-turn-helix protein rpir YP_004125468.1 865835 R 596153 CDS YP_004125469.1 319761532 10102845 866796..867746 1 NC_014910.1 KEGG: dia:Dtpsy_0674 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 867746 10102845 Alide_0816 Alicycliphilus denitrificans BC transaldolase YP_004125469.1 866796 D 596153 CDS YP_004125470.1 319761533 10102846 867743..869338 1 NC_014910.1 KEGG: ajs:Ajs_0697 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase 869338 10102846 Alide_0817 Alicycliphilus denitrificans BC glucose-6-phosphate isomerase YP_004125470.1 867743 D 596153 CDS YP_004125471.1 319761534 10102847 complement(869461..871107) 1 NC_014910.1 KEGG: aav:Aave_0945 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; molecular chaperone GroEL 871107 10102847 Alide_0818 Alicycliphilus denitrificans BC molecular chaperone GroEL YP_004125471.1 869461 R 596153 CDS YP_004125472.1 319761535 10102848 complement(871205..871495) 1 NC_014910.1 PFAM: Chaperonin Cpn10; KEGG: dac:Daci_5660 co-chaperonin GroES; chaperonin cpn10 871495 10102848 Alide_0819 Alicycliphilus denitrificans BC chaperonin cpn10 YP_004125472.1 871205 R 596153 CDS YP_004125473.1 319761536 10102849 complement(871697..872725) 1 NC_014910.1 KEGG: ajs:Ajs_0701 cytidyltransferase-like protein; TIGRFAM: cytidyltransferase-related domain protein; PFAM: NUDIX hydrolase; cytidylyltransferase; cytidyltransferase 872725 10102849 Alide_0820 Alicycliphilus denitrificans BC cytidyltransferase YP_004125473.1 871697 R 596153 CDS YP_004125474.1 319761537 10102850 complement(872739..873920) 1 NC_014910.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: dia:Dtpsy_0683 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; s-adenosylmethionine synthetase 873920 10102850 Alide_0821 Alicycliphilus denitrificans BC s-adenosylmethionine synthetase YP_004125474.1 872739 R 596153 CDS YP_004125475.1 319761538 10102851 874054..874908 1 NC_014910.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0706 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 874908 10102851 Alide_0822 Alicycliphilus denitrificans BC lipid A biosynthesis acyltransferase YP_004125475.1 874054 D 596153 CDS YP_004125476.1 319761539 10102852 874905..875786 1 NC_014910.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0707 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 875786 10102852 Alide_0823 Alicycliphilus denitrificans BC lipid A biosynthesis acyltransferase YP_004125476.1 874905 D 596153 CDS YP_004125477.1 319761540 10102853 complement(875827..876729) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_1352 LysR family transcriptional regulator; LysR family transcriptional regulator 876729 10102853 Alide_0824 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125477.1 875827 R 596153 CDS YP_004125478.1 319761541 10102854 876826..877806 1 NC_014910.1 KEGG: vei:Veis_1351 fis family transcriptional regulator; Fis family transcriptional regulator 877806 10102854 Alide_0825 Alicycliphilus denitrificans BC Fis family transcriptional regulator YP_004125478.1 876826 D 596153 CDS YP_004125479.1 319761542 10102855 877821..878801 1 NC_014910.1 KEGG: cti:RALTA_B1946 conserved hypothetical protein UPF0065; hypothetical protein 878801 10102855 Alide_0826 Alicycliphilus denitrificans BC hypothetical protein YP_004125479.1 877821 D 596153 CDS YP_004125480.1 319761543 10102856 878828..879889 1 NC_014910.1 KEGG: vei:Veis_1349 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 879889 10102856 Alide_0827 Alicycliphilus denitrificans BC 3-isopropylmalate dehydrogenase YP_004125480.1 878828 D 596153 CDS YP_004125481.1 319761544 10102857 879889..880701 1 NC_014910.1 PFAM: amidohydrolase 2; KEGG: bbt:BBta_3003 hypothetical protein; amidohydrolase 880701 10102857 Alide_0828 Alicycliphilus denitrificans BC amidohydrolase YP_004125481.1 879889 D 596153 CDS YP_004125482.1 319761545 10102858 complement(880689..881381) 1 NC_014910.1 KEGG: aav:Aave_0983 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; ribosome biogenesis gtp-binding protein ysxc 881381 10102858 Alide_0829 Alicycliphilus denitrificans BC ribosome biogenesis gtp-binding protein ysxc YP_004125482.1 880689 R 596153 CDS YP_004125483.1 319761546 10102859 881464..882102 1 NC_014910.1 PFAM: cytochrome c class I; KEGG: ajs:Ajs_0710 cytochrome c, class I; cytochrome c class i 882102 10102859 Alide_0830 Alicycliphilus denitrificans BC cytochrome c class i YP_004125483.1 881464 D 596153 CDS YP_004125484.1 319761547 10102860 882231..884429 1 NC_014910.1 KEGG: dia:Dtpsy_0691 ResB family protein; resb family protein 884429 10102860 Alide_0831 Alicycliphilus denitrificans BC resb family protein YP_004125484.1 882231 D 596153 CDS YP_004125485.1 319761548 10102861 884426..885760 1 NC_014910.1 KEGG: ajs:Ajs_0712 cytochrome c assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; cytochrome c-type biogenesis protein ccsb 885760 10102861 Alide_0832 Alicycliphilus denitrificans BC cytochrome c-type biogenesis protein ccsb YP_004125485.1 884426 D 596153 CDS YP_004125486.1 319761549 10102862 885934..886932 1 NC_014910.1 PFAM: oxidoreductase molybdopterin binding; KEGG: dia:Dtpsy_0693 sulfite oxidase subunit YedY; oxidoreductase molybdopterin binding protein 886932 10102862 Alide_0833 Alicycliphilus denitrificans BC oxidoreductase molybdopterin binding protein YP_004125486.1 885934 D 596153 CDS YP_004125487.1 319761550 10102863 886932..887573 1 NC_014910.1 PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: dia:Dtpsy_0694 ferric reductase domain protein transmembrane component; ferric reductase 887573 10102863 Alide_0834 Alicycliphilus denitrificans BC ferric reductase YP_004125487.1 886932 D 596153 CDS YP_004125488.1 319761551 10102864 complement(887659..888462) 1 NC_014910.1 KEGG: dia:Dtpsy_0695 beta-lactamase domain protein; beta-lactamase 888462 10102864 Alide_0835 Alicycliphilus denitrificans BC beta-lactamase YP_004125488.1 887659 R 596153 CDS YP_004125489.1 319761552 10102865 complement(888531..889820) 1 NC_014910.1 KEGG: dia:Dtpsy_0696 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 889820 10102865 Alide_0836 Alicycliphilus denitrificans BC diaminopimelate decarboxylase YP_004125489.1 888531 R 596153 CDS YP_004125490.1 319761553 10102866 complement(889817..890029) 1 NC_014910.1 manually curated; KEGG: ajs:Ajs_0717 hypothetical protein; hypothetical protein 890029 10102866 Alide_0837 Alicycliphilus denitrificans BC hypothetical protein YP_004125490.1 889817 R 596153 CDS YP_004125491.1 319761554 10102867 890042..890371 1 NC_014910.1 KEGG: ajs:Ajs_0728 frataxin family protein; TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; iron donor protein cyay 890371 10102867 Alide_0838 Alicycliphilus denitrificans BC iron donor protein cyay YP_004125491.1 890042 D 596153 CDS YP_004125492.1 319761555 10102868 complement(890378..892693) 1 NC_014910.1 KEGG: dia:Dtpsy_0698 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein, 1a family 892693 10102868 Alide_0839 Alicycliphilus denitrificans BC penicillin-binding protein, 1a family YP_004125492.1 890378 R 596153 CDS YP_004125493.1 319761556 10102869 893020..894090 1 NC_014910.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM; type IV pilus assembly protein pilm 894090 10102869 Alide_0840 Alicycliphilus denitrificans BC type IV pilus assembly protein pilm YP_004125493.1 893020 D 596153 CDS YP_004125494.1 319761557 10102870 894087..894698 1 NC_014910.1 PFAM: Fimbrial assembly family protein; KEGG: ajs:Ajs_0731 fimbrial assembly family protein; fimbrial assembly family protein 894698 10102870 Alide_0841 Alicycliphilus denitrificans BC fimbrial assembly family protein YP_004125494.1 894087 D 596153 CDS YP_004125495.1 319761558 10102871 894695..895378 1 NC_014910.1 KEGG: ajs:Ajs_0732 pilus assembly protein, PilO; pilus assembly protein, pilo 895378 10102871 Alide_0842 Alicycliphilus denitrificans BC pilus assembly protein, pilo YP_004125495.1 894695 D 596153 CDS YP_004125496.1 319761559 10102872 895375..895932 1 NC_014910.1 PFAM: Pilus assembly protein PilP; KEGG: dia:Dtpsy_0702 pilus assembly protein PilP; pilus assembly protein pilp 895932 10102872 Alide_0843 Alicycliphilus denitrificans BC pilus assembly protein pilp YP_004125496.1 895375 D 596153 CDS YP_004125497.1 319761560 10102873 895929..898070 1 NC_014910.1 KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; type IV pilus secretin pilq 898070 10102873 Alide_0844 Alicycliphilus denitrificans BC type IV pilus secretin pilq YP_004125497.1 895929 D 596153 CDS YP_004125498.1 319761561 10102874 898092..899639 1 NC_014910.1 PFAM: Ig family protein; KEGG: eba:ebA2288 hypothetical protein; ig family protein 899639 10102874 Alide_0845 Alicycliphilus denitrificans BC ig family protein YP_004125498.1 898092 D 596153 CDS YP_004125499.1 319761562 10102875 899763..900881 1 NC_014910.1 TIGRFAM: 3-dehydroquinate synthase; KEGG: dia:Dtpsy_0704 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; 3-dehydroquinate synthase 900881 10102875 Alide_0846 Alicycliphilus denitrificans BC 3-dehydroquinate synthase YP_004125499.1 899763 D 596153 CDS YP_004125500.1 319761563 10102876 900939..902111 1 NC_014910.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ajs:Ajs_0736 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase 902111 10102876 Alide_0847 Alicycliphilus denitrificans BC deoxyguanosinetriphosphate triphosphohydrolase YP_004125500.1 900939 D 596153 CDS YP_004125501.1 319761564 10102877 902143..902763 1 NC_014910.1 PFAM: protein of unknown function DUF1415; KEGG: dia:Dtpsy_0706 protein of unknown function DUF1415; hypothetical protein 902763 10102877 Alide_0848 Alicycliphilus denitrificans BC hypothetical protein YP_004125501.1 902143 D 596153 CDS YP_004125502.1 319761565 10102878 902760..903632 1 NC_014910.1 KEGG: dia:Dtpsy_0707 hypothetical protein; hypothetical protein 903632 10102878 Alide_0849 Alicycliphilus denitrificans BC hypothetical protein YP_004125502.1 902760 D 596153 CDS YP_004125503.1 319761566 10102879 complement(903748..905253) 1 NC_014910.1 KEGG: hse:Hsero_3067 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; methylmalonate-semialdehyde dehydrogenase 905253 10102879 Alide_0850 Alicycliphilus denitrificans BC methylmalonate-semialdehyde dehydrogenase YP_004125503.1 903748 R 596153 CDS YP_004125504.1 319761567 10102880 complement(905268..906485) 1 NC_014910.1 KEGG: hse:Hsero_3068 branched-chain amino acid ABC transporter periplasmic protein; branched-chain amino acid abc transporter substrate-binding protein 906485 10102880 Alide_0851 Alicycliphilus denitrificans BC branched-chain amino acid abc transporter substrate-binding protein YP_004125504.1 905268 R 596153 CDS YP_004125505.1 319761568 10102881 906619..907545 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: hse:Hsero_3069 LysR family transcription regulator protein; LysR family transcriptional regulator 907545 10102881 Alide_0852 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125505.1 906619 D 596153 CDS YP_004125506.1 319761569 10102882 907612..908322 1 NC_014910.1 KEGG: vap:Vapar_1151 protein of unknown function DUF1568; hypothetical protein 908322 10102882 Alide_0853 Alicycliphilus denitrificans BC hypothetical protein YP_004125506.1 907612 D 596153 CDS YP_004125507.1 319761570 10102883 908492..913225 1 NC_014910.1 KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase 913225 10102883 Alide_0854 Alicycliphilus denitrificans BC glutamate synthase YP_004125507.1 908492 D 596153 CDS YP_004125508.1 319761571 10102884 913266..914744 1 NC_014910.1 KEGG: dia:Dtpsy_0710 glutamate synthase subunit beta; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase, NADH/nadph, small subunit 914744 10102884 Alide_0855 Alicycliphilus denitrificans BC glutamate synthase, NADH/nadph, small subunit YP_004125508.1 913266 D 596153 CDS YP_004125509.1 319761572 10102885 914949..915746 1 NC_014910.1 KEGG: ajs:Ajs_0743 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; ABC transporter substrate-binding protein 915746 10102885 Alide_0856 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125509.1 914949 D 596153 CDS YP_004125510.1 319761573 10102886 915808..916464 1 NC_014910.1 KEGG: ajs:Ajs_0744 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 916464 10102886 Alide_0857 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004125510.1 915808 D 596153 CDS YP_004125511.1 319761574 10102887 916445..917224 1 NC_014910.1 KEGG: dia:Dtpsy_0713 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 917224 10102887 Alide_0858 Alicycliphilus denitrificans BC ABC transporter YP_004125511.1 916445 D 596153 CDS YP_004125512.1 319761575 10102888 917248..918552 1 NC_014910.1 KEGG: vei:Veis_4017 hypothetical protein; hypothetical protein 918552 10102888 Alide_0859 Alicycliphilus denitrificans BC hypothetical protein YP_004125512.1 917248 D 596153 CDS YP_004125513.1 319761576 10102889 complement(918654..919613) 1 NC_014910.1 KEGG: ajs:Ajs_0746 spermidine synthase; PFAM: Spermine synthase; spermidine synthase 919613 10102889 Alide_0860 Alicycliphilus denitrificans BC spermidine synthase YP_004125513.1 918654 R 596153 CDS YP_004125514.1 319761577 10102890 complement(919613..920023) 1 NC_014910.1 KEGG: dia:Dtpsy_0715 S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; s-adenosylmethionine decarboxylase proenzyme 920023 10102890 Alide_0861 Alicycliphilus denitrificans BC s-adenosylmethionine decarboxylase proenzyme YP_004125514.1 919613 R 596153 CDS YP_004125515.1 319761578 10102891 920390..921238 1 NC_014910.1 KEGG: dia:Dtpsy_0716 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 921238 10102891 Alide_0862 Alicycliphilus denitrificans BC ABC transporter YP_004125515.1 920390 D 596153 CDS YP_004125516.1 319761579 10102892 921235..922017 1 NC_014910.1 PFAM: protein of unknown function DUF140; KEGG: dia:Dtpsy_0717 protein of unknown function DUF140; hypothetical protein 922017 10102892 Alide_0863 Alicycliphilus denitrificans BC hypothetical protein YP_004125516.1 921235 D 596153 CDS YP_004125517.1 319761580 10102893 922052..922540 1 NC_014910.1 PFAM: Mammalian cell entry related domain protein; KEGG: dia:Dtpsy_0718 mammalian cell entry related domain protein; mammalian cell entry related domain-containing protein 922540 10102893 Alide_0864 Alicycliphilus denitrificans BC mammalian cell entry related domain-containing protein YP_004125517.1 922052 D 596153 CDS YP_004125518.1 319761581 10102894 922537..923277 1 NC_014910.1 PFAM: VacJ family lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein; vacj family lipoprotein 923277 10102894 Alide_0865 Alicycliphilus denitrificans BC vacj family lipoprotein YP_004125518.1 922537 D 596153 CDS YP_004125519.1 319761582 10102895 923395..924057 1 NC_014910.1 PFAM: toluene tolerance family protein; KEGG: dia:Dtpsy_0720 toluene tolerance family protein; toluene tolerance family protein 924057 10102895 Alide_0866 Alicycliphilus denitrificans BC toluene tolerance family protein YP_004125519.1 923395 D 596153 CDS YP_004125520.1 319761583 10102896 924075..924347 1 NC_014910.1 KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist stas 924347 10102896 Alide_0867 Alicycliphilus denitrificans BC sulfate transporter/antisigma-factor antagonist stas YP_004125520.1 924075 D 596153 CDS YP_004125521.1 319761584 10102897 924411..925706 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: cps:CPS_0452 sensory box protein; SMART: GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase 925706 10102897 Alide_0868 Alicycliphilus denitrificans BC diguanylate cyclase YP_004125521.1 924411 D 596153 CDS YP_004125522.1 319761585 10102898 925788..926708 1 NC_014910.1 KEGG: dia:Dtpsy_0722 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 926708 10102898 Alide_0869 Alicycliphilus denitrificans BC ABC transporter YP_004125522.1 925788 D 596153 CDS YP_004125523.1 319761586 10102899 926705..927460 1 NC_014910.1 PFAM: ABC transporter; KEGG: aav:Aave_1020 ABC transporter; ABC transporter 927460 10102899 Alide_0870 Alicycliphilus denitrificans BC ABC transporter YP_004125523.1 926705 D 596153 CDS YP_004125524.1 319761587 10102900 927474..927722 1 NC_014910.1 PFAM: BolA family protein; KEGG: dia:Dtpsy_0724 BolA family protein; bola family protein 927722 10102900 Alide_0871 Alicycliphilus denitrificans BC bola family protein YP_004125524.1 927474 D 596153 CDS YP_004125525.1 319761588 10102901 927747..929021 1 NC_014910.1 KEGG: ctt:CtCNB1_0710 UDP-N-acetylglucosamine; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); udp-n-acetylglucosamine 1-carboxyvinyltransferase 929021 10102901 Alide_0872 Alicycliphilus denitrificans BC udp-n-acetylglucosamine 1-carboxyvinyltransferase YP_004125525.1 927747 D 596153 CDS YP_004125526.1 319761589 10102902 929018..929668 1 NC_014910.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: dia:Dtpsy_0726 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase 929668 10102902 Alide_0873 Alicycliphilus denitrificans BC ATP phosphoribosyltransferase YP_004125526.1 929018 D 596153 CDS YP_004125527.1 319761590 10102903 929673..930989 1 NC_014910.1 TIGRFAM: histidinol dehydrogenase; KEGG: aav:Aave_1024 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; histidinol dehydrogenase 930989 10102903 Alide_0874 Alicycliphilus denitrificans BC histidinol dehydrogenase YP_004125527.1 929673 D 596153 CDS YP_004125528.1 319761591 10102904 931108..931386 1 NC_014910.1 KEGG: dac:Daci_5523 hypothetical protein; hypothetical protein 931386 10102904 Alide_0875 Alicycliphilus denitrificans BC hypothetical protein YP_004125528.1 931108 D 596153 CDS YP_004125529.1 319761592 10102905 931383..931835 1 NC_014910.1 KEGG: ctt:CtCNB1_0716 hypothetical protein; hypothetical protein 931835 10102905 Alide_0876 Alicycliphilus denitrificans BC hypothetical protein YP_004125529.1 931383 D 596153 CDS YP_004125530.1 319761593 10102906 931853..932971 1 NC_014910.1 KEGG: dia:Dtpsy_0729 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; histidinol-phosphate aminotransferase 932971 10102906 Alide_0877 Alicycliphilus denitrificans BC histidinol-phosphate aminotransferase YP_004125530.1 931853 D 596153 CDS YP_004125531.1 319761594 10102907 932968..933600 1 NC_014910.1 KEGG: dia:Dtpsy_0730 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 933600 10102907 Alide_0878 Alicycliphilus denitrificans BC imidazoleglycerol-phosphate dehydratase YP_004125531.1 932968 D 596153 CDS YP_004125532.1 319761595 10102908 933651..934319 1 NC_014910.1 KEGG: dia:Dtpsy_0731 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 934319 10102908 Alide_0879 Alicycliphilus denitrificans BC imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_004125532.1 933651 D 596153 CDS YP_004125533.1 319761596 10102909 934372..935115 1 NC_014910.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: ajs:Ajs_0765 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 935115 10102909 Alide_0880 Alicycliphilus denitrificans BC phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_004125533.1 934372 D 596153 CDS YP_004125534.1 319761597 10102910 complement(935122..936318) 1 NC_014910.1 KEGG: ajs:Ajs_0766 hypothetical protein; hypothetical protein 936318 10102910 Alide_0881 Alicycliphilus denitrificans BC hypothetical protein YP_004125534.1 935122 R 596153 CDS YP_004125535.1 319761598 10102911 complement(936386..937759) 1 NC_014910.1 KEGG: ajs:Ajs_0767 transmembrane protein; transmembrane protein 937759 10102911 Alide_0882 Alicycliphilus denitrificans BC transmembrane protein YP_004125535.1 936386 R 596153 CDS YP_004125536.1 319761599 10102912 complement(937759..939291) 1 NC_014910.1 PFAM: glycosyl transferase group 1; KEGG: ajs:Ajs_0768 glycosyl transferase, group 1; group 1 glycosyl transferase 939291 10102912 Alide_0883 Alicycliphilus denitrificans BC group 1 glycosyl transferase YP_004125536.1 937759 R 596153 CDS YP_004125537.1 319761600 10102913 complement(939288..940289) 1 NC_014910.1 KEGG: ajs:Ajs_0769 transmembrane protein; transmembrane protein 940289 10102913 Alide_0884 Alicycliphilus denitrificans BC transmembrane protein YP_004125537.1 939288 R 596153 CDS YP_004125538.1 319761601 10102914 complement(940282..941676) 1 NC_014910.1 KEGG: ajs:Ajs_0770 transmembrane protein; transmembrane protein 941676 10102914 Alide_0885 Alicycliphilus denitrificans BC transmembrane protein YP_004125538.1 940282 R 596153 CDS YP_004125539.1 319761602 10102915 complement(941684..942238) 1 NC_014910.1 KEGG: ajs:Ajs_0771 lipoprotein; lipoprotein 942238 10102915 Alide_0886 Alicycliphilus denitrificans BC lipoprotein YP_004125539.1 941684 R 596153 CDS YP_004125540.1 319761603 10102916 complement(942260..946063) 1 NC_014910.1 KEGG: ajs:Ajs_0772 TPR repeat-containing protein; tpr repeat-containing protein 946063 10102916 Alide_0887 Alicycliphilus denitrificans BC tpr repeat-containing protein YP_004125540.1 942260 R 596153 CDS YP_004125541.1 319761604 10102917 complement(946110..948941) 1 NC_014910.1 PFAM: TM1410 hypothetical protein-related protein; polysaccharide deacetylase; KEGG: ajs:Ajs_0773 polysaccharide deacetylase; hypothetical protein 948941 10102917 Alide_0888 Alicycliphilus denitrificans BC hypothetical protein YP_004125541.1 946110 R 596153 CDS YP_004125542.1 319761605 10102918 949114..950130 1 NC_014910.1 KEGG: ajs:Ajs_0774 UDP-galactose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; udp-glucose 4-epimerase 950130 10102918 Alide_0889 Alicycliphilus denitrificans BC udp-glucose 4-epimerase YP_004125542.1 949114 D 596153 CDS YP_004125543.1 319761606 10102919 950171..950950 1 NC_014910.1 KEGG: dia:Dtpsy_0738 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; Imidazole glycerol phosphate synthase cyclase subunit 950950 10102919 Alide_0890 Alicycliphilus denitrificans BC Imidazole glycerol phosphate synthase cyclase subunit YP_004125543.1 950171 D 596153 CDS YP_004125544.1 319761607 10102920 951057..951446 1 NC_014910.1 KEGG: aav:Aave_1048 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-amp cyclohydrolase 951446 10102920 Alide_0891 Alicycliphilus denitrificans BC phosphoribosyl-amp cyclohydrolase YP_004125544.1 951057 D 596153 CDS YP_004125545.1 319761608 10102921 951451..951828 1 NC_014910.1 KEGG: dia:Dtpsy_0740 phosphoribosyl-ATP pyrophosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; phosphoribosyl-ATP diphosphatase 951828 10102921 Alide_0892 Alicycliphilus denitrificans BC phosphoribosyl-ATP diphosphatase YP_004125545.1 951451 D 596153 CDS YP_004125546.1 319761609 10102922 951825..952211 1 NC_014910.1 KEGG: dia:Dtpsy_0741 transmembrane protein; transmembrane protein 952211 10102922 Alide_0893 Alicycliphilus denitrificans BC transmembrane protein YP_004125546.1 951825 D 596153 CDS YP_004125547.1 319761610 10102923 952204..953232 1 NC_014910.1 PFAM: Patatin; KEGG: ajs:Ajs_0779 patatin; patatin 953232 10102923 Alide_0894 Alicycliphilus denitrificans BC patatin YP_004125547.1 952204 D 596153 CDS YP_004125548.1 319761611 10102924 953271..953627 1 NC_014910.1 PFAM: histidine triad (HIT) protein; KEGG: dia:Dtpsy_0743 histidine triad (HIT) protein; histidine triad (hit) protein 953627 10102924 Alide_0895 Alicycliphilus denitrificans BC histidine triad (hit) protein YP_004125548.1 953271 D 596153 CDS YP_004125549.1 319761612 10102925 953728..953976 1 NC_014910.1 KEGG: ajs:Ajs_0781 twin arginine translocase protein A; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, tata/e family subunit 953976 10102925 Alide_0896 Alicycliphilus denitrificans BC twin-arginine translocation protein, tata/e family subunit YP_004125549.1 953728 D 596153 CDS YP_004125550.1 319761613 10102926 954002..954481 1 NC_014910.1 KEGG: dia:Dtpsy_0745 sec-independent translocase; TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, tatb subunit 954481 10102926 Alide_0897 Alicycliphilus denitrificans BC twin-arginine translocation protein, tatb subunit YP_004125550.1 954002 D 596153 CDS YP_004125551.1 319761614 10102927 954547..955335 1 NC_014910.1 KEGG: dia:Dtpsy_0746 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; sec-independent protein translocase, tatc subunit 955335 10102927 Alide_0898 Alicycliphilus denitrificans BC sec-independent protein translocase, tatc subunit YP_004125551.1 954547 D 596153 CDS YP_004125552.1 319761615 10102928 complement(955409..956548) 1 NC_014910.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; htra2 peptidase 956548 10102928 Alide_0899 Alicycliphilus denitrificans BC htra2 peptidase YP_004125552.1 955409 R 596153 CDS YP_004125553.1 319761616 10102929 956639..957391 1 NC_014910.1 PFAM: protein of unknown function DUF34; KEGG: dia:Dtpsy_0749 protein of unknown function DUF34; hypothetical protein 957391 10102929 Alide_0900 Alicycliphilus denitrificans BC hypothetical protein YP_004125553.1 956639 D 596153 CDS YP_004125554.1 319761617 10102930 957454..958506 1 NC_014910.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 958506 10102930 Alide_0901 Alicycliphilus denitrificans BC 4-hydroxythreonine-4-phosphate dehydrogenase YP_004125554.1 957454 D 596153 CDS YP_004125555.1 319761618 10102931 complement(958573..959001) 1 NC_014910.1 KEGG: dac:Daci_5504 large-conductance mechanosensitive channel; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein 959001 10102931 Alide_0902 Alicycliphilus denitrificans BC large conductance mechanosensitive channel protein YP_004125555.1 958573 R 596153 CDS YP_004125556.1 319761619 10102932 959127..959726 1 NC_014910.1 TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit 959726 10102932 Alide_0903 Alicycliphilus denitrificans BC ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_004125556.1 959127 D 596153 CDS YP_004125557.1 319761620 10102933 959742..961163 1 NC_014910.1 PFAM: Cytochrome b/b6 domain; KEGG: dia:Dtpsy_0753 cytochrome b/b6 domain protein; cytochrome b/b6 domain-containing protein 961163 10102933 Alide_0904 Alicycliphilus denitrificans BC cytochrome b/b6 domain-containing protein YP_004125557.1 959742 D 596153 CDS YP_004125558.1 319761621 10102934 961180..961935 1 NC_014910.1 KEGG: ajs:Ajs_0791 cytochrome c1; manually curated; PFAM: cytochrome c1; cytochrome c1 961935 10102934 Alide_0905 Alicycliphilus denitrificans BC cytochrome c1 YP_004125558.1 961180 D 596153 CDS YP_004125559.1 319761622 10102935 962034..962645 1 NC_014910.1 PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_0755 glutathione S-transferase domain protein; glutathione s-transferase domain-containing protein 962645 10102935 Alide_0906 Alicycliphilus denitrificans BC glutathione s-transferase domain-containing protein YP_004125559.1 962034 D 596153 CDS YP_004125560.1 319761623 10102936 962678..963202 1 NC_014910.1 PFAM: Stringent starvation protein B; KEGG: dia:Dtpsy_0756 stringent starvation protein B; stringent starvation protein b 963202 10102936 Alide_0907 Alicycliphilus denitrificans BC stringent starvation protein b YP_004125560.1 962678 D 596153 CDS YP_004125561.1 319761624 10102938 complement(963385..963684) 1 NC_014910.1 KEGG: dia:Dtpsy_0757 hypothetical protein; hypothetical protein 963684 10102938 Alide_0908 Alicycliphilus denitrificans BC hypothetical protein YP_004125561.1 963385 R 596153 CDS YP_004125562.1 319761625 10102939 963926..966685 1 NC_014910.1 KEGG: dia:Dtpsy_0759 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein; preprotein translocase, seca subunit 966685 10102939 Alide_0909 Alicycliphilus denitrificans BC preprotein translocase, seca subunit YP_004125562.1 963926 D 596153 CDS YP_004125563.1 319761626 10102940 966761..967990 1 NC_014910.1 TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: ajs:Ajs_0797 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 967990 10102940 Alide_0910 Alicycliphilus denitrificans BC bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_004125563.1 966761 D 596153 CDS YP_004125564.1 319761627 10102941 968045..968917 1 NC_014910.1 PFAM: protein of unknown function DUF815; KEGG: dia:Dtpsy_0761 protein of unknown function DUF815; hypothetical protein 968917 10102941 Alide_0911 Alicycliphilus denitrificans BC hypothetical protein YP_004125564.1 968045 D 596153 CDS YP_004125565.1 319761628 10102942 968914..969339 1 NC_014910.1 PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_0762 NUDIX hydrolase; nudix hydrolase 969339 10102942 Alide_0912 Alicycliphilus denitrificans BC nudix hydrolase YP_004125565.1 968914 D 596153 CDS YP_004125566.1 319761629 10102943 complement(969402..969608) 1 NC_014910.1 PFAM: protein of unknown function DUF329; KEGG: dia:Dtpsy_0763 protein of unknown function DUF329; hypothetical protein 969608 10102943 Alide_0913 Alicycliphilus denitrificans BC hypothetical protein YP_004125566.1 969402 R 596153 CDS YP_004125567.1 319761630 10102944 complement(969610..970365) 1 NC_014910.1 PFAM: protein of unknown function DUF1342; KEGG: dia:Dtpsy_0764 hypothetical protein; hypothetical protein 970365 10102944 Alide_0914 Alicycliphilus denitrificans BC hypothetical protein YP_004125567.1 969610 R 596153 CDS YP_004125568.1 319761631 10102945 complement(970448..971062) 1 NC_014910.1 TIGRFAM: dephospho-CoA kinase; KEGG: ajs:Ajs_0802 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 971062 10102945 Alide_0915 Alicycliphilus denitrificans BC dephospho-CoA kinase YP_004125568.1 970448 R 596153 CDS YP_004125569.1 319761632 10102946 complement(971083..971961) 1 NC_014910.1 KEGG: dia:Dtpsy_0766 prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; prepilin peptidase 971961 10102946 Alide_0916 Alicycliphilus denitrificans BC prepilin peptidase YP_004125569.1 971083 R 596153 CDS YP_004125570.1 319761633 10102947 complement(971961..973178) 1 NC_014910.1 PFAM: Type II secretion system F domain; KEGG: ajs:Ajs_0804 type II secretion system protein; type II secretion system f domain-containing protein 973178 10102947 Alide_0917 Alicycliphilus denitrificans BC type II secretion system f domain-containing protein YP_004125570.1 971961 R 596153 CDS YP_004125571.1 319761634 10102948 complement(973200..974939) 1 NC_014910.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: ajs:Ajs_0805 type IV-A pilus assembly ATPase PilB; SMART: AAA ATPase; type IV-a pilus assembly atpase pilb 974939 10102948 Alide_0918 Alicycliphilus denitrificans BC type IV-a pilus assembly atpase pilb YP_004125571.1 973200 R 596153 CDS YP_004125572.1 319761635 10102949 975890..977584 1 NC_014910.1 KEGG: pca:Pcar_1822 DNA primase; hypothetical protein 977584 10102949 Alide_0919 Alicycliphilus denitrificans BC hypothetical protein YP_004125572.1 975890 D 596153 CDS YP_004125573.1 319761636 10102950 complement(977965..978924) 1 NC_014910.1 KEGG: lch:Lcho_1774 hypothetical protein; hypothetical protein 978924 10102950 Alide_0920 Alicycliphilus denitrificans BC hypothetical protein YP_004125573.1 977965 R 596153 CDS YP_004125574.1 319761637 10102951 complement(979080..979994) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 979994 10102951 Alide_0921 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004125574.1 979080 R 596153 CDS YP_004125575.1 319761638 10102952 complement(979991..980314) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 980314 10102952 Alide_0922 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004125575.1 979991 R 596153 CDS YP_004125576.1 319761639 10102953 complement(980568..980942) 1 NC_014910.1 KEGG: rpf:Rpic12D_2703 DNA binding domain protein, excisionase family; hypothetical protein 980942 10102953 Alide_0923 Alicycliphilus denitrificans BC hypothetical protein YP_004125576.1 980568 R 596153 CDS YP_004125577.1 319761640 10102954 complement(981016..982605) 1 NC_014910.1 PFAM: integrase family protein; KEGG: rpf:Rpic12D_2659 integrase family protein; integrase family protein 982605 10102954 Alide_0924 Alicycliphilus denitrificans BC integrase family protein YP_004125577.1 981016 R 596153 CDS YP_004125578.1 319761641 10102956 complement(982877..983926) 1 NC_014910.1 PFAM: Polyprenyl synthetase; KEGG: ajs:Ajs_0840 dimethylallyltranstransferase; polyprenyl synthetase 983926 10102956 Alide_0925 Alicycliphilus denitrificans BC polyprenyl synthetase YP_004125578.1 982877 R 596153 CDS YP_004125579.1 319761642 10102957 984033..984344 1 NC_014910.1 KEGG: ajs:Ajs_0841 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; 50S ribosomal protein L21 984344 10102957 Alide_0926 Alicycliphilus denitrificans BC 50S ribosomal protein L21 YP_004125579.1 984033 D 596153 CDS YP_004125580.1 319761643 10102958 984360..984617 1 NC_014910.1 KEGG: dia:Dtpsy_0771 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; 50S ribosomal protein L27 984617 10102958 Alide_0927 Alicycliphilus denitrificans BC 50S ribosomal protein L27 YP_004125580.1 984360 D 596153 CDS YP_004125581.1 319761644 10102959 984743..985816 1 NC_014910.1 KEGG: ajs:Ajs_0843 GTPase ObgE; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; gtp-binding protein obg/cgta 985816 10102959 Alide_0928 Alicycliphilus denitrificans BC gtp-binding protein obg/cgta YP_004125581.1 984743 D 596153 CDS YP_004125582.1 319761645 10102960 985881..987020 1 NC_014910.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: dia:Dtpsy_0773 gamma-glutamyl kinase; SMART: PUA domain containing protein; glutamate 5-kinase 987020 10102960 Alide_0929 Alicycliphilus denitrificans BC glutamate 5-kinase YP_004125582.1 985881 D 596153 CDS YP_004125583.1 319761646 10102961 complement(987044..987718) 1 NC_014910.1 PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_0774 dinucleoside polyphosphate hydrolase; nudix hydrolase 987718 10102961 Alide_0930 Alicycliphilus denitrificans BC nudix hydrolase YP_004125583.1 987044 R 596153 CDS YP_004125584.1 319761647 10102962 987820..989565 1 NC_014910.1 KEGG: dia:Dtpsy_0775 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; prolyl-tRNA synthetase 989565 10102962 Alide_0931 Alicycliphilus denitrificans BC prolyl-tRNA synthetase YP_004125584.1 987820 D 596153 CDS YP_004125585.1 319761648 10102963 989562..990206 1 NC_014910.1 PFAM: Lytic transglycosylase catalytic; KEGG: ajs:Ajs_0847 lytic transglycosylase, catalytic; lytic transglycosylase 990206 10102963 Alide_0932 Alicycliphilus denitrificans BC lytic transglycosylase YP_004125585.1 989562 D 596153 CDS YP_004125586.1 319761649 10102964 complement(990182..991516) 1 NC_014910.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: dia:Dtpsy_0777 protein of unknown function DUF21; hypothetical protein 991516 10102964 Alide_0933 Alicycliphilus denitrificans BC hypothetical protein YP_004125586.1 990182 R 596153 CDS YP_004125587.1 319761650 10102965 complement(991560..992567) 1 NC_014910.1 KEGG: aav:Aave_3667 ATPase central domain-containing protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; ATPase AAA 992567 10102965 Alide_0934 Alicycliphilus denitrificans BC ATPase AAA YP_004125587.1 991560 R 596153 CDS YP_004125588.1 319761651 10102966 complement(992708..993040) 1 NC_014910.1 KEGG: dia:Dtpsy_0778 glutaredoxin-like protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; glutaredoxin-like protein 993040 10102966 Alide_0935 Alicycliphilus denitrificans BC glutaredoxin-like protein YP_004125588.1 992708 R 596153 CDS YP_004125589.1 319761652 10102967 complement(993097..993942) 1 NC_014910.1 KEGG: ajs:Ajs_0850 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-n5) methyltransferase, release factor-specific 993942 10102967 Alide_0936 Alicycliphilus denitrificans BC protein-(glutamine-n5) methyltransferase, release factor-specific YP_004125589.1 993097 R 596153 CDS YP_004125590.1 319761653 10102968 complement(993985..995067) 1 NC_014910.1 KEGG: ajs:Ajs_0851 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 1 995067 10102968 Alide_0937 Alicycliphilus denitrificans BC peptide chain release factor 1 YP_004125590.1 993985 R 596153 CDS YP_004125591.1 319761654 10102969 complement(995168..996481) 1 NC_014910.1 KEGG: dia:Dtpsy_0781 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase 996481 10102969 Alide_0938 Alicycliphilus denitrificans BC glutamyl-tRNA reductase YP_004125591.1 995168 R 596153 CDS YP_004125592.1 319761655 10102970 996556..996831 1 NC_014910.1 KEGG: dia:Dtpsy_0782 hypothetical protein; hypothetical protein 996831 10102970 Alide_0939 Alicycliphilus denitrificans BC hypothetical protein YP_004125592.1 996556 D 596153 CDS YP_004125593.1 319761656 10102971 complement(996948..997841) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0783 transcriptional regulator, LysR family; LysR family transcriptional regulator 997841 10102971 Alide_0940 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125593.1 996948 R 596153 CDS YP_004125594.1 319761657 10102972 997967..998950 1 NC_014910.1 KEGG: ajs:Ajs_0855 hypothetical protein; hypothetical protein 998950 10102972 Alide_0941 Alicycliphilus denitrificans BC hypothetical protein YP_004125594.1 997967 D 596153 CDS YP_004125595.1 319761658 10102973 998950..999852 1 NC_014910.1 PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase; n-formylglutamate amidohydrolase 999852 10102973 Alide_0942 Alicycliphilus denitrificans BC n-formylglutamate amidohydrolase YP_004125595.1 998950 D 596153 CDS YP_004125596.1 319761659 10102974 complement(999896..1002328) 1 NC_014910.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel; mscs mechanosensitive ion channel 1002328 10102974 Alide_0943 Alicycliphilus denitrificans BC mscs mechanosensitive ion channel YP_004125596.1 999896 R 596153 CDS YP_004125597.1 319761660 10102975 complement(1002357..1003106) 1 NC_014910.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dia:Dtpsy_0787 glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 1003106 10102975 Alide_0944 Alicycliphilus denitrificans BC glycerophosphoryl diester phosphodiesterase YP_004125597.1 1002357 R 596153 CDS YP_004125598.1 319761661 10102976 complement(1003113..1004120) 1 NC_014910.1 KEGG: ctt:CtCNB1_0786 sn-glycerol-3-phosphate transport ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 1004120 10102976 Alide_0945 Alicycliphilus denitrificans BC ABC transporter YP_004125598.1 1003113 R 596153 CDS YP_004125599.1 319761662 10102977 complement(1004181..1005029) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0789 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1005029 10102977 Alide_0946 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125599.1 1004181 R 596153 CDS YP_004125600.1 319761663 10102978 complement(1005037..1005918) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ctt:CtCNB1_0788 sn-glycerol-3-phosphate transport systempermease protein UgpA; binding-protein-dependent transport system inner membrane protein 1005918 10102978 Alide_0947 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125600.1 1005037 R 596153 CDS YP_004125601.1 319761664 10102979 complement(1005989..1007302) 1 NC_014910.1 PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_0862 extracellular solute-binding protein; ABC transporter substrate-binding protein 1007302 10102979 Alide_0948 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125601.1 1005989 R 596153 CDS YP_004125602.1 319761665 10102980 1007634..1008863 1 NC_014910.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: ajs:Ajs_0863 D-3-phosphoglycerate dehydrogenase; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 1008863 10102980 Alide_0949 Alicycliphilus denitrificans BC d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein YP_004125602.1 1007634 D 596153 CDS YP_004125603.1 319761666 10102981 1008985..1012905 1 NC_014910.1 PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dia:Dtpsy_0793 FAD linked oxidase domain protein; fad linked oxidase domain-containing protein 1012905 10102981 Alide_0950 Alicycliphilus denitrificans BC fad linked oxidase domain-containing protein YP_004125603.1 1008985 D 596153 CDS YP_004125604.1 319761667 10102982 1012902..1013354 1 NC_014910.1 PFAM: histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein; histidine triad (hit) protein 1013354 10102982 Alide_0951 Alicycliphilus denitrificans BC histidine triad (hit) protein YP_004125604.1 1012902 D 596153 CDS YP_004125605.1 319761668 10102983 1013431..1013850 1 NC_014910.1 KEGG: dia:Dtpsy_0795 protein of unknown function DUF971; hypothetical protein 1013850 10102983 Alide_0952 Alicycliphilus denitrificans BC hypothetical protein YP_004125605.1 1013431 D 596153 CDS YP_004125606.1 319761669 10102984 1013928..1014659 1 NC_014910.1 KEGG: dia:Dtpsy_0796 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 1014659 10102984 Alide_0953 Alicycliphilus denitrificans BC ubiquinone/menaquinone biosynthesis methyltransferase YP_004125606.1 1013928 D 596153 CDS YP_004125607.1 319761670 10102985 1014701..1015699 1 NC_014910.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: dia:Dtpsy_0797 import inner membrane translocase subunit Tim44; import inner membrane translocase subunit tim44 1015699 10102985 Alide_0954 Alicycliphilus denitrificans BC import inner membrane translocase subunit tim44 YP_004125607.1 1014701 D 596153 CDS YP_004125608.1 319761671 10102986 1015774..1016334 1 NC_014910.1 KEGG: dia:Dtpsy_0798 hypothetical protein; hypothetical protein 1016334 10102986 Alide_0955 Alicycliphilus denitrificans BC hypothetical protein YP_004125608.1 1015774 D 596153 CDS YP_004125609.1 319761672 10102987 1016331..1017896 1 NC_014910.1 KEGG: dia:Dtpsy_0799 ubiquinone biosynthesis protein UbiB; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain-containing protein; 2-polyprenylphenol 6-hydroxylase 1017896 10102987 Alide_0956 Alicycliphilus denitrificans BC 2-polyprenylphenol 6-hydroxylase YP_004125609.1 1016331 D 596153 CDS YP_004125610.1 319761673 10102988 1017948..1019399 1 NC_014910.1 PFAM: Na+/solute symporter; KEGG: dia:Dtpsy_0800 Na+/solute symporter; Na+/solute symporter 1019399 10102988 Alide_0957 Alicycliphilus denitrificans BC Na+/solute symporter YP_004125610.1 1017948 D 596153 CDS YP_004125611.1 319761674 10102989 1019462..1019743 1 NC_014910.1 KEGG: dia:Dtpsy_0801 regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; regulatory protein, fmdb family 1019743 10102989 Alide_0958 Alicycliphilus denitrificans BC regulatory protein, fmdb family YP_004125611.1 1019462 D 596153 CDS YP_004125612.1 319761675 10102990 1019757..1020380 1 NC_014910.1 PFAM: protein of unknown function DUF502; KEGG: dia:Dtpsy_0802 protein of unknown function DUF502; hypothetical protein 1020380 10102990 Alide_0959 Alicycliphilus denitrificans BC hypothetical protein YP_004125612.1 1019757 D 596153 CDS YP_004125613.1 319761676 10102991 1020481..1022280 1 NC_014910.1 KEGG: dia:Dtpsy_0803 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; aspartyl-tRNA synthetase 1022280 10102991 Alide_0960 Alicycliphilus denitrificans BC aspartyl-tRNA synthetase YP_004125613.1 1020481 D 596153 CDS YP_004125614.1 319761677 10102992 1022342..1022788 1 NC_014910.1 PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_0805 NUDIX hydrolase; nudix hydrolase 1022788 10102992 Alide_0961 Alicycliphilus denitrificans BC nudix hydrolase YP_004125614.1 1022342 D 596153 CDS YP_004125615.1 319761678 10102993 1022791..1023552 1 NC_014910.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dia:Dtpsy_0806 endonuclease/exonuclease/phosphatase; hypothetical protein 1023552 10102993 Alide_0962 Alicycliphilus denitrificans BC hypothetical protein YP_004125615.1 1022791 D 596153 CDS YP_004125616.1 319761679 10102994 1023695..1024924 1 NC_014910.1 KEGG: dia:Dtpsy_0807 phospholipase D/transphosphatidylase; phospholipase d/transphosphatidylase 1024924 10102994 Alide_0963 Alicycliphilus denitrificans BC phospholipase d/transphosphatidylase YP_004125616.1 1023695 D 596153 CDS YP_004125617.1 319761680 10102995 1025029..1025754 1 NC_014910.1 KEGG: dia:Dtpsy_0808 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; GTP cyclohydrolase I 1025754 10102995 Alide_0964 Alicycliphilus denitrificans BC GTP cyclohydrolase I YP_004125617.1 1025029 D 596153 CDS YP_004125618.1 319761681 10102996 1025756..1026178 1 NC_014910.1 PFAM: BLUF domain protein; KEGG: dia:Dtpsy_0809 BLUF domain protein; bluf domain-containing protein 1026178 10102996 Alide_0965 Alicycliphilus denitrificans BC bluf domain-containing protein YP_004125618.1 1025756 D 596153 CDS YP_004125619.1 319761682 10102997 1026400..1027281 1 NC_014910.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dia:Dtpsy_0810 protein of unknown function DUF6 transmembrane; hypothetical protein 1027281 10102997 Alide_0966 Alicycliphilus denitrificans BC hypothetical protein YP_004125619.1 1026400 D 596153 CDS YP_004125620.1 319761683 10102998 1027311..1029131 1 NC_014910.1 KEGG: dar:Daro_2490 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 1029131 10102998 Alide_0967 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004125620.1 1027311 D 596153 CDS YP_004125621.1 319761684 10102999 1029128..1029757 1 NC_014910.1 KEGG: dar:Daro_2491 LuxR response regulator receiver; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver 1029757 10102999 Alide_0968 Alicycliphilus denitrificans BC response regulator receiver YP_004125621.1 1029128 D 596153 CDS YP_004125622.1 319761685 10103000 complement(1029866..1030876) 1 NC_014910.1 PFAM: cytochrome c class I; KEGG: azo:azo2669 cytochrome c family protein; cytochrome c class i 1030876 10103000 Alide_0969 Alicycliphilus denitrificans BC cytochrome c class i YP_004125622.1 1029866 R 596153 CDS YP_004125623.1 319761686 10103001 1031012..1031869 1 NC_014910.1 KEGG: aav:Aave_3628 hypothetical protein; hypothetical protein 1031869 10103001 Alide_0970 Alicycliphilus denitrificans BC hypothetical protein YP_004125623.1 1031012 D 596153 CDS YP_004125624.1 319761687 10103002 complement(1032021..1032632) 1 NC_014910.1 KEGG: dia:Dtpsy_0813 hypothetical protein; hypothetical protein 1032632 10103002 Alide_0971 Alicycliphilus denitrificans BC hypothetical protein YP_004125624.1 1032021 R 596153 CDS YP_004125625.1 319761688 10103003 1032732..1033388 1 NC_014910.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0885 lysine exporter protein LysE/YggA; lysine exporter protein (lyse/ygga) 1033388 10103003 Alide_0972 Alicycliphilus denitrificans BC lysine exporter protein (lyse/ygga) YP_004125625.1 1032732 D 596153 CDS YP_004125626.1 319761689 10103004 complement(1033449..1034855) 1 NC_014910.1 PFAM: Amidase; KEGG: dia:Dtpsy_0815 amidase; amidase 1034855 10103004 Alide_0973 Alicycliphilus denitrificans BC amidase YP_004125626.1 1033449 R 596153 CDS YP_004125627.1 319761690 10103005 complement(1034852..1036342) 1 NC_014910.1 PFAM: extracellular solute-binding protein family 5; KEGG: dia:Dtpsy_0816 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein 1036342 10103005 Alide_0974 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125627.1 1034852 R 596153 CDS YP_004125628.1 319761691 10103006 complement(1036448..1037314) 1 NC_014910.1 KEGG: dia:Dtpsy_0817 ABC transporter related; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; ABC transporter 1037314 10103006 Alide_0975 Alicycliphilus denitrificans BC ABC transporter YP_004125628.1 1036448 R 596153 CDS YP_004125629.1 319761692 10103007 complement(1037311..1038285) 1 NC_014910.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dia:Dtpsy_0818 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1038285 10103007 Alide_0976 Alicycliphilus denitrificans BC oligopeptide/dipeptide ABC transporter ATPase YP_004125629.1 1037311 R 596153 CDS YP_004125630.1 319761693 10103008 complement(1038559..1039422) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0819 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1039422 10103008 Alide_0977 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125630.1 1038559 R 596153 CDS YP_004125631.1 319761694 10103009 complement(1039419..1040381) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0820 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1040381 10103009 Alide_0978 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125631.1 1039419 R 596153 CDS YP_004125632.1 319761695 10103010 1040526..1040783 1 NC_014910.1 KEGG: dia:Dtpsy_0821 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1040783 10103010 Alide_0979 Alicycliphilus denitrificans BC 4Fe-4S ferredoxin YP_004125632.1 1040526 D 596153 CDS YP_004125633.1 319761696 10103011 complement(1040845..1041474) 1 NC_014910.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: dia:Dtpsy_0822 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1041474 10103011 Alide_0980 Alicycliphilus denitrificans BC peptidyl-tRNA hydrolase YP_004125633.1 1040845 R 596153 CDS YP_004125634.1 319761697 10103012 complement(1041584..1042210) 1 NC_014910.1 KEGG: dia:Dtpsy_0823 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like; ribosomal 5S rRNA e-loop binding protein ctc/l25/tl5 1042210 10103012 Alide_0981 Alicycliphilus denitrificans BC ribosomal 5S rRNA e-loop binding protein ctc/l25/tl5 YP_004125634.1 1041584 R 596153 CDS YP_004125635.1 319761698 10103013 complement(1042312..1043271) 1 NC_014910.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: dia:Dtpsy_0824 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 1043271 10103013 Alide_0982 Alicycliphilus denitrificans BC ribose-phosphate pyrophosphokinase YP_004125635.1 1042312 R 596153 CDS YP_004125636.1 319761699 10103015 complement(1043491..1044357) 1 NC_014910.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: ajs:Ajs_0896 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1044357 10103015 Alide_0983 Alicycliphilus denitrificans BC 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_004125636.1 1043491 R 596153 CDS YP_004125637.1 319761700 10103016 complement(1044362..1044859) 1 NC_014910.1 PFAM: outer membrane lipoprotein LolB; KEGG: dia:Dtpsy_0826 lipoprotein; molecular chaperone LolB 1044859 10103016 Alide_0984 Alicycliphilus denitrificans BC molecular chaperone LolB YP_004125637.1 1044362 R 596153 CDS YP_004125638.1 319761701 10103017 complement(1044856..1046637) 1 NC_014910.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: ajs:Ajs_0898 TPR repeat-containing protein; tetratricopeptide tpr_1 repeat-containing protein 1046637 10103017 Alide_0985 Alicycliphilus denitrificans BC tetratricopeptide tpr_1 repeat-containing protein YP_004125638.1 1044856 R 596153 CDS YP_004125639.1 319761702 10103018 1046667..1047482 1 NC_014910.1 TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: ajs:Ajs_0899 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 1047482 10103018 Alide_0986 Alicycliphilus denitrificans BC formamidopyrimidine-DNA glycosylase YP_004125639.1 1046667 D 596153 CDS YP_004125640.1 319761703 10103019 1047552..1049537 1 NC_014910.1 manually curated; KEGG: dia:Dtpsy_0829 hypothetical protein; hypothetical protein 1049537 10103019 Alide_0987 Alicycliphilus denitrificans BC hypothetical protein YP_004125640.1 1047552 D 596153 CDS YP_004125641.1 319761704 10103020 1049534..1050592 1 NC_014910.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: dia:Dtpsy_0830 A/G-specific adenine glycosylase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; A/G-specific adenine glycosylase 1050592 10103020 Alide_0988 Alicycliphilus denitrificans BC A/G-specific adenine glycosylase YP_004125641.1 1049534 D 596153 CDS YP_004125642.1 319761705 10103021 complement(1050706..1051569) 1 NC_014910.1 KEGG: dia:Dtpsy_0831 hypothetical protein; hypothetical protein 1051569 10103021 Alide_0989 Alicycliphilus denitrificans BC hypothetical protein YP_004125642.1 1050706 R 596153 CDS YP_004125643.1 319761706 10103022 complement(1051575..1053248) 1 NC_014910.1 KEGG: ajs:Ajs_0903 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; DNA repair protein recn 1053248 10103022 Alide_0990 Alicycliphilus denitrificans BC DNA repair protein recn YP_004125643.1 1051575 R 596153 CDS YP_004125644.1 319761707 10103023 complement(1053251..1054147) 1 NC_014910.1 PFAM: ATP-NAD/AcoX kinase; KEGG: dia:Dtpsy_0833 NAD(+)/NADH kinase family protein; ATP-nad/acox kinase 1054147 10103023 Alide_0991 Alicycliphilus denitrificans BC ATP-nad/acox kinase YP_004125644.1 1053251 R 596153 CDS YP_004125645.1 319761708 10103024 1054176..1055180 1 NC_014910.1 KEGG: dia:Dtpsy_0847 heat-inducible transcription repressor; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like; heat-inducible transcription repressor hrca 1055180 10103024 Alide_0992 Alicycliphilus denitrificans BC heat-inducible transcription repressor hrca YP_004125645.1 1054176 D 596153 CDS YP_004125646.1 319761709 10103025 1055520..1056194 1 NC_014910.1 KEGG: dac:Daci_4429 hypothetical protein; manually curated; PFAM: Dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 1056194 10103025 Alide_0993 Alicycliphilus denitrificans BC dimethylmenaquinone methyltransferase YP_004125646.1 1055520 D 596153 CDS YP_004125647.1 319761710 10103026 1056191..1057147 1 NC_014910.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: bxe:Bxe_B0983 2-hydroxyacid dehydrogenase; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 1057147 10103026 Alide_0994 Alicycliphilus denitrificans BC d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein YP_004125647.1 1056191 D 596153 CDS YP_004125648.1 319761711 10103027 complement(1057210..1058112) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vap:Vapar_3933 transcriptional regulator, LysR family; LysR family transcriptional regulator 1058112 10103027 Alide_0995 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125648.1 1057210 R 596153 CDS YP_004125649.1 319761712 10103028 1058264..1059484 1 NC_014910.1 KEGG: mno:Mnod_0890 aminotransferase class I and II; manually curated; PFAM: aminotransferase class I and II; aminotransferase class i and ii 1059484 10103028 Alide_0996 Alicycliphilus denitrificans BC aminotransferase class i and ii YP_004125649.1 1058264 D 596153 CDS YP_004125650.1 319761713 10103029 1059649..1060347 1 NC_014910.1 KEGG: psp:PSPPH_2462 glutamine ABC transporter, permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1060347 10103029 Alide_0997 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004125650.1 1059649 D 596153 CDS YP_004125651.1 319761714 10103030 1060350..1061096 1 NC_014910.1 KEGG: vap:Vapar_6370 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1061096 10103030 Alide_0998 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004125651.1 1060350 D 596153 CDS YP_004125652.1 319761715 10103031 1061107..1061877 1 NC_014910.1 KEGG: rsl:RPSI07_mp0646 amino-acid ATP-binding ABC transporter protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1061877 10103031 Alide_0999 Alicycliphilus denitrificans BC ABC transporter YP_004125652.1 1061107 D 596153 CDS YP_004125653.1 319761716 10103032 1061917..1062750 1 NC_014910.1 KEGG: mno:Mnod_0891 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 1062750 10103032 Alide_1000 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125653.1 1061917 D 596153 CDS YP_004125654.1 319761717 10103033 1062862..1063722 1 NC_014910.1 KEGG: avi:Avi_7667 ABC transporter substrate binding protein (amino acid); PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 1063722 10103033 Alide_1001 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125654.1 1062862 D 596153 CDS YP_004125655.1 319761718 10103034 1063763..1064500 1 NC_014910.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: mno:Mnod_0887 Asp/Glu/hydantoin racemase; asp/glu/hydantoin racemase 1064500 10103034 Alide_1002 Alicycliphilus denitrificans BC asp/glu/hydantoin racemase YP_004125655.1 1063763 D 596153 CDS YP_004125656.1 319761719 10103035 1064520..1064936 1 NC_014910.1 manually curated; KEGG: bbr:BB4733 biotin carboxyl carrier protein of acetyl-CoA carboxylase; biotin carboxyl carrier protein of acetyl-CoA carboxylase 1064936 10103035 Alide_1003 Alicycliphilus denitrificans BC biotin carboxyl carrier protein of acetyl-CoA carboxylase YP_004125656.1 1064520 D 596153 CDS YP_004125657.1 319761720 10103036 1064933..1065616 1 NC_014910.1 KEGG: vap:Vapar_6364 allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 1065616 10103036 Alide_1004 Alicycliphilus denitrificans BC allophanate hydrolase subunit 1 YP_004125657.1 1064933 D 596153 CDS YP_004125658.1 319761721 10103037 1065613..1066590 1 NC_014910.1 SMART: Allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; KEGG: rsl:RPSI07_mp0640 conserved hypothethical protein, allophanate hydrolase subunit 2 domain; PFAM: Allophanate hydrolase subunit 2; urea amidolyase 1066590 10103037 Alide_1005 Alicycliphilus denitrificans BC urea amidolyase YP_004125658.1 1065613 D 596153 CDS YP_004125659.1 319761722 10103038 1066603..1067367 1 NC_014910.1 PFAM: LamB/YcsF family protein; KEGG: mno:Mnod_0902 LamB/YcsF family protein; lamb/ycsf family protein 1067367 10103038 Alide_1006 Alicycliphilus denitrificans BC lamb/ycsf family protein YP_004125659.1 1066603 D 596153 CDS YP_004125660.1 319761723 10103039 1067383..1067856 1 NC_014910.1 KEGG: bph:Bphy_2629 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1067856 10103039 Alide_1007 Alicycliphilus denitrificans BC acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_004125660.1 1067383 D 596153 CDS YP_004125661.1 319761724 10103040 1067860..1069203 1 NC_014910.1 KEGG: bbr:BB4735 biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; acetyl-CoA carboxylase, biotin carboxylase 1069203 10103040 Alide_1008 Alicycliphilus denitrificans BC acetyl-CoA carboxylase, biotin carboxylase YP_004125661.1 1067860 D 596153 CDS YP_004125662.1 319761725 10103041 1069795..1070856 1 NC_014910.1 PFAM: Sporulation domain-containing protein; KEGG: aav:Aave_3575 sporulation domain-containing protein; sporulation domain-containing protein 1070856 10103041 Alide_1009 Alicycliphilus denitrificans BC sporulation domain-containing protein YP_004125662.1 1069795 D 596153 CDS YP_004125663.1 319761726 10103042 1070930..1071271 1 NC_014910.1 KEGG: ajs:Ajs_0920 hypothetical protein; hypothetical protein 1071271 10103042 Alide_1010 Alicycliphilus denitrificans BC hypothetical protein YP_004125663.1 1070930 D 596153 CDS YP_004125664.1 319761727 10103043 complement(1071288..1072523) 1 NC_014910.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; KEGG: dia:Dtpsy_0856 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen iii oxidase 1072523 10103043 Alide_1011 Alicycliphilus denitrificans BC oxygen-independent coproporphyrinogen iii oxidase YP_004125664.1 1071288 R 596153 CDS YP_004125665.1 319761728 10103044 complement(1072615..1073232) 1 NC_014910.1 KEGG: dia:Dtpsy_0857 deoxyribonucleotide triphosphate pyrophosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; non-canonical purine ntp pyrophosphatase, rdgb/ham1 family 1073232 10103044 Alide_1012 Alicycliphilus denitrificans BC non-canonical purine ntp pyrophosphatase, rdgb/ham1 family YP_004125665.1 1072615 R 596153 CDS YP_004125666.1 319761729 10103045 complement(1073278..1074015) 1 NC_014910.1 TIGRFAM: ribonuclease PH; KEGG: dia:Dtpsy_0858 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease ph 1074015 10103045 Alide_1013 Alicycliphilus denitrificans BC ribonuclease ph YP_004125666.1 1073278 R 596153 CDS YP_004125667.1 319761730 10103046 complement(1074083..1074985) 1 NC_014910.1 KEGG: dia:Dtpsy_0859 protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; stage ii sporulation protein e 1074985 10103046 Alide_1014 Alicycliphilus denitrificans BC stage ii sporulation protein e YP_004125667.1 1074083 R 596153 CDS YP_004125668.1 319761731 10103047 complement(1074982..1075998) 1 NC_014910.1 KEGG: dia:Dtpsy_0860 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; serine/threonine-protein kinase-like domain-containing protein 1075998 10103047 Alide_1015 Alicycliphilus denitrificans BC serine/threonine-protein kinase-like domain-containing protein YP_004125668.1 1074982 R 596153 CDS YP_004125669.1 319761732 10103048 1076094..1076987 1 NC_014910.1 PFAM: domain of unknown function DUF1732; YicC-like domain-containing protein; KEGG: ajs:Ajs_0926 hypothetical protein; hypothetical protein 1076987 10103048 Alide_1016 Alicycliphilus denitrificans BC hypothetical protein YP_004125669.1 1076094 D 596153 CDS YP_004125670.1 319761733 10103049 complement(1077019..1080456) 1 NC_014910.1 KEGG: cag:Cagg_1487 hypothetical protein; hypothetical protein 1080456 10103049 Alide_1017 Alicycliphilus denitrificans BC hypothetical protein YP_004125670.1 1077019 R 596153 CDS YP_004125671.1 319761734 10103050 complement(1080477..1082774) 1 NC_014910.1 KEGG: cag:Cagg_1488 hypothetical protein; hypothetical protein 1082774 10103050 Alide_1018 Alicycliphilus denitrificans BC hypothetical protein YP_004125671.1 1080477 R 596153 CDS YP_004125672.1 319761735 10103051 complement(1082771..1085686) 1 NC_014910.1 KEGG: bra:BRADO4376 hypothetical protein; hypothetical protein 1085686 10103051 Alide_1019 Alicycliphilus denitrificans BC hypothetical protein YP_004125672.1 1082771 R 596153 CDS YP_004125673.1 319761736 10103052 complement(1085683..1088175) 1 NC_014910.1 KEGG: chl:Chy400_2341 hypothetical protein; hypothetical protein 1088175 10103052 Alide_1020 Alicycliphilus denitrificans BC hypothetical protein YP_004125673.1 1085683 R 596153 CDS YP_004125674.1 319761737 10103053 complement(1088172..1088540) 1 NC_014910.1 PFAM: GPW/gp25 family protein; KEGG: cag:Cagg_1491 gpW/GP25 family protein; gpw/gp25 family protein 1088540 10103053 Alide_1021 Alicycliphilus denitrificans BC gpw/gp25 family protein YP_004125674.1 1088172 R 596153 CDS YP_004125675.1 319761738 10103054 complement(1088544..1088864) 1 NC_014910.1 KEGG: aba:Acid345_0852 hypothetical protein; hypothetical protein 1088864 10103054 Alide_1022 Alicycliphilus denitrificans BC hypothetical protein YP_004125675.1 1088544 R 596153 CDS YP_004125676.1 319761739 10103055 complement(1088875..1089384) 1 NC_014910.1 KEGG: nde:NIDE2232 hypothetical protein; hypothetical protein 1089384 10103055 Alide_1023 Alicycliphilus denitrificans BC hypothetical protein YP_004125676.1 1088875 R 596153 CDS YP_004125677.1 319761740 10103056 complement(1089396..1090538) 1 NC_014910.1 KEGG: nde:NIDE2231 hypothetical protein; hypothetical protein 1090538 10103056 Alide_1024 Alicycliphilus denitrificans BC hypothetical protein YP_004125677.1 1089396 R 596153 CDS YP_004125678.1 319761741 10103057 complement(1090541..1090903) 1 NC_014910.1 KEGG: aba:Acid345_0855 hypothetical protein; hypothetical protein 1090903 10103057 Alide_1025 Alicycliphilus denitrificans BC hypothetical protein YP_004125678.1 1090541 R 596153 CDS YP_004125679.1 319761742 10103058 complement(1090906..1091562) 1 NC_014910.1 KEGG: nde:NIDE2229 hypothetical protein; hypothetical protein 1091562 10103058 Alide_1026 Alicycliphilus denitrificans BC hypothetical protein YP_004125679.1 1090906 R 596153 CDS YP_004125680.1 319761743 10103059 complement(1091579..1092934) 1 NC_014910.1 KEGG: scl:sce1839 hypothetical protein; hypothetical protein 1092934 10103059 Alide_1027 Alicycliphilus denitrificans BC hypothetical protein YP_004125680.1 1091579 R 596153 CDS YP_004125681.1 319761744 10103060 complement(1093110..1093376) 1 NC_014910.1 KEGG: nde:NIDE2225 hypothetical protein; hypothetical protein 1093376 10103060 Alide_1028 Alicycliphilus denitrificans BC hypothetical protein YP_004125681.1 1093110 R 596153 CDS YP_004125682.1 319761745 10103061 complement(1093373..1095898) 1 NC_014910.1 KEGG: scl:sce2110 hypothetical protein; hypothetical protein 1095898 10103061 Alide_1029 Alicycliphilus denitrificans BC hypothetical protein YP_004125682.1 1093373 R 596153 CDS YP_004125683.1 319761746 10103062 complement(1095895..1097835) 1 NC_014910.1 KEGG: nde:NIDE2224 ATPase; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; ATPase AAA 1097835 10103062 Alide_1030 Alicycliphilus denitrificans BC ATPase AAA YP_004125683.1 1095895 R 596153 CDS YP_004125684.1 319761747 10103063 complement(1097832..1099169) 1 NC_014910.1 KEGG: nde:NIDE2223 hypothetical protein; hypothetical protein 1099169 10103063 Alide_1031 Alicycliphilus denitrificans BC hypothetical protein YP_004125684.1 1097832 R 596153 CDS YP_004125685.1 319761748 10103064 complement(1099166..1099906) 1 NC_014910.1 KEGG: twh:TWT151 hypothetical protein; hypothetical protein 1099906 10103064 Alide_1032 Alicycliphilus denitrificans BC hypothetical protein YP_004125685.1 1099166 R 596153 CDS YP_004125686.1 319761749 10103065 complement(1099903..1100622) 1 NC_014910.1 KEGG: scl:sce2087 hypothetical protein; hypothetical protein 1100622 10103065 Alide_1033 Alicycliphilus denitrificans BC hypothetical protein YP_004125686.1 1099903 R 596153 CDS YP_004125687.1 319761750 10103066 complement(1100639..1101163) 1 NC_014910.1 TIGRFAM: conserved hypothetical protein; KEGG: cag:Cagg_1504 hypothetical protein; hypothetical protein 1101163 10103066 Alide_1034 Alicycliphilus denitrificans BC hypothetical protein YP_004125687.1 1100639 R 596153 CDS YP_004125688.1 319761751 10103067 complement(1101179..1103071) 1 NC_014910.1 KEGG: nha:Nham_0832 phage tail sheath protein; phage tail sheath protein 1103071 10103067 Alide_1035 Alicycliphilus denitrificans BC phage tail sheath protein YP_004125688.1 1101179 R 596153 CDS YP_004125689.1 319761752 10103068 1103463..1104083 1 NC_014910.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: dia:Dtpsy_0862 guanylate kinase; PFAM: guanylate kinase; guanylate kinase 1104083 10103068 Alide_1036 Alicycliphilus denitrificans BC guanylate kinase YP_004125689.1 1103463 D 596153 CDS YP_004125690.1 319761753 10103069 1104103..1104306 1 NC_014910.1 KEGG: dia:Dtpsy_0863 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega 1104306 10103069 Alide_1037 Alicycliphilus denitrificans BC DNA-directed RNA polymerase subunit omega YP_004125690.1 1104103 D 596153 CDS YP_004125691.1 319761754 10103070 1104407..1106671 1 NC_014910.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: dia:Dtpsy_0864 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein; rela/spot family protein 1106671 10103070 Alide_1038 Alicycliphilus denitrificans BC rela/spot family protein YP_004125691.1 1104407 D 596153 CDS YP_004125692.1 319761755 10103071 complement(1106678..1107244) 1 NC_014910.1 KEGG: ajs:Ajs_0950 transcription elongation factor GreB; TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain-containing protein; transcription elongation factor greb 1107244 10103071 Alide_1039 Alicycliphilus denitrificans BC transcription elongation factor greb YP_004125692.1 1106678 R 596153 CDS YP_004125693.1 319761756 10103073 complement(1107573..1107851) 1 NC_014910.1 KEGG: dia:Dtpsy_0866 hypothetical protein; hypothetical protein 1107851 10103073 Alide_1040 Alicycliphilus denitrificans BC hypothetical protein YP_004125693.1 1107573 R 596153 CDS YP_004125694.1 319761757 10103074 1107976..1108332 1 NC_014910.1 KEGG: dia:Dtpsy_0867 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; 30S ribosomal protein S15 1108332 10103074 Alide_1041 Alicycliphilus denitrificans BC 30S ribosomal protein S15 YP_004125694.1 1107976 D 596153 CDS YP_004125695.1 319761758 10103075 1108563..1110758 1 NC_014910.1 SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: ctt:CtCNB1_1057 3' exoribonuclease; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; polyribonucleotide nucleotidyltransferase 1110758 10103075 Alide_1042 Alicycliphilus denitrificans BC polyribonucleotide nucleotidyltransferase YP_004125695.1 1108563 D 596153 CDS YP_004125696.1 319761759 10103076 1110869..1111873 1 NC_014910.1 KEGG: dia:Dtpsy_0869 NAD(P)H quinone oxidoreductase, PIG3 family; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; nad(p)h quinone oxidoreductase, pig3 family 1111873 10103076 Alide_1043 Alicycliphilus denitrificans BC nad(p)h quinone oxidoreductase, pig3 family YP_004125696.1 1110869 D 596153 CDS YP_004125697.1 319761760 10103077 1111861..1112664 1 NC_014910.1 TIGRFAM: triosephosphate isomerase; KEGG: dia:Dtpsy_0870 triosephosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 1112664 10103077 Alide_1044 Alicycliphilus denitrificans BC triosephosphate isomerase YP_004125697.1 1111861 D 596153 CDS YP_004125698.1 319761761 10103078 1112661..1113026 1 NC_014910.1 KEGG: dia:Dtpsy_0871 preprotein translocase, SecG subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase, secg subunit 1113026 10103078 Alide_1045 Alicycliphilus denitrificans BC preprotein translocase, secg subunit YP_004125698.1 1112661 D 596153 CDS YP_004125699.1 319761762 10103080 1113285..1113674 1 NC_014910.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: ajs:Ajs_0957 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 1113674 10103080 Alide_1046 Alicycliphilus denitrificans BC NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_004125699.1 1113285 D 596153 CDS YP_004125700.1 319761763 10103081 1113711..1114190 1 NC_014910.1 TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: dia:Dtpsy_0873 NADH dehydrogenase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase, b subunit 1114190 10103081 Alide_1047 Alicycliphilus denitrificans BC NADH-quinone oxidoreductase, b subunit YP_004125700.1 1113711 D 596153 CDS YP_004125701.1 319761764 10103082 1114200..1114808 1 NC_014910.1 KEGG: aav:Aave_1265 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or f420h2) dehydrogenase, subunit c 1114808 10103082 Alide_1048 Alicycliphilus denitrificans BC NADH (or f420h2) dehydrogenase, subunit c YP_004125701.1 1114200 D 596153 CDS YP_004125702.1 319761765 10103083 1114836..1116089 1 NC_014910.1 TIGRFAM: NADH dehydrogenase I, D subunit; KEGG: dia:Dtpsy_0875 NADH dehydrogenase subunit D; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase i, d subunit 1116089 10103083 Alide_1049 Alicycliphilus denitrificans BC NADH dehydrogenase i, d subunit YP_004125702.1 1114836 D 596153 CDS YP_004125703.1 319761766 10103084 1116086..1116577 1 NC_014910.1 KEGG: dia:Dtpsy_0876 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; NADH-quinone oxidoreductase, e subunit 1116577 10103084 Alide_1050 Alicycliphilus denitrificans BC NADH-quinone oxidoreductase, e subunit YP_004125703.1 1116086 D 596153 CDS YP_004125704.1 319761767 10103085 1116574..1117923 1 NC_014910.1 TIGRFAM: NADH-quinone oxidoreductase, F subunit; KEGG: dia:Dtpsy_0877 NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH-quinone oxidoreductase, f subunit 1117923 10103085 Alide_1051 Alicycliphilus denitrificans BC NADH-quinone oxidoreductase, f subunit YP_004125704.1 1116574 D 596153 CDS YP_004125705.1 319761768 10103086 1117939..1120059 1 NC_014910.1 KEGG: aav:Aave_1269 NADH dehydrogenase subunit G; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase; NADH-quinone oxidoreductase subunit g 1120059 10103086 Alide_1052 Alicycliphilus denitrificans BC NADH-quinone oxidoreductase subunit g YP_004125705.1 1117939 D 596153 CDS YP_004125706.1 319761769 10103087 1120056..1121132 1 NC_014910.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dia:Dtpsy_0879 NADH dehydrogenase (quinone); respiratory-chain NADH dehydrogenase subunit 1 1121132 10103087 Alide_1053 Alicycliphilus denitrificans BC respiratory-chain NADH dehydrogenase subunit 1 YP_004125706.1 1120056 D 596153 CDS YP_004125707.1 319761770 10103088 1121149..1121661 1 NC_014910.1 KEGG: dia:Dtpsy_0880 NADH dehydrogenase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; NADH-quinone oxidoreductase subunit i 1121661 10103088 Alide_1054 Alicycliphilus denitrificans BC NADH-quinone oxidoreductase subunit i YP_004125707.1 1121149 D 596153 CDS YP_004125708.1 319761771 10103089 1121703..1122371 1 NC_014910.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: dia:Dtpsy_0881 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 1122371 10103089 Alide_1055 Alicycliphilus denitrificans BC NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004125708.1 1121703 D 596153 CDS YP_004125709.1 319761772 10103090 1122368..1122676 1 NC_014910.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dia:Dtpsy_0882 NADH-ubiquinone oxidoreductase chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1122676 10103090 Alide_1056 Alicycliphilus denitrificans BC NADH-ubiquinone oxidoreductase subunit 4L YP_004125709.1 1122368 D 596153 CDS YP_004125710.1 319761773 10103091 1122733..1124742 1 NC_014910.1 KEGG: dia:Dtpsy_0883 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit l 1124742 10103091 Alide_1057 Alicycliphilus denitrificans BC proton-translocating NADH-quinone oxidoreductase subunit l YP_004125710.1 1122733 D 596153 CDS YP_004125711.1 319761774 10103092 1124756..1126231 1 NC_014910.1 KEGG: dia:Dtpsy_0884 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit m 1126231 10103092 Alide_1058 Alicycliphilus denitrificans BC proton-translocating NADH-quinone oxidoreductase subunit m YP_004125711.1 1124756 D 596153 CDS YP_004125712.1 319761775 10103093 1126253..1127749 1 NC_014910.1 KEGG: dia:Dtpsy_0885 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit n 1127749 10103093 Alide_1059 Alicycliphilus denitrificans BC proton-translocating NADH-quinone oxidoreductase subunit n YP_004125712.1 1126253 D 596153 CDS YP_004125713.1 319761776 10103094 1127769..1128086 1 NC_014910.1 KEGG: dia:Dtpsy_0886 transmembrane protein; transmembrane protein 1128086 10103094 Alide_1060 Alicycliphilus denitrificans BC transmembrane protein YP_004125713.1 1127769 D 596153 CDS YP_004125714.1 319761777 10103095 1128097..1128561 1 NC_014910.1 KEGG: dia:Dtpsy_0887 protein of unknown function DUF1178; manually curated; PFAM: protein of unknown function DUF1178; hypothetical protein 1128561 10103095 Alide_1061 Alicycliphilus denitrificans BC hypothetical protein YP_004125714.1 1128097 D 596153 CDS YP_004125715.1 319761778 10103096 complement(1128568..1128936) 1 NC_014910.1 KEGG: ajs:Ajs_0974 hypothetical protein; hypothetical protein 1128936 10103096 Alide_1062 Alicycliphilus denitrificans BC hypothetical protein YP_004125715.1 1128568 R 596153 CDS YP_004125716.1 319761779 10103097 complement(1128980..1130398) 1 NC_014910.1 KEGG: ajs:Ajs_0977 glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; glutamate dehydrogenase (nadp(+)) 1130398 10103097 Alide_1063 Alicycliphilus denitrificans BC glutamate dehydrogenase (nadp(+)) YP_004125716.1 1128980 R 596153 CDS YP_004125717.1 319761780 10103098 complement(1130631..1132607) 1 NC_014910.1 KEGG: ajs:Ajs_0978 DNA mismatch repair protein MutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; DNA mismatch repair protein mutl 1132607 10103098 Alide_1064 Alicycliphilus denitrificans BC DNA mismatch repair protein mutl YP_004125717.1 1130631 R 596153 CDS YP_004125718.1 319761781 10103099 complement(1132615..1132869) 1 NC_014910.1 KEGG: dia:Dtpsy_0894 17 kDa surface antigen; hypothetical protein 1132869 10103099 Alide_1065 Alicycliphilus denitrificans BC hypothetical protein YP_004125718.1 1132615 R 596153 CDS YP_004125719.1 319761782 10103100 1133095..1133742 1 NC_014910.1 PFAM: SNARE associated Golgi protein; KEGG: dia:Dtpsy_1467 SNARE associated Golgi protein; hypothetical protein 1133742 10103100 Alide_1066 Alicycliphilus denitrificans BC hypothetical protein YP_004125719.1 1133095 D 596153 CDS YP_004125720.1 319761783 10103101 complement(1133746..1135026) 1 NC_014910.1 KEGG: vap:Vapar_3881 guanine deaminase; TIGRFAM: guanine deaminase; PFAM: amidohydrolase; guanine deaminase 1135026 10103101 Alide_1067 Alicycliphilus denitrificans BC guanine deaminase YP_004125720.1 1133746 R 596153 CDS YP_004125721.1 319761784 10103102 complement(1135031..1136386) 1 NC_014910.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: dac:Daci_5908 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin c permease 1136386 10103102 Alide_1068 Alicycliphilus denitrificans BC xanthine/uracil/vitamin c permease YP_004125721.1 1135031 R 596153 CDS YP_004125722.1 319761785 10103103 complement(1136417..1137430) 1 NC_014910.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vap:Vapar_3905 transcriptional regulator, LysR family; LysR family transcriptional regulator 1137430 10103103 Alide_1069 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125722.1 1136417 R 596153 CDS YP_004125723.1 319761786 10103104 complement(1137427..1139856) 1 NC_014910.1 KEGG: vap:Vapar_3906 xanthine dehydrogenase, molybdopterin binding subunit; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; xanthine dehydrogenase molybdopterin binding subunit 1139856 10103104 Alide_1070 Alicycliphilus denitrificans BC xanthine dehydrogenase molybdopterin binding subunit YP_004125723.1 1137427 R 596153 CDS YP_004125724.1 319761787 10103105 complement(1139866..1141425) 1 NC_014910.1 KEGG: dac:Daci_5910 xanthine dehydrogenase, small subunit; TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain-containing protein; CO dehydrogenase flavoprotein domain protein; xanthine dehydrogenase small subunit 1141425 10103105 Alide_1071 Alicycliphilus denitrificans BC xanthine dehydrogenase small subunit YP_004125724.1 1139866 R 596153 CDS YP_004125725.1 319761788 10103106 complement(1141635..1141970) 1 NC_014910.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: har:HEAR2969 hypothetical protein; cupin 2 barrel domain-containing protein 1141970 10103106 Alide_1072 Alicycliphilus denitrificans BC cupin 2 barrel domain-containing protein YP_004125725.1 1141635 R 596153 CDS YP_004125726.1 319761789 10103107 complement(1141995..1143401) 1 NC_014910.1 KEGG: ajs:Ajs_0983 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 1143401 10103107 Alide_1073 Alicycliphilus denitrificans BC cell wall hydrolase/autolysin YP_004125726.1 1141995 R 596153 CDS YP_004125727.1 319761790 10103108 complement(1143398..1143907) 1 NC_014910.1 KEGG: dia:Dtpsy_0899 protein of unknown function UPF0079; manually curated; PFAM: Uncharacterised protein family UPF0079, ATPase; hypothetical protein 1143907 10103108 Alide_1074 Alicycliphilus denitrificans BC hypothetical protein YP_004125727.1 1143398 R 596153 CDS YP_004125728.1 319761791 10103110 complement(1145031..1145948) 1 NC_014910.1 PFAM: Auxin Efflux Carrier; KEGG: dia:Dtpsy_0901 auxin efflux carrier; auxin efflux carrier 1145948 10103110 Alide_1076 Alicycliphilus denitrificans BC auxin efflux carrier YP_004125728.1 1145031 R 596153 CDS YP_004125729.1 319761792 10103111 1146141..1147106 1 NC_014910.1 KEGG: dia:Dtpsy_0902 hypothetical protein; hypothetical protein 1147106 10103111 Alide_1077 Alicycliphilus denitrificans BC hypothetical protein YP_004125729.1 1146141 D 596153 CDS YP_004125730.1 319761793 10103112 1147154..1148053 1 NC_014910.1 KEGG: dia:Dtpsy_0903 tyrosine recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; tyrosine recombinase xerd 1148053 10103112 Alide_1078 Alicycliphilus denitrificans BC tyrosine recombinase xerd YP_004125730.1 1147154 D 596153 CDS YP_004125731.1 319761794 10103113 complement(1148326..1149387) 1 NC_014910.1 KEGG: ctt:CtCNB1_2005 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; pas sensor protein 1149387 10103113 Alide_1079 Alicycliphilus denitrificans BC pas sensor protein YP_004125731.1 1148326 R 596153 CDS YP_004125732.1 319761795 10103114 1149659..1150642 1 NC_014910.1 KEGG: ajs:Ajs_0989 hypothetical protein; hypothetical protein 1150642 10103114 Alide_1080 Alicycliphilus denitrificans BC hypothetical protein YP_004125732.1 1149659 D 596153 CDS YP_004125733.1 319761796 10103115 complement(1150662..1151948) 1 NC_014910.1 KEGG: dia:Dtpsy_0905 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; diguanylate phosphodiesterase 1151948 10103115 Alide_1081 Alicycliphilus denitrificans BC diguanylate phosphodiesterase YP_004125733.1 1150662 R 596153 CDS YP_004125734.1 319761797 10103116 complement(1151986..1153254) 1 NC_014910.1 KEGG: dia:Dtpsy_0906 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; diguanylate phosphodiesterase 1153254 10103116 Alide_1082 Alicycliphilus denitrificans BC diguanylate phosphodiesterase YP_004125734.1 1151986 R 596153 CDS YP_004125735.1 319761798 10103117 complement(1153343..1154149) 1 NC_014910.1 KEGG: dia:Dtpsy_0907 protein of unknown function DUF455; manually curated; PFAM: protein of unknown function DUF455; hypothetical protein 1154149 10103117 Alide_1083 Alicycliphilus denitrificans BC hypothetical protein YP_004125735.1 1153343 R 596153 CDS YP_004125736.1 319761799 10103118 1154199..1154723 1 NC_014910.1 KEGG: ajs:Ajs_0993 transferase hexapeptide protein; transferase 1154723 10103118 Alide_1084 Alicycliphilus denitrificans BC transferase YP_004125736.1 1154199 D 596153 CDS YP_004125737.1 319761800 10103119 1154733..1155719 1 NC_014910.1 PFAM: Hsp33 protein; KEGG: ajs:Ajs_0994 HSP33 protein; hsp33 protein 1155719 10103119 Alide_1085 Alicycliphilus denitrificans BC hsp33 protein YP_004125737.1 1154733 D 596153 CDS YP_004125738.1 319761801 10103120 1155784..1156545 1 NC_014910.1 KEGG: rfr:Rfer_1525 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; ABC transporter substrate-binding protein 1156545 10103120 Alide_1086 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125738.1 1155784 D 596153 CDS YP_004125739.1 319761802 10103121 1156576..1157265 1 NC_014910.1 KEGG: rfr:Rfer_1524 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1157265 10103121 Alide_1087 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004125739.1 1156576 D 596153 CDS YP_004125740.1 319761803 10103122 1157262..1157975 1 NC_014910.1 KEGG: rfr:Rfer_1523 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1157975 10103122 Alide_1088 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004125740.1 1157262 D 596153 CDS YP_004125741.1 319761804 10103123 1157986..1158765 1 NC_014910.1 KEGG: rfr:Rfer_1521 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1158765 10103123 Alide_1089 Alicycliphilus denitrificans BC ABC transporter YP_004125741.1 1157986 D 596153 CDS YP_004125742.1 319761805 10103124 complement(1158835..1159122) 1 NC_014910.1 PFAM: Septum formation initiator; KEGG: dia:Dtpsy_0911 septum formation initiator; septum formation initiator 1159122 10103124 Alide_1090 Alicycliphilus denitrificans BC septum formation initiator YP_004125742.1 1158835 R 596153 CDS YP_004125743.1 319761806 10103125 complement(1159150..1160436) 1 NC_014910.1 TIGRFAM: enolase; KEGG: aav:Aave_1322 phosphopyruvate hydratase; PFAM: Enolase-like; enolase 1160436 10103125 Alide_1091 Alicycliphilus denitrificans BC enolase YP_004125743.1 1159150 R 596153 CDS YP_004125744.1 319761807 10103126 complement(1160619..1160909) 1 NC_014910.1 PFAM: protein of unknown function DUF1330; KEGG: dac:Daci_5107 hypothetical protein; hypothetical protein 1160909 10103126 Alide_1092 Alicycliphilus denitrificans BC hypothetical protein YP_004125744.1 1160619 R 596153 CDS YP_004125745.1 319761808 10103127 complement(1160912..1161769) 1 NC_014910.1 KEGG: dac:Daci_5106 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase 1161769 10103127 Alide_1093 Alicycliphilus denitrificans BC 2-dehydro-3-deoxyphosphooctonate aldolase YP_004125745.1 1160912 R 596153 CDS YP_004125746.1 319761809 10103128 complement(1161775..1163424) 1 NC_014910.1 TIGRFAM: CTP synthase; KEGG: dia:Dtpsy_0915 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; ctp synthase 1163424 10103128 Alide_1094 Alicycliphilus denitrificans BC ctp synthase YP_004125746.1 1161775 R 596153 CDS YP_004125747.1 319761810 10103129 1163500..1164726 1 NC_014910.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: dia:Dtpsy_0916 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1164726 10103129 Alide_1095 Alicycliphilus denitrificans BC phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_004125747.1 1163500 D 596153 CDS YP_004125748.1 319761811 10103130 1164723..1165124 1 NC_014910.1 KEGG: vap:Vapar_3441 hypothetical protein; hypothetical protein 1165124 10103130 Alide_1096 Alicycliphilus denitrificans BC hypothetical protein YP_004125748.1 1164723 D 596153 CDS YP_004125749.1 319761812 10103131 1165193..1165639 1 NC_014910.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: dia:Dtpsy_0917 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase dut 1165639 10103131 Alide_1097 Alicycliphilus denitrificans BC deoxyuridine 5'-triphosphate nucleotidohydrolase dut YP_004125749.1 1165193 D 596153 CDS YP_004125750.1 319761813 10103132 complement(1165646..1166170) 1 NC_014910.1 KEGG: dia:Dtpsy_0919 fkbp-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 1166170 10103132 Alide_1098 Alicycliphilus denitrificans BC FKBP-type peptidylprolyl isomerase YP_004125750.1 1165646 R 596153 CDS YP_004125751.1 319761814 10103133 1166224..1167348 1 NC_014910.1 SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: dia:Dtpsy_0920 cupin 4 family protein; transcription factor jumonji jmjc domain-containing protein 1167348 10103133 Alide_1099 Alicycliphilus denitrificans BC transcription factor jumonji jmjc domain-containing protein YP_004125751.1 1166224 D 596153 CDS YP_004125752.1 319761815 10103134 1167365..1167862 1 NC_014910.1 KEGG: dia:Dtpsy_0921 hypothetical protein; hypothetical protein 1167862 10103134 Alide_1100 Alicycliphilus denitrificans BC hypothetical protein YP_004125752.1 1167365 D 596153 CDS YP_004125753.1 319761816 10103135 complement(1168428..1169516) 1 NC_014910.1 KEGG: ajs:Ajs_1009 NlpB/DapX family lipoprotein; nlpb/dapx family lipoprotein 1169516 10103135 Alide_1101 Alicycliphilus denitrificans BC nlpb/dapx family lipoprotein YP_004125753.1 1168428 R 596153 CDS YP_004125754.1 319761817 10103136 complement(1169551..1170447) 1 NC_014910.1 KEGG: dia:Dtpsy_0924 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 1170447 10103136 Alide_1102 Alicycliphilus denitrificans BC dihydrodipicolinate synthase YP_004125754.1 1169551 R 596153 CDS YP_004125755.1 319761818 10103137 complement(1170456..1170986) 1 NC_014910.1 PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_0925 methyltransferase type 12; type 11 methyltransferase 1170986 10103137 Alide_1103 Alicycliphilus denitrificans BC type 11 methyltransferase YP_004125755.1 1170456 R 596153 CDS YP_004125756.1 319761819 10103138 complement(1170986..1171114) 1 NC_014910.1 KEGG: ajs:Ajs_1012 hypothetical protein; hypothetical protein 1171114 10103138 Alide_1104 Alicycliphilus denitrificans BC hypothetical protein YP_004125756.1 1170986 R 596153 CDS YP_004125757.1 319761820 10103139 complement(1171119..1172336) 1 NC_014910.1 KEGG: dia:Dtpsy_0927 major facilitator superfamily MFS_1; manually curated; PFAM: major facilitator superfamily MFS_1; major facilitator superfamily protein 1172336 10103139 Alide_1105 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004125757.1 1171119 R 596153 CDS YP_004125758.1 319761821 10103140 1172432..1174408 1 NC_014910.1 PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein; KEGG: dia:Dtpsy_0928 DNA topoisomerase IV subunit B; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA topoisomerase 1174408 10103140 Alide_1106 Alicycliphilus denitrificans BC DNA topoisomerase YP_004125758.1 1172432 D 596153 CDS YP_004125759.1 319761822 10103141 1174464..1176806 1 NC_014910.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, A subunit; KEGG: ajs:Ajs_1016 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA topoisomerase iv, a subunit 1176806 10103141 Alide_1107 Alicycliphilus denitrificans BC DNA topoisomerase iv, a subunit YP_004125759.1 1174464 D 596153 CDS YP_004125760.1 319761823 10103142 complement(1176914..1177372) 1 NC_014910.1 PFAM: Endoribonuclease L-PSP; KEGG: ajs:Ajs_1018 endoribonuclease L-PSP; endoribonuclease L-PSP 1177372 10103142 Alide_1108 Alicycliphilus denitrificans BC endoribonuclease L-PSP YP_004125760.1 1176914 R 596153 CDS YP_004125761.1 319761824 10103143 1177478..1179877 1 NC_014910.1 KEGG: dia:Dtpsy_0933 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 1179877 10103143 Alide_1109 Alicycliphilus denitrificans BC DNA internalization-related competence protein ComEC/Rec2 YP_004125761.1 1177478 D 596153 CDS YP_004125762.1 319761825 10103144 1180115..1181551 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: dia:Dtpsy_0944 aldehyde dehydrogenase; aldehyde dehydrogenase 1181551 10103144 Alide_1110 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004125762.1 1180115 D 596153 CDS YP_004125763.1 319761826 10103145 complement(1181757..1182656) 1 NC_014910.1 KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; rhodanese domain-containing protein 1182656 10103145 Alide_1111 Alicycliphilus denitrificans BC rhodanese domain-containing protein YP_004125763.1 1181757 R 596153 CDS YP_004125764.1 319761827 10103146 complement(1182710..1183621) 1 NC_014910.1 KEGG: dia:Dtpsy_0952 transmembrane protein; transmembrane protein 1183621 10103146 Alide_1112 Alicycliphilus denitrificans BC transmembrane protein YP_004125764.1 1182710 R 596153 CDS YP_004125765.1 319761828 10103147 complement(1183715..1184854) 1 NC_014910.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain-containing protein; rieske (2fe-2S) iron-sulfur domain-containing protein 1184854 10103147 Alide_1113 Alicycliphilus denitrificans BC rieske (2fe-2S) iron-sulfur domain-containing protein YP_004125765.1 1183715 R 596153 CDS YP_004125766.1 319761829 10103148 1185130..1185372 1 NC_014910.1 KEGG: ajs:Ajs_1036 exodeoxyribonuclease VII, small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 1185372 10103148 Alide_1114 Alicycliphilus denitrificans BC exodeoxyribonuclease VII small subunit YP_004125766.1 1185130 D 596153 CDS YP_004125767.1 319761830 10103149 1185372..1186265 1 NC_014910.1 PFAM: Polyprenyl synthetase; KEGG: dia:Dtpsy_0955 polyprenyl synthetase; polyprenyl synthetase 1186265 10103149 Alide_1115 Alicycliphilus denitrificans BC polyprenyl synthetase YP_004125767.1 1185372 D 596153 CDS YP_004125768.1 319761831 10103150 1186340..1188232 1 NC_014910.1 KEGG: dia:Dtpsy_0956 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; dehydrogenase E1 component; Transketolase domain-containing protein; deoxyxylulose-5-phosphate synthase 1188232 10103150 Alide_1116 Alicycliphilus denitrificans BC deoxyxylulose-5-phosphate synthase YP_004125768.1 1186340 D 596153 CDS YP_004125769.1 319761832 10103151 1188360..1189442 1 NC_014910.1 PFAM: Extracellular solute-binding protein, family 7; KEGG: ctt:CtCNB1_3520 twin-arginine translocation pathway signal; ABC transporter substrate-binding protein 1189442 10103151 Alide_1117 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125769.1 1188360 D 596153 CDS YP_004125770.1 319761833 10103152 complement(1189522..1194219) 1 NC_014910.1 KEGG: gdi:GDI_2676 DEAD/H associated; region: DEAD_assoc; pfam08494; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; dead/h associated domain-containing protein 1194219 10103152 Alide_1118 Alicycliphilus denitrificans BC dead/h associated domain-containing protein YP_004125770.1 1189522 R 596153 CDS YP_004125771.1 319761834 10103153 complement(1194354..1196180) 1 NC_014910.1 KEGG: dia:Dtpsy_0958 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM 1196180 10103153 Alide_1119 Alicycliphilus denitrificans BC trap dicarboxylate transporter subunit DctM YP_004125771.1 1194354 R 596153 CDS YP_004125772.1 319761835 10103154 complement(1196199..1196813) 1 NC_014910.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ctt:CtCNB1_3517 tripartite ATP-independent periplasmic protein; tripartite ATP-independent periplasmic transporter dctq component 1196813 10103154 Alide_1120 Alicycliphilus denitrificans BC tripartite ATP-independent periplasmic transporter dctq component YP_004125772.1 1196199 R 596153 CDS YP_004125773.1 319761836 10103155 complement(1197155..1198108) 1 NC_014910.1 PFAM: inositol monophosphatase; KEGG: dia:Dtpsy_0963 inositol-phosphate phosphatase; inositol monophosphatase 1198108 10103155 Alide_1121 Alicycliphilus denitrificans BC inositol monophosphatase YP_004125773.1 1197155 R 596153 CDS YP_004125774.1 319761837 10103156 1198238..1199050 1 NC_014910.1 KEGG: ajs:Ajs_1046 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase, trmh family, group 1 1199050 10103156 Alide_1122 Alicycliphilus denitrificans BC RNA methyltransferase, trmh family, group 1 YP_004125774.1 1198238 D 596153 CDS YP_004125775.1 319761838 10103157 1199088..1199879 1 NC_014910.1 TIGRFAM: serine O-acetyltransferase; KEGG: ajs:Ajs_1047 serine O-acetyltransferase; serine o-acetyltransferase 1199879 10103157 Alide_1123 Alicycliphilus denitrificans BC serine o-acetyltransferase YP_004125775.1 1199088 D 596153 CDS YP_004125776.1 319761839 10103158 1199939..1200601 1 NC_014910.1 PFAM: nitroreductase; KEGG: dia:Dtpsy_0966 nitroreductase; nitroreductase 1200601 10103158 Alide_1124 Alicycliphilus denitrificans BC nitroreductase YP_004125776.1 1199939 D 596153 CDS YP_004125777.1 319761840 10103159 complement(1200605..1201702) 1 NC_014910.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dia:Dtpsy_0967 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase 1201702 10103159 Alide_1125 Alicycliphilus denitrificans BC alcohol dehydrogenase YP_004125777.1 1200605 R 596153 CDS YP_004125778.1 319761841 10103160 complement(1201795..1202391) 1 NC_014910.1 KEGG: ajs:Ajs_1051 molybdopterin adenylyltransferase; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 1202391 10103160 Alide_1126 Alicycliphilus denitrificans BC molybdenum cofactor synthesis domain-containing protein YP_004125778.1 1201795 R 596153 CDS YP_004125779.1 319761842 10103161 complement(1202388..1203056) 1 NC_014910.1 PFAM: protein of unknown function DUF615; KEGG: dia:Dtpsy_0970 protein of unknown function DUF615; hypothetical protein 1203056 10103161 Alide_1127 Alicycliphilus denitrificans BC hypothetical protein YP_004125779.1 1202388 R 596153 CDS YP_004125780.1 319761843 10103162 1203139..1204560 1 NC_014910.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: dia:Dtpsy_0971 peptidase U62 modulator of DNA gyrase; peptidase u62 modulator of DNA gyrase 1204560 10103162 Alide_1128 Alicycliphilus denitrificans BC peptidase u62 modulator of DNA gyrase YP_004125780.1 1203139 D 596153 CDS YP_004125781.1 319761844 10103164 1205591..1206127 1 NC_014910.1 KEGG: srm:SRM_02731 two-component sensor histidine kinase; hypothetical protein 1206127 10103164 Alide_1130 Alicycliphilus denitrificans BC hypothetical protein YP_004125781.1 1205591 D 596153 CDS YP_004125782.1 319761845 10103165 1206118..1206453 1 NC_014910.1 KEGG: xca:xccb100_2303 siroheme synthase; hypothetical protein 1206453 10103165 Alide_1131 Alicycliphilus denitrificans BC hypothetical protein YP_004125782.1 1206118 D 596153 CDS YP_004125783.1 319761846 10103166 complement(1206428..1209505) 1 NC_014910.1 PFAM: Hemolysin-type calcium-binding region; KEGG: cvi:CV_0516 calcium binding hemolysin; hemolysin-type calcium-binding protein 1209505 10103166 Alide_1132 Alicycliphilus denitrificans BC hemolysin-type calcium-binding protein YP_004125783.1 1206428 R 596153 CDS YP_004125784.1 319761847 10103167 complement(1209520..1210224) 1 NC_014910.1 KEGG: reu:Reut_C5923 hypothetical protein; hypothetical protein 1210224 10103167 Alide_1133 Alicycliphilus denitrificans BC hypothetical protein YP_004125784.1 1209520 R 596153 CDS YP_004125785.1 319761848 10103168 complement(1210224..1210535) 1 NC_014910.1 KEGG: mpt:Mpe_B0404 hypothetical protein; hypothetical protein 1210535 10103168 Alide_1134 Alicycliphilus denitrificans BC hypothetical protein YP_004125785.1 1210224 R 596153 CDS YP_004125786.1 319761849 10103169 complement(1210686..1211267) 1 NC_014910.1 TIGRFAM: LexA repressor; KEGG: bpy:Bphyt_3718 LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; lexa repressor 1211267 10103169 Alide_1135 Alicycliphilus denitrificans BC lexa repressor YP_004125786.1 1210686 R 596153 CDS YP_004125787.1 319761850 10103170 1212050..1212373 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1212373 10103170 Alide_1136 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004125787.1 1212050 D 596153 CDS YP_004125788.1 319761851 10103173 1215217..1216530 1 NC_014910.1 KEGG: dac:Daci_5142 hypothetical protein; hypothetical protein 1216530 10103173 Alide_1139 Alicycliphilus denitrificans BC hypothetical protein YP_004125788.1 1215217 D 596153 CDS YP_004125789.1 319761852 10103174 1216539..1218743 1 NC_014910.1 KEGG: dac:Daci_5141 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; dead/deah box helicase domain-containing protein 1218743 10103174 Alide_1140 Alicycliphilus denitrificans BC dead/deah box helicase domain-containing protein YP_004125789.1 1216539 D 596153 CDS YP_004125790.1 319761853 10103175 complement(1218907..1220466) 1 NC_014910.1 KEGG: dac:Daci_2654 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type hydro-lyase tartrate/fumarate alpha region; fe-s type, tartrate/fumarate subfamily hydro-lyase subunit alpha 1220466 10103175 Alide_1141 Alicycliphilus denitrificans BC fe-s type, tartrate/fumarate subfamily hydro-lyase subunit alpha YP_004125790.1 1218907 R 596153 CDS YP_004125791.1 319761854 10103176 1220635..1222020 1 NC_014910.1 KEGG: aav:Aave_1491 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like; fumarate hydratase, class ii 1222020 10103176 Alide_1142 Alicycliphilus denitrificans BC fumarate hydratase, class ii YP_004125791.1 1220635 D 596153 CDS YP_004125792.1 319761855 10103177 complement(1222021..1222803) 1 NC_014910.1 KEGG: dia:Dtpsy_0976 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein 1222803 10103177 Alide_1143 Alicycliphilus denitrificans BC cyclic nucleotide-binding protein YP_004125792.1 1222021 R 596153 CDS YP_004125793.1 319761856 10103178 complement(1222990..1224000) 1 NC_014910.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dia:Dtpsy_0979 glycine betaine transporter periplasmic subunit; glycine betaine ABC transporter substrate-binding protein 1224000 10103178 Alide_1144 Alicycliphilus denitrificans BC glycine betaine ABC transporter substrate-binding protein YP_004125793.1 1222990 R 596153 CDS YP_004125794.1 319761857 10103179 complement(1224076..1225188) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0980 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1225188 10103179 Alide_1145 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125794.1 1224076 R 596153 CDS YP_004125795.1 319761858 10103180 complement(1225185..1226489) 1 NC_014910.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: ajs:Ajs_1065 glycine betaine/L-proline ABC transporter, ATPase subunit; SMART: AAA ATPase; glycine betaine/l-proline ABC transporter ATPase 1226489 10103180 Alide_1146 Alicycliphilus denitrificans BC glycine betaine/l-proline ABC transporter ATPase YP_004125795.1 1225185 R 596153 CDS YP_004125796.1 319761859 10103181 1227143..1229140 1 NC_014910.1 KEGG: aav:Aave_1499 acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate/CoA ligase 1229140 10103181 Alide_1147 Alicycliphilus denitrificans BC acetate/CoA ligase YP_004125796.1 1227143 D 596153 CDS YP_004125797.1 319761860 10103182 complement(1229255..1230301) 1 NC_014910.1 KEGG: aav:Aave_1061 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; von Willebrand factor A 1230301 10103182 Alide_1148 Alicycliphilus denitrificans BC von Willebrand factor A YP_004125797.1 1229255 R 596153 CDS YP_004125798.1 319761861 10103183 complement(1230334..1231302) 1 NC_014910.1 PFAM: protein of unknown function DUF58; KEGG: aav:Aave_1062 hypothetical protein; hypothetical protein 1231302 10103183 Alide_1149 Alicycliphilus denitrificans BC hypothetical protein YP_004125798.1 1230334 R 596153 CDS YP_004125799.1 319761862 10103184 complement(1231295..1232326) 1 NC_014910.1 PFAM: ATPase associated with various cellular activities AAA_3; KEGG: aav:Aave_1063 ATPase; ATPase AAA 1232326 10103184 Alide_1150 Alicycliphilus denitrificans BC ATPase AAA YP_004125799.1 1231295 R 596153 CDS YP_004125800.1 319761863 10103185 complement(1232341..1233240) 1 NC_014910.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: aav:Aave_1064 peptidase S1 and S6, chymotrypsin/Hap; peptidase s1 and s6 chymotrypsin/hap 1233240 10103185 Alide_1151 Alicycliphilus denitrificans BC peptidase s1 and s6 chymotrypsin/hap YP_004125800.1 1232341 R 596153 CDS YP_004125801.1 319761864 10103186 complement(1233345..1233707) 1 NC_014910.1 KEGG: dia:Dtpsy_2753 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 1233707 10103186 Alide_1152 Alicycliphilus denitrificans BC alkylhydroperoxidase YP_004125801.1 1233345 R 596153 CDS YP_004125802.1 319761865 10103187 1233852..1234160 1 NC_014910.1 KEGG: dia:Dtpsy_2752 transcriptional regulator, TrmB; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; regulatory protein arsr 1234160 10103187 Alide_1153 Alicycliphilus denitrificans BC regulatory protein arsr YP_004125802.1 1233852 D 596153 CDS YP_004125803.1 319761866 10103188 1234190..1234387 1 NC_014910.1 KEGG: dia:Dtpsy_2751 hypothetical protein; hypothetical protein 1234387 10103188 Alide_1154 Alicycliphilus denitrificans BC hypothetical protein YP_004125803.1 1234190 D 596153 CDS YP_004125804.1 319761867 10103189 1234398..1235243 1 NC_014910.1 PFAM: TatD-related deoxyribonuclease; KEGG: ajs:Ajs_3416 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 1235243 10103189 Alide_1155 Alicycliphilus denitrificans BC TatD-related deoxyribonuclease YP_004125804.1 1234398 D 596153 CDS YP_004125805.1 319761868 10103190 1235318..1235842 1 NC_014910.1 KEGG: dia:Dtpsy_2749 hypothetical protein; hypothetical protein 1235842 10103190 Alide_1156 Alicycliphilus denitrificans BC hypothetical protein YP_004125805.1 1235318 D 596153 CDS YP_004125806.1 319761869 10103191 1235839..1236600 1 NC_014910.1 KEGG: dia:Dtpsy_2748 hypothetical protein; hypothetical protein 1236600 10103191 Alide_1157 Alicycliphilus denitrificans BC hypothetical protein YP_004125806.1 1235839 D 596153 CDS YP_004125807.1 319761870 10103192 1236605..1238371 1 NC_014910.1 KEGG: dia:Dtpsy_2747 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; type II secretion system protein e 1238371 10103192 Alide_1158 Alicycliphilus denitrificans BC type II secretion system protein e YP_004125807.1 1236605 D 596153 CDS YP_004125808.1 319761871 10103193 1238502..1238990 1 NC_014910.1 KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468; hypothetical protein 1238990 10103193 Alide_1159 Alicycliphilus denitrificans BC hypothetical protein YP_004125808.1 1238502 D 596153 CDS YP_004125809.1 319761872 10103194 1239007..1240518 1 NC_014910.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein; hypothetical protein 1240518 10103194 Alide_1160 Alicycliphilus denitrificans BC hypothetical protein YP_004125809.1 1239007 D 596153 CDS YP_004125810.1 319761873 10103195 1240720..1241550 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2744 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 1241550 10103195 Alide_1161 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004125810.1 1240720 D 596153 CDS YP_004125811.1 319761874 10103196 1241550..1242617 1 NC_014910.1 PFAM: Extracellular solute-binding protein, family 7; KEGG: ajs:Ajs_3408 TRAP dicarboxylate transporter-DctP subunit; ABC transporter substrate-binding protein 1242617 10103196 Alide_1162 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125811.1 1241550 D 596153 CDS YP_004125812.1 319761875 10103197 1242614..1245277 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: dia:Dtpsy_2742 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase 1245277 10103197 Alide_1163 Alicycliphilus denitrificans BC diguanylate cyclase YP_004125812.1 1242614 D 596153 CDS YP_004125813.1 319761876 10103198 complement(1245300..1246202) 1 NC_014910.1 KEGG: ajs:Ajs_3406 hypothetical protein; manually curated; PFAM: protein of unknown function DUF6 transmembrane; hypothetical protein 1246202 10103198 Alide_1164 Alicycliphilus denitrificans BC hypothetical protein YP_004125813.1 1245300 R 596153 CDS YP_004125814.1 319761877 10103199 1246308..1247294 1 NC_014910.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dia:Dtpsy_2740 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase 1247294 10103199 Alide_1165 Alicycliphilus denitrificans BC alcohol dehydrogenase YP_004125814.1 1246308 D 596153 CDS YP_004125815.1 319761878 10103200 1247291..1248109 1 NC_014910.1 PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_3404 NUDIX hydrolase; nudix hydrolase 1248109 10103200 Alide_1166 Alicycliphilus denitrificans BC nudix hydrolase YP_004125815.1 1247291 D 596153 CDS YP_004125816.1 319761879 10103201 complement(1248063..1249004) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_3178 LysR family transcriptional regulator; LysR family transcriptional regulator 1249004 10103201 Alide_1167 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125816.1 1248063 R 596153 CDS YP_004125817.1 319761880 10103202 1249119..1250084 1 NC_014910.1 KEGG: dia:Dtpsy_2738 hypothetical protein; manually curated; PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 1250084 10103202 Alide_1168 Alicycliphilus denitrificans BC bile acid:sodium symporter YP_004125817.1 1249119 D 596153 CDS YP_004125818.1 319761881 10103203 complement(1250094..1251761) 1 NC_014910.1 KEGG: aav:Aave_3461 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; Na/Pi-cotransporter II-like protein 1251761 10103203 Alide_1169 Alicycliphilus denitrificans BC Na/Pi-cotransporter II-like protein YP_004125818.1 1250094 R 596153 CDS YP_004125819.1 319761882 10103204 complement(1251784..1252623) 1 NC_014910.1 PFAM: metallophosphoesterase; KEGG: vap:Vapar_1261 metallophosphoesterase; metallophosphoesterase 1252623 10103204 Alide_1170 Alicycliphilus denitrificans BC metallophosphoesterase YP_004125819.1 1251784 R 596153 CDS YP_004125820.1 319761883 10103205 complement(1252620..1253681) 1 NC_014910.1 KEGG: vap:Vapar_1262 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 1253681 10103205 Alide_1171 Alicycliphilus denitrificans BC ABC transporter YP_004125820.1 1252620 R 596153 CDS YP_004125821.1 319761884 10103206 complement(1253671..1254471) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1263 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1254471 10103206 Alide_1172 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125821.1 1253671 R 596153 CDS YP_004125822.1 319761885 10103207 complement(1254497..1255306) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1264 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1255306 10103207 Alide_1173 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125822.1 1254497 R 596153 CDS YP_004125823.1 319761886 10103208 complement(1255303..1256316) 1 NC_014910.1 PFAM: extracellular solute-binding protein family 1; KEGG: vap:Vapar_1265 extracellular solute-binding protein family 1; ABC transporter substrate-binding protein 1256316 10103208 Alide_1174 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125823.1 1255303 R 596153 CDS YP_004125824.1 319761887 10103209 complement(1256356..1257378) 1 NC_014910.1 KEGG: vap:Vapar_1266 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; periplasmic-binding protein/LacI transcriptional regulator 1257378 10103209 Alide_1175 Alicycliphilus denitrificans BC periplasmic-binding protein/LacI transcriptional regulator YP_004125824.1 1256356 R 596153 CDS YP_004125825.1 319761888 10103210 complement(1257471..1257968) 1 NC_014910.1 TIGRFAM: lipoprotein signal peptidase; KEGG: dia:Dtpsy_2736 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase 1257968 10103210 Alide_1176 Alicycliphilus denitrificans BC lipoprotein signal peptidase YP_004125825.1 1257471 R 596153 CDS YP_004125826.1 319761889 10103211 complement(1257968..1260823) 1 NC_014910.1 KEGG: dia:Dtpsy_2735 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 1260823 10103211 Alide_1177 Alicycliphilus denitrificans BC isoleucyl-tRNA synthetase YP_004125826.1 1257968 R 596153 CDS YP_004125827.1 319761890 10103212 complement(1260914..1261960) 1 NC_014910.1 KEGG: ajs:Ajs_3398 bifunctional riboflavin kinase/FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein ribf 1261960 10103212 Alide_1178 Alicycliphilus denitrificans BC riboflavin biosynthesis protein ribf YP_004125827.1 1260914 R 596153 CDS YP_004125828.1 319761891 10103213 1262114..1262671 1 NC_014910.1 KEGG: dia:Dtpsy_2733 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; hnh endonuclease 1262671 10103213 Alide_1179 Alicycliphilus denitrificans BC hnh endonuclease YP_004125828.1 1262114 D 596153 CDS YP_004125829.1 319761892 10103214 complement(1262726..1263841) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2732 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 1263841 10103214 Alide_1180 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004125829.1 1262726 R 596153 CDS YP_004125830.1 319761893 10103215 complement(1263856..1265037) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2731 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 1265037 10103215 Alide_1181 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004125830.1 1263856 R 596153 CDS YP_004125831.1 319761894 10103216 complement(1265083..1265772) 1 NC_014910.1 PFAM: protein of unknown function DUF480; KEGG: ctt:CtCNB1_0874 hypothetical protein; hypothetical protein 1265772 10103216 Alide_1182 Alicycliphilus denitrificans BC hypothetical protein YP_004125831.1 1265083 R 596153 CDS YP_004125832.1 319761895 10103217 1265793..1266374 1 NC_014910.1 KEGG: dac:Daci_5372 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; phosphoribosylglycinamide formyltransferase 1266374 10103217 Alide_1183 Alicycliphilus denitrificans BC phosphoribosylglycinamide formyltransferase YP_004125832.1 1265793 D 596153 CDS YP_004125833.1 319761896 10103218 1266490..1267809 1 NC_014910.1 PFAM: Fmu (Sun) domain protein; KEGG: aav:Aave_3433 Fmu (Sun) domain-containing protein; fmu (sun) domain-containing protein 1267809 10103218 Alide_1184 Alicycliphilus denitrificans BC fmu (sun) domain-containing protein YP_004125833.1 1266490 D 596153 CDS YP_004125834.1 319761897 10103219 complement(1267921..1268091) 1 NC_014910.1 KEGG: dia:Dtpsy_2723 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; 50S ribosomal protein L33 1268091 10103219 Alide_1185 Alicycliphilus denitrificans BC 50S ribosomal protein L33 YP_004125834.1 1267921 R 596153 CDS YP_004125835.1 319761898 10103220 complement(1268112..1268345) 1 NC_014910.1 KEGG: ctt:CtCNB1_0883 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; 50S ribosomal protein L28 1268345 10103220 Alide_1186 Alicycliphilus denitrificans BC 50S ribosomal protein L28 YP_004125835.1 1268112 R 596153 CDS YP_004125836.1 319761899 10103221 complement(1268497..1269447) 1 NC_014910.1 manually curated; TIGRFAM: thioredoxin reductase; KEGG: dia:Dtpsy_2721 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 1269447 10103221 Alide_1187 Alicycliphilus denitrificans BC thioredoxin reductase YP_004125836.1 1268497 R 596153 CDS YP_004125837.1 319761900 10103222 1269592..1271928 1 NC_014910.1 PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: ajs:Ajs_3382 DNA translocase FtsK; DNA translocase FtsK 1271928 10103222 Alide_1188 Alicycliphilus denitrificans BC DNA translocase FtsK YP_004125837.1 1269592 D 596153 CDS YP_004125838.1 319761901 10103223 1271940..1272572 1 NC_014910.1 KEGG: ajs:Ajs_3381 outer membrane lipoprotein carrier protein LolA; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein lola 1272572 10103223 Alide_1189 Alicycliphilus denitrificans BC outer membrane lipoprotein carrier protein lola YP_004125838.1 1271940 D 596153 CDS YP_004125839.1 319761902 10103224 complement(1272576..1273532) 1 NC_014910.1 PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 1,4-dihydroxy-2-naphthoate octaprenyltransferase; ubia prenyltransferase 1273532 10103224 Alide_1190 Alicycliphilus denitrificans BC ubia prenyltransferase YP_004125839.1 1272576 R 596153 CDS YP_004125840.1 319761903 10103225 complement(1273555..1274157) 1 NC_014910.1 KEGG: dia:Dtpsy_2718 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase 1274157 10103225 Alide_1191 Alicycliphilus denitrificans BC uracil-DNA glycosylase YP_004125840.1 1273555 R 596153 CDS YP_004125841.1 319761904 10103226 1274198..1275511 1 NC_014910.1 KEGG: ajs:Ajs_3365 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; ATPase AAA 1275511 10103226 Alide_1192 Alicycliphilus denitrificans BC ATPase AAA YP_004125841.1 1274198 D 596153 CDS YP_004125842.1 319761905 10103227 1275710..1276639 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2712 inner-membrane translocator; inner-membrane translocator 1276639 10103227 Alide_1193 Alicycliphilus denitrificans BC inner-membrane translocator YP_004125842.1 1275710 D 596153 CDS YP_004125843.1 319761906 10103228 1276656..1277732 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2711 inner-membrane translocator; inner-membrane translocator 1277732 10103228 Alide_1194 Alicycliphilus denitrificans BC inner-membrane translocator YP_004125843.1 1276656 D 596153 CDS YP_004125844.1 319761907 10103229 1277754..1278536 1 NC_014910.1 KEGG: dia:Dtpsy_2710 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1278536 10103229 Alide_1195 Alicycliphilus denitrificans BC ABC transporter YP_004125844.1 1277754 D 596153 CDS YP_004125845.1 319761908 10103230 1278540..1279268 1 NC_014910.1 KEGG: ajs:Ajs_3361 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1279268 10103230 Alide_1196 Alicycliphilus denitrificans BC ABC transporter YP_004125845.1 1278540 D 596153 CDS YP_004125846.1 319761909 10103231 1279316..1279726 1 NC_014910.1 PFAM: protein of unknown function DUF486; KEGG: dia:Dtpsy_2708 protein of unknown function DUF486; hypothetical protein 1279726 10103231 Alide_1197 Alicycliphilus denitrificans BC hypothetical protein YP_004125846.1 1279316 D 596153 CDS YP_004125847.1 319761910 10103232 complement(1279765..1280361) 1 NC_014910.1 KEGG: aav:Aave_1879 OmpA domain-containing protein; ompa domain-containing protein 1280361 10103232 Alide_1198 Alicycliphilus denitrificans BC ompa domain-containing protein YP_004125847.1 1279765 R 596153 CDS YP_004125848.1 319761911 10103233 1280601..1281248 1 NC_014910.1 PFAM: Putitive phosphate transport regulator; KEGG: dia:Dtpsy_2707 protein of unknown function DUF47; phosphate transport regulator 1281248 10103233 Alide_1199 Alicycliphilus denitrificans BC phosphate transport regulator YP_004125848.1 1280601 D 596153 CDS YP_004125849.1 319761912 10103234 1281269..1282279 1 NC_014910.1 PFAM: phosphate transporter; KEGG: dia:Dtpsy_2706 phosphate transporter; phosphate transporter 1282279 10103234 Alide_1200 Alicycliphilus denitrificans BC phosphate transporter YP_004125849.1 1281269 D 596153 CDS YP_004125850.1 319761913 10103235 complement(1282333..1282779) 1 NC_014910.1 KEGG: dia:Dtpsy_2705 hypothetical protein; hypothetical protein 1282779 10103235 Alide_1201 Alicycliphilus denitrificans BC hypothetical protein YP_004125850.1 1282333 R 596153 CDS YP_004125851.1 319761914 10103236 complement(1282802..1283329) 1 NC_014910.1 KEGG: dia:Dtpsy_2704 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; phosphinothricin acetyltransferase 1283329 10103236 Alide_1202 Alicycliphilus denitrificans BC phosphinothricin acetyltransferase YP_004125851.1 1282802 R 596153 CDS YP_004125852.1 319761915 10103237 1283446..1283700 1 NC_014910.1 KEGG: dia:Dtpsy_2703 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; 30S ribosomal protein S16 1283700 10103237 Alide_1203 Alicycliphilus denitrificans BC 30S ribosomal protein S16 YP_004125852.1 1283446 D 596153 CDS YP_004125853.1 319761916 10103238 1283794..1284366 1 NC_014910.1 KEGG: dia:Dtpsy_2702 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; 16S rRNA-processing protein RimM 1284366 10103238 Alide_1204 Alicycliphilus denitrificans BC 16S rRNA-processing protein RimM YP_004125853.1 1283794 D 596153 CDS YP_004125854.1 319761917 10103239 1284374..1285141 1 NC_014910.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: ajs:Ajs_3353 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-n1)-methyltransferase 1285141 10103239 Alide_1205 Alicycliphilus denitrificans BC tRNA (guanine-n1)-methyltransferase YP_004125854.1 1284374 D 596153 CDS YP_004125855.1 319761918 10103240 1285261..1285647 1 NC_014910.1 KEGG: dac:Daci_5342 ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; 50S ribosomal protein L19 1285647 10103240 Alide_1206 Alicycliphilus denitrificans BC 50S ribosomal protein L19 YP_004125855.1 1285261 D 596153 CDS YP_004125856.1 319761919 10103241 1285758..1286441 1 NC_014910.1 PFAM: NUDIX hydrolase; KEGG: ajs:Ajs_3351 NUDIX hydrolase; nudix hydrolase 1286441 10103241 Alide_1207 Alicycliphilus denitrificans BC nudix hydrolase YP_004125856.1 1285758 D 596153 CDS YP_004125857.1 319761920 10103242 1286488..1287477 1 NC_014910.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: dia:Dtpsy_2698 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein cbib 1287477 10103242 Alide_1208 Alicycliphilus denitrificans BC cobalamin biosynthesis protein cbib YP_004125857.1 1286488 D 596153 CDS YP_004125858.1 319761921 10103243 1287553..1288635 1 NC_014910.1 KEGG: vap:Vapar_1479 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; histidinol-phosphate aminotransferase 1288635 10103243 Alide_1209 Alicycliphilus denitrificans BC histidinol-phosphate aminotransferase YP_004125858.1 1287553 D 596153 CDS YP_004125859.1 319761922 10103244 complement(1288642..1290300) 1 NC_014910.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pne:Pnec_1354 sulphate transporter; sulfate transporter 1290300 10103244 Alide_1210 Alicycliphilus denitrificans BC sulfate transporter YP_004125859.1 1288642 R 596153 CDS YP_004125860.1 319761923 10103245 complement(1290315..1291286) 1 NC_014910.1 KEGG: dia:Dtpsy_2697 ribosome small subunit-dependent GTPase A; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; ribosome small subunit-dependent gtpase a 1291286 10103245 Alide_1211 Alicycliphilus denitrificans BC ribosome small subunit-dependent gtpase a YP_004125860.1 1290315 R 596153 CDS YP_004125861.1 319761924 10103246 complement(1291296..1291634) 1 NC_014910.1 KEGG: dia:Dtpsy_2696 transcriptional coactivator/pterin dehydratase; manually curated; PFAM: transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 1291634 10103246 Alide_1212 Alicycliphilus denitrificans BC transcriptional coactivator/pterin dehydratase YP_004125861.1 1291296 R 596153 CDS YP_004125862.1 319761925 10103247 complement(1291631..1292923) 1 NC_014910.1 KEGG: dia:Dtpsy_2695 STE24 endopeptidase; PFAM: peptidase M48 Ste24p; ste24 endopeptidase 1292923 10103247 Alide_1213 Alicycliphilus denitrificans BC ste24 endopeptidase YP_004125862.1 1291631 R 596153 CDS YP_004125863.1 319761926 10103248 1292943..1293554 1 NC_014910.1 KEGG: dia:Dtpsy_2694 oligoribonuclease; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; exonuclease rnase t and DNA polymerase iii 1293554 10103248 Alide_1214 Alicycliphilus denitrificans BC exonuclease rnase t and DNA polymerase iii YP_004125863.1 1292943 D 596153 CDS YP_004125864.1 319761927 10103249 1293678..1294811 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: vap:Vapar_5221 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 1294811 10103249 Alide_1215 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125864.1 1293678 D 596153 CDS YP_004125865.1 319761928 10103250 1295078..1296832 1 NC_014910.1 KEGG: dia:Dtpsy_2693 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; dead/deah box helicase domain-containing protein 1296832 10103250 Alide_1216 Alicycliphilus denitrificans BC dead/deah box helicase domain-containing protein YP_004125865.1 1295078 D 596153 CDS YP_004125866.1 319761929 10103251 1296953..1298416 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_1895 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1298416 10103251 Alide_1217 Alicycliphilus denitrificans BC diguanylate cyclase YP_004125866.1 1296953 D 596153 CDS YP_004125867.1 319761930 10103252 complement(1298424..1299656) 1 NC_014910.1 KEGG: ajs:Ajs_3344 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter 1299656 10103252 Alide_1218 Alicycliphilus denitrificans BC Bcr/CflA subfamily drug resistance transporter YP_004125867.1 1298424 R 596153 CDS YP_004125868.1 319761931 10103253 complement(1299844..1300329) 1 NC_014910.1 PFAM: protein of unknown function DUF461; KEGG: dia:Dtpsy_2691 protein of unknown function DUF461; hypothetical protein 1300329 10103253 Alide_1219 Alicycliphilus denitrificans BC hypothetical protein YP_004125868.1 1299844 R 596153 CDS YP_004125869.1 319761932 10103254 complement(1300409..1300780) 1 NC_014910.1 KEGG: ajs:Ajs_3342 hypothetical protein; hypothetical protein 1300780 10103254 Alide_1220 Alicycliphilus denitrificans BC hypothetical protein YP_004125869.1 1300409 R 596153 CDS YP_004125870.1 319761933 10103255 complement(1300802..1301533) 1 NC_014910.1 KEGG: dia:Dtpsy_2689 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein 1301533 10103255 Alide_1221 Alicycliphilus denitrificans BC cyclic nucleotide-binding protein YP_004125870.1 1300802 R 596153 CDS YP_004125871.1 319761934 10103256 1301609..1303762 1 NC_014910.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dia:Dtpsy_2688 TonB-dependent receptor; tonb-dependent receptor 1303762 10103256 Alide_1222 Alicycliphilus denitrificans BC tonb-dependent receptor YP_004125871.1 1301609 D 596153 CDS YP_004125872.1 319761935 10103257 1303764..1304780 1 NC_014910.1 KEGG: dia:Dtpsy_2687 periplasmic component of ABC-type transport system; ABC transporter substrate-binding protein 1304780 10103257 Alide_1223 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125872.1 1303764 D 596153 CDS YP_004125873.1 319761936 10103258 1304777..1305583 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_2682 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1305583 10103258 Alide_1224 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125873.1 1304777 D 596153 CDS YP_004125874.1 319761937 10103259 1305603..1306463 1 NC_014910.1 KEGG: dia:Dtpsy_2681 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1306463 10103259 Alide_1225 Alicycliphilus denitrificans BC ABC transporter YP_004125874.1 1305603 D 596153 CDS YP_004125875.1 319761938 10103260 1306585..1307754 1 NC_014910.1 PFAM: NnrS family protein; KEGG: dia:Dtpsy_2680 NnrS family protein; nnrs family protein 1307754 10103260 Alide_1226 Alicycliphilus denitrificans BC nnrs family protein YP_004125875.1 1306585 D 596153 CDS YP_004125876.1 319761939 10103261 1308074..1310029 1 NC_014910.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: dia:Dtpsy_2686 TonB-dependent receptor plug; tonb-dependent receptor plug 1310029 10103261 Alide_1227 Alicycliphilus denitrificans BC tonb-dependent receptor plug YP_004125876.1 1308074 D 596153 CDS YP_004125877.1 319761940 10103262 1310081..1314148 1 NC_014910.1 KEGG: dia:Dtpsy_2685 cobaltochelatase; PFAM: CobN/magnesium chelatase; cobaltochelatase 1314148 10103262 Alide_1228 Alicycliphilus denitrificans BC cobaltochelatase YP_004125877.1 1310081 D 596153 CDS YP_004125878.1 319761941 10103263 1315038..1315634 1 NC_014910.1 KEGG: tdn:Suden_1229 hypothetical protein; hypothetical protein 1315634 10103263 Alide_1229 Alicycliphilus denitrificans BC hypothetical protein YP_004125878.1 1315038 D 596153 CDS YP_004125879.1 319761942 10103264 1315697..1316233 1 NC_014910.1 KEGG: dia:Dtpsy_2684 hypothetical protein; hypothetical protein 1316233 10103264 Alide_1230 Alicycliphilus denitrificans BC hypothetical protein YP_004125879.1 1315697 D 596153 CDS YP_004125880.1 319761943 10103265 1316230..1316553 1 NC_014910.1 PFAM: Protein of unknown function DUF2149; KEGG: dia:Dtpsy_2683 hypothetical protein; hypothetical protein 1316553 10103265 Alide_1231 Alicycliphilus denitrificans BC hypothetical protein YP_004125880.1 1316230 D 596153 CDS YP_004125881.1 319761944 10103267 complement(1316917..1317996) 1 NC_014910.1 KEGG: sgl:SG1173 phage integrase; hypothetical protein 1317996 10103267 Alide_1232 Alicycliphilus denitrificans BC hypothetical protein YP_004125881.1 1316917 R 596153 CDS YP_004125882.1 319761945 10103268 complement(1317980..1318255) 1 NC_014910.1 KEGG: aav:Aave_1735 hypothetical protein; hypothetical protein 1318255 10103268 Alide_1233 Alicycliphilus denitrificans BC hypothetical protein YP_004125882.1 1317980 R 596153 CDS YP_004125883.1 319761946 10103269 complement(1318258..1318716) 1 NC_014910.1 KEGG: pna:Pnap_2277 hypothetical protein; hypothetical protein 1318716 10103269 Alide_1234 Alicycliphilus denitrificans BC hypothetical protein YP_004125883.1 1318258 R 596153 CDS YP_004125884.1 319761947 10103270 complement(1318713..1318997) 1 NC_014910.1 KEGG: see:SNSL254_p_0061 hypothetical protein; hypothetical protein 1318997 10103270 Alide_1235 Alicycliphilus denitrificans BC hypothetical protein YP_004125884.1 1318713 R 596153 CDS YP_004125885.1 319761948 10103271 complement(1319004..1320149) 1 NC_014910.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: mlo:mlr7992 DNA modification methylase; c-5 cytosine-specific DNA methylase 1320149 10103271 Alide_1236 Alicycliphilus denitrificans BC c-5 cytosine-specific DNA methylase YP_004125885.1 1319004 R 596153 CDS YP_004125886.1 319761949 10103272 complement(1320190..1320402) 1 NC_014910.1 KEGG: rsh:Rsph17029_0652 hypothetical protein; hypothetical protein 1320402 10103272 Alide_1237 Alicycliphilus denitrificans BC hypothetical protein YP_004125886.1 1320190 R 596153 CDS YP_004125887.1 319761950 10103273 complement(1320399..1321055) 1 NC_014910.1 KEGG: amd:AMED_0550 exopolysaccharide biosynthesis protein; hypothetical protein 1321055 10103273 Alide_1238 Alicycliphilus denitrificans BC hypothetical protein YP_004125887.1 1320399 R 596153 CDS YP_004125888.1 319761951 10103274 complement(1321052..1321270) 1 NC_014910.1 KEGG: dac:Daci_2614 hypothetical protein; hypothetical protein 1321270 10103274 Alide_1239 Alicycliphilus denitrificans BC hypothetical protein YP_004125888.1 1321052 R 596153 CDS YP_004125889.1 319761952 10103275 complement(1321295..1321513) 1 NC_014910.1 KEGG: ang:An16g04440 hypothetical protein; hypothetical protein 1321513 10103275 Alide_1240 Alicycliphilus denitrificans BC hypothetical protein YP_004125889.1 1321295 R 596153 CDS YP_004125890.1 319761953 10103276 complement(1321519..1321791) 1 NC_014910.1 KEGG: pol:Bpro_2970 hypothetical protein; hypothetical protein 1321791 10103276 Alide_1241 Alicycliphilus denitrificans BC hypothetical protein YP_004125890.1 1321519 R 596153 CDS YP_004125891.1 319761954 10103277 complement(1321785..1323761) 1 NC_014910.1 PFAM: replication gene A; KEGG: dac:Daci_2615 replication gene A; replication protein a 1323761 10103277 Alide_1242 Alicycliphilus denitrificans BC replication protein a YP_004125891.1 1321785 R 596153 CDS YP_004125892.1 319761955 10103278 complement(1323765..1324058) 1 NC_014910.1 KEGG: dac:Daci_2616 hypothetical protein; hypothetical protein 1324058 10103278 Alide_1243 Alicycliphilus denitrificans BC hypothetical protein YP_004125892.1 1323765 R 596153 CDS YP_004125893.1 319761956 10103279 complement(1324213..1324371) 1 NC_014910.1 KEGG: amd:AMED_8985 hypothetical protein; hypothetical protein 1324371 10103279 Alide_1244 Alicycliphilus denitrificans BC hypothetical protein YP_004125893.1 1324213 R 596153 CDS YP_004125894.1 319761957 10103280 complement(1324362..1324787) 1 NC_014910.1 KEGG: rso:RSc1667 hypothetical protein; hypothetical protein 1324787 10103280 Alide_1245 Alicycliphilus denitrificans BC hypothetical protein YP_004125894.1 1324362 R 596153 CDS YP_004125895.1 319761958 10103281 complement(1324906..1325319) 1 NC_014910.1 PFAM: transcriptional activator Ogr/delta; KEGG: dac:Daci_2617 transcriptional activator Ogr/delta; transcriptional activator ogr/delta 1325319 10103281 Alide_1246 Alicycliphilus denitrificans BC transcriptional activator ogr/delta YP_004125895.1 1324906 R 596153 CDS YP_004125896.1 319761959 10103282 complement(1325359..1325628) 1 NC_014910.1 KEGG: pct:PC1_2629 hypothetical protein; hypothetical protein 1325628 10103282 Alide_1247 Alicycliphilus denitrificans BC hypothetical protein YP_004125896.1 1325359 R 596153 CDS YP_004125897.1 319761960 10103283 complement(1325631..1325846) 1 NC_014910.1 KEGG: aau:AAur_4085 transcriptional regulator; hypothetical protein 1325846 10103283 Alide_1248 Alicycliphilus denitrificans BC hypothetical protein YP_004125897.1 1325631 R 596153 CDS YP_004125898.1 319761961 10103284 complement(1325865..1326086) 1 NC_014910.1 KEGG: kse:Ksed_24630 capsular exopolysaccharide biosynthesis protein; hypothetical protein 1326086 10103284 Alide_1249 Alicycliphilus denitrificans BC hypothetical protein YP_004125898.1 1325865 R 596153 CDS YP_004125899.1 319761962 10103285 1326189..1326905 1 NC_014910.1 KEGG: aav:Aave_3589 phage repressor; manually curated; PFAM: Peptidase S24/S26A/S26B, conserved region; peptidase s24/s26a/s26b 1326905 10103285 Alide_1250 Alicycliphilus denitrificans BC peptidase s24/s26a/s26b YP_004125899.1 1326189 D 596153 CDS YP_004125900.1 319761963 10103286 1327010..1327720 1 NC_014910.1 KEGG: eic:NT01EI_3144 hypothetical protein; hypothetical protein 1327720 10103286 Alide_1251 Alicycliphilus denitrificans BC hypothetical protein YP_004125900.1 1327010 D 596153 CDS YP_004125901.1 319761964 10103287 complement(1328007..1328576) 1 NC_014910.1 KEGG: aav:Aave_1749 hypothetical protein; hypothetical protein 1328576 10103287 Alide_1252 Alicycliphilus denitrificans BC hypothetical protein YP_004125901.1 1328007 R 596153 CDS YP_004125902.1 319761965 10103288 complement(1328652..1329101) 1 NC_014910.1 PFAM: Protein of unknown function DUF2442; KEGG: avn:Avin_37320 hypothetical protein; hypothetical protein 1329101 10103288 Alide_1253 Alicycliphilus denitrificans BC hypothetical protein YP_004125902.1 1328652 R 596153 CDS YP_004125903.1 319761966 10103289 complement(1329098..1329328) 1 NC_014910.1 KEGG: eba:ebA5912 hypothetical protein; hypothetical protein 1329328 10103289 Alide_1254 Alicycliphilus denitrificans BC hypothetical protein YP_004125903.1 1329098 R 596153 CDS YP_004125904.1 319761967 10103290 complement(1329380..1330393) 1 NC_014910.1 KEGG: dac:Daci_2620 late control D family protein; late control d family protein 1330393 10103290 Alide_1255 Alicycliphilus denitrificans BC late control d family protein YP_004125904.1 1329380 R 596153 CDS YP_004125905.1 319761968 10103291 complement(1330393..1330836) 1 NC_014910.1 PFAM: P2 GpU family protein; KEGG: dac:Daci_2621 P2 GpU family protein; p2 gpu family protein 1330836 10103291 Alide_1256 Alicycliphilus denitrificans BC p2 gpu family protein YP_004125905.1 1330393 R 596153 CDS YP_004125906.1 319761969 10103292 complement(1330845..1333355) 1 NC_014910.1 KEGG: pna:Pnap_3313 TP901 family phage tail tape measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, tp901 family 1333355 10103292 Alide_1257 Alicycliphilus denitrificans BC phage tail tape measure protein, tp901 family YP_004125906.1 1330845 R 596153 CDS YP_004125907.1 319761970 10103293 complement(1333392..1333619) 1 NC_014910.1 KEGG: dsi:Dsim_GD23071 GD23071 gene product from transcript GD23071-RA; hypothetical protein 1333619 10103293 Alide_1258 Alicycliphilus denitrificans BC hypothetical protein YP_004125907.1 1333392 R 596153 CDS YP_004125908.1 319761971 10103294 complement(1333662..1333778) 1 NC_014910.1 PFAM: P2 GpE family protein; KEGG: dac:Daci_2623 P2 GpE family protein; p2 gpe family protein 1333778 10103294 Alide_1259 Alicycliphilus denitrificans BC p2 gpe family protein YP_004125908.1 1333662 R 596153 CDS YP_004125909.1 319761972 10103295 complement(1333787..1334146) 1 NC_014910.1 PFAM: tail E family protein; KEGG: dac:Daci_2624 tail E family protein; tail e family protein 1334146 10103295 Alide_1260 Alicycliphilus denitrificans BC tail e family protein YP_004125909.1 1333787 R 596153 CDS YP_004125910.1 319761973 10103296 complement(1334182..1334691) 1 NC_014910.1 KEGG: dac:Daci_2625 phage major tail tube protein; TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; phage major tail tube protein 1334691 10103296 Alide_1261 Alicycliphilus denitrificans BC phage major tail tube protein YP_004125910.1 1334182 R 596153 CDS YP_004125911.1 319761974 10103297 complement(1334717..1335913) 1 NC_014910.1 KEGG: dac:Daci_2626 tail sheath protein; tail sheath protein 1335913 10103297 Alide_1262 Alicycliphilus denitrificans BC tail sheath protein YP_004125911.1 1334717 R 596153 CDS YP_004125912.1 319761975 10103298 complement(1335929..1336171) 1 NC_014910.1 KEGG: hsm:HSM_0915 hypothetical protein; hypothetical protein 1336171 10103298 Alide_1263 Alicycliphilus denitrificans BC hypothetical protein YP_004125912.1 1335929 R 596153 CDS YP_004125913.1 319761976 10103299 complement(1336218..1336871) 1 NC_014910.1 KEGG: mag:amb0391 hypothetical protein; hypothetical protein 1336871 10103299 Alide_1264 Alicycliphilus denitrificans BC hypothetical protein YP_004125913.1 1336218 R 596153 CDS YP_004125914.1 319761977 10103300 complement(1336880..1337800) 1 NC_014910.1 KEGG: spv:SPH_1885 cell wall surface anchor family protein; hypothetical protein 1337800 10103300 Alide_1265 Alicycliphilus denitrificans BC hypothetical protein YP_004125914.1 1336880 R 596153 CDS YP_004125915.1 319761978 10103301 complement(1337801..1338439) 1 NC_014910.1 KEGG: mca:MCA2902 hypothetical protein; hypothetical protein 1338439 10103301 Alide_1266 Alicycliphilus denitrificans BC hypothetical protein YP_004125915.1 1337801 R 596153 CDS YP_004125916.1 319761979 10103302 complement(1338456..1340702) 1 NC_014910.1 KEGG: mca:MCA2904 hypothetical protein; hypothetical protein 1340702 10103302 Alide_1267 Alicycliphilus denitrificans BC hypothetical protein YP_004125916.1 1338456 R 596153 CDS YP_004125917.1 319761980 10103303 complement(1340708..1341919) 1 NC_014910.1 KEGG: mca:MCA2905 prophage MuMc02 tail fiber domain-containing protein; hypothetical protein 1341919 10103303 Alide_1268 Alicycliphilus denitrificans BC hypothetical protein YP_004125917.1 1340708 R 596153 CDS YP_004125918.1 319761981 10103304 complement(1341912..1342850) 1 NC_014910.1 PFAM: Baseplate J family protein; KEGG: dac:Daci_2635 baseplate J family protein; baseplate j family protein 1342850 10103304 Alide_1269 Alicycliphilus denitrificans BC baseplate j family protein YP_004125918.1 1341912 R 596153 CDS YP_004125919.1 319761982 10103305 complement(1342847..1343197) 1 NC_014910.1 PFAM: GPW/gp25 family protein; KEGG: dac:Daci_2636 gpW/GP25 family protein; gpw/gp25 family protein 1343197 10103305 Alide_1270 Alicycliphilus denitrificans BC gpw/gp25 family protein YP_004125919.1 1342847 R 596153 CDS YP_004125920.1 319761983 10103306 complement(1343194..1343790) 1 NC_014910.1 TIGRFAM: phage baseplate assembly protein V; KEGG: dac:Daci_2637 phage baseplate assembly protein V; phage baseplate assembly protein v 1343790 10103306 Alide_1271 Alicycliphilus denitrificans BC phage baseplate assembly protein v YP_004125920.1 1343194 R 596153 CDS YP_004125921.1 319761984 10103307 complement(1343867..1344343) 1 NC_014910.1 TIGRFAM: phage virion morphogenesis protein; KEGG: csa:Csal_1389 phage virion morphogenesis (tail completion) protein; phage virion morphogenesis protein 1344343 10103307 Alide_1272 Alicycliphilus denitrificans BC phage virion morphogenesis protein YP_004125921.1 1343867 R 596153 CDS YP_004125922.1 319761985 10103308 complement(1344318..1344464) 1 NC_014910.1 KEGG: vvi:100251070 hypothetical protein LOC100251070; hypothetical protein 1344464 10103308 Alide_1273 Alicycliphilus denitrificans BC hypothetical protein YP_004125922.1 1344318 R 596153 CDS YP_004125923.1 319761986 10103309 complement(1344443..1344934) 1 NC_014910.1 KEGG: dac:Daci_2638 P2 phage tail completion R family protein; p2 phage tail completion r family protein 1344934 10103309 Alide_1274 Alicycliphilus denitrificans BC p2 phage tail completion r family protein YP_004125923.1 1344443 R 596153 CDS YP_004125924.1 319761987 10103310 complement(1344918..1345466) 1 NC_014910.1 PFAM: Protein of unknown function DUF2514; KEGG: dac:Daci_2639 hypothetical protein; hypothetical protein 1345466 10103310 Alide_1275 Alicycliphilus denitrificans BC hypothetical protein YP_004125924.1 1344918 R 596153 CDS YP_004125925.1 319761988 10103311 complement(1345513..1345692) 1 NC_014910.1 KEGG: rlt:Rleg2_1424 major facilitator superfamily MFS_1; hypothetical protein 1345692 10103311 Alide_1276 Alicycliphilus denitrificans BC hypothetical protein YP_004125925.1 1345513 R 596153 CDS YP_004125926.1 319761989 10103312 complement(1345689..1346216) 1 NC_014910.1 PFAM: glycoside hydrolase family 24; KEGG: eba:ebA7232 phage-related lysozyme; glycoside hydrolase family protein 1346216 10103312 Alide_1277 Alicycliphilus denitrificans BC glycoside hydrolase family protein YP_004125926.1 1345689 R 596153 CDS YP_004125927.1 319761990 10103313 complement(1346207..1346443) 1 NC_014910.1 KEGG: dac:Daci_2641 hypothetical protein; hypothetical protein 1346443 10103313 Alide_1278 Alicycliphilus denitrificans BC hypothetical protein YP_004125927.1 1346207 R 596153 CDS YP_004125928.1 319761991 10103314 complement(1346450..1346653) 1 NC_014910.1 PFAM: tail X family protein; KEGG: dac:Daci_2642 tail X family protein; tail x family protein 1346653 10103314 Alide_1279 Alicycliphilus denitrificans BC tail x family protein YP_004125928.1 1346450 R 596153 CDS YP_004125929.1 319761992 10103315 complement(1346653..1347135) 1 NC_014910.1 PFAM: head completion protein; KEGG: bps:BPSL0168 phage head completion/stabilization protein; head completion protein 1347135 10103315 Alide_1280 Alicycliphilus denitrificans BC head completion protein YP_004125929.1 1346653 R 596153 CDS YP_004125930.1 319761993 10103316 complement(1347262..1347966) 1 NC_014910.1 PFAM: small terminase subunit; KEGG: pna:Pnap_3292 phage small terminase subunit; small terminase subunit 1347966 10103316 Alide_1281 Alicycliphilus denitrificans BC small terminase subunit YP_004125930.1 1347262 R 596153 CDS YP_004125931.1 319761994 10103317 complement(1348065..1349069) 1 NC_014910.1 KEGG: csa:Csal_1397 phage major capsid protein, P2; TIGRFAM: phage major capsid protein, P2 family; PFAM: major capsid protein P2; phage major capsid protein, p2 family 1349069 10103317 Alide_1282 Alicycliphilus denitrificans BC phage major capsid protein, p2 family YP_004125931.1 1348065 R 596153 CDS YP_004125932.1 319761995 10103318 complement(1349129..1349959) 1 NC_014910.1 PFAM: capsid scaffolding; KEGG: pfs:PFLU1589 capsid scafolding protein; capsid scaffolding 1349959 10103318 Alide_1283 Alicycliphilus denitrificans BC capsid scaffolding YP_004125932.1 1349129 R 596153 CDS YP_004125933.1 319761996 10103319 1350104..1352005 1 NC_014910.1 KEGG: pna:Pnap_3289 hypothetical protein; hypothetical protein 1352005 10103319 Alide_1284 Alicycliphilus denitrificans BC hypothetical protein YP_004125933.1 1350104 D 596153 CDS YP_004125934.1 319761997 10103320 1352008..1353099 1 NC_014910.1 KEGG: hse:Hsero_0910 bacteriophage capsid portal protein; TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein; phage portal protein, pbsx family 1353099 10103320 Alide_1285 Alicycliphilus denitrificans BC phage portal protein, pbsx family YP_004125934.1 1352008 D 596153 CDS YP_004125935.1 319761998 10103322 complement(1353726..1354703) 1 NC_014910.1 KEGG: aav:Aave_1911 guanosine 5'-monophosphate oxidoreductase; TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; guanosine monophosphate reductase 1354703 10103322 Alide_1286 Alicycliphilus denitrificans BC guanosine monophosphate reductase YP_004125935.1 1353726 R 596153 CDS YP_004125936.1 319761999 10103323 1354937..1357327 1 NC_014910.1 PFAM: UvrD/REP helicase; KEGG: dia:Dtpsy_2677 UvrD/REP helicase; UvrD/REP helicase 1357327 10103323 Alide_1287 Alicycliphilus denitrificans BC UvrD/REP helicase YP_004125936.1 1354937 D 596153 CDS YP_004125937.1 319762000 10103324 complement(1357349..1359298) 1 NC_014910.1 PFAM: protein of unknown function DUF839; KEGG: aav:Aave_1926 exported alkaline phosphatase; hypothetical protein 1359298 10103324 Alide_1288 Alicycliphilus denitrificans BC hypothetical protein YP_004125937.1 1357349 R 596153 CDS YP_004125938.1 319762001 10103325 1359566..1361182 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: dba:Dbac_1471 diguanylate cyclase; SMART: GGDEF domain containing protein; extracellular solute-binding protein family 3; diguanylate cyclase 1361182 10103325 Alide_1289 Alicycliphilus denitrificans BC diguanylate cyclase YP_004125938.1 1359566 D 596153 CDS YP_004125939.1 319762002 10103326 complement(1361195..1362016) 1 NC_014910.1 KEGG: ajs:Ajs_3321 hypothetical protein; hypothetical protein 1362016 10103326 Alide_1290 Alicycliphilus denitrificans BC hypothetical protein YP_004125939.1 1361195 R 596153 CDS YP_004125940.1 319762003 10103327 complement(1362063..1363013) 1 NC_014910.1 TIGRFAM: homoserine kinase; KEGG: ajs:Ajs_3320 homoserine kinase; PFAM: aminoglycoside phosphotransferase; homoserine kinase 1363013 10103327 Alide_1291 Alicycliphilus denitrificans BC homoserine kinase YP_004125940.1 1362063 R 596153 CDS YP_004125941.1 319762004 10103328 complement(1363091..1363456) 1 NC_014910.1 KEGG: dia:Dtpsy_2671 hypothetical protein; hypothetical protein 1363456 10103328 Alide_1292 Alicycliphilus denitrificans BC hypothetical protein YP_004125941.1 1363091 R 596153 CDS YP_004125942.1 319762005 10103329 complement(1363488..1363910) 1 NC_014910.1 KEGG: ajs:Ajs_3318 hypothetical protein; hypothetical protein 1363910 10103329 Alide_1293 Alicycliphilus denitrificans BC hypothetical protein YP_004125942.1 1363488 R 596153 CDS YP_004125943.1 319762006 10103330 1363992..1366757 1 NC_014910.1 SMART: DNA-directed DNA polymerase; 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; TIGRFAM: DNA polymerase I; KEGG: dia:Dtpsy_2669 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; DNA polymerase i 1366757 10103330 Alide_1294 Alicycliphilus denitrificans BC DNA polymerase i YP_004125943.1 1363992 D 596153 CDS YP_004125944.1 319762007 10103331 complement(1366774..1367703) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B1464 transcriptional regulator, LysR family; LysR family transcriptional regulator 1367703 10103331 Alide_1295 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125944.1 1366774 R 596153 CDS YP_004125945.1 319762008 10103332 1367780..1368595 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: afv:AFLA_059270 short-chain dehydrogenases/reductase, putative; short-chain dehydrogenase/reductase sdr 1368595 10103332 Alide_1296 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004125945.1 1367780 D 596153 CDS YP_004125946.1 319762009 10103333 1368791..1369759 1 NC_014910.1 KEGG: dac:Daci_0250 hypothetical protein; hypothetical protein 1369759 10103333 Alide_1297 Alicycliphilus denitrificans BC hypothetical protein YP_004125946.1 1368791 D 596153 CDS YP_004125947.1 319762010 10103334 1369779..1370303 1 NC_014910.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bpt:Bpet3546 hypothetical protein; carboxymuconolactone decarboxylase 1370303 10103334 Alide_1298 Alicycliphilus denitrificans BC carboxymuconolactone decarboxylase YP_004125947.1 1369779 D 596153 CDS YP_004125948.1 319762011 10103335 complement(1370311..1371306) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet4163 LysR family transcriptional regulator; LysR family transcriptional regulator 1371306 10103335 Alide_1299 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125948.1 1370311 R 596153 CDS YP_004125949.1 319762012 10103336 1371441..1372415 1 NC_014910.1 KEGG: bpt:Bpet4162 secreted protein; secreted protein 1372415 10103336 Alide_1300 Alicycliphilus denitrificans BC secreted protein YP_004125949.1 1371441 D 596153 CDS YP_004125950.1 319762013 10103337 1372443..1373636 1 NC_014910.1 KEGG: bpt:Bpet4161 acyl-CoA transferase/carnitine dehydratase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 1373636 10103337 Alide_1301 Alicycliphilus denitrificans BC formyl-CoA transferase YP_004125950.1 1372443 D 596153 CDS YP_004125951.1 319762014 10103338 1373660..1374424 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bpt:Bpet4160 enoyl-CoA hydratase; enoyl-CoA hydratase 1374424 10103338 Alide_1302 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004125951.1 1373660 D 596153 CDS YP_004125952.1 319762015 10103339 1374510..1375394 1 NC_014910.1 KEGG: dia:Dtpsy_2668 carboxymethylenebutenolidase; carboxymethylenebutenolidase 1375394 10103339 Alide_1303 Alicycliphilus denitrificans BC carboxymethylenebutenolidase YP_004125952.1 1374510 D 596153 CDS YP_004125953.1 319762016 10103340 1375505..1376323 1 NC_014910.1 PFAM: zinc/iron permease; KEGG: dia:Dtpsy_2667 zinc/iron permease; zinc/iron permease 1376323 10103340 Alide_1304 Alicycliphilus denitrificans BC zinc/iron permease YP_004125953.1 1375505 D 596153 CDS YP_004125954.1 319762017 10103341 complement(1376423..1377166) 1 NC_014910.1 KEGG: ajs:Ajs_3314 LytR/AlgR family transcriptional regulator; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; response regulator receiver 1377166 10103341 Alide_1305 Alicycliphilus denitrificans BC response regulator receiver YP_004125954.1 1376423 R 596153 CDS YP_004125955.1 319762018 10103342 complement(1377223..1377942) 1 NC_014910.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: dia:Dtpsy_2506 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase serb 1377942 10103342 Alide_1306 Alicycliphilus denitrificans BC phosphoserine phosphatase serb YP_004125955.1 1377223 R 596153 CDS YP_004125956.1 319762019 10103343 1378284..1380458 1 NC_014910.1 KEGG: ppw:PputW619_2172 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; Mannitol dehydrogenase domain; HAD-superfamily hydrolase 1380458 10103343 Alide_1307 Alicycliphilus denitrificans BC HAD-superfamily hydrolase YP_004125956.1 1378284 D 596153 CDS YP_004125957.1 319762020 10103344 complement(1380625..1381305) 1 NC_014910.1 KEGG: dia:Dtpsy_2505 hypothetical protein; hypothetical protein 1381305 10103344 Alide_1308 Alicycliphilus denitrificans BC hypothetical protein YP_004125957.1 1380625 R 596153 CDS YP_004125958.1 319762021 10103345 complement(1381312..1384803) 1 NC_014910.1 TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; KEGG: ajs:Ajs_3157 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor 1384803 10103345 Alide_1309 Alicycliphilus denitrificans BC transcription-repair coupling factor YP_004125958.1 1381312 R 596153 CDS YP_004125959.1 319762022 10103346 1384882..1385730 1 NC_014910.1 KEGG: dia:Dtpsy_2503 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1385730 10103346 Alide_1310 Alicycliphilus denitrificans BC 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004125959.1 1384882 D 596153 CDS YP_004125960.1 319762023 10103347 1385751..1386230 1 NC_014910.1 KEGG: dia:Dtpsy_2502 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1386230 10103347 Alide_1311 Alicycliphilus denitrificans BC 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_004125960.1 1385751 D 596153 CDS YP_004125961.1 319762024 10103348 complement(1386303..1387808) 1 NC_014910.1 KEGG: dia:Dtpsy_2501 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding domain-containing protein 1387808 10103348 Alide_1312 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004125961.1 1386303 R 596153 CDS YP_004125962.1 319762025 10103349 complement(1387881..1388612) 1 NC_014910.1 KEGG: dia:Dtpsy_2500 osmolarity response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 1388612 10103349 Alide_1313 Alicycliphilus denitrificans BC response regulator receiver YP_004125962.1 1387881 R 596153 CDS YP_004125963.1 319762026 10103350 1388809..1389537 1 NC_014910.1 PFAM: protein of unknown function DUF541; KEGG: dia:Dtpsy_2499 protein of unknown function DUF541; hypothetical protein 1389537 10103350 Alide_1314 Alicycliphilus denitrificans BC hypothetical protein YP_004125963.1 1388809 D 596153 CDS YP_004125964.1 319762027 10103351 complement(1389592..1390374) 1 NC_014910.1 KEGG: dia:Dtpsy_2498 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; 3-hydroxybutyrate dehydrogenase 1390374 10103351 Alide_1315 Alicycliphilus denitrificans BC 3-hydroxybutyrate dehydrogenase YP_004125964.1 1389592 R 596153 CDS YP_004125965.1 319762028 10103352 1390523..1391386 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_3150 alpha/beta hydrolase fold; alpha/beta hydrolase 1391386 10103352 Alide_1316 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004125965.1 1390523 D 596153 CDS YP_004125966.1 319762029 10103353 1391383..1393629 1 NC_014910.1 TIGRFAM: RelA/SpoT family protein; KEGG: ajs:Ajs_3149 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain-containing protein; amino acid-binding ACT domain protein; rela/spot family protein 1393629 10103353 Alide_1317 Alicycliphilus denitrificans BC rela/spot family protein YP_004125966.1 1391383 D 596153 CDS YP_004125967.1 319762030 10103355 1394168..1394383 1 NC_014910.1 KEGG: dia:Dtpsy_2387 hypothetical protein; hypothetical protein 1394383 10103355 Alide_1318 Alicycliphilus denitrificans BC hypothetical protein YP_004125967.1 1394168 D 596153 CDS YP_004125968.1 319762031 10103356 1394448..1394756 1 NC_014910.1 KEGG: dia:Dtpsy_2389 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; rnp-1 like RNA-binding protein 1394756 10103356 Alide_1319 Alicycliphilus denitrificans BC rnp-1 like RNA-binding protein YP_004125968.1 1394448 D 596153 CDS YP_004125969.1 319762032 10103357 1394949..1395488 1 NC_014910.1 KEGG: dia:Dtpsy_2495 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; polyhydroxyalkanoate synthesis repressor phar 1395488 10103357 Alide_1320 Alicycliphilus denitrificans BC polyhydroxyalkanoate synthesis repressor phar YP_004125969.1 1394949 D 596153 CDS YP_004125970.1 319762033 10103358 1395526..1396917 1 NC_014910.1 TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: dia:Dtpsy_2494 ribosomal protein S12 methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; miab-like tRNA modifying enzyme ylig 1396917 10103358 Alide_1321 Alicycliphilus denitrificans BC miab-like tRNA modifying enzyme ylig YP_004125970.1 1395526 D 596153 CDS YP_004125971.1 319762034 10103359 complement(1396975..1397334) 1 NC_014910.1 KEGG: dia:Dtpsy_2493 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type; peptidyl-prolyl isomerase 1397334 10103359 Alide_1322 Alicycliphilus denitrificans BC peptidyl-prolyl isomerase YP_004125971.1 1396975 R 596153 CDS YP_004125972.1 319762035 10103360 complement(1397450..1397755) 1 NC_014910.1 KEGG: dia:Dtpsy_2492 transcriptional regulator; transcriptional regulator 1397755 10103360 Alide_1323 Alicycliphilus denitrificans BC transcriptional regulator YP_004125972.1 1397450 R 596153 CDS YP_004125973.1 319762036 10103361 complement(1397907..1398836) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_3144 LysR family transcriptional regulator; LysR family transcriptional regulator 1398836 10103361 Alide_1324 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125973.1 1397907 R 596153 CDS YP_004125974.1 319762037 10103362 1398945..1399874 1 NC_014910.1 PFAM: pyruvate carboxyltransferase; KEGG: dia:Dtpsy_2490 pyruvate carboxyltransferase; pyruvate carboxyltransferase 1399874 10103362 Alide_1325 Alicycliphilus denitrificans BC pyruvate carboxyltransferase YP_004125974.1 1398945 D 596153 CDS YP_004125975.1 319762038 10103363 1399905..1401098 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_3142 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 1401098 10103363 Alide_1326 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004125975.1 1399905 D 596153 CDS YP_004125976.1 319762039 10103364 1401132..1402133 1 NC_014910.1 KEGG: dia:Dtpsy_2488 hypothetical protein; hypothetical protein 1402133 10103364 Alide_1327 Alicycliphilus denitrificans BC hypothetical protein YP_004125976.1 1401132 D 596153 CDS YP_004125977.1 319762040 10103365 complement(1402207..1403157) 1 NC_014910.1 TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: ajs:Ajs_3139 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 1403157 10103365 Alide_1328 Alicycliphilus denitrificans BC 2-dehydropantoate 2-reductase YP_004125977.1 1402207 R 596153 CDS YP_004125978.1 319762041 10103366 complement(1403204..1403887) 1 NC_014910.1 PFAM: methyladenine glycosylase; KEGG: neu:NE0447 hypothetical protein; methyladenine glycosylase 1403887 10103366 Alide_1329 Alicycliphilus denitrificans BC methyladenine glycosylase YP_004125978.1 1403204 R 596153 CDS YP_004125979.1 319762042 10103367 complement(1403919..1404026) 1 NC_014910.1 KEGG: rhi:NGR_b07690 hypothetical protein; hypothetical protein 1404026 10103367 Alide_1330 Alicycliphilus denitrificans BC hypothetical protein YP_004125979.1 1403919 R 596153 CDS YP_004125980.1 319762043 10103368 complement(1404153..1406561) 1 NC_014910.1 KEGG: dia:Dtpsy_2485 RNA polymerase, sigma 70 subunit, RpoD; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 1.1 domain protein; sigma-70 region 1.2; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; RNA polymerase sigma factor rpod 1406561 10103368 Alide_1331 Alicycliphilus denitrificans BC RNA polymerase sigma factor rpod YP_004125980.1 1404153 R 596153 CDS YP_004125981.1 319762044 10103369 complement(1406820..1408745) 1 NC_014910.1 TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; DNA primase, DnaB-helicase binding domain; KEGG: ajs:Ajs_3137 DNA primase; SMART: Toprim sub domain-containing protein; DNA primase 1408745 10103369 Alide_1332 Alicycliphilus denitrificans BC DNA primase YP_004125981.1 1406820 R 596153 CDS YP_004125982.1 319762045 10103370 1409085..1410731 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_2483 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 1410731 10103370 Alide_1333 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004125982.1 1409085 D 596153 CDS YP_004125983.1 319762046 10103371 complement(1410788..1412350) 1 NC_014910.1 KEGG: maq:Maqu_3283 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; phospholipase d/transphosphatidylase 1412350 10103371 Alide_1334 Alicycliphilus denitrificans BC phospholipase d/transphosphatidylase YP_004125983.1 1410788 R 596153 CDS YP_004125984.1 319762047 10103372 complement(1412347..1413486) 1 NC_014910.1 PFAM: regulatory protein LysR; KEGG: ajs:Ajs_3130 molybdate metabolism transcriptional regulator; LysR family transcriptional regulator 1413486 10103372 Alide_1335 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004125984.1 1412347 R 596153 CDS YP_004125985.1 319762048 10103373 1413537..1414271 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3129 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1414271 10103373 Alide_1336 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004125985.1 1413537 D 596153 CDS YP_004125986.1 319762049 10103374 1414268..1415044 1 NC_014910.1 KEGG: ajs:Ajs_3128 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1415044 10103374 Alide_1337 Alicycliphilus denitrificans BC ABC transporter YP_004125986.1 1414268 D 596153 CDS YP_004125987.1 319762050 10103375 1415041..1415868 1 NC_014910.1 PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_3127 extracellular solute-binding protein; ABC transporter substrate-binding protein 1415868 10103375 Alide_1338 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125987.1 1415041 D 596153 CDS YP_004125988.1 319762051 10103376 complement(1415889..1416818) 1 NC_014910.1 KEGG: pna:Pnap_0462 hypothetical protein; hypothetical protein 1416818 10103376 Alide_1339 Alicycliphilus denitrificans BC hypothetical protein YP_004125988.1 1415889 R 596153 CDS YP_004125989.1 319762052 10103377 complement(1416933..1418009) 1 NC_014910.1 TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain-containing protein; KEGG: ajs:Ajs_3126 molybdate ABC transporter, ATPase subunit; SMART: AAA ATPase; molybdate ABC transporter atpase subunit 1418009 10103377 Alide_1340 Alicycliphilus denitrificans BC molybdate ABC transporter atpase subunit YP_004125989.1 1416933 R 596153 CDS YP_004125990.1 319762053 10103378 complement(1418006..1418689) 1 NC_014910.1 KEGG: ajs:Ajs_3125 molybdate ABC transporter, inner membrane subunit; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit 1418689 10103378 Alide_1341 Alicycliphilus denitrificans BC molybdate ABC transporter inner membrane subunit YP_004125990.1 1418006 R 596153 CDS YP_004125991.1 319762054 10103379 complement(1418783..1419547) 1 NC_014910.1 KEGG: dia:Dtpsy_2470 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; molybdenum ABC transporter periplasmic molybdate-binding protein 1419547 10103379 Alide_1342 Alicycliphilus denitrificans BC molybdenum ABC transporter periplasmic molybdate-binding protein YP_004125991.1 1418783 R 596153 CDS YP_004125992.1 319762055 10103380 1419614..1420405 1 NC_014910.1 PFAM: TOBE domain-containing protein; regulatory protein LysR; KEGG: dia:Dtpsy_2469 transcriptional regulator, ModE family; tobe domain-containing protein 1420405 10103380 Alide_1343 Alicycliphilus denitrificans BC tobe domain-containing protein YP_004125992.1 1419614 D 596153 CDS YP_004125993.1 319762056 10103381 1420568..1421338 1 NC_014910.1 KEGG: dia:Dtpsy_2468 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1421338 10103381 Alide_1344 Alicycliphilus denitrificans BC ABC transporter YP_004125993.1 1420568 D 596153 CDS YP_004125994.1 319762057 10103382 1421340..1422050 1 NC_014910.1 KEGG: ajs:Ajs_3121 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1422050 10103382 Alide_1345 Alicycliphilus denitrificans BC ABC transporter YP_004125994.1 1421340 D 596153 CDS YP_004125995.1 319762058 10103383 1422100..1423302 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2466 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 1423302 10103383 Alide_1346 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125995.1 1422100 D 596153 CDS YP_004125996.1 319762059 10103384 1423374..1424573 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3119 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 1424573 10103384 Alide_1347 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004125996.1 1423374 D 596153 CDS YP_004125997.1 319762060 10103385 1424620..1425504 1 NC_014910.1 KEGG: dia:Dtpsy_2464 inner-membrane translocator; manually curated; PFAM: inner-membrane translocator; inner-membrane translocator 1425504 10103385 Alide_1348 Alicycliphilus denitrificans BC inner-membrane translocator YP_004125997.1 1424620 D 596153 CDS YP_004125998.1 319762061 10103386 1425523..1426524 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2463 inner-membrane translocator; inner-membrane translocator 1426524 10103386 Alide_1349 Alicycliphilus denitrificans BC inner-membrane translocator YP_004125998.1 1425523 D 596153 CDS YP_004125999.1 319762062 10103387 complement(1426580..1427674) 1 NC_014910.1 KEGG: ajs:Ajs_3116 secreted hydrolase-like protein; secreted hydrolase-like protein 1427674 10103387 Alide_1350 Alicycliphilus denitrificans BC secreted hydrolase-like protein YP_004125999.1 1426580 R 596153 CDS YP_004126000.1 319762063 10103388 complement(1427671..1428741) 1 NC_014910.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ajs:Ajs_3115 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 1428741 10103388 Alide_1351 Alicycliphilus denitrificans BC pyridoxal-5'-phosphate-dependent protein subunit beta YP_004126000.1 1427671 R 596153 CDS YP_004126001.1 319762064 10103389 complement(1428760..1431399) 1 NC_014910.1 PFAM: protein of unknown function DUF214; KEGG: dia:Dtpsy_2460 protein of unknown function DUF214; hypothetical protein 1431399 10103389 Alide_1352 Alicycliphilus denitrificans BC hypothetical protein YP_004126001.1 1428760 R 596153 CDS YP_004126002.1 319762065 10103390 1431532..1431960 1 NC_014910.1 PFAM: heat shock protein Hsp20; KEGG: ajs:Ajs_3113 heat shock protein HSP20; heat shock protein Hsp20 1431960 10103390 Alide_1353 Alicycliphilus denitrificans BC heat shock protein Hsp20 YP_004126002.1 1431532 D 596153 CDS YP_004126003.1 319762066 10103391 complement(1431970..1432641) 1 NC_014910.1 KEGG: dia:Dtpsy_2458 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1432641 10103391 Alide_1354 Alicycliphilus denitrificans BC ABC transporter YP_004126003.1 1431970 R 596153 CDS YP_004126004.1 319762067 10103392 complement(1432703..1433665) 1 NC_014910.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dia:Dtpsy_2457 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1433665 10103392 Alide_1355 Alicycliphilus denitrificans BC tRNA delta(2)-isopentenylpyrophosphate transferase YP_004126004.1 1432703 R 596153 CDS YP_004126005.1 319762068 10103393 complement(1433655..1434623) 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3110 Bcr/CflA subfamily drug resistance transporter; major facilitator superfamily protein 1434623 10103393 Alide_1356 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004126005.1 1433655 R 596153 CDS YP_004126006.1 319762069 10103394 1434805..1435749 1 NC_014910.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dia:Dtpsy_2455 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 1435749 10103394 Alide_1357 Alicycliphilus denitrificans BC d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein YP_004126006.1 1434805 D 596153 CDS YP_004126007.1 319762070 10103395 complement(1435746..1436183) 1 NC_014910.1 PFAM: histidine triad (HIT) protein; KEGG: dia:Dtpsy_2454 histidine triad (HIT) protein; histidine triad (hit) protein 1436183 10103395 Alide_1358 Alicycliphilus denitrificans BC histidine triad (hit) protein YP_004126007.1 1435746 R 596153 CDS YP_004126008.1 319762071 10103396 complement(1436293..1437315) 1 NC_014910.1 PFAM: porin Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type; porin 1437315 10103396 Alide_1359 Alicycliphilus denitrificans BC porin YP_004126008.1 1436293 R 596153 CDS YP_004126009.1 319762072 10103397 1437563..1438186 1 NC_014910.1 KEGG: dia:Dtpsy_2451 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding protein 1438186 10103397 Alide_1360 Alicycliphilus denitrificans BC cyclic nucleotide-binding protein YP_004126009.1 1437563 D 596153 CDS YP_004126010.1 319762073 10103398 1438472..1440568 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: dia:Dtpsy_2450 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase 1440568 10103398 Alide_1361 Alicycliphilus denitrificans BC diguanylate cyclase YP_004126010.1 1438472 D 596153 CDS YP_004126011.1 319762074 10103399 1440705..1442294 1 NC_014910.1 KEGG: dia:Dtpsy_2447 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1442294 10103399 Alide_1362 Alicycliphilus denitrificans BC ABC transporter YP_004126011.1 1440705 D 596153 CDS YP_004126012.1 319762075 10103400 1442281..1443354 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2446 inner-membrane translocator; inner-membrane translocator 1443354 10103400 Alide_1363 Alicycliphilus denitrificans BC inner-membrane translocator YP_004126012.1 1442281 D 596153 CDS YP_004126013.1 319762076 10103401 1443354..1444274 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2445 inner-membrane translocator; inner-membrane translocator 1444274 10103401 Alide_1364 Alicycliphilus denitrificans BC inner-membrane translocator YP_004126013.1 1443354 D 596153 CDS YP_004126014.1 319762077 10103402 1444297..1445442 1 NC_014910.1 PFAM: basic membrane lipoprotein; KEGG: dia:Dtpsy_2444 basic membrane lipoprotein; basic membrane lipoprotein 1445442 10103402 Alide_1365 Alicycliphilus denitrificans BC basic membrane lipoprotein YP_004126014.1 1444297 D 596153 CDS YP_004126015.1 319762078 10103403 1445483..1446649 1 NC_014910.1 PFAM: basic membrane lipoprotein; KEGG: dia:Dtpsy_2443 basic membrane lipoprotein; basic membrane lipoprotein 1446649 10103403 Alide_1366 Alicycliphilus denitrificans BC basic membrane lipoprotein YP_004126015.1 1445483 D 596153 CDS YP_004126016.1 319762079 10103404 complement(1446700..1447998) 1 NC_014910.1 PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc3407 oxidoreductase protein; FAD-dependent oxidoreductase 1447998 10103404 Alide_1367 Alicycliphilus denitrificans BC FAD-dependent oxidoreductase YP_004126016.1 1446700 R 596153 CDS YP_004126017.1 319762080 10103405 complement(1447995..1448741) 1 NC_014910.1 KEGG: rso:RSc3408 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1448741 10103405 Alide_1368 Alicycliphilus denitrificans BC ABC transporter YP_004126017.1 1447995 R 596153 CDS YP_004126018.1 319762081 10103406 complement(1448738..1449403) 1 NC_014910.1 KEGG: rso:RSc3409 amino-acid transmembrane ABC transporter protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1449403 10103406 Alide_1369 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004126018.1 1448738 R 596153 CDS YP_004126019.1 319762082 10103407 complement(1449430..1450200) 1 NC_014910.1 KEGG: rsl:RPSI07_0031 amino acid-binding periplasmic (Pbp) abc transporter protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 1450200 10103407 Alide_1370 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004126019.1 1449430 R 596153 CDS YP_004126020.1 319762083 10103408 1450404..1451198 1 NC_014910.1 KEGG: rso:RSc3411 transcription regulator protein; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; transcriptional regulator iclr 1451198 10103408 Alide_1371 Alicycliphilus denitrificans BC transcriptional regulator iclr YP_004126020.1 1450404 D 596153 CDS YP_004126021.1 319762084 10103409 1451237..1451590 1 NC_014910.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: reu:Reut_C6271 hypothetical protein; hypothetical protein 1451590 10103409 Alide_1372 Alicycliphilus denitrificans BC hypothetical protein YP_004126021.1 1451237 D 596153 CDS YP_004126022.1 319762085 10103410 1451683..1452735 1 NC_014910.1 TIGRFAM: adenosine deaminase; KEGG: dia:Dtpsy_2442 adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 1452735 10103410 Alide_1373 Alicycliphilus denitrificans BC adenosine deaminase YP_004126022.1 1451683 D 596153 CDS YP_004126023.1 319762086 10103411 complement(1452741..1454048) 1 NC_014910.1 KEGG: bav:BAV1558 acyl coenzyme A thioester hydrolase; PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; palmitoyl-CoA hydrolase 1454048 10103411 Alide_1374 Alicycliphilus denitrificans BC palmitoyl-CoA hydrolase YP_004126023.1 1452741 R 596153 CDS YP_004126024.1 319762087 10103412 complement(1454048..1455616) 1 NC_014910.1 PFAM: extracellular solute-binding protein family 5; KEGG: bav:BAV1559 ABC transporter, substrate binding protein; ABC transporter substrate-binding protein 1455616 10103412 Alide_1375 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004126024.1 1454048 R 596153 CDS YP_004126025.1 319762088 10103413 complement(1455740..1456735) 1 NC_014910.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: rsl:RPSI07_1508 dipeptide transport ATP-binding (ABC superfamily); SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1456735 10103413 Alide_1376 Alicycliphilus denitrificans BC oligopeptide/dipeptide ABC transporter ATPase YP_004126025.1 1455740 R 596153 CDS YP_004126026.1 319762089 10103414 complement(1456732..1457706) 1 NC_014910.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: rpf:Rpic12D_1762 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1457706 10103414 Alide_1377 Alicycliphilus denitrificans BC oligopeptide/dipeptide ABC transporter ATPase YP_004126026.1 1456732 R 596153 CDS YP_004126027.1 319762090 10103415 complement(1457703..1458602) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1562 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1458602 10103415 Alide_1378 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004126027.1 1457703 R 596153 CDS YP_004126028.1 319762091 10103416 complement(1458599..1459573) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1563 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1459573 10103416 Alide_1379 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004126028.1 1458599 R 596153 CDS YP_004126029.1 319762092 10103417 complement(1459570..1460568) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rsc:RCFBP_11452 transcriptional regulator, LysR family; LysR family transcriptional regulator 1460568 10103417 Alide_1380 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126029.1 1459570 R 596153 CDS YP_004126030.1 319762093 10103418 complement(1460751..1461398) 1 NC_014910.1 TIGRFAM: arylformamidase; KEGG: dia:Dtpsy_2438 arylformamidase; PFAM: cyclase family protein; arylformamidase 1461398 10103418 Alide_1381 Alicycliphilus denitrificans BC arylformamidase YP_004126030.1 1460751 R 596153 CDS YP_004126031.1 319762094 10103419 complement(1461400..1461723) 1 NC_014910.1 PFAM: protein of unknown function UPF0153; KEGG: dia:Dtpsy_2436 protein of unknown function UPF0153; hypothetical protein 1461723 10103419 Alide_1382 Alicycliphilus denitrificans BC hypothetical protein YP_004126031.1 1461400 R 596153 CDS YP_004126032.1 319762095 10103420 1461843..1462142 1 NC_014910.1 PFAM: FeoA family protein; KEGG: dia:Dtpsy_2435 FeoA family protein; feoa family protein 1462142 10103420 Alide_1383 Alicycliphilus denitrificans BC feoa family protein YP_004126032.1 1461843 D 596153 CDS YP_004126033.1 319762096 10103421 1462139..1464079 1 NC_014910.1 KEGG: dia:Dtpsy_2434 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein; ferrous iron transport protein B 1464079 10103421 Alide_1384 Alicycliphilus denitrificans BC ferrous iron transport protein B YP_004126033.1 1462139 D 596153 CDS YP_004126034.1 319762097 10103422 1464081..1464326 1 NC_014910.1 KEGG: dac:Daci_2177 hypothetical protein; hypothetical protein 1464326 10103422 Alide_1385 Alicycliphilus denitrificans BC hypothetical protein YP_004126034.1 1464081 D 596153 CDS YP_004126035.1 319762098 10103423 complement(1464386..1464733) 1 NC_014910.1 PFAM: protein of unknown function UPF0153; KEGG: ajs:Ajs_3004 hypothetical protein; hypothetical protein 1464733 10103423 Alide_1386 Alicycliphilus denitrificans BC hypothetical protein YP_004126035.1 1464386 R 596153 CDS YP_004126036.1 319762099 10103424 1464833..1465042 1 NC_014910.1 KEGG: pde:Pden_4005 hypothetical protein; hypothetical protein 1465042 10103424 Alide_1387 Alicycliphilus denitrificans BC hypothetical protein YP_004126036.1 1464833 D 596153 CDS YP_004126037.1 319762100 10103425 1465049..1465582 1 NC_014910.1 KEGG: bbr:BB2477 hypothetical protein; hypothetical protein 1465582 10103425 Alide_1388 Alicycliphilus denitrificans BC hypothetical protein YP_004126037.1 1465049 D 596153 CDS YP_004126038.1 319762101 10103426 complement(1465907..1466827) 1 NC_014910.1 TIGRFAM: ornithine carbamoyltransferase; KEGG: dia:Dtpsy_2430 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; ornithine carbamoyltransferase 1466827 10103426 Alide_1389 Alicycliphilus denitrificans BC ornithine carbamoyltransferase YP_004126038.1 1465907 R 596153 CDS YP_004126039.1 319762102 10103427 complement(1466844..1468040) 1 NC_014910.1 KEGG: dia:Dtpsy_2429 acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; acetylornithine and succinylornithine aminotransferase 1468040 10103427 Alide_1390 Alicycliphilus denitrificans BC acetylornithine and succinylornithine aminotransferase YP_004126039.1 1466844 R 596153 CDS YP_004126040.1 319762103 10103428 1468278..1468592 1 NC_014910.1 KEGG: dia:Dtpsy_2428 hypothetical protein; hypothetical protein 1468592 10103428 Alide_1391 Alicycliphilus denitrificans BC hypothetical protein YP_004126040.1 1468278 D 596153 CDS YP_004126041.1 319762104 10103429 complement(1468636..1469181) 1 NC_014910.1 manually curated; KEGG: vap:Vapar_5710 hypothetical protein; hypothetical protein 1469181 10103429 Alide_1392 Alicycliphilus denitrificans BC hypothetical protein YP_004126041.1 1468636 R 596153 CDS YP_004126042.1 319762105 10103430 complement(1469213..1469701) 1 NC_014910.1 KEGG: rfr:Rfer_0842 hypothetical protein; hypothetical protein 1469701 10103430 Alide_1393 Alicycliphilus denitrificans BC hypothetical protein YP_004126042.1 1469213 R 596153 CDS YP_004126043.1 319762106 10103431 complement(1470142..1470441) 1 NC_014910.1 KEGG: dia:Dtpsy_2427 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; 30S ribosomal protein S20 1470441 10103431 Alide_1394 Alicycliphilus denitrificans BC 30S ribosomal protein S20 YP_004126043.1 1470142 R 596153 CDS YP_004126044.1 319762107 10103432 1470546..1472111 1 NC_014910.1 KEGG: ajs:Ajs_2999 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; integral membrane protein mvin 1472111 10103432 Alide_1395 Alicycliphilus denitrificans BC integral membrane protein mvin YP_004126044.1 1470546 D 596153 CDS YP_004126045.1 319762108 10103433 1472128..1472976 1 NC_014910.1 KEGG: ajs:Ajs_2998 hypothetical protein; hypothetical protein 1472976 10103433 Alide_1396 Alicycliphilus denitrificans BC hypothetical protein YP_004126045.1 1472128 D 596153 CDS YP_004126046.1 319762109 10103434 complement(1472978..1473373) 1 NC_014910.1 PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_2423 UspA domain protein; uspa domain-containing protein 1473373 10103434 Alide_1397 Alicycliphilus denitrificans BC uspa domain-containing protein YP_004126046.1 1472978 R 596153 CDS YP_004126047.1 319762110 10103435 complement(1473605..1474690) 1 NC_014910.1 KEGG: dia:Dtpsy_2422 hypothetical protein; hypothetical protein 1474690 10103435 Alide_1398 Alicycliphilus denitrificans BC hypothetical protein YP_004126047.1 1473605 R 596153 CDS YP_004126048.1 319762111 10103436 complement(1474724..1475764) 1 NC_014910.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: ajs:Ajs_2994 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase 1475764 10103436 Alide_1399 Alicycliphilus denitrificans BC phosphoribosylformylglycinamidine cyclo-ligase YP_004126048.1 1474724 R 596153 CDS YP_004126049.1 319762112 10103437 complement(1475921..1477873) 1 NC_014910.1 TIGRFAM: gamma-glutamyltransferase; KEGG: aci:ACIAD0929 gamma-glutamyltranspeptidase precursor; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1477873 10103437 Alide_1400 Alicycliphilus denitrificans BC gamma-glutamyltransferase YP_004126049.1 1475921 R 596153 CDS YP_004126050.1 319762113 10103438 1478196..1478903 1 NC_014910.1 KEGG: aav:Aave_1971 chromosomal replication initiator, DnaA; TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; dnaa regulatory inactivator hda 1478903 10103438 Alide_1401 Alicycliphilus denitrificans BC dnaa regulatory inactivator hda YP_004126050.1 1478196 D 596153 CDS YP_004126051.1 319762114 10103439 1478900..1479574 1 NC_014910.1 KEGG: dia:Dtpsy_2419 HAD-superfamily subfamily IB hydrolase, TIGR01490; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; had-superfamily subfamily ib hydrolase, tigr01490 1479574 10103439 Alide_1402 Alicycliphilus denitrificans BC had-superfamily subfamily ib hydrolase, tigr01490 YP_004126051.1 1478900 D 596153 CDS YP_004126052.1 319762115 10103440 1479571..1481139 1 NC_014910.1 KEGG: dia:Dtpsy_2418 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 1481139 10103440 Alide_1403 Alicycliphilus denitrificans BC poly(A) polymerase YP_004126052.1 1479571 D 596153 CDS YP_004126053.1 319762116 10103441 1481136..1481654 1 NC_014910.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: ajs:Ajs_2990 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1481654 10103441 Alide_1404 Alicycliphilus denitrificans BC 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_004126053.1 1481136 D 596153 CDS YP_004126054.1 319762117 10103442 1481850..1482830 1 NC_014910.1 PFAM: glycosyl transferase family 2; KEGG: bav:BAV2928 bactoprenol glucosyl transferase; family 2 glycosyl transferase 1482830 10103442 Alide_1405 Alicycliphilus denitrificans BC family 2 glycosyl transferase YP_004126054.1 1481850 D 596153 CDS YP_004126055.1 319762118 10103443 1482827..1484404 1 NC_014910.1 PFAM: glycosyl transferase family 39; KEGG: dac:Daci_2190 glycosyl transferase family protein; glycosyl transferase family protein 1484404 10103443 Alide_1406 Alicycliphilus denitrificans BC glycosyl transferase family protein YP_004126055.1 1482827 D 596153 CDS YP_004126056.1 319762119 10103444 complement(1484352..1484762) 1 NC_014910.1 PFAM: GtrA family protein; KEGG: dar:Daro_2757 GtrA-like protein; gtra family protein 1484762 10103444 Alide_1407 Alicycliphilus denitrificans BC gtra family protein YP_004126056.1 1484352 R 596153 CDS YP_004126057.1 319762120 10103445 1484781..1485635 1 NC_014910.1 PFAM: YdjC family protein; KEGG: vap:Vapar_5574 YdjC family protein; hypothetical protein 1485635 10103445 Alide_1408 Alicycliphilus denitrificans BC hypothetical protein YP_004126057.1 1484781 D 596153 CDS YP_004126058.1 319762121 10103446 complement(1485693..1486664) 1 NC_014910.1 KEGG: ajs:Ajs_2989 hypothetical protein; hypothetical protein 1486664 10103446 Alide_1409 Alicycliphilus denitrificans BC hypothetical protein YP_004126058.1 1485693 R 596153 CDS YP_004126059.1 319762122 10103447 complement(1486714..1487697) 1 NC_014910.1 KEGG: reu:Reut_B5440 hypothetical protein; hypothetical protein 1487697 10103447 Alide_1410 Alicycliphilus denitrificans BC hypothetical protein YP_004126059.1 1486714 R 596153 CDS YP_004126060.1 319762123 10103448 complement(1487750..1488760) 1 NC_014910.1 KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase; uroporphyrinogen decarboxylase 1488760 10103448 Alide_1411 Alicycliphilus denitrificans BC uroporphyrinogen decarboxylase YP_004126060.1 1487750 R 596153 CDS YP_004126061.1 319762124 10103449 complement(1488971..1489888) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reu:Reut_B5443 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 1489888 10103449 Alide_1412 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126061.1 1488971 R 596153 CDS YP_004126062.1 319762125 10103450 1490005..1491153 1 NC_014910.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: hch:HCH_06702 cysteine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 1491153 10103450 Alide_1413 Alicycliphilus denitrificans BC pyridoxal-5'-phosphate-dependent protein subunit beta YP_004126062.1 1490005 D 596153 CDS YP_004126063.1 319762126 10103451 complement(1491160..1492221) 1 NC_014910.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: dia:Dtpsy_2414 CDP-6-deoxy-delta-3,4-glucoseen reductase; oxidoreductase fad/nad(p)-binding domain-containing protein 1492221 10103451 Alide_1414 Alicycliphilus denitrificans BC oxidoreductase fad/nad(p)-binding domain-containing protein YP_004126063.1 1491160 R 596153 CDS YP_004126064.1 319762127 10103452 1492290..1493231 1 NC_014910.1 PFAM: TrkA-N domain protein; KEGG: ajs:Ajs_2986 NAD-dependent epimerase/dehydratase; TrkA domain-containing protein 1493231 10103452 Alide_1415 Alicycliphilus denitrificans BC TrkA domain-containing protein YP_004126064.1 1492290 D 596153 CDS YP_004126065.1 319762128 10103453 complement(1493219..1493851) 1 NC_014910.1 KEGG: dia:Dtpsy_2412 hypothetical protein; hypothetical protein 1493851 10103453 Alide_1416 Alicycliphilus denitrificans BC hypothetical protein YP_004126065.1 1493219 R 596153 CDS YP_004126066.1 319762129 10103454 complement(1493886..1494410) 1 NC_014910.1 KEGG: dia:Dtpsy_2411 hypothetical protein; hypothetical protein 1494410 10103454 Alide_1417 Alicycliphilus denitrificans BC hypothetical protein YP_004126066.1 1493886 R 596153 CDS YP_004126067.1 319762130 10103455 1494538..1495626 1 NC_014910.1 KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein; transposase is4 family protein 1495626 10103455 Alide_1418 Alicycliphilus denitrificans BC transposase is4 family protein YP_004126067.1 1494538 D 596153 CDS YP_004126068.1 319762131 10103456 complement(1495938..1496906) 1 NC_014910.1 KEGG: ajs:Ajs_2981 hypothetical protein; hypothetical protein 1496906 10103456 Alide_1419 Alicycliphilus denitrificans BC hypothetical protein YP_004126068.1 1495938 R 596153 CDS YP_004126069.1 319762132 10103457 complement(1496975..1498216) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dia:Dtpsy_2408 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 1498216 10103457 Alide_1420 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004126069.1 1496975 R 596153 CDS YP_004126070.1 319762133 10103458 complement(1498276..1499472) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2407 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 1499472 10103458 Alide_1421 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004126070.1 1498276 R 596153 CDS YP_004126071.1 319762134 10103459 1499644..1500594 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_2978 LysR family transcriptional regulator; LysR family transcriptional regulator 1500594 10103459 Alide_1422 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126071.1 1499644 D 596153 CDS YP_004126072.1 319762135 10103460 complement(1500589..1500981) 1 NC_014910.1 PFAM: LrgB family protein; KEGG: dia:Dtpsy_2405 LrgB family protein; lrgb family protein 1500981 10103460 Alide_1423 Alicycliphilus denitrificans BC lrgb family protein YP_004126072.1 1500589 R 596153 CDS YP_004126073.1 319762136 10103461 complement(1500981..1501256) 1 NC_014910.1 PFAM: LrgA family protein; KEGG: dia:Dtpsy_2404 LrgA family protein; lrga family protein 1501256 10103461 Alide_1424 Alicycliphilus denitrificans BC lrga family protein YP_004126073.1 1500981 R 596153 CDS YP_004126074.1 319762137 10103462 1501561..1501788 1 NC_014910.1 KEGG: dia:Dtpsy_2403 hypothetical protein; hypothetical protein 1501788 10103462 Alide_1425 Alicycliphilus denitrificans BC hypothetical protein YP_004126074.1 1501561 D 596153 CDS YP_004126075.1 319762138 10103463 1501821..1501934 1 NC_014910.1 KEGG: dgr:Dgri_GH23134 GH23134 gene product from transcript GH23134-RA; hypothetical protein 1501934 10103463 Alide_1426 Alicycliphilus denitrificans BC hypothetical protein YP_004126075.1 1501821 D 596153 CDS YP_004126076.1 319762139 10103464 complement(1501952..1502248) 1 NC_014910.1 KEGG: ajs:Ajs_2619 hypothetical protein; hypothetical protein 1502248 10103464 Alide_1427 Alicycliphilus denitrificans BC hypothetical protein YP_004126076.1 1501952 R 596153 CDS YP_004126077.1 319762140 10103465 complement(1502404..1503006) 1 NC_014910.1 PFAM: protein of unknown function DUF1555; KEGG: tbd:Tbd_0194 hypothetical protein; hypothetical protein 1503006 10103465 Alide_1428 Alicycliphilus denitrificans BC hypothetical protein YP_004126077.1 1502404 R 596153 CDS YP_004126078.1 319762141 10103466 complement(1503230..1503547) 1 NC_014910.1 TIGRFAM: phage head-tail adaptor; KEGG: bcm:Bcenmc03_1291 phage head-tail adaptor; phage head-tail adaptor 1503547 10103466 Alide_1429 Alicycliphilus denitrificans BC phage head-tail adaptor YP_004126078.1 1503230 R 596153 CDS YP_004126079.1 319762142 10103467 complement(1503544..1503822) 1 NC_014910.1 TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bcm:Bcenmc03_1290 phage protein DNA packaging protein; phage protein 1503822 10103467 Alide_1430 Alicycliphilus denitrificans BC phage protein YP_004126079.1 1503544 R 596153 CDS YP_004126080.1 319762143 10103468 complement(1504003..1505508) 1 NC_014910.1 PFAM: Terminase; KEGG: pap:PSPA7_5155 phage terminase, large subunit; terminase 1505508 10103468 Alide_1431 Alicycliphilus denitrificans BC terminase YP_004126080.1 1504003 R 596153 CDS YP_004126081.1 319762144 10103469 complement(1505531..1505941) 1 NC_014910.1 KEGG: xbo:XBJ1_2042 terminase small subunit; terminase small subunit 1505941 10103469 Alide_1432 Alicycliphilus denitrificans BC terminase small subunit YP_004126081.1 1505531 R 596153 CDS YP_004126082.1 319762145 10103470 complement(1506007..1506360) 1 NC_014910.1 KEGG: pap:PSPA7_5153 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; hnh endonuclease 1506360 10103470 Alide_1433 Alicycliphilus denitrificans BC hnh endonuclease YP_004126082.1 1506007 R 596153 CDS YP_004126083.1 319762146 10103471 complement(1506357..1507550) 1 NC_014910.1 KEGG: bcm:Bcenmc03_1286 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; phage portal protein, hk97 family 1507550 10103471 Alide_1434 Alicycliphilus denitrificans BC phage portal protein, hk97 family YP_004126083.1 1506357 R 596153 CDS YP_004126084.1 319762147 10103472 complement(1507547..1508095) 1 NC_014910.1 KEGG: bcm:Bcenmc03_1285 HK97 family phage prohead protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; phage prohead protease, hk97 family 1508095 10103472 Alide_1435 Alicycliphilus denitrificans BC phage prohead protease, hk97 family YP_004126084.1 1507547 R 596153 CDS YP_004126085.1 319762148 10103473 complement(1508106..1509332) 1 NC_014910.1 KEGG: bcm:Bcenmc03_1284 major capsid protein HK97; major capsid protein hk97 1509332 10103473 Alide_1436 Alicycliphilus denitrificans BC major capsid protein hk97 YP_004126085.1 1508106 R 596153 CDS YP_004126086.1 319762149 10103474 complement(1509771..1510352) 1 NC_014910.1 manually curated; KEGG: ajs:Ajs_1730 hypothetical protein; hypothetical protein 1510352 10103474 Alide_1437 Alicycliphilus denitrificans BC hypothetical protein YP_004126086.1 1509771 R 596153 CDS YP_004126087.1 319762150 10103476 1511343..1511666 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1511666 10103476 Alide_1439 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004126087.1 1511343 D 596153 CDS YP_004126088.1 319762151 10103477 1511663..1512577 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 1512577 10103477 Alide_1440 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004126088.1 1511663 D 596153 CDS YP_004126089.1 319762152 10103478 complement(1512609..1512824) 1 NC_014910.1 KEGG: rpi:Rpic_2748 hypothetical protein; hypothetical protein 1512824 10103478 Alide_1441 Alicycliphilus denitrificans BC hypothetical protein YP_004126089.1 1512609 R 596153 CDS YP_004126090.1 319762153 10103479 complement(1512821..1513069) 1 NC_014910.1 PFAM: Prophage CP4-57 regulatory; KEGG: bra:BRADO6209 prophage CP4-57 regulatory protein; prophage cp4-57 regulatory 1513069 10103479 Alide_1442 Alicycliphilus denitrificans BC prophage cp4-57 regulatory YP_004126090.1 1512821 R 596153 CDS YP_004126091.1 319762154 10103480 complement(1513127..1513936) 1 NC_014910.1 KEGG: tbd:Tbd_2676 hypothetical protein; hypothetical protein 1513936 10103480 Alide_1443 Alicycliphilus denitrificans BC hypothetical protein YP_004126091.1 1513127 R 596153 CDS YP_004126092.1 319762155 10103481 complement(1514026..1514514) 1 NC_014910.1 KEGG: rpc:RPC_3988 tetratricopeptide TPR_2; hypothetical protein 1514514 10103481 Alide_1444 Alicycliphilus denitrificans BC hypothetical protein YP_004126092.1 1514026 R 596153 CDS YP_004126093.1 319762156 10103482 complement(1514616..1515851) 1 NC_014910.1 PFAM: integrase family protein; KEGG: lch:Lcho_2200 integrase family protein; integrase family protein 1515851 10103482 Alide_1445 Alicycliphilus denitrificans BC integrase family protein YP_004126093.1 1514616 R 596153 CDS YP_004126094.1 319762157 10103484 complement(1516206..1518056) 1 NC_014910.1 KEGG: ajs:Ajs_2610 peptidase M14, carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; peptidase m14 carboxypeptidase a 1518056 10103484 Alide_1446 Alicycliphilus denitrificans BC peptidase m14 carboxypeptidase a YP_004126094.1 1516206 R 596153 CDS YP_004126095.1 319762158 10103485 complement(1518157..1519851) 1 NC_014910.1 KEGG: ajs:Ajs_2609 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; dead/deah box helicase domain-containing protein 1519851 10103485 Alide_1447 Alicycliphilus denitrificans BC dead/deah box helicase domain-containing protein YP_004126095.1 1518157 R 596153 CDS YP_004126096.1 319762159 10103486 1520109..1521770 1 NC_014910.1 KEGG: dia:Dtpsy_1200 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1521770 10103486 Alide_1448 Alicycliphilus denitrificans BC ABC transporter YP_004126096.1 1520109 D 596153 CDS YP_004126097.1 319762160 10103487 complement(1521777..1523108) 1 NC_014910.1 KEGG: ajs:Ajs_2606 TRAP transporter solute receptor TAXI family protein; trap transporter solute receptor taxi family protein 1523108 10103487 Alide_1449 Alicycliphilus denitrificans BC trap transporter solute receptor taxi family protein YP_004126097.1 1521777 R 596153 CDS YP_004126098.1 319762161 10103488 complement(1523115..1524128) 1 NC_014910.1 PFAM: peptidase S58 DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA; peptidase s58 dmpa 1524128 10103488 Alide_1450 Alicycliphilus denitrificans BC peptidase s58 dmpa YP_004126098.1 1523115 R 596153 CDS YP_004126099.1 319762162 10103489 complement(1524167..1524646) 1 NC_014910.1 PFAM: protein of unknown function DUF411; KEGG: dia:Dtpsy_1206 protein of unknown function DUF411; hypothetical protein 1524646 10103489 Alide_1451 Alicycliphilus denitrificans BC hypothetical protein YP_004126099.1 1524167 R 596153 CDS YP_004126100.1 319762163 10103490 complement(1524673..1525158) 1 NC_014910.1 PFAM: blue (type 1) copper domain protein; KEGG: ajs:Ajs_2601 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein 1525158 10103490 Alide_1452 Alicycliphilus denitrificans BC blue (type 1) copper domain-containing protein YP_004126100.1 1524673 R 596153 CDS YP_004126101.1 319762164 10103491 complement(1525259..1525606) 1 NC_014910.1 KEGG: dia:Dtpsy_1211 hypothetical protein; hypothetical protein 1525606 10103491 Alide_1453 Alicycliphilus denitrificans BC hypothetical protein YP_004126101.1 1525259 R 596153 CDS YP_004126102.1 319762165 10103492 complement(1525624..1526250) 1 NC_014910.1 KEGG: dia:Dtpsy_1212 protein of unknown function DUF161; manually curated; PFAM: protein of unknown function DUF161; hypothetical protein 1526250 10103492 Alide_1454 Alicycliphilus denitrificans BC hypothetical protein YP_004126102.1 1525624 R 596153 CDS YP_004126103.1 319762166 10103493 complement(1526397..1528412) 1 NC_014910.1 KEGG: ajs:Ajs_2594 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase 1528412 10103493 Alide_1455 Alicycliphilus denitrificans BC heavy metal translocating p-type atpase YP_004126103.1 1526397 R 596153 CDS YP_004126104.1 319762167 10103494 1528453..1528911 1 NC_014910.1 KEGG: dia:Dtpsy_1215 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 1528911 10103494 Alide_1456 Alicycliphilus denitrificans BC MerR family transcriptional regulator YP_004126104.1 1528453 D 596153 CDS YP_004126105.1 319762168 10103495 1529012..1529827 1 NC_014910.1 PFAM: protein of unknown function DUF140; KEGG: dia:Dtpsy_1216 protein of unknown function DUF140; hypothetical protein 1529827 10103495 Alide_1457 Alicycliphilus denitrificans BC hypothetical protein YP_004126105.1 1529012 D 596153 CDS YP_004126106.1 319762169 10103496 1529849..1530832 1 NC_014910.1 PFAM: Mammalian cell entry related domain protein; KEGG: dia:Dtpsy_1217 mammalian cell entry related domain protein; mammalian cell entry related domain-containing protein 1530832 10103496 Alide_1458 Alicycliphilus denitrificans BC mammalian cell entry related domain-containing protein YP_004126106.1 1529849 D 596153 CDS YP_004126107.1 319762170 10103497 1530996..1531679 1 NC_014910.1 KEGG: dia:Dtpsy_1218 hypothetical protein; hypothetical protein 1531679 10103497 Alide_1459 Alicycliphilus denitrificans BC hypothetical protein YP_004126107.1 1530996 D 596153 CDS YP_004126108.1 319762171 10103498 complement(1531661..1532494) 1 NC_014910.1 KEGG: vap:Vapar_0122 hypothetical protein; hypothetical protein 1532494 10103498 Alide_1460 Alicycliphilus denitrificans BC hypothetical protein YP_004126108.1 1531661 R 596153 CDS YP_004126109.1 319762172 10103499 complement(1532518..1534044) 1 NC_014910.1 KEGG: ajs:Ajs_2588 carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain-containing protein; carbohydrate kinase 1534044 10103499 Alide_1461 Alicycliphilus denitrificans BC carbohydrate kinase YP_004126109.1 1532518 R 596153 CDS YP_004126110.1 319762173 10103500 complement(1534074..1535315) 1 NC_014910.1 KEGG: ajs:Ajs_2587 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase 1535315 10103500 Alide_1462 Alicycliphilus denitrificans BC D-amino-acid dehydrogenase YP_004126110.1 1534074 R 596153 CDS YP_004126111.1 319762174 10103501 complement(1535370..1536716) 1 NC_014910.1 PFAM: Amidase; KEGG: ajs:Ajs_2586 amidase; amidase 1536716 10103501 Alide_1463 Alicycliphilus denitrificans BC amidase YP_004126111.1 1535370 R 596153 CDS YP_004126112.1 319762175 10103502 1536935..1537687 1 NC_014910.1 KEGG: ajs:Ajs_2585 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; 30S ribosomal protein S2 1537687 10103502 Alide_1464 Alicycliphilus denitrificans BC 30S ribosomal protein S2 YP_004126112.1 1536935 D 596153 CDS YP_004126113.1 319762176 10103503 1537802..1538698 1 NC_014910.1 KEGG: dia:Dtpsy_1224 elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; translation elongation factor ts 1538698 10103503 Alide_1465 Alicycliphilus denitrificans BC translation elongation factor ts YP_004126113.1 1537802 D 596153 CDS YP_004126114.1 319762177 10103504 1538752..1539474 1 NC_014910.1 KEGG: dia:Dtpsy_1225 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase 1539474 10103504 Alide_1466 Alicycliphilus denitrificans BC uridylate kinase YP_004126114.1 1538752 D 596153 CDS YP_004126115.1 319762178 10103505 1539524..1540084 1 NC_014910.1 KEGG: dia:Dtpsy_1226 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; ribosome recycling factor 1540084 10103505 Alide_1467 Alicycliphilus denitrificans BC ribosome recycling factor YP_004126115.1 1539524 D 596153 CDS YP_004126116.1 319762179 10103506 1540096..1540833 1 NC_014910.1 TIGRFAM: undecaprenyl diphosphate synthase; KEGG: dia:Dtpsy_1227 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1540833 10103506 Alide_1468 Alicycliphilus denitrificans BC undecaprenyl diphosphate synthase YP_004126116.1 1540096 D 596153 CDS YP_004126117.1 319762180 10103507 1540872..1541717 1 NC_014910.1 PFAM: phosphatidate cytidylyltransferase; KEGG: dia:Dtpsy_1228 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1541717 10103507 Alide_1469 Alicycliphilus denitrificans BC phosphatidate cytidylyltransferase YP_004126117.1 1540872 D 596153 CDS YP_004126118.1 319762181 10103508 1541721..1542896 1 NC_014910.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: dia:Dtpsy_1229 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1542896 10103508 Alide_1470 Alicycliphilus denitrificans BC 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004126118.1 1541721 D 596153 CDS YP_004126119.1 319762182 10103509 1542999..1544360 1 NC_014910.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_2578 peptidase RseP; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease 1544360 10103509 Alide_1471 Alicycliphilus denitrificans BC membrane-associated zinc metalloprotease YP_004126119.1 1542999 D 596153 CDS YP_004126120.1 319762183 10103510 1544406..1546703 1 NC_014910.1 KEGG: dia:Dtpsy_1231 outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; outer membrane protein assembly complex, yaet protein 1546703 10103510 Alide_1472 Alicycliphilus denitrificans BC outer membrane protein assembly complex, yaet protein YP_004126120.1 1544406 D 596153 CDS YP_004126121.1 319762184 10103511 1546703..1547227 1 NC_014910.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: ajs:Ajs_2576 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 1547227 10103511 Alide_1473 Alicycliphilus denitrificans BC outer membrane chaperone Skp YP_004126121.1 1546703 D 596153 CDS YP_004126122.1 319762185 10103512 1547256..1548254 1 NC_014910.1 KEGG: dia:Dtpsy_1233 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; udp-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferase 1548254 10103512 Alide_1474 Alicycliphilus denitrificans BC udp-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferase YP_004126122.1 1547256 D 596153 CDS YP_004126123.1 319762186 10103513 1548251..1548691 1 NC_014910.1 KEGG: aav:Aave_1834 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(ACP) dehydratase FabZ 1548691 10103513 Alide_1475 Alicycliphilus denitrificans BC beta-hydroxyacyl-(ACP) dehydratase FabZ YP_004126123.1 1548251 D 596153 CDS YP_004126124.1 319762187 10103514 1548717..1549505 1 NC_014910.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: ajs:Ajs_2573 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein; acyl-ACP-UDP-N- acetylglucosamine O-acyltransferase 1549505 10103514 Alide_1476 Alicycliphilus denitrificans BC acyl-ACP-UDP-N- acetylglucosamine O-acyltransferase YP_004126124.1 1548717 D 596153 CDS YP_004126125.1 319762188 10103515 1549517..1550671 1 NC_014910.1 PFAM: glycosyl transferase family 19; manually curated; KEGG: dia:Dtpsy_1236 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; lipid-A-disaccharide synthase 1550671 10103515 Alide_1477 Alicycliphilus denitrificans BC lipid-A-disaccharide synthase YP_004126125.1 1549517 D 596153 CDS YP_004126126.1 319762189 10103516 1550646..1551266 1 NC_014910.1 KEGG: dia:Dtpsy_1237 ribonuclease HII; PFAM: ribonuclease HII/HIII; ribonuclease h 1551266 10103516 Alide_1478 Alicycliphilus denitrificans BC ribonuclease h YP_004126126.1 1550646 D 596153 CDS YP_004126127.1 319762190 10103517 1551263..1552039 1 NC_014910.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dia:Dtpsy_1238 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase (spou) 1552039 10103517 Alide_1479 Alicycliphilus denitrificans BC tRNA/rRNA methyltransferase (spou) YP_004126127.1 1551263 D 596153 CDS YP_004126128.1 319762191 10103518 1552355..1553599 1 NC_014910.1 PFAM: integrase family protein; KEGG: glo:Glov_1428 integrase family protein; integrase family protein 1553599 10103518 Alide_1480 Alicycliphilus denitrificans BC integrase family protein YP_004126128.1 1552355 D 596153 CDS YP_004126129.1 319762192 10103519 1554055..1554378 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1554378 10103519 Alide_1481 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004126129.1 1554055 D 596153 CDS YP_004126130.1 319762193 10103520 1554375..1555289 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 1555289 10103520 Alide_1482 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004126130.1 1554375 D 596153 CDS YP_004126131.1 319762194 10103523 complement(1555753..1556760) 1 NC_014910.1 PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: ctt:CtCNB1_2987 inositol; inositol phosphatase/fructose-16-bisphosphatase 1556760 10103523 Alide_1484 Alicycliphilus denitrificans BC inositol phosphatase/fructose-16-bisphosphatase YP_004126131.1 1555753 R 596153 CDS YP_004126132.1 319762195 10103524 complement(1556781..1559489) 1 NC_014910.1 KEGG: dia:Dtpsy_2249 aminopeptidase N; TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; aminopeptidase 1559489 10103524 Alide_1485 Alicycliphilus denitrificans BC aminopeptidase YP_004126132.1 1556781 R 596153 CDS YP_004126133.1 319762196 10103525 complement(join(1559501..1560523,1560525..1560605)) 1 NC_014910.1 manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein; peptide chain release factor 2 1560605 10103525 Alide_1486 Alicycliphilus denitrificans BC peptide chain release factor 2 YP_004126133.1 1559501 R 596153 CDS YP_004126134.1 319762197 10103526 complement(1560674..1561678) 1 NC_014910.1 TIGRFAM: diaminopimelate dehydrogenase; KEGG: ajs:Ajs_2757 diaminopimelate dehydrogenase; PFAM: dihydrodipicolinate reductase; diaminopimelate dehydrogenase 1561678 10103526 Alide_1487 Alicycliphilus denitrificans BC diaminopimelate dehydrogenase YP_004126134.1 1560674 R 596153 CDS YP_004126135.1 319762198 10103527 complement(1561801..1562733) 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_2246 alpha/beta hydrolase fold protein; alpha/beta hydrolase 1562733 10103527 Alide_1488 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004126135.1 1561801 R 596153 CDS YP_004126136.1 319762199 10103528 1562853..1564181 1 NC_014910.1 PFAM: extracellular solute-binding protein family 1; KEGG: dac:Daci_4801 extracellular solute-binding protein; ABC transporter substrate-binding protein 1564181 10103528 Alide_1489 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004126136.1 1562853 D 596153 CDS YP_004126137.1 319762200 10103529 1564245..1565975 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_4800 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1565975 10103529 Alide_1490 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004126137.1 1564245 D 596153 CDS YP_004126138.1 319762201 10103530 1565979..1567064 1 NC_014910.1 KEGG: dac:Daci_4799 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 1567064 10103530 Alide_1491 Alicycliphilus denitrificans BC ABC transporter YP_004126138.1 1565979 D 596153 CDS YP_004126139.1 319762202 10103531 1567134..1568195 1 NC_014910.1 PFAM: aldo/keto reductase; KEGG: ajs:Ajs_2755 aldo/keto reductase; aldo/keto reductase 1568195 10103531 Alide_1492 Alicycliphilus denitrificans BC aldo/keto reductase YP_004126139.1 1567134 D 596153 CDS YP_004126140.1 319762203 10103532 1568259..1568759 1 NC_014910.1 KEGG: ajs:Ajs_2754 YbaK/EbsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; ybak/ebsc protein 1568759 10103532 Alide_1493 Alicycliphilus denitrificans BC ybak/ebsc protein YP_004126140.1 1568259 D 596153 CDS YP_004126141.1 319762204 10103533 1568791..1569423 1 NC_014910.1 PFAM: protein of unknown function DUF205; KEGG: dia:Dtpsy_2243 protein of unknown function DUF205; hypothetical protein 1569423 10103533 Alide_1494 Alicycliphilus denitrificans BC hypothetical protein YP_004126141.1 1568791 D 596153 CDS YP_004126142.1 319762205 10103534 complement(1569426..1570424) 1 NC_014910.1 KEGG: dia:Dtpsy_2242 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1570424 10103534 Alide_1495 Alicycliphilus denitrificans BC metal dependent phosphohydrolase YP_004126142.1 1569426 R 596153 CDS YP_004126143.1 319762206 10103535 complement(1570454..1571101) 1 NC_014910.1 KEGG: ajs:Ajs_2751 hypothetical protein; hypothetical protein 1571101 10103535 Alide_1496 Alicycliphilus denitrificans BC hypothetical protein YP_004126143.1 1570454 R 596153 CDS YP_004126144.1 319762207 10103536 complement(1571112..1571597) 1 NC_014910.1 PFAM: protein of unknown function DUF520; KEGG: ajs:Ajs_2750 nucleotide-binding protein; hypothetical protein 1571597 10103536 Alide_1497 Alicycliphilus denitrificans BC hypothetical protein YP_004126144.1 1571112 R 596153 CDS YP_004126145.1 319762208 10103537 1571662..1572750 1 NC_014910.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dia:Dtpsy_2239 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein; udp-n-acetylenolpyruvoylglucosamine reductase 1572750 10103537 Alide_1498 Alicycliphilus denitrificans BC udp-n-acetylenolpyruvoylglucosamine reductase YP_004126145.1 1571662 D 596153 CDS YP_004126146.1 319762209 10103538 complement(1572858..1573232) 1 NC_014910.1 KEGG: dac:Daci_4779 SPW repeat-containing protein; spw repeat-containing protein 1573232 10103538 Alide_1499 Alicycliphilus denitrificans BC spw repeat-containing protein YP_004126146.1 1572858 R 596153 CDS YP_004126147.1 319762210 10103539 1573396..1574067 1 NC_014910.1 KEGG: dia:Dtpsy_2235 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; hypothetical protein 1574067 10103539 Alide_1500 Alicycliphilus denitrificans BC hypothetical protein YP_004126147.1 1573396 D 596153 CDS YP_004126148.1 319762211 10103540 1574064..1574783 1 NC_014910.1 KEGG: dia:Dtpsy_2234 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like; exoenzyme S synthesis protein B 1574783 10103540 Alide_1501 Alicycliphilus denitrificans BC exoenzyme S synthesis protein B YP_004126148.1 1574064 D 596153 CDS YP_004126149.1 319762212 10103541 1575163..1577307 1 NC_014910.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: reu:Reut_C6172 acetone carboxylase, beta subunit; hydantoinase/oxoprolinase 1577307 10103541 Alide_1502 Alicycliphilus denitrificans BC hydantoinase/oxoprolinase YP_004126149.1 1575163 D 596153 CDS YP_004126150.1 319762213 10103542 1577319..1579643 1 NC_014910.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: tmz:Tmz1t_3470 hydantoinase B/oxoprolinase; hydantoinase b/oxoprolinase 1579643 10103542 Alide_1503 Alicycliphilus denitrificans BC hydantoinase b/oxoprolinase YP_004126150.1 1577319 D 596153 CDS YP_004126151.1 319762214 10103543 1579668..1580174 1 NC_014910.1 PFAM: Acetone carboxylase gamma subunit; KEGG: eba:ebA4702 acetone carboxylase gamma subunit; acetone carboxylase subunit gamma 1580174 10103543 Alide_1504 Alicycliphilus denitrificans BC acetone carboxylase subunit gamma YP_004126151.1 1579668 D 596153 CDS YP_004126152.1 319762215 10103544 1580360..1582342 1 NC_014910.1 KEGG: tmz:Tmz1t_3466 GAF modulated sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 1582342 10103544 Alide_1505 Alicycliphilus denitrificans BC sigma-54 factor interaction domain-containing protein YP_004126152.1 1580360 D 596153 CDS YP_004126153.1 319762216 10103545 complement(1582445..1583788) 1 NC_014910.1 TIGRFAM: argininosuccinate synthase; KEGG: dia:Dtpsy_2233 argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase 1583788 10103545 Alide_1506 Alicycliphilus denitrificans BC argininosuccinate synthase YP_004126153.1 1582445 R 596153 CDS YP_004126154.1 319762217 10103546 complement(1583816..1584133) 1 NC_014910.1 PFAM: protein of unknown function DUF1255; KEGG: dia:Dtpsy_2232 protein of unknown function DUF1255; hypothetical protein 1584133 10103546 Alide_1507 Alicycliphilus denitrificans BC hypothetical protein YP_004126154.1 1583816 R 596153 CDS YP_004126155.1 319762218 10103547 complement(1584194..1584865) 1 NC_014910.1 KEGG: dia:Dtpsy_2231 17 kDa surface antigen; hypothetical protein 1584865 10103547 Alide_1508 Alicycliphilus denitrificans BC hypothetical protein YP_004126155.1 1584194 R 596153 CDS YP_004126156.1 319762219 10103548 complement(1584986..1585372) 1 NC_014910.1 PFAM: arsenate reductase and related; KEGG: dia:Dtpsy_2230 arsenate reductase and related; arsenate reductase 1585372 10103548 Alide_1509 Alicycliphilus denitrificans BC arsenate reductase YP_004126156.1 1584986 R 596153 CDS YP_004126157.1 319762220 10103549 1585391..1586743 1 NC_014910.1 TIGRFAM: FolC bifunctional protein; KEGG: ajs:Ajs_2739 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 1586743 10103549 Alide_1510 Alicycliphilus denitrificans BC bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_004126157.1 1585391 D 596153 CDS YP_004126158.1 319762221 10103550 1586753..1587589 1 NC_014910.1 PFAM: Sporulation domain-containing protein; KEGG: dia:Dtpsy_2228 sporulation domain protein; sporulation domain-containing protein 1587589 10103550 Alide_1511 Alicycliphilus denitrificans BC sporulation domain-containing protein YP_004126158.1 1586753 D 596153 CDS YP_004126159.1 319762222 10103551 1587603..1588091 1 NC_014910.1 PFAM: Colicin V production protein; Protein of unknown function DUF2474; KEGG: dia:Dtpsy_2227 colicin V production protein; colicin v production protein 1588091 10103551 Alide_1512 Alicycliphilus denitrificans BC colicin v production protein YP_004126159.1 1587603 D 596153 CDS YP_004126160.1 319762223 10103552 1588155..1589663 1 NC_014910.1 KEGG: dia:Dtpsy_2226 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; amidophosphoribosyltransferase 1589663 10103552 Alide_1513 Alicycliphilus denitrificans BC amidophosphoribosyltransferase YP_004126160.1 1588155 D 596153 CDS YP_004126161.1 319762224 10103553 1589792..1591006 1 NC_014910.1 TIGRFAM: O-succinylhomoserine sulfhydrylase; KEGG: dac:Daci_4768 O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; o-succinylhomoserine sulfhydrylase 1591006 10103553 Alide_1514 Alicycliphilus denitrificans BC o-succinylhomoserine sulfhydrylase YP_004126161.1 1589792 D 596153 CDS YP_004126162.1 319762225 10103554 1591003..1592406 1 NC_014910.1 KEGG: dia:Dtpsy_2224 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 1592406 10103554 Alide_1515 Alicycliphilus denitrificans BC glutamyl-tRNA synthetase YP_004126162.1 1591003 D 596153 CDS YP_004126163.1 319762226 10103561 complement(1593200..1593958) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2108 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 1593958 10103561 Alide_1516 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004126163.1 1593200 R 596153 CDS YP_004126164.1 319762227 10103562 1594278..1594751 1 NC_014910.1 KEGG: cfl:Cfla_1172 lipoate--protein ligase; hypothetical protein 1594751 10103562 Alide_1517 Alicycliphilus denitrificans BC hypothetical protein YP_004126164.1 1594278 D 596153 CDS YP_004126165.1 319762228 10103563 1594753..1595382 1 NC_014910.1 manually curated; KEGG: cci:CC1G_12013 tRNA (guanine-N2-)-methyltransferase; hypothetical protein 1595382 10103563 Alide_1518 Alicycliphilus denitrificans BC hypothetical protein YP_004126165.1 1594753 D 596153 CDS YP_004126166.1 319762229 10103564 1595373..1595495 1 NC_014910.1 hypothetical protein 1595495 10103564 Alide_1519 Alicycliphilus denitrificans BC hypothetical protein YP_004126166.1 1595373 D 596153 CDS YP_004126167.1 319762230 10103565 complement(1595522..1597036) 1 NC_014910.1 KEGG: dia:Dtpsy_2523 transposase IS66; transposase is66 1597036 10103565 Alide_1520 Alicycliphilus denitrificans BC transposase is66 YP_004126167.1 1595522 R 596153 CDS YP_004126168.1 319762231 10103566 complement(1597119..1597451) 1 NC_014910.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; is66 orf2 family protein 1597451 10103566 Alide_1521 Alicycliphilus denitrificans BC is66 orf2 family protein YP_004126168.1 1597119 R 596153 CDS YP_004126169.1 319762232 10103567 complement(1597448..1597876) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase is3/is911 family protein 1597876 10103567 Alide_1522 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004126169.1 1597448 R 596153 CDS YP_004126170.1 319762233 10103568 complement(1598218..1598979) 1 NC_014910.1 KEGG: cbt:CLH_2513 1,4-beta-N-acetylmuramidase; hypothetical protein 1598979 10103568 Alide_1523 Alicycliphilus denitrificans BC hypothetical protein YP_004126170.1 1598218 R 596153 CDS YP_004126171.1 319762234 10103569 complement(1599009..1599821) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_3784 integrase catalytic subunit; integrase catalytic region protein 1599821 10103569 Alide_1524 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004126171.1 1599009 R 596153 CDS YP_004126172.1 319762235 10103570 complement(1599839..1600105) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911; transposase is3/is911 family protein 1600105 10103570 Alide_1525 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004126172.1 1599839 R 596153 CDS YP_004126173.1 319762236 10103571 complement(1600574..1601818) 1 NC_014910.1 KEGG: xac:XAC3233 transposase; transposase 1601818 10103571 Alide_1526 Alicycliphilus denitrificans BC transposase YP_004126173.1 1600574 R 596153 CDS YP_004126174.1 319762237 10103572 complement(1601829..1602530) 1 NC_014910.1 KEGG: reu:Reut_C5919 hypothetical protein; hypothetical protein 1602530 10103572 Alide_1527 Alicycliphilus denitrificans BC hypothetical protein YP_004126174.1 1601829 R 596153 CDS YP_004126175.1 319762238 10103573 complement(1602530..1602829) 1 NC_014910.1 KEGG: mpt:Mpe_B0404 hypothetical protein; hypothetical protein 1602829 10103573 Alide_1528 Alicycliphilus denitrificans BC hypothetical protein YP_004126175.1 1602530 R 596153 CDS YP_004126176.1 319762239 10103574 complement(1603005..1603586) 1 NC_014910.1 TIGRFAM: LexA repressor; KEGG: bpy:Bphyt_3718 LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; lexa repressor 1603586 10103574 Alide_1529 Alicycliphilus denitrificans BC lexa repressor YP_004126176.1 1603005 R 596153 CDS YP_004126177.1 319762240 10103575 1603885..1604208 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1604208 10103575 Alide_1530 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004126177.1 1603885 D 596153 CDS YP_004126178.1 319762241 10103576 1604205..1605119 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 1605119 10103576 Alide_1531 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004126178.1 1604205 D 596153 CDS YP_004126179.1 319762242 10103577 complement(1605339..1606388) 1 NC_014910.1 PFAM: extracellular solute-binding protein family 1; KEGG: ajs:Ajs_1607 extracellular solute-binding protein; ABC transporter substrate-binding protein 1606388 10103577 Alide_1532 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004126179.1 1605339 R 596153 CDS YP_004126180.1 319762243 10103578 complement(1606671..1607225) 1 NC_014910.1 KEGG: dia:Dtpsy_1366 phasin family protein; TIGRFAM: phasin family protein; PFAM: Phasin; phasin family protein 1607225 10103578 Alide_1533 Alicycliphilus denitrificans BC phasin family protein YP_004126180.1 1606671 R 596153 CDS YP_004126181.1 319762244 10103579 1607483..1607956 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_1367 thioesterase superfamily protein; thioesterase superfamily protein 1607956 10103579 Alide_1534 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004126181.1 1607483 D 596153 CDS YP_004126182.1 319762245 10103580 1608106..1609305 1 NC_014910.1 KEGG: dia:Dtpsy_1368 nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; nicotinate phosphoribosyltransferase 1609305 10103580 Alide_1535 Alicycliphilus denitrificans BC nicotinate phosphoribosyltransferase YP_004126182.1 1608106 D 596153 CDS YP_004126183.1 319762246 10103581 1609353..1610765 1 NC_014910.1 KEGG: ajs:Ajs_2491 transmembrane protein; transmembrane protein 1610765 10103581 Alide_1536 Alicycliphilus denitrificans BC transmembrane protein YP_004126183.1 1609353 D 596153 CDS YP_004126184.1 319762247 10103582 1610782..1611762 1 NC_014910.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dia:Dtpsy_1370 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 1611762 10103582 Alide_1537 Alicycliphilus denitrificans BC d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein YP_004126184.1 1610782 D 596153 CDS YP_004126185.1 319762248 10103583 1611836..1613434 1 NC_014910.1 PFAM: protein of unknown function DUF195; KEGG: azo:azo2787 RumC-like protein; hypothetical protein 1613434 10103583 Alide_1538 Alicycliphilus denitrificans BC hypothetical protein YP_004126185.1 1611836 D 596153 CDS YP_004126186.1 319762249 10103584 1613431..1614594 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_1372 major facilitator superfamily MFS_1; major facilitator superfamily protein 1614594 10103584 Alide_1539 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004126186.1 1613431 D 596153 CDS YP_004126187.1 319762250 10103585 complement(1614609..1615472) 1 NC_014910.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: ajs:Ajs_2487 hypothetical protein; hypothetical protein 1615472 10103585 Alide_1540 Alicycliphilus denitrificans BC hypothetical protein YP_004126187.1 1614609 R 596153 CDS YP_004126188.1 319762251 10103586 complement(1615602..1615997) 1 NC_014910.1 KEGG: dia:Dtpsy_1374 camphor resistance protein CrcB; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; crcb protein 1615997 10103586 Alide_1541 Alicycliphilus denitrificans BC crcb protein YP_004126188.1 1615602 R 596153 CDS YP_004126189.1 319762252 10103587 complement(1616021..1617796) 1 NC_014910.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: dia:Dtpsy_1379 hypothetical protein; peptidase m14 carboxypeptidase a 1617796 10103587 Alide_1542 Alicycliphilus denitrificans BC peptidase m14 carboxypeptidase a YP_004126189.1 1616021 R 596153 CDS YP_004126190.1 319762253 10103588 complement(1617799..1618170) 1 NC_014910.1 PFAM: Na+/H+ antiporter subunit; KEGG: dia:Dtpsy_1381 Na+/H+ antiporter subunit; na+/h+ antiporter subunit 1618170 10103588 Alide_1543 Alicycliphilus denitrificans BC na+/h+ antiporter subunit YP_004126190.1 1617799 R 596153 CDS YP_004126191.1 319762254 10103589 complement(1618167..1618448) 1 NC_014910.1 PFAM: multiple resistance and pH regulation protein F; KEGG: dia:Dtpsy_1382 multiple resistance and pH regulation protein F; multiple resistance and ph regulation protein f 1618448 10103589 Alide_1544 Alicycliphilus denitrificans BC multiple resistance and ph regulation protein f YP_004126191.1 1618167 R 596153 CDS YP_004126192.1 319762255 10103590 complement(1618445..1618936) 1 NC_014910.1 PFAM: cation antiporter; KEGG: dia:Dtpsy_1383 monovalent cation/H+ antiporter subunit E; cation antiporter 1618936 10103590 Alide_1545 Alicycliphilus denitrificans BC cation antiporter YP_004126192.1 1618445 R 596153 CDS YP_004126193.1 319762256 10103591 complement(1618933..1620645) 1 NC_014910.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ajs:Ajs_2476 monovalent cation/H+ antiporter subunit D; NADH/ubiquinone/plastoquinone (complex i) 1620645 10103591 Alide_1546 Alicycliphilus denitrificans BC NADH/ubiquinone/plastoquinone (complex i) YP_004126193.1 1618933 R 596153 CDS YP_004126194.1 319762257 10103592 complement(1620707..1621072) 1 NC_014910.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dia:Dtpsy_1385 monovalent cation/H+ antiporter subunit C; NADH-ubiquinone oxidoreductase subunit 4L 1621072 10103592 Alide_1547 Alicycliphilus denitrificans BC NADH-ubiquinone oxidoreductase subunit 4L YP_004126194.1 1620707 R 596153 CDS YP_004126195.1 319762258 10103593 complement(1621073..1624033) 1 NC_014910.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: dia:Dtpsy_1386 monovalent cation/H+ antiporter subunit A; NADH/ubiquinone/plastoquinone (complex i) 1624033 10103593 Alide_1548 Alicycliphilus denitrificans BC NADH/ubiquinone/plastoquinone (complex i) YP_004126195.1 1621073 R 596153 CDS YP_004126196.1 319762259 10103594 complement(1624122..1624442) 1 NC_014910.1 KEGG: ajs:Ajs_2473 hypothetical protein; hypothetical protein 1624442 10103594 Alide_1549 Alicycliphilus denitrificans BC hypothetical protein YP_004126196.1 1624122 R 596153 CDS YP_004126197.1 319762260 10103596 complement(1625590..1625901) 1 NC_014910.1 KEGG: dia:Dtpsy_1389 hypothetical protein; hypothetical protein 1625901 10103596 Alide_1551 Alicycliphilus denitrificans BC hypothetical protein YP_004126197.1 1625590 R 596153 CDS YP_004126198.1 319762261 10103597 complement(1626107..1626892) 1 NC_014910.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dia:Dtpsy_2031 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1626892 10103597 Alide_1552 Alicycliphilus denitrificans BC PpiC-type peptidyl-prolyl cis-trans isomerase YP_004126198.1 1626107 R 596153 CDS YP_004126199.1 319762262 10103598 complement(1626959..1627237) 1 NC_014910.1 PFAM: BolA family protein; KEGG: dia:Dtpsy_2030 BolA family protein; bola family protein 1627237 10103598 Alide_1553 Alicycliphilus denitrificans BC bola family protein YP_004126199.1 1626959 R 596153 CDS YP_004126200.1 319762263 10103599 complement(1627234..1627791) 1 NC_014910.1 KEGG: ajs:Ajs_1675 intracellular septation protein A; TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; intracellular septation protein a 1627791 10103599 Alide_1554 Alicycliphilus denitrificans BC intracellular septation protein a YP_004126200.1 1627234 R 596153 CDS YP_004126201.1 319762264 10103600 complement(1627788..1628201) 1 NC_014910.1 TIGRFAM: methionine-R-sulfoxide reductase; KEGG: dia:Dtpsy_2028 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-r-sulfoxide reductase 1628201 10103600 Alide_1555 Alicycliphilus denitrificans BC methionine-r-sulfoxide reductase YP_004126201.1 1627788 R 596153 CDS YP_004126202.1 319762265 10103603 1630768..1632003 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2025 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 1632003 10103603 Alide_1558 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004126202.1 1630768 D 596153 CDS YP_004126203.1 319762266 10103604 1632077..1633030 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2024 inner-membrane translocator; inner-membrane translocator 1633030 10103604 Alide_1559 Alicycliphilus denitrificans BC inner-membrane translocator YP_004126203.1 1632077 D 596153 CDS YP_004126204.1 319762267 10103605 1633035..1634369 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2023 inner-membrane translocator; inner-membrane translocator 1634369 10103605 Alide_1560 Alicycliphilus denitrificans BC inner-membrane translocator YP_004126204.1 1633035 D 596153 CDS YP_004126205.1 319762268 10103606 1634366..1635154 1 NC_014910.1 KEGG: dia:Dtpsy_2022 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1635154 10103606 Alide_1561 Alicycliphilus denitrificans BC ABC transporter YP_004126205.1 1634366 D 596153 CDS YP_004126206.1 319762269 10103607 1635154..1635849 1 NC_014910.1 KEGG: dia:Dtpsy_2021 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1635849 10103607 Alide_1562 Alicycliphilus denitrificans BC ABC transporter YP_004126206.1 1635154 D 596153 CDS YP_004126207.1 319762270 10103608 1636044..1638143 1 NC_014910.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_1684 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 1638143 10103608 Alide_1563 Alicycliphilus denitrificans BC 3-hydroxyacyl-CoA dehydrogenase YP_004126207.1 1636044 D 596153 CDS YP_004126208.1 319762271 10103609 1638178..1639347 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_2019 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 1639347 10103609 Alide_1564 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004126208.1 1638178 D 596153 CDS YP_004126209.1 319762272 10103610 1639575..1640477 1 NC_014910.1 KEGG: ctt:CtCNB1_1865 glutamate-binding protein precursor; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 1640477 10103610 Alide_1565 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004126209.1 1639575 D 596153 CDS YP_004126210.1 319762273 10103611 1640481..1641143 1 NC_014910.1 KEGG: dac:Daci_4388 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1641143 10103611 Alide_1566 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004126210.1 1640481 D 596153 CDS YP_004126211.1 319762274 10103612 1641140..1641940 1 NC_014910.1 KEGG: ctt:CtCNB1_1867 amino acid ABC transporter, permease protein PEB1; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1641940 10103612 Alide_1567 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004126211.1 1641140 D 596153 CDS YP_004126212.1 319762275 10103613 1642373..1644274 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2017 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 1644274 10103613 Alide_1568 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004126212.1 1642373 D 596153 CDS YP_004126213.1 319762276 10103614 1644307..1644810 1 NC_014910.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: dia:Dtpsy_2016 NAD(P)H dehydrogenase (quinone); flavodoxin/nitric oxide synthase 1644810 10103614 Alide_1569 Alicycliphilus denitrificans BC flavodoxin/nitric oxide synthase YP_004126213.1 1644307 D 596153 CDS YP_004126214.1 319762277 10103615 1645051..1645899 1 NC_014910.1 KEGG: bpt:Bpet3196 hypothetical protein; manually curated; PFAM: protein of unknown function DUF6 transmembrane; hypothetical protein 1645899 10103615 Alide_1570 Alicycliphilus denitrificans BC hypothetical protein YP_004126214.1 1645051 D 596153 CDS YP_004126215.1 319762278 10103617 complement(1646348..1646500) 1 NC_014910.1 KEGG: psa:PST_2393 NAD-specific glutamate dehydrogenase; hypothetical protein 1646500 10103617 Alide_1571 Alicycliphilus denitrificans BC hypothetical protein YP_004126215.1 1646348 R 596153 CDS YP_004126216.1 319762279 10103618 complement(1646493..1646921) 1 NC_014910.1 KEGG: eli:ELI_12715 phosphoribosylamine--glycine ligase; hypothetical protein 1646921 10103618 Alide_1572 Alicycliphilus denitrificans BC hypothetical protein YP_004126216.1 1646493 R 596153 CDS YP_004126217.1 319762280 10103619 complement(1646978..1647124) 1 NC_014910.1 hypothetical protein 1647124 10103619 Alide_1573 Alicycliphilus denitrificans BC hypothetical protein YP_004126217.1 1646978 R 596153 CDS YP_004126218.1 319762281 10103620 complement(1647121..1647537) 1 NC_014910.1 KEGG: bvi:Bcep1808_6849 hypothetical protein; manually curated; PFAM: VRR-NUC domain-containing protein; vrr-nuc domain-containing protein 1647537 10103620 Alide_1574 Alicycliphilus denitrificans BC vrr-nuc domain-containing protein YP_004126218.1 1647121 R 596153 CDS YP_004126219.1 319762282 10103621 complement(1647578..1649530) 1 NC_014910.1 PFAM: Primase 2; KEGG: tin:Tint_1139 primase 2; primase 2 1649530 10103621 Alide_1575 Alicycliphilus denitrificans BC primase 2 YP_004126219.1 1647578 R 596153 CDS YP_004126220.1 319762283 10103622 complement(1649530..1649817) 1 NC_014910.1 KEGG: ddr:Deide_01150 glutaminyl-tRNA synthetase; hypothetical protein 1649817 10103622 Alide_1576 Alicycliphilus denitrificans BC hypothetical protein YP_004126220.1 1649530 R 596153 CDS YP_004126221.1 319762284 10103623 complement(1649814..1650167) 1 NC_014910.1 KEGG: vap:Vapar_3800 hypothetical protein; hypothetical protein 1650167 10103623 Alide_1577 Alicycliphilus denitrificans BC hypothetical protein YP_004126221.1 1649814 R 596153 CDS YP_004126222.1 319762285 10103624 complement(1650248..1650499) 1 NC_014910.1 KEGG: ajs:Ajs_3336 hypothetical protein; hypothetical protein 1650499 10103624 Alide_1578 Alicycliphilus denitrificans BC hypothetical protein YP_004126222.1 1650248 R 596153 CDS YP_004126223.1 319762286 10103625 complement(1650604..1651428) 1 NC_014910.1 KEGG: pna:Pnap_0969 hypothetical protein; hypothetical protein 1651428 10103625 Alide_1579 Alicycliphilus denitrificans BC hypothetical protein YP_004126223.1 1650604 R 596153 CDS YP_004126224.1 319762287 10103626 complement(1651537..1652871) 1 NC_014910.1 PFAM: integrase family protein; KEGG: tin:Tint_1145 integrase family protein; integrase family protein 1652871 10103626 Alide_1580 Alicycliphilus denitrificans BC integrase family protein YP_004126224.1 1651537 R 596153 CDS YP_004126225.1 319762288 10103627 complement(1653351..1654697) 1 NC_014910.1 KEGG: dia:Dtpsy_1835 type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; type I secretion outer membrane protein 1654697 10103627 Alide_1581 Alicycliphilus denitrificans BC type I secretion outer membrane protein YP_004126225.1 1653351 R 596153 CDS YP_004126226.1 319762289 10103628 complement(1654714..1655052) 1 NC_014910.1 SMART: Rhodanese domain protein; KEGG: dia:Dtpsy_1836 rhodanese domain protein; rhodanese domain-containing protein 1655052 10103628 Alide_1582 Alicycliphilus denitrificans BC rhodanese domain-containing protein YP_004126226.1 1654714 R 596153 CDS YP_004126227.1 319762290 10103629 complement(1655071..1655781) 1 NC_014910.1 PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_1837 protein-L-isoaspartate(D-aspartate) O-methyltransferase; SMART: Ribosomal RNA adenine methylase transferase-like; protein-l-isoaspartate(d-aspartate) o-methyltransferase 1655781 10103629 Alide_1583 Alicycliphilus denitrificans BC protein-l-isoaspartate(d-aspartate) o-methyltransferase YP_004126227.1 1655071 R 596153 CDS YP_004126228.1 319762291 10103630 complement(1655832..1656494) 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: ajs:Ajs_2029 TetR family transcriptional regulator; regulatory protein tetr 1656494 10103630 Alide_1584 Alicycliphilus denitrificans BC regulatory protein tetr YP_004126228.1 1655832 R 596153 CDS YP_004126229.1 319762292 10103631 1656643..1657191 1 NC_014910.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: ajs:Ajs_2030 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 1657191 10103631 Alide_1585 Alicycliphilus denitrificans BC peptide methionine sulfoxide reductase YP_004126229.1 1656643 D 596153 CDS YP_004126230.1 319762293 10103632 1657216..1657599 1 NC_014910.1 KEGG: ajs:Ajs_2032 hypothetical protein; hypothetical protein 1657599 10103632 Alide_1586 Alicycliphilus denitrificans BC hypothetical protein YP_004126230.1 1657216 D 596153 CDS YP_004126231.1 319762294 10103633 1657772..1659823 1 NC_014910.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dia:Dtpsy_1842 TonB-dependent receptor; tonb-dependent receptor 1659823 10103633 Alide_1587 Alicycliphilus denitrificans BC tonb-dependent receptor YP_004126231.1 1657772 D 596153 CDS YP_004126232.1 319762295 10103634 1660326..1661198 1 NC_014910.1 KEGG: ajs:Ajs_2034 hypothetical protein; hypothetical protein 1661198 10103634 Alide_1588 Alicycliphilus denitrificans BC hypothetical protein YP_004126232.1 1660326 D 596153 CDS YP_004126233.1 319762296 10103635 1661250..1662470 1 NC_014910.1 KEGG: ajs:Ajs_2035 chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter 1662470 10103635 Alide_1589 Alicycliphilus denitrificans BC chromate transporter YP_004126233.1 1661250 D 596153 CDS YP_004126234.1 319762297 10103636 1662602..1663540 1 NC_014910.1 PFAM: Auxin Efflux Carrier; KEGG: dia:Dtpsy_1882 auxin efflux carrier; auxin efflux carrier 1663540 10103636 Alide_1590 Alicycliphilus denitrificans BC auxin efflux carrier YP_004126234.1 1662602 D 596153 CDS YP_004126235.1 319762298 10103637 complement(1663533..1664195) 1 NC_014910.1 TIGRFAM: pyridoxamine 5'-phosphate oxidase; KEGG: dia:Dtpsy_1881 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase 1664195 10103637 Alide_1591 Alicycliphilus denitrificans BC pyridoxamine 5'-phosphate oxidase YP_004126235.1 1663533 R 596153 CDS YP_004126236.1 319762299 10103638 complement(1664212..1664805) 1 NC_014910.1 PFAM: ChaC family protein; KEGG: dia:Dtpsy_1879 ChaC family protein; chac family protein 1664805 10103638 Alide_1592 Alicycliphilus denitrificans BC chac family protein YP_004126236.1 1664212 R 596153 CDS YP_004126237.1 319762300 10103639 1664868..1665389 1 NC_014910.1 PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein; ompa/motb domain-containing protein 1665389 10103639 Alide_1593 Alicycliphilus denitrificans BC ompa/motb domain-containing protein YP_004126237.1 1664868 D 596153 CDS YP_004126238.1 319762301 10103640 complement(1665438..1666484) 1 NC_014910.1 PFAM: protein of unknown function DUF72; KEGG: dia:Dtpsy_1999 protein of unknown function DUF72; hypothetical protein 1666484 10103640 Alide_1594 Alicycliphilus denitrificans BC hypothetical protein YP_004126238.1 1665438 R 596153 CDS YP_004126239.1 319762302 10103641 complement(1666485..1666889) 1 NC_014910.1 KEGG: dia:Dtpsy_1998 hypothetical protein; hypothetical protein 1666889 10103641 Alide_1595 Alicycliphilus denitrificans BC hypothetical protein YP_004126239.1 1666485 R 596153 CDS YP_004126240.1 319762303 10103642 1666982..1669366 1 NC_014910.1 KEGG: ajs:Ajs_1707 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; tex-like protein 1669366 10103642 Alide_1596 Alicycliphilus denitrificans BC tex-like protein YP_004126240.1 1666982 D 596153 CDS YP_004126241.1 319762304 10103643 complement(1669382..1670356) 1 NC_014910.1 KEGG: bbr:BB0544 hypothetical protein; hypothetical protein 1670356 10103643 Alide_1597 Alicycliphilus denitrificans BC hypothetical protein YP_004126241.1 1669382 R 596153 CDS YP_004126242.1 319762305 10103644 complement(1670379..1670777) 1 NC_014910.1 PFAM: protein of unknown function DUF35; KEGG: bbr:BB0545 hypothetical protein; hypothetical protein 1670777 10103644 Alide_1598 Alicycliphilus denitrificans BC hypothetical protein YP_004126242.1 1670379 R 596153 CDS YP_004126243.1 319762306 10103645 complement(1670774..1671955) 1 NC_014910.1 KEGG: bbr:BB0546 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 1671955 10103645 Alide_1599 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004126243.1 1670774 R 596153 CDS YP_004126244.1 319762307 10103646 complement(1671952..1672935) 1 NC_014910.1 KEGG: reu:Reut_A0842 hypothetical protein; hypothetical protein 1672935 10103646 Alide_1600 Alicycliphilus denitrificans BC hypothetical protein YP_004126244.1 1671952 R 596153 CDS YP_004126245.1 319762308 10103647 complement(1672973..1673773) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpd:RPD_4223 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 1673773 10103647 Alide_1601 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004126245.1 1672973 R 596153 CDS YP_004126246.1 319762309 10103648 complement(1673800..1675356) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB0547 ligase; AMP-dependent synthetase/ligase 1675356 10103648 Alide_1602 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004126246.1 1673800 R 596153 CDS YP_004126247.1 319762310 10103649 complement(1675362..1676354) 1 NC_014910.1 KEGG: bbr:BB0564 hypothetical protein; hypothetical protein 1676354 10103649 Alide_1603 Alicycliphilus denitrificans BC hypothetical protein YP_004126247.1 1675362 R 596153 CDS YP_004126248.1 319762311 10103650 1676445..1677452 1 NC_014910.1 KEGG: bbr:BB0548 LacI family regulatory protein; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; regulatory protein laci 1677452 10103650 Alide_1604 Alicycliphilus denitrificans BC regulatory protein laci YP_004126248.1 1676445 D 596153 CDS YP_004126249.1 319762312 10103651 complement(1677543..1678394) 1 NC_014910.1 PFAM: Citrate synthase; KEGG: rme:Rmet_4144 citrate synthase; citrate synthase 1678394 10103651 Alide_1605 Alicycliphilus denitrificans BC citrate synthase YP_004126249.1 1677543 R 596153 CDS YP_004126250.1 319762313 10103652 complement(1678391..1679593) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B4958 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 1679593 10103652 Alide_1606 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004126250.1 1678391 R 596153 CDS YP_004126251.1 319762314 10103653 complement(1679596..1680561) 1 NC_014910.1 KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein 1680561 10103653 Alide_1607 Alicycliphilus denitrificans BC hypothetical protein YP_004126251.1 1679596 R 596153 CDS YP_004126252.1 319762315 10103654 complement(1680594..1681553) 1 NC_014910.1 KEGG: rme:Rmet_4146 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein 1681553 10103654 Alide_1608 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004126252.1 1680594 R 596153 CDS YP_004126253.1 319762316 10103655 complement(1681604..1682614) 1 NC_014910.1 PFAM: amidohydrolase 2; KEGG: bam:Bamb_4804 amidohydrolase 2; amidohydrolase 1682614 10103655 Alide_1609 Alicycliphilus denitrificans BC amidohydrolase YP_004126253.1 1681604 R 596153 CDS YP_004126254.1 319762317 10103656 1682763..1683473 1 NC_014910.1 KEGG: cti:pRALTA_0434 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 1683473 10103656 Alide_1610 Alicycliphilus denitrificans BC regulatory protein iclr YP_004126254.1 1682763 D 596153 CDS YP_004126255.1 319762318 10103657 1683529..1684362 1 NC_014910.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_1708 signal transduction protein; metal-dependent hydrolase hdod 1684362 10103657 Alide_1611 Alicycliphilus denitrificans BC metal-dependent hydrolase hdod YP_004126255.1 1683529 D 596153 CDS YP_004126256.1 319762319 10103658 1684458..1685333 1 NC_014910.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ajs:Ajs_1712 hydratase/decarboxylase; fumarylacetoacetate (faa) hydrolase 1685333 10103658 Alide_1612 Alicycliphilus denitrificans BC fumarylacetoacetate (faa) hydrolase YP_004126256.1 1684458 D 596153 CDS YP_004126257.1 319762320 10103659 1685346..1686329 1 NC_014910.1 KEGG: ajs:Ajs_1713 alpha/beta hydrolase domain-containing protein; alpha/beta hydrolase 1686329 10103659 Alide_1613 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004126257.1 1685346 D 596153 CDS YP_004126258.1 319762321 10103660 1686339..1687199 1 NC_014910.1 PFAM: thioesterase superfamily protein; GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_1990 thioesterase superfamily protein; thioesterase superfamily protein 1687199 10103660 Alide_1614 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004126258.1 1686339 D 596153 CDS YP_004126259.1 319762322 10103661 complement(1687203..1687784) 1 NC_014910.1 PFAM: protein of unknown function DUF336; KEGG: dac:Daci_1203 hypothetical protein; hypothetical protein 1687784 10103661 Alide_1615 Alicycliphilus denitrificans BC hypothetical protein YP_004126259.1 1687203 R 596153 CDS YP_004126260.1 319762323 10103662 complement(1687809..1688453) 1 NC_014910.1 KEGG: dac:Daci_1204 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver 1688453 10103662 Alide_1616 Alicycliphilus denitrificans BC response regulator receiver YP_004126260.1 1687809 R 596153 CDS YP_004126261.1 319762324 10103663 complement(1688450..1689931) 1 NC_014910.1 KEGG: dac:Daci_1205 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 1689931 10103663 Alide_1617 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004126261.1 1688450 R 596153 CDS YP_004126262.1 319762325 10103664 complement(1689954..1691147) 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_2202 major facilitator transporter; major facilitator superfamily protein 1691147 10103664 Alide_1618 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004126262.1 1689954 R 596153 CDS YP_004126263.1 319762326 10103665 complement(1691140..1691631) 1 NC_014910.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dia:Dtpsy_2009 CMP/dCMP deaminase zinc-binding; cmp/dcmp deaminase zinc-binding protein 1691631 10103665 Alide_1619 Alicycliphilus denitrificans BC cmp/dcmp deaminase zinc-binding protein YP_004126263.1 1691140 R 596153 CDS YP_004126264.1 319762327 10103666 complement(1691665..1692606) 1 NC_014910.1 KEGG: ajs:Ajs_1715 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; folate-binding protein ygfz 1692606 10103666 Alide_1620 Alicycliphilus denitrificans BC folate-binding protein ygfz YP_004126264.1 1691665 R 596153 CDS YP_004126265.1 319762328 10103667 1692653..1693648 1 NC_014910.1 PFAM: aminodeoxychorismate lyase; KEGG: ajs:Ajs_1716 aminodeoxychorismate lyase; aminodeoxychorismate lyase 1693648 10103667 Alide_1621 Alicycliphilus denitrificans BC aminodeoxychorismate lyase YP_004126265.1 1692653 D 596153 CDS YP_004126266.1 319762329 10103668 1693645..1694301 1 NC_014910.1 TIGRFAM: thymidylate kinase; KEGG: dia:Dtpsy_1987 thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 1694301 10103668 Alide_1622 Alicycliphilus denitrificans BC thymidylate kinase YP_004126266.1 1693645 D 596153 CDS YP_004126267.1 319762330 10103669 1694298..1695293 1 NC_014910.1 KEGG: ajs:Ajs_1718 DNA-directed DNA polymerase; DNA-directed DNA polymerase 1695293 10103669 Alide_1623 Alicycliphilus denitrificans BC DNA-directed DNA polymerase YP_004126267.1 1694298 D 596153 CDS YP_004126268.1 319762331 10103670 1695310..1695669 1 NC_014910.1 PFAM: type IV pilus assembly PilZ; KEGG: dia:Dtpsy_1985 type IV pilus assembly PilZ; type IV pilus assembly pilz 1695669 10103670 Alide_1624 Alicycliphilus denitrificans BC type IV pilus assembly pilz YP_004126268.1 1695310 D 596153 CDS YP_004126269.1 319762332 10103671 1695731..1696540 1 NC_014910.1 KEGG: ajs:Ajs_1720 TatD family hydrolase; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; hydrolase, tatd family 1696540 10103671 Alide_1625 Alicycliphilus denitrificans BC hydrolase, tatd family YP_004126269.1 1695731 D 596153 CDS YP_004126270.1 319762333 10103672 1696537..1697217 1 NC_014910.1 KEGG: dia:Dtpsy_1983 ankyrin; hypothetical protein 1697217 10103672 Alide_1626 Alicycliphilus denitrificans BC hypothetical protein YP_004126270.1 1696537 D 596153 CDS YP_004126271.1 319762334 10103673 1697412..1697657 1 NC_014910.1 KEGG: hoh:Hoch_1597 hypothetical protein; hypothetical protein 1697657 10103673 Alide_1627 Alicycliphilus denitrificans BC hypothetical protein YP_004126271.1 1697412 D 596153 CDS YP_004126272.1 319762335 10103674 1697689..1698906 1 NC_014910.1 KEGG: app:CAP2UW1_0424 hypothetical protein; hypothetical protein 1698906 10103674 Alide_1628 Alicycliphilus denitrificans BC hypothetical protein YP_004126272.1 1697689 D 596153 CDS YP_004126273.1 319762336 10103675 complement(1698910..1699587) 1 NC_014910.1 KEGG: aav:Aave_3515 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 1699587 10103675 Alide_1629 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004126273.1 1698910 R 596153 CDS YP_004126274.1 319762337 10103676 1699851..1701098 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_B1760 major facilitator superfamily transporter AAHS family protein; major facilitator superfamily protein 1701098 10103676 Alide_1630 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004126274.1 1699851 D 596153 CDS YP_004126275.1 319762338 10103677 1701126..1701887 1 NC_014910.1 PFAM: LamB/YcsF family protein; KEGG: aav:Aave_3513 LamB/YcsF family protein; lamb/ycsf family protein 1701887 10103677 Alide_1631 Alicycliphilus denitrificans BC lamb/ycsf family protein YP_004126275.1 1701126 D 596153 CDS YP_004126276.1 319762339 10103678 1701910..1702722 1 NC_014910.1 PFAM: protein of unknown function DUF1445; KEGG: reh:H16_B1759 hypothetical protein; hypothetical protein 1702722 10103678 Alide_1632 Alicycliphilus denitrificans BC hypothetical protein YP_004126276.1 1701910 D 596153 CDS YP_004126277.1 319762340 10103679 1702730..1704331 1 NC_014910.1 SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: urea amidolyase related protein; KEGG: reu:Reut_A2450 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; urea amidolyase 1704331 10103679 Alide_1633 Alicycliphilus denitrificans BC urea amidolyase YP_004126277.1 1702730 D 596153 CDS YP_004126278.1 319762341 10103680 1704325..1706067 1 NC_014910.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: dac:Daci_5726 carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthase l chain ATP-binding protein 1706067 10103680 Alide_1634 Alicycliphilus denitrificans BC carbamoyl-phosphate synthase l chain ATP-binding protein YP_004126278.1 1704325 D 596153 CDS YP_004126279.1 319762342 10103681 complement(1706130..1707911) 1 NC_014910.1 TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dia:Dtpsy_1982 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; SMART: AAA ATPase; lipid a ABC transporter ATPase/inner membrane protein 1707911 10103681 Alide_1635 Alicycliphilus denitrificans BC lipid a ABC transporter ATPase/inner membrane protein YP_004126279.1 1706130 R 596153 CDS YP_004126280.1 319762343 10103682 1708045..1709367 1 NC_014910.1 KEGG: dia:Dtpsy_1981 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain-containing protein; WD40-like beta Propeller containing protein; tol-pal system beta propeller repeat protein TolB 1709367 10103682 Alide_1636 Alicycliphilus denitrificans BC tol-pal system beta propeller repeat protein TolB YP_004126280.1 1708045 D 596153 CDS YP_004126281.1 319762344 10103683 1709411..1709953 1 NC_014910.1 KEGG: dia:Dtpsy_1980 peptidoglycan-associated lipoprotein; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 1709953 10103683 Alide_1637 Alicycliphilus denitrificans BC peptidoglycan-associated lipoprotein YP_004126281.1 1709411 D 596153 CDS YP_004126282.1 319762345 10103684 1709953..1710741 1 NC_014910.1 TIGRFAM: tol-pal system protein YbgF; KEGG: ajs:Ajs_1725 TPR repeat-containing protein; tol-pal system protein ybgf 1710741 10103684 Alide_1638 Alicycliphilus denitrificans BC tol-pal system protein ybgf YP_004126282.1 1709953 D 596153 CDS YP_004126283.1 319762346 10103685 1710750..1711514 1 NC_014910.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: aav:Aave_3403 UBA/ThiF-type NAD/FAD binding protein; uba/thif-type nad/fad binding protein 1711514 10103685 Alide_1639 Alicycliphilus denitrificans BC uba/thif-type nad/fad binding protein YP_004126283.1 1710750 D 596153 CDS YP_004126284.1 319762347 10103687 complement(1711662..1712675) 1 NC_014910.1 PFAM: integrase family protein; KEGG: hse:Hsero_0876 site-specific phage recombinase/integrase; integrase family protein 1712675 10103687 Alide_1640 Alicycliphilus denitrificans BC integrase family protein YP_004126284.1 1711662 R 596153 CDS YP_004126285.1 319762348 10103688 complement(1713077..1713679) 1 NC_014910.1 manually curated; KEGG: rpt:Rpal_3050 hypothetical protein; hypothetical protein 1713679 10103688 Alide_1641 Alicycliphilus denitrificans BC hypothetical protein YP_004126285.1 1713077 R 596153 CDS YP_004126286.1 319762349 10103689 complement(1713776..1713994) 1 NC_014910.1 KEGG: pan:PODANSg1201 hypothetical protein; hypothetical protein 1713994 10103689 Alide_1642 Alicycliphilus denitrificans BC hypothetical protein YP_004126286.1 1713776 R 596153 CDS YP_004126287.1 319762350 10103690 complement(1713987..1714727) 1 NC_014910.1 KEGG: bph:Bphy_1918 hypothetical protein; hypothetical protein 1714727 10103690 Alide_1643 Alicycliphilus denitrificans BC hypothetical protein YP_004126287.1 1713987 R 596153 CDS YP_004126288.1 319762351 10103691 complement(1714724..1714933) 1 NC_014910.1 KEGG: spx:SPG_1105 hypothetical protein; hypothetical protein 1714933 10103691 Alide_1644 Alicycliphilus denitrificans BC hypothetical protein YP_004126288.1 1714724 R 596153 CDS YP_004126289.1 319762352 10103692 complement(1714923..1715348) 1 NC_014910.1 KEGG: mes:Meso_1184 hypothetical protein; hypothetical protein 1715348 10103692 Alide_1645 Alicycliphilus denitrificans BC hypothetical protein YP_004126289.1 1714923 R 596153 CDS YP_004126290.1 319762353 10103693 complement(1715345..1715581) 1 NC_014910.1 KEGG: scb:SCAB_33391 hypothetical protein; hypothetical protein 1715581 10103693 Alide_1646 Alicycliphilus denitrificans BC hypothetical protein YP_004126290.1 1715345 R 596153 CDS YP_004126291.1 319762354 10103694 complement(1715612..1716016) 1 NC_014910.1 KEGG: dac:Daci_3203 hypothetical protein; hypothetical protein 1716016 10103694 Alide_1647 Alicycliphilus denitrificans BC hypothetical protein YP_004126291.1 1715612 R 596153 CDS YP_004126292.1 319762355 10103695 complement(1716016..1716663) 1 NC_014910.1 PFAM: YqaJ viral recombinase family; KEGG: dac:Daci_1915 exonuclease, phage-type; yqaj viral recombinase family 1716663 10103695 Alide_1648 Alicycliphilus denitrificans BC yqaj viral recombinase family YP_004126292.1 1716016 R 596153 CDS YP_004126293.1 319762356 10103696 complement(1716660..1717478) 1 NC_014910.1 PFAM: ERF family protein; KEGG: mrd:Mrad2831_5739 ERF family protein; erf family protein 1717478 10103696 Alide_1649 Alicycliphilus denitrificans BC erf family protein YP_004126293.1 1716660 R 596153 CDS YP_004126294.1 319762357 10103697 complement(1717590..1717691) 1 NC_014910.1 hypothetical protein 1717691 10103697 Alide_1650 Alicycliphilus denitrificans BC hypothetical protein YP_004126294.1 1717590 R 596153 CDS YP_004126295.1 319762358 10103698 complement(1717688..1717945) 1 NC_014910.1 KEGG: dac:Daci_1917 hypothetical protein; hypothetical protein 1717945 10103698 Alide_1651 Alicycliphilus denitrificans BC hypothetical protein YP_004126295.1 1717688 R 596153 CDS YP_004126296.1 319762359 10103699 complement(1717942..1718136) 1 NC_014910.1 KEGG: sml:Smlt2731 general secretion pathway protein H; hypothetical protein 1718136 10103699 Alide_1652 Alicycliphilus denitrificans BC hypothetical protein YP_004126296.1 1717942 R 596153 CDS YP_004126297.1 319762360 10103700 complement(1718365..1718586) 1 NC_014910.1 KEGG: bta:505723 La ribonucleoprotein domain family, member 4B; la ribonucleoprotein family protein 1718586 10103700 Alide_1653 Alicycliphilus denitrificans BC la ribonucleoprotein family protein YP_004126297.1 1718365 R 596153 CDS YP_004126298.1 319762361 10103701 complement(1719473..1719718) 1 NC_014910.1 KEGG: tgr:Tgr7_1656 hypothetical protein; hypothetical protein 1719718 10103701 Alide_1654 Alicycliphilus denitrificans BC hypothetical protein YP_004126298.1 1719473 R 596153 CDS YP_004126299.1 319762362 10103702 complement(1719747..1720067) 1 NC_014910.1 KEGG: pag:PLES_07901 hypothetical protein; hypothetical protein 1720067 10103702 Alide_1655 Alicycliphilus denitrificans BC hypothetical protein YP_004126299.1 1719747 R 596153 CDS YP_004126300.1 319762363 10103703 1720538..1721392 1 NC_014910.1 KEGG: vha:VIBHAR_02019 hypothetical protein; hypothetical protein 1721392 10103703 Alide_1656 Alicycliphilus denitrificans BC hypothetical protein YP_004126300.1 1720538 D 596153 CDS YP_004126301.1 319762364 10103704 1721458..1721697 1 NC_014910.1 KEGG: vap:Vapar_6373 hypothetical protein; hypothetical protein 1721697 10103704 Alide_1657 Alicycliphilus denitrificans BC hypothetical protein YP_004126301.1 1721458 D 596153 CDS YP_004126302.1 319762365 10103705 1721814..1723001 1 NC_014910.1 KEGG: tmz:Tmz1t_0111 hypothetical protein; hypothetical protein 1723001 10103705 Alide_1658 Alicycliphilus denitrificans BC hypothetical protein YP_004126302.1 1721814 D 596153 CDS YP_004126303.1 319762366 10103706 complement(1723072..1723551) 1 NC_014910.1 KEGG: vap:Vapar_4558 nuclease (SNase domain protein); PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); nuclease (snase domain-containing protein) 1723551 10103706 Alide_1659 Alicycliphilus denitrificans BC nuclease (snase domain-containing protein) YP_004126303.1 1723072 R 596153 CDS YP_004126304.1 319762367 10103707 complement(1723554..1724177) 1 NC_014910.1 PFAM: protein of unknown function DUF1555; KEGG: gsu:GSU1949 hypothetical protein; hypothetical protein 1724177 10103707 Alide_1660 Alicycliphilus denitrificans BC hypothetical protein YP_004126304.1 1723554 R 596153 CDS YP_004126305.1 319762368 10103709 complement(1725180..1725950) 1 NC_014910.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: aav:Aave_1607 prophage repressor; peptidase s24/s26a/s26b 1725950 10103709 Alide_1662 Alicycliphilus denitrificans BC peptidase s24/s26a/s26b YP_004126305.1 1725180 R 596153 CDS YP_004126306.1 319762369 10103710 1725964..1726182 1 NC_014910.1 KEGG: mbn:Mboo_1574 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1726182 10103710 Alide_1663 Alicycliphilus denitrificans BC helix-turn-helix domain-containing protein YP_004126306.1 1725964 D 596153 CDS YP_004126307.1 319762370 10103711 complement(1726206..1726451) 1 NC_014910.1 KEGG: chl:Chy400_3663 secretion protein HlyD family protein; hypothetical protein 1726451 10103711 Alide_1664 Alicycliphilus denitrificans BC hypothetical protein YP_004126307.1 1726206 R 596153 CDS YP_004126308.1 319762371 10103712 1726611..1726979 1 NC_014910.1 KEGG: pca:Pcar_1084 transposase and inactivated derivatives; hypothetical protein 1726979 10103712 Alide_1665 Alicycliphilus denitrificans BC hypothetical protein YP_004126308.1 1726611 D 596153 CDS YP_004126309.1 319762372 10103713 1726976..1727167 1 NC_014910.1 hypothetical protein 1727167 10103713 Alide_1666 Alicycliphilus denitrificans BC hypothetical protein YP_004126309.1 1726976 D 596153 CDS YP_004126310.1 319762373 10103714 1727169..1727369 1 NC_014910.1 KEGG: scb:SCAB_27931 neutral zinc metalloprotease; neutral zinc metalloprotease 1727369 10103714 Alide_1667 Alicycliphilus denitrificans BC neutral zinc metalloprotease YP_004126310.1 1727169 D 596153 CDS YP_004126311.1 319762374 10103715 1727369..1728274 1 NC_014910.1 KEGG: ssn:SSON_1580 unknown prophage protein; hypothetical protein 1728274 10103715 Alide_1668 Alicycliphilus denitrificans BC hypothetical protein YP_004126311.1 1727369 D 596153 CDS YP_004126312.1 319762375 10103716 1728271..1729656 1 NC_014910.1 PFAM: DnaB domain protein helicase domain protein; KEGG: bvi:Bcep1808_1163 DnaB domain-containing protein; DnaB domain-containing protein 1729656 10103716 Alide_1669 Alicycliphilus denitrificans BC DnaB domain-containing protein YP_004126312.1 1728271 D 596153 CDS YP_004126313.1 319762376 10103717 1729660..1730163 1 NC_014910.1 KEGG: aav:Aave_1760 hypothetical protein; hypothetical protein 1730163 10103717 Alide_1670 Alicycliphilus denitrificans BC hypothetical protein YP_004126313.1 1729660 D 596153 CDS YP_004126314.1 319762377 10103718 1730167..1730361 1 NC_014910.1 KEGG: sen:SACE_5054 mannitol dehydrogenase; hypothetical protein 1730361 10103718 Alide_1671 Alicycliphilus denitrificans BC hypothetical protein YP_004126314.1 1730167 D 596153 CDS YP_004126315.1 319762378 10103719 1730361..1730693 1 NC_014910.1 PFAM: endodeoxyribonuclease RusA; KEGG: bav:BAV1307 phage endonuclease; endodeoxyribonuclease RusA 1730693 10103719 Alide_1672 Alicycliphilus denitrificans BC endodeoxyribonuclease RusA YP_004126315.1 1730361 D 596153 CDS YP_004126316.1 319762379 10103720 1730686..1731207 1 NC_014910.1 KEGG: bpt:Bpet0967 hypothetical protein; hypothetical protein 1731207 10103720 Alide_1673 Alicycliphilus denitrificans BC hypothetical protein YP_004126316.1 1730686 D 596153 CDS YP_004126317.1 319762380 10103721 1731204..1731704 1 NC_014910.1 KEGG: aav:Aave_1763 hypothetical protein; hypothetical protein 1731704 10103721 Alide_1674 Alicycliphilus denitrificans BC hypothetical protein YP_004126317.1 1731204 D 596153 CDS YP_004126318.1 319762381 10103722 1731673..1732185 1 NC_014910.1 KEGG: aav:Aave_1697 hypothetical protein; hypothetical protein 1732185 10103722 Alide_1675 Alicycliphilus denitrificans BC hypothetical protein YP_004126318.1 1731673 D 596153 CDS YP_004126319.1 319762382 10103723 1732241..1733017 1 NC_014910.1 KEGG: aav:Aave_2352 hypothetical protein; hypothetical protein 1733017 10103723 Alide_1676 Alicycliphilus denitrificans BC hypothetical protein YP_004126319.1 1732241 D 596153 CDS YP_004126320.1 319762383 10103724 1733020..1734627 1 NC_014910.1 KEGG: aav:Aave_2353 terminase large subunit protein; terminase large subunit protein 1734627 10103724 Alide_1677 Alicycliphilus denitrificans BC terminase large subunit protein YP_004126320.1 1733020 D 596153 CDS YP_004126321.1 319762384 10103725 1734634..1736901 1 NC_014910.1 KEGG: aav:Aave_1700 phage associated protein; phage associated protein 1736901 10103725 Alide_1678 Alicycliphilus denitrificans BC phage associated protein YP_004126321.1 1734634 D 596153 CDS YP_004126322.1 319762385 10103726 1737077..1738075 1 NC_014910.1 KEGG: aav:Aave_1702 hypothetical protein; hypothetical protein 1738075 10103726 Alide_1679 Alicycliphilus denitrificans BC hypothetical protein YP_004126322.1 1737077 D 596153 CDS YP_004126323.1 319762386 10103727 1738144..1739433 1 NC_014910.1 KEGG: ngk:NGK_0673 phage associated protein; phage associated protein 1739433 10103727 Alide_1680 Alicycliphilus denitrificans BC phage associated protein YP_004126323.1 1738144 D 596153 CDS YP_004126324.1 319762387 10103728 1739505..1739981 1 NC_014910.1 KEGG: aav:Aave_1704 phage associated protein; phage associated protein 1739981 10103728 Alide_1681 Alicycliphilus denitrificans BC phage associated protein YP_004126324.1 1739505 D 596153 CDS YP_004126325.1 319762388 10103729 1740000..1740488 1 NC_014910.1 KEGG: aav:Aave_1705 phage associated protein; hypothetical protein 1740488 10103729 Alide_1682 Alicycliphilus denitrificans BC hypothetical protein YP_004126325.1 1740000 D 596153 CDS YP_004126326.1 319762389 10103730 1740490..1741155 1 NC_014910.1 KEGG: aav:Aave_1706 hypothetical protein; hypothetical protein 1741155 10103730 Alide_1683 Alicycliphilus denitrificans BC hypothetical protein YP_004126326.1 1740490 D 596153 CDS YP_004126327.1 319762390 10103731 1741165..1743267 1 NC_014910.1 KEGG: aav:Aave_1716 hypothetical protein; hypothetical protein 1743267 10103731 Alide_1684 Alicycliphilus denitrificans BC hypothetical protein YP_004126327.1 1741165 D 596153 CDS YP_004126328.1 319762391 10103732 complement(1743278..1744084) 1 NC_014910.1 KEGG: bpr:GBP346_A1728 hypothetical protein; hypothetical protein 1744084 10103732 Alide_1685 Alicycliphilus denitrificans BC hypothetical protein YP_004126328.1 1743278 R 596153 CDS YP_004126329.1 319762392 10103733 1744215..1745294 1 NC_014910.1 KEGG: neu:NE1381 hypothetical protein; hypothetical protein 1745294 10103733 Alide_1686 Alicycliphilus denitrificans BC hypothetical protein YP_004126329.1 1744215 D 596153 CDS YP_004126330.1 319762393 10103734 1745291..1745614 1 NC_014910.1 KEGG: hse:Hsero_1548 hypothetical protein; hypothetical protein 1745614 10103734 Alide_1687 Alicycliphilus denitrificans BC hypothetical protein YP_004126330.1 1745291 D 596153 CDS YP_004126331.1 319762394 10103735 1745632..1746114 1 NC_014910.1 manually curated; KEGG: hse:Hsero_1549 hypothetical protein; hypothetical protein 1746114 10103735 Alide_1688 Alicycliphilus denitrificans BC hypothetical protein YP_004126331.1 1745632 D 596153 CDS YP_004126332.1 319762395 10103736 complement(1746187..1746852) 1 NC_014910.1 KEGG: lpf:lpl0182 hypothetical protein; hypothetical protein 1746852 10103736 Alide_1689 Alicycliphilus denitrificans BC hypothetical protein YP_004126332.1 1746187 R 596153 CDS YP_004126333.1 319762396 10103737 complement(1746806..1747702) 1 NC_014910.1 PFAM: SMF family protein; KEGG: amc:MADE_00299 smf protein; smf family protein 1747702 10103737 Alide_1690 Alicycliphilus denitrificans BC smf family protein YP_004126333.1 1746806 R 596153 CDS YP_004126334.1 319762397 10103738 1747850..1756453 1 NC_014910.1 KEGG: ctt:CtCNB1_2656 hypothetical protein; hypothetical protein 1756453 10103738 Alide_1691 Alicycliphilus denitrificans BC hypothetical protein YP_004126334.1 1747850 D 596153 CDS YP_004126335.1 319762398 10103739 1756529..1756930 1 NC_014910.1 KEGG: rer:RER_25240 hypothetical protein; hypothetical protein 1756930 10103739 Alide_1692 Alicycliphilus denitrificans BC hypothetical protein YP_004126335.1 1756529 D 596153 CDS YP_004126336.1 319762399 10103740 1756940..1758016 1 NC_014910.1 KEGG: pag:PLES_13611 hypothetical protein; hypothetical protein 1758016 10103740 Alide_1693 Alicycliphilus denitrificans BC hypothetical protein YP_004126336.1 1756940 D 596153 CDS YP_004126337.1 319762400 10103741 1758026..1758706 1 NC_014910.1 KEGG: olu:OSTLU_23918 predicted protein; hypothetical protein 1758706 10103741 Alide_1694 Alicycliphilus denitrificans BC hypothetical protein YP_004126337.1 1758026 D 596153 CDS YP_004126338.1 319762401 10103742 1758700..1759866 1 NC_014910.1 KEGG: aav:Aave_1709 hypothetical protein; hypothetical protein 1759866 10103742 Alide_1695 Alicycliphilus denitrificans BC hypothetical protein YP_004126338.1 1758700 D 596153 CDS YP_004126339.1 319762402 10103743 1759863..1762352 1 NC_014910.1 KEGG: gym:GYMC10_1290 transcriptional regulator, AraC family; hypothetical protein 1762352 10103743 Alide_1696 Alicycliphilus denitrificans BC hypothetical protein YP_004126339.1 1759863 D 596153 CDS YP_004126340.1 319762403 10103744 1762352..1762783 1 NC_014910.1 KEGG: sml:Smlt1972; hypothetical protein 1762783 10103744 Alide_1697 Alicycliphilus denitrificans BC hypothetical protein YP_004126340.1 1762352 D 596153 CDS YP_004126341.1 319762404 10103745 1762786..1764591 1 NC_014910.1 KEGG: aav:Aave_1715 hypothetical protein; hypothetical protein 1764591 10103745 Alide_1698 Alicycliphilus denitrificans BC hypothetical protein YP_004126341.1 1762786 D 596153 CDS YP_004126342.1 319762405 10103746 1764649..1765068 1 NC_014910.1 KEGG: aav:Aave_1722 hypothetical protein; hypothetical protein 1765068 10103746 Alide_1699 Alicycliphilus denitrificans BC hypothetical protein YP_004126342.1 1764649 D 596153 CDS YP_004126343.1 319762406 10103747 1765065..1765601 1 NC_014910.1 KEGG: aav:Aave_1723 hypothetical protein; hypothetical protein 1765601 10103747 Alide_1700 Alicycliphilus denitrificans BC hypothetical protein YP_004126343.1 1765065 D 596153 CDS YP_004126344.1 319762407 10103748 1765605..1766123 1 NC_014910.1 KEGG: aav:Aave_1724 hypothetical protein; hypothetical protein 1766123 10103748 Alide_1701 Alicycliphilus denitrificans BC hypothetical protein YP_004126344.1 1765605 D 596153 CDS YP_004126345.1 319762408 10103749 1766135..1767376 1 NC_014910.1 KEGG: ent:Ent638_0148 hypothetical protein; hypothetical protein 1767376 10103749 Alide_1702 Alicycliphilus denitrificans BC hypothetical protein YP_004126345.1 1766135 D 596153 CDS YP_004126346.1 319762409 10103750 1767437..1767742 1 NC_014910.1 KEGG: aav:Aave_1728 hypothetical protein; hypothetical protein 1767742 10103750 Alide_1703 Alicycliphilus denitrificans BC hypothetical protein YP_004126346.1 1767437 D 596153 CDS YP_004126347.1 319762410 10103751 1767739..1768323 1 NC_014910.1 KEGG: bbr:BB3482 phage lysozyme; phage lysozyme 1768323 10103751 Alide_1704 Alicycliphilus denitrificans BC phage lysozyme YP_004126347.1 1767739 D 596153 CDS YP_004126348.1 319762411 10103752 1768320..1768583 1 NC_014910.1 KEGG: pha:PSHAa0938 hypothetical protein; hypothetical protein 1768583 10103752 Alide_1705 Alicycliphilus denitrificans BC hypothetical protein YP_004126348.1 1768320 D 596153 CDS YP_004126349.1 319762412 10103753 1768624..1769091 1 NC_014910.1 manually curated; KEGG: aav:Aave_2360 hypothetical protein; hypothetical protein 1769091 10103753 Alide_1706 Alicycliphilus denitrificans BC hypothetical protein YP_004126349.1 1768624 D 596153 CDS YP_004126350.1 319762413 10103754 complement(1769104..1769496) 1 NC_014910.1 PFAM: Uncharacterised protein family UPF0150; KEGG: bpa:BPP2077 hypothetical protein; hypothetical protein 1769496 10103754 Alide_1707 Alicycliphilus denitrificans BC hypothetical protein YP_004126350.1 1769104 R 596153 CDS YP_004126351.1 319762414 10103755 complement(1769524..1769706) 1 NC_014910.1 PFAM: YcfA family protein; KEGG: bpa:BPP2078 hypothetical protein; hypothetical protein 1769706 10103755 Alide_1708 Alicycliphilus denitrificans BC hypothetical protein YP_004126351.1 1769524 R 596153 CDS YP_004126352.1 319762415 10103756 1769798..1770088 1 NC_014910.1 KEGG: dac:Daci_1655 hypothetical protein; hypothetical protein 1770088 10103756 Alide_1709 Alicycliphilus denitrificans BC hypothetical protein YP_004126352.1 1769798 D 596153 CDS YP_004126353.1 319762416 10103757 1770085..1770345 1 NC_014910.1 KEGG: dac:Daci_1656 hypothetical protein; hypothetical protein 1770345 10103757 Alide_1710 Alicycliphilus denitrificans BC hypothetical protein YP_004126353.1 1770085 D 596153 CDS YP_004126354.1 319762417 10103758 complement(1771237..1771473) 1 NC_014910.1 KEGG: vei:Veis_5041 hypothetical protein; hypothetical protein 1771473 10103758 Alide_1711 Alicycliphilus denitrificans BC hypothetical protein YP_004126354.1 1771237 R 596153 CDS YP_004126355.1 319762418 10103759 complement(1771476..1771712) 1 NC_014910.1 KEGG: saq:Sare_4718 pantoate--beta-alanine ligase; hypothetical protein 1771712 10103759 Alide_1712 Alicycliphilus denitrificans BC hypothetical protein YP_004126355.1 1771476 R 596153 CDS YP_004126356.1 319762419 10103762 1774166..1775152 1 NC_014910.1 PFAM: transposase IS4 family protein; KEGG: ajs:Ajs_3395 transposase, IS4 family protein; transposase is4 family protein 1775152 10103762 Alide_1715 Alicycliphilus denitrificans BC transposase is4 family protein YP_004126356.1 1774166 D 596153 CDS YP_004126357.1 319762420 10103764 1775921..1776865 1 NC_014910.1 KEGG: mea:Mex_2p0814 hypothetical protein; hypothetical protein 1776865 10103764 Alide_1717 Alicycliphilus denitrificans BC hypothetical protein YP_004126357.1 1775921 D 596153 CDS YP_004126358.1 319762421 10103765 complement(1777672..1778493) 1 NC_014910.1 KEGG: mpt:Mpe_A2996 transposase; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; istb domain-containing protein ATP-binding protein 1778493 10103765 Alide_1718 Alicycliphilus denitrificans BC istb domain-containing protein ATP-binding protein YP_004126358.1 1777672 R 596153 CDS YP_004126359.1 319762422 10103766 complement(1778490..1780001) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_6160 integrase catalytic subunit; integrase catalytic region protein 1780001 10103766 Alide_1719 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004126359.1 1778490 R 596153 CDS YP_004126360.1 319762423 10103767 complement(1780095..1781576) 1 NC_014910.1 KEGG: mms:mma_3457 hypothetical protein; hypothetical protein 1781576 10103767 Alide_1720 Alicycliphilus denitrificans BC hypothetical protein YP_004126360.1 1780095 R 596153 CDS YP_004126361.1 319762424 10103768 complement(1781573..1782496) 1 NC_014910.1 KEGG: lch:Lcho_3476 hypothetical protein; hypothetical protein 1782496 10103768 Alide_1721 Alicycliphilus denitrificans BC hypothetical protein YP_004126361.1 1781573 R 596153 CDS YP_004126362.1 319762425 10103769 complement(1782579..1782818) 1 NC_014910.1 manually curated; KEGG: ajs:Ajs_3336 hypothetical protein; hypothetical protein 1782818 10103769 Alide_1722 Alicycliphilus denitrificans BC hypothetical protein YP_004126362.1 1782579 R 596153 CDS YP_004126363.1 319762426 10103770 complement(1782983..1783840) 1 NC_014910.1 KEGG: lch:Lcho_3471 hypothetical protein; hypothetical protein 1783840 10103770 Alide_1723 Alicycliphilus denitrificans BC hypothetical protein YP_004126363.1 1782983 R 596153 CDS YP_004126364.1 319762427 10103771 complement(1784162..1785499) 1 NC_014910.1 KEGG: ajs:Ajs_3340 phage integrase family protein; manually curated; PFAM: integrase family protein; integrase family protein 1785499 10103771 Alide_1724 Alicycliphilus denitrificans BC integrase family protein YP_004126364.1 1784162 R 596153 CDS YP_004126365.1 319762428 10103772 1785915..1786970 1 NC_014910.1 KEGG: aav:Aave_2648 signal peptide protein; abc-type nitrate/sulfonate/bicarbonate transporter periplasmic ligand binding subunit 1786970 10103772 Alide_1725 Alicycliphilus denitrificans BC abc-type nitrate/sulfonate/bicarbonate transporter periplasmic ligand binding subunit YP_004126365.1 1785915 D 596153 CDS YP_004126366.1 319762429 10103773 1787069..1787221 1 NC_014910.1 KEGG: dia:Dtpsy_1977 hypothetical protein; hypothetical protein 1787221 10103773 Alide_1726 Alicycliphilus denitrificans BC hypothetical protein YP_004126366.1 1787069 D 596153 CDS YP_004126367.1 319762430 10103774 complement(1787239..1788753) 1 NC_014910.1 PFAM: Lytic transglycosylase catalytic; MLTD_N domain protein; Peptidoglycan-binding lysin domain; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic; lytic transglycosylase 1788753 10103774 Alide_1727 Alicycliphilus denitrificans BC lytic transglycosylase YP_004126367.1 1787239 R 596153 CDS YP_004126368.1 319762431 10103775 complement(1788750..1789520) 1 NC_014910.1 TIGRFAM: hydroxyacylglutathione hydrolase; KEGG: dia:Dtpsy_1975 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 1789520 10103775 Alide_1728 Alicycliphilus denitrificans BC hydroxyacylglutathione hydrolase YP_004126368.1 1788750 R 596153 CDS YP_004126369.1 319762432 10103776 1789525..1790307 1 NC_014910.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_1744 methyltransferase type 11; type 11 methyltransferase 1790307 10103776 Alide_1729 Alicycliphilus denitrificans BC type 11 methyltransferase YP_004126369.1 1789525 D 596153 CDS YP_004126370.1 319762433 10103777 1790353..1790799 1 NC_014910.1 PFAM: ribonuclease H; KEGG: dia:Dtpsy_1973 ribonuclease H; ribonuclease h 1790799 10103777 Alide_1730 Alicycliphilus denitrificans BC ribonuclease h YP_004126370.1 1790353 D 596153 CDS YP_004126371.1 319762434 10103778 complement(1790902..1792119) 1 NC_014910.1 PFAM: aminotransferase class I and II; KEGG: rso:RSp1232 aspartate aminotransferase A protein; aminotransferase class i and ii 1792119 10103778 Alide_1731 Alicycliphilus denitrificans BC aminotransferase class i and ii YP_004126371.1 1790902 R 596153 CDS YP_004126372.1 319762435 10103779 complement(1792116..1792748) 1 NC_014910.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2989 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 1792748 10103779 Alide_1732 Alicycliphilus denitrificans BC dimethylmenaquinone methyltransferase YP_004126372.1 1792116 R 596153 CDS YP_004126373.1 319762436 10103780 complement(1792754..1793428) 1 NC_014910.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2990 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 1793428 10103780 Alide_1733 Alicycliphilus denitrificans BC dimethylmenaquinone methyltransferase YP_004126373.1 1792754 R 596153 CDS YP_004126374.1 319762437 10103781 1793567..1794493 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rso:RS03179 transcription regulator protein; LysR family transcriptional regulator 1794493 10103781 Alide_1734 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126374.1 1793567 D 596153 CDS YP_004126375.1 319762438 10103782 1794647..1795549 1 NC_014910.1 KEGG: aav:Aave_4073 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 1795549 10103782 Alide_1735 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004126375.1 1794647 D 596153 CDS YP_004126376.1 319762439 10103783 1795585..1796262 1 NC_014910.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsl:RPSI07_mp1263 dimethylmenaquinone methyltransferase; protein; dimethylmenaquinone methyltransferase 1796262 10103783 Alide_1736 Alicycliphilus denitrificans BC dimethylmenaquinone methyltransferase YP_004126376.1 1795585 D 596153 CDS YP_004126377.1 319762440 10103784 1796342..1797319 1 NC_014910.1 KEGG: mms:mma_2446 tricarboxylate binding receptor; tricarboxylate binding receptor 1797319 10103784 Alide_1737 Alicycliphilus denitrificans BC tricarboxylate binding receptor YP_004126377.1 1796342 D 596153 CDS YP_004126378.1 319762441 10103785 complement(1797306..1797701) 1 NC_014910.1 KEGG: dac:Daci_4475 hypothetical protein; hypothetical protein 1797701 10103785 Alide_1738 Alicycliphilus denitrificans BC hypothetical protein YP_004126378.1 1797306 R 596153 CDS YP_004126379.1 319762442 10103786 complement(1797698..1798024) 1 NC_014910.1 PFAM: Thioredoxin domain-containing protein; KEGG: dia:Dtpsy_1972 thioredoxin domain protein; thioredoxin domain-containing protein 1798024 10103786 Alide_1739 Alicycliphilus denitrificans BC thioredoxin domain-containing protein YP_004126379.1 1797698 R 596153 CDS YP_004126380.1 319762443 10103787 complement(1798026..1799384) 1 NC_014910.1 KEGG: dia:Dtpsy_1971 molybdenum cofactor synthesis domain protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdenum cofactor synthesis domain-containing protein 1799384 10103787 Alide_1740 Alicycliphilus denitrificans BC molybdenum cofactor synthesis domain-containing protein YP_004126380.1 1798026 R 596153 CDS YP_004126381.1 319762444 10103788 complement(1799371..1799946) 1 NC_014910.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_2657 GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase 1799946 10103788 Alide_1741 Alicycliphilus denitrificans BC Gcn5-like N-acetyltransferase YP_004126381.1 1799371 R 596153 CDS YP_004126382.1 319762445 10103789 complement(1799943..1800575) 1 NC_014910.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: dia:Dtpsy_1970 molybdopterin-guanine dinucleotide biosynthesis protein MobA; molybdopterin-guanine dinucleotide biosynthesis protein a 1800575 10103789 Alide_1742 Alicycliphilus denitrificans BC molybdopterin-guanine dinucleotide biosynthesis protein a YP_004126382.1 1799943 R 596153 CDS YP_004126383.1 319762446 10103790 complement(1800579..1801748) 1 NC_014910.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; KEGG: dia:Dtpsy_1969 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein a 1801748 10103790 Alide_1743 Alicycliphilus denitrificans BC molybdenum cofactor biosynthesis protein a YP_004126383.1 1800579 R 596153 CDS YP_004126384.1 319762447 10103791 1801840..1802718 1 NC_014910.1 KEGG: ajs:Ajs_1750 hypothetical protein; hypothetical protein 1802718 10103791 Alide_1744 Alicycliphilus denitrificans BC hypothetical protein YP_004126384.1 1801840 D 596153 CDS YP_004126385.1 319762448 10103792 complement(1802777..1803334) 1 NC_014910.1 KEGG: ajs:Ajs_1755 hypothetical protein; hypothetical protein 1803334 10103792 Alide_1745 Alicycliphilus denitrificans BC hypothetical protein YP_004126385.1 1802777 R 596153 CDS YP_004126386.1 319762449 10103793 complement(1803344..1804777) 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: dia:Dtpsy_1966 aldehyde dehydrogenase; aldehyde dehydrogenase 1804777 10103793 Alide_1746 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004126386.1 1803344 R 596153 CDS YP_004126387.1 319762450 10103794 complement(1804942..1807023) 1 NC_014910.1 TIGRFAM: V-type H(+)-translocating pyrophosphatase; KEGG: dia:Dtpsy_1965 membrane-bound proton-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase; v-type h(+)-translocating pyrophosphatase 1807023 10103794 Alide_1747 Alicycliphilus denitrificans BC v-type h(+)-translocating pyrophosphatase YP_004126387.1 1804942 R 596153 CDS YP_004126388.1 319762451 10103795 1807238..1807771 1 NC_014910.1 KEGG: dia:Dtpsy_1964 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase; inorganic diphosphatase 1807771 10103795 Alide_1748 Alicycliphilus denitrificans BC inorganic diphosphatase YP_004126388.1 1807238 D 596153 CDS YP_004126389.1 319762452 10103796 1807973..1808479 1 NC_014910.1 KEGG: ajs:Ajs_1759 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; chemotaxis protein CheW 1808479 10103796 Alide_1749 Alicycliphilus denitrificans BC chemotaxis protein CheW YP_004126389.1 1807973 D 596153 CDS YP_004126390.1 319762453 10103797 1808492..1810249 1 NC_014910.1 KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 1810249 10103797 Alide_1750 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004126390.1 1808492 D 596153 CDS YP_004126391.1 319762454 10103798 complement(1810246..1811469) 1 NC_014910.1 PFAM: protein of unknown function DUF482; KEGG: vei:Veis_1736 hypothetical protein; hypothetical protein 1811469 10103798 Alide_1751 Alicycliphilus denitrificans BC hypothetical protein YP_004126391.1 1810246 R 596153 CDS YP_004126392.1 319762455 10103800 1811765..1813423 1 NC_014910.1 KEGG: vei:Veis_1737 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 1813423 10103800 Alide_1753 Alicycliphilus denitrificans BC NAD+ synthetase YP_004126392.1 1811765 D 596153 CDS YP_004126393.1 319762456 10103801 1813474..1813812 1 NC_014910.1 PFAM: nitrogen regulatory protein P-II; KEGG: dia:Dtpsy_1960 nitrogen regulatory protein P-II; nitrogen regulatory protein p-ii 1813812 10103801 Alide_1754 Alicycliphilus denitrificans BC nitrogen regulatory protein p-ii YP_004126393.1 1813474 D 596153 CDS YP_004126394.1 319762457 10103802 complement(1813822..1814415) 1 NC_014910.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: dia:Dtpsy_1959 hypothetical protein; hypothetical protein 1814415 10103802 Alide_1755 Alicycliphilus denitrificans BC hypothetical protein YP_004126394.1 1813822 R 596153 CDS YP_004126395.1 319762458 10103803 complement(1814408..1814806) 1 NC_014910.1 PFAM: diacylglycerol kinase; KEGG: dia:Dtpsy_1958 diacylglycerol kinase; diacylglycerol kinase 1814806 10103803 Alide_1756 Alicycliphilus denitrificans BC diacylglycerol kinase YP_004126395.1 1814408 R 596153 CDS YP_004126396.1 319762459 10103804 complement(1814869..1815441) 1 NC_014910.1 PFAM: RDD domain containing protein; KEGG: ajs:Ajs_1765 RDD domain-containing protein; rdd domain-containing protein 1815441 10103804 Alide_1757 Alicycliphilus denitrificans BC rdd domain-containing protein YP_004126396.1 1814869 R 596153 CDS YP_004126397.1 319762460 10103805 complement(1815469..1816293) 1 NC_014910.1 KEGG: ajs:Ajs_1766 transmembrane protein; transmembrane protein 1816293 10103805 Alide_1758 Alicycliphilus denitrificans BC transmembrane protein YP_004126397.1 1815469 R 596153 CDS YP_004126398.1 319762461 10103806 complement(1816317..1816778) 1 NC_014910.1 KEGG: dia:Dtpsy_1955 transmembrane protein; transmembrane protein 1816778 10103806 Alide_1759 Alicycliphilus denitrificans BC transmembrane protein YP_004126398.1 1816317 R 596153 CDS YP_004126399.1 319762462 10103807 complement(1816775..1817344) 1 NC_014910.1 KEGG: dia:Dtpsy_1954 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 family RNA polymerase sigma factor 1817344 10103807 Alide_1760 Alicycliphilus denitrificans BC sigma-70 family RNA polymerase sigma factor YP_004126399.1 1816775 R 596153 CDS YP_004126400.1 319762463 10103808 1817633..1819426 1 NC_014910.1 KEGG: ajs:Ajs_1769 acetolactate synthase 3 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; acetolactate synthase large subunit 1819426 10103808 Alide_1761 Alicycliphilus denitrificans BC acetolactate synthase large subunit YP_004126400.1 1817633 D 596153 CDS YP_004126401.1 319762464 10103809 1819614..1820105 1 NC_014910.1 KEGG: ctt:CtCNB1_1659 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; acetolactate synthase small subunit 1820105 10103809 Alide_1762 Alicycliphilus denitrificans BC acetolactate synthase small subunit YP_004126401.1 1819614 D 596153 CDS YP_004126402.1 319762465 10103810 1820174..1821190 1 NC_014910.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: dia:Dtpsy_1951 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase 1821190 10103810 Alide_1763 Alicycliphilus denitrificans BC ketol-acid reductoisomerase YP_004126402.1 1820174 D 596153 CDS YP_004126403.1 319762466 10103811 1821368..1822204 1 NC_014910.1 KEGG: vei:Veis_1753 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; cdp-diacylglycerol/serine o-phosphatidyltransferase 1822204 10103811 Alide_1764 Alicycliphilus denitrificans BC cdp-diacylglycerol/serine o-phosphatidyltransferase YP_004126403.1 1821368 D 596153 CDS YP_004126404.1 319762467 10103812 complement(1822229..1822897) 1 NC_014910.1 KEGG: tmz:Tmz1t_0854 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; maleylacetoacetate isomerase 1822897 10103812 Alide_1765 Alicycliphilus denitrificans BC maleylacetoacetate isomerase YP_004126404.1 1822229 R 596153 CDS YP_004126405.1 319762468 10103813 complement(1822908..1823921) 1 NC_014910.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: tmz:Tmz1t_0853 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (faa) hydrolase 1823921 10103813 Alide_1766 Alicycliphilus denitrificans BC fumarylacetoacetate (faa) hydrolase YP_004126405.1 1822908 R 596153 CDS YP_004126406.1 319762469 10103814 complement(1823997..1825370) 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: hse:Hsero_1116 4-hydroxybenzoate transporter transmembrane protein; major facilitator superfamily protein 1825370 10103814 Alide_1767 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004126406.1 1823997 R 596153 CDS YP_004126407.1 319762470 10103815 complement(1825399..1825953) 1 NC_014910.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3679 glyoxalase-family protein; glyoxalase/bleomycin resistance protein/dioxygenase 1825953 10103815 Alide_1768 Alicycliphilus denitrificans BC glyoxalase/bleomycin resistance protein/dioxygenase YP_004126407.1 1825399 R 596153 CDS YP_004126408.1 319762471 10103816 1826086..1826994 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_3346 LysR family transcriptional regulator; LysR family transcriptional regulator 1826994 10103816 Alide_1769 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126408.1 1826086 D 596153 CDS YP_004126409.1 319762472 10103817 1827202..1828869 1 NC_014910.1 TIGRFAM: 2-isopropylmalate synthase; KEGG: dia:Dtpsy_1949 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; 2-isopropylmalate synthase 1828869 10103817 Alide_1770 Alicycliphilus denitrificans BC 2-isopropylmalate synthase YP_004126409.1 1827202 D 596153 CDS YP_004126410.1 319762473 10103818 1828905..1830446 1 NC_014910.1 KEGG: ajs:Ajs_1774 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; 2-isopropylmalate synthase 1830446 10103818 Alide_1771 Alicycliphilus denitrificans BC 2-isopropylmalate synthase YP_004126410.1 1828905 D 596153 CDS YP_004126411.1 319762474 10103819 1830562..1831656 1 NC_014910.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ajs:Ajs_1775 murein-dd-endopeptidase; peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 1831656 10103819 Alide_1772 Alicycliphilus denitrificans BC peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 YP_004126411.1 1830562 D 596153 CDS YP_004126412.1 319762475 10103820 complement(1831694..1832506) 1 NC_014910.1 KEGG: dia:Dtpsy_1946 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; transcriptional regulator iclr 1832506 10103820 Alide_1773 Alicycliphilus denitrificans BC transcriptional regulator iclr YP_004126412.1 1831694 R 596153 CDS YP_004126413.1 319762476 10103821 complement(1832590..1834092) 1 NC_014910.1 KEGG: dac:Daci_5942 sodium/proline symporter; TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; sodium/proline symporter 1834092 10103821 Alide_1774 Alicycliphilus denitrificans BC sodium/proline symporter YP_004126413.1 1832590 R 596153 CDS YP_004126414.1 319762477 10103822 complement(1834295..1838290) 1 NC_014910.1 KEGG: dac:Daci_5941 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 1838290 10103822 Alide_1775 Alicycliphilus denitrificans BC delta-1-pyrroline-5-carboxylate dehydrogenase YP_004126414.1 1834295 R 596153 CDS YP_004126415.1 319762478 10103823 complement(1838436..1839677) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_1945 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 1839677 10103823 Alide_1776 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004126415.1 1838436 R 596153 CDS YP_004126416.1 319762479 10103824 complement(1839693..1840784) 1 NC_014910.1 PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_1778 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1840784 10103824 Alide_1777 Alicycliphilus denitrificans BC aminoglycoside phosphotransferase YP_004126416.1 1839693 R 596153 CDS YP_004126417.1 319762480 10103825 complement(1840841..1841560) 1 NC_014910.1 KEGG: ajs:Ajs_1779 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein 1841560 10103825 Alide_1778 Alicycliphilus denitrificans BC cyclic nucleotide-binding protein YP_004126417.1 1840841 R 596153 CDS YP_004126418.1 319762481 10103826 complement(1841750..1842529) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_1942 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 1842529 10103826 Alide_1779 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004126418.1 1841750 R 596153 CDS YP_004126419.1 319762482 10103827 complement(1842540..1844060) 1 NC_014910.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_1941 3-hydroxy-acyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 1844060 10103827 Alide_1780 Alicycliphilus denitrificans BC 3-hydroxyacyl-CoA dehydrogenase YP_004126419.1 1842540 R 596153 CDS YP_004126420.1 319762483 10103828 1844138..1846156 1 NC_014910.1 KEGG: dia:Dtpsy_1940 hypothetical protein; hypothetical protein 1846156 10103828 Alide_1781 Alicycliphilus denitrificans BC hypothetical protein YP_004126420.1 1844138 D 596153 CDS YP_004126421.1 319762484 10103829 complement(1846167..1847069) 1 NC_014910.1 KEGG: dia:Dtpsy_1939 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate diphosphorylase 1847069 10103829 Alide_1782 Alicycliphilus denitrificans BC thiamine-phosphate diphosphorylase YP_004126421.1 1846167 R 596153 CDS YP_004126422.1 319762485 10103830 complement(1847070..1847873) 1 NC_014910.1 PFAM: thiazole biosynthesis family protein; KEGG: dia:Dtpsy_1938 thiazole synthase; thiazole biosynthesis family protein 1847873 10103830 Alide_1783 Alicycliphilus denitrificans BC thiazole biosynthesis family protein YP_004126422.1 1847070 R 596153 CDS YP_004126423.1 319762486 10103831 complement(1847889..1848086) 1 NC_014910.1 KEGG: dia:Dtpsy_1937 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein this 1848086 10103831 Alide_1784 Alicycliphilus denitrificans BC thiamine biosynthesis protein this YP_004126423.1 1847889 R 596153 CDS YP_004126424.1 319762487 10103832 complement(1848083..1849201) 1 NC_014910.1 KEGG: dia:Dtpsy_1936 FAD dependent oxidoreductase; TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; glycine oxidase thio 1849201 10103832 Alide_1785 Alicycliphilus denitrificans BC glycine oxidase thio YP_004126424.1 1848083 R 596153 CDS YP_004126425.1 319762488 10103833 1849396..1850244 1 NC_014910.1 KEGG: ajs:Ajs_1787 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1850244 10103833 Alide_1786 Alicycliphilus denitrificans BC phosphomethylpyrimidine kinase YP_004126425.1 1849396 D 596153 CDS YP_004126426.1 319762489 10103834 complement(1850255..1850731) 1 NC_014910.1 KEGG: dia:Dtpsy_1934 SH3 type 3 domain protein; PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; sh3 type 3 domain-containing protein 1850731 10103834 Alide_1787 Alicycliphilus denitrificans BC sh3 type 3 domain-containing protein YP_004126426.1 1850255 R 596153 CDS YP_004126427.1 319762490 10103835 complement(1850818..1852089) 1 NC_014910.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: ctt:CtCNB1_2972 cytosine/purines/uracil permease; cytosine/purines uracil thiamine allantoin permease 1852089 10103835 Alide_1788 Alicycliphilus denitrificans BC cytosine/purines uracil thiamine allantoin permease YP_004126427.1 1850818 R 596153 CDS YP_004126428.1 319762491 10103836 complement(1852086..1853132) 1 NC_014910.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dia:Dtpsy_1933 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fad-dependent pyridine nucleotide-disulfide oxidoreductase 1853132 10103836 Alide_1789 Alicycliphilus denitrificans BC fad-dependent pyridine nucleotide-disulfide oxidoreductase YP_004126428.1 1852086 R 596153 CDS YP_004126429.1 319762492 10103837 complement(1853147..1853470) 1 NC_014910.1 KEGG: dia:Dtpsy_1932 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1853470 10103837 Alide_1790 Alicycliphilus denitrificans BC 4Fe-4S ferredoxin YP_004126429.1 1853147 R 596153 CDS YP_004126430.1 319762493 10103838 complement(1853598..1854965) 1 NC_014910.1 TIGRFAM: sulfate adenylyltransferase, large subunit; KEGG: dia:Dtpsy_1931 sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; sulfate adenylyltransferase, large subunit 1854965 10103838 Alide_1791 Alicycliphilus denitrificans BC sulfate adenylyltransferase, large subunit YP_004126430.1 1853598 R 596153 CDS YP_004126431.1 319762494 10103839 complement(1854965..1855921) 1 NC_014910.1 KEGG: aav:Aave_3055 sulfate adenylyltransferase subunit 2; PFAM: phosphoadenosine phosphosulfate reductase; sulfate adenylyltransferase 1855921 10103839 Alide_1792 Alicycliphilus denitrificans BC sulfate adenylyltransferase YP_004126431.1 1854965 R 596153 CDS YP_004126432.1 319762495 10103840 complement(1855987..1856610) 1 NC_014910.1 KEGG: ajs:Ajs_1793 phosphoadenylylsulfate reductase (thioredoxin); PFAM: phosphoadenosine phosphosulfate reductase; phosphoadenylyl-sulfate reductase (thioredoxin) 1856610 10103840 Alide_1793 Alicycliphilus denitrificans BC phosphoadenylyl-sulfate reductase (thioredoxin) YP_004126432.1 1855987 R 596153 CDS YP_004126433.1 319762496 10103841 complement(1856607..1857002) 1 NC_014910.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: dia:Dtpsy_1928 hypothetical protein; hypothetical protein 1857002 10103841 Alide_1794 Alicycliphilus denitrificans BC hypothetical protein YP_004126433.1 1856607 R 596153 CDS YP_004126434.1 319762497 10103842 complement(1857032..1858819) 1 NC_014910.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: dia:Dtpsy_1927 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulfite reductase 4Fe-4S subunit 1858819 10103842 Alide_1795 Alicycliphilus denitrificans BC nitrite and sulfite reductase 4Fe-4S subunit YP_004126434.1 1857032 R 596153 CDS YP_004126435.1 319762498 10103843 complement(1858846..1859649) 1 NC_014910.1 PFAM: protein of unknown function DUF81; KEGG: aav:Aave_3052 hypothetical protein; hypothetical protein 1859649 10103843 Alide_1796 Alicycliphilus denitrificans BC hypothetical protein YP_004126435.1 1858846 R 596153 CDS YP_004126436.1 319762499 10103844 complement(1859759..1861642) 1 NC_014910.1 KEGG: dac:Daci_4644 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; tRNA u-34 5-methylaminomethyl-2-thiouridine biosynthesis protein mnmc 1861642 10103844 Alide_1797 Alicycliphilus denitrificans BC tRNA u-34 5-methylaminomethyl-2-thiouridine biosynthesis protein mnmc YP_004126436.1 1859759 R 596153 CDS YP_004126437.1 319762500 10103845 complement(1861639..1862304) 1 NC_014910.1 PFAM: Uncharacterised protein family UPF0126; KEGG: dia:Dtpsy_1925 protein of unknown function UPF0126; hypothetical protein 1862304 10103845 Alide_1798 Alicycliphilus denitrificans BC hypothetical protein YP_004126437.1 1861639 R 596153 CDS YP_004126438.1 319762501 10103846 complement(1862376..1862648) 1 NC_014910.1 PFAM: Fe(II) trafficking protein YggX; KEGG: ctt:CtCNB1_3078 Fe(II) trafficking protein YggX; fe(ii) trafficking protein yggx 1862648 10103846 Alide_1799 Alicycliphilus denitrificans BC fe(ii) trafficking protein yggx YP_004126438.1 1862376 R 596153 CDS YP_004126439.1 319762502 10103847 1862773..1863792 1 NC_014910.1 KEGG: ajs:Ajs_1799 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; sulfate ABC transporter periplasmic sulfate-binding protein 1863792 10103847 Alide_1800 Alicycliphilus denitrificans BC sulfate ABC transporter periplasmic sulfate-binding protein YP_004126439.1 1862773 D 596153 CDS YP_004126440.1 319762503 10103848 1863858..1864178 1 NC_014910.1 KEGG: rfr:Rfer_1780 NADPH-dependent FMN reductase; hypothetical protein 1864178 10103848 Alide_1801 Alicycliphilus denitrificans BC hypothetical protein YP_004126440.1 1863858 D 596153 CDS YP_004126441.1 319762504 10103849 complement(1864175..1864870) 1 NC_014910.1 KEGG: rme:Rmet_3794 TetR family transcriptional regulator; tetr family transcriptional regulator 1864870 10103849 Alide_1802 Alicycliphilus denitrificans BC tetr family transcriptional regulator YP_004126441.1 1864175 R 596153 CDS YP_004126442.1 319762505 10103850 1864935..1865072 1 NC_014910.1 hypothetical protein 1865072 10103850 Alide_1803 Alicycliphilus denitrificans BC hypothetical protein YP_004126442.1 1864935 D 596153 CDS YP_004126443.1 319762506 10103851 1865089..1866654 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: azl:AZL_a10790 long-chain fatty-acid-CoA ligase; AMP-dependent synthetase/ligase 1866654 10103851 Alide_1804 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004126443.1 1865089 D 596153 CDS YP_004126444.1 319762507 10103852 1866710..1867897 1 NC_014910.1 KEGG: bxe:Bxe_B2740 lipid-transfer protein; PFAM: Thiolase-like; propanoyl-CoA c-acyltransferase 1867897 10103852 Alide_1805 Alicycliphilus denitrificans BC propanoyl-CoA c-acyltransferase YP_004126444.1 1866710 D 596153 CDS YP_004126445.1 319762508 10103853 1867909..1868718 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_4328 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 1868718 10103853 Alide_1806 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004126445.1 1867909 D 596153 CDS YP_004126446.1 319762509 10103854 1868756..1869952 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_C0498 branched chain amino acid ABC transporter periplasmic ligand-binding protein; ABC transporter substrate-binding protein 1869952 10103854 Alide_1807 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004126446.1 1868756 D 596153 CDS YP_004126447.1 319762510 10103855 1870021..1870878 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0499 branched chain amino acid ABC transporter inner membrane protein; inner-membrane translocator 1870878 10103855 Alide_1808 Alicycliphilus denitrificans BC inner-membrane translocator YP_004126447.1 1870021 D 596153 CDS YP_004126448.1 319762511 10103856 1870875..1871843 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0500 branched chain amino acid ABC transporter inner membrane protein; inner-membrane translocator 1871843 10103856 Alide_1809 Alicycliphilus denitrificans BC inner-membrane translocator YP_004126448.1 1870875 D 596153 CDS YP_004126449.1 319762512 10103857 1871840..1872592 1 NC_014910.1 KEGG: bxe:Bxe_C0501 branched chain amino acid ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1872592 10103857 Alide_1810 Alicycliphilus denitrificans BC ABC transporter YP_004126449.1 1871840 D 596153 CDS YP_004126450.1 319762513 10103858 1872589..1873296 1 NC_014910.1 KEGG: bxe:Bxe_C0502 branched chain amino acid ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1873296 10103858 Alide_1811 Alicycliphilus denitrificans BC ABC transporter YP_004126450.1 1872589 D 596153 CDS YP_004126451.1 319762514 10103859 1873340..1873933 1 NC_014910.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pat:Patl_3926 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 1873933 10103859 Alide_1812 Alicycliphilus denitrificans BC carboxymuconolactone decarboxylase YP_004126451.1 1873340 D 596153 CDS YP_004126452.1 319762515 10103860 1873970..1875571 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_1300 DitJ-like CoA ligase; AMP-dependent synthetase/ligase 1875571 10103860 Alide_1813 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004126452.1 1873970 D 596153 CDS YP_004126453.1 319762516 10103861 1875587..1876420 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1711 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 1876420 10103861 Alide_1814 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004126453.1 1875587 D 596153 CDS YP_004126454.1 319762517 10103866 complement(1880081..1881058) 1 NC_014910.1 PFAM: Lytic transglycosylase catalytic; Sel1 domain protein repeat-containing protein; KEGG: rfr:Rfer_0483 lytic transglycosylase, catalytic; lytic transglycosylase 1881058 10103866 Alide_1819 Alicycliphilus denitrificans BC lytic transglycosylase YP_004126454.1 1880081 R 596153 CDS YP_004126455.1 319762518 10103867 1881411..1882130 1 NC_014910.1 KEGG: ecc:c1165 P4 family integrase; p4 family integrase 1882130 10103867 Alide_1820 Alicycliphilus denitrificans BC p4 family integrase YP_004126455.1 1881411 D 596153 CDS YP_004126456.1 319762519 10103868 1882161..1882484 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1882484 10103868 Alide_1821 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004126456.1 1882161 D 596153 CDS YP_004126457.1 319762520 10103869 1882481..1883395 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 1883395 10103869 Alide_1822 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004126457.1 1882481 D 596153 CDS YP_004126458.1 319762521 10103870 1883501..1883893 1 NC_014910.1 KEGG: ajs:Ajs_2230 hypothetical protein; hypothetical protein 1883893 10103870 Alide_1823 Alicycliphilus denitrificans BC hypothetical protein YP_004126458.1 1883501 D 596153 CDS YP_004126459.1 319762522 10103871 1884144..1884860 1 NC_014910.1 KEGG: ajs:Ajs_2229 hypothetical protein; hypothetical protein 1884860 10103871 Alide_1824 Alicycliphilus denitrificans BC hypothetical protein YP_004126459.1 1884144 D 596153 CDS YP_004126460.1 319762523 10103872 1885152..1885949 1 NC_014910.1 KEGG: rpf:Rpic12D_0659 hypothetical protein; hypothetical protein 1885949 10103872 Alide_1825 Alicycliphilus denitrificans BC hypothetical protein YP_004126460.1 1885152 D 596153 CDS YP_004126461.1 319762524 10103873 complement(1886172..1887860) 1 NC_014910.1 KEGG: ajs:Ajs_1298 mercuric reductase; TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; mercuric reductase 1887860 10103873 Alide_1826 Alicycliphilus denitrificans BC mercuric reductase YP_004126461.1 1886172 R 596153 CDS YP_004126462.1 319762525 10103874 complement(1887871..1888149) 1 NC_014910.1 KEGG: ajs:Ajs_1299 mercuric transport protein periplasmic component; TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport periplasmic protein 1888149 10103874 Alide_1827 Alicycliphilus denitrificans BC mercuric transport periplasmic protein YP_004126462.1 1887871 R 596153 CDS YP_004126463.1 319762526 10103875 complement(1888160..1888510) 1 NC_014910.1 PFAM: Mercuric transport protein MerT; KEGG: ajs:Ajs_1300 mercuric transport protein; mercuric transport protein mert 1888510 10103875 Alide_1828 Alicycliphilus denitrificans BC mercuric transport protein mert YP_004126463.1 1888160 R 596153 CDS YP_004126464.1 319762527 10103876 1888582..1888989 1 NC_014910.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: ajs:Ajs_1301 MerR family transcriptional regulator; SMART: regulatory protein MerR; hg(ii)-responsive transcriptional regulator 1888989 10103876 Alide_1829 Alicycliphilus denitrificans BC hg(ii)-responsive transcriptional regulator YP_004126464.1 1888582 D 596153 CDS YP_004126465.1 319762528 10103877 1889304..1889855 1 NC_014910.1 KEGG: mpt:Mpe_A2362 hypothetical protein; hypothetical protein 1889855 10103877 Alide_1830 Alicycliphilus denitrificans BC hypothetical protein YP_004126465.1 1889304 D 596153 CDS YP_004126466.1 319762529 10103878 1889911..1890522 1 NC_014910.1 KEGG: mpt:Mpe_A2363 hypothetical protein; hypothetical protein 1890522 10103878 Alide_1831 Alicycliphilus denitrificans BC hypothetical protein YP_004126466.1 1889911 D 596153 CDS YP_004126467.1 319762530 10103879 1890612..1890977 1 NC_014910.1 KEGG: mpt:Mpe_A2364 hypothetical protein; hypothetical protein 1890977 10103879 Alide_1832 Alicycliphilus denitrificans BC hypothetical protein YP_004126467.1 1890612 D 596153 CDS YP_004126468.1 319762531 10103880 1891062..1891712 1 NC_014910.1 KEGG: tmz:Tmz1t_0975 hypothetical protein; hypothetical protein 1891712 10103880 Alide_1833 Alicycliphilus denitrificans BC hypothetical protein YP_004126468.1 1891062 D 596153 CDS YP_004126469.1 319762532 10103881 1891777..1892886 1 NC_014910.1 KEGG: tmz:Tmz1t_0974 hypothetical protein; hypothetical protein 1892886 10103881 Alide_1834 Alicycliphilus denitrificans BC hypothetical protein YP_004126469.1 1891777 D 596153 CDS YP_004126470.1 319762533 10103882 1892988..1893293 1 NC_014910.1 KEGG: mpt:Mpe_A2367 hypothetical protein; hypothetical protein 1893293 10103882 Alide_1835 Alicycliphilus denitrificans BC hypothetical protein YP_004126470.1 1892988 D 596153 CDS YP_004126471.1 319762534 10103883 1893393..1894577 1 NC_014910.1 KEGG: ajs:Ajs_2220 helicase domain-containing protein; helicase 1894577 10103883 Alide_1836 Alicycliphilus denitrificans BC helicase YP_004126471.1 1893393 D 596153 CDS YP_004126472.1 319762535 10103884 complement(1894569..1895483) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 1895483 10103884 Alide_1837 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004126472.1 1894569 R 596153 CDS YP_004126473.1 319762536 10103885 complement(1895480..1895803) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1895803 10103885 Alide_1838 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004126473.1 1895480 R 596153 CDS YP_004126474.1 319762537 10103887 complement(1896262..1898115) 1 NC_014910.1 PFAM: integrase family protein; KEGG: mpt:Mpe_A2408 integrase (int); integrase family protein 1898115 10103887 Alide_1840 Alicycliphilus denitrificans BC integrase family protein YP_004126474.1 1896262 R 596153 CDS YP_004126475.1 319762538 10103889 complement(1898544..1899086) 1 NC_014910.1 KEGG: ajs:Ajs_1664 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; rrf2 family transcriptional regulator 1899086 10103889 Alide_1841 Alicycliphilus denitrificans BC rrf2 family transcriptional regulator YP_004126475.1 1898544 R 596153 CDS YP_004126476.1 319762539 10103890 complement(1899248..1899631) 1 NC_014910.1 manually curated; KEGG: dia:Dtpsy_2039 hypothetical protein; hypothetical protein 1899631 10103890 Alide_1842 Alicycliphilus denitrificans BC hypothetical protein YP_004126476.1 1899248 R 596153 CDS YP_004126477.1 319762540 10103891 1899705..1899965 1 NC_014910.1 KEGG: dia:Dtpsy_2037 hypothetical protein; hypothetical protein 1899965 10103891 Alide_1843 Alicycliphilus denitrificans BC hypothetical protein YP_004126477.1 1899705 D 596153 CDS YP_004126478.1 319762541 10103892 complement(1899977..1900852) 1 NC_014910.1 KEGG: dia:Dtpsy_2036 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase 1900852 10103892 Alide_1844 Alicycliphilus denitrificans BC phosphatidylserine decarboxylase YP_004126478.1 1899977 R 596153 CDS YP_004126479.1 319762542 10103893 1901079..1902230 1 NC_014910.1 manually curated; PFAM: CBS domain containing protein; HPP family protein; KEGG: ajs:Ajs_1669 CBS domain-containing protein; SMART: CBS domain containing protein; CBS domain-containing protein 1902230 10103893 Alide_1845 Alicycliphilus denitrificans BC CBS domain-containing protein YP_004126479.1 1901079 D 596153 CDS YP_004126480.1 319762543 10103894 1902478..1902738 1 NC_014910.1 KEGG: dia:Dtpsy_2034 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor if-1 1902738 10103894 Alide_1846 Alicycliphilus denitrificans BC translation initiation factor if-1 YP_004126480.1 1902478 D 596153 CDS YP_004126481.1 319762544 10103896 1903109..1904158 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ajs:Ajs_4119 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1904158 10103896 Alide_1847 Alicycliphilus denitrificans BC diguanylate cyclase YP_004126481.1 1903109 D 596153 CDS YP_004126482.1 319762545 10103897 1904164..1904937 1 NC_014910.1 PFAM: protein of unknown function DUF1624; KEGG: ajs:Ajs_1672 hypothetical protein; hypothetical protein 1904937 10103897 Alide_1848 Alicycliphilus denitrificans BC hypothetical protein YP_004126482.1 1904164 D 596153 CDS YP_004126483.1 319762546 10103898 complement(1904949..1905251) 1 NC_014910.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: dia:Dtpsy_1390 integration host factor, beta subunit; SMART: histone family protein DNA-binding protein; integration host factor subunit beta 1905251 10103898 Alide_1849 Alicycliphilus denitrificans BC integration host factor subunit beta YP_004126483.1 1904949 R 596153 CDS YP_004126484.1 319762547 10103899 complement(1905372..1907057) 1 NC_014910.1 KEGG: dia:Dtpsy_1391 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; 30S ribosomal protein S1 1907057 10103899 Alide_1850 Alicycliphilus denitrificans BC 30S ribosomal protein S1 YP_004126484.1 1905372 R 596153 CDS YP_004126485.1 319762548 10103900 complement(1907238..1909262) 1 NC_014910.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; cytidylate kinase; KEGG: dia:Dtpsy_1392 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); cytidylate kinase region; 3-phosphoshikimate 1-carboxyvinyltransferase 1909262 10103900 Alide_1851 Alicycliphilus denitrificans BC 3-phosphoshikimate 1-carboxyvinyltransferase YP_004126485.1 1907238 R 596153 CDS YP_004126486.1 319762549 10103901 complement(1909262..1910146) 1 NC_014910.1 KEGG: dia:Dtpsy_1393 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; prephenate dehydrogenase 1910146 10103901 Alide_1852 Alicycliphilus denitrificans BC prephenate dehydrogenase YP_004126486.1 1909262 R 596153 CDS YP_004126487.1 319762550 10103902 complement(1910157..1911257) 1 NC_014910.1 KEGG: dia:Dtpsy_1394 chorismate mutase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; chorismate mutase 1911257 10103902 Alide_1853 Alicycliphilus denitrificans BC chorismate mutase YP_004126487.1 1910157 R 596153 CDS YP_004126488.1 319762551 10103903 complement(1911376..1912485) 1 NC_014910.1 TIGRFAM: phosphoserine aminotransferase; KEGG: dia:Dtpsy_1395 phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase 1912485 10103903 Alide_1854 Alicycliphilus denitrificans BC phosphoserine aminotransferase YP_004126488.1 1911376 R 596153 CDS YP_004126489.1 319762552 10103904 complement(1912552..1915242) 1 NC_014910.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: ajs:Ajs_2464 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase, a subunit 1915242 10103904 Alide_1855 Alicycliphilus denitrificans BC DNA gyrase, a subunit YP_004126489.1 1912552 R 596153 CDS YP_004126490.1 319762553 10103905 1915356..1916078 1 NC_014910.1 PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_1397 OmpA/MotB domain protein; ompa/motb domain-containing protein 1916078 10103905 Alide_1856 Alicycliphilus denitrificans BC ompa/motb domain-containing protein YP_004126490.1 1915356 D 596153 CDS YP_004126491.1 319762554 10103906 1916158..1916871 1 NC_014910.1 TIGRFAM: ubiquinone biosynthesis O-methyltransferase; KEGG: dia:Dtpsy_1398 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11; ubiquinone biosynthesis o-methyltransferase 1916871 10103906 Alide_1857 Alicycliphilus denitrificans BC ubiquinone biosynthesis o-methyltransferase YP_004126491.1 1916158 D 596153 CDS YP_004126492.1 319762555 10103907 1916868..1917545 1 NC_014910.1 KEGG: ajs:Ajs_2461 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 1917545 10103907 Alide_1858 Alicycliphilus denitrificans BC phosphoglycolate phosphatase YP_004126492.1 1916868 D 596153 CDS YP_004126493.1 319762556 10103909 complement(1918163..1918834) 1 NC_014910.1 PFAM: protein of unknown function DUF159; KEGG: tin:Tint_2914 protein of unknown function DUF159; hypothetical protein 1918834 10103909 Alide_1859 Alicycliphilus denitrificans BC hypothetical protein YP_004126493.1 1918163 R 596153 CDS YP_004126494.1 319762557 10103910 1918890..1919375 1 NC_014910.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: tin:Tint_2913 peptidase S24/S26A/S26B, conserved region; peptidase s24/s26a/s26b 1919375 10103910 Alide_1860 Alicycliphilus denitrificans BC peptidase s24/s26a/s26b YP_004126494.1 1918890 D 596153 CDS YP_004126495.1 319762558 10103911 1919375..1920661 1 NC_014910.1 KEGG: tin:Tint_2912 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 1920661 10103911 Alide_1861 Alicycliphilus denitrificans BC DNA-directed DNA polymerase YP_004126495.1 1919375 D 596153 CDS YP_004126496.1 319762559 10103912 complement(1920658..1921122) 1 NC_014910.1 KEGG: mca:MCA2632 hypothetical protein; hypothetical protein 1921122 10103912 Alide_1862 Alicycliphilus denitrificans BC hypothetical protein YP_004126496.1 1920658 R 596153 CDS YP_004126497.1 319762560 10103913 complement(1921119..1921505) 1 NC_014910.1 KEGG: mca:MCA2633 prophage LambdaMc01, site-specific recombinase resolvase family protein, truncation; prophage lambdamc01, site-specific recombinase resolvase family protein, truncation 1921505 10103913 Alide_1863 Alicycliphilus denitrificans BC prophage lambdamc01, site-specific recombinase resolvase family protein, truncation YP_004126497.1 1921119 R 596153 CDS YP_004126498.1 319762561 10103914 complement(1921502..1922881) 1 NC_014910.1 PFAM: Resolvase domain; Recombinase; KEGG: mca:MCA2634 prophage LambdaMc01, site-specific recombinase resolvase family protein; resolvase domain-containing protein 1922881 10103914 Alide_1864 Alicycliphilus denitrificans BC resolvase domain-containing protein YP_004126498.1 1921502 R 596153 CDS YP_004126499.1 319762562 10103915 complement(1922881..1923327) 1 NC_014910.1 KEGG: mca:MCA2635 hypothetical protein; hypothetical protein 1923327 10103915 Alide_1865 Alicycliphilus denitrificans BC hypothetical protein YP_004126499.1 1922881 R 596153 CDS YP_004126500.1 319762563 10103916 complement(1923324..1923518) 1 NC_014910.1 KEGG: mca:MCA2636 hypothetical protein; hypothetical protein 1923518 10103916 Alide_1866 Alicycliphilus denitrificans BC hypothetical protein YP_004126500.1 1923324 R 596153 CDS YP_004126501.1 319762564 10103917 1923698..1923976 1 NC_014910.1 KEGG: sml:Smlt1898 HTH transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1923976 10103917 Alide_1867 Alicycliphilus denitrificans BC helix-turn-helix domain-containing protein YP_004126501.1 1923698 D 596153 CDS YP_004126502.1 319762565 10103918 1923977..1924240 1 NC_014910.1 KEGG: nde:NIDE0076 hypothetical protein; hypothetical protein 1924240 10103918 Alide_1868 Alicycliphilus denitrificans BC hypothetical protein YP_004126502.1 1923977 D 596153 CDS YP_004126503.1 319762566 10103919 complement(1924725..1926704) 1 NC_014910.1 KEGG: ara:Arad_14159 hydantoin utilization protein B; PFAM: Hydantoinase B/oxoprolinase; 5-oxoprolinase 1926704 10103919 Alide_1869 Alicycliphilus denitrificans BC 5-oxoprolinase YP_004126503.1 1924725 R 596153 CDS YP_004126504.1 319762567 10103921 1927947..1928375 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase is3/is911 family protein 1928375 10103921 Alide_1871 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004126504.1 1927947 D 596153 CDS YP_004126505.1 319762568 10103922 1928372..1928704 1 NC_014910.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; is66 orf2 family protein 1928704 10103922 Alide_1872 Alicycliphilus denitrificans BC is66 orf2 family protein YP_004126505.1 1928372 D 596153 CDS YP_004126506.1 319762569 10103923 1928787..1930301 1 NC_014910.1 KEGG: dia:Dtpsy_2523 transposase IS66; transposase is66 1930301 10103923 Alide_1873 Alicycliphilus denitrificans BC transposase is66 YP_004126506.1 1928787 D 596153 CDS YP_004126507.1 319762570 10103924 complement(1931238..1932152) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 1932152 10103924 Alide_1874 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004126507.1 1931238 R 596153 CDS YP_004126508.1 319762571 10103925 complement(1932149..1932472) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 1932472 10103925 Alide_1875 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004126508.1 1932149 R 596153 CDS YP_004126509.1 319762572 10103927 complement(1932782..1933078) 1 NC_014910.1 manually curated; KEGG: pol:Bpro_4342 sarcosine oxidase alpha subunit; sarcosine oxidase subunit alpha 1933078 10103927 Alide_1877 Alicycliphilus denitrificans BC sarcosine oxidase subunit alpha YP_004126509.1 1932782 R 596153 CDS YP_004126510.1 319762573 10103928 complement(1933026..1934186) 1 NC_014910.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_4343 FAD dependent oxidoreductase; FAD-dependent oxidoreductase 1934186 10103928 Alide_1878 Alicycliphilus denitrificans BC FAD-dependent oxidoreductase YP_004126510.1 1933026 R 596153 CDS YP_004126511.1 319762574 10103929 1934534..1935460 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_4348 LysR family transcriptional regulator; LysR family transcriptional regulator 1935460 10103929 Alide_1879 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126511.1 1934534 D 596153 CDS YP_004126512.1 319762575 10103930 complement(1935751..1936677) 1 NC_014910.1 TIGRFAM: Glutaminase, core; KEGG: thermolabile glutaminase (glutaminase A); PFAM: Glutaminase, core; glutaminase, core 1936677 10103930 Alide_1880 Alicycliphilus denitrificans BC glutaminase, core YP_004126512.1 1935751 R 596153 CDS YP_004126513.1 319762576 10103931 complement(1936681..1937868) 1 NC_014910.1 TIGRFAM: amidohydrolase; KEGG: pol:Bpro_4523 peptidase M20D, amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1937868 10103931 Alide_1881 Alicycliphilus denitrificans BC amidohydrolase YP_004126513.1 1936681 R 596153 CDS YP_004126514.1 319762577 10103932 complement(1937906..1939246) 1 NC_014910.1 KEGG: rme:Rmet_5758 major facilitator protein family permease; major facilitator protein family permease 1939246 10103932 Alide_1882 Alicycliphilus denitrificans BC major facilitator protein family permease YP_004126514.1 1937906 R 596153 CDS YP_004126515.1 319762578 10103933 1939373..1940275 1 NC_014910.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_4525 LysR family transcriptional regulator; LysR family transcriptional regulator 1940275 10103933 Alide_1883 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126515.1 1939373 D 596153 CDS YP_004126516.1 319762579 10103934 complement(1940344..1941141) 1 NC_014910.1 KEGG: sde:Sde_2785 hypothetical protein; hypothetical protein 1941141 10103934 Alide_1884 Alicycliphilus denitrificans BC hypothetical protein YP_004126516.1 1940344 R 596153 CDS YP_004126517.1 319762580 10103935 complement(1941276..1941770) 1 NC_014910.1 manually curated; KEGG: afr:AFE_1417 acetyltransferase, GNAT family; GNAT family acetyltransferase 1941770 10103935 Alide_1885 Alicycliphilus denitrificans BC GNAT family acetyltransferase YP_004126517.1 1941276 R 596153 CDS YP_004126518.1 319762581 10103936 complement(1941767..1942033) 1 NC_014910.1 PFAM: protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein; hypothetical protein 1942033 10103936 Alide_1886 Alicycliphilus denitrificans BC hypothetical protein YP_004126518.1 1941767 R 596153 CDS YP_004126519.1 319762582 10103937 complement(1942264..1943520) 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1692 major facilitator superfamily transporter; major facilitator superfamily protein 1943520 10103937 Alide_1887 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004126519.1 1942264 R 596153 CDS YP_004126520.1 319762583 10103938 1943704..1944495 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2008 gluconate 5-dehydrogenase; short-chain dehydrogenase/reductase sdr 1944495 10103938 Alide_1888 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004126520.1 1943704 D 596153 CDS YP_004126521.1 319762584 10103939 1944559..1944984 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_1696 hypothetical protein; thioesterase superfamily protein 1944984 10103939 Alide_1889 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004126521.1 1944559 D 596153 CDS YP_004126522.1 319762585 10103940 1945078..1946094 1 NC_014910.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: ajs:Ajs_1697 alcohol dehydrogenase; alcohol dehydrogenase 1946094 10103940 Alide_1890 Alicycliphilus denitrificans BC alcohol dehydrogenase YP_004126522.1 1945078 D 596153 CDS YP_004126523.1 319762586 10103941 1946171..1947094 1 NC_014910.1 KEGG: ajs:Ajs_1699 glutathione S-transferase-related protein; glutathione s-transferase-like protein 1947094 10103941 Alide_1891 Alicycliphilus denitrificans BC glutathione s-transferase-like protein YP_004126523.1 1946171 D 596153 CDS YP_004126524.1 319762587 10103942 complement(1947174..1947767) 1 NC_014910.1 KEGG: dia:Dtpsy_2002 protein of unknown function DUF1566; hypothetical protein 1947767 10103942 Alide_1892 Alicycliphilus denitrificans BC hypothetical protein YP_004126524.1 1947174 R 596153 CDS YP_004126525.1 319762588 10103943 1948256..1949659 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_1703 major facilitator superfamily transporter; major facilitator superfamily protein 1949659 10103943 Alide_1893 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004126525.1 1948256 D 596153 CDS YP_004126526.1 319762589 10103944 1949659..1951134 1 NC_014910.1 KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; deoxyribodipyrimidine photo-lyase 1951134 10103944 Alide_1894 Alicycliphilus denitrificans BC deoxyribodipyrimidine photo-lyase YP_004126526.1 1949659 D 596153 CDS YP_004126527.1 319762590 10103945 complement(1951139..1951705) 1 NC_014910.1 KEGG: ajs:Ajs_1629 hypothetical protein; hypothetical protein 1951705 10103945 Alide_1895 Alicycliphilus denitrificans BC hypothetical protein YP_004126527.1 1951139 R 596153 CDS YP_004126528.1 319762591 10103946 complement(1951686..1954046) 1 NC_014910.1 TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: ajs:Ajs_1630 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 1954046 10103946 Alide_1896 Alicycliphilus denitrificans BC 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_004126528.1 1951686 R 596153 CDS YP_004126529.1 319762592 10103947 1954155..1955081 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_1631 LysR family transcriptional regulator; LysR family transcriptional regulator 1955081 10103947 Alide_1897 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126529.1 1954155 D 596153 CDS YP_004126530.1 319762593 10103948 1955197..1955364 1 NC_014910.1 KEGG: dac:Daci_3074 hypothetical protein; hypothetical protein 1955364 10103948 Alide_1898 Alicycliphilus denitrificans BC hypothetical protein YP_004126530.1 1955197 D 596153 CDS YP_004126531.1 319762594 10103950 complement(1957390..1957911) 1 NC_014910.1 KEGG: dac:Daci_0667 hypothetical protein; hypothetical protein 1957911 10103950 Alide_1900 Alicycliphilus denitrificans BC hypothetical protein YP_004126531.1 1957390 R 596153 CDS YP_004126532.1 319762595 10103951 complement(1958018..1958878) 1 NC_014910.1 PFAM: isocitrate lyase and phosphorylmutase; KEGG: dac:Daci_3579 PEP phosphonomutase; isocitrate lyase and phosphorylmutase 1958878 10103951 Alide_1901 Alicycliphilus denitrificans BC isocitrate lyase and phosphorylmutase YP_004126532.1 1958018 R 596153 CDS YP_004126533.1 319762596 10103952 complement(1959040..1960203) 1 NC_014910.1 KEGG: dac:Daci_3586 AcnD-accessory protein PrpF; TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; acnd-accessory protein prpf 1960203 10103952 Alide_1902 Alicycliphilus denitrificans BC acnd-accessory protein prpf YP_004126533.1 1959040 R 596153 CDS YP_004126534.1 319762597 10103953 complement(1960207..1962834) 1 NC_014910.1 KEGG: dia:Dtpsy_2080 aconitate hydratase; TIGRFAM: 2-methylisocitrate dehydratase, Fe/S-dependent; PFAM: aconitate hydratase domain-containing protein; 2-methylisocitrate dehydratase, fe/s-dependent 1962834 10103953 Alide_1903 Alicycliphilus denitrificans BC 2-methylisocitrate dehydratase, fe/s-dependent YP_004126534.1 1960207 R 596153 CDS YP_004126535.1 319762598 10103954 complement(1962854..1964014) 1 NC_014910.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: ajs:Ajs_1635 methylcitrate synthase; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 1964014 10103954 Alide_1904 Alicycliphilus denitrificans BC 2-methylcitrate synthase/citrate synthase II YP_004126535.1 1962854 R 596153 CDS YP_004126536.1 319762599 10103955 complement(1964011..1964406) 1 NC_014910.1 KEGG: dia:Dtpsy_2078 thioesterase superfamily protein; manually curated; PFAM: thioesterase superfamily protein; thioesterase superfamily protein 1964406 10103955 Alide_1905 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004126536.1 1964011 R 596153 CDS YP_004126537.1 319762600 10103956 1964509..1965969 1 NC_014910.1 KEGG: ajs:Ajs_1637 XRE family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; hypothetical protein 1965969 10103956 Alide_1906 Alicycliphilus denitrificans BC hypothetical protein YP_004126537.1 1964509 D 596153 CDS YP_004126538.1 319762601 10103957 complement(1966081..1966989) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B2225 transcription regulator, LysR family; LysR family transcriptional regulator 1966989 10103957 Alide_1907 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126538.1 1966081 R 596153 CDS YP_004126539.1 319762602 10103958 1967119..1967502 1 NC_014910.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B2224 metallothiol transferase; glyoxalase/bleomycin resistance protein/dioxygenase 1967502 10103958 Alide_1908 Alicycliphilus denitrificans BC glyoxalase/bleomycin resistance protein/dioxygenase YP_004126539.1 1967119 D 596153 CDS YP_004126540.1 319762603 10103959 1967552..1968619 1 NC_014910.1 KEGG: hse:Hsero_2301 hypothetical protein; hypothetical protein 1968619 10103959 Alide_1909 Alicycliphilus denitrificans BC hypothetical protein YP_004126540.1 1967552 D 596153 CDS YP_004126541.1 319762604 10103960 complement(1968626..1969072) 1 NC_014910.1 KEGG: ajs:Ajs_1639 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RNA-binding s4 domain-containing protein 1969072 10103960 Alide_1910 Alicycliphilus denitrificans BC RNA-binding s4 domain-containing protein YP_004126541.1 1968626 R 596153 CDS YP_004126542.1 319762605 10103961 complement(1969095..1970498) 1 NC_014910.1 KEGG: dia:Dtpsy_2074 histidine kinase; PFAM: Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; two-component sensor kinase domain-containing protein 1970498 10103961 Alide_1911 Alicycliphilus denitrificans BC two-component sensor kinase domain-containing protein YP_004126542.1 1969095 R 596153 CDS YP_004126543.1 319762606 10103962 complement(1970495..1971178) 1 NC_014910.1 KEGG: ajs:Ajs_1641 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 1971178 10103962 Alide_1912 Alicycliphilus denitrificans BC response regulator receiver YP_004126543.1 1970495 R 596153 CDS YP_004126544.1 319762607 10103963 1971321..1972280 1 NC_014910.1 KEGG: dia:Dtpsy_2072 hypothetical protein; hypothetical protein 1972280 10103963 Alide_1913 Alicycliphilus denitrificans BC hypothetical protein YP_004126544.1 1971321 D 596153 CDS YP_004126545.1 319762608 10103964 1972417..1972971 1 NC_014910.1 KEGG: dia:Dtpsy_2071 hypothetical protein; hypothetical protein 1972971 10103964 Alide_1914 Alicycliphilus denitrificans BC hypothetical protein YP_004126545.1 1972417 D 596153 CDS YP_004126546.1 319762609 10103965 1972971..1974500 1 NC_014910.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 hypothetical protein; hypothetical protein 1974500 10103965 Alide_1915 Alicycliphilus denitrificans BC hypothetical protein YP_004126546.1 1972971 D 596153 CDS YP_004126547.1 319762610 10103966 1974566..1976755 1 NC_014910.1 KEGG: dia:Dtpsy_2060 D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; PFAM: D-(-)-3-hydroxybutyrate oligomer hydrolase, putative; hydroxybutyrate-dimer hydrolase 1976755 10103966 Alide_1916 Alicycliphilus denitrificans BC hydroxybutyrate-dimer hydrolase YP_004126547.1 1974566 D 596153 CDS YP_004126548.1 319762611 10103967 complement(1977073..1977660) 1 NC_014910.1 KEGG: ctt:CtCNB1_3704 lipoprotein; lipoprotein 1977660 10103967 Alide_1917 Alicycliphilus denitrificans BC lipoprotein YP_004126548.1 1977073 R 596153 CDS YP_004126549.1 319762612 10103968 complement(1977845..1978012) 1 NC_014910.1 KEGG: dia:Dtpsy_2056 hypothetical protein; hypothetical protein 1978012 10103968 Alide_1918 Alicycliphilus denitrificans BC hypothetical protein YP_004126549.1 1977845 R 596153 CDS YP_004126550.1 319762613 10103969 complement(1978026..1979123) 1 NC_014910.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ajs:Ajs_1649 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 1979123 10103969 Alide_1919 Alicycliphilus denitrificans BC hypothetical protein YP_004126550.1 1978026 R 596153 CDS YP_004126551.1 319762614 10103970 complement(1979218..1980162) 1 NC_014910.1 KEGG: dia:Dtpsy_2054 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; rhodanese domain-containing protein 1980162 10103970 Alide_1920 Alicycliphilus denitrificans BC rhodanese domain-containing protein YP_004126551.1 1979218 R 596153 CDS YP_004126552.1 319762615 10103971 complement(1980277..1981272) 1 NC_014910.1 TIGRFAM: ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase; PFAM: ferrochelatase; ferrochelatase 1981272 10103971 Alide_1921 Alicycliphilus denitrificans BC ferrochelatase YP_004126552.1 1980277 R 596153 CDS YP_004126553.1 319762616 10103972 1981291..1982016 1 NC_014910.1 KEGG: dac:Daci_2563 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 1982016 10103972 Alide_1922 Alicycliphilus denitrificans BC HAD-superfamily hydrolase YP_004126553.1 1981291 D 596153 CDS YP_004126554.1 319762617 10103973 complement(1981988..1984744) 1 NC_014910.1 KEGG: dia:Dtpsy_2050 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; ATPase P 1984744 10103973 Alide_1923 Alicycliphilus denitrificans BC ATPase P YP_004126554.1 1981988 R 596153 CDS YP_004126555.1 319762618 10103974 complement(1984923..1985729) 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: ajs:Ajs_1655 alpha/beta hydrolase fold; alpha/beta hydrolase 1985729 10103974 Alide_1924 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004126555.1 1984923 R 596153 CDS YP_004126556.1 319762619 10103975 complement(1985729..1987030) 1 NC_014910.1 KEGG: ajs:Ajs_1656 O-acetylhomoserine aminocarboxypropyltransferase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; o-acetylhomoserine/o-acetylserine sulfhydrylase 1987030 10103975 Alide_1925 Alicycliphilus denitrificans BC o-acetylhomoserine/o-acetylserine sulfhydrylase YP_004126556.1 1985729 R 596153 CDS YP_004126557.1 319762620 10103976 1987146..1987601 1 NC_014910.1 KEGG: dia:Dtpsy_2047 CBS domain containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; CBS domain-containing protein 1987601 10103976 Alide_1926 Alicycliphilus denitrificans BC CBS domain-containing protein YP_004126557.1 1987146 D 596153 CDS YP_004126558.1 319762621 10103977 1987695..1988789 1 NC_014910.1 TIGRFAM: chorismate synthase; KEGG: dia:Dtpsy_2046 chorismate synthase; PFAM: chorismate synthase; chorismate synthase 1988789 10103977 Alide_1927 Alicycliphilus denitrificans BC chorismate synthase YP_004126558.1 1987695 D 596153 CDS YP_004126559.1 319762622 10103978 complement(1988851..1989300) 1 NC_014910.1 PFAM: ATP-cone domain protein; KEGG: dia:Dtpsy_2045 transcriptional regulator NrdR; ATP-cone domain-containing protein 1989300 10103978 Alide_1928 Alicycliphilus denitrificans BC ATP-cone domain-containing protein YP_004126559.1 1988851 R 596153 CDS YP_004126560.1 319762623 10103979 complement(1989326..1990570) 1 NC_014910.1 KEGG: dia:Dtpsy_2044 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; glycine hydroxymethyltransferase 1990570 10103979 Alide_1929 Alicycliphilus denitrificans BC glycine hydroxymethyltransferase YP_004126560.1 1989326 R 596153 CDS YP_004126561.1 319762624 10103980 complement(1990812..1991624) 1 NC_014910.1 PFAM: Lytic transglycosylase catalytic; KEGG: dia:Dtpsy_2043 lytic transglycosylase catalytic; lytic transglycosylase 1991624 10103980 Alide_1930 Alicycliphilus denitrificans BC lytic transglycosylase YP_004126561.1 1990812 R 596153 CDS YP_004126562.1 319762625 10103981 1992342..1996100 1 NC_014910.1 KEGG: ajs:Ajs_1662 hypothetical protein; hypothetical protein 1996100 10103981 Alide_1931 Alicycliphilus denitrificans BC hypothetical protein YP_004126562.1 1992342 D 596153 CDS YP_004126563.1 319762626 10103982 1996324..1998921 1 NC_014910.1 KEGG: dia:Dtpsy_2041 hypothetical protein; hypothetical protein 1998921 10103982 Alide_1932 Alicycliphilus denitrificans BC hypothetical protein YP_004126563.1 1996324 D 596153 CDS YP_004126564.1 319762627 10103985 1999399..2001690 1 NC_014910.1 SMART: Cold shock protein; manually curated; KEGG: dia:Dtpsy_1240 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; ribonuclease r 2001690 10103985 Alide_1933 Alicycliphilus denitrificans BC ribonuclease r YP_004126564.1 1999399 D 596153 CDS YP_004126565.1 319762628 10103986 2001713..2002468 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1241 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 2002468 10103986 Alide_1934 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004126565.1 2001713 D 596153 CDS YP_004126566.1 319762629 10103987 2002559..2003209 1 NC_014910.1 KEGG: aav:Aave_3388 cytochrome c553-like protein; cytochrome c553-like protein 2003209 10103987 Alide_1935 Alicycliphilus denitrificans BC cytochrome c553-like protein YP_004126566.1 2002559 D 596153 CDS YP_004126567.1 319762630 10103988 2003206..2004495 1 NC_014910.1 KEGG: aav:Aave_3387 cytochrome c, class I; PFAM: cytochrome c class I; gluconate 2-dehydrogenase (acceptor) 2004495 10103988 Alide_1936 Alicycliphilus denitrificans BC gluconate 2-dehydrogenase (acceptor) YP_004126567.1 2003206 D 596153 CDS YP_004126568.1 319762631 10103989 2004515..2004898 1 NC_014910.1 PFAM: Thioredoxin domain-containing protein; KEGG: dia:Dtpsy_1244 hypothetical protein; thioredoxin domain-containing protein 2004898 10103989 Alide_1937 Alicycliphilus denitrificans BC thioredoxin domain-containing protein YP_004126568.1 2004515 D 596153 CDS YP_004126569.1 319762632 10103990 2005099..2005689 1 NC_014910.1 PFAM: protein of unknown function DUF150; KEGG: dia:Dtpsy_1245 hypothetical protein; hypothetical protein 2005689 10103990 Alide_1938 Alicycliphilus denitrificans BC hypothetical protein YP_004126569.1 2005099 D 596153 CDS YP_004126570.1 319762633 10103991 2005758..2007242 1 NC_014910.1 TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein; KEGG: dia:Dtpsy_1246 NusA antitermination factor; SMART: KH domain protein; transcription termination factor nusa 2007242 10103991 Alide_1939 Alicycliphilus denitrificans BC transcription termination factor nusa YP_004126570.1 2005758 D 596153 CDS YP_004126571.1 319762634 10103992 2007267..2010098 1 NC_014910.1 KEGG: dia:Dtpsy_1247 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Initiation factor 2 associated domain protein ; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein; translation initiation factor if-2 2010098 10103992 Alide_1940 Alicycliphilus denitrificans BC translation initiation factor if-2 YP_004126571.1 2007267 D 596153 CDS YP_004126572.1 319762635 10103993 2010102..2010482 1 NC_014910.1 KEGG: aav:Aave_3382 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; ribosome-binding factor a 2010482 10103993 Alide_1941 Alicycliphilus denitrificans BC ribosome-binding factor a YP_004126572.1 2010102 D 596153 CDS YP_004126573.1 319762636 10103994 2010475..2011479 1 NC_014910.1 KEGG: ajs:Ajs_2559 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase b 2011479 10103994 Alide_1942 Alicycliphilus denitrificans BC tRNA pseudouridine synthase b YP_004126573.1 2010475 D 596153 CDS YP_004126574.1 319762637 10103995 2011476..2013305 1 NC_014910.1 KEGG: ajs:Ajs_2558 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein TypA 2013305 10103995 Alide_1943 Alicycliphilus denitrificans BC GTP-binding protein TypA YP_004126574.1 2011476 D 596153 CDS YP_004126575.1 319762638 10103996 complement(2013373..2014251) 1 NC_014910.1 KEGG: vap:Vapar_3272 hypothetical protein; hypothetical protein 2014251 10103996 Alide_1944 Alicycliphilus denitrificans BC hypothetical protein YP_004126575.1 2013373 R 596153 CDS YP_004126576.1 319762639 10103997 2014585..2015676 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_2556 3-hydroxyisobutyryl-CoA hydrolase; enoyl-CoA hydratase 2015676 10103997 Alide_1945 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004126576.1 2014585 D 596153 CDS YP_004126577.1 319762640 10103998 complement(2015627..2016469) 1 NC_014910.1 KEGG: ajs:Ajs_2555 transmembrane anti-sigma factor; transmembrane anti-sigma factor 2016469 10103998 Alide_1946 Alicycliphilus denitrificans BC transmembrane anti-sigma factor YP_004126577.1 2015627 R 596153 CDS YP_004126578.1 319762641 10103999 complement(2016494..2017018) 1 NC_014910.1 KEGG: dia:Dtpsy_1254 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 family RNA polymerase sigma factor 2017018 10103999 Alide_1947 Alicycliphilus denitrificans BC sigma-70 family RNA polymerase sigma factor YP_004126578.1 2016494 R 596153 CDS YP_004126579.1 319762642 10104000 complement(2017035..2017400) 1 NC_014910.1 KEGG: dia:Dtpsy_1255 secreted repeat of unknown function; secreted repeat protein 2017400 10104000 Alide_1948 Alicycliphilus denitrificans BC secreted repeat protein YP_004126579.1 2017035 R 596153 CDS YP_004126580.1 319762643 10104001 complement(2017500..2017973) 1 NC_014910.1 KEGG: dia:Dtpsy_1256 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; ssra-binding protein 2017973 10104001 Alide_1949 Alicycliphilus denitrificans BC ssra-binding protein YP_004126580.1 2017500 R 596153 CDS YP_004126581.1 319762644 10104002 2018120..2018560 1 NC_014910.1 PFAM: cyclase/dehydrase; KEGG: dia:Dtpsy_1257 cyclase/dehydrase; cyclase/dehydrase 2018560 10104002 Alide_1950 Alicycliphilus denitrificans BC cyclase/dehydrase YP_004126581.1 2018120 D 596153 CDS YP_004126582.1 319762645 10104003 2018570..2018896 1 NC_014910.1 PFAM: protein of unknown function UPF0125; KEGG: ajs:Ajs_2550 hypothetical protein; hypothetical protein 2018896 10104003 Alide_1951 Alicycliphilus denitrificans BC hypothetical protein YP_004126582.1 2018570 D 596153 CDS YP_004126583.1 319762646 10104004 complement(2018905..2019408) 1 NC_014910.1 KEGG: ajs:Ajs_2549 hypothetical protein; hypothetical protein 2019408 10104004 Alide_1952 Alicycliphilus denitrificans BC hypothetical protein YP_004126583.1 2018905 R 596153 CDS YP_004126584.1 319762647 10104005 2019502..2020977 1 NC_014910.1 SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: dia:Dtpsy_1260 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 2020977 10104005 Alide_1953 Alicycliphilus denitrificans BC inosine-5'-monophosphate dehydrogenase YP_004126584.1 2019502 D 596153 CDS YP_004126585.1 319762648 10104006 2021051..2022667 1 NC_014910.1 TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; KEGG: dac:Daci_3013 GMP synthase; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; gmp synthase, large subunit 2022667 10104006 Alide_1954 Alicycliphilus denitrificans BC gmp synthase, large subunit YP_004126585.1 2021051 D 596153 CDS YP_004126586.1 319762649 10104007 2022969..2023991 1 NC_014910.1 PFAM: integrase family protein; KEGG: bam:Bamb_2021 phage integrase family protein; integrase family protein 2023991 10104007 Alide_1955 Alicycliphilus denitrificans BC integrase family protein YP_004126586.1 2022969 D 596153 CDS YP_004126587.1 319762650 10104008 complement(2023960..2025255) 1 NC_014910.1 KEGG: dia:Dtpsy_2288 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase i 2025255 10104008 Alide_1956 Alicycliphilus denitrificans BC citrate synthase i YP_004126587.1 2023960 R 596153 CDS YP_004126588.1 319762651 10104009 complement(2025302..2025574) 1 NC_014910.1 PFAM: protein of unknown function DUF339; KEGG: ajs:Ajs_2797 hypothetical protein; hypothetical protein 2025574 10104009 Alide_1957 Alicycliphilus denitrificans BC hypothetical protein YP_004126588.1 2025302 R 596153 CDS YP_004126589.1 319762652 10104010 complement(2025595..2026299) 1 NC_014910.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: dac:Daci_2424 succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; succinate dehydrogenase and fumarate reductase iron-sulfur protein 2026299 10104010 Alide_1958 Alicycliphilus denitrificans BC succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004126589.1 2025595 R 596153 CDS YP_004126590.1 319762653 10104011 complement(2026328..2028133) 1 NC_014910.1 KEGG: dia:Dtpsy_2285 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; succinate dehydrogenase, flavoprotein subunit 2028133 10104011 Alide_1959 Alicycliphilus denitrificans BC succinate dehydrogenase, flavoprotein subunit YP_004126590.1 2026328 R 596153 CDS YP_004126591.1 319762654 10104012 complement(2028184..2028549) 1 NC_014910.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: aav:Aave_2203 succinate dehydrogenase subunit D; succinate dehydrogenase, hydrophobic membrane anchor protein 2028549 10104012 Alide_1960 Alicycliphilus denitrificans BC succinate dehydrogenase, hydrophobic membrane anchor protein YP_004126591.1 2028184 R 596153 CDS YP_004126592.1 319762655 10104013 complement(2028574..2029005) 1 NC_014910.1 KEGG: dia:Dtpsy_2283 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit 2029005 10104013 Alide_1961 Alicycliphilus denitrificans BC succinate dehydrogenase, cytochrome b556 subunit YP_004126592.1 2028574 R 596153 CDS YP_004126593.1 319762656 10104014 complement(2029156..2029947) 1 NC_014910.1 KEGG: dia:Dtpsy_2282 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; ubic transcription regulator-associated domain-containing protein 2029947 10104014 Alide_1962 Alicycliphilus denitrificans BC ubic transcription regulator-associated domain-containing protein YP_004126593.1 2029156 R 596153 CDS YP_004126594.1 319762657 10104015 2030130..2031116 1 NC_014910.1 KEGG: dia:Dtpsy_2281 malate dehydrogenase; TIGRFAM: malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; malate dehydrogenase 2031116 10104015 Alide_1963 Alicycliphilus denitrificans BC malate dehydrogenase YP_004126594.1 2030130 D 596153 CDS YP_004126595.1 319762658 10104016 2031129..2031920 1 NC_014910.1 KEGG: dac:Daci_2430 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 12; trans-aconitate 2-methyltransferase 2031920 10104016 Alide_1964 Alicycliphilus denitrificans BC trans-aconitate 2-methyltransferase YP_004126595.1 2031129 D 596153 CDS YP_004126596.1 319762659 10104017 2032128..2032772 1 NC_014910.1 KEGG: dia:Dtpsy_2278 hypothetical protein; hypothetical protein 2032772 10104017 Alide_1965 Alicycliphilus denitrificans BC hypothetical protein YP_004126596.1 2032128 D 596153 CDS YP_004126597.1 319762660 10104018 2032890..2035481 1 NC_014910.1 KEGG: ajs:Ajs_2787 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: aconitate hydratase 2; PFAM: Aconitase B; aconitate hydratase domain-containing protein; aconitate hydratase 2 2035481 10104018 Alide_1966 Alicycliphilus denitrificans BC aconitate hydratase 2 YP_004126597.1 2032890 D 596153 CDS YP_004126598.1 319762661 10104020 complement(2035701..2036594) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_3364 transcriptional regulator, LysR family; LysR family transcriptional regulator 2036594 10104020 Alide_1967 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126598.1 2035701 R 596153 CDS YP_004126599.1 319762662 10104021 2036701..2038407 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ctt:CtCNB1_3363 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase 2038407 10104021 Alide_1968 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004126599.1 2036701 D 596153 CDS YP_004126600.1 319762663 10104022 2038514..2039506 1 NC_014910.1 KEGG: ctt:CtCNB1_3361 AccB; hypothetical protein 2039506 10104022 Alide_1969 Alicycliphilus denitrificans BC hypothetical protein YP_004126600.1 2038514 D 596153 CDS YP_004126601.1 319762664 10104023 2039513..2040673 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ctt:CtCNB1_3358 L-carnitine dehydratase/bile acid-inducible; l-carnitine dehydratase/bile acid-inducible protein f 2040673 10104023 Alide_1970 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004126601.1 2039513 D 596153 CDS YP_004126602.1 319762665 10104024 complement(2040684..2042033) 1 NC_014910.1 KEGG: dac:Daci_2356 glutathione-disulfide reductase; TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; glutathione-disulfide reductase 2042033 10104024 Alide_1971 Alicycliphilus denitrificans BC glutathione-disulfide reductase YP_004126602.1 2040684 R 596153 CDS YP_004126603.1 319762666 10104025 2042201..2042668 1 NC_014910.1 PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: vei:Veis_4544 2Fe-2S iron-sulfur cluster binding domain-containing protein; (2fe-2S)-binding domain-containing protein 2042668 10104025 Alide_1972 Alicycliphilus denitrificans BC (2fe-2S)-binding domain-containing protein YP_004126603.1 2042201 D 596153 CDS YP_004126604.1 319762667 10104026 2042702..2045074 1 NC_014910.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: vap:Vapar_1594 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase 2045074 10104026 Alide_1973 Alicycliphilus denitrificans BC aldehyde oxidase YP_004126604.1 2042702 D 596153 CDS YP_004126605.1 319762668 10104027 2045088..2045879 1 NC_014910.1 KEGG: pol:Bpro_0576 molybdopterin dehydrogenase, FAD-binding; PFAM: molybdopterin dehydrogenase FAD-binding; carbon monoxide dehydrogenase 2045879 10104027 Alide_1974 Alicycliphilus denitrificans BC carbon monoxide dehydrogenase YP_004126605.1 2045088 D 596153 CDS YP_004126606.1 319762669 10104028 2046009..2046923 1 NC_014910.1 KEGG: dac:Daci_2251 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATPase AAA 2046923 10104028 Alide_1975 Alicycliphilus denitrificans BC ATPase AAA YP_004126606.1 2046009 D 596153 CDS YP_004126607.1 319762670 10104029 2046926..2048167 1 NC_014910.1 PFAM: VWA containing CoxE family protein; KEGG: vei:Veis_4536 VWA containing CoxE family protein; von Willebrand factor A 2048167 10104029 Alide_1976 Alicycliphilus denitrificans BC von Willebrand factor A YP_004126607.1 2046926 D 596153 CDS YP_004126608.1 319762671 10104030 2048181..2048732 1 NC_014910.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit g 2048732 10104030 Alide_1977 Alicycliphilus denitrificans BC carbon monoxide dehydrogenase subunit g YP_004126608.1 2048181 D 596153 CDS YP_004126609.1 319762672 10104031 2048742..2049782 1 NC_014910.1 PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_0572 hypothetical protein; hypothetical protein 2049782 10104031 Alide_1978 Alicycliphilus denitrificans BC hypothetical protein YP_004126609.1 2048742 D 596153 CDS YP_004126610.1 319762673 10104032 2049782..2050429 1 NC_014910.1 KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase; molybdenum cofactor cytidylyltransferase 2050429 10104032 Alide_1979 Alicycliphilus denitrificans BC molybdenum cofactor cytidylyltransferase YP_004126610.1 2049782 D 596153 CDS YP_004126611.1 319762674 10104033 complement(2050437..2051312) 1 NC_014910.1 KEGG: dia:Dtpsy_2274 hypothetical protein; hypothetical protein 2051312 10104033 Alide_1980 Alicycliphilus denitrificans BC hypothetical protein YP_004126611.1 2050437 R 596153 CDS YP_004126612.1 319762675 10104034 complement(2051415..2053439) 1 NC_014910.1 KEGG: gox:GOX2135 hypothetical protein; hypothetical protein 2053439 10104034 Alide_1981 Alicycliphilus denitrificans BC hypothetical protein YP_004126612.1 2051415 R 596153 CDS YP_004126613.1 319762676 10104035 complement(2053454..2054785) 1 NC_014910.1 PFAM: amine oxidase; KEGG: xal:XALc_2703 probable protoporphyrinogen oxidase protein; amine oxidase 2054785 10104035 Alide_1982 Alicycliphilus denitrificans BC amine oxidase YP_004126613.1 2053454 R 596153 CDS YP_004126614.1 319762677 10104036 complement(2054791..2055756) 1 NC_014910.1 manually curated; KEGG: reh:H16_A2892 hypothetical protein; hypothetical protein 2055756 10104036 Alide_1983 Alicycliphilus denitrificans BC hypothetical protein YP_004126614.1 2054791 R 596153 CDS YP_004126615.1 319762678 10104037 complement(2055753..2056766) 1 NC_014910.1 KEGG: cph:Cpha266_0350 glycosyl transferase family protein; manually curated; PFAM: glycosyl transferase family 2; family 2 glycosyl transferase 2056766 10104037 Alide_1984 Alicycliphilus denitrificans BC family 2 glycosyl transferase YP_004126615.1 2055753 R 596153 CDS YP_004126616.1 319762679 10104038 complement(2056865..2058238) 1 NC_014910.1 PFAM: peptidase U32; KEGG: dia:Dtpsy_2273 peptidase U32; peptidase u32 2058238 10104038 Alide_1985 Alicycliphilus denitrificans BC peptidase u32 YP_004126616.1 2056865 R 596153 CDS YP_004126617.1 319762680 10104039 complement(2058287..2059657) 1 NC_014910.1 KEGG: dac:Daci_1894 hypothetical protein; hypothetical protein 2059657 10104039 Alide_1986 Alicycliphilus denitrificans BC hypothetical protein YP_004126617.1 2058287 R 596153 CDS YP_004126618.1 319762681 10104040 complement(2059685..2060566) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2444 LysR family transcriptional regulator; LysR family transcriptional regulator 2060566 10104040 Alide_1987 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126618.1 2059685 R 596153 CDS YP_004126619.1 319762682 10104041 2060710..2061423 1 NC_014910.1 PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_2443 hypothetical protein; hypothetical protein 2061423 10104041 Alide_1988 Alicycliphilus denitrificans BC hypothetical protein YP_004126619.1 2060710 D 596153 CDS YP_004126620.1 319762683 10104042 complement(2061443..2061976) 1 NC_014910.1 KEGG: dia:Dtpsy_2271 two component transcriptional regulator, fis family; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; response regulator receiver 2061976 10104042 Alide_1989 Alicycliphilus denitrificans BC response regulator receiver YP_004126620.1 2061443 R 596153 CDS YP_004126621.1 319762684 10104043 complement(2061977..2063293) 1 NC_014910.1 KEGG: ajs:Ajs_2780 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 2063293 10104043 Alide_1990 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004126621.1 2061977 R 596153 CDS YP_004126622.1 319762685 10104044 complement(2063290..2064099) 1 NC_014910.1 PFAM: Surfeit locus 1 family protein; KEGG: ajs:Ajs_2779 surfeit locus 1 family protein; surfeit locus 1 family protein 2064099 10104044 Alide_1991 Alicycliphilus denitrificans BC surfeit locus 1 family protein YP_004126622.1 2063290 R 596153 CDS YP_004126623.1 319762686 10104045 complement(2064096..2064470) 1 NC_014910.1 KEGG: ajs:Ajs_2778 cytochrome c oxidase subunit IV; TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; cytochrome o ubiquinol oxidase subunit iv 2064470 10104045 Alide_1992 Alicycliphilus denitrificans BC cytochrome o ubiquinol oxidase subunit iv YP_004126623.1 2064096 R 596153 CDS YP_004126624.1 319762687 10104046 complement(2064471..2065103) 1 NC_014910.1 KEGG: dia:Dtpsy_2267 cytochrome o ubiquinol oxidase, subunit III; TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; cytochrome o ubiquinol oxidase, subunit iii 2065103 10104046 Alide_1993 Alicycliphilus denitrificans BC cytochrome o ubiquinol oxidase, subunit iii YP_004126624.1 2064471 R 596153 CDS YP_004126625.1 319762688 10104047 complement(2065096..2067102) 1 NC_014910.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; KEGG: ajs:Ajs_2776 cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase, subunit i 2067102 10104047 Alide_1994 Alicycliphilus denitrificans BC cytochrome o ubiquinol oxidase, subunit i YP_004126625.1 2065096 R 596153 CDS YP_004126626.1 319762689 10104048 complement(2067127..2068116) 1 NC_014910.1 KEGG: ajs:Ajs_2775 ubiquinol oxidase, subunit II; TIGRFAM: ubiquinol oxidase, subunit II; PFAM: COX aromatic rich domain protein; cytochrome c oxidase subunit II; ubiquinol oxidase, subunit ii 2068116 10104048 Alide_1995 Alicycliphilus denitrificans BC ubiquinol oxidase, subunit ii YP_004126626.1 2067127 R 596153 CDS YP_004126627.1 319762690 10104049 2068418..2069749 1 NC_014910.1 KEGG: ajs:Ajs_2774 general substrate transporter; general substrate transporter 2069749 10104049 Alide_1996 Alicycliphilus denitrificans BC general substrate transporter YP_004126627.1 2068418 D 596153 CDS YP_004126628.1 319762691 10104050 complement(2069858..2070820) 1 NC_014910.1 KEGG: dia:Dtpsy_2263 protein TolA; TIGRFAM: protein TolA; TonB family protein; PFAM: Tol-Pal system TolA; protein tola 2070820 10104050 Alide_1997 Alicycliphilus denitrificans BC protein tola YP_004126628.1 2069858 R 596153 CDS YP_004126629.1 319762692 10104051 complement(2070842..2071267) 1 NC_014910.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2772 biopolymer transport protein ExbD/TolR; biopolymer transport protein exbd/tolr 2071267 10104051 Alide_1998 Alicycliphilus denitrificans BC biopolymer transport protein exbd/tolr YP_004126629.1 2070842 R 596153 CDS YP_004126630.1 319762693 10104052 complement(2071281..2071982) 1 NC_014910.1 KEGG: dia:Dtpsy_2261 protein TolQ; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein tolq 2071982 10104052 Alide_1999 Alicycliphilus denitrificans BC protein tolq YP_004126630.1 2071281 R 596153 CDS YP_004126631.1 319762694 10104053 complement(2071979..2072401) 1 NC_014910.1 KEGG: dia:Dtpsy_2260 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; tol-pal system-associated acyl-CoA thioesterase 2072401 10104053 Alide_2000 Alicycliphilus denitrificans BC tol-pal system-associated acyl-CoA thioesterase YP_004126631.1 2071979 R 596153 CDS YP_004126632.1 319762695 10104054 complement(2072404..2073588) 1 NC_014910.1 PFAM: aminotransferase class I and II; KEGG: dia:Dtpsy_2259 aminotransferase; aminotransferase class i and ii 2073588 10104054 Alide_2001 Alicycliphilus denitrificans BC aminotransferase class i and ii YP_004126632.1 2072404 R 596153 CDS YP_004126633.1 319762696 10104055 complement(2073660..2074205) 1 NC_014910.1 KEGG: dia:Dtpsy_2258 NusB antitermination factor; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; transcription antitermination factor nusb 2074205 10104055 Alide_2002 Alicycliphilus denitrificans BC transcription antitermination factor nusb YP_004126633.1 2073660 R 596153 CDS YP_004126634.1 319762697 10104056 complement(2074202..2074666) 1 NC_014910.1 KEGG: ajs:Ajs_2767 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 2074666 10104056 Alide_2003 Alicycliphilus denitrificans BC 6,7-dimethyl-8-ribityllumazine synthase YP_004126634.1 2074202 R 596153 CDS YP_004126635.1 319762698 10104057 complement(2074670..2075791) 1 NC_014910.1 KEGG: dia:Dtpsy_2256 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2075791 10104057 Alide_2004 Alicycliphilus denitrificans BC 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_004126635.1 2074670 R 596153 CDS YP_004126636.1 319762699 10104058 complement(2075929..2076216) 1 NC_014910.1 PFAM: ferredoxin; KEGG: dia:Dtpsy_2255 ferredoxin; ferredoxin 2076216 10104058 Alide_2005 Alicycliphilus denitrificans BC ferredoxin YP_004126636.1 2075929 R 596153 CDS YP_004126637.1 319762700 10104059 complement(2076574..2077455) 1 NC_014910.1 PFAM: NUDIX hydrolase; KEGG: pna:Pnap_2699 NUDIX hydrolase; nudix hydrolase 2077455 10104059 Alide_2006 Alicycliphilus denitrificans BC nudix hydrolase YP_004126637.1 2076574 R 596153 CDS YP_004126638.1 319762701 10104060 2077586..2078494 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 2078494 10104060 Alide_2007 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004126638.1 2077586 D 596153 CDS YP_004126639.1 319762702 10104061 2078602..2080131 1 NC_014910.1 TIGRFAM: glutamate/cysteine ligase; KEGG: dia:Dtpsy_1339 glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase; glutamate/cysteine ligase 2080131 10104061 Alide_2008 Alicycliphilus denitrificans BC glutamate/cysteine ligase YP_004126639.1 2078602 D 596153 CDS YP_004126640.1 319762703 10104062 2080177..2082360 1 NC_014910.1 KEGG: vap:Vapar_3567 protein of unknown function DUF893 YccS/YhfK; hypothetical protein 2082360 10104062 Alide_2009 Alicycliphilus denitrificans BC hypothetical protein YP_004126640.1 2080177 D 596153 CDS YP_004126641.1 319762704 10104063 complement(2082357..2082569) 1 NC_014910.1 KEGG: aav:Aave_2269 hypothetical protein; hypothetical protein 2082569 10104063 Alide_2010 Alicycliphilus denitrificans BC hypothetical protein YP_004126641.1 2082357 R 596153 CDS YP_004126642.1 319762705 10104064 complement(2082667..2083032) 1 NC_014910.1 PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_4413 endoribonuclease L-PSP; endoribonuclease L-PSP 2083032 10104064 Alide_2011 Alicycliphilus denitrificans BC endoribonuclease L-PSP YP_004126642.1 2082667 R 596153 CDS YP_004126643.1 319762706 10104065 complement(2083067..2084455) 1 NC_014910.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_4414 BFD-like (2Fe-2S)-binding region; hypothetical protein 2084455 10104065 Alide_2012 Alicycliphilus denitrificans BC hypothetical protein YP_004126643.1 2083067 R 596153 CDS YP_004126644.1 319762707 10104066 complement(2084457..2084801) 1 NC_014910.1 KEGG: pol:Bpro_4415 hypothetical protein; hypothetical protein 2084801 10104066 Alide_2013 Alicycliphilus denitrificans BC hypothetical protein YP_004126644.1 2084457 R 596153 CDS YP_004126645.1 319762708 10104067 complement(2084791..2085927) 1 NC_014910.1 KEGG: pol:Bpro_4416 FAD dependent oxidoreductase; manually curated; PFAM: FAD dependent oxidoreductase; FAD-dependent oxidoreductase 2085927 10104067 Alide_2014 Alicycliphilus denitrificans BC FAD-dependent oxidoreductase YP_004126645.1 2084791 R 596153 CDS YP_004126646.1 319762709 10104068 complement(2085972..2086955) 1 NC_014910.1 KEGG: dac:Daci_0779 hypothetical protein; hypothetical protein 2086955 10104068 Alide_2015 Alicycliphilus denitrificans BC hypothetical protein YP_004126646.1 2085972 R 596153 CDS YP_004126647.1 319762710 10104069 complement(2087030..2087953) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_4347 LysR family transcriptional regulator; LysR family transcriptional regulator 2087953 10104069 Alide_2016 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126647.1 2087030 R 596153 CDS YP_004126648.1 319762711 10104070 2088126..2089085 1 NC_014910.1 KEGG: ajs:Ajs_2510 GTP-binding protein, HSR1-related; TIGRFAM: ribosome biogenesis GTP-binding protein YlqF; PFAM: GTP-binding protein HSR1-related; ribosome biogenesis gtp-binding protein ylqf 2089085 10104070 Alide_2017 Alicycliphilus denitrificans BC ribosome biogenesis gtp-binding protein ylqf YP_004126648.1 2088126 D 596153 CDS YP_004126649.1 319762712 10104071 complement(2089167..2090996) 1 NC_014910.1 KEGG: dia:Dtpsy_1352 hypothetical protein; hypothetical protein 2090996 10104071 Alide_2018 Alicycliphilus denitrificans BC hypothetical protein YP_004126649.1 2089167 R 596153 CDS YP_004126650.1 319762713 10104072 complement(2091043..2091891) 1 NC_014910.1 KEGG: dia:Dtpsy_1355 pseudouridine synthase; manually curated; PFAM: pseudouridine synthase; pseudouridine synthase 2091891 10104072 Alide_2019 Alicycliphilus denitrificans BC pseudouridine synthase YP_004126650.1 2091043 R 596153 CDS YP_004126651.1 319762714 10104073 complement(2091810..2092103) 1 NC_014910.1 KEGG: dia:Dtpsy_1356 hypothetical protein; hypothetical protein 2092103 10104073 Alide_2020 Alicycliphilus denitrificans BC hypothetical protein YP_004126651.1 2091810 R 596153 CDS YP_004126652.1 319762715 10104074 2092206..2093132 1 NC_014910.1 PFAM: phosphoesterase DHHA1; KEGG: ajs:Ajs_2502 phosphoesterase, DHHA1; phosphoesterase dhha1 2093132 10104074 Alide_2021 Alicycliphilus denitrificans BC phosphoesterase dhha1 YP_004126652.1 2092206 D 596153 CDS YP_004126653.1 319762716 10104075 complement(2093183..2094418) 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2285 major facilitator superfamily transporter; major facilitator superfamily protein 2094418 10104075 Alide_2022 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004126653.1 2093183 R 596153 CDS YP_004126654.1 319762717 10104076 complement(2094460..2094885) 1 NC_014910.1 KEGG: ajs:Ajs_2501 nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); nuclease (snase domain-containing protein) 2094885 10104076 Alide_2023 Alicycliphilus denitrificans BC nuclease (snase domain-containing protein) YP_004126654.1 2094460 R 596153 CDS YP_004126655.1 319762718 10104077 2094984..2095859 1 NC_014910.1 TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: dia:Dtpsy_1360 RarD protein, DMT superfamily transporter; rard protein, dmt superfamily transporter 2095859 10104077 Alide_2024 Alicycliphilus denitrificans BC rard protein, dmt superfamily transporter YP_004126655.1 2094984 D 596153 CDS YP_004126656.1 319762719 10104078 complement(2095893..2096459) 1 NC_014910.1 PFAM: pseudouridine synthase; KEGG: dia:Dtpsy_1363 pseudouridine synthase; pseudouridine synthase 2096459 10104078 Alide_2025 Alicycliphilus denitrificans BC pseudouridine synthase YP_004126656.1 2095893 R 596153 CDS YP_004126657.1 319762720 10104079 complement(2096456..2097286) 1 NC_014910.1 PFAM: Peptidase M23; KEGG: ajs:Ajs_2496 peptidase M23B; peptidase m23 2097286 10104079 Alide_2026 Alicycliphilus denitrificans BC peptidase m23 YP_004126657.1 2096456 R 596153 CDS YP_004126658.1 319762721 10104080 2097559..2098962 1 NC_014910.1 PFAM: fumarate lyase; Fumarase C-like; KEGG: dia:Dtpsy_1365 fumarate lyase; fumarate lyase 2098962 10104080 Alide_2027 Alicycliphilus denitrificans BC fumarate lyase YP_004126658.1 2097559 D 596153 CDS YP_004126659.1 319762722 10104081 complement(2099035..2099841) 1 NC_014910.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: dac:Daci_2483 protein of unknown function DUF306 MetA and HslJ; hypothetical protein 2099841 10104081 Alide_2028 Alicycliphilus denitrificans BC hypothetical protein YP_004126659.1 2099035 R 596153 CDS YP_004126660.1 319762723 10104082 complement(2099907..2100446) 1 NC_014910.1 PFAM: protein of unknown function DUF924; KEGG: dia:Dtpsy_3311 protein of unknown function DUF924; hypothetical protein 2100446 10104082 Alide_2029 Alicycliphilus denitrificans BC hypothetical protein YP_004126660.1 2099907 R 596153 CDS YP_004126661.1 319762724 10104083 complement(2100464..2102275) 1 NC_014910.1 KEGG: ajs:Ajs_1608 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; glutaminyl-tRNA synthetase 2102275 10104083 Alide_2030 Alicycliphilus denitrificans BC glutaminyl-tRNA synthetase YP_004126661.1 2100464 R 596153 CDS YP_004126662.1 319762725 10104084 2102415..2102753 1 NC_014910.1 KEGG: dia:Dtpsy_2105 hypothetical protein; hypothetical protein 2102753 10104084 Alide_2031 Alicycliphilus denitrificans BC hypothetical protein YP_004126662.1 2102415 D 596153 CDS YP_004126663.1 319762726 10104085 2102862..2103311 1 NC_014910.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: ajs:Ajs_1610 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II; 3-dehydroquinate dehydratase 2103311 10104085 Alide_2032 Alicycliphilus denitrificans BC 3-dehydroquinate dehydratase YP_004126663.1 2102862 D 596153 CDS YP_004126664.1 319762727 10104086 2103305..2104198 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_2103 alpha/beta hydrolase fold protein; alpha/beta hydrolase 2104198 10104086 Alide_2033 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004126664.1 2103305 D 596153 CDS YP_004126665.1 319762728 10104087 2104195..2104620 1 NC_014910.1 PFAM: Class I peptide chain release factor; KEGG: dia:Dtpsy_2102 class I peptide chain release factor; class i peptide chain release factor 2104620 10104087 Alide_2034 Alicycliphilus denitrificans BC class i peptide chain release factor YP_004126665.1 2104195 D 596153 CDS YP_004126666.1 319762729 10104088 2104722..2105558 1 NC_014910.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B; extradiol ring-cleavage dioxygenase class III protein subunit B 2105558 10104088 Alide_2035 Alicycliphilus denitrificans BC extradiol ring-cleavage dioxygenase class III protein subunit B YP_004126666.1 2104722 D 596153 CDS YP_004126667.1 319762730 10104089 2105555..2106250 1 NC_014910.1 PFAM: phospholipase/Carboxylesterase; KEGG: vei:Veis_2297 phospholipase/carboxylesterase; phospholipase/carboxylesterase 2106250 10104089 Alide_2036 Alicycliphilus denitrificans BC phospholipase/carboxylesterase YP_004126667.1 2105555 D 596153 CDS YP_004126668.1 319762731 10104090 2106431..2107309 1 NC_014910.1 KEGG: ajs:Ajs_1615 hypothetical protein; hypothetical protein 2107309 10104090 Alide_2037 Alicycliphilus denitrificans BC hypothetical protein YP_004126668.1 2106431 D 596153 CDS YP_004126669.1 319762732 10104091 complement(2107328..2107798) 1 NC_014910.1 KEGG: ajs:Ajs_1616 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein 2107798 10104091 Alide_2038 Alicycliphilus denitrificans BC transcription regulator asnc-type-like protein YP_004126669.1 2107328 R 596153 CDS YP_004126670.1 319762733 10104092 2107902..2110529 1 NC_014910.1 KEGG: ajs:Ajs_1617 2-oxoacid dehydrogenase subunit E1; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; alpha-ketoglutarate dehydrogenase; PFAM: Transketolase domain-containing protein; Transketolase central region; 2-oxo-acid dehydrogenase E1 2110529 10104092 Alide_2039 Alicycliphilus denitrificans BC 2-oxo-acid dehydrogenase E1 YP_004126670.1 2107902 D 596153 CDS YP_004126671.1 319762734 10104093 complement(2110546..2111832) 1 NC_014910.1 PFAM: Amidase; KEGG: bpt:Bpet0082 amidase; amidase 2111832 10104093 Alide_2040 Alicycliphilus denitrificans BC amidase YP_004126671.1 2110546 R 596153 CDS YP_004126672.1 319762735 10104094 complement(2111841..2112704) 1 NC_014910.1 manually curated; KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein 2112704 10104094 Alide_2041 Alicycliphilus denitrificans BC hypothetical protein YP_004126672.1 2111841 R 596153 CDS YP_004126673.1 319762736 10104095 complement(2112728..2113132) 1 NC_014910.1 PFAM: Mor transcription activator domain protein; KEGG: bbr:BB3657 phage-related DNA-binding protein; mor transcription activator domain-containing protein 2113132 10104095 Alide_2042 Alicycliphilus denitrificans BC mor transcription activator domain-containing protein YP_004126673.1 2112728 R 596153 CDS YP_004126674.1 319762737 10104096 complement(2113122..2113802) 1 NC_014910.1 KEGG: cvi:CV_2164 hypothetical protein; hypothetical protein 2113802 10104096 Alide_2043 Alicycliphilus denitrificans BC hypothetical protein YP_004126674.1 2113122 R 596153 CDS YP_004126675.1 319762738 10104097 complement(2113870..2114142) 1 NC_014910.1 KEGG: aav:Aave_1666 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 2114142 10104097 Alide_2044 Alicycliphilus denitrificans BC histone family protein DNA-binding protein YP_004126675.1 2113870 R 596153 CDS YP_004126676.1 319762739 10104098 complement(2114317..2114556) 1 NC_014910.1 KEGG: aav:Aave_4127 hypothetical protein; hypothetical protein 2114556 10104098 Alide_2045 Alicycliphilus denitrificans BC hypothetical protein YP_004126676.1 2114317 R 596153 CDS YP_004126677.1 319762740 10104099 complement(2114553..2114777) 1 NC_014910.1 KEGG: pol:Bpro_3763 hypothetical protein; hypothetical protein 2114777 10104099 Alide_2046 Alicycliphilus denitrificans BC hypothetical protein YP_004126677.1 2114553 R 596153 CDS YP_004126678.1 319762741 10104100 complement(2114774..2115160) 1 NC_014910.1 KEGG: pna:Pnap_3330 hypothetical protein; hypothetical protein 2115160 10104100 Alide_2047 Alicycliphilus denitrificans BC hypothetical protein YP_004126678.1 2114774 R 596153 CDS YP_004126679.1 319762742 10104101 complement(2115160..2115414) 1 NC_014910.1 KEGG: gla:GL50803_88750 hypothetical protein; hypothetical protein 2115414 10104101 Alide_2048 Alicycliphilus denitrificans BC hypothetical protein YP_004126679.1 2115160 R 596153 CDS YP_004126680.1 319762743 10104102 complement(2115402..2115560) 1 NC_014910.1 hypothetical protein 2115560 10104102 Alide_2049 Alicycliphilus denitrificans BC hypothetical protein YP_004126680.1 2115402 R 596153 CDS YP_004126681.1 319762744 10104103 complement(2115560..2116108) 1 NC_014910.1 KEGG: pol:Bpro_3759 hypothetical protein; hypothetical protein 2116108 10104103 Alide_2050 Alicycliphilus denitrificans BC hypothetical protein YP_004126681.1 2115560 R 596153 CDS YP_004126682.1 319762745 10104104 complement(2116121..2116405) 1 NC_014910.1 KEGG: bqu:BQ10670 hypothetical protein; hypothetical protein 2116405 10104104 Alide_2051 Alicycliphilus denitrificans BC hypothetical protein YP_004126682.1 2116121 R 596153 CDS YP_004126683.1 319762746 10104105 complement(2116402..2117022) 1 NC_014910.1 KEGG: lch:Lcho_2277 hypothetical protein; hypothetical protein 2117022 10104105 Alide_2052 Alicycliphilus denitrificans BC hypothetical protein YP_004126683.1 2116402 R 596153 CDS YP_004126684.1 319762747 10104106 complement(2117022..2117261) 1 NC_014910.1 KEGG: glo:Glov_0377 hypothetical protein; hypothetical protein 2117261 10104106 Alide_2053 Alicycliphilus denitrificans BC hypothetical protein YP_004126684.1 2117022 R 596153 CDS YP_004126685.1 319762748 10104107 complement(2117261..2117413) 1 NC_014910.1 hypothetical protein 2117413 10104107 Alide_2054 Alicycliphilus denitrificans BC hypothetical protein YP_004126685.1 2117261 R 596153 CDS YP_004126686.1 319762749 10104108 complement(2117416..2118708) 1 NC_014910.1 KEGG: sgl:SG0822 hypothetical protein; hypothetical protein 2118708 10104108 Alide_2055 Alicycliphilus denitrificans BC hypothetical protein YP_004126686.1 2117416 R 596153 CDS YP_004126687.1 319762750 10104109 complement(2118668..2120488) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: cvi:CV_2156 hypothetical protein; integrase catalytic region protein 2120488 10104109 Alide_2056 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004126687.1 2118668 R 596153 CDS YP_004126688.1 319762751 10104110 complement(2120475..2121539) 1 NC_014910.1 KEGG: cvi:CV_2155 hypothetical protein; hypothetical protein 2121539 10104110 Alide_2057 Alicycliphilus denitrificans BC hypothetical protein YP_004126688.1 2120475 R 596153 CDS YP_004126689.1 319762752 10104111 complement(2121566..2121874) 1 NC_014910.1 PFAM: regulatory protein IclR; KEGG: mfa:Mfla_2714 hypothetical protein; regulatory protein iclr 2121874 10104111 Alide_2058 Alicycliphilus denitrificans BC regulatory protein iclr YP_004126689.1 2121566 R 596153 CDS YP_004126690.1 319762753 10104112 complement(2121871..2122155) 1 NC_014910.1 KEGG: bps:BPSL1153 hypothetical protein; hypothetical protein 2122155 10104112 Alide_2059 Alicycliphilus denitrificans BC hypothetical protein YP_004126690.1 2121871 R 596153 CDS YP_004126691.1 319762754 10104113 complement(2122158..2122628) 1 NC_014910.1 KEGG: bbr:BB3644 hypothetical protein; hypothetical protein 2122628 10104113 Alide_2060 Alicycliphilus denitrificans BC hypothetical protein YP_004126691.1 2122158 R 596153 CDS YP_004126692.1 319762755 10104114 2122733..2123170 1 NC_014910.1 KEGG: bbt:BBta_4603 polysaccharide deacetylase; hypothetical protein 2123170 10104114 Alide_2061 Alicycliphilus denitrificans BC hypothetical protein YP_004126692.1 2122733 D 596153 CDS YP_004126693.1 319762756 10104115 complement(2123106..2123417) 1 NC_014910.1 KEGG: gau:GAU_1846 hypothetical protein; hypothetical protein 2123417 10104115 Alide_2062 Alicycliphilus denitrificans BC hypothetical protein YP_004126693.1 2123106 R 596153 CDS YP_004126694.1 319762757 10104116 complement(2123414..2123713) 1 NC_014910.1 KEGG: bbr:BB3643 hypothetical protein; hypothetical protein 2123713 10104116 Alide_2063 Alicycliphilus denitrificans BC hypothetical protein YP_004126694.1 2123414 R 596153 CDS YP_004126695.1 319762758 10104117 complement(2123745..2123942) 1 NC_014910.1 KEGG: bcj:BCAL1594 hypothetical protein; hypothetical protein 2123942 10104117 Alide_2064 Alicycliphilus denitrificans BC hypothetical protein YP_004126695.1 2123745 R 596153 CDS YP_004126696.1 319762759 10104118 2124038..2124544 1 NC_014910.1 PFAM: CI repressor; KEGG: hsm:HSM_0646 hypothetical protein; ci repressor 2124544 10104118 Alide_2065 Alicycliphilus denitrificans BC ci repressor YP_004126696.1 2124038 D 596153 CDS YP_004126697.1 319762760 10104119 2124572..2125153 1 NC_014910.1 KEGG: nvi:100122395 similar to n6-adenosine-methyltransferase ime4; hypothetical protein 2125153 10104119 Alide_2066 Alicycliphilus denitrificans BC hypothetical protein YP_004126697.1 2124572 D 596153 CDS YP_004126698.1 319762761 10104120 2125201..2125716 1 NC_014910.1 KEGG: sml:Smlt0146 TPR repeat protein; hypothetical protein 2125716 10104120 Alide_2067 Alicycliphilus denitrificans BC hypothetical protein YP_004126698.1 2125201 D 596153 CDS YP_004126699.1 319762762 10104121 2125913..2126272 1 NC_014910.1 KEGG: rsc:RCFBP_11706 phage-related membrane protein; membrane protein 2126272 10104121 Alide_2068 Alicycliphilus denitrificans BC membrane protein YP_004126699.1 2125913 D 596153 CDS YP_004126700.1 319762763 10104122 2126275..2126922 1 NC_014910.1 PFAM: Lytic transglycosylase catalytic; KEGG: dvm:DvMF_0723 lytic transglycosylase catalytic; lytic transglycosylase 2126922 10104122 Alide_2069 Alicycliphilus denitrificans BC lytic transglycosylase YP_004126700.1 2126275 D 596153 CDS YP_004126701.1 319762764 10104123 2126919..2127131 1 NC_014910.1 KEGG: bcb:BCB4264_A3495 hypothetical protein; hypothetical protein 2127131 10104123 Alide_2070 Alicycliphilus denitrificans BC hypothetical protein YP_004126701.1 2126919 D 596153 CDS YP_004126702.1 319762765 10104124 2127178..2127711 1 NC_014910.1 KEGG: ctt:CtCNB1_3551 hypothetical protein; hypothetical protein 2127711 10104124 Alide_2071 Alicycliphilus denitrificans BC hypothetical protein YP_004126702.1 2127178 D 596153 CDS YP_004126703.1 319762766 10104125 2127704..2127961 1 NC_014910.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: pol:Bpro_3778 TraR/DksA family transcriptional regulator; phage/conjugal plasmid c-4 type zinc finger protein, trar family 2127961 10104125 Alide_2072 Alicycliphilus denitrificans BC phage/conjugal plasmid c-4 type zinc finger protein, trar family YP_004126703.1 2127704 D 596153 CDS YP_004126704.1 319762767 10104126 2127961..2128263 1 NC_014910.1 KEGG: bbr:BB3635 hypothetical protein; hypothetical protein 2128263 10104126 Alide_2073 Alicycliphilus denitrificans BC hypothetical protein YP_004126704.1 2127961 D 596153 CDS YP_004126705.1 319762768 10104127 2128260..2128553 1 NC_014910.1 KEGG: bbr:BB3634 hypothetical protein; hypothetical protein 2128553 10104127 Alide_2074 Alicycliphilus denitrificans BC hypothetical protein YP_004126705.1 2128260 D 596153 CDS YP_004126706.1 319762769 10104128 2128557..2129099 1 NC_014910.1 KEGG: bbr:BB3633 hypothetical protein; hypothetical protein 2129099 10104128 Alide_2075 Alicycliphilus denitrificans BC hypothetical protein YP_004126706.1 2128557 D 596153 CDS YP_004126707.1 319762770 10104129 2129096..2129239 1 NC_014910.1 KEGG: pap:PSPA7_2455 formate/nitrate transporter; formate/nitrate transporter 2129239 10104129 Alide_2076 Alicycliphilus denitrificans BC formate/nitrate transporter YP_004126707.1 2129096 D 596153 CDS YP_004126708.1 319762771 10104130 2129236..2130600 1 NC_014910.1 KEGG: mca:MCA2933 prophage MuMc02, terminase, ATPase subunit, putative; prophage mumc02, terminase, atpase subunit, putative 2130600 10104130 Alide_2077 Alicycliphilus denitrificans BC prophage mumc02, terminase, atpase subunit, putative YP_004126708.1 2129236 D 596153 CDS YP_004126709.1 319762772 10104131 2130607..2132196 1 NC_014910.1 PFAM: protein of unknown function DUF935; KEGG: slt:Slit_0224 protein of unknown function DUF935; hypothetical protein 2132196 10104131 Alide_2078 Alicycliphilus denitrificans BC hypothetical protein YP_004126709.1 2130607 D 596153 CDS YP_004126710.1 319762773 10104132 2132306..2133544 1 NC_014910.1 PFAM: head morphogenesis protein SPP1 gp7; KEGG: hdu:HD1557 bacteriophage Mu GP30-like protein; head morphogenesis protein spp1 gp7 2133544 10104132 Alide_2079 Alicycliphilus denitrificans BC head morphogenesis protein spp1 gp7 YP_004126710.1 2132306 D 596153 CDS YP_004126711.1 319762774 10104133 2133664..2134227 1 NC_014910.1 TIGRFAM: phage virion morphogenesis protein; KEGG: hdu:HD1558 bacteriophage Mu G-like protein; phage virion morphogenesis protein 2134227 10104133 Alide_2080 Alicycliphilus denitrificans BC phage virion morphogenesis protein YP_004126711.1 2133664 D 596153 CDS YP_004126712.1 319762775 10104134 2134276..2135439 1 NC_014910.1 PFAM: Mu-like prophage I protein; KEGG: pag:PLES_15791 protease (I) and scaffold (Z) proteins; mu-like prophage i protein 2135439 10104134 Alide_2081 Alicycliphilus denitrificans BC mu-like prophage i protein YP_004126712.1 2134276 D 596153 CDS YP_004126713.1 319762776 10104135 2135463..2135873 1 NC_014910.1 KEGG: mag:amb1767 hypothetical protein; hypothetical protein 2135873 10104135 Alide_2082 Alicycliphilus denitrificans BC hypothetical protein YP_004126713.1 2135463 D 596153 CDS YP_004126714.1 319762777 10104136 2135901..2136794 1 NC_014910.1 KEGG: mag:amb1768 Mu-like prophage major head subunit gpT; mu-like prophage major head subunit gpt 2136794 10104136 Alide_2083 Alicycliphilus denitrificans BC mu-like prophage major head subunit gpt YP_004126714.1 2135901 D 596153 CDS YP_004126715.1 319762778 10104137 2136819..2137121 1 NC_014910.1 KEGG: mag:amb1769 hypothetical protein; hypothetical protein 2137121 10104137 Alide_2084 Alicycliphilus denitrificans BC hypothetical protein YP_004126715.1 2136819 D 596153 CDS YP_004126716.1 319762779 10104138 2137202..2137738 1 NC_014910.1 PFAM: protein of unknown function DUF1320; KEGG: hdu:HD1562 hypothetical protein; hypothetical protein 2137738 10104138 Alide_2085 Alicycliphilus denitrificans BC hypothetical protein YP_004126716.1 2137202 D 596153 CDS YP_004126717.1 319762780 10104139 2137745..2138179 1 NC_014910.1 KEGG: hma:rrnAC2056 D-3-phosphoglycerate dehydrogenase; hypothetical protein 2138179 10104139 Alide_2086 Alicycliphilus denitrificans BC hypothetical protein YP_004126717.1 2137745 D 596153 CDS YP_004126718.1 319762781 10104140 2138176..2138400 1 NC_014910.1 KEGG: fre:Franean1_4038 inner-membrane translocator; inner-membrane translocator 2138400 10104140 Alide_2087 Alicycliphilus denitrificans BC inner-membrane translocator YP_004126718.1 2138176 D 596153 CDS YP_004126719.1 319762782 10104141 2138397..2139359 1 NC_014910.1 KEGG: dac:Daci_1328 hypothetical protein; hypothetical protein 2139359 10104141 Alide_2088 Alicycliphilus denitrificans BC hypothetical protein YP_004126719.1 2138397 D 596153 CDS YP_004126720.1 319762783 10104142 2139404..2139895 1 NC_014910.1 KEGG: sco:SCO4763 hypothetical protein; hypothetical protein 2139895 10104142 Alide_2089 Alicycliphilus denitrificans BC hypothetical protein YP_004126720.1 2139404 D 596153 CDS YP_004126721.1 319762784 10104143 2139958..2140269 1 NC_014910.1 PFAM: protein of unknown function DUF1799 phage-related; KEGG: mfa:Mfla_2690 hypothetical protein; hypothetical protein 2140269 10104143 Alide_2090 Alicycliphilus denitrificans BC hypothetical protein YP_004126721.1 2139958 D 596153 CDS YP_004126722.1 319762785 10104144 2140292..2145208 1 NC_014910.1 PFAM: Prophage tail length tape measure; KEGG: pop:POPTR_595161 hypothetical protein; prophage tail length tape measure 2145208 10104144 Alide_2091 Alicycliphilus denitrificans BC prophage tail length tape measure YP_004126722.1 2140292 D 596153 CDS YP_004126723.1 319762786 10104145 2145205..2146119 1 NC_014910.1 KEGG: aav:Aave_1783 carbohydrate-binding family V/XII protein; carbohydrate-binding family v/xii protein 2146119 10104145 Alide_2092 Alicycliphilus denitrificans BC carbohydrate-binding family v/xii protein YP_004126723.1 2145205 D 596153 CDS YP_004126724.1 319762787 10104146 2146217..2146789 1 NC_014910.1 KEGG: dac:Daci_1333 hypothetical protein; hypothetical protein 2146789 10104146 Alide_2093 Alicycliphilus denitrificans BC hypothetical protein YP_004126724.1 2146217 D 596153 CDS YP_004126725.1 319762788 10104147 2146806..2147261 1 NC_014910.1 KEGG: wsu:WS1759 flagellar hook protein FlgE; hypothetical protein 2147261 10104147 Alide_2094 Alicycliphilus denitrificans BC hypothetical protein YP_004126725.1 2146806 D 596153 CDS YP_004126726.1 319762789 10104148 2147261..2147740 1 NC_014910.1 KEGG: dac:Daci_2627 hypothetical protein; hypothetical protein 2147740 10104148 Alide_2095 Alicycliphilus denitrificans BC hypothetical protein YP_004126726.1 2147261 D 596153 CDS YP_004126727.1 319762790 10104149 2147737..2148072 1 NC_014910.1 KEGG: scl:sce7319 hypothetical protein; hypothetical protein 2148072 10104149 Alide_2096 Alicycliphilus denitrificans BC hypothetical protein YP_004126727.1 2147737 D 596153 CDS YP_004126728.1 319762791 10104150 2148069..2148320 1 NC_014910.1 KEGG: rru:Rru_A2371 hydroxyacylglutathione hydrolase; hypothetical protein 2148320 10104150 Alide_2097 Alicycliphilus denitrificans BC hypothetical protein YP_004126728.1 2148069 D 596153 CDS YP_004126729.1 319762792 10104151 2148334..2148867 1 NC_014910.1 KEGG: rsl:RPSI07_0238 hypothetical protein; hypothetical protein 2148867 10104151 Alide_2098 Alicycliphilus denitrificans BC hypothetical protein YP_004126729.1 2148334 D 596153 CDS YP_004126730.1 319762793 10104152 2148871..2149548 1 NC_014910.1 KEGG: sil:SPO2726 hypothetical protein; hypothetical protein 2149548 10104152 Alide_2099 Alicycliphilus denitrificans BC hypothetical protein YP_004126730.1 2148871 D 596153 CDS YP_004126731.1 319762794 10104154 complement(2149688..2150776) 1 NC_014910.1 KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein; transposase is4 family protein 2150776 10104154 Alide_2101 Alicycliphilus denitrificans BC transposase is4 family protein YP_004126731.1 2149688 R 596153 CDS YP_004126732.1 319762795 10104156 2151028..2151564 1 NC_014910.1 KEGG: mno:Mnod_2441 hypothetical protein; hypothetical protein 2151564 10104156 Alide_2103 Alicycliphilus denitrificans BC hypothetical protein YP_004126732.1 2151028 D 596153 CDS YP_004126733.1 319762796 10104157 complement(2151672..2151911) 1 NC_014910.1 KEGG: vap:Vapar_5547 hypothetical protein; hypothetical protein 2151911 10104157 Alide_2104 Alicycliphilus denitrificans BC hypothetical protein YP_004126733.1 2151672 R 596153 CDS YP_004126734.1 319762797 10104158 2152022..2152939 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: hmg:100212933 similar to lysR transcriptional regulator; LysR family transcriptional regulator 2152939 10104158 Alide_2105 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126734.1 2152022 D 596153 CDS YP_004126735.1 319762798 10104159 2152974..2153753 1 NC_014910.1 KEGG: vap:Vapar_5148 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2153753 10104159 Alide_2106 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004126735.1 2152974 D 596153 CDS YP_004126736.1 319762799 10104160 2153906..2155228 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: vap:Vapar_5147 major facilitator superfamily MFS_1; major facilitator superfamily protein 2155228 10104160 Alide_2107 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004126736.1 2153906 D 596153 CDS YP_004126737.1 319762800 10104161 2155240..2156130 1 NC_014910.1 KEGG: vap:Vapar_5146 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 2156130 10104161 Alide_2108 Alicycliphilus denitrificans BC 3-hydroxyisobutyrate dehydrogenase YP_004126737.1 2155240 D 596153 CDS YP_004126738.1 319762801 10104162 2156201..2157214 1 NC_014910.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_5145 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2157214 10104162 Alide_2109 Alicycliphilus denitrificans BC NAD-dependent epimerase/dehydratase YP_004126738.1 2156201 D 596153 CDS YP_004126739.1 319762802 10104163 2157218..2158480 1 NC_014910.1 PFAM: type III effector Hrp-dependent outers; KEGG: vap:Vapar_5144 type III effector Hrp-dependent outers; type III effector hrp-dependent domain-containing protein 2158480 10104163 Alide_2110 Alicycliphilus denitrificans BC type III effector hrp-dependent domain-containing protein YP_004126739.1 2157218 D 596153 CDS YP_004126740.1 319762803 10104164 2158477..2159142 1 NC_014910.1 PFAM: class II aldolase/adducin family protein; KEGG: vap:Vapar_5143 aldolase; class ii aldolase/adducin family protein 2159142 10104164 Alide_2111 Alicycliphilus denitrificans BC class ii aldolase/adducin family protein YP_004126740.1 2158477 D 596153 CDS YP_004126741.1 319762804 10104165 2159152..2159961 1 NC_014910.1 KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; hydroxypyruvate isomerase 2159961 10104165 Alide_2112 Alicycliphilus denitrificans BC hydroxypyruvate isomerase YP_004126741.1 2159152 D 596153 CDS YP_004126742.1 319762805 10104166 complement(2160003..2160836) 1 NC_014910.1 PFAM: protein of unknown function DUF980; KEGG: ajs:Ajs_1618 hypothetical protein; hypothetical protein 2160836 10104166 Alide_2113 Alicycliphilus denitrificans BC hypothetical protein YP_004126742.1 2160003 R 596153 CDS YP_004126743.1 319762806 10104167 complement(2160841..2161623) 1 NC_014910.1 PFAM: metallophosphoesterase; KEGG: dia:Dtpsy_2095 UDP-2,3-diacylglucosamine hydrolase; metallophosphoesterase 2161623 10104167 Alide_2114 Alicycliphilus denitrificans BC metallophosphoesterase YP_004126743.1 2160841 R 596153 CDS YP_004126744.1 319762807 10104168 complement(2161628..2162155) 1 NC_014910.1 KEGG: dia:Dtpsy_2094 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; peptidyl-prolyl isomerase 2162155 10104168 Alide_2115 Alicycliphilus denitrificans BC peptidyl-prolyl isomerase YP_004126744.1 2161628 R 596153 CDS YP_004126745.1 319762808 10104169 complement(2162177..2162764) 1 NC_014910.1 KEGG: dia:Dtpsy_2093 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; peptidyl-prolyl isomerase 2162764 10104169 Alide_2116 Alicycliphilus denitrificans BC peptidyl-prolyl isomerase YP_004126745.1 2162177 R 596153 CDS YP_004126746.1 319762809 10104170 complement(2162761..2164131) 1 NC_014910.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: aav:Aave_2318 ErfK/YbiS/YcfS/YnhG; erfk/ybis/ycfs/ynhg family protein 2164131 10104170 Alide_2117 Alicycliphilus denitrificans BC erfk/ybis/ycfs/ynhg family protein YP_004126746.1 2162761 R 596153 CDS YP_004126747.1 319762810 10104171 complement(2164210..2165298) 1 NC_014910.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: aav:Aave_2319 TPR repeat-containing protein; tetratricopeptide tpr_1 repeat-containing protein 2165298 10104171 Alide_2118 Alicycliphilus denitrificans BC tetratricopeptide tpr_1 repeat-containing protein YP_004126747.1 2164210 R 596153 CDS YP_004126748.1 319762811 10104172 2165522..2166898 1 NC_014910.1 TIGRFAM: cysteinyl-tRNA synthetase; KEGG: ajs:Ajs_1623 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; cysteinyl-tRNA synthetase 2166898 10104172 Alide_2119 Alicycliphilus denitrificans BC cysteinyl-tRNA synthetase YP_004126748.1 2165522 D 596153 CDS YP_004126749.1 319762812 10104173 2166944..2167591 1 NC_014910.1 SMART: HhH-GPD family protein; manually curated; KEGG: dia:Dtpsy_2090 HhH-GPD family protein; PFAM: HhH-GPD family protein; DNA-3-methyladenine glycosylase ii 2167591 10104173 Alide_2120 Alicycliphilus denitrificans BC DNA-3-methyladenine glycosylase ii YP_004126749.1 2166944 D 596153 CDS YP_004126750.1 319762813 10104174 2167643..2168620 1 NC_014910.1 KEGG: ajs:Ajs_1625 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 2168620 10104174 Alide_2121 Alicycliphilus denitrificans BC acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_004126750.1 2167643 D 596153 CDS YP_004126751.1 319762814 10104175 2168688..2169695 1 NC_014910.1 KEGG: ajs:Ajs_1627 tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; tRNA(ile)-lysidine synthetase 2169695 10104175 Alide_2122 Alicycliphilus denitrificans BC tRNA(ile)-lysidine synthetase YP_004126751.1 2168688 D 596153 CDS YP_004126752.1 319762815 10104176 2169732..2171003 1 NC_014910.1 KEGG: aav:Aave_2324 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 2171003 10104176 Alide_2123 Alicycliphilus denitrificans BC aspartate kinase YP_004126752.1 2169732 D 596153 CDS YP_004126753.1 319762816 10104177 complement(2171050..2172405) 1 NC_014910.1 PFAM: Cl- channel voltage-gated family protein; KEGG: aav:Aave_4712 Cl-channel, voltage-gated family protein; cl- channel voltage-gated family protein 2172405 10104177 Alide_2124 Alicycliphilus denitrificans BC cl- channel voltage-gated family protein YP_004126753.1 2171050 R 596153 CDS YP_004126754.1 319762817 10104180 complement(2173137..2174051) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 2174051 10104180 Alide_2126 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004126754.1 2173137 R 596153 CDS YP_004126755.1 319762818 10104181 complement(2174048..2174371) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 2174371 10104181 Alide_2127 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004126755.1 2174048 R 596153 CDS YP_004126756.1 319762819 10104182 2174784..2175935 1 NC_014910.1 KEGG: dia:Dtpsy_1685 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 2175935 10104182 Alide_2128 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004126756.1 2174784 D 596153 CDS YP_004126757.1 319762820 10104183 2175932..2177131 1 NC_014910.1 PFAM: protein of unknown function DUF214; KEGG: dia:Dtpsy_1686 protein of unknown function DUF214; hypothetical protein 2177131 10104183 Alide_2129 Alicycliphilus denitrificans BC hypothetical protein YP_004126757.1 2175932 D 596153 CDS YP_004126758.1 319762821 10104184 2177136..2177846 1 NC_014910.1 KEGG: ajs:Ajs_1836 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2177846 10104184 Alide_2130 Alicycliphilus denitrificans BC ABC transporter YP_004126758.1 2177136 D 596153 CDS YP_004126759.1 319762822 10104185 complement(2177917..2179245) 1 NC_014910.1 KEGG: ajs:Ajs_1837 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; lytic murein transglycosylase 2179245 10104185 Alide_2131 Alicycliphilus denitrificans BC lytic murein transglycosylase YP_004126759.1 2177917 R 596153 CDS YP_004126760.1 319762823 10104186 2179292..2180728 1 NC_014910.1 PFAM: Exonuclease domain protein; Exonuclease RNase T and DNA polymerase III; KEGG: ajs:Ajs_1838 exonuclease I; SMART: Exonuclease; exodeoxyribonuclease I 2180728 10104186 Alide_2132 Alicycliphilus denitrificans BC exodeoxyribonuclease I YP_004126760.1 2179292 D 596153 CDS YP_004126761.1 319762824 10104187 2180700..2181548 1 NC_014910.1 PFAM: Silent information regulator protein Sir2; KEGG: ajs:Ajs_1839 silent information regulator protein Sir2; silent information regulator protein sir2 2181548 10104187 Alide_2133 Alicycliphilus denitrificans BC silent information regulator protein sir2 YP_004126761.1 2180700 D 596153 CDS YP_004126762.1 319762825 10104188 2181681..2184044 1 NC_014910.1 KEGG: dia:Dtpsy_1696 phytochrome sensor protein; PFAM: protein of unknown function UPF0118; GAF domain protein; SMART: GAF domain protein; hypothetical protein 2184044 10104188 Alide_2134 Alicycliphilus denitrificans BC hypothetical protein YP_004126762.1 2181681 D 596153 CDS YP_004126763.1 319762826 10104189 complement(2184026..2184595) 1 NC_014910.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_3219 GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase 2184595 10104189 Alide_2135 Alicycliphilus denitrificans BC Gcn5-like N-acetyltransferase YP_004126763.1 2184026 R 596153 CDS YP_004126764.1 319762827 10104190 complement(2184592..2185221) 1 NC_014910.1 KEGG: dia:Dtpsy_1697 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 2185221 10104190 Alide_2136 Alicycliphilus denitrificans BC uracil phosphoribosyltransferase YP_004126764.1 2184592 R 596153 CDS YP_004126765.1 319762828 10104191 complement(2185310..2186296) 1 NC_014910.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dia:Dtpsy_1698 pyridoxal-5'-phosphate-dependent protein beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 2186296 10104191 Alide_2137 Alicycliphilus denitrificans BC pyridoxal-5'-phosphate-dependent protein subunit beta YP_004126765.1 2185310 R 596153 CDS YP_004126766.1 319762829 10104192 2186547..2187251 1 NC_014910.1 PFAM: protein of unknown function DUF28; KEGG: dia:Dtpsy_1700 hypothetical protein; hypothetical protein 2187251 10104192 Alide_2138 Alicycliphilus denitrificans BC hypothetical protein YP_004126766.1 2186547 D 596153 CDS YP_004126767.1 319762830 10104194 2187915..2189339 1 NC_014910.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG; cytochrome c oxidase accessory protein ccog 2189339 10104194 Alide_2140 Alicycliphilus denitrificans BC cytochrome c oxidase accessory protein ccog YP_004126767.1 2187915 D 596153 CDS YP_004126768.1 319762831 10104195 2189366..2190784 1 NC_014910.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ara:Arad_12230 cytochrome bd-type quinol oxidase subunit 1; cytochrome bd ubiquinol oxidase subunit i 2190784 10104195 Alide_2141 Alicycliphilus denitrificans BC cytochrome bd ubiquinol oxidase subunit i YP_004126768.1 2189366 D 596153 CDS YP_004126769.1 319762832 10104196 2190788..2191798 1 NC_014910.1 KEGG: msl:Msil_2643 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit ii 2191798 10104196 Alide_2142 Alicycliphilus denitrificans BC cytochrome d ubiquinol oxidase, subunit ii YP_004126769.1 2190788 D 596153 CDS YP_004126770.1 319762833 10104197 2191798..2191944 1 NC_014910.1 PFAM: Protein of unknown function DUF2474; KEGG: ara:Arad_12232 hypothetical protein; hypothetical protein 2191944 10104197 Alide_2143 Alicycliphilus denitrificans BC hypothetical protein YP_004126770.1 2191798 D 596153 CDS YP_004126771.1 319762834 10104198 complement(2192365..2193060) 1 NC_014910.1 PFAM: LrgB family protein; KEGG: dia:Dtpsy_2405 LrgB family protein; lrgb family protein 2193060 10104198 Alide_2144 Alicycliphilus denitrificans BC lrgb family protein YP_004126771.1 2192365 R 596153 CDS YP_004126772.1 319762835 10104199 complement(2193057..2193458) 1 NC_014910.1 PFAM: LrgA family protein; KEGG: ctt:CtCNB1_3605 LrgA; lrga family protein 2193458 10104199 Alide_2145 Alicycliphilus denitrificans BC lrga family protein YP_004126772.1 2193057 R 596153 CDS YP_004126773.1 319762836 10104200 2193667..2195094 1 NC_014910.1 KEGG: mpt:Mpe_A0752 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2195094 10104200 Alide_2146 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004126773.1 2193667 D 596153 CDS YP_004126774.1 319762837 10104201 complement(2195183..2195884) 1 NC_014910.1 PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_1701 glutathione S-transferase domain protein; glutathione s-transferase domain-containing protein 2195884 10104201 Alide_2147 Alicycliphilus denitrificans BC glutathione s-transferase domain-containing protein YP_004126774.1 2195183 R 596153 CDS YP_004126775.1 319762838 10104202 complement(2195955..2197460) 1 NC_014910.1 PFAM: protein of unknown function DUF853 NPT hydrolase; KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase putative; hypothetical protein 2197460 10104202 Alide_2148 Alicycliphilus denitrificans BC hypothetical protein YP_004126775.1 2195955 R 596153 CDS YP_004126776.1 319762839 10104203 2197533..2198252 1 NC_014910.1 PFAM: protein of unknown function DUF28; KEGG: dia:Dtpsy_1703 hypothetical protein; hypothetical protein 2198252 10104203 Alide_2149 Alicycliphilus denitrificans BC hypothetical protein YP_004126776.1 2197533 D 596153 CDS YP_004126777.1 319762840 10104204 2198249..2199535 1 NC_014910.1 TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: ajs:Ajs_1899 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine--glycine ligase 2199535 10104204 Alide_2150 Alicycliphilus denitrificans BC phosphoribosylamine--glycine ligase YP_004126777.1 2198249 D 596153 CDS YP_004126778.1 319762841 10104205 2199535..2200461 1 NC_014910.1 KEGG: dia:Dtpsy_1705 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase; coproporphyrinogen oxidase 2200461 10104205 Alide_2151 Alicycliphilus denitrificans BC coproporphyrinogen oxidase YP_004126778.1 2199535 D 596153 CDS YP_004126779.1 319762842 10104206 2200545..2201210 1 NC_014910.1 KEGG: dia:Dtpsy_1706 iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap family protein 2201210 10104206 Alide_2152 Alicycliphilus denitrificans BC iojap family protein YP_004126779.1 2200545 D 596153 CDS YP_004126780.1 319762843 10104207 2201210..2201677 1 NC_014910.1 PFAM: protein of unknown function DUF163; KEGG: aav:Aave_3199 rRNA large subunit methyltransferase; hypothetical protein 2201677 10104207 Alide_2153 Alicycliphilus denitrificans BC hypothetical protein YP_004126780.1 2201210 D 596153 CDS YP_004126781.1 319762844 10104208 2201745..2202350 1 NC_014910.1 KEGG: dia:Dtpsy_1708 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 2202350 10104208 Alide_2154 Alicycliphilus denitrificans BC maf protein YP_004126781.1 2201745 D 596153 CDS YP_004126782.1 319762845 10104209 complement(2202356..2203075) 1 NC_014910.1 KEGG: dia:Dtpsy_1709 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein 2203075 10104209 Alide_2155 Alicycliphilus denitrificans BC cyclic nucleotide-binding protein YP_004126782.1 2202356 R 596153 CDS YP_004126783.1 319762846 10104210 complement(2203282..2204877) 1 NC_014910.1 KEGG: dia:Dtpsy_1710 cytochrome d1 heme region; PFAM: cytochrome c class I; hydroxylamine reductase 2204877 10104210 Alide_2156 Alicycliphilus denitrificans BC hydroxylamine reductase YP_004126783.1 2203282 R 596153 CDS YP_004126784.1 319762847 10104211 complement(2204870..2206090) 1 NC_014910.1 PFAM: Radical SAM domain protein; KEGG: dia:Dtpsy_1711 radical SAM domain protein; radical SAM domain-containing protein 2206090 10104211 Alide_2157 Alicycliphilus denitrificans BC radical SAM domain-containing protein YP_004126784.1 2204870 R 596153 CDS YP_004126785.1 319762848 10104212 complement(2206093..2206572) 1 NC_014910.1 KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator; AsnC family transcriptional regulator 2206572 10104212 Alide_2158 Alicycliphilus denitrificans BC AsnC family transcriptional regulator YP_004126785.1 2206093 R 596153 CDS YP_004126786.1 319762849 10104213 complement(2206553..2208055) 1 NC_014910.1 KEGG: dia:Dtpsy_1714 transcriptional regulator, AsnC family; hypothetical protein 2208055 10104213 Alide_2159 Alicycliphilus denitrificans BC hypothetical protein YP_004126786.1 2206553 R 596153 CDS YP_004126787.1 319762850 10104214 complement(2208059..2209267) 1 NC_014910.1 KEGG: ajs:Ajs_1910 cytochrome d1, heme region; cytochrome d1, heme region protein 2209267 10104214 Alide_2160 Alicycliphilus denitrificans BC cytochrome d1, heme region protein YP_004126787.1 2208059 R 596153 CDS YP_004126788.1 319762851 10104215 complement(2209264..2209617) 1 NC_014910.1 KEGG: dia:Dtpsy_1716 hypothetical protein; hypothetical protein 2209617 10104215 Alide_2161 Alicycliphilus denitrificans BC hypothetical protein YP_004126788.1 2209264 R 596153 CDS YP_004126789.1 319762852 10104216 complement(2209640..2211364) 1 NC_014910.1 KEGG: dia:Dtpsy_1717 hydroxylamine reductase; hydroxylamine reductase 2211364 10104216 Alide_2162 Alicycliphilus denitrificans BC hydroxylamine reductase YP_004126789.1 2209640 R 596153 CDS YP_004126790.1 319762853 10104217 2211576..2212403 1 NC_014910.1 KEGG: dia:Dtpsy_1718 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C-methyltransferase 2212403 10104217 Alide_2163 Alicycliphilus denitrificans BC uroporphyrin-III C-methyltransferase YP_004126790.1 2211576 D 596153 CDS YP_004126791.1 319762854 10104218 2212485..2213972 1 NC_014910.1 KEGG: ajs:Ajs_1914 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; ribonuclease, rne/rng family 2213972 10104218 Alide_2164 Alicycliphilus denitrificans BC ribonuclease, rne/rng family YP_004126791.1 2212485 D 596153 CDS YP_004126792.1 319762855 10104219 2214148..2215833 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pca:Pcar_0095 sensory transduction system, regulatory protein; SMART: GGDEF domain containing protein; diguanylate cyclase 2215833 10104219 Alide_2165 Alicycliphilus denitrificans BC diguanylate cyclase YP_004126792.1 2214148 D 596153 CDS YP_004126793.1 319762856 10104221 complement(2216609..2217760) 1 NC_014910.1 PFAM: aminotransferase class I and II; KEGG: dia:Dtpsy_1720 aminotransferase; aminotransferase class i and ii 2217760 10104221 Alide_2167 Alicycliphilus denitrificans BC aminotransferase class i and ii YP_004126793.1 2216609 R 596153 CDS YP_004126794.1 319762857 10104222 complement(2217902..2218843) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1721 transcriptional regulator CysB-like protein; LysR family transcriptional regulator 2218843 10104222 Alide_2168 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126794.1 2217902 R 596153 CDS YP_004126795.1 319762858 10104223 complement(2218887..2219267) 1 NC_014910.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: dia:Dtpsy_1722 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin b12) biosynthesis cbix protein 2219267 10104223 Alide_2169 Alicycliphilus denitrificans BC cobalamin (vitamin b12) biosynthesis cbix protein YP_004126795.1 2218887 R 596153 CDS YP_004126796.1 319762859 10104224 complement(2219301..2220401) 1 NC_014910.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dia:Dtpsy_1723 permease YjgP/YjgQ family protein; permease yjgp/yjgq family protein 2220401 10104224 Alide_2170 Alicycliphilus denitrificans BC permease yjgp/yjgq family protein YP_004126796.1 2219301 R 596153 CDS YP_004126797.1 319762860 10104225 complement(2220398..2221492) 1 NC_014910.1 KEGG: dia:Dtpsy_1724 permease YjgP/YjgQ family protein; manually curated; PFAM: permease YjgP/YjgQ family protein; permease yjgp/yjgq family protein 2221492 10104225 Alide_2171 Alicycliphilus denitrificans BC permease yjgp/yjgq family protein YP_004126797.1 2220398 R 596153 CDS YP_004126798.1 319762861 10104226 2221516..2223009 1 NC_014910.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ajs:Ajs_1921 PepA aminopeptidase; peptidase m17 leucyl aminopeptidase domain-containing protein 2223009 10104226 Alide_2172 Alicycliphilus denitrificans BC peptidase m17 leucyl aminopeptidase domain-containing protein YP_004126798.1 2221516 D 596153 CDS YP_004126799.1 319762862 10104227 2223009..2223473 1 NC_014910.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: ajs:Ajs_1922 DNA polymerase III chi subunit, HolC; DNA polymerase iii chi subunit holc 2223473 10104227 Alide_2173 Alicycliphilus denitrificans BC DNA polymerase iii chi subunit holc YP_004126799.1 2223009 D 596153 CDS YP_004126800.1 319762863 10104228 2223473..2223874 1 NC_014910.1 KEGG: dia:Dtpsy_1727 hypothetical protein; hypothetical protein 2223874 10104228 Alide_2174 Alicycliphilus denitrificans BC hypothetical protein YP_004126800.1 2223473 D 596153 CDS YP_004126801.1 319762864 10104229 2224003..2225136 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1925 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 2225136 10104229 Alide_2175 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004126801.1 2224003 D 596153 CDS YP_004126802.1 319762865 10104230 complement(2225227..2226234) 1 NC_014910.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ajs:Ajs_1926 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 2226234 10104230 Alide_2176 Alicycliphilus denitrificans BC d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein YP_004126802.1 2225227 R 596153 CDS YP_004126803.1 319762866 10104231 2227138..2227401 1 NC_014910.1 KEGG: bmd:BMD_3062 N-acetylmuramoyl-L-alanine amidase; hypothetical protein 2227401 10104231 Alide_2177 Alicycliphilus denitrificans BC hypothetical protein YP_004126803.1 2227138 D 596153 CDS YP_004126804.1 319762867 10104234 2228723..2229181 1 NC_014910.1 manually curated; KEGG: ajs:Ajs_1927 hypothetical protein; hypothetical protein 2229181 10104234 Alide_2180 Alicycliphilus denitrificans BC hypothetical protein YP_004126804.1 2228723 D 596153 CDS YP_004126805.1 319762868 10104235 2229206..2229955 1 NC_014910.1 KEGG: dia:Dtpsy_1731 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2257; hypothetical protein 2229955 10104235 Alide_2181 Alicycliphilus denitrificans BC hypothetical protein YP_004126805.1 2229206 D 596153 CDS YP_004126806.1 319762869 10104236 2230050..2230490 1 NC_014910.1 PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_1732 UspA domain protein; uspa domain-containing protein 2230490 10104236 Alide_2182 Alicycliphilus denitrificans BC uspa domain-containing protein YP_004126806.1 2230050 D 596153 CDS YP_004126807.1 319762870 10104237 complement(2230552..2231064) 1 NC_014910.1 KEGG: dac:Daci_4355 hypothetical protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; hemerythrin-like metal-binding protein 2231064 10104237 Alide_2183 Alicycliphilus denitrificans BC hemerythrin-like metal-binding protein YP_004126807.1 2230552 R 596153 CDS YP_004126808.1 319762871 10104238 complement(2231177..2232154) 1 NC_014910.1 KEGG: ajs:Ajs_1930 hypothetical protein; hypothetical protein 2232154 10104238 Alide_2184 Alicycliphilus denitrificans BC hypothetical protein YP_004126808.1 2231177 R 596153 CDS YP_004126809.1 319762872 10104239 complement(2232295..2233479) 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_1734 beta-ketothiolase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 2233479 10104239 Alide_2185 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004126809.1 2232295 R 596153 CDS YP_004126810.1 319762873 10104240 complement(2233588..2234358) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1735 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 2234358 10104240 Alide_2186 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004126810.1 2233588 R 596153 CDS YP_004126811.1 319762874 10104241 complement(2234392..2235069) 1 NC_014910.1 PFAM: pseudouridine synthase; KEGG: ajs:Ajs_1933 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 2235069 10104241 Alide_2187 Alicycliphilus denitrificans BC pseudouridine synthase YP_004126811.1 2234392 R 596153 CDS YP_004126812.1 319762875 10104242 complement(2235059..2237227) 1 NC_014910.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; KEGG: dia:Dtpsy_1737 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; pas sensor protein 2237227 10104242 Alide_2188 Alicycliphilus denitrificans BC pas sensor protein YP_004126812.1 2235059 R 596153 CDS YP_004126813.1 319762876 10104243 complement(2237273..2237671) 1 NC_014910.1 KEGG: dia:Dtpsy_1738 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type; peptidyl-prolyl isomerase 2237671 10104243 Alide_2189 Alicycliphilus denitrificans BC peptidyl-prolyl isomerase YP_004126813.1 2237273 R 596153 CDS YP_004126814.1 319762877 10104244 2237951..2238745 1 NC_014910.1 KEGG: dia:Dtpsy_1772 two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; LuxR family transcriptional regulator 2238745 10104244 Alide_2190 Alicycliphilus denitrificans BC LuxR family transcriptional regulator YP_004126814.1 2237951 D 596153 CDS YP_004126815.1 319762878 10104245 2238783..2239643 1 NC_014910.1 KEGG: dia:Dtpsy_1773 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; ATP-binding domain-containing protein 2239643 10104245 Alide_2191 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004126815.1 2238783 D 596153 CDS YP_004126816.1 319762879 10104246 2239735..2240322 1 NC_014910.1 KEGG: dia:Dtpsy_1406 hypothetical protein; hypothetical protein 2240322 10104246 Alide_2192 Alicycliphilus denitrificans BC hypothetical protein YP_004126816.1 2239735 D 596153 CDS YP_004126817.1 319762880 10104247 complement(2240330..2241160) 1 NC_014910.1 PFAM: Redoxin domain protein; KEGG: ajs:Ajs_2433 redoxin domain-containing protein; redoxin domain-containing protein 2241160 10104247 Alide_2193 Alicycliphilus denitrificans BC redoxin domain-containing protein YP_004126817.1 2240330 R 596153 CDS YP_004126818.1 319762881 10104248 2241387..2242010 1 NC_014910.1 KEGG: dia:Dtpsy_1426 2',5' RNA ligase; 2'-5' RNA ligase 2242010 10104248 Alide_2194 Alicycliphilus denitrificans BC 2'-5' RNA ligase YP_004126818.1 2241387 D 596153 CDS YP_004126819.1 319762882 10104249 complement(2242085..2242564) 1 NC_014910.1 KEGG: ajs:Ajs_2417 hypothetical protein; hypothetical protein 2242564 10104249 Alide_2195 Alicycliphilus denitrificans BC hypothetical protein YP_004126819.1 2242085 R 596153 CDS YP_004126820.1 319762883 10104250 complement(2242691..2243161) 1 NC_014910.1 KEGG: dia:Dtpsy_1431 hypothetical protein; hypothetical protein 2243161 10104250 Alide_2196 Alicycliphilus denitrificans BC hypothetical protein YP_004126820.1 2242691 R 596153 CDS YP_004126821.1 319762884 10104251 complement(2243158..2243601) 1 NC_014910.1 KEGG: dia:Dtpsy_1432 transmembrane anti-sigma factor; transmembrane anti-sigma factor 2243601 10104251 Alide_2197 Alicycliphilus denitrificans BC transmembrane anti-sigma factor YP_004126821.1 2243158 R 596153 CDS YP_004126822.1 319762885 10104252 complement(2243617..2244171) 1 NC_014910.1 KEGG: dia:Dtpsy_1433 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 family RNA polymerase sigma factor 2244171 10104252 Alide_2198 Alicycliphilus denitrificans BC sigma-70 family RNA polymerase sigma factor YP_004126822.1 2243617 R 596153 CDS YP_004126823.1 319762886 10104253 2244274..2244594 1 NC_014910.1 KEGG: dia:Dtpsy_1434 hypothetical protein; hypothetical protein 2244594 10104253 Alide_2199 Alicycliphilus denitrificans BC hypothetical protein YP_004126823.1 2244274 D 596153 CDS YP_004126824.1 319762887 10104254 2244646..2246097 1 NC_014910.1 KEGG: dia:Dtpsy_1435 23S rRNA 5-methyluridine methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; RNA methyltransferase, trma family 2246097 10104254 Alide_2200 Alicycliphilus denitrificans BC RNA methyltransferase, trma family YP_004126824.1 2244646 D 596153 CDS YP_004126825.1 319762888 10104255 2246109..2247452 1 NC_014910.1 TIGRFAM: D-serine ammonia-lyase; KEGG: ajs:Ajs_2250 D-serine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; d-serine ammonia-lyase 2247452 10104255 Alide_2201 Alicycliphilus denitrificans BC d-serine ammonia-lyase YP_004126825.1 2246109 D 596153 CDS YP_004126826.1 319762889 10104256 complement(2247466..2248056) 1 NC_014910.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: ajs:Ajs_2244 hypothetical protein; hypothetical protein 2248056 10104256 Alide_2202 Alicycliphilus denitrificans BC hypothetical protein YP_004126826.1 2247466 R 596153 CDS YP_004126827.1 319762890 10104257 2248238..2248696 1 NC_014910.1 KEGG: har:HEAR1365 azurin precursor; TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; azurin 2248696 10104257 Alide_2203 Alicycliphilus denitrificans BC azurin YP_004126827.1 2248238 D 596153 CDS YP_004126828.1 319762891 10104258 2248773..2251199 1 NC_014910.1 KEGG: dia:Dtpsy_1631 radical SAM domain protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 2251199 10104258 Alide_2204 Alicycliphilus denitrificans BC radical SAM domain-containing protein YP_004126828.1 2248773 D 596153 CDS YP_004126829.1 319762892 10104259 complement(2251309..2252505) 1 NC_014910.1 KEGG: ajs:Ajs_2151 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II; aspartate transaminase 2252505 10104259 Alide_2205 Alicycliphilus denitrificans BC aspartate transaminase YP_004126829.1 2251309 R 596153 CDS YP_004126830.1 319762893 10104260 2252621..2254708 1 NC_014910.1 TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: dia:Dtpsy_1636 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein; excinuclease abc, b subunit 2254708 10104260 Alide_2206 Alicycliphilus denitrificans BC excinuclease abc, b subunit YP_004126830.1 2252621 D 596153 CDS YP_004126831.1 319762894 10104261 2254959..2255495 1 NC_014910.1 KEGG: dia:Dtpsy_1637 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; iron-sulfur cluster assembly transcription factor iscr 2255495 10104261 Alide_2207 Alicycliphilus denitrificans BC iron-sulfur cluster assembly transcription factor iscr YP_004126831.1 2254959 D 596153 CDS YP_004126832.1 319762895 10104262 2255571..2256791 1 NC_014910.1 TIGRFAM: cysteine desulfurase IscS; KEGG: dia:Dtpsy_1638 cysteine desulfurase IscS; PFAM: aminotransferase class V; cysteine desulfurase iscs 2256791 10104262 Alide_2208 Alicycliphilus denitrificans BC cysteine desulfurase iscs YP_004126832.1 2255571 D 596153 CDS YP_004126833.1 319762896 10104263 2256814..2257215 1 NC_014910.1 KEGG: dia:Dtpsy_1639 FeS cluster assembly scaffold IscU; TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; fes cluster assembly scaffold iscu 2257215 10104263 Alide_2209 Alicycliphilus denitrificans BC fes cluster assembly scaffold iscu YP_004126833.1 2256814 D 596153 CDS YP_004126834.1 319762897 10104264 2257223..2257546 1 NC_014910.1 KEGG: dia:Dtpsy_1640 iron-sulfur cluster assembly protein IscA; TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly protein isca 2257546 10104264 Alide_2210 Alicycliphilus denitrificans BC iron-sulfur cluster assembly protein isca YP_004126834.1 2257223 D 596153 CDS YP_004126835.1 319762898 10104265 2257604..2258122 1 NC_014910.1 TIGRFAM: co-chaperone Hsc20; PFAM: HSC20 oligomerisation; heat shock protein DnaJ domain protein; KEGG: dia:Dtpsy_1641 co-chaperone Hsc20; SMART: heat shock protein DnaJ domain protein; co-chaperone hsc20 2258122 10104265 Alide_2211 Alicycliphilus denitrificans BC co-chaperone hsc20 YP_004126835.1 2257604 D 596153 CDS YP_004126836.1 319762899 10104266 2258159..2260027 1 NC_014910.1 KEGG: dia:Dtpsy_1642 chaperone protein HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; fe-s protein assembly chaperone hsca 2260027 10104266 Alide_2212 Alicycliphilus denitrificans BC fe-s protein assembly chaperone hsca YP_004126836.1 2258159 D 596153 CDS YP_004126837.1 319762900 10104267 2260063..2260401 1 NC_014910.1 KEGG: dia:Dtpsy_1643 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; (2Fe-2S)-binding protein 2260401 10104267 Alide_2213 Alicycliphilus denitrificans BC (2Fe-2S)-binding protein YP_004126837.1 2260063 D 596153 CDS YP_004126838.1 319762901 10104268 2260401..2261129 1 NC_014910.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: ajs:Ajs_2138 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; DNA polymerase III subunit epsilon 2261129 10104268 Alide_2214 Alicycliphilus denitrificans BC DNA polymerase III subunit epsilon YP_004126838.1 2260401 D 596153 CDS YP_004126839.1 319762902 10104271 2261423..2262535 1 NC_014910.1 PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2136 FAD dependent oxidoreductase; FAD-dependent oxidoreductase 2262535 10104271 Alide_2215 Alicycliphilus denitrificans BC FAD-dependent oxidoreductase YP_004126839.1 2261423 D 596153 CDS YP_004126840.1 319762903 10104272 2262668..2262976 1 NC_014910.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB; hypothetical protein 2262976 10104272 Alide_2216 Alicycliphilus denitrificans BC hypothetical protein YP_004126840.1 2262668 D 596153 CDS YP_004126841.1 319762904 10104273 2263001..2263405 1 NC_014910.1 KEGG: dia:Dtpsy_1648 hypothetical protein; hypothetical protein 2263405 10104273 Alide_2217 Alicycliphilus denitrificans BC hypothetical protein YP_004126841.1 2263001 D 596153 CDS YP_004126842.1 319762905 10104274 2263407..2263706 1 NC_014910.1 KEGG: ajs:Ajs_2133 hypothetical protein; hypothetical protein 2263706 10104274 Alide_2218 Alicycliphilus denitrificans BC hypothetical protein YP_004126842.1 2263407 D 596153 CDS YP_004126843.1 319762906 10104275 complement(2263759..2264805) 1 NC_014910.1 TIGRFAM: dihydroorotate dehydrogenase; KEGG: ajs:Ajs_2132 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase; dihydroorotate dehydrogenase 2264805 10104275 Alide_2219 Alicycliphilus denitrificans BC dihydroorotate dehydrogenase YP_004126843.1 2263759 R 596153 CDS YP_004126844.1 319762907 10104276 2264841..2265530 1 NC_014910.1 TIGRFAM: ribose 5-phosphate isomerase; KEGG: ajs:Ajs_2131 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 2265530 10104276 Alide_2220 Alicycliphilus denitrificans BC ribose 5-phosphate isomerase YP_004126844.1 2264841 D 596153 CDS YP_004126845.1 319762908 10104277 complement(2265527..2266168) 1 NC_014910.1 PFAM: glutaredoxin; KEGG: dia:Dtpsy_1652 glutaredoxin; glutaredoxin 2266168 10104277 Alide_2221 Alicycliphilus denitrificans BC glutaredoxin YP_004126845.1 2265527 R 596153 CDS YP_004126846.1 319762909 10104278 complement(2266290..2268323) 1 NC_014910.1 KEGG: ajs:Ajs_2129 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; oligopeptidase a 2268323 10104278 Alide_2222 Alicycliphilus denitrificans BC oligopeptidase a YP_004126846.1 2266290 R 596153 CDS YP_004126847.1 319762910 10104279 complement(2268361..2269209) 1 NC_014910.1 KEGG: dac:Daci_3983 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methylenetetrahydrofolate dehydrogenase (nadp(+)) 2269209 10104279 Alide_2223 Alicycliphilus denitrificans BC methylenetetrahydrofolate dehydrogenase (nadp(+)) YP_004126847.1 2268361 R 596153 CDS YP_004126848.1 319762911 10104280 complement(2269292..2269918) 1 NC_014910.1 KEGG: ctt:CtCNB1_2245 two component transcriptional regulator, LuxR; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver 2269918 10104280 Alide_2224 Alicycliphilus denitrificans BC response regulator receiver YP_004126848.1 2269292 R 596153 CDS YP_004126849.1 319762912 10104281 complement(2269915..2272467) 1 NC_014910.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dia:Dtpsy_1656 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; pas sensor protein 2272467 10104281 Alide_2225 Alicycliphilus denitrificans BC pas sensor protein YP_004126849.1 2269915 R 596153 CDS YP_004126850.1 319762913 10104282 2272664..2275360 1 NC_014910.1 KEGG: dia:Dtpsy_1657 pyruvate dehydrogenase subunit E1; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: Transketolase domain-containing protein; 2-oxo-acid dehydrogenase E1 2275360 10104282 Alide_2226 Alicycliphilus denitrificans BC 2-oxo-acid dehydrogenase E1 YP_004126850.1 2272664 D 596153 CDS YP_004126851.1 319762914 10104283 2275379..2277028 1 NC_014910.1 KEGG: dia:Dtpsy_1658 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 2277028 10104283 Alide_2227 Alicycliphilus denitrificans BC pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_004126851.1 2275379 D 596153 CDS YP_004126852.1 319762915 10104284 2277042..2278871 1 NC_014910.1 KEGG: dia:Dtpsy_1659 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; biotin/lipoyl attachment domain-containing protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 2278871 10104284 Alide_2228 Alicycliphilus denitrificans BC dihydrolipoamide dehydrogenase YP_004126852.1 2277042 D 596153 CDS YP_004126853.1 319762916 10104285 2279023..2279304 1 NC_014910.1 KEGG: lth:KLTH0B01034g KLTH0B01034p; hypothetical protein 2279304 10104285 Alide_2229 Alicycliphilus denitrificans BC hypothetical protein YP_004126853.1 2279023 D 596153 CDS YP_004126854.1 319762917 10104286 2279294..2279668 1 NC_014910.1 KEGG: mgr:MGG_07539 hypothetical protein; hypothetical protein 2279668 10104286 Alide_2230 Alicycliphilus denitrificans BC hypothetical protein YP_004126854.1 2279294 D 596153 CDS YP_004126855.1 319762918 10104287 2280168..2281136 1 NC_014910.1 KEGG: aav:Aave_2466 hypothetical protein; hypothetical protein 2281136 10104287 Alide_2231 Alicycliphilus denitrificans BC hypothetical protein YP_004126855.1 2280168 D 596153 CDS YP_004126856.1 319762919 10104288 2281203..2282633 1 NC_014910.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pna:Pnap_3558 filamentation induced by cAMP protein Fic; Fic family protein 2282633 10104288 Alide_2232 Alicycliphilus denitrificans BC Fic family protein YP_004126856.1 2281203 D 596153 CDS YP_004126857.1 319762920 10104289 2282693..2283592 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rfr:Rfer_0879 LysR family transcriptional regulator; LysR family transcriptional regulator 2283592 10104289 Alide_2233 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126857.1 2282693 D 596153 CDS YP_004126858.1 319762921 10104290 2283699..2284400 1 NC_014910.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: cai:Caci_5818 dimethylmenaquinone methyltransferase; dimethylmenaquinone methyltransferase 2284400 10104290 Alide_2234 Alicycliphilus denitrificans BC dimethylmenaquinone methyltransferase YP_004126858.1 2283699 D 596153 CDS YP_004126859.1 319762922 10104291 2284397..2285761 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: rsh:Rsph17029_3583 MmgE/PrpD family protein; mmge/prpd family protein 2285761 10104291 Alide_2235 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004126859.1 2284397 D 596153 CDS YP_004126860.1 319762923 10104292 2285779..2286768 1 NC_014910.1 KEGG: reu:Reut_B3949 hypothetical protein; hypothetical protein 2286768 10104292 Alide_2236 Alicycliphilus denitrificans BC hypothetical protein YP_004126860.1 2285779 D 596153 CDS YP_004126861.1 319762924 10104293 2286886..2287827 1 NC_014910.1 KEGG: dia:Dtpsy_1661 hypothetical protein; hypothetical protein 2287827 10104293 Alide_2237 Alicycliphilus denitrificans BC hypothetical protein YP_004126861.1 2286886 D 596153 CDS YP_004126862.1 319762925 10104295 2288487..2289371 1 NC_014910.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ajs:Ajs_2093 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 2289371 10104295 Alide_2239 Alicycliphilus denitrificans BC 6-phosphogluconate dehydrogenase YP_004126862.1 2288487 D 596153 CDS YP_004126863.1 319762926 10104296 complement(2289375..2290145) 1 NC_014910.1 KEGG: rpc:RPC_0065 OmpA/MotB; hypothetical protein 2290145 10104296 Alide_2240 Alicycliphilus denitrificans BC hypothetical protein YP_004126863.1 2289375 R 596153 CDS YP_004126864.1 319762927 10104297 complement(2290088..2290594) 1 NC_014910.1 PFAM: protein of unknown function DUF55; KEGG: aav:Aave_2834 hypothetical protein; hypothetical protein 2290594 10104297 Alide_2241 Alicycliphilus denitrificans BC hypothetical protein YP_004126864.1 2290088 R 596153 CDS YP_004126865.1 319762928 10104298 complement(2290591..2290842) 1 NC_014910.1 PFAM: Transglycosylase-associated protein; KEGG: aav:Aave_2831 transglycosylase-associated protein; transglycosylase-associated protein 2290842 10104298 Alide_2242 Alicycliphilus denitrificans BC transglycosylase-associated protein YP_004126865.1 2290591 R 596153 CDS YP_004126866.1 319762929 10104299 complement(2291018..2291572) 1 NC_014910.1 KEGG: ajs:Ajs_2091 NLP/P60 protein; manually curated; PFAM: NLP/P60 protein; nlp/p60 protein 2291572 10104299 Alide_2243 Alicycliphilus denitrificans BC nlp/p60 protein YP_004126866.1 2291018 R 596153 CDS YP_004126867.1 319762930 10104300 2291886..2293310 1 NC_014910.1 PFAM: amino acid permease-associated region; KEGG: dac:Daci_3739 D-alanine/D-serine/glycine permease; amino acid permease 2293310 10104300 Alide_2244 Alicycliphilus denitrificans BC amino acid permease YP_004126867.1 2291886 D 596153 CDS YP_004126868.1 319762931 10104301 2293310..2293414 1 NC_014910.1 hypothetical protein 2293414 10104301 Alide_2245 Alicycliphilus denitrificans BC hypothetical protein YP_004126868.1 2293310 D 596153 CDS YP_004126869.1 319762932 10104302 2293411..2294829 1 NC_014910.1 KEGG: dia:Dtpsy_1665 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 2294829 10104302 Alide_2246 Alicycliphilus denitrificans BC EmrB/QacA family drug resistance transporter YP_004126869.1 2293411 D 596153 CDS YP_004126870.1 319762933 10104303 2295026..2298202 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE domain protein; PAS fold domain protein; KEGG: dia:Dtpsy_1667 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase 2298202 10104303 Alide_2247 Alicycliphilus denitrificans BC diguanylate cyclase YP_004126870.1 2295026 D 596153 CDS YP_004126871.1 319762934 10104304 2298217..2298546 1 NC_014910.1 PFAM: protein of unknown function UPF0060; KEGG: ajs:Ajs_2087 hypothetical protein; hypothetical protein 2298546 10104304 Alide_2248 Alicycliphilus denitrificans BC hypothetical protein YP_004126871.1 2298217 D 596153 CDS YP_004126872.1 319762935 10104305 complement(2298701..2299360) 1 NC_014910.1 PFAM: protein of unknown function DUF1555; KEGG: nar:Saro_2119 hypothetical protein; hypothetical protein 2299360 10104305 Alide_2249 Alicycliphilus denitrificans BC hypothetical protein YP_004126872.1 2298701 R 596153 CDS YP_004126873.1 319762936 10104306 2299629..2303153 1 NC_014910.1 KEGG: dia:Dtpsy_1669 chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; chromosome segregation protein smc 2303153 10104306 Alide_2250 Alicycliphilus denitrificans BC chromosome segregation protein smc YP_004126873.1 2299629 D 596153 CDS YP_004126874.1 319762937 10104307 2303164..2304258 1 NC_014910.1 SMART: ZipA FtsZ-binding region protein; KEGG: dia:Dtpsy_1670 ZipA FtsZ-binding region; zipa ftsz-binding region protein 2304258 10104307 Alide_2251 Alicycliphilus denitrificans BC zipa ftsz-binding region protein YP_004126874.1 2303164 D 596153 CDS YP_004126875.1 319762938 10104308 2304270..2306423 1 NC_014910.1 SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; TIGRFAM: DNA ligase, NAD-dependent; KEGG: ajs:Ajs_2083 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein; DNA ligase, nad-dependent 2306423 10104308 Alide_2252 Alicycliphilus denitrificans BC DNA ligase, nad-dependent YP_004126875.1 2304270 D 596153 CDS YP_004126876.1 319762939 10104309 2306427..2307362 1 NC_014910.1 PFAM: Patatin; KEGG: ajs:Ajs_2082 patatin; patatin 2307362 10104309 Alide_2253 Alicycliphilus denitrificans BC patatin YP_004126876.1 2306427 D 596153 CDS YP_004126877.1 319762940 10104310 2307550..2310033 1 NC_014910.1 KEGG: ajs:Ajs_2081 glycosyl transferase family protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; peptidoglycan glycosyltransferase 2310033 10104310 Alide_2254 Alicycliphilus denitrificans BC peptidoglycan glycosyltransferase YP_004126877.1 2307550 D 596153 CDS YP_004126878.1 319762941 10104311 2310044..2311240 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_1675 major facilitator superfamily MFS_1; major facilitator superfamily protein 2311240 10104311 Alide_2255 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004126878.1 2310044 D 596153 CDS YP_004126879.1 319762942 10104312 complement(2311233..2311781) 1 NC_014910.1 PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_1676 NUDIX hydrolase; nudix hydrolase 2311781 10104312 Alide_2256 Alicycliphilus denitrificans BC nudix hydrolase YP_004126879.1 2311233 R 596153 CDS YP_004126880.1 319762943 10104313 complement(2311849..2312544) 1 NC_014910.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dia:Dtpsy_1677 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (faa) hydrolase 2312544 10104313 Alide_2257 Alicycliphilus denitrificans BC fumarylacetoacetate (faa) hydrolase YP_004126880.1 2311849 R 596153 CDS YP_004126881.1 319762944 10104314 2312658..2313323 1 NC_014910.1 KEGG: dia:Dtpsy_1678 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; maleylacetoacetate isomerase 2313323 10104314 Alide_2258 Alicycliphilus denitrificans BC maleylacetoacetate isomerase YP_004126881.1 2312658 D 596153 CDS YP_004126882.1 319762945 10104315 2313316..2314164 1 NC_014910.1 PFAM: protein of unknown function DUF152; KEGG: dia:Dtpsy_1679 protein of unknown function DUF152; hypothetical protein 2314164 10104315 Alide_2259 Alicycliphilus denitrificans BC hypothetical protein YP_004126882.1 2313316 D 596153 CDS YP_004126883.1 319762946 10104316 complement(2314084..2314374) 1 NC_014910.1 KEGG: dia:Dtpsy_1680 hypothetical protein; hypothetical protein 2314374 10104316 Alide_2260 Alicycliphilus denitrificans BC hypothetical protein YP_004126883.1 2314084 R 596153 CDS YP_004126884.1 319762947 10104317 2314525..2316234 1 NC_014910.1 KEGG: dia:Dtpsy_1681 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; poly(r)-hydroxyalkanoic acid synthase, class i 2316234 10104317 Alide_2261 Alicycliphilus denitrificans BC poly(r)-hydroxyalkanoic acid synthase, class i YP_004126884.1 2314525 D 596153 CDS YP_004126885.1 319762948 10104318 2316314..2317492 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ajs:Ajs_2073 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 2317492 10104318 Alide_2262 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004126885.1 2316314 D 596153 CDS YP_004126886.1 319762949 10104319 2317652..2318389 1 NC_014910.1 KEGG: ajs:Ajs_2072 3-ketoacyl-(acyl-carrier-protein) reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; acetoacetyl-CoA reductase 2318389 10104319 Alide_2263 Alicycliphilus denitrificans BC acetoacetyl-CoA reductase YP_004126886.1 2317652 D 596153 CDS YP_004126887.1 319762950 10104320 complement(2318818..2320746) 1 NC_014910.1 KEGG: ajs:Ajs_2071 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2320746 10104320 Alide_2264 Alicycliphilus denitrificans BC ABC transporter YP_004126887.1 2318818 R 596153 CDS YP_004126888.1 319762951 10104321 complement(2320802..2321788) 1 NC_014910.1 KEGG: dac:Daci_3609 hypothetical protein; hypothetical protein 2321788 10104321 Alide_2265 Alicycliphilus denitrificans BC hypothetical protein YP_004126888.1 2320802 R 596153 CDS YP_004126889.1 319762952 10104322 complement(2321846..2323075) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_3610 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 2323075 10104322 Alide_2266 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004126889.1 2321846 R 596153 CDS YP_004126890.1 319762953 10104323 complement(2323077..2324657) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dac:Daci_3611 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 2324657 10104323 Alide_2267 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004126890.1 2323077 R 596153 CDS YP_004126891.1 319762954 10104324 complement(2324762..2325766) 1 NC_014910.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_3612 LysR family transcriptional regulator; LysR family transcriptional regulator 2325766 10104324 Alide_2268 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126891.1 2324762 R 596153 CDS YP_004126892.1 319762955 10104325 complement(2325768..2326691) 1 NC_014910.1 KEGG: ajs:Ajs_2070 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-n5) methyltransferase, ribosomal protein l3-specific 2326691 10104325 Alide_2269 Alicycliphilus denitrificans BC protein-(glutamine-n5) methyltransferase, ribosomal protein l3-specific YP_004126892.1 2325768 R 596153 CDS YP_004126893.1 319762956 10104326 complement(2326688..2327866) 1 NC_014910.1 KEGG: ajs:Ajs_2069 succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; succinyl-diaminopimelate desuccinylase 2327866 10104326 Alide_2270 Alicycliphilus denitrificans BC succinyl-diaminopimelate desuccinylase YP_004126893.1 2326688 R 596153 CDS YP_004126894.1 319762957 10104327 complement(2327890..2329053) 1 NC_014910.1 KEGG: dia:Dtpsy_1891 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; twitching motility protein 2329053 10104327 Alide_2271 Alicycliphilus denitrificans BC twitching motility protein YP_004126894.1 2327890 R 596153 CDS YP_004126895.1 319762958 10104328 complement(2329116..2329940) 1 NC_014910.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: dia:Dtpsy_1890 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 2329940 10104328 Alide_2272 Alicycliphilus denitrificans BC 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_004126895.1 2329116 R 596153 CDS YP_004126896.1 319762959 10104329 complement(2329948..2331150) 1 NC_014910.1 KEGG: dia:Dtpsy_1889 succinyldiaminopimelate transaminase; TIGRFAM: succinyldiaminopimelate transaminase; PFAM: aminotransferase class I and II; succinyldiaminopimelate transaminase 2331150 10104329 Alide_2273 Alicycliphilus denitrificans BC succinyldiaminopimelate transaminase YP_004126896.1 2329948 R 596153 CDS YP_004126897.1 319762960 10104330 complement(2331242..2331925) 1 NC_014910.1 KEGG: dia:Dtpsy_1887 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; electron transport complex, rnfabcdge type, b subunit 2331925 10104330 Alide_2274 Alicycliphilus denitrificans BC electron transport complex, rnfabcdge type, b subunit YP_004126897.1 2331242 R 596153 CDS YP_004126898.1 319762961 10104331 complement(2331941..2333257) 1 NC_014910.1 KEGG: ajs:Ajs_2063 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; polyhydroxyalkanoate depolymerase 2333257 10104331 Alide_2275 Alicycliphilus denitrificans BC polyhydroxyalkanoate depolymerase YP_004126898.1 2331941 R 596153 CDS YP_004126899.1 319762962 10104332 complement(2333433..2334491) 1 NC_014910.1 PFAM: RelA/SpoT domain protein; KEGG: dia:Dtpsy_1885 RelA/SpoT domain protein; rela/spot domain-containing protein 2334491 10104332 Alide_2276 Alicycliphilus denitrificans BC rela/spot domain-containing protein YP_004126899.1 2333433 R 596153 CDS YP_004126900.1 319762963 10104333 complement(2334558..2335508) 1 NC_014910.1 KEGG: dia:Dtpsy_1883 tRNA-dihydrouridine synthase A; TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; tim-barrel protein, yjbn family 2335508 10104333 Alide_2277 Alicycliphilus denitrificans BC tim-barrel protein, yjbn family YP_004126900.1 2334558 R 596153 CDS YP_004126901.1 319762964 10104334 2335793..2336254 1 NC_014910.1 PFAM: MaoC domain protein dehydratase; KEGG: pde:Pden_4680 dehydratase; MaoC domain-containing protein 2336254 10104334 Alide_2278 Alicycliphilus denitrificans BC MaoC domain-containing protein YP_004126901.1 2335793 D 596153 CDS YP_004126902.1 319762965 10104335 2336258..2336866 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: pde:Pden_4681 TetR family transcriptional regulator; regulatory protein tetr 2336866 10104335 Alide_2279 Alicycliphilus denitrificans BC regulatory protein tetr YP_004126902.1 2336258 D 596153 CDS YP_004126903.1 319762966 10104336 2337055..2338179 1 NC_014910.1 PFAM: Saccharopine dehydrogenase; KEGG: dia:Dtpsy_1846 saccharopine dehydrogenase; saccharopine dehydrogenase 2338179 10104336 Alide_2280 Alicycliphilus denitrificans BC saccharopine dehydrogenase YP_004126903.1 2337055 D 596153 CDS YP_004126904.1 319762967 10104337 complement(2338176..2340011) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_1847 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 2340011 10104337 Alide_2281 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004126904.1 2338176 R 596153 CDS YP_004126905.1 319762968 10104338 complement(2340138..2340773) 1 NC_014910.1 KEGG: dia:Dtpsy_1848 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2340773 10104338 Alide_2282 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004126905.1 2340138 R 596153 CDS YP_004126906.1 319762969 10104339 complement(2340787..2341719) 1 NC_014910.1 PFAM: pyruvate carboxyltransferase; KEGG: sno:Snov_3532 pyruvate carboxyltransferase; pyruvate carboxyltransferase 2341719 10104339 Alide_2283 Alicycliphilus denitrificans BC pyruvate carboxyltransferase YP_004126906.1 2340787 R 596153 CDS YP_004126907.1 319762970 10104340 complement(2341722..2342687) 1 NC_014910.1 KEGG: aav:Aave_3152 hypothetical protein; hypothetical protein 2342687 10104340 Alide_2284 Alicycliphilus denitrificans BC hypothetical protein YP_004126907.1 2341722 R 596153 CDS YP_004126908.1 319762971 10104341 complement(2342725..2343948) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hne:HNE_1079 L-carnitine dehydratase; l-carnitine dehydratase/bile acid-inducible protein f 2343948 10104341 Alide_2285 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004126908.1 2342725 R 596153 CDS YP_004126909.1 319762972 10104342 complement(2344052..2345488) 1 NC_014910.1 KEGG: rpt:Rpal_2644 transcriptional regulator, XRE family; PFAM: Protein of unknown function DUF2083,transcriptional regulator; protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; hypothetical protein 2345488 10104342 Alide_2286 Alicycliphilus denitrificans BC hypothetical protein YP_004126909.1 2344052 R 596153 CDS YP_004126910.1 319762973 10104343 2345619..2347760 1 NC_014910.1 TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: dia:Dtpsy_1849 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 2347760 10104343 Alide_2287 Alicycliphilus denitrificans BC methylmalonyl-CoA mutase large subunit YP_004126910.1 2345619 D 596153 CDS YP_004126911.1 319762974 10104344 2347777..2348784 1 NC_014910.1 KEGG: dia:Dtpsy_1850 arginine/ornithine transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; lao/ao transport system atpase 2348784 10104344 Alide_2288 Alicycliphilus denitrificans BC lao/ao transport system atpase YP_004126911.1 2347777 D 596153 CDS YP_004126912.1 319762975 10104345 2348841..2350373 1 NC_014910.1 PFAM: carboxyl transferase; KEGG: ajs:Ajs_2042 carboxyl transferase; carboxyl transferase 2350373 10104345 Alide_2289 Alicycliphilus denitrificans BC carboxyl transferase YP_004126912.1 2348841 D 596153 CDS YP_004126913.1 319762976 10104346 2350531..2352579 1 NC_014910.1 KEGG: dia:Dtpsy_1853 carbamoyl-phosphate synthase L chain ATP-binding; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxylase 2352579 10104346 Alide_2290 Alicycliphilus denitrificans BC acetyl-CoA carboxylase, biotin carboxylase YP_004126913.1 2350531 D 596153 CDS YP_004126914.1 319762977 10104347 2352638..2353099 1 NC_014910.1 KEGG: dia:Dtpsy_1854 lactoylglutathione lyase; lactoylglutathione lyase 2353099 10104347 Alide_2291 Alicycliphilus denitrificans BC lactoylglutathione lyase YP_004126914.1 2352638 D 596153 CDS YP_004126915.1 319762978 10104348 2353466..2354539 1 NC_014910.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: ajs:Ajs_2045 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; biotin synthase 2354539 10104348 Alide_2292 Alicycliphilus denitrificans BC biotin synthase YP_004126915.1 2353466 D 596153 CDS YP_004126916.1 319762979 10104349 complement(2354623..2355630) 1 NC_014910.1 KEGG: pol:Bpro_1449 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 2355630 10104349 Alide_2293 Alicycliphilus denitrificans BC twin-arginine translocation pathway signal YP_004126916.1 2354623 R 596153 CDS YP_004126917.1 319762980 10104350 2355752..2356432 1 NC_014910.1 KEGG: pol:Bpro_1450 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 2356432 10104350 Alide_2294 Alicycliphilus denitrificans BC response regulator receiver YP_004126917.1 2355752 D 596153 CDS YP_004126918.1 319762981 10104351 2356398..2357786 1 NC_014910.1 KEGG: pol:Bpro_1451 histidine kinase; PFAM: Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; two-component sensor kinase domain-containing protein 2357786 10104351 Alide_2295 Alicycliphilus denitrificans BC two-component sensor kinase domain-containing protein YP_004126918.1 2356398 D 596153 CDS YP_004126919.1 319762982 10104352 2357783..2358754 1 NC_014910.1 KEGG: pol:Bpro_1452 hypothetical protein; hypothetical protein 2358754 10104352 Alide_2296 Alicycliphilus denitrificans BC hypothetical protein YP_004126919.1 2357783 D 596153 CDS YP_004126920.1 319762983 10104353 complement(2358758..2359204) 1 NC_014910.1 PFAM: OsmC family protein; KEGG: pna:Pnap_2833 OsmC family protein; osmc family protein 2359204 10104353 Alide_2297 Alicycliphilus denitrificans BC osmc family protein YP_004126920.1 2358758 R 596153 CDS YP_004126921.1 319762984 10104354 complement(2359201..2359494) 1 NC_014910.1 KEGG: pna:Pnap_2832 rhodanese domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; rhodanese domain-containing protein 2359494 10104354 Alide_2298 Alicycliphilus denitrificans BC rhodanese domain-containing protein YP_004126921.1 2359201 R 596153 CDS YP_004126922.1 319762985 10104355 complement(2359592..2359801) 1 NC_014910.1 KEGG: pna:Pnap_2829 hypothetical protein; hypothetical protein 2359801 10104355 Alide_2299 Alicycliphilus denitrificans BC hypothetical protein YP_004126922.1 2359592 R 596153 CDS YP_004126923.1 319762986 10104356 complement(2359829..2360965) 1 NC_014910.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: alv:Alvin_1195 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fad-dependent pyridine nucleotide-disulfide oxidoreductase 2360965 10104356 Alide_2300 Alicycliphilus denitrificans BC fad-dependent pyridine nucleotide-disulfide oxidoreductase YP_004126923.1 2359829 R 596153 CDS YP_004126924.1 319762987 10104357 complement(2360962..2362254) 1 NC_014910.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pna:Pnap_2831 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fad-dependent pyridine nucleotide-disulfide oxidoreductase 2362254 10104357 Alide_2301 Alicycliphilus denitrificans BC fad-dependent pyridine nucleotide-disulfide oxidoreductase YP_004126924.1 2360962 R 596153 CDS YP_004126925.1 319762988 10104358 complement(2362297..2363718) 1 NC_014910.1 PFAM: outer membrane efflux protein; KEGG: pna:Pnap_2830 TolC family type I secretion outer membrane protein; outer membrane efflux protein 2363718 10104358 Alide_2302 Alicycliphilus denitrificans BC outer membrane efflux protein YP_004126925.1 2362297 R 596153 CDS YP_004126926.1 319762989 10104359 complement(2363715..2366948) 1 NC_014910.1 PFAM: acriflavin resistance protein; KEGG: pna:Pnap_2828 acriflavin resistance protein; acriflavin resistance protein 2366948 10104359 Alide_2303 Alicycliphilus denitrificans BC acriflavin resistance protein YP_004126926.1 2363715 R 596153 CDS YP_004126927.1 319762990 10104360 complement(2366950..2367990) 1 NC_014910.1 KEGG: pna:Pnap_2827 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 2367990 10104360 Alide_2304 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004126927.1 2366950 R 596153 CDS YP_004126928.1 319762991 10104361 2368090..2368428 1 NC_014910.1 KEGG: pna:Pnap_2826 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; regulatory protein arsr 2368428 10104361 Alide_2305 Alicycliphilus denitrificans BC regulatory protein arsr YP_004126928.1 2368090 D 596153 CDS YP_004126929.1 319762992 10104363 complement(2368830..2369615) 1 NC_014910.1 PFAM: HpcH/HpaI aldolase; KEGG: tjr:TherJR_2256 2-dehydro-3-deoxyglucarate aldolase; hpch/hpai aldolase 2369615 10104363 Alide_2307 Alicycliphilus denitrificans BC hpch/hpai aldolase YP_004126929.1 2368830 R 596153 CDS YP_004126930.1 319762993 10104364 complement(2369651..2370349) 1 NC_014910.1 KEGG: rpa:RPA2008 hypothetical protein; hypothetical protein 2370349 10104364 Alide_2308 Alicycliphilus denitrificans BC hypothetical protein YP_004126930.1 2369651 R 596153 CDS YP_004126931.1 319762994 10104365 complement(2370359..2371375) 1 NC_014910.1 KEGG: cti:RALTA_B0210 conserved hypothetical protein; periplasmic receptor protein, UPF0065; hypothetical protein 2371375 10104365 Alide_2309 Alicycliphilus denitrificans BC hypothetical protein YP_004126931.1 2370359 R 596153 CDS YP_004126932.1 319762995 10104366 complement(2371400..2372392) 1 NC_014910.1 KEGG: bpt:Bpet3225 secreted protein; secreted protein 2372392 10104366 Alide_2310 Alicycliphilus denitrificans BC secreted protein YP_004126932.1 2371400 R 596153 CDS YP_004126933.1 319762996 10104367 complement(2372407..2373447) 1 NC_014910.1 KEGG: bxe:Bxe_C0307 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; periplasmic-binding protein/LacI transcriptional regulator 2373447 10104367 Alide_2311 Alicycliphilus denitrificans BC periplasmic-binding protein/LacI transcriptional regulator YP_004126933.1 2372407 R 596153 CDS YP_004126934.1 319762997 10104368 complement(2373444..2374205) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bph:Bphy_7421 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 2374205 10104368 Alide_2312 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004126934.1 2373444 R 596153 CDS YP_004126935.1 319762998 10104369 complement(2374208..2375527) 1 NC_014910.1 TIGRFAM: histidinol dehydrogenase; KEGG: bxe:Bxe_C0309 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; histidinol dehydrogenase 2375527 10104369 Alide_2313 Alicycliphilus denitrificans BC histidinol dehydrogenase YP_004126935.1 2374208 R 596153 CDS YP_004126936.1 319762999 10104370 2375754..2376359 1 NC_014910.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2324 methyltransferase type 11; type 11 methyltransferase 2376359 10104370 Alide_2314 Alicycliphilus denitrificans BC type 11 methyltransferase YP_004126936.1 2375754 D 596153 CDS YP_004126937.1 319763000 10104371 2376370..2377038 1 NC_014910.1 PFAM: DTW domain containing protein; KEGG: dia:Dtpsy_1758 DTW domain containing protein; dtw domain-containing protein 2377038 10104371 Alide_2315 Alicycliphilus denitrificans BC dtw domain-containing protein YP_004126937.1 2376370 D 596153 CDS YP_004126938.1 319763001 10104372 2377055..2377636 1 NC_014910.1 KEGG: dia:Dtpsy_1757 uncharacterized peroxidase-related enzyme; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 2377636 10104372 Alide_2316 Alicycliphilus denitrificans BC peroxidase-like protein YP_004126938.1 2377055 D 596153 CDS YP_004126939.1 319763002 10104373 complement(2377701..2379437) 1 NC_014910.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ajs:Ajs_1955 sulfatase; sulfatase 2379437 10104373 Alide_2317 Alicycliphilus denitrificans BC sulfatase YP_004126939.1 2377701 R 596153 CDS YP_004126940.1 319763003 10104374 complement(2379442..2380170) 1 NC_014910.1 KEGG: dia:Dtpsy_1755 PAP2 (acid phosphatase) superfamily protein-like protein; pap2 (acid phosphatase) superfamily protein-like protein 2380170 10104374 Alide_2318 Alicycliphilus denitrificans BC pap2 (acid phosphatase) superfamily protein-like protein YP_004126940.1 2379442 R 596153 CDS YP_004126941.1 319763004 10104375 2380304..2380978 1 NC_014910.1 KEGG: dia:Dtpsy_1754 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 2380978 10104375 Alide_2319 Alicycliphilus denitrificans BC response regulator receiver YP_004126941.1 2380304 D 596153 CDS YP_004126942.1 319763005 10104376 2380982..2382349 1 NC_014910.1 KEGG: dia:Dtpsy_1753 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 2382349 10104376 Alide_2320 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004126942.1 2380982 D 596153 CDS YP_004126943.1 319763006 10104377 complement(2382365..2383135) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4306 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase 2383135 10104377 Alide_2321 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004126943.1 2382365 R 596153 CDS YP_004126944.1 319763007 10104378 complement(2383140..2384102) 1 NC_014910.1 KEGG: bbr:BB4305 hypothetical protein; hypothetical protein 2384102 10104378 Alide_2322 Alicycliphilus denitrificans BC hypothetical protein YP_004126944.1 2383140 R 596153 CDS YP_004126945.1 319763008 10104379 complement(2384144..2385151) 1 NC_014910.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbr:BB4304 zinc-binding dehydrogenase; alcohol dehydrogenase 2385151 10104379 Alide_2323 Alicycliphilus denitrificans BC alcohol dehydrogenase YP_004126945.1 2384144 R 596153 CDS YP_004126946.1 319763009 10104380 complement(2385151..2386368) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4303 racemase; l-carnitine dehydratase/bile acid-inducible protein f 2386368 10104380 Alide_2324 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004126946.1 2385151 R 596153 CDS YP_004126947.1 319763010 10104381 2386506..2387675 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB1199 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2387675 10104381 Alide_2325 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004126947.1 2386506 D 596153 CDS YP_004126948.1 319763011 10104382 2387692..2388747 1 NC_014910.1 KEGG: bbr:BB1197 hypothetical protein; hypothetical protein 2388747 10104382 Alide_2326 Alicycliphilus denitrificans BC hypothetical protein YP_004126948.1 2387692 D 596153 CDS YP_004126949.1 319763012 10104383 2388765..2389901 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: cti:RALTA_B0352 acyl-CoA transferases/carnitine dehydratase; l-carnitine dehydratase/bile acid-inducible protein f 2389901 10104383 Alide_2327 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004126949.1 2388765 D 596153 CDS YP_004126950.1 319763013 10104384 2390053..2390694 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: bbr:BB4302 TetR family transcriptional regulator; regulatory protein tetr 2390694 10104384 Alide_2328 Alicycliphilus denitrificans BC regulatory protein tetr YP_004126950.1 2390053 D 596153 CDS YP_004126951.1 319763014 10104385 2390844..2392559 1 NC_014910.1 KEGG: dia:Dtpsy_1751 electron-transferring-flavoprotein dehydrogenase; PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2392559 10104385 Alide_2329 Alicycliphilus denitrificans BC electron-transferring-flavoprotein dehydrogenase YP_004126951.1 2390844 D 596153 CDS YP_004126952.1 319763015 10104386 2392798..2393766 1 NC_014910.1 PFAM: protein of unknown function DUF534; KEGG: ajs:Ajs_1949 hypothetical protein; hypothetical protein 2393766 10104386 Alide_2330 Alicycliphilus denitrificans BC hypothetical protein YP_004126952.1 2392798 D 596153 CDS YP_004126953.1 319763016 10104387 2393848..2394735 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dac:Daci_4312 inner-membrane translocator; inner-membrane translocator 2394735 10104387 Alide_2331 Alicycliphilus denitrificans BC inner-membrane translocator YP_004126953.1 2393848 D 596153 CDS YP_004126954.1 319763017 10104388 2394748..2395542 1 NC_014910.1 KEGG: dia:Dtpsy_1748 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2395542 10104388 Alide_2332 Alicycliphilus denitrificans BC ABC transporter YP_004126954.1 2394748 D 596153 CDS YP_004126955.1 319763018 10104389 complement(2395717..2397642) 1 NC_014910.1 KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 2397642 10104389 Alide_2333 Alicycliphilus denitrificans BC sigma-54 factor interaction domain-containing protein YP_004126955.1 2395717 R 596153 CDS YP_004126956.1 319763019 10104390 complement(2397754..2398629) 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: vap:Vapar_5337 alpha/beta hydrolase fold protein; alpha/beta hydrolase 2398629 10104390 Alide_2334 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004126956.1 2397754 R 596153 CDS YP_004126957.1 319763020 10104391 complement(2398643..2400223) 1 NC_014910.1 KEGG: azo:azo3873 glucase dehydrogenase alpha subunit; PFAM: glucose-methanol-choline oxidoreductase; monooxygenase FAD-binding; gluconate 2-dehydrogenase (acceptor) 2400223 10104391 Alide_2335 Alicycliphilus denitrificans BC gluconate 2-dehydrogenase (acceptor) YP_004126957.1 2398643 R 596153 CDS YP_004126958.1 319763021 10104392 complement(2400256..2400837) 1 NC_014910.1 KEGG: azo:azo3872 hypothetical protein; hypothetical protein 2400837 10104392 Alide_2336 Alicycliphilus denitrificans BC hypothetical protein YP_004126958.1 2400256 R 596153 CDS YP_004126959.1 319763022 10104393 complement(2400894..2401607) 1 NC_014910.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: azo:azo3871 lipoate protein ligase; biotin/lipoate a/b protein ligase 2401607 10104393 Alide_2337 Alicycliphilus denitrificans BC biotin/lipoate a/b protein ligase YP_004126959.1 2400894 R 596153 CDS YP_004126960.1 319763023 10104394 complement(2401604..2402317) 1 NC_014910.1 KEGG: azo:azo3870 hypothetical protein; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; dihydrolipoyllysine-residue acetyltransferase 2402317 10104394 Alide_2338 Alicycliphilus denitrificans BC dihydrolipoyllysine-residue acetyltransferase YP_004126960.1 2401604 R 596153 CDS YP_004126961.1 319763024 10104395 complement(2402314..2402559) 1 NC_014910.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rfr:Rfer_3967 biotin/lipoyl attachment; biotin/lipoyl attachment domain-containing protein 2402559 10104395 Alide_2339 Alicycliphilus denitrificans BC biotin/lipoyl attachment domain-containing protein YP_004126961.1 2402314 R 596153 CDS YP_004126962.1 319763025 10104396 complement(2402556..2403593) 1 NC_014910.1 PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: rfr:Rfer_3966 transketolase; transketolase central region protein 2403593 10104396 Alide_2340 Alicycliphilus denitrificans BC transketolase central region protein YP_004126962.1 2402556 R 596153 CDS YP_004126963.1 319763026 10104397 complement(2403619..2404626) 1 NC_014910.1 KEGG: azo:azo3867 acetoin dehydrogenase, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) 2404626 10104397 Alide_2341 Alicycliphilus denitrificans BC pyruvate dehydrogenase (acetyl-transferring) YP_004126963.1 2403619 R 596153 CDS YP_004126964.1 319763027 10104398 complement(2404962..2405423) 1 NC_014910.1 KEGG: dia:Dtpsy_1745 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein 2405423 10104398 Alide_2342 Alicycliphilus denitrificans BC transcription regulator asnc-type-like protein YP_004126964.1 2404962 R 596153 CDS YP_004126965.1 319763028 10104399 2405709..2406680 1 NC_014910.1 KEGG: ajs:Ajs_1941 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; trap dicarboxylate transporter subunit DctP 2406680 10104399 Alide_2343 Alicycliphilus denitrificans BC trap dicarboxylate transporter subunit DctP YP_004126965.1 2405709 D 596153 CDS YP_004126966.1 319763029 10104400 2406756..2407250 1 NC_014910.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dia:Dtpsy_1743 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter dctq component 2407250 10104400 Alide_2344 Alicycliphilus denitrificans BC tripartite ATP-independent periplasmic transporter dctq component YP_004126966.1 2406756 D 596153 CDS YP_004126967.1 319763030 10104401 2407247..2408524 1 NC_014910.1 KEGG: dia:Dtpsy_1742 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM 2408524 10104401 Alide_2345 Alicycliphilus denitrificans BC trap dicarboxylate transporter subunit DctM YP_004126967.1 2407247 D 596153 CDS YP_004126968.1 319763031 10104402 complement(2408543..2409610) 1 NC_014910.1 KEGG: bpt:Bpet1117 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2409610 10104402 Alide_2346 Alicycliphilus denitrificans BC metallo-beta-lactamase family protein YP_004126968.1 2408543 R 596153 CDS YP_004126969.1 319763032 10104403 2409941..2411074 1 NC_014910.1 KEGG: aav:Aave_3145 glycine cleavage system T protein; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; glycine cleavage system t protein 2411074 10104403 Alide_2347 Alicycliphilus denitrificans BC glycine cleavage system t protein YP_004126969.1 2409941 D 596153 CDS YP_004126970.1 319763033 10104404 2411161..2411535 1 NC_014910.1 KEGG: dia:Dtpsy_1740 glycine cleavage system H protein; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; glycine cleavage system h protein 2411535 10104404 Alide_2348 Alicycliphilus denitrificans BC glycine cleavage system h protein YP_004126970.1 2411161 D 596153 CDS YP_004126971.1 319763034 10104405 2411665..2414553 1 NC_014910.1 KEGG: dia:Dtpsy_1739 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: Glycine cleavage system P-protein-like; glycine dehydrogenase 2414553 10104405 Alide_2349 Alicycliphilus denitrificans BC glycine dehydrogenase YP_004126971.1 2411665 D 596153 CDS YP_004126972.1 319763035 10104406 2414712..2414972 1 NC_014910.1 PFAM: protein of unknown function DUF156; KEGG: ajs:Ajs_2799 hypothetical protein; hypothetical protein 2414972 10104406 Alide_2350 Alicycliphilus denitrificans BC hypothetical protein YP_004126972.1 2414712 D 596153 CDS YP_004126973.1 319763036 10104407 2414996..2416111 1 NC_014910.1 KEGG: dia:Dtpsy_2290 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase 2416111 10104407 Alide_2351 Alicycliphilus denitrificans BC s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase YP_004126973.1 2414996 D 596153 CDS YP_004126974.1 319763037 10104408 2416221..2417081 1 NC_014910.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: ajs:Ajs_2801 carboxylesterase; PFAM: esterase; s-formylglutathione hydrolase 2417081 10104408 Alide_2352 Alicycliphilus denitrificans BC s-formylglutathione hydrolase YP_004126974.1 2416221 D 596153 CDS YP_004126975.1 319763038 10104409 complement(2417092..2417271) 1 NC_014910.1 hypothetical protein 2417271 10104409 Alide_2353 Alicycliphilus denitrificans BC hypothetical protein YP_004126975.1 2417092 R 596153 CDS YP_004126976.1 319763039 10104410 2417345..2418232 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_2228 transcriptional regulator, LysR family; LysR family transcriptional regulator 2418232 10104410 Alide_2354 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126976.1 2417345 D 596153 CDS YP_004126977.1 319763040 10104411 complement(2418229..2419347) 1 NC_014910.1 PFAM: Radical SAM domain protein; KEGG: ajs:Ajs_2803 radical SAM domain-containing protein; radical SAM domain-containing protein 2419347 10104411 Alide_2355 Alicycliphilus denitrificans BC radical SAM domain-containing protein YP_004126977.1 2418229 R 596153 CDS YP_004126978.1 319763041 10104412 2419615..2420022 1 NC_014910.1 PFAM: transcription elongation factor GreA/GreB domain-containing protein; KEGG: ajs:Ajs_2805 GreA/GreB family elongation factor; transcription elongation factor GreA/GreB domain-containing protein 2420022 10104412 Alide_2356 Alicycliphilus denitrificans BC transcription elongation factor GreA/GreB domain-containing protein YP_004126978.1 2419615 D 596153 CDS YP_004126979.1 319763042 10104413 complement(2420069..2421226) 1 NC_014910.1 PFAM: acyltransferase 3; KEGG: dia:Dtpsy_2295 acyltransferase 3; acyltransferase 2421226 10104413 Alide_2357 Alicycliphilus denitrificans BC acyltransferase YP_004126979.1 2420069 R 596153 CDS YP_004126980.1 319763043 10104414 complement(2421293..2422249) 1 NC_014910.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 2422249 10104414 Alide_2358 Alicycliphilus denitrificans BC 2-nitropropane dioxygenase YP_004126980.1 2421293 R 596153 CDS YP_004126981.1 319763044 10104415 complement(2422328..2424118) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dia:Dtpsy_2297 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 2424118 10104415 Alide_2359 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004126981.1 2422328 R 596153 CDS YP_004126982.1 319763045 10104416 complement(2424202..2425134) 1 NC_014910.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha 2425134 10104416 Alide_2360 Alicycliphilus denitrificans BC electron transfer flavoprotein subunit alpha YP_004126982.1 2424202 R 596153 CDS YP_004126983.1 319763046 10104417 complement(2425152..2425901) 1 NC_014910.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunits alpha/beta 2425901 10104417 Alide_2361 Alicycliphilus denitrificans BC electron transfer flavoprotein subunits alpha/beta YP_004126983.1 2425152 R 596153 CDS YP_004126984.1 319763047 10104418 complement(2426073..2426852) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_2301 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 2426852 10104418 Alide_2362 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004126984.1 2426073 R 596153 CDS YP_004126985.1 319763048 10104419 complement(2426867..2427826) 1 NC_014910.1 PFAM: histone deacetylase superfamily; KEGG: ajs:Ajs_2813 histone deacetylase superfamily protein; histone deacetylase superfamily protein 2427826 10104419 Alide_2363 Alicycliphilus denitrificans BC histone deacetylase superfamily protein YP_004126985.1 2426867 R 596153 CDS YP_004126986.1 319763049 10104420 2427865..2428785 1 NC_014910.1 KEGG: dia:Dtpsy_2303 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; ATPase AAA 2428785 10104420 Alide_2364 Alicycliphilus denitrificans BC ATPase AAA YP_004126986.1 2427865 D 596153 CDS YP_004126987.1 319763050 10104421 2428791..2429810 1 NC_014910.1 PFAM: protein of unknown function DUF58; KEGG: ajs:Ajs_2815 hypothetical protein; hypothetical protein 2429810 10104421 Alide_2365 Alicycliphilus denitrificans BC hypothetical protein YP_004126987.1 2428791 D 596153 CDS YP_004126988.1 319763051 10104422 2429890..2431947 1 NC_014910.1 KEGG: ajs:Ajs_2816 transglutaminase domain-containing protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein; transglutaminase domain-containing protein 2431947 10104422 Alide_2366 Alicycliphilus denitrificans BC transglutaminase domain-containing protein YP_004126988.1 2429890 D 596153 CDS YP_004126989.1 319763052 10104423 2431944..2433014 1 NC_014910.1 TIGRFAM: lytic murein transglycosylase B; KEGG: dia:Dtpsy_2306 lytic murein transglycosylase B; lytic murein transglycosylase b 2433014 10104423 Alide_2367 Alicycliphilus denitrificans BC lytic murein transglycosylase b YP_004126989.1 2431944 D 596153 CDS YP_004126990.1 319763053 10104424 complement(2433024..2434028) 1 NC_014910.1 PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: lch:Lcho_4275 transketolase central region; transketolase central region protein 2434028 10104424 Alide_2368 Alicycliphilus denitrificans BC transketolase central region protein YP_004126990.1 2433024 R 596153 CDS YP_004126991.1 319763054 10104425 complement(2434043..2434870) 1 NC_014910.1 PFAM: Transketolase domain-containing protein; KEGG: dac:Daci_0728 transketolase domain-containing protein; transketolase domain-containing protein 2434870 10104425 Alide_2369 Alicycliphilus denitrificans BC transketolase domain-containing protein YP_004126991.1 2434043 R 596153 CDS YP_004126992.1 319763055 10104426 complement(2434893..2436152) 1 NC_014910.1 KEGG: pol:Bpro_1457 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM 2436152 10104426 Alide_2370 Alicycliphilus denitrificans BC trap dicarboxylate transporter subunit DctM YP_004126992.1 2434893 R 596153 CDS YP_004126993.1 319763056 10104427 complement(2436149..2436649) 1 NC_014910.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: lch:Lcho_0406 tripartite ATP-independent periplasmic transporter DctQ; tripartite ATP-independent periplasmic transporter dctq component 2436649 10104427 Alide_2371 Alicycliphilus denitrificans BC tripartite ATP-independent periplasmic transporter dctq component YP_004126993.1 2436149 R 596153 CDS YP_004126994.1 319763057 10104428 complement(2436704..2437687) 1 NC_014910.1 KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; trap dicarboxylate transporter subunit DctP 2437687 10104428 Alide_2372 Alicycliphilus denitrificans BC trap dicarboxylate transporter subunit DctP YP_004126994.1 2436704 R 596153 CDS YP_004126995.1 319763058 10104429 complement(2437724..2438473) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lch:Lcho_0404 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 2438473 10104429 Alide_2373 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004126995.1 2437724 R 596153 CDS YP_004126996.1 319763059 10104430 2438614..2439492 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_1453 LysR family transcriptional regulator; LysR family transcriptional regulator 2439492 10104430 Alide_2374 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126996.1 2438614 D 596153 CDS YP_004126997.1 319763060 10104431 2439645..2441627 1 NC_014910.1 KEGG: hse:Hsero_0506 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; transketolase 2441627 10104431 Alide_2375 Alicycliphilus denitrificans BC transketolase YP_004126997.1 2439645 D 596153 CDS YP_004126998.1 319763061 10104432 2441642..2442604 1 NC_014910.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: bxe:Bxe_B0983 2-hydroxyacid dehydrogenase; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 2442604 10104432 Alide_2376 Alicycliphilus denitrificans BC d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein YP_004126998.1 2441642 D 596153 CDS YP_004126999.1 319763062 10104433 complement(2442624..2443538) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_2307 transcriptional regulator, LysR family; LysR family transcriptional regulator 2443538 10104433 Alide_2377 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004126999.1 2442624 R 596153 CDS YP_004127000.1 319763063 10104434 2443653..2444759 1 NC_014910.1 PFAM: Uncharacterised protein family UPF0324; KEGG: dia:Dtpsy_2308 hypothetical protein; hypothetical protein 2444759 10104434 Alide_2378 Alicycliphilus denitrificans BC hypothetical protein YP_004127000.1 2443653 D 596153 CDS YP_004127001.1 319763064 10104435 complement(2444761..2446038) 1 NC_014910.1 KEGG: dia:Dtpsy_2309 transporter signal peptide protein; branched-chain amino acid ABC transporter substrate-binding protein 2446038 10104435 Alide_2379 Alicycliphilus denitrificans BC branched-chain amino acid ABC transporter substrate-binding protein YP_004127001.1 2444761 R 596153 CDS YP_004127002.1 319763065 10104436 complement(2446071..2446850) 1 NC_014910.1 PFAM: Protein of unknown function DUF2242; KEGG: dia:Dtpsy_2310 lipoprotein; hypothetical protein 2446850 10104436 Alide_2380 Alicycliphilus denitrificans BC hypothetical protein YP_004127002.1 2446071 R 596153 CDS YP_004127003.1 319763066 10104437 complement(2446996..2448207) 1 NC_014910.1 PFAM: protein of unknown function DUF214; KEGG: dia:Dtpsy_2312 protein of unknown function DUF214; hypothetical protein 2448207 10104437 Alide_2381 Alicycliphilus denitrificans BC hypothetical protein YP_004127003.1 2446996 R 596153 CDS YP_004127004.1 319763067 10104438 complement(2448204..2448959) 1 NC_014910.1 KEGG: dia:Dtpsy_2313 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2448959 10104438 Alide_2382 Alicycliphilus denitrificans BC ABC transporter YP_004127004.1 2448204 R 596153 CDS YP_004127005.1 319763068 10104439 complement(2448956..2450305) 1 NC_014910.1 KEGG: dia:Dtpsy_2314 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 2450305 10104439 Alide_2383 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004127005.1 2448956 R 596153 CDS YP_004127006.1 319763069 10104440 complement(2450302..2451708) 1 NC_014910.1 KEGG: dia:Dtpsy_2315 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family 2451708 10104440 Alide_2384 Alicycliphilus denitrificans BC rnd efflux system, outer membrane lipoprotein, nodt family YP_004127006.1 2450302 R 596153 CDS YP_004127007.1 319763070 10104441 complement(2451831..2452874) 1 NC_014910.1 TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: dia:Dtpsy_2317 DNA-binding/iron metalloprotein/AP endonuclease; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 2452874 10104441 Alide_2385 Alicycliphilus denitrificans BC glycoprotease family metalloendopeptidase YP_004127007.1 2451831 R 596153 CDS YP_004127008.1 319763071 10104442 complement(2452897..2453334) 1 NC_014910.1 KEGG: dia:Dtpsy_2323 signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; CBS domain-containing protein 2453334 10104442 Alide_2386 Alicycliphilus denitrificans BC CBS domain-containing protein YP_004127008.1 2452897 R 596153 CDS YP_004127009.1 319763072 10104443 complement(2453419..2454060) 1 NC_014910.1 KEGG: dia:Dtpsy_2324 calcium-binding EF-hand-containing protein; calcium-binding ef-hand-containing protein 2454060 10104443 Alide_2387 Alicycliphilus denitrificans BC calcium-binding ef-hand-containing protein YP_004127009.1 2453419 R 596153 CDS YP_004127010.1 319763073 10104444 2454463..2455701 1 NC_014910.1 KEGG: aav:Aave_2112 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 2455701 10104444 Alide_2388 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004127010.1 2454463 D 596153 CDS YP_004127011.1 319763074 10104445 2455711..2458854 1 NC_014910.1 KEGG: dia:Dtpsy_2326 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 family transporter 2458854 10104445 Alide_2389 Alicycliphilus denitrificans BC hydrophobe/amphiphile efflux-1 family transporter YP_004127011.1 2455711 D 596153 CDS YP_004127012.1 319763075 10104446 2458851..2460359 1 NC_014910.1 KEGG: dia:Dtpsy_2327 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family 2460359 10104446 Alide_2390 Alicycliphilus denitrificans BC rnd efflux system, outer membrane lipoprotein, nodt family YP_004127012.1 2458851 D 596153 CDS YP_004127013.1 319763076 10104447 2460613..2463063 1 NC_014910.1 KEGG: ajs:Ajs_2839 assimilatory nitrite reductase (NAD(P)H) large subunit precursor; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite reductase (nad(p)h), large subunit 2463063 10104447 Alide_2391 Alicycliphilus denitrificans BC nitrite reductase (nad(p)h), large subunit YP_004127013.1 2460613 D 596153 CDS YP_004127014.1 319763077 10104448 2463136..2463513 1 NC_014910.1 KEGG: ajs:Ajs_2840 assimilatory nitrite reductase (NAD(P)H) small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; nitrite reductase (nad(p)h), small subunit 2463513 10104448 Alide_2392 Alicycliphilus denitrificans BC nitrite reductase (nad(p)h), small subunit YP_004127014.1 2463136 D 596153 CDS YP_004127015.1 319763078 10104449 2463510..2466302 1 NC_014910.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ajs:Ajs_2841 assimilatory nitrate reductase (NADH) alpha subunit apoprotein; molybdopterin oxidoreductase 2466302 10104449 Alide_2393 Alicycliphilus denitrificans BC molybdopterin oxidoreductase YP_004127015.1 2463510 D 596153 CDS YP_004127016.1 319763079 10104450 2466353..2467576 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3273 major facilitator transporter; major facilitator superfamily protein 2467576 10104450 Alide_2394 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004127016.1 2466353 D 596153 CDS YP_004127017.1 319763080 10104451 complement(2467615..2468190) 1 NC_014910.1 PFAM: SNARE associated Golgi protein; KEGG: net:Neut_2429 hypothetical protein; hypothetical protein 2468190 10104451 Alide_2395 Alicycliphilus denitrificans BC hypothetical protein YP_004127017.1 2467615 R 596153 CDS YP_004127018.1 319763081 10104452 2468326..2469294 1 NC_014910.1 PFAM: Glycosyl transferase, family 3-like; KEGG: ajs:Ajs_2842 glycosyl transferase family protein; glycosyl transferase, family 3-like protein 2469294 10104452 Alide_2396 Alicycliphilus denitrificans BC glycosyl transferase, family 3-like protein YP_004127018.1 2468326 D 596153 CDS YP_004127019.1 319763082 10104453 2469291..2470061 1 NC_014910.1 KEGG: dia:Dtpsy_2332 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C-methyltransferase 2470061 10104453 Alide_2397 Alicycliphilus denitrificans BC uroporphyrin-III C-methyltransferase YP_004127019.1 2469291 D 596153 CDS YP_004127020.1 319763083 10104454 complement(2470062..2470565) 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_2333 thioesterase superfamily protein; thioesterase superfamily protein 2470565 10104454 Alide_2398 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004127020.1 2470062 R 596153 CDS YP_004127021.1 319763084 10104455 2470606..2471880 1 NC_014910.1 PFAM: HI0933 family protein; KEGG: dia:Dtpsy_2335 HI0933 family protein; hi0933 family protein 2471880 10104455 Alide_2399 Alicycliphilus denitrificans BC hi0933 family protein YP_004127021.1 2470606 D 596153 CDS YP_004127022.1 319763085 10104456 2471991..2473205 1 NC_014910.1 PFAM: NnrS family protein; KEGG: ajs:Ajs_2847 NnrS family protein; nnrs family protein 2473205 10104456 Alide_2400 Alicycliphilus denitrificans BC nnrs family protein YP_004127022.1 2471991 D 596153 CDS YP_004127023.1 319763086 10104457 2473248..2473532 1 NC_014910.1 KEGG: dia:Dtpsy_2337 hypothetical protein; hypothetical protein 2473532 10104457 Alide_2401 Alicycliphilus denitrificans BC hypothetical protein YP_004127023.1 2473248 D 596153 CDS YP_004127024.1 319763087 10104458 complement(2473602..2474588) 1 NC_014910.1 KEGG: reu:Reut_A1607 hypothetical protein; hypothetical protein 2474588 10104458 Alide_2402 Alicycliphilus denitrificans BC hypothetical protein YP_004127024.1 2473602 R 596153 CDS YP_004127025.1 319763088 10104459 complement(2474682..2476184) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_C0851 acyl-CoA synthetase; AMP-dependent synthetase/ligase 2476184 10104459 Alide_2403 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004127025.1 2474682 R 596153 CDS YP_004127026.1 319763089 10104460 complement(2476238..2477410) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bxe:Bxe_C0852 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2477410 10104460 Alide_2404 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127026.1 2476238 R 596153 CDS YP_004127027.1 319763090 10104461 complement(2477477..2478451) 1 NC_014910.1 KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein 2478451 10104461 Alide_2405 Alicycliphilus denitrificans BC hypothetical protein YP_004127027.1 2477477 R 596153 CDS YP_004127028.1 319763091 10104462 complement(2478529..2479932) 1 NC_014910.1 KEGG: bxe:Bxe_C0853 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 2479932 10104462 Alide_2406 Alicycliphilus denitrificans BC dihydrolipoamide dehydrogenase YP_004127028.1 2478529 R 596153 CDS YP_004127029.1 319763092 10104463 complement(2479943..2481151) 1 NC_014910.1 KEGG: bxe:Bxe_C0854 dihydrolipoamide acyltransferase (E2) component of 2-oxoacid dehydrogenase complexes; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; E3 binding domain protein; biotin/lipoyl attachment domain-containing protein; dihydrolipoyllysine-residue acetyltransferase 2481151 10104463 Alide_2407 Alicycliphilus denitrificans BC dihydrolipoyllysine-residue acetyltransferase YP_004127029.1 2479943 R 596153 CDS YP_004127030.1 319763093 10104464 complement(2481155..2481946) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_C0855 short chain enoyl-CoA hydratase; enoyl-CoA hydratase 2481946 10104464 Alide_2408 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004127030.1 2481155 R 596153 CDS YP_004127031.1 319763094 10104465 complement(2481972..2482952) 1 NC_014910.1 PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: bxe:Bxe_C0856 2-oxo acid dehydrogenase beta subunit; transketolase central region protein 2482952 10104465 Alide_2409 Alicycliphilus denitrificans BC transketolase central region protein YP_004127031.1 2481972 R 596153 CDS YP_004127032.1 319763095 10104466 complement(2482949..2483950) 1 NC_014910.1 KEGG: bxe:Bxe_C0857 2-oxo acid dehydrogenase alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) 2483950 10104466 Alide_2410 Alicycliphilus denitrificans BC pyruvate dehydrogenase (acetyl-transferring) YP_004127032.1 2482949 R 596153 CDS YP_004127033.1 319763096 10104467 complement(2484005..2484403) 1 NC_014910.1 PFAM: MaoC domain protein dehydratase; KEGG: bxe:Bxe_C0858 dehydratase; MaoC domain-containing protein 2484403 10104467 Alide_2411 Alicycliphilus denitrificans BC MaoC domain-containing protein YP_004127033.1 2484005 R 596153 CDS YP_004127034.1 319763097 10104468 complement(2484400..2484807) 1 NC_014910.1 KEGG: bbr:BB4714 hypothetical protein; hypothetical protein 2484807 10104468 Alide_2412 Alicycliphilus denitrificans BC hypothetical protein YP_004127034.1 2484400 R 596153 CDS YP_004127035.1 319763098 10104469 complement(2484804..2485223) 1 NC_014910.1 PFAM: protein of unknown function DUF35; KEGG: bxe:Bxe_C0859 hypothetical protein; hypothetical protein 2485223 10104469 Alide_2413 Alicycliphilus denitrificans BC hypothetical protein YP_004127035.1 2484804 R 596153 CDS YP_004127036.1 319763099 10104470 complement(2485225..2486376) 1 NC_014910.1 KEGG: bbr:BB4712 hypothetical protein; hypothetical protein 2486376 10104470 Alide_2414 Alicycliphilus denitrificans BC hypothetical protein YP_004127036.1 2485225 R 596153 CDS YP_004127037.1 319763100 10104471 complement(2486387..2487535) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB4710 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2487535 10104471 Alide_2415 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127037.1 2486387 R 596153 CDS YP_004127038.1 319763101 10104472 2487676..2489787 1 NC_014910.1 PFAM: CoA-binding domain protein; KEGG: bbr:BB4708 pimeloyl-CoA synthetase; CoA-binding protein 2489787 10104472 Alide_2416 Alicycliphilus denitrificans BC CoA-binding protein YP_004127038.1 2487676 D 596153 CDS YP_004127039.1 319763102 10104473 2489933..2490727 1 NC_014910.1 KEGG: bxe:Bxe_C0866 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 2490727 10104473 Alide_2417 Alicycliphilus denitrificans BC regulatory protein iclr YP_004127039.1 2489933 D 596153 CDS YP_004127040.1 319763103 10104474 complement(2490782..2491336) 1 NC_014910.1 KEGG: dia:Dtpsy_2338 FeS assembly SUF system protein SufT; TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59; fes assembly suf system protein suft 2491336 10104474 Alide_2418 Alicycliphilus denitrificans BC fes assembly suf system protein suft YP_004127040.1 2490782 R 596153 CDS YP_004127041.1 319763104 10104475 complement(2491333..2491797) 1 NC_014910.1 KEGG: dia:Dtpsy_2339 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; suf system fes assembly protein, nifu family 2491797 10104475 Alide_2419 Alicycliphilus denitrificans BC suf system fes assembly protein, nifu family YP_004127041.1 2491333 R 596153 CDS YP_004127042.1 319763105 10104476 complement(2491794..2493074) 1 NC_014910.1 KEGG: ajs:Ajs_2851 aminotransferase, class V; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; cysteine desulfurase, sufs subfamily 2493074 10104476 Alide_2420 Alicycliphilus denitrificans BC cysteine desulfurase, sufs subfamily YP_004127042.1 2491794 R 596153 CDS YP_004127043.1 319763106 10104477 complement(2493067..2494302) 1 NC_014910.1 PFAM: SufBD protein; KEGG: ajs:Ajs_2852 SufBD protein; sufbd protein 2494302 10104477 Alide_2421 Alicycliphilus denitrificans BC sufbd protein YP_004127043.1 2493067 R 596153 CDS YP_004127044.1 319763107 10104478 complement(2494307..2495080) 1 NC_014910.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: dia:Dtpsy_2342 FeS assembly ATPase SufC; SMART: AAA ATPase; fes assembly atpase sufc 2495080 10104478 Alide_2422 Alicycliphilus denitrificans BC fes assembly atpase sufc YP_004127044.1 2494307 R 596153 CDS YP_004127045.1 319763108 10104479 complement(2495151..2496653) 1 NC_014910.1 KEGG: dia:Dtpsy_2343 cysteine desulfurase activator complex subunit SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; fes assembly protein sufb 2496653 10104479 Alide_2423 Alicycliphilus denitrificans BC fes assembly protein sufb YP_004127045.1 2495151 R 596153 CDS YP_004127046.1 319763109 10104480 2496932..2497144 1 NC_014910.1 KEGG: vap:Vapar_3540 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; 30S ribosomal protein S21 2497144 10104480 Alide_2424 Alicycliphilus denitrificans BC 30S ribosomal protein S21 YP_004127046.1 2496932 D 596153 CDS YP_004127047.1 319763110 10104481 2497230..2497676 1 NC_014910.1 KEGG: aav:Aave_2091 GatB/YqeY domain-containing protein; gatb/yqey domain-containing protein 2497676 10104481 Alide_2425 Alicycliphilus denitrificans BC gatb/yqey domain-containing protein YP_004127047.1 2497230 D 596153 CDS YP_004127048.1 319763111 10104482 complement(2497690..2499081) 1 NC_014910.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ajs:Ajs_1963 metal dependent phosphohydrolase; metal-dependent phosphohydrolase 2499081 10104482 Alide_2426 Alicycliphilus denitrificans BC metal-dependent phosphohydrolase YP_004127048.1 2497690 R 596153 CDS YP_004127049.1 319763112 10104483 complement(2499232..2499870) 1 NC_014910.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: dia:Dtpsy_1763 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2499870 10104483 Alide_2427 Alicycliphilus denitrificans BC 3-oxoacid CoA-transferase subunit B YP_004127049.1 2499232 R 596153 CDS YP_004127050.1 319763113 10104484 complement(2499874..2500581) 1 NC_014910.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: pna:Pnap_2658 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2500581 10104484 Alide_2428 Alicycliphilus denitrificans BC 3-oxoacid CoA-transferase subunit A YP_004127050.1 2499874 R 596153 CDS YP_004127051.1 319763114 10104485 2500665..2501210 1 NC_014910.1 TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold domain protein; KEGG: dia:Dtpsy_1761 transcriptional regulator, LuxR family; SMART: regulatory protein LuxR; PAS domain containing protein; pas sensor protein 2501210 10104485 Alide_2429 Alicycliphilus denitrificans BC pas sensor protein YP_004127051.1 2500665 D 596153 CDS YP_004127052.1 319763115 10104486 2501348..2502589 1 NC_014910.1 PFAM: acyltransferase 3; KEGG: ajs:Ajs_2326 acyltransferase 3; acyltransferase 2502589 10104486 Alide_2430 Alicycliphilus denitrificans BC acyltransferase YP_004127052.1 2501348 D 596153 CDS YP_004127053.1 319763116 10104487 2502816..2504162 1 NC_014910.1 KEGG: ajs:Ajs_2327 N-acetylglutamate synthase; TIGRFAM: amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; aspartate/glutamate/uridylate kinase; amino-acid n-acetyltransferase 2504162 10104487 Alide_2431 Alicycliphilus denitrificans BC amino-acid n-acetyltransferase YP_004127053.1 2502816 D 596153 CDS YP_004127054.1 319763117 10104488 2504640..2504987 1 NC_014910.1 PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_3393 endoribonuclease L-PSP; endoribonuclease L-PSP 2504987 10104488 Alide_2432 Alicycliphilus denitrificans BC endoribonuclease L-PSP YP_004127054.1 2504640 D 596153 CDS YP_004127055.1 319763118 10104489 2505014..2506258 1 NC_014910.1 KEGG: bam:Bamb_3394 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase 2506258 10104489 Alide_2433 Alicycliphilus denitrificans BC D-amino-acid dehydrogenase YP_004127055.1 2505014 D 596153 CDS YP_004127056.1 319763119 10104490 2506255..2507031 1 NC_014910.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: vei:Veis_4472 Asp/Glu racemase; asp/glu/hydantoin racemase 2507031 10104490 Alide_2434 Alicycliphilus denitrificans BC asp/glu/hydantoin racemase YP_004127056.1 2506255 D 596153 CDS YP_004127057.1 319763120 10104491 2507093..2508226 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_4471 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 2508226 10104491 Alide_2435 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127057.1 2507093 D 596153 CDS YP_004127058.1 319763121 10104492 2508282..2509175 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: vei:Veis_4470 inner-membrane translocator; inner-membrane translocator 2509175 10104492 Alide_2436 Alicycliphilus denitrificans BC inner-membrane translocator YP_004127058.1 2508282 D 596153 CDS YP_004127059.1 319763122 10104493 2509168..2510055 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: vei:Veis_4469 inner-membrane translocator; inner-membrane translocator 2510055 10104493 Alide_2437 Alicycliphilus denitrificans BC inner-membrane translocator YP_004127059.1 2509168 D 596153 CDS YP_004127060.1 319763123 10104494 2510052..2510834 1 NC_014910.1 KEGG: vei:Veis_4468 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2510834 10104494 Alide_2438 Alicycliphilus denitrificans BC ABC transporter YP_004127060.1 2510052 D 596153 CDS YP_004127061.1 319763124 10104495 2510834..2511553 1 NC_014910.1 KEGG: vei:Veis_4467 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2511553 10104495 Alide_2439 Alicycliphilus denitrificans BC ABC transporter YP_004127061.1 2510834 D 596153 CDS YP_004127062.1 319763125 10104496 2511577..2512698 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: bcm:Bcenmc03_6241 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 2512698 10104496 Alide_2440 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127062.1 2511577 D 596153 CDS YP_004127063.1 319763126 10104497 complement(2512763..2513671) 1 NC_014910.1 KEGG: tbd:Tbd_1098 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 2513671 10104497 Alide_2441 Alicycliphilus denitrificans BC dihydrodipicolinate synthase YP_004127063.1 2512763 R 596153 CDS YP_004127064.1 319763127 10104498 complement(2513790..2517236) 1 NC_014910.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: xau:Xaut_0390 indolepyruvate ferredoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase, catalytic domain-containing protein 2517236 10104498 Alide_2442 Alicycliphilus denitrificans BC pyruvate/ketoisovalerate oxidoreductase, catalytic domain-containing protein YP_004127064.1 2513790 R 596153 CDS YP_004127065.1 319763128 10104499 2517453..2518235 1 NC_014910.1 KEGG: vei:Veis_4063 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2518235 10104499 Alide_2443 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004127065.1 2517453 D 596153 CDS YP_004127066.1 319763129 10104500 complement(2518263..2519888) 1 NC_014910.1 KEGG: dar:Daro_3357 hypothetical protein; PFAM: GAF domain protein; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region; GAF domain-containing protein 2519888 10104500 Alide_2444 Alicycliphilus denitrificans BC GAF domain-containing protein YP_004127066.1 2518263 R 596153 CDS YP_004127067.1 319763130 10104501 complement(2520004..2520513) 1 NC_014910.1 PFAM: Disulphide bond formation protein DsbB; KEGG: dia:Dtpsy_1523 disulphide bond formation protein DsbB; disulfide bond formation protein dsbb 2520513 10104501 Alide_2445 Alicycliphilus denitrificans BC disulfide bond formation protein dsbb YP_004127067.1 2520004 R 596153 CDS YP_004127068.1 319763131 10104502 complement(2520575..2521702) 1 NC_014910.1 TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dia:Dtpsy_1522 sulfate ABC transporter, ATPase subunit; SMART: AAA ATPase; sulfate ABC transporter ATPase subunit 2521702 10104502 Alide_2446 Alicycliphilus denitrificans BC sulfate ABC transporter ATPase subunit YP_004127068.1 2520575 R 596153 CDS YP_004127069.1 319763132 10104503 complement(2521737..2522630) 1 NC_014910.1 KEGG: ajs:Ajs_2336 sulfate ABC transporter, inner membrane subunit CysW; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter membrane protein CysW 2522630 10104503 Alide_2447 Alicycliphilus denitrificans BC sulfate ABC transporter membrane protein CysW YP_004127069.1 2521737 R 596153 CDS YP_004127070.1 319763133 10104504 complement(2522627..2523493) 1 NC_014910.1 KEGG: dia:Dtpsy_1520 sulfate ABC transporter, inner membrane subunit CysT; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease protein CysT 2523493 10104504 Alide_2448 Alicycliphilus denitrificans BC sulfate ABC transporter permease protein CysT YP_004127070.1 2522627 R 596153 CDS YP_004127071.1 319763134 10104505 complement(2523498..2524499) 1 NC_014910.1 KEGG: dia:Dtpsy_1519 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; sulfate ABC transporter periplasmic sulfate-binding protein 2524499 10104505 Alide_2449 Alicycliphilus denitrificans BC sulfate ABC transporter periplasmic sulfate-binding protein YP_004127071.1 2523498 R 596153 CDS YP_004127072.1 319763135 10104506 complement(2524608..2525198) 1 NC_014910.1 PFAM: protein of unknown function DUF1234; KEGG: aav:Aave_2544 hypothetical protein; hypothetical protein 2525198 10104506 Alide_2450 Alicycliphilus denitrificans BC hypothetical protein YP_004127072.1 2524608 R 596153 CDS YP_004127073.1 319763136 10104507 complement(2525286..2526203) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1518 transcriptional regulator, LysR family; LysR family transcriptional regulator 2526203 10104507 Alide_2451 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127073.1 2525286 R 596153 CDS YP_004127074.1 319763137 10104508 2526331..2526981 1 NC_014910.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: dia:Dtpsy_1517 NAD(P)H dehydrogenase (quinone); nad(p)h dehydrogenase (quinone) 2526981 10104508 Alide_2452 Alicycliphilus denitrificans BC nad(p)h dehydrogenase (quinone) YP_004127074.1 2526331 D 596153 CDS YP_004127075.1 319763138 10104509 complement(2527039..2527635) 1 NC_014910.1 PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_1516 NADPH-dependent FMN reductase; nadph-dependent fmn reductase 2527635 10104509 Alide_2453 Alicycliphilus denitrificans BC nadph-dependent fmn reductase YP_004127075.1 2527039 R 596153 CDS YP_004127076.1 319763139 10104510 complement(2527682..2528482) 1 NC_014910.1 KEGG: dia:Dtpsy_1515 lipoprotein, YaeC family; TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; lipoprotein, yaec family 2528482 10104510 Alide_2454 Alicycliphilus denitrificans BC lipoprotein, yaec family YP_004127076.1 2527682 R 596153 CDS YP_004127077.1 319763140 10104511 complement(2528588..2529253) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_1513 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2529253 10104511 Alide_2455 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004127077.1 2528588 R 596153 CDS YP_004127078.1 319763141 10104512 complement(2529253..2530296) 1 NC_014910.1 KEGG: dia:Dtpsy_1512 DL-methionine transporter ATP-binding subunit; PFAM: ABC transporter related; NIL domain; SMART: AAA ATPase; ABC transporter 2530296 10104512 Alide_2456 Alicycliphilus denitrificans BC ABC transporter YP_004127078.1 2529253 R 596153 CDS YP_004127079.1 319763142 10104513 complement(2530405..2530794) 1 NC_014910.1 KEGG: ajs:Ajs_2347 membrane protein-like protein; hypothetical protein 2530794 10104513 Alide_2457 Alicycliphilus denitrificans BC hypothetical protein YP_004127079.1 2530405 R 596153 CDS YP_004127080.1 319763143 10104514 complement(2530805..2531395) 1 NC_014910.1 TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain-containing protein; Zinc finger C4-type, RecR; KEGG: dia:Dtpsy_1509 recombination protein RecR; SMART: Toprim sub domain-containing protein; recombination protein recr 2531395 10104514 Alide_2458 Alicycliphilus denitrificans BC recombination protein recr YP_004127080.1 2530805 R 596153 CDS YP_004127081.1 319763144 10104515 complement(2531415..2531747) 1 NC_014910.1 PFAM: Uncharacterised protein family UPF0133; KEGG: ctt:CtCNB1_1631 hypothetical protein; hypothetical protein 2531747 10104515 Alide_2459 Alicycliphilus denitrificans BC hypothetical protein YP_004127081.1 2531415 R 596153 CDS YP_004127082.1 319763145 10104516 complement(2531779..2533635) 1 NC_014910.1 SMART: AAA ATPase; TIGRFAM: DNA polymerase III, subunits gamma and tau; KEGG: dia:Dtpsy_1507 DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; DNA polymerase III subunits gamma/tau 2533635 10104516 Alide_2460 Alicycliphilus denitrificans BC DNA polymerase III subunits gamma/tau YP_004127082.1 2531779 R 596153 CDS YP_004127083.1 319763146 10104518 complement(2533818..2534645) 1 NC_014910.1 KEGG: cti:RALTA_A0628 transcriptional repressor for molybdate uptake; TIGRFAM: molybdate transport repressor, ModE; PFAM: TOBE domain-containing protein; regulatory protein LysR; molybdate transport repressor, mode 2534645 10104518 Alide_2461 Alicycliphilus denitrificans BC molybdate transport repressor, mode YP_004127083.1 2533818 R 596153 CDS YP_004127084.1 319763147 10104519 complement(2534682..2535533) 1 NC_014910.1 TIGRFAM: modD protein; KEGG: cli:Clim_0375 ModD protein; PFAM: Quinolinate phosphoribosyl transferase; modd protein 2535533 10104519 Alide_2462 Alicycliphilus denitrificans BC modd protein YP_004127084.1 2534682 R 596153 CDS YP_004127085.1 319763148 10104520 complement(2535530..2536192) 1 NC_014910.1 KEGG: dac:Daci_3882 binding-protein-dependent transport systems inner membrane component; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit 2536192 10104520 Alide_2463 Alicycliphilus denitrificans BC molybdate ABC transporter inner membrane subunit YP_004127085.1 2535530 R 596153 CDS YP_004127086.1 319763149 10104521 complement(2536193..2536909) 1 NC_014910.1 KEGG: dac:Daci_3883 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; molybdenum ABC transporter periplasmic molybdate-binding protein 2536909 10104521 Alide_2464 Alicycliphilus denitrificans BC molybdenum ABC transporter periplasmic molybdate-binding protein YP_004127086.1 2536193 R 596153 CDS YP_004127087.1 319763150 10104523 complement(2537595..2538683) 1 NC_014910.1 KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein; transposase is4 family protein 2538683 10104523 Alide_2466 Alicycliphilus denitrificans BC transposase is4 family protein YP_004127087.1 2537595 R 596153 CDS YP_004127088.1 319763151 10104524 complement(2539079..2539873) 1 NC_014910.1 PFAM: Methyltransferase type 11; KEGG: bpt:Bpet1277 hypothetical protein; type 11 methyltransferase 2539873 10104524 Alide_2467 Alicycliphilus denitrificans BC type 11 methyltransferase YP_004127088.1 2539079 R 596153 CDS YP_004127089.1 319763152 10104525 complement(2539870..2540631) 1 NC_014910.1 KEGG: dac:Daci_4650 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2540631 10104525 Alide_2468 Alicycliphilus denitrificans BC ABC transporter YP_004127089.1 2539870 R 596153 CDS YP_004127090.1 319763153 10104526 complement(2540628..2541626) 1 NC_014910.1 PFAM: transport system permease protein; KEGG: dac:Daci_4649 transport system permease protein; transport system permease 2541626 10104526 Alide_2469 Alicycliphilus denitrificans BC transport system permease YP_004127090.1 2540628 R 596153 CDS YP_004127091.1 319763154 10104527 complement(2541685..2542719) 1 NC_014910.1 PFAM: periplasmic binding protein; KEGG: dac:Daci_4648 periplasmic binding protein; periplasmic binding protein 2542719 10104527 Alide_2470 Alicycliphilus denitrificans BC periplasmic binding protein YP_004127091.1 2541685 R 596153 CDS YP_004127092.1 319763155 10104528 complement(2542716..2543255) 1 NC_014910.1 PFAM: Protein of unknown function DUF2478; KEGG: bpt:Bpet1276 hypothetical protein; hypothetical protein 2543255 10104528 Alide_2471 Alicycliphilus denitrificans BC hypothetical protein YP_004127092.1 2542716 R 596153 CDS YP_004127093.1 319763156 10104529 complement(2543335..2545314) 1 NC_014910.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: ctt:CtCNB1_0594 TonB-dependent receptor; tonb-dependent receptor plug 2545314 10104529 Alide_2472 Alicycliphilus denitrificans BC tonb-dependent receptor plug YP_004127093.1 2543335 R 596153 CDS YP_004127094.1 319763157 10104530 2545603..2546193 1 NC_014910.1 KEGG: dia:Dtpsy_1506 hypothetical protein; hypothetical protein 2546193 10104530 Alide_2473 Alicycliphilus denitrificans BC hypothetical protein YP_004127094.1 2545603 D 596153 CDS YP_004127095.1 319763158 10104531 complement(2546175..2547551) 1 NC_014910.1 PFAM: HI0933 family protein; KEGG: dia:Dtpsy_1505 HI0933 family protein; hi0933 family protein 2547551 10104531 Alide_2474 Alicycliphilus denitrificans BC hi0933 family protein YP_004127095.1 2546175 R 596153 CDS YP_004127096.1 319763159 10104532 2547792..2548676 1 NC_014910.1 PFAM: Pirin domain protein; KEGG: bpe:BP2937 hypothetical protein; pirin 2548676 10104532 Alide_2475 Alicycliphilus denitrificans BC pirin YP_004127096.1 2547792 D 596153 CDS YP_004127097.1 319763160 10104533 2548762..2549643 1 NC_014910.1 PFAM: Pirin domain protein; KEGG: pag:PLES_41041 pirin protein; pirin 2549643 10104533 Alide_2476 Alicycliphilus denitrificans BC pirin YP_004127097.1 2548762 D 596153 CDS YP_004127098.1 319763161 10104534 complement(2549650..2552937) 1 NC_014910.1 PFAM: UvrD/REP helicase; KEGG: dia:Dtpsy_1503 UvrD/REP helicase; UvrD/REP helicase 2552937 10104534 Alide_2477 Alicycliphilus denitrificans BC UvrD/REP helicase YP_004127098.1 2549650 R 596153 CDS YP_004127099.1 319763162 10104535 complement(2552930..2555497) 1 NC_014910.1 KEGG: ajs:Ajs_2356 exonuclease-like protein; exonuclease-like protein 2555497 10104535 Alide_2478 Alicycliphilus denitrificans BC exonuclease-like protein YP_004127099.1 2552930 R 596153 CDS YP_004127100.1 319763163 10104536 2555600..2555932 1 NC_014910.1 KEGG: vap:Vapar_2323 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; thioredoxin 2555932 10104536 Alide_2479 Alicycliphilus denitrificans BC thioredoxin YP_004127100.1 2555600 D 596153 CDS YP_004127101.1 319763164 10104537 2556159..2557421 1 NC_014910.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: ajs:Ajs_2358 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase; transcription termination factor rho 2557421 10104537 Alide_2480 Alicycliphilus denitrificans BC transcription termination factor rho YP_004127101.1 2556159 D 596153 CDS YP_004127102.1 319763165 10104538 2557508..2557762 1 NC_014910.1 KEGG: dia:Dtpsy_1495 ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; 50S ribosomal protein L31 2557762 10104538 Alide_2481 Alicycliphilus denitrificans BC 50S ribosomal protein L31 YP_004127102.1 2557508 D 596153 CDS YP_004127103.1 319763166 10104539 2557901..2559595 1 NC_014910.1 KEGG: ajs:Ajs_2364 inner membrane transmembrane protein; inner membrane transmembrane protein 2559595 10104539 Alide_2482 Alicycliphilus denitrificans BC inner membrane transmembrane protein YP_004127103.1 2557901 D 596153 CDS YP_004127104.1 319763167 10104540 2559595..2560953 1 NC_014910.1 KEGG: ajs:Ajs_2365 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; mate efflux family protein 2560953 10104540 Alide_2483 Alicycliphilus denitrificans BC mate efflux family protein YP_004127104.1 2559595 D 596153 CDS YP_004127105.1 319763168 10104541 complement(2560916..2562292) 1 NC_014910.1 TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: dia:Dtpsy_1492 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; phosphate regulon sensor kinase phor 2562292 10104541 Alide_2484 Alicycliphilus denitrificans BC phosphate regulon sensor kinase phor YP_004127105.1 2560916 R 596153 CDS YP_004127106.1 319763169 10104542 complement(2562360..2563061) 1 NC_014910.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: ajs:Ajs_2367 two component transcriptional regulator; SMART: response regulator receiver; phosphate regulon transcriptional regulatory protein PhoB 2563061 10104542 Alide_2485 Alicycliphilus denitrificans BC phosphate regulon transcriptional regulatory protein PhoB YP_004127106.1 2562360 R 596153 CDS YP_004127107.1 319763170 10104543 complement(2563058..2563759) 1 NC_014910.1 KEGG: ajs:Ajs_2368 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate transport system regulatory protein phou 2563759 10104543 Alide_2486 Alicycliphilus denitrificans BC phosphate transport system regulatory protein phou YP_004127107.1 2563058 R 596153 CDS YP_004127108.1 319763171 10104544 complement(2563756..2564544) 1 NC_014910.1 TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: aav:Aave_2629 phosphate ABC transporter, ATPase subunit; SMART: AAA ATPase; phosphate ABC transporter atpase subunit 2564544 10104544 Alide_2487 Alicycliphilus denitrificans BC phosphate ABC transporter atpase subunit YP_004127108.1 2563756 R 596153 CDS YP_004127109.1 319763172 10104545 complement(2564575..2565456) 1 NC_014910.1 KEGG: ajs:Ajs_2370 phosphate transporter permease subunit PtsA; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter membrane protein PstA 2565456 10104545 Alide_2488 Alicycliphilus denitrificans BC phosphate ABC transporter membrane protein PstA YP_004127109.1 2564575 R 596153 CDS YP_004127110.1 319763173 10104546 complement(2565453..2566475) 1 NC_014910.1 KEGG: dia:Dtpsy_1487 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter membrane protein PstC 2566475 10104546 Alide_2489 Alicycliphilus denitrificans BC phosphate ABC transporter membrane protein PstC YP_004127110.1 2565453 R 596153 CDS YP_004127111.1 319763174 10104547 complement(2566539..2567579) 1 NC_014910.1 KEGG: dia:Dtpsy_1486 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; phosphate ABC transporter substrate-binding protein 2567579 10104547 Alide_2490 Alicycliphilus denitrificans BC phosphate ABC transporter substrate-binding protein YP_004127111.1 2566539 R 596153 CDS YP_004127112.1 319763175 10104548 2567839..2569320 1 NC_014910.1 KEGG: dia:Dtpsy_1483 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 2569320 10104548 Alide_2491 Alicycliphilus denitrificans BC guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase YP_004127112.1 2567839 D 596153 CDS YP_004127113.1 319763176 10104549 complement(2569397..2569858) 1 NC_014910.1 PFAM: Phosphoglycerate mutase; KEGG: ajs:Ajs_2377 phosphohistidine phosphatase, SixA; phosphoglycerate mutase 2569858 10104549 Alide_2492 Alicycliphilus denitrificans BC phosphoglycerate mutase YP_004127113.1 2569397 R 596153 CDS YP_004127114.1 319763177 10104550 complement(2569858..2572032) 1 NC_014910.1 TIGRFAM: Polyphosphate kinase; KEGG: dia:Dtpsy_1480 polyphosphate kinase; PFAM: Polyphosphate kinase; polyphosphate kinase 2572032 10104550 Alide_2493 Alicycliphilus denitrificans BC polyphosphate kinase YP_004127114.1 2569858 R 596153 CDS YP_004127115.1 319763178 10104551 complement(2572295..2573113) 1 NC_014910.1 KEGG: dia:Dtpsy_1479 ornithine-acyl(acyl carrier protein) N-acyltransferase; ornithine-acyl(acyl carrier protein) n-acyltransferase 2573113 10104551 Alide_2494 Alicycliphilus denitrificans BC ornithine-acyl(acyl carrier protein) n-acyltransferase YP_004127115.1 2572295 R 596153 CDS YP_004127116.1 319763179 10104552 2573353..2575146 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: ajs:Ajs_2380 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase 2575146 10104552 Alide_2495 Alicycliphilus denitrificans BC diguanylate cyclase YP_004127116.1 2573353 D 596153 CDS YP_004127117.1 319763180 10104553 complement(2575238..2576572) 1 NC_014910.1 KEGG: dia:Dtpsy_1477 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucosamine mutase 2576572 10104553 Alide_2496 Alicycliphilus denitrificans BC phosphoglucosamine mutase YP_004127117.1 2575238 R 596153 CDS YP_004127118.1 319763181 10104554 complement(2576562..2577458) 1 NC_014910.1 TIGRFAM: dihydropteroate synthase; KEGG: ajs:Ajs_2382 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 2577458 10104554 Alide_2497 Alicycliphilus denitrificans BC dihydropteroate synthase YP_004127118.1 2576562 R 596153 CDS YP_004127119.1 319763182 10104555 complement(2577527..2579488) 1 NC_014910.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: dia:Dtpsy_1475 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; ATP-dependent metalloprotease ftsh 2579488 10104555 Alide_2498 Alicycliphilus denitrificans BC ATP-dependent metalloprotease ftsh YP_004127119.1 2577527 R 596153 CDS YP_004127120.1 319763183 10104556 complement(2579586..2580248) 1 NC_014910.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dia:Dtpsy_1474 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase rrmj/ftsj 2580248 10104556 Alide_2499 Alicycliphilus denitrificans BC ribosomal RNA methyltransferase rrmj/ftsj YP_004127120.1 2579586 R 596153 CDS YP_004127121.1 319763184 10104557 2580269..2580739 1 NC_014910.1 PFAM: protein of unknown function UPF0044; KEGG: dia:Dtpsy_1473 protein of unknown function UPF0044; hypothetical protein 2580739 10104557 Alide_2500 Alicycliphilus denitrificans BC hypothetical protein YP_004127121.1 2580269 D 596153 CDS YP_004127122.1 319763185 10104558 2580739..2581482 1 NC_014910.1 KEGG: dac:Daci_4928 hypothetical protein; hypothetical protein 2581482 10104558 Alide_2501 Alicycliphilus denitrificans BC hypothetical protein YP_004127122.1 2580739 D 596153 CDS YP_004127123.1 319763186 10104559 complement(2581483..2581890) 1 NC_014910.1 KEGG: ajs:Ajs_2388 hypothetical protein; hypothetical protein 2581890 10104559 Alide_2502 Alicycliphilus denitrificans BC hypothetical protein YP_004127123.1 2581483 R 596153 CDS YP_004127124.1 319763187 10104560 complement(2581893..2582369) 1 NC_014910.1 KEGG: dia:Dtpsy_1469 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein; transcription elongation factor grea 2582369 10104560 Alide_2503 Alicycliphilus denitrificans BC transcription elongation factor grea YP_004127124.1 2581893 R 596153 CDS YP_004127125.1 319763188 10104561 complement(2582496..2585747) 1 NC_014910.1 KEGG: dia:Dtpsy_1458 carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; carbamoyl-phosphate synthase large subunit 2585747 10104561 Alide_2504 Alicycliphilus denitrificans BC carbamoyl-phosphate synthase large subunit YP_004127125.1 2582496 R 596153 CDS YP_004127126.1 319763189 10104562 complement(2585747..2586925) 1 NC_014910.1 KEGG: aav:Aave_2610 carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; carbamoyl-phosphate synthase small subunit 2586925 10104562 Alide_2505 Alicycliphilus denitrificans BC carbamoyl-phosphate synthase small subunit YP_004127126.1 2585747 R 596153 CDS YP_004127127.1 319763190 10104564 complement(2587270..2587695) 1 NC_014910.1 KEGG: dia:Dtpsy_1455 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; regulatory protein merr 2587695 10104564 Alide_2506 Alicycliphilus denitrificans BC regulatory protein merr YP_004127127.1 2587270 R 596153 CDS YP_004127128.1 319763191 10104565 complement(2587795..2588148) 1 NC_014910.1 TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: dia:Dtpsy_1454 integration host factor subunit alpha; SMART: histone family protein DNA-binding protein; integration host factor subunit alpha 2588148 10104565 Alide_2507 Alicycliphilus denitrificans BC integration host factor subunit alpha YP_004127128.1 2587795 R 596153 CDS YP_004127129.1 319763192 10104566 complement(2588145..2590589) 1 NC_014910.1 KEGG: ajs:Ajs_2395 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 2590589 10104566 Alide_2508 Alicycliphilus denitrificans BC phenylalanyl-tRNA synthetase subunit beta YP_004127129.1 2588145 R 596153 CDS YP_004127130.1 319763193 10104567 complement(2590713..2591765) 1 NC_014910.1 KEGG: dia:Dtpsy_1452 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; phenylalanyl-tRNA synthetase subunit alpha 2591765 10104567 Alide_2509 Alicycliphilus denitrificans BC phenylalanyl-tRNA synthetase subunit alpha YP_004127130.1 2590713 R 596153 CDS YP_004127131.1 319763194 10104568 complement(2591867..2592226) 1 NC_014910.1 KEGG: ajs:Ajs_2397 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; 50S ribosomal protein L20 2592226 10104568 Alide_2510 Alicycliphilus denitrificans BC 50S ribosomal protein L20 YP_004127131.1 2591867 R 596153 CDS YP_004127132.1 319763195 10104569 complement(2592253..2592456) 1 NC_014910.1 KEGG: aav:Aave_2857 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; 50S ribosomal protein L35 2592456 10104569 Alide_2511 Alicycliphilus denitrificans BC 50S ribosomal protein L35 YP_004127132.1 2592253 R 596153 CDS YP_004127133.1 319763196 10104570 complement(2592632..2593156) 1 NC_014910.1 KEGG: dia:Dtpsy_1449 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; translation initiation factor if-3 2593156 10104570 Alide_2512 Alicycliphilus denitrificans BC translation initiation factor if-3 YP_004127133.1 2592632 R 596153 CDS YP_004127134.1 319763197 10104571 complement(2593310..2595229) 1 NC_014910.1 KEGG: ajs:Ajs_2400 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein; threonyl-tRNA synthetase 2595229 10104571 Alide_2513 Alicycliphilus denitrificans BC threonyl-tRNA synthetase YP_004127134.1 2593310 R 596153 CDS YP_004127135.1 319763198 10104572 complement(2595588..2596499) 1 NC_014910.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB4124 enzyme-regulator fusion protein; Gcn5-like N-acetyltransferase 2596499 10104572 Alide_2514 Alicycliphilus denitrificans BC Gcn5-like N-acetyltransferase YP_004127135.1 2595588 R 596153 CDS YP_004127136.1 319763199 10104574 complement(2596920..2598251) 1 NC_014910.1 KEGG: dia:Dtpsy_1447 isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; isocitrate lyase 2598251 10104574 Alide_2516 Alicycliphilus denitrificans BC isocitrate lyase YP_004127136.1 2596920 R 596153 CDS YP_004127137.1 319763200 10104575 2598517..2599536 1 NC_014910.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_2402 hypothetical protein; hypothetical protein 2599536 10104575 Alide_2517 Alicycliphilus denitrificans BC hypothetical protein YP_004127137.1 2598517 D 596153 CDS YP_004127138.1 319763201 10104576 2599693..2599974 1 NC_014910.1 KEGG: dia:Dtpsy_1444 SWIB/MDM2 domain protein; PFAM: SWIB/MDM2 domain-containing protein; SMART: SWIB domain; swib/mdm2 domain-containing protein 2599974 10104576 Alide_2518 Alicycliphilus denitrificans BC swib/mdm2 domain-containing protein YP_004127138.1 2599693 D 596153 CDS YP_004127139.1 319763202 10104577 2600169..2600441 1 NC_014910.1 KEGG: dia:Dtpsy_1443 BFD domain protein (2Fe-2S)-binding domain protein; manually curated; PFAM: BFD domain protein [2Fe-2S]-binding domain protein; hypothetical protein 2600441 10104577 Alide_2519 Alicycliphilus denitrificans BC hypothetical protein YP_004127139.1 2600169 D 596153 CDS YP_004127140.1 319763203 10104578 2600597..2601253 1 NC_014910.1 KEGG: dia:Dtpsy_1442 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain; tonb family protein 2601253 10104578 Alide_2520 Alicycliphilus denitrificans BC tonb family protein YP_004127140.1 2600597 D 596153 CDS YP_004127141.1 319763204 10104579 2601269..2601988 1 NC_014910.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_1441 MotA/TolQ/ExbB proton channel; mota/tolq/exbb proton channel 2601988 10104579 Alide_2521 Alicycliphilus denitrificans BC mota/tolq/exbb proton channel YP_004127141.1 2601269 D 596153 CDS YP_004127142.1 319763205 10104580 2601995..2602405 1 NC_014910.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2408 biopolymer transport protein ExbD/TolR; biopolymer transport protein exbd/tolr 2602405 10104580 Alide_2522 Alicycliphilus denitrificans BC biopolymer transport protein exbd/tolr YP_004127142.1 2601995 D 596153 CDS YP_004127143.1 319763206 10104581 2602501..2602728 1 NC_014910.1 PFAM: Hemin uptake protein hemP; KEGG: ajs:Ajs_2409 hypothetical protein; hemin uptake protein hemp 2602728 10104581 Alide_2523 Alicycliphilus denitrificans BC hemin uptake protein hemp YP_004127143.1 2602501 D 596153 CDS YP_004127144.1 319763207 10104582 complement(2602956..2603363) 1 NC_014910.1 PFAM: protein of unknown function DUF336; KEGG: dia:Dtpsy_1438 protein of unknown function DUF336; hypothetical protein 2603363 10104582 Alide_2524 Alicycliphilus denitrificans BC hypothetical protein YP_004127144.1 2602956 R 596153 CDS YP_004127145.1 319763208 10104583 2603582..2604271 1 NC_014910.1 PFAM: protein of unknown function UPF0005; KEGG: dia:Dtpsy_1437 protein of unknown function UPF0005; hypothetical protein 2604271 10104583 Alide_2525 Alicycliphilus denitrificans BC hypothetical protein YP_004127145.1 2603582 D 596153 CDS YP_004127146.1 319763209 10104584 2604390..2604893 1 NC_014910.1 KEGG: rme:Rmet_3623 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; regulatory protein marr 2604893 10104584 Alide_2526 Alicycliphilus denitrificans BC regulatory protein marr YP_004127146.1 2604390 D 596153 CDS YP_004127147.1 319763210 10104585 2604890..2606323 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B5563 major facilitator transporter; major facilitator superfamily protein 2606323 10104585 Alide_2527 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004127147.1 2604890 D 596153 CDS YP_004127148.1 319763211 10104586 2606377..2606760 1 NC_014910.1 KEGG: ajs:Ajs_2412 hypothetical protein; hypothetical protein 2606760 10104586 Alide_2528 Alicycliphilus denitrificans BC hypothetical protein YP_004127148.1 2606377 D 596153 CDS YP_004127149.1 319763212 10104587 complement(2606793..2607125) 1 NC_014910.1 PFAM: small multidrug resistance protein; KEGG: dia:Dtpsy_1617 small multidrug resistance protein; small multidrug resistance protein 2607125 10104587 Alide_2529 Alicycliphilus denitrificans BC small multidrug resistance protein YP_004127149.1 2606793 R 596153 CDS YP_004127150.1 319763213 10104588 2607340..2607930 1 NC_014910.1 PFAM: Chromate transporter; KEGG: dia:Dtpsy_1615 chromate transporter; chromate transporter 2607930 10104588 Alide_2530 Alicycliphilus denitrificans BC chromate transporter YP_004127150.1 2607340 D 596153 CDS YP_004127151.1 319763214 10104589 2607933..2608526 1 NC_014910.1 PFAM: Chromate transporter; KEGG: dia:Dtpsy_1614 chromate transporter; chromate transporter 2608526 10104589 Alide_2531 Alicycliphilus denitrificans BC chromate transporter YP_004127151.1 2607933 D 596153 CDS YP_004127152.1 319763215 10104590 complement(2608548..2609375) 1 NC_014910.1 PFAM: Silent information regulator protein Sir2; KEGG: dia:Dtpsy_1612 silent information regulator protein Sir2; silent information regulator protein sir2 2609375 10104590 Alide_2532 Alicycliphilus denitrificans BC silent information regulator protein sir2 YP_004127152.1 2608548 R 596153 CDS YP_004127153.1 319763216 10104591 complement(2609397..2610062) 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: dia:Dtpsy_1611 regulatory protein TetR; regulatory protein tetr 2610062 10104591 Alide_2533 Alicycliphilus denitrificans BC regulatory protein tetr YP_004127153.1 2609397 R 596153 CDS YP_004127154.1 319763217 10104592 2610146..2610499 1 NC_014910.1 PFAM: protein of unknown function DUF1428; KEGG: dia:Dtpsy_1610 protein of unknown function DUF1428; hypothetical protein 2610499 10104592 Alide_2534 Alicycliphilus denitrificans BC hypothetical protein YP_004127154.1 2610146 D 596153 CDS YP_004127155.1 319763218 10104593 2610544..2610891 1 NC_014910.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pol:Bpro_2417 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating gfa 2610891 10104593 Alide_2535 Alicycliphilus denitrificans BC glutathione-dependent formaldehyde-activating gfa YP_004127155.1 2610544 D 596153 CDS YP_004127156.1 319763219 10104594 2610985..2611437 1 NC_014910.1 KEGG: ajs:Ajs_2265 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2611437 10104594 Alide_2536 Alicycliphilus denitrificans BC 3-demethylubiquinone-9 3-methyltransferase YP_004127156.1 2610985 D 596153 CDS YP_004127157.1 319763220 10104595 2611470..2611916 1 NC_014910.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: dia:Dtpsy_1608 activator of HSP90 ATPase 1 family protein; activator of hsp90 atpase 1 family protein 2611916 10104595 Alide_2537 Alicycliphilus denitrificans BC activator of hsp90 atpase 1 family protein YP_004127157.1 2611470 D 596153 CDS YP_004127158.1 319763221 10104596 2611952..2612437 1 NC_014910.1 KEGG: gur:Gura_0848 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2612437 10104596 Alide_2538 Alicycliphilus denitrificans BC 3-demethylubiquinone-9 3-methyltransferase YP_004127158.1 2611952 D 596153 CDS YP_004127159.1 319763222 10104597 2612561..2612944 1 NC_014910.1 KEGG: dac:Daci_4029 hypothetical protein; hypothetical protein 2612944 10104597 Alide_2539 Alicycliphilus denitrificans BC hypothetical protein YP_004127159.1 2612561 D 596153 CDS YP_004127160.1 319763223 10104598 2612951..2613409 1 NC_014910.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: dar:Daro_2725 hypothetical protein; activator of hsp90 atpase 1 family protein 2613409 10104598 Alide_2540 Alicycliphilus denitrificans BC activator of hsp90 atpase 1 family protein YP_004127160.1 2612951 D 596153 CDS YP_004127161.1 319763224 10104599 complement(2613416..2614162) 1 NC_014910.1 KEGG: dia:Dtpsy_1606 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; RNA methyltransferase, trmh family, group 3 2614162 10104599 Alide_2541 Alicycliphilus denitrificans BC RNA methyltransferase, trmh family, group 3 YP_004127161.1 2613416 R 596153 CDS YP_004127162.1 319763225 10104600 2614305..2615516 1 NC_014910.1 PFAM: sodium:dicarboxylate symporter; KEGG: dia:Dtpsy_1605 serine/threonine transporter SstT; sodium:dicarboxylate symporter 2615516 10104600 Alide_2542 Alicycliphilus denitrificans BC sodium:dicarboxylate symporter YP_004127162.1 2614305 D 596153 CDS YP_004127163.1 319763226 10104601 complement(2615550..2616272) 1 NC_014910.1 KEGG: dia:Dtpsy_1604 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2616272 10104601 Alide_2543 Alicycliphilus denitrificans BC ABC transporter YP_004127163.1 2615550 R 596153 CDS YP_004127164.1 319763227 10104602 2616291..2616944 1 NC_014910.1 KEGG: dia:Dtpsy_1603 lipolytic protein G-D-S-L family; PFAM: lipolytic protein G-D-S-L family; arylesterase 2616944 10104602 Alide_2544 Alicycliphilus denitrificans BC arylesterase YP_004127164.1 2616291 D 596153 CDS YP_004127165.1 319763228 10104603 complement(2616958..2617788) 1 NC_014910.1 PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: dia:Dtpsy_1602 integral membrane protein; hypothetical protein 2617788 10104603 Alide_2545 Alicycliphilus denitrificans BC hypothetical protein YP_004127165.1 2616958 R 596153 CDS YP_004127166.1 319763229 10104604 complement(2617901..2619130) 1 NC_014910.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: dia:Dtpsy_1601 Cys/Met metabolism pyridoxal-phosphate-dependent protein; cys/met metabolism pyridoxal-phosphate-dependent protein 2619130 10104604 Alide_2546 Alicycliphilus denitrificans BC cys/met metabolism pyridoxal-phosphate-dependent protein YP_004127166.1 2617901 R 596153 CDS YP_004127167.1 319763230 10104605 complement(2619151..2619606) 1 NC_014910.1 KEGG: dia:Dtpsy_1600 transport-associated; PFAM: transport-associated; SMART: Transport-associated and nodulation region; transport-associated protein 2619606 10104605 Alide_2547 Alicycliphilus denitrificans BC transport-associated protein YP_004127167.1 2619151 R 596153 CDS YP_004127168.1 319763231 10104606 2619733..2621418 1 NC_014910.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ajs:Ajs_2275 sulphate transporter; sulfate transporter 2621418 10104606 Alide_2548 Alicycliphilus denitrificans BC sulfate transporter YP_004127168.1 2619733 D 596153 CDS YP_004127169.1 319763232 10104607 2621455..2622228 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dia:Dtpsy_1598 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 2622228 10104607 Alide_2549 Alicycliphilus denitrificans BC diguanylate cyclase YP_004127169.1 2621455 D 596153 CDS YP_004127170.1 319763233 10104608 2622239..2623108 1 NC_014910.1 KEGG: dia:Dtpsy_1597 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 2623108 10104608 Alide_2550 Alicycliphilus denitrificans BC cobyrinic acid ac-diamide synthase YP_004127170.1 2622239 D 596153 CDS YP_004127171.1 319763234 10104609 complement(2623179..2625083) 1 NC_014910.1 KEGG: dia:Dtpsy_1825 propionyl-CoA synthetase; TIGRFAM: propionate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; propionate/CoA ligase 2625083 10104609 Alide_2551 Alicycliphilus denitrificans BC propionate/CoA ligase YP_004127171.1 2623179 R 596153 CDS YP_004127172.1 319763235 10104610 complement(2625205..2625813) 1 NC_014910.1 PFAM: isochorismatase hydrolase; KEGG: dia:Dtpsy_1824 isochorismatase hydrolase; isochorismatase hydrolase 2625813 10104610 Alide_2552 Alicycliphilus denitrificans BC isochorismatase hydrolase YP_004127172.1 2625205 R 596153 CDS YP_004127173.1 319763236 10104611 complement(2625877..2626980) 1 NC_014910.1 PFAM: NHL repeat containing protein; KEGG: dia:Dtpsy_1823 glucose sorbosone dehydrogenase; nhl repeat containing protein 2626980 10104611 Alide_2553 Alicycliphilus denitrificans BC nhl repeat containing protein YP_004127173.1 2625877 R 596153 CDS YP_004127174.1 319763237 10104612 complement(2627126..2628040) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1814 transcriptional regulator, LysR family; LysR family transcriptional regulator 2628040 10104612 Alide_2554 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127174.1 2627126 R 596153 CDS YP_004127175.1 319763238 10104613 2628171..2629688 1 NC_014910.1 KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase [acylating]; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; methylmalonate-semialdehyde dehydrogenase 2629688 10104613 Alide_2555 Alicycliphilus denitrificans BC methylmalonate-semialdehyde dehydrogenase YP_004127175.1 2628171 D 596153 CDS YP_004127176.1 319763239 10104614 2629685..2630083 1 NC_014910.1 KEGG: ajs:Ajs_2008 hypothetical protein; hypothetical protein 2630083 10104614 Alide_2556 Alicycliphilus denitrificans BC hypothetical protein YP_004127176.1 2629685 D 596153 CDS YP_004127177.1 319763240 10104615 2630109..2631275 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_2007 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 2631275 10104615 Alide_2557 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127177.1 2630109 D 596153 CDS YP_004127178.1 319763241 10104616 2631343..2631729 1 NC_014910.1 KEGG: dia:Dtpsy_1810 hypothetical protein; hypothetical protein 2631729 10104616 Alide_2558 Alicycliphilus denitrificans BC hypothetical protein YP_004127178.1 2631343 D 596153 CDS YP_004127179.1 319763242 10104617 2631760..2632656 1 NC_014910.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: dia:Dtpsy_1809 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 2632656 10104617 Alide_2559 Alicycliphilus denitrificans BC 3-hydroxyisobutyrate dehydrogenase YP_004127179.1 2631760 D 596153 CDS YP_004127180.1 319763243 10104618 2632819..2633652 1 NC_014910.1 TIGRFAM: methyltransferase FkbM family; KEGG: ter:Tery_1754 FkbM family methyltransferase; methyltransferase fkbm family 2633652 10104618 Alide_2560 Alicycliphilus denitrificans BC methyltransferase fkbm family YP_004127180.1 2632819 D 596153 CDS YP_004127181.1 319763244 10104619 complement(2634150..2634539) 1 NC_014910.1 KEGG: dia:Dtpsy_1801 hypothetical protein; hypothetical protein 2634539 10104619 Alide_2561 Alicycliphilus denitrificans BC hypothetical protein YP_004127181.1 2634150 R 596153 CDS YP_004127182.1 319763245 10104620 2634677..2635885 1 NC_014910.1 KEGG: dia:Dtpsy_1800 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 2635885 10104620 Alide_2562 Alicycliphilus denitrificans BC tryptophan synthase subunit beta YP_004127182.1 2634677 D 596153 CDS YP_004127183.1 319763246 10104621 2635913..2636251 1 NC_014910.1 PFAM: protein of unknown function DUF469; KEGG: dia:Dtpsy_1799 protein of unknown function DUF469; hypothetical protein 2636251 10104621 Alide_2563 Alicycliphilus denitrificans BC hypothetical protein YP_004127183.1 2635913 D 596153 CDS YP_004127184.1 319763247 10104622 complement(2636328..2637908) 1 NC_014910.1 TIGRFAM: galactarate dehydratase; KEGG: ajs:Ajs_1998 galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase 2637908 10104622 Alide_2564 Alicycliphilus denitrificans BC galactarate dehydratase YP_004127184.1 2636328 R 596153 CDS YP_004127185.1 319763248 10104623 complement(2637949..2638947) 1 NC_014910.1 KEGG: ajs:Ajs_1997 hypothetical protein; hypothetical protein 2638947 10104623 Alide_2565 Alicycliphilus denitrificans BC hypothetical protein YP_004127185.1 2637949 R 596153 CDS YP_004127186.1 319763249 10104624 complement(2638972..2640267) 1 NC_014910.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ctt:CtCNB1_0239 mandelate racemase/muconate lactonizing; mandelate racemase/muconate lactonizing protein 2640267 10104624 Alide_2566 Alicycliphilus denitrificans BC mandelate racemase/muconate lactonizing protein YP_004127186.1 2638972 R 596153 CDS YP_004127187.1 319763250 10104625 2640273..2641103 1 NC_014910.1 KEGG: ctt:CtCNB1_0240 GntR-like protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2641103 10104625 Alide_2567 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004127187.1 2640273 D 596153 CDS YP_004127188.1 319763251 10104626 2641297..2642283 1 NC_014910.1 KEGG: dia:Dtpsy_1794 hypothetical protein; hypothetical protein 2642283 10104626 Alide_2568 Alicycliphilus denitrificans BC hypothetical protein YP_004127188.1 2641297 D 596153 CDS YP_004127189.1 319763252 10104627 2642355..2643266 1 NC_014910.1 TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: dia:Dtpsy_1793 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; 5-dehydro-4-deoxyglucarate dehydratase 2643266 10104627 Alide_2569 Alicycliphilus denitrificans BC 5-dehydro-4-deoxyglucarate dehydratase YP_004127189.1 2642355 D 596153 CDS YP_004127190.1 319763253 10104628 2643318..2644271 1 NC_014910.1 KEGG: ajs:Ajs_1992 hypothetical protein; hypothetical protein 2644271 10104628 Alide_2570 Alicycliphilus denitrificans BC hypothetical protein YP_004127190.1 2643318 D 596153 CDS YP_004127191.1 319763254 10104629 2644283..2645275 1 NC_014910.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ajs:Ajs_1991 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 2645275 10104629 Alide_2571 Alicycliphilus denitrificans BC d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein YP_004127191.1 2644283 D 596153 CDS YP_004127192.1 319763255 10104630 2645306..2646643 1 NC_014910.1 KEGG: dia:Dtpsy_1790 glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase 2646643 10104630 Alide_2572 Alicycliphilus denitrificans BC glucarate dehydratase YP_004127192.1 2645306 D 596153 CDS YP_004127193.1 319763256 10104631 2646716..2648164 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: ctt:CtCNB1_0246 aldehyde dehydrogenase; aldehyde dehydrogenase 2648164 10104631 Alide_2573 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004127193.1 2646716 D 596153 CDS YP_004127194.1 319763257 10104632 2648234..2648986 1 NC_014910.1 TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: dia:Dtpsy_1788 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 2648986 10104632 Alide_2574 Alicycliphilus denitrificans BC leucyl/phenylalanyl-tRNA/protein transferase YP_004127194.1 2648234 D 596153 CDS YP_004127195.1 319763258 10104633 2648983..2649726 1 NC_014910.1 PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: dia:Dtpsy_1787 arginyl-tRNA-protein transferase; arginine-tRNA-protein transferase domain-containing protein 2649726 10104633 Alide_2575 Alicycliphilus denitrificans BC arginine-tRNA-protein transferase domain-containing protein YP_004127195.1 2648983 D 596153 CDS YP_004127196.1 319763259 10104634 complement(2649799..2650500) 1 NC_014910.1 PFAM: Pirin domain protein; KEGG: ajs:Ajs_1985 pirin domain-containing protein; pirin 2650500 10104634 Alide_2576 Alicycliphilus denitrificans BC pirin YP_004127196.1 2649799 R 596153 CDS YP_004127197.1 319763260 10104635 2650612..2651547 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1784 transcriptional regulator, LysR family; LysR family transcriptional regulator 2651547 10104635 Alide_2577 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127197.1 2650612 D 596153 CDS YP_004127198.1 319763261 10104636 2651622..2652716 1 NC_014910.1 PFAM: amine oxidase; KEGG: ajs:Ajs_1983 FAD dependent oxidoreductase; amine oxidase 2652716 10104636 Alide_2578 Alicycliphilus denitrificans BC amine oxidase YP_004127198.1 2651622 D 596153 CDS YP_004127199.1 319763262 10104637 2652713..2653678 1 NC_014910.1 KEGG: ajs:Ajs_1982 glutamate--tRNA ligase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamate--tRNA ligase 2653678 10104637 Alide_2579 Alicycliphilus denitrificans BC glutamate--tRNA ligase YP_004127199.1 2652713 D 596153 CDS YP_004127200.1 319763263 10104638 2653636..2654409 1 NC_014910.1 KEGG: dia:Dtpsy_1781 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-n(7)-)-methyltransferase 2654409 10104638 Alide_2580 Alicycliphilus denitrificans BC tRNA (guanine-n(7)-)-methyltransferase YP_004127200.1 2653636 D 596153 CDS YP_004127201.1 319763264 10104639 2654438..2655442 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dia:Dtpsy_1780 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 2655442 10104639 Alide_2581 Alicycliphilus denitrificans BC diguanylate cyclase YP_004127201.1 2654438 D 596153 CDS YP_004127202.1 319763265 10104640 complement(2655493..2658114) 1 NC_014910.1 KEGG: dia:Dtpsy_1779 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; alanyl-tRNA synthetase 2658114 10104640 Alide_2582 Alicycliphilus denitrificans BC alanyl-tRNA synthetase YP_004127202.1 2655493 R 596153 CDS YP_004127203.1 319763266 10104641 2658334..2659248 1 NC_014910.1 PFAM: dihydrodipicolinate synthetase; KEGG: vap:Vapar_5222 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 2659248 10104641 Alide_2583 Alicycliphilus denitrificans BC dihydrodipicolinate synthetase YP_004127203.1 2658334 D 596153 CDS YP_004127204.1 319763267 10104642 2659269..2659904 1 NC_014910.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ctt:CtCNB1_4596 tripartite ATP-independent periplasmic; tripartite ATP-independent periplasmic transporter dctq component 2659904 10104642 Alide_2584 Alicycliphilus denitrificans BC tripartite ATP-independent periplasmic transporter dctq component YP_004127204.1 2659269 D 596153 CDS YP_004127205.1 319763268 10104643 2659922..2661187 1 NC_014910.1 KEGG: ctt:CtCNB1_4595 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM 2661187 10104643 Alide_2585 Alicycliphilus denitrificans BC trap dicarboxylate transporter subunit DctM YP_004127205.1 2659922 D 596153 CDS YP_004127206.1 319763269 10104644 2661213..2662199 1 NC_014910.1 PFAM: Extracellular solute-binding protein, family 7; KEGG: ctt:CtCNB1_4594 TRAP dicarboxylate transporter, DctP subunit; ABC transporter substrate-binding protein 2662199 10104644 Alide_2586 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127206.1 2661213 D 596153 CDS YP_004127207.1 319763270 10104645 2662257..2663291 1 NC_014910.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: bpd:BURPS668_A0565 malate/L-lactate dehydrogenase family protein; malate/l-lactate dehydrogenase 2663291 10104645 Alide_2587 Alicycliphilus denitrificans BC malate/l-lactate dehydrogenase YP_004127207.1 2662257 D 596153 CDS YP_004127208.1 319763271 10104646 2663366..2664040 1 NC_014910.1 KEGG: vap:Vapar_5216 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2664040 10104646 Alide_2588 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004127208.1 2663366 D 596153 CDS YP_004127209.1 319763272 10104647 2664064..2665014 1 NC_014910.1 PFAM: pseudouridine synthase; KEGG: dia:Dtpsy_1777 pseudouridine synthase; pseudouridine synthase 2665014 10104647 Alide_2589 Alicycliphilus denitrificans BC pseudouridine synthase YP_004127209.1 2664064 D 596153 CDS YP_004127210.1 319763273 10104648 complement(2664989..2667694) 1 NC_014910.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dia:Dtpsy_1832 GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase 2667694 10104648 Alide_2590 Alicycliphilus denitrificans BC Gcn5-like N-acetyltransferase YP_004127210.1 2664989 R 596153 CDS YP_004127211.1 319763274 10104649 complement(2667741..2669084) 1 NC_014910.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; KEGG: dia:Dtpsy_1831 3-deoxy-D-manno-octulosonic-acid transferase domain protein; three-deoxy-d-manno-octulosonic-acid transferase domain-containing protein 2669084 10104649 Alide_2591 Alicycliphilus denitrificans BC three-deoxy-d-manno-octulosonic-acid transferase domain-containing protein YP_004127211.1 2667741 R 596153 CDS YP_004127212.1 319763275 10104650 complement(2669105..2670493) 1 NC_014910.1 KEGG: dia:Dtpsy_1830 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase 2670493 10104650 Alide_2592 Alicycliphilus denitrificans BC phosphoglucomutase YP_004127212.1 2669105 R 596153 CDS YP_004127213.1 319763276 10104651 complement(2670562..2671533) 1 NC_014910.1 KEGG: dac:Daci_0982 hypothetical protein; hypothetical protein 2671533 10104651 Alide_2593 Alicycliphilus denitrificans BC hypothetical protein YP_004127213.1 2670562 R 596153 CDS YP_004127214.1 319763277 10104652 complement(2671546..2672520) 1 NC_014910.1 KEGG: vei:Veis_0062 hypothetical protein; hypothetical protein 2672520 10104652 Alide_2594 Alicycliphilus denitrificans BC hypothetical protein YP_004127214.1 2671546 R 596153 CDS YP_004127215.1 319763278 10104653 complement(2672615..2673421) 1 NC_014910.1 KEGG: rsc:RCFBP_20182 myo-inositol catabolism protein, protein IolB; myo-inositol catabolism protein, protein iolb 2673421 10104653 Alide_2595 Alicycliphilus denitrificans BC myo-inositol catabolism protein, protein iolb YP_004127215.1 2672615 R 596153 CDS YP_004127216.1 319763279 10104654 complement(2673418..2675373) 1 NC_014910.1 PFAM: Protein of unknown function DUF2090; PfkB domain protein; KEGG: dac:Daci_0985 ribokinase-like domain-containing protein; hypothetical protein 2675373 10104654 Alide_2596 Alicycliphilus denitrificans BC hypothetical protein YP_004127216.1 2673418 R 596153 CDS YP_004127217.1 319763280 10104655 2675468..2676340 1 NC_014910.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: dac:Daci_0986 RpiR family transcriptional regulator; sugar isomerase (sis) 2676340 10104655 Alide_2597 Alicycliphilus denitrificans BC sugar isomerase (sis) YP_004127217.1 2675468 D 596153 CDS YP_004127218.1 319763281 10104656 2676402..2677901 1 NC_014910.1 KEGG: ajs:Ajs_2020 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada; PFAM: AlkA domain protein; Ada metal-binding domain-containing protein; helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; SMART: Helix-turn-helix, AraC domain; HhH-GPD family protein; AlkA domain-containing protein 2677901 10104656 Alide_2598 Alicycliphilus denitrificans BC AlkA domain-containing protein YP_004127218.1 2676402 D 596153 CDS YP_004127219.1 319763282 10104657 2677960..2678487 1 NC_014910.1 KEGG: dia:Dtpsy_1828 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 2678487 10104657 Alide_2599 Alicycliphilus denitrificans BC methylated-DNA--protein-cysteine methyltransferase YP_004127219.1 2677960 D 596153 CDS YP_004127220.1 319763283 10104658 2678484..2679407 1 NC_014910.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dia:Dtpsy_1827 protein of unknown function DUF6 transmembrane; hypothetical protein 2679407 10104658 Alide_2600 Alicycliphilus denitrificans BC hypothetical protein YP_004127220.1 2678484 D 596153 CDS YP_004127221.1 319763284 10104659 complement(2679427..2680389) 1 NC_014910.1 KEGG: aav:Aave_3080 adenylate/guanylate cyclase; PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Forkhead-associated protein; forkhead-associated protein 2680389 10104659 Alide_2601 Alicycliphilus denitrificans BC forkhead-associated protein YP_004127221.1 2679427 R 596153 CDS YP_004127222.1 319763285 10104660 complement(2680595..2681566) 1 NC_014910.1 KEGG: dia:Dtpsy_1593 muramoyltetrapeptide carboxypeptidase; PFAM: peptidase U61 LD-carboxypeptidase A; muramoyltetrapeptide carboxypeptidase 2681566 10104660 Alide_2602 Alicycliphilus denitrificans BC muramoyltetrapeptide carboxypeptidase YP_004127222.1 2680595 R 596153 CDS YP_004127223.1 319763286 10104661 complement(2681550..2682626) 1 NC_014910.1 PFAM: CMP/dCMP deaminase zinc-binding; alpha/beta hydrolase fold; KEGG: ajs:Ajs_2282 CMP/dCMP deaminase, zinc-binding; cmp/dcmp deaminase zinc-binding protein 2682626 10104661 Alide_2603 Alicycliphilus denitrificans BC cmp/dcmp deaminase zinc-binding protein YP_004127223.1 2681550 R 596153 CDS YP_004127224.1 319763287 10104662 complement(2682674..2683306) 1 NC_014910.1 PFAM: Negative transcriptional regulator; KEGG: vap:Vapar_2794 FMN-binding negative transcriptional regulator; negative transcriptional regulator 2683306 10104662 Alide_2604 Alicycliphilus denitrificans BC negative transcriptional regulator YP_004127224.1 2682674 R 596153 CDS YP_004127225.1 319763288 10104663 2683359..2685332 1 NC_014910.1 PFAM: peptidase U32; KEGG: dia:Dtpsy_1589 peptidase U32; peptidase u32 2685332 10104663 Alide_2605 Alicycliphilus denitrificans BC peptidase u32 YP_004127225.1 2683359 D 596153 CDS YP_004127226.1 319763289 10104664 2685418..2686695 1 NC_014910.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: dia:Dtpsy_1588 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; o-acetylhomoserine/o-acetylserine sulfhydrylase 2686695 10104664 Alide_2606 Alicycliphilus denitrificans BC o-acetylhomoserine/o-acetylserine sulfhydrylase YP_004127226.1 2685418 D 596153 CDS YP_004127227.1 319763290 10104665 complement(2686745..2688040) 1 NC_014910.1 PFAM: protein of unknown function DUF323; KEGG: dia:Dtpsy_1587 protein of unknown function DUF323; hypothetical protein 2688040 10104665 Alide_2607 Alicycliphilus denitrificans BC hypothetical protein YP_004127227.1 2686745 R 596153 CDS YP_004127228.1 319763291 10104666 complement(2688054..2689028) 1 NC_014910.1 KEGG: dia:Dtpsy_1586 methyltransferase; TIGRFAM: methyltransferase; PFAM: Protein of unknown function DUF2260; methyltransferase 2689028 10104666 Alide_2608 Alicycliphilus denitrificans BC methyltransferase YP_004127228.1 2688054 R 596153 CDS YP_004127229.1 319763292 10104667 complement(2689278..2689868) 1 NC_014910.1 KEGG: dia:Dtpsy_1585 OmpW family protein; manually curated; PFAM: OmpW family protein; ompw family protein 2689868 10104667 Alide_2609 Alicycliphilus denitrificans BC ompw family protein YP_004127229.1 2689278 R 596153 CDS YP_004127230.1 319763293 10104668 complement(2690013..2691005) 1 NC_014910.1 PFAM: protein of unknown function DUF808; KEGG: ajs:Ajs_2290 hypothetical protein; hypothetical protein 2691005 10104668 Alide_2610 Alicycliphilus denitrificans BC hypothetical protein YP_004127230.1 2690013 R 596153 CDS YP_004127231.1 319763294 10104669 complement(2691109..2695128) 1 NC_014910.1 TIGRFAM: phosphoribosylformylglycinamidine synthase; KEGG: dia:Dtpsy_1582 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine synthase 2695128 10104669 Alide_2611 Alicycliphilus denitrificans BC phosphoribosylformylglycinamidine synthase YP_004127231.1 2691109 R 596153 CDS YP_004127232.1 319763295 10104670 2695309..2696127 1 NC_014910.1 KEGG: dia:Dtpsy_1581 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 2696127 10104670 Alide_2612 Alicycliphilus denitrificans BC methionine aminopeptidase YP_004127232.1 2695309 D 596153 CDS YP_004127233.1 319763296 10104671 2696175..2698799 1 NC_014910.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: dia:Dtpsy_1580 PII uridylyl-transferase; PFAM: GlnD PII-uridylyltransferase; protein of unknown function DUF294 nucleotidyltransferase; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; protein-p-ii uridylyltransferase 2698799 10104671 Alide_2613 Alicycliphilus denitrificans BC protein-p-ii uridylyltransferase YP_004127233.1 2696175 D 596153 CDS YP_004127234.1 319763297 10104672 complement(2698809..2700287) 1 NC_014910.1 KEGG: ctt:CtCNB1_3177 uracil-xanthine permease; TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; xanthine permease 2700287 10104672 Alide_2614 Alicycliphilus denitrificans BC xanthine permease YP_004127234.1 2698809 R 596153 CDS YP_004127235.1 319763298 10104673 complement(2700519..2701058) 1 NC_014910.1 TIGRFAM: peptide deformylase; KEGG: dac:Daci_4855 peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 2701058 10104673 Alide_2615 Alicycliphilus denitrificans BC peptide deformylase YP_004127235.1 2700519 R 596153 CDS YP_004127236.1 319763299 10104674 2701152..2701571 1 NC_014910.1 PFAM: protein of unknown function DUF454; KEGG: ajs:Ajs_2296 hypothetical protein; hypothetical protein 2701571 10104674 Alide_2616 Alicycliphilus denitrificans BC hypothetical protein YP_004127236.1 2701152 D 596153 CDS YP_004127237.1 319763300 10104678 2702405..2702731 1 NC_014910.1 KEGG: pzu:PHZ_c2127 hypothetical protein; hypothetical protein 2702731 10104678 Alide_2618 Alicycliphilus denitrificans BC hypothetical protein YP_004127237.1 2702405 D 596153 CDS YP_004127238.1 319763301 10104679 2702733..2703335 1 NC_014910.1 KEGG: pzu:PHZ_c2128 hypothetical protein; hypothetical protein 2703335 10104679 Alide_2619 Alicycliphilus denitrificans BC hypothetical protein YP_004127238.1 2702733 D 596153 CDS YP_004127239.1 319763302 10104680 complement(2703620..2704879) 1 NC_014910.1 KEGG: aav:Aave_2572 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase, nADP-dependent 2704879 10104680 Alide_2620 Alicycliphilus denitrificans BC isocitrate dehydrogenase, nADP-dependent YP_004127239.1 2703620 R 596153 CDS YP_004127240.1 319763303 10104681 2705402..2705875 1 NC_014910.1 PFAM: protein of unknown function DUF192; KEGG: dia:Dtpsy_1560 protein of unknown function DUF192; hypothetical protein 2705875 10104681 Alide_2621 Alicycliphilus denitrificans BC hypothetical protein YP_004127240.1 2705402 D 596153 CDS YP_004127241.1 319763304 10104682 complement(2705945..2708182) 1 NC_014910.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: ajs:Ajs_2300 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase, nADP-dependent 2708182 10104682 Alide_2622 Alicycliphilus denitrificans BC isocitrate dehydrogenase, nADP-dependent YP_004127241.1 2705945 R 596153 CDS YP_004127242.1 319763305 10104683 complement(2708482..2709063) 1 NC_014910.1 KEGG: ajs:Ajs_2301 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; superoxide dismutase 2709063 10104683 Alide_2623 Alicycliphilus denitrificans BC superoxide dismutase YP_004127242.1 2708482 R 596153 CDS YP_004127243.1 319763306 10104684 complement(2709206..2710543) 1 NC_014910.1 TIGRFAM: exodeoxyribonuclease VII, large subunit; KEGG: ajs:Ajs_2302 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 2710543 10104684 Alide_2624 Alicycliphilus denitrificans BC exodeoxyribonuclease VII large subunit YP_004127243.1 2709206 R 596153 CDS YP_004127244.1 319763307 10104685 2710906..2711544 1 NC_014910.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_1556 MotA/TolQ/ExbB proton channel; mota/tolq/exbb proton channel 2711544 10104685 Alide_2625 Alicycliphilus denitrificans BC mota/tolq/exbb proton channel YP_004127244.1 2710906 D 596153 CDS YP_004127245.1 319763308 10104686 2711552..2711977 1 NC_014910.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dia:Dtpsy_1555 biopolymer transport protein ExbD/TolR; biopolymer transport protein exbd/tolr 2711977 10104686 Alide_2626 Alicycliphilus denitrificans BC biopolymer transport protein exbd/tolr YP_004127245.1 2711552 D 596153 CDS YP_004127246.1 319763309 10104687 2711982..2712980 1 NC_014910.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: ajs:Ajs_2305 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2712980 10104687 Alide_2627 Alicycliphilus denitrificans BC tetraacyldisaccharide 4'-kinase YP_004127246.1 2711982 D 596153 CDS YP_004127247.1 319763310 10104688 2712994..2713176 1 NC_014910.1 PFAM: protein of unknown function DUF343; KEGG: dia:Dtpsy_1553 protein of unknown function DUF343; hypothetical protein 2713176 10104688 Alide_2628 Alicycliphilus denitrificans BC hypothetical protein YP_004127247.1 2712994 D 596153 CDS YP_004127248.1 319763311 10104689 2713173..2713958 1 NC_014910.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: ajs:Ajs_2307 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 2713958 10104689 Alide_2629 Alicycliphilus denitrificans BC 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_004127248.1 2713173 D 596153 CDS YP_004127249.1 319763312 10104690 2714057..2714713 1 NC_014910.1 KEGG: dia:Dtpsy_1551 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain-containing protein; adenylate kinase 2714713 10104690 Alide_2630 Alicycliphilus denitrificans BC adenylate kinase YP_004127249.1 2714057 D 596153 CDS YP_004127250.1 319763313 10104691 complement(2714786..2715748) 1 NC_014910.1 KEGG: dia:Dtpsy_1550 asparaginase; PFAM: Asparaginase/glutaminase; asparaginase 2715748 10104691 Alide_2631 Alicycliphilus denitrificans BC asparaginase YP_004127250.1 2714786 R 596153 CDS YP_004127251.1 319763314 10104692 2715828..2716502 1 NC_014910.1 KEGG: dia:Dtpsy_1549 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; Peptidase S24/S26A/S26B, conserved region; lexa repressor 2716502 10104692 Alide_2632 Alicycliphilus denitrificans BC lexa repressor YP_004127251.1 2715828 D 596153 CDS YP_004127252.1 319763315 10104693 2716657..2717001 1 NC_014910.1 KEGG: ajs:Ajs_2311 hypothetical protein; hypothetical protein 2717001 10104693 Alide_2633 Alicycliphilus denitrificans BC hypothetical protein YP_004127252.1 2716657 D 596153 CDS YP_004127253.1 319763316 10104694 complement(2717009..2720989) 1 NC_014910.1 TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; helicase domain protein; protein of unknown function DUF1605; KEGG: dia:Dtpsy_1546 ATP-dependent helicase HrpA; SMART: DEAD-like helicase ; AAA ATPase; helicase domain protein; ATP-dependent helicase hrpa 2720989 10104694 Alide_2634 Alicycliphilus denitrificans BC ATP-dependent helicase hrpa YP_004127253.1 2717009 R 596153 CDS YP_004127254.1 319763317 10104695 complement(2721045..2722238) 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ajs:Ajs_2317 acetyl-CoA acetyltransferases; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 2722238 10104695 Alide_2635 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004127254.1 2721045 R 596153 CDS YP_004127255.1 319763318 10104696 complement(2722235..2723704) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_1541 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 2723704 10104696 Alide_2636 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004127255.1 2722235 R 596153 CDS YP_004127256.1 319763319 10104697 complement(2723707..2724291) 1 NC_014910.1 PFAM: BioY protein; KEGG: dia:Dtpsy_1540 BioY protein; bioy protein 2724291 10104697 Alide_2637 Alicycliphilus denitrificans BC bioy protein YP_004127256.1 2723707 R 596153 CDS YP_004127257.1 319763320 10104698 complement(2724329..2724922) 1 NC_014910.1 PFAM: cobalt transport protein; KEGG: ajs:Ajs_2320 cobalt transport protein; cobalt transport protein 2724922 10104698 Alide_2638 Alicycliphilus denitrificans BC cobalt transport protein YP_004127257.1 2724329 R 596153 CDS YP_004127258.1 319763321 10104699 complement(2724941..2725714) 1 NC_014910.1 KEGG: dia:Dtpsy_1538 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2725714 10104699 Alide_2639 Alicycliphilus denitrificans BC ABC transporter YP_004127258.1 2724941 R 596153 CDS YP_004127259.1 319763322 10104700 2726145..2726723 1 NC_014910.1 KEGG: bte:BTH_II1296 hypothetical protein; hypothetical protein 2726723 10104700 Alide_2640 Alicycliphilus denitrificans BC hypothetical protein YP_004127259.1 2726145 D 596153 CDS YP_004127260.1 319763323 10104701 2726770..2727204 1 NC_014910.1 KEGG: gdj:Gdia_1658 hypothetical protein; hypothetical protein 2727204 10104701 Alide_2641 Alicycliphilus denitrificans BC hypothetical protein YP_004127260.1 2726770 D 596153 CDS YP_004127261.1 319763324 10104702 2727258..2727674 1 NC_014910.1 TIGRFAM: lactoylglutathione lyase; KEGG: dia:Dtpsy_1870 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2727674 10104702 Alide_2642 Alicycliphilus denitrificans BC lactoylglutathione lyase YP_004127261.1 2727258 D 596153 CDS YP_004127262.1 319763325 10104703 complement(2727738..2729261) 1 NC_014910.1 PFAM: GTP-binding protein HSR1-related; KEGG: bpt:Bpet1383 hypothetical protein; GTP-binding protein hsr1-like protein 2729261 10104703 Alide_2643 Alicycliphilus denitrificans BC GTP-binding protein hsr1-like protein YP_004127262.1 2727738 R 596153 CDS YP_004127263.1 319763326 10104704 complement(2729258..2730520) 1 NC_014910.1 KEGG: bpt:Bpet1384 hypothetical protein; hypothetical protein 2730520 10104704 Alide_2644 Alicycliphilus denitrificans BC hypothetical protein YP_004127263.1 2729258 R 596153 CDS YP_004127264.1 319763327 10104705 complement(2730523..2731869) 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet1386 N-hydroxybenzoate transporter; major facilitator superfamily protein 2731869 10104705 Alide_2645 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004127264.1 2730523 R 596153 CDS YP_004127265.1 319763328 10104706 complement(2731901..2732881) 1 NC_014910.1 KEGG: dia:Dtpsy_0161 hypothetical protein; hypothetical protein 2732881 10104706 Alide_2646 Alicycliphilus denitrificans BC hypothetical protein YP_004127265.1 2731901 R 596153 CDS YP_004127266.1 319763329 10104707 complement(2732929..2733207) 1 NC_014910.1 TIGRFAM: muconolactone delta-isomerase; KEGG: bpt:Bpet1390 methylmuconolactone isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase 2733207 10104707 Alide_2647 Alicycliphilus denitrificans BC muconolactone delta-isomerase YP_004127266.1 2732929 R 596153 CDS YP_004127267.1 319763330 10104708 complement(2733228..2734031) 1 NC_014910.1 KEGG: bpt:Bpet1391 3-oxoadipate enol-lactone hydrolase; TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; 3-oxoadipate enol-lactonase 2734031 10104708 Alide_2648 Alicycliphilus denitrificans BC 3-oxoadipate enol-lactonase YP_004127267.1 2733228 R 596153 CDS YP_004127268.1 319763331 10104709 complement(2734043..2734816) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bpt:Bpet1396 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; short-chain dehydrogenase/reductase sdr 2734816 10104709 Alide_2649 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004127268.1 2734043 R 596153 CDS YP_004127269.1 319763332 10104710 complement(2734839..2735774) 1 NC_014910.1 KEGG: bpt:Bpet1400 catechol 1,2-dioxygenase; TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; catechol 1,2-dioxygenase 2735774 10104710 Alide_2650 Alicycliphilus denitrificans BC catechol 1,2-dioxygenase YP_004127269.1 2734839 R 596153 CDS YP_004127270.1 319763333 10104711 complement(2735818..2736993) 1 NC_014910.1 KEGG: bpt:Bpet1401 chloromuconate cycloisomerase; TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; muconate and chloromuconate cycloisomerase 2736993 10104711 Alide_2651 Alicycliphilus denitrificans BC muconate and chloromuconate cycloisomerase YP_004127270.1 2735818 R 596153 CDS YP_004127271.1 319763334 10104712 2737108..2738058 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet1402 transcriptional regulator CatR; LysR family transcriptional regulator 2738058 10104712 Alide_2652 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127271.1 2737108 D 596153 CDS YP_004127272.1 319763335 10104713 complement(2738123..2738761) 1 NC_014910.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: ajs:Ajs_2048 2-keto-3-deoxy-phosphogluconate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 2738761 10104713 Alide_2653 Alicycliphilus denitrificans BC 2-dehydro-3-deoxyphosphogluconate aldolase YP_004127272.1 2738123 R 596153 CDS YP_004127273.1 319763336 10104714 complement(2738752..2740569) 1 NC_014910.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: ajs:Ajs_2049 phosphogluconate dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; 6-phosphogluconate dehydratase 2740569 10104714 Alide_2654 Alicycliphilus denitrificans BC 6-phosphogluconate dehydratase YP_004127273.1 2738752 R 596153 CDS YP_004127274.1 319763337 10104715 complement(2740696..2741706) 1 NC_014910.1 KEGG: dia:Dtpsy_1873 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; trap dicarboxylate transporter subunit DctP 2741706 10104715 Alide_2655 Alicycliphilus denitrificans BC trap dicarboxylate transporter subunit DctP YP_004127274.1 2740696 R 596153 CDS YP_004127275.1 319763338 10104716 complement(2741763..2743043) 1 NC_014910.1 KEGG: dia:Dtpsy_1874 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; trap dicarboxylate transporter subunit DctM 2743043 10104716 Alide_2656 Alicycliphilus denitrificans BC trap dicarboxylate transporter subunit DctM YP_004127275.1 2741763 R 596153 CDS YP_004127276.1 319763339 10104717 complement(2743054..2743575) 1 NC_014910.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dia:Dtpsy_1875 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter dctq component 2743575 10104717 Alide_2657 Alicycliphilus denitrificans BC tripartite ATP-independent periplasmic transporter dctq component YP_004127276.1 2743054 R 596153 CDS YP_004127277.1 319763340 10104718 complement(2743572..2744126) 1 NC_014910.1 PFAM: shikimate kinase; manually curated; KEGG: ajs:Ajs_2053 carbohydrate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; thermoresistant glucokinase family carbohydrate kinase 2744126 10104718 Alide_2658 Alicycliphilus denitrificans BC thermoresistant glucokinase family carbohydrate kinase YP_004127277.1 2743572 R 596153 CDS YP_004127278.1 319763341 10104719 2744331..2745356 1 NC_014910.1 KEGG: ajs:Ajs_2054 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; periplasmic-binding protein/LacI transcriptional regulator 2745356 10104719 Alide_2659 Alicycliphilus denitrificans BC periplasmic-binding protein/LacI transcriptional regulator YP_004127278.1 2744331 D 596153 CDS YP_004127279.1 319763342 10104720 complement(2745402..2747750) 1 NC_014910.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: dia:Dtpsy_1896 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpA 2747750 10104720 Alide_2660 Alicycliphilus denitrificans BC ATP-dependent Clp protease ATP-binding subunit ClpA YP_004127279.1 2745402 R 596153 CDS YP_004127280.1 319763343 10104721 complement(2747810..2748172) 1 NC_014910.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dia:Dtpsy_1897 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent clp protease adaptor protein clps 2748172 10104721 Alide_2661 Alicycliphilus denitrificans BC ATP-dependent clp protease adaptor protein clps YP_004127280.1 2747810 R 596153 CDS YP_004127281.1 319763344 10104722 complement(2748232..2751780) 1 NC_014910.1 SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dia:Dtpsy_1898 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III subunit alpha 2751780 10104722 Alide_2662 Alicycliphilus denitrificans BC DNA polymerase III subunit alpha YP_004127281.1 2748232 R 596153 CDS YP_004127282.1 319763345 10104723 2751909..2752706 1 NC_014910.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dia:Dtpsy_1899 outer membrane assembly lipoprotein YfiO; outer membrane assembly lipoprotein yfio 2752706 10104723 Alide_2663 Alicycliphilus denitrificans BC outer membrane assembly lipoprotein yfio YP_004127282.1 2751909 D 596153 CDS YP_004127283.1 319763346 10104724 complement(2752669..2754741) 1 NC_014910.1 SMART: helicase c2; KEGG: ajs:Ajs_1828 helicase C2; helicase c2 2754741 10104724 Alide_2664 Alicycliphilus denitrificans BC helicase c2 YP_004127283.1 2752669 R 596153 CDS YP_004127284.1 319763347 10104725 2754859..2755662 1 NC_014910.1 SMART: protein phosphatase 2C domain protein; KEGG: dia:Dtpsy_1901 protein serine/threonine phosphatase; protein phosphatase 2C 2755662 10104725 Alide_2665 Alicycliphilus denitrificans BC protein phosphatase 2C YP_004127284.1 2754859 D 596153 CDS YP_004127285.1 319763348 10104726 complement(2755666..2756361) 1 NC_014910.1 KEGG: ajs:Ajs_1826 hypothetical protein; hypothetical protein 2756361 10104726 Alide_2666 Alicycliphilus denitrificans BC hypothetical protein YP_004127285.1 2755666 R 596153 CDS YP_004127286.1 319763349 10104727 complement(2756358..2757455) 1 NC_014910.1 PFAM: AFG1-family ATPase; KEGG: dia:Dtpsy_1903 AFG1-family ATPase; afg1-family atpase 2757455 10104727 Alide_2667 Alicycliphilus denitrificans BC afg1-family atpase YP_004127286.1 2756358 R 596153 CDS YP_004127287.1 319763350 10104728 complement(2757532..2758959) 1 NC_014910.1 KEGG: ajs:Ajs_1824 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 2758959 10104728 Alide_2668 Alicycliphilus denitrificans BC dihydrolipoamide dehydrogenase YP_004127287.1 2757532 R 596153 CDS YP_004127288.1 319763351 10104729 complement(2759045..2760301) 1 NC_014910.1 KEGG: dia:Dtpsy_1905 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; 2-oxoglutarate dehydrogenase E2 2760301 10104729 Alide_2669 Alicycliphilus denitrificans BC 2-oxoglutarate dehydrogenase E2 YP_004127288.1 2759045 R 596153 CDS YP_004127289.1 319763352 10104730 complement(2760354..2763230) 1 NC_014910.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; KEGG: ajs:Ajs_1822 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component; 2-oxoglutarate dehydrogenase E1 2763230 10104730 Alide_2670 Alicycliphilus denitrificans BC 2-oxoglutarate dehydrogenase E1 YP_004127289.1 2760354 R 596153 CDS YP_004127290.1 319763353 10104731 2763436..2764494 1 NC_014910.1 PFAM: protein of unknown function UPF0118; KEGG: dia:Dtpsy_1907 protein of unknown function UPF0118; hypothetical protein 2764494 10104731 Alide_2671 Alicycliphilus denitrificans BC hypothetical protein YP_004127290.1 2763436 D 596153 CDS YP_004127291.1 319763354 10104732 complement(2764562..2765545) 1 NC_014910.1 KEGG: dia:Dtpsy_1908 hypothetical protein; hypothetical protein 2765545 10104732 Alide_2672 Alicycliphilus denitrificans BC hypothetical protein YP_004127291.1 2764562 R 596153 CDS YP_004127292.1 319763355 10104733 complement(2765596..2765958) 1 NC_014910.1 KEGG: dia:Dtpsy_1909 hypothetical protein; hypothetical protein 2765958 10104733 Alide_2673 Alicycliphilus denitrificans BC hypothetical protein YP_004127292.1 2765596 R 596153 CDS YP_004127293.1 319763356 10104734 complement(2765973..2767325) 1 NC_014910.1 PFAM: protein of unknown function DUF1446; KEGG: dia:Dtpsy_1910 protein of unknown function DUF1446; hypothetical protein 2767325 10104734 Alide_2674 Alicycliphilus denitrificans BC hypothetical protein YP_004127293.1 2765973 R 596153 CDS YP_004127294.1 319763357 10104735 2767418..2768323 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_1817 LysR family transcriptional regulator; LysR family transcriptional regulator 2768323 10104735 Alide_2675 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127294.1 2767418 D 596153 CDS YP_004127295.1 319763358 10104736 2768461..2769327 1 NC_014910.1 PFAM: UspA domain-containing protein; KEGG: ajs:Ajs_1816 UspA domain-containing protein; uspa domain-containing protein 2769327 10104736 Alide_2676 Alicycliphilus denitrificans BC uspa domain-containing protein YP_004127295.1 2768461 D 596153 CDS YP_004127296.1 319763359 10104737 complement(2769347..2770984) 1 NC_014910.1 KEGG: dia:Dtpsy_1915 ABC transporter related; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; ABC transporter 2770984 10104737 Alide_2677 Alicycliphilus denitrificans BC ABC transporter YP_004127296.1 2769347 R 596153 CDS YP_004127297.1 319763360 10104738 complement(2770986..2772026) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_1916 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2772026 10104738 Alide_2678 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004127297.1 2770986 R 596153 CDS YP_004127298.1 319763361 10104739 complement(2772010..2773047) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1811 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2773047 10104739 Alide_2679 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004127298.1 2772010 R 596153 CDS YP_004127299.1 319763362 10104740 complement(2773065..2773526) 1 NC_014910.1 KEGG: dia:Dtpsy_2487 protein-S-isoprenylcysteine methyltransferase-like protein; protein-S-isoprenylcysteine methyltransferase 2773526 10104740 Alide_2680 Alicycliphilus denitrificans BC protein-S-isoprenylcysteine methyltransferase YP_004127299.1 2773065 R 596153 CDS YP_004127300.1 319763363 10104741 complement(2773572..2775395) 1 NC_014910.1 PFAM: extracellular solute-binding protein family 5; KEGG: dia:Dtpsy_1918 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein 2775395 10104741 Alide_2681 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127300.1 2773572 R 596153 CDS YP_004127301.1 319763364 10104742 2775441..2776241 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1919 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 2776241 10104742 Alide_2682 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004127301.1 2775441 D 596153 CDS YP_004127302.1 319763365 10104743 2776337..2777245 1 NC_014910.1 KEGG: rsc:RCFBP_10755 multidrug resistance efflux transporter; multidrug resistance efflux transporter 2777245 10104743 Alide_2683 Alicycliphilus denitrificans BC multidrug resistance efflux transporter YP_004127302.1 2776337 D 596153 CDS YP_004127303.1 319763366 10104744 complement(2777301..2777525) 1 NC_014910.1 PFAM: protein of unknown function DUF465; KEGG: cvi:CV_3311 hypothetical protein; hypothetical protein 2777525 10104744 Alide_2684 Alicycliphilus denitrificans BC hypothetical protein YP_004127303.1 2777301 R 596153 CDS YP_004127304.1 319763367 10104745 2777674..2778588 1 NC_014910.1 KEGG: dia:Dtpsy_2251 DNA ligase; PFAM: ATP dependent DNA ligase; DNA ligase (ATP) 2778588 10104745 Alide_2685 Alicycliphilus denitrificans BC DNA ligase (ATP) YP_004127304.1 2777674 D 596153 CDS YP_004127305.1 319763368 10104746 2778763..2779512 1 NC_014910.1 PFAM: Integral membrane protein TerC; KEGG: aav:Aave_4673 integral membrane protein TerC; integral membrane protein TerC 2779512 10104746 Alide_2686 Alicycliphilus denitrificans BC integral membrane protein TerC YP_004127305.1 2778763 D 596153 CDS YP_004127306.1 319763369 10104747 complement(2779573..2781933) 1 NC_014910.1 KEGG: ajs:Ajs_2762 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; lysine decarboxylase 2781933 10104747 Alide_2687 Alicycliphilus denitrificans BC lysine decarboxylase YP_004127306.1 2779573 R 596153 CDS YP_004127307.1 319763370 10104748 2782082..2782513 1 NC_014910.1 KEGG: dia:Dtpsy_2253 hypothetical protein; hypothetical protein 2782513 10104748 Alide_2688 Alicycliphilus denitrificans BC hypothetical protein YP_004127307.1 2782082 D 596153 CDS YP_004127308.1 319763371 10104749 2782583..2783500 1 NC_014910.1 KEGG: dia:Dtpsy_2254 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; hypothetical protein 2783500 10104749 Alide_2689 Alicycliphilus denitrificans BC hypothetical protein YP_004127308.1 2782583 D 596153 CDS YP_004127309.1 319763372 10104750 complement(2783497..2784399) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rfr:Rfer_0879 LysR family transcriptional regulator; LysR family transcriptional regulator 2784399 10104750 Alide_2690 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127309.1 2783497 R 596153 CDS YP_004127310.1 319763373 10104751 2784592..2786316 1 NC_014910.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: ajs:Ajs_2520 thiamine pyrophosphate protein; thiamine pyrophosphate tpp-binding domain-containing protein 2786316 10104751 Alide_2691 Alicycliphilus denitrificans BC thiamine pyrophosphate tpp-binding domain-containing protein YP_004127310.1 2784592 D 596153 CDS YP_004127311.1 319763374 10104753 2786959..2787291 1 NC_014910.1 PFAM: protein of unknown function UPF0060; KEGG: psa:PST_2099 inner membrane lipoprotein; hypothetical protein 2787291 10104753 Alide_2692 Alicycliphilus denitrificans BC hypothetical protein YP_004127311.1 2786959 D 596153 CDS YP_004127312.1 319763375 10104754 2787452..2788075 1 NC_014910.1 PFAM: integrase family protein; KEGG: mpt:Mpe_A1729 phage integrase family protein; integrase family protein 2788075 10104754 Alide_2693 Alicycliphilus denitrificans BC integrase family protein YP_004127312.1 2787452 D 596153 CDS YP_004127313.1 319763376 10104755 2788342..2789073 1 NC_014910.1 KEGG: bch:Bcen2424_3197 NADPH-dependent FMN reductase; TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; arsenical resistance protein arsh 2789073 10104755 Alide_2694 Alicycliphilus denitrificans BC arsenical resistance protein arsh YP_004127313.1 2788342 D 596153 CDS YP_004127314.1 319763377 10104756 2789090..2791894 1 NC_014910.1 KEGG: pol:Bpro_1191 ATPase, E1-E2 type; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; ATPase P 2791894 10104756 Alide_2695 Alicycliphilus denitrificans BC ATPase P YP_004127314.1 2789090 D 596153 CDS YP_004127315.1 319763378 10104757 2791936..2792454 1 NC_014910.1 KEGG: pna:Pnap_2845 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 family RNA polymerase sigma factor 2792454 10104757 Alide_2696 Alicycliphilus denitrificans BC sigma-70 family RNA polymerase sigma factor YP_004127315.1 2791936 D 596153 CDS YP_004127316.1 319763379 10104758 2792526..2792726 1 NC_014910.1 KEGG: shi:Shel_20950 haloacid dehalogenase superfamily enzyme, subfamily IA; hypothetical protein 2792726 10104758 Alide_2697 Alicycliphilus denitrificans BC hypothetical protein YP_004127316.1 2792526 D 596153 CDS YP_004127317.1 319763380 10104759 2792730..2793785 1 NC_014910.1 PFAM: permease; KEGG: app:CAP2UW1_2749 permease; permease 2793785 10104759 Alide_2698 Alicycliphilus denitrificans BC permease YP_004127317.1 2792730 D 596153 CDS YP_004127318.1 319763381 10104760 2793820..2794053 1 NC_014910.1 KEGG: reu:Reut_B4599 thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase and thioredoxin 2794053 10104760 Alide_2699 Alicycliphilus denitrificans BC thiol-disulfide isomerase and thioredoxin YP_004127318.1 2793820 D 596153 CDS YP_004127319.1 319763382 10104761 2794050..2794487 1 NC_014910.1 PFAM: OsmC family protein; KEGG: psa:PST_0230 redox protein, regulator of disulfide bond formation; osmc family protein 2794487 10104761 Alide_2700 Alicycliphilus denitrificans BC osmc family protein YP_004127319.1 2794050 D 596153 CDS YP_004127320.1 319763383 10104762 2794484..2795377 1 NC_014910.1 KEGG: rfr:Rfer_3644 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 2795377 10104762 Alide_2701 Alicycliphilus denitrificans BC cation diffusion facilitator family transporter YP_004127320.1 2794484 D 596153 CDS YP_004127321.1 319763384 10104763 2795378..2796661 1 NC_014910.1 KEGG: rfr:Rfer_3651 hypothetical protein; hypothetical protein 2796661 10104763 Alide_2702 Alicycliphilus denitrificans BC hypothetical protein YP_004127321.1 2795378 D 596153 CDS YP_004127322.1 319763385 10104764 2796670..2797731 1 NC_014910.1 PFAM: glutamine amidotransferase class-II; KEGG: pol:Bpro_1189 glutamine amidotransferase, class-II; glutamine amidotransferase class-ii 2797731 10104764 Alide_2703 Alicycliphilus denitrificans BC glutamine amidotransferase class-ii YP_004127322.1 2796670 D 596153 CDS YP_004127323.1 319763386 10104765 2797824..2798912 1 NC_014910.1 PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: nis:NIS_0087 hypothetical protein; oxidoreductase FAD-binding domain-containing protein 2798912 10104765 Alide_2704 Alicycliphilus denitrificans BC oxidoreductase FAD-binding domain-containing protein YP_004127323.1 2797824 D 596153 CDS YP_004127324.1 319763387 10104766 2798930..2800114 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: aeh:Mlg_2706 acetyl-CoA acetyltransferases; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 2800114 10104766 Alide_2705 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004127324.1 2798930 D 596153 CDS YP_004127325.1 319763388 10104767 2800126..2800359 1 NC_014910.1 KEGG: eba:ebA4129 hypothetical protein; hypothetical protein 2800359 10104767 Alide_2706 Alicycliphilus denitrificans BC hypothetical protein YP_004127325.1 2800126 D 596153 CDS YP_004127326.1 319763389 10104768 complement(2800366..2800605) 1 NC_014910.1 KEGG: lch:Lcho_1324 redox-active disulfide protein 2; redox-active disulfide protein 2 2800605 10104768 Alide_2707 Alicycliphilus denitrificans BC redox-active disulfide protein 2 YP_004127326.1 2800366 R 596153 CDS YP_004127327.1 319763390 10104769 complement(2800637..2802082) 1 NC_014910.1 PFAM: permease; KEGG: lch:Lcho_1323 permease; permease 2802082 10104769 Alide_2708 Alicycliphilus denitrificans BC permease YP_004127327.1 2800637 R 596153 CDS YP_004127328.1 319763391 10104770 complement(2802549..2803547) 1 NC_014910.1 manually curated; KEGG: ava:Ava_4263 hypothetical protein; hypothetical protein 2803547 10104770 Alide_2709 Alicycliphilus denitrificans BC hypothetical protein YP_004127328.1 2802549 R 596153 CDS YP_004127329.1 319763392 10104771 complement(2803827..2804381) 1 NC_014910.1 manually curated; KEGG: eum:ECUMN_2307 hypothetical protein; hypothetical protein 2804381 10104771 Alide_2710 Alicycliphilus denitrificans BC hypothetical protein YP_004127329.1 2803827 R 596153 CDS YP_004127330.1 319763393 10104772 complement(2804418..2805332) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 2805332 10104772 Alide_2711 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004127330.1 2804418 R 596153 CDS YP_004127331.1 319763394 10104773 complement(2805329..2805652) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 2805652 10104773 Alide_2712 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004127331.1 2805329 R 596153 CDS YP_004127332.1 319763395 10104774 complement(2806679..2808694) 1 NC_014910.1 TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; KEGG: ajs:Ajs_2233 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; DNA topoisomerase iii 2808694 10104774 Alide_2714 Alicycliphilus denitrificans BC DNA topoisomerase iii YP_004127332.1 2806679 R 596153 CDS YP_004127333.1 319763396 10104775 complement(2808984..2809367) 1 NC_014910.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein; single-strand binding protein/primosomal replication protein n 2809367 10104775 Alide_2715 Alicycliphilus denitrificans BC single-strand binding protein/primosomal replication protein n YP_004127333.1 2808984 R 596153 CDS YP_004127334.1 319763397 10104776 complement(2809364..2809909) 1 NC_014910.1 KEGG: rpf:Rpic12D_0642 hypothetical protein; hypothetical protein 2809909 10104776 Alide_2716 Alicycliphilus denitrificans BC hypothetical protein YP_004127334.1 2809364 R 596153 CDS YP_004127335.1 319763398 10104777 complement(2809906..2810691) 1 NC_014910.1 KEGG: rpf:Rpic12D_0641 hypothetical protein; TIGRFAM: Domain of unknown function DUF1845; PFAM: Domain of unknown function DUF1845; hypothetical protein 2810691 10104777 Alide_2717 Alicycliphilus denitrificans BC hypothetical protein YP_004127335.1 2809906 R 596153 CDS YP_004127336.1 319763399 10104778 complement(2810921..2812153) 1 NC_014910.1 KEGG: rpf:Rpic12D_0640 hypothetical protein; hypothetical protein 2812153 10104778 Alide_2718 Alicycliphilus denitrificans BC hypothetical protein YP_004127336.1 2810921 R 596153 CDS YP_004127337.1 319763400 10104779 complement(2812157..2812717) 1 NC_014910.1 KEGG: rpf:Rpic12D_0639 hypothetical protein; hypothetical protein 2812717 10104779 Alide_2719 Alicycliphilus denitrificans BC hypothetical protein YP_004127337.1 2812157 R 596153 CDS YP_004127338.1 319763401 10104780 complement(2812730..2814403) 1 NC_014910.1 KEGG: rpf:Rpic12D_0638 hypothetical protein; hypothetical protein 2814403 10104780 Alide_2720 Alicycliphilus denitrificans BC hypothetical protein YP_004127338.1 2812730 R 596153 CDS YP_004127339.1 319763402 10104781 complement(2814396..2814653) 1 NC_014910.1 KEGG: rpf:Rpic12D_0637 hypothetical protein; hypothetical protein 2814653 10104781 Alide_2721 Alicycliphilus denitrificans BC hypothetical protein YP_004127339.1 2814396 R 596153 CDS YP_004127340.1 319763403 10104782 complement(2814637..2815503) 1 NC_014910.1 KEGG: rpf:Rpic12D_0636 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 2815503 10104782 Alide_2722 Alicycliphilus denitrificans BC cobyrinic acid ac-diamide synthase YP_004127340.1 2814637 R 596153 CDS YP_004127341.1 319763404 10104783 complement(2815544..2815762) 1 NC_014910.1 PFAM: Prophage CP4-57 regulatory; KEGG: tmz:Tmz1t_1000 phage transcriptional regulator, AlpA; prophage cp4-57 regulatory 2815762 10104783 Alide_2723 Alicycliphilus denitrificans BC prophage cp4-57 regulatory YP_004127341.1 2815544 R 596153 CDS YP_004127342.1 319763405 10104784 complement(2815887..2816645) 1 NC_014910.1 KEGG: tmz:Tmz1t_1001 hypothetical protein; hypothetical protein 2816645 10104784 Alide_2724 Alicycliphilus denitrificans BC hypothetical protein YP_004127342.1 2815887 R 596153 CDS YP_004127343.1 319763406 10104785 complement(2817208..2818104) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpf:Rpic12D_0633 transcriptional regulator, LysR family; LysR family transcriptional regulator 2818104 10104785 Alide_2725 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127343.1 2817208 R 596153 CDS YP_004127344.1 319763407 10104786 complement(2818591..2821710) 1 NC_014910.1 KEGG: ajs:Ajs_1232 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, czca family 2821710 10104786 Alide_2726 Alicycliphilus denitrificans BC heavy metal efflux pump, czca family YP_004127344.1 2818591 R 596153 CDS YP_004127345.1 319763408 10104787 complement(2821707..2823191) 1 NC_014910.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: lch:Lcho_2049 RND family efflux transporter MFP subunit; efflux transporter, rnd family, mfp subunit 2823191 10104787 Alide_2727 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004127345.1 2821707 R 596153 CDS YP_004127346.1 319763409 10104788 complement(2823206..2824522) 1 NC_014910.1 KEGG: lch:Lcho_2050 CzcC family heavy metal RND efflux outer membrane protein; czcc family heavy metal rnd efflux outer membrane protein 2824522 10104788 Alide_2728 Alicycliphilus denitrificans BC czcc family heavy metal rnd efflux outer membrane protein YP_004127346.1 2823206 R 596153 CDS YP_004127347.1 319763410 10104789 complement(2824598..2825134) 1 NC_014910.1 KEGG: lch:Lcho_2051 hypothetical protein; hypothetical protein 2825134 10104789 Alide_2729 Alicycliphilus denitrificans BC hypothetical protein YP_004127347.1 2824598 R 596153 CDS YP_004127348.1 319763411 10104790 complement(2825178..2825435) 1 NC_014910.1 KEGG: maq:Maqu_0130 hypothetical protein; hypothetical protein 2825435 10104790 Alide_2730 Alicycliphilus denitrificans BC hypothetical protein YP_004127348.1 2825178 R 596153 CDS YP_004127349.1 319763412 10104791 complement(2825474..2827816) 1 NC_014910.1 KEGG: dia:Dtpsy_2191 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase 2827816 10104791 Alide_2731 Alicycliphilus denitrificans BC heavy metal translocating p-type atpase YP_004127349.1 2825474 R 596153 CDS YP_004127350.1 319763413 10104792 complement(2827953..2829815) 1 NC_014910.1 KEGG: ajs:Ajs_2709 hypothetical protein; hypothetical protein 2829815 10104792 Alide_2732 Alicycliphilus denitrificans BC hypothetical protein YP_004127350.1 2827953 R 596153 CDS YP_004127351.1 319763414 10104793 complement(2829925..2830428) 1 NC_014910.1 PFAM: cytochrome c class I; KEGG: dia:Dtpsy_2192 cytochrome c class I; cytochrome c class i 2830428 10104793 Alide_2733 Alicycliphilus denitrificans BC cytochrome c class i YP_004127351.1 2829925 R 596153 CDS YP_004127352.1 319763415 10104794 complement(2830484..2831131) 1 NC_014910.1 KEGG: dia:Dtpsy_2193 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 2831131 10104794 Alide_2734 Alicycliphilus denitrificans BC isoprenylcysteine carboxyl methyltransferase YP_004127352.1 2830484 R 596153 CDS YP_004127353.1 319763416 10104795 complement(2831136..2831414) 1 NC_014910.1 KEGG: dia:Dtpsy_2194 hypothetical protein; hypothetical protein 2831414 10104795 Alide_2735 Alicycliphilus denitrificans BC hypothetical protein YP_004127353.1 2831136 R 596153 CDS YP_004127354.1 319763417 10104796 complement(2831425..2831895) 1 NC_014910.1 KEGG: dia:Dtpsy_2195 hypothetical protein; hypothetical protein 2831895 10104796 Alide_2736 Alicycliphilus denitrificans BC hypothetical protein YP_004127354.1 2831425 R 596153 CDS YP_004127355.1 319763418 10104797 complement(2831971..2832312) 1 NC_014910.1 KEGG: ajs:Ajs_2667 hypothetical protein; hypothetical protein 2832312 10104797 Alide_2737 Alicycliphilus denitrificans BC hypothetical protein YP_004127355.1 2831971 R 596153 CDS YP_004127356.1 319763419 10104798 complement(2832367..2832873) 1 NC_014910.1 PFAM: blue (type 1) copper domain protein; KEGG: net:Neut_0023 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein 2832873 10104798 Alide_2738 Alicycliphilus denitrificans BC blue (type 1) copper domain-containing protein YP_004127356.1 2832367 R 596153 CDS YP_004127357.1 319763420 10104799 complement(2832896..2833774) 1 NC_014910.1 PFAM: copper resistance B precursor; KEGG: bmj:BMULJ_00902 copper resistance protein B; copper resistance b precursor 2833774 10104799 Alide_2739 Alicycliphilus denitrificans BC copper resistance b precursor YP_004127357.1 2832896 R 596153 CDS YP_004127358.1 319763421 10104800 complement(2834101..2835960) 1 NC_014910.1 KEGG: bmj:BMULJ_00903 copper resistance transmembrane protein; TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; copper-resistance protein, copa family 2835960 10104800 Alide_2740 Alicycliphilus denitrificans BC copper-resistance protein, copa family YP_004127358.1 2834101 R 596153 CDS YP_004127359.1 319763422 10104801 2836085..2836768 1 NC_014910.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: dia:Dtpsy_2201 two component heavy metal response transcriptional regulator, winged helix family; SMART: response regulator receiver; heavy metal response regulator 2836768 10104801 Alide_2741 Alicycliphilus denitrificans BC heavy metal response regulator YP_004127359.1 2836085 D 596153 CDS YP_004127360.1 319763423 10104802 2836769..2838172 1 NC_014910.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_2726 heavy metal sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; heavy metal sensor kinase 2838172 10104802 Alide_2742 Alicycliphilus denitrificans BC heavy metal sensor kinase YP_004127360.1 2836769 D 596153 CDS YP_004127361.1 319763424 10104803 2838304..2838651 1 NC_014910.1 KEGG: ajs:Ajs_2662 hypothetical protein; hypothetical protein 2838651 10104803 Alide_2743 Alicycliphilus denitrificans BC hypothetical protein YP_004127361.1 2838304 D 596153 CDS YP_004127362.1 319763425 10104804 2838807..2838920 1 NC_014910.1 KEGG: vap:Vapar_3675 protein of unknown function DUF411; hypothetical protein 2838920 10104804 Alide_2744 Alicycliphilus denitrificans BC hypothetical protein YP_004127362.1 2838807 D 596153 CDS YP_004127363.1 319763426 10104805 2839094..2840773 1 NC_014910.1 KEGG: net:Neut_0014 twin-arginine translocation pathway signal; PFAM: multicopper oxidase type 3; multicopper oxidase type 2; bilirubin oxidase 2840773 10104805 Alide_2745 Alicycliphilus denitrificans BC bilirubin oxidase YP_004127363.1 2839094 D 596153 CDS YP_004127364.1 319763427 10104806 2840858..2841181 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: aav:Aave_4117 transposase IS3/IS911 family protein; transposase is3/is911 family protein 2841181 10104806 Alide_2746 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004127364.1 2840858 D 596153 CDS YP_004127365.1 319763428 10104807 2841181..2842119 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: aav:Aave_4118 integrase catalytic subunit; integrase catalytic region protein 2842119 10104807 Alide_2747 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004127365.1 2841181 D 596153 CDS YP_004127366.1 319763429 10104808 2842258..2842500 1 NC_014910.1 KEGG: aca:ACP_0600 hypothetical protein; hypothetical protein 2842500 10104808 Alide_2748 Alicycliphilus denitrificans BC hypothetical protein YP_004127366.1 2842258 D 596153 CDS YP_004127367.1 319763430 10104809 complement(2842529..2843599) 1 NC_014910.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4649 hypothetical protein; hypothetical protein 2843599 10104809 Alide_2749 Alicycliphilus denitrificans BC hypothetical protein YP_004127367.1 2842529 R 596153 CDS YP_004127368.1 319763431 10104810 complement(2843641..2845644) 1 NC_014910.1 manually curated; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: xau:Xaut_4952 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase 2845644 10104810 Alide_2750 Alicycliphilus denitrificans BC heavy metal translocating p-type atpase YP_004127368.1 2843641 R 596153 CDS YP_004127369.1 319763432 10104811 complement(2845705..2845983) 1 NC_014910.1 PFAM: protein of unknown function DUF156; KEGG: pde:Pden_3352 hypothetical protein; hypothetical protein 2845983 10104811 Alide_2751 Alicycliphilus denitrificans BC hypothetical protein YP_004127369.1 2845705 R 596153 CDS YP_004127370.1 319763433 10104812 2846141..2847049 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpf:Rpic12D_0613 transcriptional regulator, LysR family; LysR family transcriptional regulator 2847049 10104812 Alide_2752 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127370.1 2846141 D 596153 CDS YP_004127371.1 319763434 10104813 complement(2847307..2847789) 1 NC_014910.1 KEGG: pol:Bpro_5021 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 2847789 10104813 Alide_2753 Alicycliphilus denitrificans BC helix-turn-helix domain-containing protein YP_004127371.1 2847307 R 596153 CDS YP_004127372.1 319763435 10104814 complement(2847887..2848222) 1 NC_014910.1 KEGG: pol:Bpro_4958 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 2848222 10104814 Alide_2754 Alicycliphilus denitrificans BC histone family protein DNA-binding protein YP_004127372.1 2847887 R 596153 CDS YP_004127373.1 319763436 10104815 2848397..2848534 1 NC_014910.1 KEGG: abb:ABBFA_001155 transcriptional regulatory protein QseB; transcriptional regulator QseB 2848534 10104815 Alide_2755 Alicycliphilus denitrificans BC transcriptional regulator QseB YP_004127373.1 2848397 D 596153 CDS YP_004127374.1 319763437 10104816 2848668..2848808 1 NC_014910.1 hypothetical protein 2848808 10104816 Alide_2756 Alicycliphilus denitrificans BC hypothetical protein YP_004127374.1 2848668 D 596153 CDS YP_004127375.1 319763438 10104817 2848877..2849878 1 NC_014910.1 KEGG: dia:Dtpsy_0973 hypothetical protein; hypothetical protein 2849878 10104817 Alide_2757 Alicycliphilus denitrificans BC hypothetical protein YP_004127375.1 2848877 D 596153 CDS YP_004127376.1 319763439 10104818 complement(2849895..2850851) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_2361 LysR family transcriptional regulator; LysR family transcriptional regulator 2850851 10104818 Alide_2758 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127376.1 2849895 R 596153 CDS YP_004127377.1 319763440 10104819 2850892..2851983 1 NC_014910.1 TIGRFAM: tartrate dehydrogenase; KEGG: aav:Aave_2087 tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 2851983 10104819 Alide_2759 Alicycliphilus denitrificans BC tartrate dehydrogenase YP_004127377.1 2850892 D 596153 CDS YP_004127378.1 319763441 10104820 2852155..2853174 1 NC_014910.1 PFAM: Patatin; KEGG: dac:Daci_3706 patatin; patatin 2853174 10104820 Alide_2760 Alicycliphilus denitrificans BC patatin YP_004127378.1 2852155 D 596153 CDS YP_004127379.1 319763442 10104821 complement(2853176..2854138) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_2084 LysR family transcriptional regulator; LysR family transcriptional regulator 2854138 10104821 Alide_2761 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127379.1 2853176 R 596153 CDS YP_004127380.1 319763443 10104822 2854238..2855227 1 NC_014910.1 KEGG: ctt:CtCNB1_3468 TctC; hypothetical protein 2855227 10104822 Alide_2762 Alicycliphilus denitrificans BC hypothetical protein YP_004127380.1 2854238 D 596153 CDS YP_004127381.1 319763444 10104823 2855224..2856747 1 NC_014910.1 KEGG: ctt:CtCNB1_3469 outer membrane protein precursor; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase 2856747 10104823 Alide_2763 Alicycliphilus denitrificans BC galactarate dehydratase YP_004127381.1 2855224 D 596153 CDS YP_004127382.1 319763445 10104824 2856814..2858283 1 NC_014910.1 KEGG: dac:Daci_2346 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; succinate-semialdehyde dehydrogenase 2858283 10104824 Alide_2764 Alicycliphilus denitrificans BC succinate-semialdehyde dehydrogenase YP_004127382.1 2856814 D 596153 CDS YP_004127383.1 319763446 10104825 2858290..2859093 1 NC_014910.1 KEGG: ctt:CtCNB1_3471 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 4-hydroxy-2-oxovalerate aldolase 2859093 10104825 Alide_2765 Alicycliphilus denitrificans BC 4-hydroxy-2-oxovalerate aldolase YP_004127383.1 2858290 D 596153 CDS YP_004127384.1 319763447 10104826 2859294..2859917 1 NC_014910.1 PFAM: protein of unknown function DUF938; KEGG: dia:Dtpsy_2352 protein of unknown function DUF938; hypothetical protein 2859917 10104826 Alide_2766 Alicycliphilus denitrificans BC hypothetical protein YP_004127384.1 2859294 D 596153 CDS YP_004127385.1 319763448 10104827 2859958..2860821 1 NC_014910.1 TIGRFAM: glutamate racemase; KEGG: ajs:Ajs_2867 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 2860821 10104827 Alide_2767 Alicycliphilus denitrificans BC glutamate racemase YP_004127385.1 2859958 D 596153 CDS YP_004127386.1 319763449 10104828 complement(2860818..2861639) 1 NC_014910.1 KEGG: aav:Aave_2959 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase; n-formylglutamate amidohydrolase 2861639 10104828 Alide_2768 Alicycliphilus denitrificans BC n-formylglutamate amidohydrolase YP_004127386.1 2860818 R 596153 CDS YP_004127387.1 319763450 10104829 complement(2861668..2863101) 1 NC_014910.1 KEGG: dac:Daci_0155 N-formimino-L-glutamate deiminase; TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; formiminoglutamate deiminase 2863101 10104829 Alide_2769 Alicycliphilus denitrificans BC formiminoglutamate deiminase YP_004127387.1 2861668 R 596153 CDS YP_004127388.1 319763451 10104830 complement(2863106..2864344) 1 NC_014910.1 TIGRFAM: imidazolonepropionase; KEGG: pol:Bpro_1035 imidazolonepropionase; PFAM: amidohydrolase; imidazolonepropionase 2864344 10104830 Alide_2770 Alicycliphilus denitrificans BC imidazolonepropionase YP_004127388.1 2863106 R 596153 CDS YP_004127389.1 319763452 10104831 complement(2864670..2865272) 1 NC_014910.1 PFAM: protein of unknown function DUF886; KEGG: aav:Aave_2962 hypothetical protein; hypothetical protein 2865272 10104831 Alide_2771 Alicycliphilus denitrificans BC hypothetical protein YP_004127389.1 2864670 R 596153 CDS YP_004127390.1 319763453 10104832 complement(2865278..2866060) 1 NC_014910.1 KEGG: pol:Bpro_1038 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2866060 10104832 Alide_2772 Alicycliphilus denitrificans BC ABC transporter YP_004127390.1 2865278 R 596153 CDS YP_004127391.1 319763454 10104833 complement(2866057..2866725) 1 NC_014910.1 KEGG: pol:Bpro_1039 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 2866725 10104833 Alide_2773 Alicycliphilus denitrificans BC polar amino acid ABC transporter inner membrane subunit YP_004127391.1 2866057 R 596153 CDS YP_004127392.1 319763455 10104834 complement(2866740..2867495) 1 NC_014910.1 KEGG: pol:Bpro_1040 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; ABC transporter substrate-binding protein 2867495 10104834 Alide_2774 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127392.1 2866740 R 596153 CDS YP_004127393.1 319763456 10104835 complement(2867539..2868318) 1 NC_014910.1 KEGG: pol:Bpro_1041 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 2868318 10104835 Alide_2775 Alicycliphilus denitrificans BC regulatory protein iclr YP_004127393.1 2867539 R 596153 CDS YP_004127394.1 319763457 10104836 complement(2868407..2870128) 1 NC_014910.1 TIGRFAM: urocanate hydratase; KEGG: dac:Daci_0150 urocanate hydratase; PFAM: Urocanase; urocanate hydratase 2870128 10104836 Alide_2776 Alicycliphilus denitrificans BC urocanate hydratase YP_004127394.1 2868407 R 596153 CDS YP_004127395.1 319763458 10104837 complement(2870172..2871650) 1 NC_014910.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: ctt:CtCNB1_0166 cytosine/purines/uracil permease; cytosine/purines uracil thiamine allantoin permease 2871650 10104837 Alide_2777 Alicycliphilus denitrificans BC cytosine/purines uracil thiamine allantoin permease YP_004127395.1 2870172 R 596153 CDS YP_004127396.1 319763459 10104838 2871793..2872518 1 NC_014910.1 TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; KEGG: ctt:CtCNB1_0165 transcriptional regulator, histidine; SMART: regulatory protein GntR HTH; histidine utilization repressor 2872518 10104838 Alide_2778 Alicycliphilus denitrificans BC histidine utilization repressor YP_004127396.1 2871793 D 596153 CDS YP_004127397.1 319763460 10104839 complement(2872519..2874108) 1 NC_014910.1 TIGRFAM: histidine ammonia-lyase; KEGG: aav:Aave_2965 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; histidine ammonia-lyase 2874108 10104839 Alide_2779 Alicycliphilus denitrificans BC histidine ammonia-lyase YP_004127397.1 2872519 R 596153 CDS YP_004127398.1 319763461 10104840 complement(2874172..2874954) 1 NC_014910.1 TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; KEGG: aav:Aave_2966 histidine utilization repressor; SMART: regulatory protein GntR HTH; histidine utilization repressor 2874954 10104840 Alide_2780 Alicycliphilus denitrificans BC histidine utilization repressor YP_004127398.1 2874172 R 596153 CDS YP_004127399.1 319763462 10104841 complement(2874971..2875753) 1 NC_014910.1 KEGG: aav:Aave_2967 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2875753 10104841 Alide_2781 Alicycliphilus denitrificans BC ABC transporter YP_004127399.1 2874971 R 596153 CDS YP_004127400.1 319763463 10104842 complement(2875753..2876592) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_2968 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2876592 10104842 Alide_2782 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004127400.1 2875753 R 596153 CDS YP_004127401.1 319763464 10104843 complement(2876618..2877583) 1 NC_014910.1 KEGG: aav:Aave_2969 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 2877583 10104843 Alide_2783 Alicycliphilus denitrificans BC glycine betaine ABC transporter substrate-binding protein YP_004127401.1 2876618 R 596153 CDS YP_004127402.1 319763465 10104844 complement(2877791..2878948) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_0142 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 2878948 10104844 Alide_2784 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127402.1 2877791 R 596153 CDS YP_004127403.1 319763466 10104845 complement(2878987..2880198) 1 NC_014910.1 KEGG: dac:Daci_0143 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 2880198 10104845 Alide_2785 Alicycliphilus denitrificans BC formyl-CoA transferase YP_004127403.1 2878987 R 596153 CDS YP_004127404.1 319763467 10104846 2880290..2881216 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_0157 L-carnitine dehydratase/bile acid-inducible; LysR family transcriptional regulator 2881216 10104846 Alide_2786 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127404.1 2880290 D 596153 CDS YP_004127405.1 319763468 10104847 complement(2881244..2882227) 1 NC_014910.1 KEGG: ajs:Ajs_2869 hypothetical protein; hypothetical protein 2882227 10104847 Alide_2787 Alicycliphilus denitrificans BC hypothetical protein YP_004127405.1 2881244 R 596153 CDS YP_004127406.1 319763469 10104848 complement(2882272..2883261) 1 NC_014910.1 KEGG: dia:Dtpsy_2357 hypothetical protein; hypothetical protein 2883261 10104848 Alide_2788 Alicycliphilus denitrificans BC hypothetical protein YP_004127406.1 2882272 R 596153 CDS YP_004127407.1 319763470 10104849 complement(2883304..2884275) 1 NC_014910.1 PFAM: pyruvate carboxyltransferase; KEGG: dia:Dtpsy_2358 pyruvate carboxyltransferase; pyruvate carboxyltransferase 2884275 10104849 Alide_2789 Alicycliphilus denitrificans BC pyruvate carboxyltransferase YP_004127407.1 2883304 R 596153 CDS YP_004127408.1 319763471 10104850 complement(2884272..2885477) 1 NC_014910.1 KEGG: dia:Dtpsy_2359 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 2885477 10104850 Alide_2790 Alicycliphilus denitrificans BC formyl-CoA transferase YP_004127408.1 2884272 R 596153 CDS YP_004127409.1 319763472 10104851 2885605..2886507 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_2873 LysR family transcriptional regulator; LysR family transcriptional regulator 2886507 10104851 Alide_2791 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127409.1 2885605 D 596153 CDS YP_004127410.1 319763473 10104852 2886504..2887586 1 NC_014910.1 KEGG: ajs:Ajs_2874 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP015557; PFAM: Uncharacterised conserved protein UCP015557; hypothetical protein 2887586 10104852 Alide_2792 Alicycliphilus denitrificans BC hypothetical protein YP_004127410.1 2886504 D 596153 CDS YP_004127411.1 319763474 10104853 2887746..2888300 1 NC_014910.1 KEGG: dia:Dtpsy_2362 elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein; translation elongation factor p 2888300 10104853 Alide_2793 Alicycliphilus denitrificans BC translation elongation factor p YP_004127411.1 2887746 D 596153 CDS YP_004127412.1 319763475 10104854 complement(2888374..2888832) 1 NC_014910.1 KEGG: ajs:Ajs_2876 hypothetical protein; hypothetical protein 2888832 10104854 Alide_2794 Alicycliphilus denitrificans BC hypothetical protein YP_004127412.1 2888374 R 596153 CDS YP_004127413.1 319763476 10104855 complement(2888953..2891037) 1 NC_014910.1 KEGG: dia:Dtpsy_2364 calcium-binding EF-hand-containing protein; TIGRFAM: sodium symporter protein; PFAM: Na+/solute symporter; sodium symporter protein 2891037 10104855 Alide_2795 Alicycliphilus denitrificans BC sodium symporter protein YP_004127413.1 2888953 R 596153 CDS YP_004127414.1 319763477 10104856 complement(2891030..2891347) 1 NC_014910.1 TIGRFAM: solute symporter protein; KEGG: ajs:Ajs_2878 hypothetical protein; solute symporter protein 2891347 10104856 Alide_2796 Alicycliphilus denitrificans BC solute symporter protein YP_004127414.1 2891030 R 596153 CDS YP_004127415.1 319763478 10104857 complement(2891364..2893754) 1 NC_014910.1 KEGG: dia:Dtpsy_2366 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; phosphoenolpyruvate synthase 2893754 10104857 Alide_2797 Alicycliphilus denitrificans BC phosphoenolpyruvate synthase YP_004127415.1 2891364 R 596153 CDS YP_004127416.1 319763479 10104858 2893977..2894807 1 NC_014910.1 PFAM: protein of unknown function DUF299; KEGG: dia:Dtpsy_2367 hypothetical protein; hypothetical protein 2894807 10104858 Alide_2798 Alicycliphilus denitrificans BC hypothetical protein YP_004127416.1 2893977 D 596153 CDS YP_004127417.1 319763480 10104859 complement(2894841..2897960) 1 NC_014910.1 KEGG: tmz:Tmz1t_2382 heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, czca family 2897960 10104859 Alide_2799 Alicycliphilus denitrificans BC heavy metal efflux pump, czca family YP_004127417.1 2894841 R 596153 CDS YP_004127418.1 319763481 10104860 complement(2897974..2899086) 1 NC_014910.1 KEGG: ajs:Ajs_1330 hypothetical protein; hypothetical protein 2899086 10104860 Alide_2800 Alicycliphilus denitrificans BC hypothetical protein YP_004127418.1 2897974 R 596153 CDS YP_004127419.1 319763482 10104861 complement(2899083..2899628) 1 NC_014910.1 KEGG: dia:Dtpsy_1144 hypothetical protein; hypothetical protein 2899628 10104861 Alide_2801 Alicycliphilus denitrificans BC hypothetical protein YP_004127419.1 2899083 R 596153 CDS YP_004127420.1 319763483 10104862 complement(2899736..2901004) 1 NC_014910.1 PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_1332 outer membrane efflux protein; outer membrane efflux protein 2901004 10104862 Alide_2802 Alicycliphilus denitrificans BC outer membrane efflux protein YP_004127420.1 2899736 R 596153 CDS YP_004127421.1 319763484 10104863 complement(2901186..2901563) 1 NC_014910.1 KEGG: mpt:Mpe_A2670 hypothetical protein; hypothetical protein 2901563 10104863 Alide_2803 Alicycliphilus denitrificans BC hypothetical protein YP_004127421.1 2901186 R 596153 CDS YP_004127422.1 319763485 10104864 complement(2901619..2903076) 1 NC_014910.1 KEGG: meh:M301_0051 catalase; PFAM: Catalase related subgroup; Catalase domain protein; catalase 2903076 10104864 Alide_2804 Alicycliphilus denitrificans BC catalase YP_004127422.1 2901619 R 596153 CDS YP_004127423.1 319763486 10104865 complement(2903145..2904713) 1 NC_014910.1 KEGG: aav:Aave_1376 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; alkyl hydroperoxide reductase 2904713 10104865 Alide_2805 Alicycliphilus denitrificans BC alkyl hydroperoxide reductase YP_004127423.1 2903145 R 596153 CDS YP_004127424.1 319763487 10104866 complement(2904809..2905384) 1 NC_014910.1 TIGRFAM: peroxiredoxin; KEGG: aav:Aave_1375 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; peroxiredoxin 2905384 10104866 Alide_2806 Alicycliphilus denitrificans BC peroxiredoxin YP_004127424.1 2904809 R 596153 CDS YP_004127425.1 319763488 10104867 2905600..2906076 1 NC_014910.1 KEGG: dia:Dtpsy_2370 bacterioferritin; TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; bacterioferritin 2906076 10104867 Alide_2807 Alicycliphilus denitrificans BC bacterioferritin YP_004127425.1 2905600 D 596153 CDS YP_004127426.1 319763489 10104868 2906303..2906632 1 NC_014910.1 PFAM: flagellar transcriptional activator; KEGG: ajs:Ajs_2884 flagellar transcriptional activator, FlhD subunit; flagellar transcriptional activator 2906632 10104868 Alide_2808 Alicycliphilus denitrificans BC flagellar transcriptional activator YP_004127426.1 2906303 D 596153 CDS YP_004127427.1 319763490 10104869 2906669..2907208 1 NC_014910.1 PFAM: flagellar transcriptional activator FlhC; KEGG: ajs:Ajs_2885 transcriptional activator FlhC; flagellar transcriptional activator flhc 2907208 10104869 Alide_2809 Alicycliphilus denitrificans BC flagellar transcriptional activator flhc YP_004127427.1 2906669 D 596153 CDS YP_004127428.1 319763491 10104870 complement(2907241..2910084) 1 NC_014910.1 KEGG: dia:Dtpsy_2376 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase, C-terminal region; phosphoenolpyruvate carboxylase 2910084 10104870 Alide_2810 Alicycliphilus denitrificans BC phosphoenolpyruvate carboxylase YP_004127428.1 2907241 R 596153 CDS YP_004127429.1 319763492 10104871 2910204..2911133 1 NC_014910.1 TIGRFAM: porphobilinogen deaminase; KEGG: dia:Dtpsy_2377 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 2911133 10104871 Alide_2811 Alicycliphilus denitrificans BC porphobilinogen deaminase YP_004127429.1 2910204 D 596153 CDS YP_004127430.1 319763493 10104872 2911127..2911951 1 NC_014910.1 KEGG: ajs:Ajs_2891 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 2911951 10104872 Alide_2812 Alicycliphilus denitrificans BC uroporphyrinogen-III synthase YP_004127430.1 2911127 D 596153 CDS YP_004127431.1 319763494 10104873 2911941..2913020 1 NC_014910.1 PFAM: protein of unknown function DUF513 hemX; KEGG: ajs:Ajs_2892 protein of unknown function DUF513, HemX; hypothetical protein 2913020 10104873 Alide_2813 Alicycliphilus denitrificans BC hypothetical protein YP_004127431.1 2911941 D 596153 CDS YP_004127432.1 319763495 10104874 2913046..2914335 1 NC_014910.1 PFAM: HemY domain protein; KEGG: ajs:Ajs_2893 HemY domain-containing protein; HemY domain-containing protein 2914335 10104874 Alide_2814 Alicycliphilus denitrificans BC HemY domain-containing protein YP_004127432.1 2913046 D 596153 CDS YP_004127433.1 319763496 10104875 2914589..2916244 1 NC_014910.1 KEGG: net:Neut_1582 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome-c oxidase 2916244 10104875 Alide_2815 Alicycliphilus denitrificans BC cytochrome-c oxidase YP_004127433.1 2914589 D 596153 CDS YP_004127434.1 319763497 10104876 2916234..2916881 1 NC_014910.1 PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: net:Neut_1583 cytochrome c oxidase, mono-heme subunit/FixO; cytochrome c oxidase mono-heme subunit/fixo 2916881 10104876 Alide_2816 Alicycliphilus denitrificans BC cytochrome c oxidase mono-heme subunit/fixo YP_004127434.1 2916234 D 596153 CDS YP_004127435.1 319763498 10104877 2916895..2917488 1 NC_014910.1 PFAM: cytochrome c class I; KEGG: net:Neut_1584 cytochrome c, class I; cytochrome c class i 2917488 10104877 Alide_2817 Alicycliphilus denitrificans BC cytochrome c class i YP_004127435.1 2916895 D 596153 CDS YP_004127436.1 319763499 10104878 2917496..2918131 1 NC_014910.1 KEGG: net:Neut_1585 hypothetical protein; hypothetical protein 2918131 10104878 Alide_2818 Alicycliphilus denitrificans BC hypothetical protein YP_004127436.1 2917496 D 596153 CDS YP_004127437.1 319763500 10104879 2918128..2918733 1 NC_014910.1 KEGG: pol:Bpro_1263 hypothetical protein; hypothetical protein 2918733 10104879 Alide_2819 Alicycliphilus denitrificans BC hypothetical protein YP_004127437.1 2918128 D 596153 CDS YP_004127438.1 319763501 10104880 2918879..2921767 1 NC_014910.1 KEGG: dia:Dtpsy_2382 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; valyl-tRNA synthetase 2921767 10104880 Alide_2820 Alicycliphilus denitrificans BC valyl-tRNA synthetase YP_004127438.1 2918879 D 596153 CDS YP_004127439.1 319763502 10104881 2921875..2922759 1 NC_014910.1 KEGG: dia:Dtpsy_2383 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 2922759 10104881 Alide_2821 Alicycliphilus denitrificans BC UTP-glucose-1-phosphate uridylyltransferase YP_004127439.1 2921875 D 596153 CDS YP_004127440.1 319763503 10104882 complement(2922890..2923117) 1 NC_014910.1 PFAM: SirA-like domain-containing protein; KEGG: dia:Dtpsy_2384 SirA family protein; sira-like domain-containing protein 2923117 10104882 Alide_2822 Alicycliphilus denitrificans BC sira-like domain-containing protein YP_004127440.1 2922890 R 596153 CDS YP_004127441.1 319763504 10104883 complement(2923123..2923686) 1 NC_014910.1 PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_2385 NUDIX hydrolase; nudix hydrolase 2923686 10104883 Alide_2823 Alicycliphilus denitrificans BC nudix hydrolase YP_004127441.1 2923123 R 596153 CDS YP_004127442.1 319763505 10104884 complement(2923692..2924597) 1 NC_014910.1 KEGG: dia:Dtpsy_2386 cysteine synthase B; TIGRFAM: cysteine synthase B; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; cysteine synthase B 2924597 10104884 Alide_2824 Alicycliphilus denitrificans BC cysteine synthase B YP_004127442.1 2923692 R 596153 CDS YP_004127443.1 319763506 10104885 complement(2925208..2925450) 1 NC_014910.1 PFAM: Protein of unknown function DUF2274; KEGG: ajs:Ajs_2901 hypothetical protein; hypothetical protein 2925450 10104885 Alide_2825 Alicycliphilus denitrificans BC hypothetical protein YP_004127443.1 2925208 R 596153 CDS YP_004127444.1 319763507 10104886 complement(2925447..2926718) 1 NC_014910.1 PFAM: conjugation TrbI family protein; KEGG: rpi:Rpic_2653 conjugation TrbI family protein; conjugation trbi family protein 2926718 10104886 Alide_2826 Alicycliphilus denitrificans BC conjugation trbi family protein YP_004127444.1 2925447 R 596153 CDS YP_004127445.1 319763508 10104887 complement(2926721..2927713) 1 NC_014910.1 KEGG: dia:Dtpsy_3498 P-type conjugative transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; p-type conjugative transfer protein trbg 2927713 10104887 Alide_2827 Alicycliphilus denitrificans BC p-type conjugative transfer protein trbg YP_004127445.1 2926721 R 596153 CDS YP_004127446.1 319763509 10104888 complement(2927710..2928414) 1 NC_014910.1 KEGG: dia:Dtpsy_3499 conjugal transfer protein TrbF; conjugal transfer protein trbf 2928414 10104888 Alide_2828 Alicycliphilus denitrificans BC conjugal transfer protein trbf YP_004127446.1 2927710 R 596153 CDS YP_004127447.1 319763510 10104889 complement(2928433..2929785) 1 NC_014910.1 KEGG: dia:Dtpsy_3500 conjugal transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; p-type conjugative transfer protein trbl 2929785 10104889 Alide_2829 Alicycliphilus denitrificans BC p-type conjugative transfer protein trbl YP_004127447.1 2928433 R 596153 CDS YP_004127448.1 319763511 10104890 complement(2929782..2930096) 1 NC_014910.1 KEGG: dac:Daci_2694 lipoprotein; lipoprotein 2930096 10104890 Alide_2830 Alicycliphilus denitrificans BC lipoprotein YP_004127448.1 2929782 R 596153 CDS YP_004127449.1 319763512 10104891 complement(2930108..2930863) 1 NC_014910.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: dia:Dtpsy_3502 conjugal transfer protein TrbJ; p-type conjugative transfer protein trbj 2930863 10104891 Alide_2831 Alicycliphilus denitrificans BC p-type conjugative transfer protein trbj YP_004127449.1 2930108 R 596153 CDS YP_004127450.1 319763513 10104892 complement(2930860..2933319) 1 NC_014910.1 KEGG: tgr:Tgr7_1898 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase; type IV transport system protein VirB 2933319 10104892 Alide_2832 Alicycliphilus denitrificans BC type IV transport system protein VirB YP_004127450.1 2930860 R 596153 CDS YP_004127451.1 319763514 10104893 complement(2933334..2933606) 1 NC_014910.1 KEGG: rme:Rmet_1343 conjugal transfer TrbD transmembrane protein; conjugal transfer trbd transmembrane protein 2933606 10104893 Alide_2833 Alicycliphilus denitrificans BC conjugal transfer trbd transmembrane protein YP_004127451.1 2933334 R 596153 CDS YP_004127452.1 319763515 10104894 complement(2933603..2933989) 1 NC_014910.1 PFAM: Conjugal transfer protein TrbC; KEGG: dia:Dtpsy_3505 conjugal transfer protein TrbC; conjugal transfer protein trbc 2933989 10104894 Alide_2834 Alicycliphilus denitrificans BC conjugal transfer protein trbc YP_004127452.1 2933603 R 596153 CDS YP_004127453.1 319763516 10104895 complement(2933986..2935038) 1 NC_014910.1 KEGG: sml:Smlt1291 conjugal transfer protein; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; p-type conjugative transfer atpase trbb 2935038 10104895 Alide_2835 Alicycliphilus denitrificans BC p-type conjugative transfer atpase trbb YP_004127453.1 2933986 R 596153 CDS YP_004127454.1 319763517 10104896 complement(2935035..2935499) 1 NC_014910.1 KEGG: dac:Daci_2700 CopG/DNA-binding domain-containing protein; copg/DNA-binding domain-containing protein 2935499 10104896 Alide_2836 Alicycliphilus denitrificans BC copg/DNA-binding domain-containing protein YP_004127454.1 2935035 R 596153 CDS YP_004127455.1 319763518 10104897 complement(2935496..2937502) 1 NC_014910.1 PFAM: TRAG family protein; KEGG: dac:Daci_2701 conjugal transfer coupling protein TraG; trag family protein 2937502 10104897 Alide_2837 Alicycliphilus denitrificans BC trag family protein YP_004127455.1 2935496 R 596153 CDS YP_004127456.1 319763519 10104898 complement(2937746..2937973) 1 NC_014910.1 KEGG: dia:Dtpsy_3509 hypothetical protein; hypothetical protein 2937973 10104898 Alide_2838 Alicycliphilus denitrificans BC hypothetical protein YP_004127456.1 2937746 R 596153 CDS YP_004127457.1 319763520 10104899 complement(2937987..2938913) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1314 transcriptional regulator, LysR family; LysR family transcriptional regulator 2938913 10104899 Alide_2839 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127457.1 2937987 R 596153 CDS YP_004127458.1 319763521 10104900 complement(2939105..2941129) 1 NC_014910.1 manually curated; KEGG: dia:Dtpsy_1313 hypothetical protein; hypothetical protein 2941129 10104900 Alide_2840 Alicycliphilus denitrificans BC hypothetical protein YP_004127458.1 2939105 R 596153 CDS YP_004127459.1 319763522 10104901 complement(2941203..2942177) 1 NC_014910.1 manually curated; KEGG: dia:Dtpsy_1312 phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase; phosphate acetyltransferase 2942177 10104901 Alide_2841 Alicycliphilus denitrificans BC phosphate acetyltransferase YP_004127459.1 2941203 R 596153 CDS YP_004127460.1 319763523 10104902 complement(2942170..2942733) 1 NC_014910.1 PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_1311 UspA domain protein; uspa domain-containing protein 2942733 10104902 Alide_2842 Alicycliphilus denitrificans BC uspa domain-containing protein YP_004127460.1 2942170 R 596153 CDS YP_004127461.1 319763524 10104903 complement(2942802..2943548) 1 NC_014910.1 KEGG: dia:Dtpsy_1310 acetoacetyl-CoA reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; acetoacetyl-CoA reductase 2943548 10104903 Alide_2843 Alicycliphilus denitrificans BC acetoacetyl-CoA reductase YP_004127461.1 2942802 R 596153 CDS YP_004127462.1 319763525 10104904 complement(2943559..2944002) 1 NC_014910.1 KEGG: dia:Dtpsy_1309 hypothetical protein; hypothetical protein 2944002 10104904 Alide_2844 Alicycliphilus denitrificans BC hypothetical protein YP_004127462.1 2943559 R 596153 CDS YP_004127463.1 319763526 10104905 complement(2944110..2945867) 1 NC_014910.1 PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: dia:Dtpsy_1308 poly-beta-hydroxybutyrate polymerase domain protein; poly-beta-hydroxybutyrate polymerase domain-containing protein 2945867 10104905 Alide_2845 Alicycliphilus denitrificans BC poly-beta-hydroxybutyrate polymerase domain-containing protein YP_004127463.1 2944110 R 596153 CDS YP_004127464.1 319763527 10104906 2946189..2946797 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: dia:Dtpsy_1307 transcriptional regulator, TetR family; regulatory protein tetr 2946797 10104906 Alide_2846 Alicycliphilus denitrificans BC regulatory protein tetr YP_004127464.1 2946189 D 596153 CDS YP_004127465.1 319763528 10104907 2946866..2947285 1 NC_014910.1 KEGG: dia:Dtpsy_1306 hypothetical protein; hypothetical protein 2947285 10104907 Alide_2847 Alicycliphilus denitrificans BC hypothetical protein YP_004127465.1 2946866 D 596153 CDS YP_004127466.1 319763529 10104908 2947313..2948353 1 NC_014910.1 PFAM: secretion protein HlyD family protein; KEGG: dia:Dtpsy_1305 hypothetical protein; secretion protein hlyd family protein 2948353 10104908 Alide_2848 Alicycliphilus denitrificans BC secretion protein hlyd family protein YP_004127466.1 2947313 D 596153 CDS YP_004127467.1 319763530 10104909 2948355..2950127 1 NC_014910.1 KEGG: dia:Dtpsy_1304 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2950127 10104909 Alide_2849 Alicycliphilus denitrificans BC ABC transporter YP_004127467.1 2948355 D 596153 CDS YP_004127468.1 319763531 10104910 2950124..2951293 1 NC_014910.1 PFAM: ABC transporter; KEGG: dia:Dtpsy_1303 ABC transporter; ABC transporter 2951293 10104910 Alide_2850 Alicycliphilus denitrificans BC ABC transporter YP_004127468.1 2950124 D 596153 CDS YP_004127469.1 319763532 10104911 2951298..2952416 1 NC_014910.1 PFAM: ABC transporter; KEGG: dia:Dtpsy_1302 ABC transporter; ABC transporter 2952416 10104911 Alide_2851 Alicycliphilus denitrificans BC ABC transporter YP_004127469.1 2951298 D 596153 CDS YP_004127470.1 319763533 10104912 2952413..2954062 1 NC_014910.1 KEGG: dia:Dtpsy_1301 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family 2954062 10104912 Alide_2852 Alicycliphilus denitrificans BC rnd efflux system, outer membrane lipoprotein, nodt family YP_004127470.1 2952413 D 596153 CDS YP_004127471.1 319763534 10104913 2954059..2955210 1 NC_014910.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: eba:ebA4623 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase 2955210 10104913 Alide_2853 Alicycliphilus denitrificans BC iron-containing alcohol dehydrogenase YP_004127471.1 2954059 D 596153 CDS YP_004127472.1 319763535 10104914 2955264..2955473 1 NC_014910.1 KEGG: dia:Dtpsy_1300 hypothetical protein; hypothetical protein 2955473 10104914 Alide_2854 Alicycliphilus denitrificans BC hypothetical protein YP_004127472.1 2955264 D 596153 CDS YP_004127473.1 319763536 10104915 2955481..2956893 1 NC_014910.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dia:Dtpsy_1299 beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase 2956893 10104915 Alide_2855 Alicycliphilus denitrificans BC RNA-metabolising metallo-beta-lactamase YP_004127473.1 2955481 D 596153 CDS YP_004127474.1 319763537 10104916 2956890..2957756 1 NC_014910.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: dia:Dtpsy_1298 hypothetical protein; hypothetical protein 2957756 10104916 Alide_2856 Alicycliphilus denitrificans BC hypothetical protein YP_004127474.1 2956890 D 596153 CDS YP_004127475.1 319763538 10104917 2957753..2958952 1 NC_014910.1 PFAM: Protein of unknown function DUF2219; KEGG: dia:Dtpsy_1297 hypothetical protein; hypothetical protein 2958952 10104917 Alide_2857 Alicycliphilus denitrificans BC hypothetical protein YP_004127475.1 2957753 D 596153 CDS YP_004127476.1 319763539 10104918 2959160..2959474 1 NC_014910.1 KEGG: dia:Dtpsy_1296 hypothetical protein; hypothetical protein 2959474 10104918 Alide_2858 Alicycliphilus denitrificans BC hypothetical protein YP_004127476.1 2959160 D 596153 CDS YP_004127477.1 319763540 10104919 2959514..2960722 1 NC_014910.1 TIGRFAM: acetate kinase; KEGG: dia:Dtpsy_1295 acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 2960722 10104919 Alide_2859 Alicycliphilus denitrificans BC acetate kinase YP_004127477.1 2959514 D 596153 CDS YP_004127478.1 319763541 10104920 2960806..2963178 1 NC_014910.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase-like; KEGG: dia:Dtpsy_1294 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; d-xylulose 5-phosphate/d-fructose 6-phosphate phosphoketolase 2963178 10104920 Alide_2860 Alicycliphilus denitrificans BC d-xylulose 5-phosphate/d-fructose 6-phosphate phosphoketolase YP_004127478.1 2960806 D 596153 CDS YP_004127479.1 319763542 10104922 complement(2963691..2964170) 1 NC_014910.1 KEGG: ajs:Ajs_2417 hypothetical protein; hypothetical protein 2964170 10104922 Alide_2862 Alicycliphilus denitrificans BC hypothetical protein YP_004127479.1 2963691 R 596153 CDS YP_004127480.1 319763543 10104923 complement(2964294..2964755) 1 NC_014910.1 KEGG: dia:Dtpsy_1431 hypothetical protein; hypothetical protein 2964755 10104923 Alide_2863 Alicycliphilus denitrificans BC hypothetical protein YP_004127480.1 2964294 R 596153 CDS YP_004127481.1 319763544 10104924 complement(2964752..2965219) 1 NC_014910.1 KEGG: dia:Dtpsy_1432 transmembrane anti-sigma factor; transmembrane anti-sigma factor 2965219 10104924 Alide_2864 Alicycliphilus denitrificans BC transmembrane anti-sigma factor YP_004127481.1 2964752 R 596153 CDS YP_004127482.1 319763545 10104925 complement(2965235..2965789) 1 NC_014910.1 KEGG: dia:Dtpsy_1433 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 family RNA polymerase sigma factor 2965789 10104925 Alide_2865 Alicycliphilus denitrificans BC sigma-70 family RNA polymerase sigma factor YP_004127482.1 2965235 R 596153 CDS YP_004127483.1 319763546 10104926 2966048..2966458 1 NC_014910.1 KEGG: dia:Dtpsy_3434 hypothetical protein; hypothetical protein 2966458 10104926 Alide_2866 Alicycliphilus denitrificans BC hypothetical protein YP_004127483.1 2966048 D 596153 CDS YP_004127484.1 319763547 10104927 2966488..2966964 1 NC_014910.1 KEGG: dia:Dtpsy_3435 hypothetical protein; hypothetical protein 2966964 10104927 Alide_2867 Alicycliphilus denitrificans BC hypothetical protein YP_004127484.1 2966488 D 596153 CDS YP_004127485.1 319763548 10104928 2966975..2969179 1 NC_014910.1 PFAM: flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ajs:Ajs_4088 oxidoreductase FAD/NAD(P)-binding subunit; flavodoxin/nitric oxide synthase 2969179 10104928 Alide_2868 Alicycliphilus denitrificans BC flavodoxin/nitric oxide synthase YP_004127485.1 2966975 D 596153 CDS YP_004127486.1 319763549 10104929 2969184..2970137 1 NC_014910.1 KEGG: dia:Dtpsy_3437 ApbE family lipoprotein; manually curated; PFAM: ApbE family lipoprotein; apbe family lipoprotein 2970137 10104929 Alide_2869 Alicycliphilus denitrificans BC apbe family lipoprotein YP_004127486.1 2969184 D 596153 CDS YP_004127487.1 319763550 10104930 2970236..2970745 1 NC_014910.1 KEGG: dia:Dtpsy_3438 hypothetical protein; hypothetical protein 2970745 10104930 Alide_2870 Alicycliphilus denitrificans BC hypothetical protein YP_004127487.1 2970236 D 596153 CDS YP_004127488.1 319763551 10104931 2970884..2971459 1 NC_014910.1 KEGG: psa:PST_0904 cytochrome b561; cytochrome b561 2971459 10104931 Alide_2871 Alicycliphilus denitrificans BC cytochrome b561 YP_004127488.1 2970884 D 596153 CDS YP_004127489.1 319763552 10104932 2971556..2972320 1 NC_014910.1 KEGG: sti:Sthe_3401 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; cyclic nucleotide-binding protein 2972320 10104932 Alide_2872 Alicycliphilus denitrificans BC cyclic nucleotide-binding protein YP_004127489.1 2971556 D 596153 CDS YP_004127490.1 319763553 10104933 2972431..2972661 1 NC_014910.1 PFAM: Heavy metal transport/detoxification protein; KEGG: mlu:Mlut_09570 copper chaperone; heavy metal transport/detoxification protein 2972661 10104933 Alide_2873 Alicycliphilus denitrificans BC heavy metal transport/detoxification protein YP_004127490.1 2972431 D 596153 CDS YP_004127491.1 319763554 10104934 2972768..2974687 1 NC_014910.1 KEGG: nca:Noca_1662 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase 2974687 10104934 Alide_2874 Alicycliphilus denitrificans BC heavy metal translocating p-type atpase YP_004127491.1 2972768 D 596153 CDS YP_004127492.1 319763555 10104935 complement(2974882..2976867) 1 NC_014910.1 KEGG: dac:Daci_0453 hypothetical protein; hypothetical protein 2976867 10104935 Alide_2875 Alicycliphilus denitrificans BC hypothetical protein YP_004127492.1 2974882 R 596153 CDS YP_004127493.1 319763556 10104936 complement(2977316..2977903) 1 NC_014910.1 PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase; peptidase s26 2977903 10104936 Alide_2876 Alicycliphilus denitrificans BC peptidase s26 YP_004127493.1 2977316 R 596153 CDS YP_004127494.1 319763557 10104937 complement(2977900..2978445) 1 NC_014910.1 KEGG: rme:Rmet_1257 hypothetical protein; hypothetical protein 2978445 10104937 Alide_2877 Alicycliphilus denitrificans BC hypothetical protein YP_004127494.1 2977900 R 596153 CDS YP_004127495.1 319763558 10104939 complement(2978601..2979515) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 2979515 10104939 Alide_2879 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004127495.1 2978601 R 596153 CDS YP_004127496.1 319763559 10104940 complement(2979512..2979835) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 2979835 10104940 Alide_2880 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004127496.1 2979512 R 596153 CDS YP_004127497.1 319763560 10104941 complement(2979866..2980054) 1 NC_014910.1 KEGG: bte:BTH_I0807 integrase protein; integrase protein 2980054 10104941 Alide_2881 Alicycliphilus denitrificans BC integrase protein YP_004127497.1 2979866 R 596153 CDS YP_004127498.1 319763561 10104943 2980531..2981367 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 2981367 10104943 Alide_2883 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004127498.1 2980531 D 596153 CDS YP_004127499.1 319763562 10104944 2981510..2982103 1 NC_014910.1 KEGG: azc:AZC_4590 transcriptional regulator; transcriptional regulator 2982103 10104944 Alide_2884 Alicycliphilus denitrificans BC transcriptional regulator YP_004127499.1 2981510 D 596153 CDS YP_004127500.1 319763563 10104945 complement(2982153..2983682) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rlt:Rleg2_6334 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 2983682 10104945 Alide_2885 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004127500.1 2982153 R 596153 CDS YP_004127501.1 319763564 10104946 complement(2983733..2984692) 1 NC_014910.1 PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_5269 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 2984692 10104946 Alide_2886 Alicycliphilus denitrificans BC pyruvate carboxyltransferase YP_004127501.1 2983733 R 596153 CDS YP_004127502.1 319763565 10104947 complement(2984708..2986714) 1 NC_014910.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: pol:Bpro_5270 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase l chain ATP-binding protein 2986714 10104947 Alide_2887 Alicycliphilus denitrificans BC carbamoyl-phosphate synthase l chain ATP-binding protein YP_004127502.1 2984708 R 596153 CDS YP_004127503.1 319763566 10104948 complement(2986723..2988303) 1 NC_014910.1 KEGG: pol:Bpro_5271 carboxyl transferase; PFAM: carboxyl transferase; methylcrotonoyl-CoA carboxylase 2988303 10104948 Alide_2888 Alicycliphilus denitrificans BC methylcrotonoyl-CoA carboxylase YP_004127503.1 2986723 R 596153 CDS YP_004127504.1 319763567 10104949 complement(2988323..2989684) 1 NC_014910.1 KEGG: rxy:Rxyl_1851 phenylacetate-CoA ligase; phenylacetate--CoA ligase 2989684 10104949 Alide_2889 Alicycliphilus denitrificans BC phenylacetate--CoA ligase YP_004127504.1 2988323 R 596153 CDS YP_004127505.1 319763568 10104950 2989784..2990569 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_3871 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 2990569 10104950 Alide_2890 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004127505.1 2989784 D 596153 CDS YP_004127506.1 319763569 10104951 2990696..2991916 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: mno:Mnod_4450 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 2991916 10104951 Alide_2891 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127506.1 2990696 D 596153 CDS YP_004127507.1 319763570 10104952 complement(2992277..2994199) 1 NC_014910.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dia:Dtpsy_1188 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2994199 10104952 Alide_2892 Alicycliphilus denitrificans BC PpiC-type peptidyl-prolyl cis-trans isomerase YP_004127507.1 2992277 R 596153 CDS YP_004127508.1 319763571 10104954 complement(2994349..2994621) 1 NC_014910.1 KEGG: dia:Dtpsy_1187 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 2994621 10104954 Alide_2893 Alicycliphilus denitrificans BC histone family protein DNA-binding protein YP_004127508.1 2994349 R 596153 CDS YP_004127509.1 319763572 10104955 complement(2994966..2995553) 1 NC_014910.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: dia:Dtpsy_1186 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; cdp-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 2995553 10104955 Alide_2894 Alicycliphilus denitrificans BC cdp-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_004127509.1 2994966 R 596153 CDS YP_004127510.1 319763573 10104956 complement(2995583..2997541) 1 NC_014910.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; KEGG: dia:Dtpsy_1185 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1; excinuclease abc, c subunit 2997541 10104956 Alide_2895 Alicycliphilus denitrificans BC excinuclease abc, c subunit YP_004127510.1 2995583 R 596153 CDS YP_004127511.1 319763574 10104957 complement(2997666..2998295) 1 NC_014910.1 KEGG: ajs:Ajs_2624 hypothetical protein; hypothetical protein 2998295 10104957 Alide_2896 Alicycliphilus denitrificans BC hypothetical protein YP_004127511.1 2997666 R 596153 CDS YP_004127512.1 319763575 10104960 2998769..2999998 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: azo:azo3693 hypothetical protein; major facilitator superfamily protein 2999998 10104960 Alide_2897 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004127512.1 2998769 D 596153 CDS YP_004127513.1 319763576 10104961 complement(3000014..3000286) 1 NC_014910.1 KEGG: ctt:CtCNB1_0646 histone-like nucleoid-structuring protein H-NS; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein h-ns 3000286 10104961 Alide_2898 Alicycliphilus denitrificans BC histone family protein nucleoid-structuring protein h-ns YP_004127513.1 3000014 R 596153 CDS YP_004127514.1 319763577 10104962 3000368..3001165 1 NC_014910.1 KEGG: reh:H16_A2948 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 3001165 10104962 Alide_2899 Alicycliphilus denitrificans BC regulatory protein iclr YP_004127514.1 3000368 D 596153 CDS YP_004127515.1 319763578 10104963 3001418..3002191 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dac:Daci_0266 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 3002191 10104963 Alide_2900 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004127515.1 3001418 D 596153 CDS YP_004127516.1 319763579 10104964 3002214..3003440 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: tin:Tint_1589 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 3003440 10104964 Alide_2901 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127516.1 3002214 D 596153 CDS YP_004127517.1 319763580 10104965 3003450..3005150 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: tin:Tint_1587 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 3005150 10104965 Alide_2902 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004127517.1 3003450 D 596153 CDS YP_004127518.1 319763581 10104966 complement(3005291..3006457) 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0264 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 3006457 10104966 Alide_2903 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127518.1 3005291 R 596153 CDS YP_004127519.1 319763582 10104967 complement(3006502..3007209) 1 NC_014910.1 KEGG: dac:Daci_0263 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3007209 10104967 Alide_2904 Alicycliphilus denitrificans BC ABC transporter YP_004127519.1 3006502 R 596153 CDS YP_004127520.1 319763583 10104968 complement(3007196..3007960) 1 NC_014910.1 KEGG: dac:Daci_0262 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3007960 10104968 Alide_2905 Alicycliphilus denitrificans BC ABC transporter YP_004127520.1 3007196 R 596153 CDS YP_004127521.1 319763584 10104969 complement(3007947..3008921) 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dac:Daci_0261 inner-membrane translocator; inner-membrane translocator 3008921 10104969 Alide_2906 Alicycliphilus denitrificans BC inner-membrane translocator YP_004127521.1 3007947 R 596153 CDS YP_004127522.1 319763585 10104970 complement(3008922..3009785) 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dac:Daci_0260 inner-membrane translocator; inner-membrane translocator 3009785 10104970 Alide_2907 Alicycliphilus denitrificans BC inner-membrane translocator YP_004127522.1 3008922 R 596153 CDS YP_004127523.1 319763586 10104971 3010384..3011352 1 NC_014910.1 KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein 3011352 10104971 Alide_2908 Alicycliphilus denitrificans BC hypothetical protein YP_004127523.1 3010384 D 596153 CDS YP_004127524.1 319763587 10104972 3011417..3012472 1 NC_014910.1 PFAM: porin Gram-negative type; KEGG: bcm:Bcenmc03_6621 porin; porin 3012472 10104972 Alide_2909 Alicycliphilus denitrificans BC porin YP_004127524.1 3011417 D 596153 CDS YP_004127525.1 319763588 10104973 3012514..3012999 1 NC_014910.1 KEGG: aav:Aave_4649 protein of unknown function DUF894, DitE; manually curated; PFAM: protein of unknown function DUF894 DitE; hypothetical protein 3012999 10104973 Alide_2910 Alicycliphilus denitrificans BC hypothetical protein YP_004127525.1 3012514 D 596153 CDS YP_004127526.1 319763589 10104974 3013106..3013915 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB0629 enoyl-CoA hydratase; enoyl-CoA hydratase 3013915 10104974 Alide_2911 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004127526.1 3013106 D 596153 CDS YP_004127527.1 319763590 10104975 3014011..3015504 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_C7306 aldehyde dehydrogenase (acceptor); aldehyde dehydrogenase 3015504 10104975 Alide_2912 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004127527.1 3014011 D 596153 CDS YP_004127528.1 319763591 10104976 3015593..3017071 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_C7305 aldehyde dehydrogenase (acceptor); aldehyde dehydrogenase 3017071 10104976 Alide_2913 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004127528.1 3015593 D 596153 CDS YP_004127529.1 319763592 10104977 3017142..3018548 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: bpa:BPP0622 hypothetical protein; mmge/prpd family protein 3018548 10104977 Alide_2914 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004127529.1 3017142 D 596153 CDS YP_004127530.1 319763593 10104978 3018572..3019543 1 NC_014910.1 KEGG: bbr:BB0625 hypothetical protein; hypothetical protein 3019543 10104978 Alide_2915 Alicycliphilus denitrificans BC hypothetical protein YP_004127530.1 3018572 D 596153 CDS YP_004127531.1 319763594 10104979 3019726..3019935 1 NC_014910.1 KEGG: ank:AnaeK_1894 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 3019935 10104979 Alide_2916 Alicycliphilus denitrificans BC hydroxyacylglutathione hydrolase YP_004127531.1 3019726 D 596153 CDS YP_004127532.1 319763595 10104980 3019943..3021430 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_C6756 aldehyde dehydrogenase (acceptor); aldehyde dehydrogenase 3021430 10104980 Alide_2917 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004127532.1 3019943 D 596153 CDS YP_004127533.1 319763596 10104981 3021448..3022518 1 NC_014910.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bur:Bcep18194_C7304 zinc-containing alcohol dehydrogenase superfamily protein; alcohol dehydrogenase 3022518 10104981 Alide_2918 Alicycliphilus denitrificans BC alcohol dehydrogenase YP_004127533.1 3021448 D 596153 CDS YP_004127534.1 319763597 10104982 3022605..3023738 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: jan:Jann_2263 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 3023738 10104982 Alide_2919 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127534.1 3022605 D 596153 CDS YP_004127535.1 319763598 10104983 3023817..3024710 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: jan:Jann_2267 inner-membrane translocator; inner-membrane translocator 3024710 10104983 Alide_2920 Alicycliphilus denitrificans BC inner-membrane translocator YP_004127535.1 3023817 D 596153 CDS YP_004127536.1 319763599 10104984 3024715..3025608 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: jan:Jann_2266 inner-membrane translocator; inner-membrane translocator 3025608 10104984 Alide_2921 Alicycliphilus denitrificans BC inner-membrane translocator YP_004127536.1 3024715 D 596153 CDS YP_004127537.1 319763600 10104985 3025605..3026369 1 NC_014910.1 KEGG: jan:Jann_2265 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3026369 10104985 Alide_2922 Alicycliphilus denitrificans BC ABC transporter YP_004127537.1 3025605 D 596153 CDS YP_004127538.1 319763601 10104986 3026641..3027387 1 NC_014910.1 KEGG: jan:Jann_2264 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3027387 10104986 Alide_2923 Alicycliphilus denitrificans BC ABC transporter YP_004127538.1 3026641 D 596153 CDS YP_004127539.1 319763602 10104987 complement(3027498..3029213) 1 NC_014910.1 KEGG: dia:Dtpsy_1751 electron-transferring-flavoprotein dehydrogenase; PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; electron-transferring-flavoprotein dehydrogenase 3029213 10104987 Alide_2924 Alicycliphilus denitrificans BC electron-transferring-flavoprotein dehydrogenase YP_004127539.1 3027498 R 596153 CDS YP_004127540.1 319763603 10104988 complement(3029274..3030119) 1 NC_014910.1 PFAM: HpcH/HpaI aldolase; KEGG: bur:Bcep18194_C7302 HpcH/HpaI aldolase; hpch/hpai aldolase 3030119 10104988 Alide_2925 Alicycliphilus denitrificans BC hpch/hpai aldolase YP_004127540.1 3029274 R 596153 CDS YP_004127541.1 319763604 10104989 complement(3030122..3031321) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C7301 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3031321 10104989 Alide_2926 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127541.1 3030122 R 596153 CDS YP_004127542.1 319763605 10104990 complement(3031334..3032182) 1 NC_014910.1 KEGG: bbr:BB0622 hypothetical protein; hypothetical protein 3032182 10104990 Alide_2927 Alicycliphilus denitrificans BC hypothetical protein YP_004127542.1 3031334 R 596153 CDS YP_004127543.1 319763606 10104991 complement(3032271..3033203) 1 NC_014910.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha 3033203 10104991 Alide_2928 Alicycliphilus denitrificans BC electron transfer flavoprotein subunit alpha YP_004127543.1 3032271 R 596153 CDS YP_004127544.1 319763607 10104992 complement(3033221..3033970) 1 NC_014910.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunits alpha/beta 3033970 10104992 Alide_2929 Alicycliphilus denitrificans BC electron transfer flavoprotein subunits alpha/beta YP_004127544.1 3033221 R 596153 CDS YP_004127545.1 319763608 10104993 complement(3033993..3035159) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bur:Bcep18194_C7297 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3035159 10104993 Alide_2930 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127545.1 3033993 R 596153 CDS YP_004127546.1 319763609 10104994 3035269..3036198 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bur:Bcep18194_C7296 LysR family transcriptional regulator; LysR family transcriptional regulator 3036198 10104994 Alide_2931 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127546.1 3035269 D 596153 CDS YP_004127547.1 319763610 10104995 complement(3036195..3037625) 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_C7308 MmgE/PrpD; mmge/prpd family protein 3037625 10104995 Alide_2932 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004127547.1 3036195 R 596153 CDS YP_004127548.1 319763611 10104996 complement(3037637..3038818) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB0617 CaiB/BaiF family protein; l-carnitine dehydratase/bile acid-inducible protein f 3038818 10104996 Alide_2933 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127548.1 3037637 R 596153 CDS YP_004127549.1 319763612 10104998 complement(3039726..3041663) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB0615 AMP-binding enzyme; AMP-dependent synthetase/ligase 3041663 10104998 Alide_2935 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004127549.1 3039726 R 596153 CDS YP_004127550.1 319763613 10104999 complement(3041677..3042882) 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: bur:Bcep18194_C7332 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 3042882 10104999 Alide_2936 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004127550.1 3041677 R 596153 CDS YP_004127551.1 319763614 10105000 complement(3042963..3043712) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0613 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 3043712 10105000 Alide_2937 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004127551.1 3042963 R 596153 CDS YP_004127552.1 319763615 10105001 complement(3043743..3044618) 1 NC_014910.1 KEGG: bpa:BPP0606 enoyl-CoA hydratase; PFAM: MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 3044618 10105001 Alide_2938 Alicycliphilus denitrificans BC 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_004127552.1 3043743 R 596153 CDS YP_004127553.1 319763616 10105002 3044854..3046005 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB0611 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3046005 10105002 Alide_2939 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127553.1 3044854 D 596153 CDS YP_004127554.1 319763617 10105003 complement(3046045..3046914) 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_C7313 alpha/beta hydrolase fold; alpha/beta hydrolase 3046914 10105003 Alide_2940 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004127554.1 3046045 R 596153 CDS YP_004127555.1 319763618 10105004 3047027..3047860 1 NC_014910.1 KEGG: bpa:BPP0603 IclR family regulatory protein; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 3047860 10105004 Alide_2941 Alicycliphilus denitrificans BC regulatory protein iclr YP_004127555.1 3047027 D 596153 CDS YP_004127556.1 319763619 10105005 3047857..3048651 1 NC_014910.1 KEGG: bbr:BB0608 IclR family regulatory protein; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 3048651 10105005 Alide_2942 Alicycliphilus denitrificans BC regulatory protein iclr YP_004127556.1 3047857 D 596153 CDS YP_004127557.1 319763620 10105006 complement(3048695..3050131) 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_C6759 MmgE/PrpD; mmge/prpd family protein 3050131 10105006 Alide_2943 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004127557.1 3048695 R 596153 CDS YP_004127558.1 319763621 10105007 complement(3050128..3050748) 1 NC_014910.1 KEGG: bur:Bcep18194_C6760 hypothetical protein; hypothetical protein 3050748 10105007 Alide_2944 Alicycliphilus denitrificans BC hypothetical protein YP_004127558.1 3050128 R 596153 CDS YP_004127559.1 319763622 10105008 complement(3050821..3051768) 1 NC_014910.1 KEGG: vei:Veis_2943 hypothetical protein; hypothetical protein 3051768 10105008 Alide_2945 Alicycliphilus denitrificans BC hypothetical protein YP_004127559.1 3050821 R 596153 CDS YP_004127560.1 319763623 10105009 3052008..3053627 1 NC_014910.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bur:Bcep18194_C7484 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 3053627 10105009 Alide_2946 Alicycliphilus denitrificans BC glucose-methanol-choline oxidoreductase YP_004127560.1 3052008 D 596153 CDS YP_004127561.1 319763624 10105010 3053653..3055125 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_C7485 aldehyde dehydrogenase; aldehyde dehydrogenase 3055125 10105010 Alide_2947 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004127561.1 3053653 D 596153 CDS YP_004127562.1 319763625 10105011 3055156..3056085 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bur:Bcep18194_C7486 LysR family transcriptional regulator; LysR family transcriptional regulator 3056085 10105011 Alide_2948 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127562.1 3055156 D 596153 CDS YP_004127563.1 319763626 10105012 complement(3056086..3057303) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3057303 10105012 Alide_2949 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127563.1 3056086 R 596153 CDS YP_004127564.1 319763627 10105013 complement(3057309..3058322) 1 NC_014910.1 KEGG: reu:Reut_A1831 hypothetical protein; hypothetical protein 3058322 10105013 Alide_2950 Alicycliphilus denitrificans BC hypothetical protein YP_004127564.1 3057309 R 596153 CDS YP_004127565.1 319763628 10105014 complement(3058384..3059199) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_5272 short chain enoyl-CoA hydratase; enoyl-CoA hydratase 3059199 10105014 Alide_2951 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004127565.1 3058384 R 596153 CDS YP_004127566.1 319763629 10105015 complement(3059241..3060047) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_C7276 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 3060047 10105015 Alide_2952 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004127566.1 3059241 R 596153 CDS YP_004127567.1 319763630 10105016 3060317..3060430 1 NC_014910.1 hypothetical protein 3060430 10105016 Alide_2953 Alicycliphilus denitrificans BC hypothetical protein YP_004127567.1 3060317 D 596153 CDS YP_004127568.1 319763631 10105017 3060576..3061718 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase 3061718 10105017 Alide_2954 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127568.1 3060576 D 596153 CDS YP_004127569.1 319763632 10105018 3061733..3062233 1 NC_014910.1 PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_A1834 MaoC-like dehydratase; MaoC domain-containing protein 3062233 10105018 Alide_2955 Alicycliphilus denitrificans BC MaoC domain-containing protein YP_004127569.1 3061733 D 596153 CDS YP_004127570.1 319763633 10105019 3062239..3063597 1 NC_014910.1 PFAM: protein of unknown function DUF1446; KEGG: sth:STH1574 hypothetical protein; hypothetical protein 3063597 10105019 Alide_2956 Alicycliphilus denitrificans BC hypothetical protein YP_004127570.1 3062239 D 596153 CDS YP_004127571.1 319763634 10105020 3063599..3063940 1 NC_014910.1 KEGG: bbt:BBta_2933 hypothetical protein; hypothetical protein 3063940 10105020 Alide_2957 Alicycliphilus denitrificans BC hypothetical protein YP_004127571.1 3063599 D 596153 CDS YP_004127572.1 319763635 10105021 3063953..3065134 1 NC_014910.1 KEGG: eba:ebA306 lipid-transfer protein; PFAM: Beta-ketoacyl synthase; propanoyl-CoA c-acyltransferase 3065134 10105021 Alide_2958 Alicycliphilus denitrificans BC propanoyl-CoA c-acyltransferase YP_004127572.1 3063953 D 596153 CDS YP_004127573.1 319763636 10105022 3065252..3066259 1 NC_014910.1 KEGG: reu:Reut_A1831 hypothetical protein; hypothetical protein 3066259 10105022 Alide_2959 Alicycliphilus denitrificans BC hypothetical protein YP_004127573.1 3065252 D 596153 CDS YP_004127574.1 319763637 10105023 3066265..3067497 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3067497 10105023 Alide_2960 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127574.1 3066265 D 596153 CDS YP_004127575.1 319763638 10105024 3067545..3068702 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_A1830 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3068702 10105024 Alide_2961 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127575.1 3067545 D 596153 CDS YP_004127576.1 319763639 10105025 3068727..3068885 1 NC_014910.1 KEGG: dac:Daci_0790 hypothetical protein; hypothetical protein 3068885 10105025 Alide_2962 Alicycliphilus denitrificans BC hypothetical protein YP_004127576.1 3068727 D 596153 CDS YP_004127577.1 319763640 10105026 3069212..3069688 1 NC_014910.1 KEGG: jan:Jann_3827 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; hypothetical protein 3069688 10105026 Alide_2963 Alicycliphilus denitrificans BC hypothetical protein YP_004127577.1 3069212 D 596153 CDS YP_004127578.1 319763641 10105027 3069734..3070891 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C7493 alpha-methylacyl-CoA racemase; l-carnitine dehydratase/bile acid-inducible protein f 3070891 10105027 Alide_2964 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127578.1 3069734 D 596153 CDS YP_004127579.1 319763642 10105029 complement(3071052..3072020) 1 NC_014910.1 KEGG: bbr:BB0605 hypothetical protein; hypothetical protein 3072020 10105029 Alide_2966 Alicycliphilus denitrificans BC hypothetical protein YP_004127579.1 3071052 R 596153 CDS YP_004127580.1 319763643 10105030 complement(3072187..3073143) 1 NC_014910.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B2640 LysR family transcriptional regulator; LysR family transcriptional regulator 3073143 10105030 Alide_2967 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127580.1 3072187 R 596153 CDS YP_004127581.1 319763644 10105031 3073232..3074653 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_B2639 hypothetical protein; mmge/prpd family protein 3074653 10105031 Alide_2968 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004127581.1 3073232 D 596153 CDS YP_004127582.1 319763645 10105032 3074818..3075600 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0604 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 3075600 10105032 Alide_2969 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004127582.1 3074818 D 596153 CDS YP_004127583.1 319763646 10105033 3075597..3077567 1 NC_014910.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; alanine dehydrogenase/PNT domain protein; KEGG: bbr:BB0603 NADH:flavin oxidoreductase / NADH oxidase family protein; NADH:flavin oxidoreductase 3077567 10105033 Alide_2970 Alicycliphilus denitrificans BC NADH:flavin oxidoreductase YP_004127583.1 3075597 D 596153 CDS YP_004127584.1 319763647 10105034 complement(3077582..3078301) 1 NC_014910.1 KEGG: bbr:BB0602 ABC transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3078301 10105034 Alide_2971 Alicycliphilus denitrificans BC ABC transporter YP_004127584.1 3077582 R 596153 CDS YP_004127585.1 319763648 10105035 complement(3078291..3079040) 1 NC_014910.1 KEGG: bbr:BB0601 ABC transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3079040 10105035 Alide_2972 Alicycliphilus denitrificans BC ABC transporter YP_004127585.1 3078291 R 596153 CDS YP_004127586.1 319763649 10105036 complement(3079043..3079960) 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: bbr:BB0600 branched-chain amino acid transport system permease protein; inner-membrane translocator 3079960 10105036 Alide_2973 Alicycliphilus denitrificans BC inner-membrane translocator YP_004127586.1 3079043 R 596153 CDS YP_004127587.1 319763650 10105037 complement(3079953..3080828) 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: bbr:BB0599 branched-chain amino acid transport system permease protein; inner-membrane translocator 3080828 10105037 Alide_2974 Alicycliphilus denitrificans BC inner-membrane translocator YP_004127587.1 3079953 R 596153 CDS YP_004127588.1 319763651 10105038 complement(3081007..3082182) 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB0598 extracellular ligand binding protein; ABC transporter substrate-binding protein 3082182 10105038 Alide_2975 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127588.1 3081007 R 596153 CDS YP_004127589.1 319763652 10105039 complement(3082377..3083147) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB0597 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase 3083147 10105039 Alide_2976 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004127589.1 3082377 R 596153 CDS YP_004127590.1 319763653 10105040 complement(3083152..3083835) 1 NC_014910.1 PFAM: nitroreductase; KEGG: bbr:BB0596 nitroreductase family protein; nitroreductase 3083835 10105040 Alide_2977 Alicycliphilus denitrificans BC nitroreductase YP_004127590.1 3083152 R 596153 CDS YP_004127591.1 319763654 10105041 complement(3083839..3084261) 1 NC_014910.1 KEGG: bbr:BB0595 hypothetical protein; hypothetical protein 3084261 10105041 Alide_2978 Alicycliphilus denitrificans BC hypothetical protein YP_004127591.1 3083839 R 596153 CDS YP_004127592.1 319763655 10105042 complement(3084258..3085223) 1 NC_014910.1 KEGG: bbr:BB0594 hypothetical protein; hypothetical protein 3085223 10105042 Alide_2979 Alicycliphilus denitrificans BC hypothetical protein YP_004127592.1 3084258 R 596153 CDS YP_004127593.1 319763656 10105043 complement(3085236..3086396) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB0593 CaiB/BaiF family protein; l-carnitine dehydratase/bile acid-inducible protein f 3086396 10105043 Alide_2980 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127593.1 3085236 R 596153 CDS YP_004127594.1 319763657 10105044 complement(3086398..3087642) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_B2644 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3087642 10105044 Alide_2981 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127594.1 3086398 R 596153 CDS YP_004127595.1 319763658 10105045 complement(3087719..3088885) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bur:Bcep18194_C7290 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3088885 10105045 Alide_2982 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127595.1 3087719 R 596153 CDS YP_004127596.1 319763659 10105046 complement(3088897..3089358) 1 NC_014910.1 PFAM: MaoC domain protein dehydratase; KEGG: bur:Bcep18194_C7289 MaoC-like dehydratase; MaoC domain-containing protein 3089358 10105046 Alide_2983 Alicycliphilus denitrificans BC MaoC domain-containing protein YP_004127596.1 3088897 R 596153 CDS YP_004127597.1 319763660 10105047 complement(3089386..3090270) 1 NC_014910.1 KEGG: bbr:BB0589 hypothetical protein; PFAM: HpcH/HpaI aldolase; citryl-CoA lyase 3090270 10105047 Alide_2984 Alicycliphilus denitrificans BC citryl-CoA lyase YP_004127597.1 3089386 R 596153 CDS YP_004127598.1 319763661 10105048 complement(3090475..3091092) 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: dac:Daci_4464 TetR family transcriptional regulator; regulatory protein tetr 3091092 10105048 Alide_2985 Alicycliphilus denitrificans BC regulatory protein tetr YP_004127598.1 3090475 R 596153 CDS YP_004127599.1 319763662 10105051 complement(3091563..3093983) 1 NC_014910.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: dia:Dtpsy_1130 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATP-dependent protease la 3093983 10105051 Alide_2986 Alicycliphilus denitrificans BC ATP-dependent protease la YP_004127599.1 3091563 R 596153 CDS YP_004127600.1 319763663 10105052 complement(3094122..3095387) 1 NC_014910.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: dia:Dtpsy_1129 ATP-dependent protease ATP-binding subunit ClpX; SMART: AAA ATPase; ATP-dependent clp protease, ATP-binding subunit clpx 3095387 10105052 Alide_2987 Alicycliphilus denitrificans BC ATP-dependent clp protease, ATP-binding subunit clpx YP_004127600.1 3094122 R 596153 CDS YP_004127601.1 319763664 10105053 complement(3095487..3096095) 1 NC_014910.1 TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: dia:Dtpsy_1128 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; ATP-dependent clp protease, proteolytic subunit clpp 3096095 10105053 Alide_2988 Alicycliphilus denitrificans BC ATP-dependent clp protease, proteolytic subunit clpp YP_004127601.1 3095487 R 596153 CDS YP_004127602.1 319763665 10105054 complement(3096220..3097530) 1 NC_014910.1 KEGG: dia:Dtpsy_1127 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type; trigger factor 3097530 10105054 Alide_2989 Alicycliphilus denitrificans BC trigger factor YP_004127602.1 3096220 R 596153 CDS YP_004127603.1 319763666 10105056 complement(3097754..3100873) 1 NC_014910.1 PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_1207 acriflavin resistance protein; acriflavin resistance protein 3100873 10105056 Alide_2990 Alicycliphilus denitrificans BC acriflavin resistance protein YP_004127603.1 3097754 R 596153 CDS YP_004127604.1 319763667 10105057 complement(3100883..3102154) 1 NC_014910.1 KEGG: dia:Dtpsy_1125 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 3102154 10105057 Alide_2991 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004127604.1 3100883 R 596153 CDS YP_004127605.1 319763668 10105058 3102247..3103125 1 NC_014910.1 KEGG: dia:Dtpsy_1124 squalene synthase HpnC; TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; squalene synthase hpnc 3103125 10105058 Alide_2992 Alicycliphilus denitrificans BC squalene synthase hpnc YP_004127605.1 3102247 D 596153 CDS YP_004127606.1 319763669 10105059 3103239..3104078 1 NC_014910.1 TIGRFAM: squalene synthase HpnD; KEGG: dia:Dtpsy_1121 squalene synthase HpnD; PFAM: Squalene/phytoene synthase; squalene synthase hpnd 3104078 10105059 Alide_2993 Alicycliphilus denitrificans BC squalene synthase hpnd YP_004127606.1 3103239 D 596153 CDS YP_004127607.1 319763670 10105060 complement(3104110..3105744) 1 NC_014910.1 KEGG: rfr:Rfer_3023 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 3105744 10105060 Alide_2994 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004127607.1 3104110 R 596153 CDS YP_004127608.1 319763671 10105061 3105927..3107219 1 NC_014910.1 KEGG: ajs:Ajs_1201 amine oxidase; TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; squalene-associated fad-dependent desaturase 3107219 10105061 Alide_2995 Alicycliphilus denitrificans BC squalene-associated fad-dependent desaturase YP_004127608.1 3105927 D 596153 CDS YP_004127609.1 319763672 10105062 3107233..3109257 1 NC_014910.1 KEGG: pna:Pnap_2063 hypothetical protein; hypothetical protein 3109257 10105062 Alide_2996 Alicycliphilus denitrificans BC hypothetical protein YP_004127609.1 3107233 D 596153 CDS YP_004127610.1 319763673 10105063 complement(3109459..3110712) 1 NC_014910.1 KEGG: dia:Dtpsy_1119 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; ribonuclease bn 3110712 10105063 Alide_2997 Alicycliphilus denitrificans BC ribonuclease bn YP_004127610.1 3109459 R 596153 CDS YP_004127611.1 319763674 10105064 3110734..3111162 1 NC_014910.1 PFAM: Protein of unknown function DUF2069, membrane; KEGG: dia:Dtpsy_1118 membrane protein-like protein; hypothetical protein 3111162 10105064 Alide_2998 Alicycliphilus denitrificans BC hypothetical protein YP_004127611.1 3110734 D 596153 CDS YP_004127612.1 319763675 10105065 3111159..3112583 1 NC_014910.1 PFAM: FAD linked oxidase domain protein; KEGG: dia:Dtpsy_1117 FAD linked oxidase domain protein; fad linked oxidase domain-containing protein 3112583 10105065 Alide_2999 Alicycliphilus denitrificans BC fad linked oxidase domain-containing protein YP_004127612.1 3111159 D 596153 CDS YP_004127613.1 319763676 10105066 3112636..3113451 1 NC_014910.1 TIGRFAM: thymidylate synthase; KEGG: ajs:Ajs_1197 thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase 3113451 10105066 Alide_3000 Alicycliphilus denitrificans BC thymidylate synthase YP_004127613.1 3112636 D 596153 CDS YP_004127614.1 319763677 10105067 3113448..3113945 1 NC_014910.1 KEGG: dia:Dtpsy_1115 dihydrofolate reductase; PFAM: dihydrofolate reductase region; dihydrofolate reductase 3113945 10105067 Alide_3001 Alicycliphilus denitrificans BC dihydrofolate reductase YP_004127614.1 3113448 D 596153 CDS YP_004127615.1 319763678 10105068 complement(3113911..3114441) 1 NC_014910.1 KEGG: vap:Vapar_3238 hypothetical protein; hypothetical protein 3114441 10105068 Alide_3002 Alicycliphilus denitrificans BC hypothetical protein YP_004127615.1 3113911 R 596153 CDS YP_004127616.1 319763679 10105069 complement(3114476..3115129) 1 NC_014910.1 PFAM: OmpA/MotB domain protein; KEGG: vap:Vapar_3239 hypothetical protein; ompa/motb domain-containing protein 3115129 10105069 Alide_3003 Alicycliphilus denitrificans BC ompa/motb domain-containing protein YP_004127616.1 3114476 R 596153 CDS YP_004127617.1 319763680 10105070 complement(3115126..3117213) 1 NC_014910.1 PFAM: protein of unknown function DUF802; KEGG: vap:Vapar_3240 protein of unknown function DUF802; hypothetical protein 3117213 10105070 Alide_3004 Alicycliphilus denitrificans BC hypothetical protein YP_004127617.1 3115126 R 596153 CDS YP_004127618.1 319763681 10105071 complement(3117210..3117881) 1 NC_014910.1 KEGG: vap:Vapar_3241 hypothetical protein; hypothetical protein 3117881 10105071 Alide_3005 Alicycliphilus denitrificans BC hypothetical protein YP_004127618.1 3117210 R 596153 CDS YP_004127619.1 319763682 10105072 complement(3118069..3118455) 1 NC_014910.1 PFAM: transposase IS4 family protein; KEGG: nwi:Nwi_1015 transposase, IS4; transposase is4 family protein 3118455 10105072 Alide_3006 Alicycliphilus denitrificans BC transposase is4 family protein YP_004127619.1 3118069 R 596153 CDS YP_004127620.1 319763683 10105073 complement(3118452..3118829) 1 NC_014910.1 KEGG: rle:pRL110581 transposase-related protein; transposase-like protein 3118829 10105073 Alide_3007 Alicycliphilus denitrificans BC transposase-like protein YP_004127620.1 3118452 R 596153 CDS YP_004127621.1 319763684 10105074 complement(3118906..3119616) 1 NC_014910.1 KEGG: tgr:Tgr7_1884 response regulator receiver protein; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 3119616 10105074 Alide_3008 Alicycliphilus denitrificans BC response regulator receiver YP_004127621.1 3118906 R 596153 CDS YP_004127622.1 319763685 10105075 complement(3119621..3122350) 1 NC_014910.1 KEGG: tgr:Tgr7_1885 sensor protein KdpD; PFAM: Osmosensitive K channel His kinase sensor; UspA domain-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; osmosensitive k channel his kinase sensor 3122350 10105075 Alide_3009 Alicycliphilus denitrificans BC osmosensitive k channel his kinase sensor YP_004127622.1 3119621 R 596153 CDS YP_004127623.1 319763686 10105076 complement(3122366..3122998) 1 NC_014910.1 TIGRFAM: potassium-transporting ATPase, C subunit; KEGG: pap:PSPA7_3714 K+-transporting ATPase subunit C; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C 3122998 10105076 Alide_3010 Alicycliphilus denitrificans BC potassium-transporting ATPase subunit C YP_004127623.1 3122366 R 596153 CDS YP_004127624.1 319763687 10105077 complement(3123012..3125036) 1 NC_014910.1 KEGG: tgr:Tgr7_1888 potassium-transporting ATPase subunit B; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; k+-transporting atpase, b subunit 3125036 10105077 Alide_3011 Alicycliphilus denitrificans BC k+-transporting atpase, b subunit YP_004127624.1 3123012 R 596153 CDS YP_004127625.1 319763688 10105078 complement(3125048..3126748) 1 NC_014910.1 TIGRFAM: potassium-transporting ATPase, A subunit; KEGG: pap:PSPA7_3712 potassium-transporting ATPase subunit A; PFAM: K transporting ATPase A subunit; potassium-transporting atpase, a subunit 3126748 10105078 Alide_3012 Alicycliphilus denitrificans BC potassium-transporting atpase, a subunit YP_004127625.1 3125048 R 596153 CDS YP_004127626.1 319763689 10105079 3126961..3127251 1 NC_014910.1 KEGG: shn:Shewana3_1258 XRE family transcriptional regulator; hypothetical protein 3127251 10105079 Alide_3013 Alicycliphilus denitrificans BC hypothetical protein YP_004127626.1 3126961 D 596153 CDS YP_004127627.1 319763690 10105080 3127258..3128034 1 NC_014910.1 KEGG: dia:Dtpsy_1114 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 3128034 10105080 Alide_3014 Alicycliphilus denitrificans BC exodeoxyribonuclease III YP_004127627.1 3127258 D 596153 CDS YP_004127628.1 319763691 10105081 complement(3128358..3129797) 1 NC_014910.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: dia:Dtpsy_1112 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: response regulator receiver; AAA ATPase; nitrogen regulation protein nr(i) 3129797 10105081 Alide_3015 Alicycliphilus denitrificans BC nitrogen regulation protein nr(i) YP_004127628.1 3128358 R 596153 CDS YP_004127629.1 319763692 10105082 complement(3129839..3130909) 1 NC_014910.1 manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dia:Dtpsy_1111 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 3130909 10105082 Alide_3016 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004127629.1 3129839 R 596153 CDS YP_004127630.1 319763693 10105083 complement(3130934..3131422) 1 NC_014910.1 KEGG: dia:Dtpsy_1110 signal peptide protein; hypothetical protein 3131422 10105083 Alide_3017 Alicycliphilus denitrificans BC hypothetical protein YP_004127630.1 3130934 R 596153 CDS YP_004127631.1 319763694 10105084 complement(3131596..3133011) 1 NC_014910.1 KEGG: aav:Aave_1442 L-glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; glutamine synthetase, type i 3133011 10105084 Alide_3018 Alicycliphilus denitrificans BC glutamine synthetase, type i YP_004127631.1 3131596 R 596153 CDS YP_004127632.1 319763695 10105085 complement(3133183..3134004) 1 NC_014910.1 PFAM: molybdopterin binding domain; KEGG: ajs:Ajs_1188 molybdopterin binding domain-containing protein; molybdopterin binding domain-containing protein 3134004 10105085 Alide_3019 Alicycliphilus denitrificans BC molybdopterin binding domain-containing protein YP_004127632.1 3133183 R 596153 CDS YP_004127633.1 319763696 10105086 complement(3134001..3134894) 1 NC_014910.1 KEGG: dia:Dtpsy_1107 transmembrane protein; transmembrane protein 3134894 10105086 Alide_3020 Alicycliphilus denitrificans BC transmembrane protein YP_004127633.1 3134001 R 596153 CDS YP_004127634.1 319763697 10105087 complement(3134922..3135947) 1 NC_014910.1 PFAM: fatty acid hydroxylase; KEGG: dia:Dtpsy_1106 fatty acid hydroxylase; fatty acid hydroxylase 3135947 10105087 Alide_3021 Alicycliphilus denitrificans BC fatty acid hydroxylase YP_004127634.1 3134922 R 596153 CDS YP_004127635.1 319763698 10105088 complement(3135962..3136765) 1 NC_014910.1 KEGG: dia:Dtpsy_1105 polysaccharide deacetylase; manually curated; PFAM: polysaccharide deacetylase; polysaccharide deacetylase 3136765 10105088 Alide_3022 Alicycliphilus denitrificans BC polysaccharide deacetylase YP_004127635.1 3135962 R 596153 CDS YP_004127636.1 319763699 10105089 complement(3136779..3137744) 1 NC_014910.1 KEGG: dia:Dtpsy_1104 hypothetical protein; hypothetical protein 3137744 10105089 Alide_3023 Alicycliphilus denitrificans BC hypothetical protein YP_004127636.1 3136779 R 596153 CDS YP_004127637.1 319763700 10105090 complement(3137852..3138589) 1 NC_014910.1 PFAM: pseudouridine synthase; KEGG: ajs:Ajs_1183 ribosomal small subunit pseudouridine synthase A; pseudouridine synthase 3138589 10105090 Alide_3024 Alicycliphilus denitrificans BC pseudouridine synthase YP_004127637.1 3137852 R 596153 CDS YP_004127638.1 319763701 10105096 complement(3144441..3144965) 1 NC_014910.1 PFAM: phosphoribosyltransferase; KEGG: ajs:Ajs_1182 phosphoribosyltransferase; phosphoribosyltransferase 3144965 10105096 Alide_3025 Alicycliphilus denitrificans BC phosphoribosyltransferase YP_004127638.1 3144441 R 596153 CDS YP_004127639.1 319763702 10105097 complement(3145037..3146413) 1 NC_014910.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: dia:Dtpsy_1101 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; adenylosuccinate synthetase 3146413 10105097 Alide_3026 Alicycliphilus denitrificans BC adenylosuccinate synthetase YP_004127639.1 3145037 R 596153 CDS YP_004127640.1 319763703 10105098 complement(3146441..3147589) 1 NC_014910.1 KEGG: ajs:Ajs_1180 tRNA synthetase, class II (G, H, P and S); TIGRFAM: histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II (G H P and S); histidyl-tRNA synthetase 2 3147589 10105098 Alide_3027 Alicycliphilus denitrificans BC histidyl-tRNA synthetase 2 YP_004127640.1 3146441 R 596153 CDS YP_004127641.1 319763704 10105099 complement(3147664..3147852) 1 NC_014910.1 PFAM: Protein of unknown function DUF2065; KEGG: ajs:Ajs_1179 hypothetical protein; hypothetical protein 3147852 10105099 Alide_3028 Alicycliphilus denitrificans BC hypothetical protein YP_004127641.1 3147664 R 596153 CDS YP_004127642.1 319763705 10105100 complement(3147881..3148795) 1 NC_014910.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: ajs:Ajs_1178 HflC protein; SMART: band 7 protein; hflc protein 3148795 10105100 Alide_3029 Alicycliphilus denitrificans BC hflc protein YP_004127642.1 3147881 R 596153 CDS YP_004127643.1 319763706 10105101 complement(3148805..3150181) 1 NC_014910.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: dia:Dtpsy_1097 HflK protein; SMART: band 7 protein; hflk protein 3150181 10105101 Alide_3030 Alicycliphilus denitrificans BC hflk protein YP_004127643.1 3148805 R 596153 CDS YP_004127644.1 319763707 10105102 complement(3150234..3151412) 1 NC_014910.1 KEGG: ajs:Ajs_1176 small GTP-binding protein; TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; GTP-binding protein HflX 3151412 10105102 Alide_3031 Alicycliphilus denitrificans BC GTP-binding protein HflX YP_004127644.1 3150234 R 596153 CDS YP_004127645.1 319763708 10105103 complement(3151477..3151779) 1 NC_014910.1 KEGG: dia:Dtpsy_1095 RNA chaperone Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; RNA chaperone hfq 3151779 10105103 Alide_3032 Alicycliphilus denitrificans BC RNA chaperone hfq YP_004127645.1 3151477 R 596153 CDS YP_004127646.1 319763709 10105104 complement(3151803..3153146) 1 NC_014910.1 KEGG: dia:Dtpsy_1094 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; ribosome-associated gtpase enga 3153146 10105104 Alide_3033 Alicycliphilus denitrificans BC ribosome-associated gtpase enga YP_004127646.1 3151803 R 596153 CDS YP_004127647.1 319763710 10105105 complement(3153165..3154313) 1 NC_014910.1 KEGG: dia:Dtpsy_1093 outer membrane assembly lipoprotein YfgL; TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; outer membrane assembly lipoprotein yfgl 3154313 10105105 Alide_3034 Alicycliphilus denitrificans BC outer membrane assembly lipoprotein yfgl YP_004127647.1 3153165 R 596153 CDS YP_004127648.1 319763711 10105106 complement(3154310..3154990) 1 NC_014910.1 PFAM: Protein of unknown function DUF2133; KEGG: dia:Dtpsy_1092 hypothetical protein; hypothetical protein 3154990 10105106 Alide_3035 Alicycliphilus denitrificans BC hypothetical protein YP_004127648.1 3154310 R 596153 CDS YP_004127649.1 319763712 10105107 complement(3155006..3156295) 1 NC_014910.1 TIGRFAM: histidyl-tRNA synthetase; KEGG: dia:Dtpsy_1091 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 3156295 10105107 Alide_3036 Alicycliphilus denitrificans BC histidyl-tRNA synthetase YP_004127649.1 3155006 R 596153 CDS YP_004127650.1 319763713 10105108 complement(3156378..3157652) 1 NC_014910.1 KEGG: dia:Dtpsy_1090 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 3157652 10105108 Alide_3037 Alicycliphilus denitrificans BC 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_004127650.1 3156378 R 596153 CDS YP_004127651.1 319763714 10105109 complement(3157653..3158549) 1 NC_014910.1 KEGG: dia:Dtpsy_1089 hypothetical protein; hypothetical protein 3158549 10105109 Alide_3038 Alicycliphilus denitrificans BC hypothetical protein YP_004127651.1 3157653 R 596153 CDS YP_004127652.1 319763715 10105110 complement(3158542..3159369) 1 NC_014910.1 KEGG: dia:Dtpsy_1088 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; type IV pilus biogenesis/stability protein pilw 3159369 10105110 Alide_3039 Alicycliphilus denitrificans BC type IV pilus biogenesis/stability protein pilw YP_004127652.1 3158542 R 596153 CDS YP_004127653.1 319763716 10105111 complement(3159391..3160515) 1 NC_014910.1 KEGG: dia:Dtpsy_1087 radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; radical sam enzyme, cfr family 3160515 10105111 Alide_3040 Alicycliphilus denitrificans BC radical sam enzyme, cfr family YP_004127653.1 3159391 R 596153 CDS YP_004127654.1 319763717 10105112 complement(3160603..3161028) 1 NC_014910.1 PFAM: nucleoside diphosphate kinase; KEGG: ajs:Ajs_1166 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 3161028 10105112 Alide_3041 Alicycliphilus denitrificans BC nucleoside-diphosphate kinase YP_004127654.1 3160603 R 596153 CDS YP_004127655.1 319763718 10105113 complement(3161107..3162462) 1 NC_014910.1 KEGG: dia:Dtpsy_1085 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; pseudouridine synthase 3162462 10105113 Alide_3042 Alicycliphilus denitrificans BC pseudouridine synthase YP_004127655.1 3161107 R 596153 CDS YP_004127656.1 319763719 10105114 complement(3162464..3163132) 1 NC_014910.1 KEGG: dia:Dtpsy_1084 chromosome segregation and condensation protein, ScpB; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; segregation and condensation protein b 3163132 10105114 Alide_3043 Alicycliphilus denitrificans BC segregation and condensation protein b YP_004127656.1 3162464 R 596153 CDS YP_004127657.1 319763720 10105115 complement(3163301..3164299) 1 NC_014910.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dia:Dtpsy_1083 pseudouridine synthase, RluA family; SMART: RNA-binding S4 domain protein; pseudouridine synthase 3164299 10105115 Alide_3044 Alicycliphilus denitrificans BC pseudouridine synthase YP_004127657.1 3163301 R 596153 CDS YP_004127658.1 319763721 10105116 complement(3164308..3165210) 1 NC_014910.1 KEGG: dia:Dtpsy_1082 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; peptidase m23 3165210 10105116 Alide_3045 Alicycliphilus denitrificans BC peptidase m23 YP_004127658.1 3164308 R 596153 CDS YP_004127659.1 319763722 10105117 complement(3165222..3165995) 1 NC_014910.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: dia:Dtpsy_1081 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-l-isoaspartate o-methyltransferase 3165995 10105117 Alide_3046 Alicycliphilus denitrificans BC protein-l-isoaspartate o-methyltransferase YP_004127659.1 3165222 R 596153 CDS YP_004127660.1 319763723 10105118 complement(3165995..3166816) 1 NC_014910.1 KEGG: ajs:Ajs_1160 stationary phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein sure 3166816 10105118 Alide_3047 Alicycliphilus denitrificans BC stationary-phase survival protein sure YP_004127660.1 3165995 R 596153 CDS YP_004127661.1 319763724 10105119 3166882..3168462 1 NC_014910.1 SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: dia:Dtpsy_1078 diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 3168462 10105119 Alide_3048 Alicycliphilus denitrificans BC diguanylate cyclase YP_004127661.1 3166882 D 596153 CDS YP_004127662.1 319763725 10105120 3168489..3170069 1 NC_014910.1 KEGG: dia:Dtpsy_1077 alkaline phosphatase; alkaline phosphatase 3170069 10105120 Alide_3049 Alicycliphilus denitrificans BC alkaline phosphatase YP_004127662.1 3168489 D 596153 CDS YP_004127663.1 319763726 10105121 complement(3170106..3171020) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_0788 LysR family transcriptional regulator; LysR family transcriptional regulator 3171020 10105121 Alide_3050 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127663.1 3170106 R 596153 CDS YP_004127664.1 319763727 10105122 3171133..3172329 1 NC_014910.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: dac:Daci_0789 FMN-dependent alpha-hydroxy acid dehydrogenase; fmn-dependent alpha-hydroxy acid dehydrogenase 3172329 10105122 Alide_3051 Alicycliphilus denitrificans BC fmn-dependent alpha-hydroxy acid dehydrogenase YP_004127664.1 3171133 D 596153 CDS YP_004127665.1 319763728 10105123 3172368..3173354 1 NC_014910.1 KEGG: dac:Daci_5118 hypothetical protein; hypothetical protein 3173354 10105123 Alide_3052 Alicycliphilus denitrificans BC hypothetical protein YP_004127665.1 3172368 D 596153 CDS YP_004127666.1 319763729 10105126 complement(3175196..3176032) 1 NC_014910.1 KEGG: bja:bll6360 bifunctional enzyme 2-hydroxyhepta-2,4-diene-1,7-dioatesomerase 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase protein; PFAM: fumarylacetoacetate (FAA) hydrolase; ureidoglycolate lyase 3176032 10105126 Alide_3055 Alicycliphilus denitrificans BC ureidoglycolate lyase YP_004127666.1 3175196 R 596153 CDS YP_004127667.1 319763730 10105127 3176150..3176824 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: bph:Bphy_3516 TetR family transcriptional regulator; regulatory protein tetr 3176824 10105127 Alide_3056 Alicycliphilus denitrificans BC regulatory protein tetr YP_004127667.1 3176150 D 596153 CDS YP_004127668.1 319763731 10105128 3177147..3179759 1 NC_014910.1 SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; manually curated; KEGG: dia:Dtpsy_1076 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS III domain protein; MutS IV domain protein; DNA mismatch repair protein muts 3179759 10105128 Alide_3057 Alicycliphilus denitrificans BC DNA mismatch repair protein muts YP_004127668.1 3177147 D 596153 CDS YP_004127669.1 319763732 10105129 complement(3179772..3181184) 1 NC_014910.1 KEGG: dac:Daci_2259 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family 3181184 10105129 Alide_3058 Alicycliphilus denitrificans BC rnd efflux system, outer membrane lipoprotein, nodt family YP_004127669.1 3179772 R 596153 CDS YP_004127670.1 319763733 10105130 complement(3181187..3184312) 1 NC_014910.1 PFAM: acriflavin resistance protein; KEGG: dac:Daci_2258 acriflavin resistance protein; acriflavin resistance protein 3184312 10105130 Alide_3059 Alicycliphilus denitrificans BC acriflavin resistance protein YP_004127670.1 3181187 R 596153 CDS YP_004127671.1 319763734 10105131 complement(3184433..3187549) 1 NC_014910.1 PFAM: acriflavin resistance protein; KEGG: dac:Daci_2257 acriflavin resistance protein; acriflavin resistance protein 3187549 10105131 Alide_3060 Alicycliphilus denitrificans BC acriflavin resistance protein YP_004127671.1 3184433 R 596153 CDS YP_004127672.1 319763735 10105132 complement(3187586..3189010) 1 NC_014910.1 KEGG: dac:Daci_2256 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; protein of unknown function Spy-related; efflux transporter, rnd family, mfp subunit 3189010 10105132 Alide_3061 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004127672.1 3187586 R 596153 CDS YP_004127673.1 319763736 10105133 3189322..3190134 1 NC_014910.1 PFAM: alpha/beta hydrolase fold; KEGG: dia:Dtpsy_1074 alpha/beta hydrolase fold protein; alpha/beta hydrolase 3190134 10105133 Alide_3062 Alicycliphilus denitrificans BC alpha/beta hydrolase YP_004127673.1 3189322 D 596153 CDS YP_004127674.1 319763737 10105134 complement(3190150..3190974) 1 NC_014910.1 KEGG: ajs:Ajs_1152 undecaprenyl pyrophosphate phosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase 3190974 10105134 Alide_3063 Alicycliphilus denitrificans BC undecaprenol kinase YP_004127674.1 3190150 R 596153 CDS YP_004127675.1 319763738 10105135 3191161..3191712 1 NC_014910.1 KEGG: vap:Vapar_3609 hypothetical protein; hypothetical protein 3191712 10105135 Alide_3064 Alicycliphilus denitrificans BC hypothetical protein YP_004127675.1 3191161 D 596153 CDS YP_004127676.1 319763739 10105136 3191724..3192095 1 NC_014910.1 KEGG: vei:Veis_2284 hypothetical protein; hypothetical protein 3192095 10105136 Alide_3065 Alicycliphilus denitrificans BC hypothetical protein YP_004127676.1 3191724 D 596153 CDS YP_004127677.1 319763740 10105137 3192105..3193160 1 NC_014910.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: vei:Veis_2283 signal transduction histidine kinase, LytS; histidine kinase internal region protein 3193160 10105137 Alide_3066 Alicycliphilus denitrificans BC histidine kinase internal region protein YP_004127677.1 3192105 D 596153 CDS YP_004127678.1 319763741 10105138 3193129..3193935 1 NC_014910.1 KEGG: dia:Dtpsy_1069 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; lyttr DNA-binding region protein 3193935 10105138 Alide_3067 Alicycliphilus denitrificans BC lyttr DNA-binding region protein YP_004127678.1 3193129 D 596153 CDS YP_004127679.1 319763742 10105139 3194112..3195317 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP2600 hypothetical protein; major facilitator superfamily protein 3195317 10105139 Alide_3068 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004127679.1 3194112 D 596153 CDS YP_004127680.1 319763743 10105140 3195343..3196581 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: dia:Dtpsy_1068 major facilitator superfamily MFS_1; major facilitator superfamily protein 3196581 10105140 Alide_3069 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004127680.1 3195343 D 596153 CDS YP_004127681.1 319763744 10105141 complement(3196633..3197853) 1 NC_014910.1 PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_1146 monooxygenase, FAD-binding; FAD-dependent oxidoreductase 3197853 10105141 Alide_3070 Alicycliphilus denitrificans BC FAD-dependent oxidoreductase YP_004127681.1 3196633 R 596153 CDS YP_004127682.1 319763745 10105142 complement(3197876..3200782) 1 NC_014910.1 KEGG: ajs:Ajs_1145 aconitate hydratase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain-containing protein; aconitate hydratase 1 3200782 10105142 Alide_3071 Alicycliphilus denitrificans BC aconitate hydratase 1 YP_004127682.1 3197876 R 596153 CDS YP_004127683.1 319763746 10105143 complement(3201055..3201351) 1 NC_014910.1 KEGG: dia:Dtpsy_1065 histone family protein nucleoid-structuring protein H-NS; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein h-ns 3201351 10105143 Alide_3072 Alicycliphilus denitrificans BC histone family protein nucleoid-structuring protein h-ns YP_004127683.1 3201055 R 596153 CDS YP_004127684.1 319763747 10105144 3201667..3202512 1 NC_014910.1 TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: dia:Dtpsy_1064 diadenosine tetraphosphatase; PFAM: metallophosphoesterase; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 3202512 10105144 Alide_3073 Alicycliphilus denitrificans BC bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YP_004127684.1 3201667 D 596153 CDS YP_004127685.1 319763748 10105145 complement(3202614..3203654) 1 NC_014910.1 PFAM: ApbE family lipoprotein; KEGG: dia:Dtpsy_1063 ApbE family lipoprotein; apbe family lipoprotein 3203654 10105145 Alide_3074 Alicycliphilus denitrificans BC apbe family lipoprotein YP_004127685.1 3202614 R 596153 CDS YP_004127686.1 319763749 10105146 complement(3203674..3204087) 1 NC_014910.1 PFAM: cytochrome c class I; KEGG: dia:Dtpsy_1062 cytochrome c class I; cytochrome c class i 3204087 10105146 Alide_3075 Alicycliphilus denitrificans BC cytochrome c class i YP_004127686.1 3203674 R 596153 CDS YP_004127687.1 319763750 10105147 3204315..3204674 1 NC_014910.1 KEGG: dia:Dtpsy_1061 hypothetical protein; hypothetical protein 3204674 10105147 Alide_3076 Alicycliphilus denitrificans BC hypothetical protein YP_004127687.1 3204315 D 596153 CDS YP_004127688.1 319763751 10105148 3204696..3206630 1 NC_014910.1 KEGG: ajs:Ajs_1139 nitrous-oxide reductase; PFAM: cytochrome c oxidase subunit II; nitrous-oxide reductase 3206630 10105148 Alide_3077 Alicycliphilus denitrificans BC nitrous-oxide reductase YP_004127688.1 3204696 D 596153 CDS YP_004127689.1 319763752 10105149 3206694..3209315 1 NC_014910.1 PFAM: FMN-binding domain protein; KEGG: dia:Dtpsy_1059 FMN-binding domain protein; fmn-binding domain-containing protein 3209315 10105149 Alide_3078 Alicycliphilus denitrificans BC fmn-binding domain-containing protein YP_004127689.1 3206694 D 596153 CDS YP_004127690.1 319763753 10105150 3209312..3210580 1 NC_014910.1 KEGG: dia:Dtpsy_1058 periplasmic copper-binding; PFAM: periplasmic copper-binding; SMART: Carbohydrate-binding and sugar hydrolysis; Parallel beta-helix repeat; copper-binding protein 3210580 10105150 Alide_3079 Alicycliphilus denitrificans BC copper-binding protein YP_004127690.1 3209312 D 596153 CDS YP_004127691.1 319763754 10105151 3210555..3211487 1 NC_014910.1 KEGG: dia:Dtpsy_1057 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3211487 10105151 Alide_3080 Alicycliphilus denitrificans BC ABC transporter YP_004127691.1 3210555 D 596153 CDS YP_004127692.1 319763755 10105152 3211503..3212318 1 NC_014910.1 KEGG: dia:Dtpsy_1056 ABC transporter; ABC transporter 3212318 10105152 Alide_3081 Alicycliphilus denitrificans BC ABC transporter YP_004127692.1 3211503 D 596153 CDS YP_004127693.1 319763756 10105153 3212315..3212851 1 NC_014910.1 KEGG: dia:Dtpsy_1055 NosL family protein; nosl family protein 3212851 10105153 Alide_3082 Alicycliphilus denitrificans BC nosl family protein YP_004127693.1 3212315 D 596153 CDS YP_004127694.1 319763757 10105154 3212912..3213511 1 NC_014910.1 KEGG: dia:Dtpsy_1054 hypothetical protein; hypothetical protein 3213511 10105154 Alide_3083 Alicycliphilus denitrificans BC hypothetical protein YP_004127694.1 3212912 D 596153 CDS YP_004127695.1 319763758 10105155 complement(3213612..3215054) 1 NC_014910.1 KEGG: dia:Dtpsy_1053 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; dead/deah box helicase domain-containing protein 3215054 10105155 Alide_3084 Alicycliphilus denitrificans BC dead/deah box helicase domain-containing protein YP_004127695.1 3213612 R 596153 CDS YP_004127696.1 319763759 10105156 complement(3215143..3216006) 1 NC_014910.1 PFAM: protein of unknown function zinc metallopeptidase; KEGG: dia:Dtpsy_1052 protein of unknown function zinc metallopeptidase putative; hypothetical protein 3216006 10105156 Alide_3085 Alicycliphilus denitrificans BC hypothetical protein YP_004127696.1 3215143 R 596153 CDS YP_004127697.1 319763760 10105157 complement(3216071..3216637) 1 NC_014910.1 TIGRFAM: deoxycytidine triphosphate deaminase; KEGG: dia:Dtpsy_1050 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 3216637 10105157 Alide_3086 Alicycliphilus denitrificans BC deoxycytidine triphosphate deaminase YP_004127697.1 3216071 R 596153 CDS YP_004127698.1 319763761 10105158 complement(3216755..3217972) 1 NC_014910.1 PFAM: protein of unknown function DUF989; KEGG: ajs:Ajs_1128 hypothetical protein; hypothetical protein 3217972 10105158 Alide_3087 Alicycliphilus denitrificans BC hypothetical protein YP_004127698.1 3216755 R 596153 CDS YP_004127699.1 319763762 10105159 complement(3218254..3219087) 1 NC_014910.1 TIGRFAM: xanthine dehydrogenase accessory protein XdhC; KEGG: ajs:Ajs_1125 hypothetical protein; xanthine dehydrogenase accessory protein xdhc 3219087 10105159 Alide_3088 Alicycliphilus denitrificans BC xanthine dehydrogenase accessory protein xdhc YP_004127699.1 3218254 R 596153 CDS YP_004127700.1 319763763 10105160 3219150..3219677 1 NC_014910.1 KEGG: dia:Dtpsy_1044 hypothetical protein; hypothetical protein 3219677 10105160 Alide_3089 Alicycliphilus denitrificans BC hypothetical protein YP_004127700.1 3219150 D 596153 CDS YP_004127701.1 319763764 10105161 complement(3219836..3220186) 1 NC_014910.1 TIGRFAM: hydroxyisourate hydrolase; KEGG: dia:Dtpsy_1043 hydroxyisourate hydrolase; PFAM: Transthyretin; hydroxyisourate hydrolase 3220186 10105161 Alide_3090 Alicycliphilus denitrificans BC hydroxyisourate hydrolase YP_004127701.1 3219836 R 596153 CDS YP_004127702.1 319763765 10105162 3220329..3222119 1 NC_014910.1 TIGRFAM: gamma-glutamyltransferase; KEGG: dac:Daci_2120 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 3222119 10105162 Alide_3091 Alicycliphilus denitrificans BC gamma-glutamyltransferase YP_004127702.1 3220329 D 596153 CDS YP_004127703.1 319763766 10105163 complement(3222116..3222661) 1 NC_014910.1 KEGG: dac:Daci_0940 hypothetical protein; hypothetical protein 3222661 10105163 Alide_3092 Alicycliphilus denitrificans BC hypothetical protein YP_004127703.1 3222116 R 596153 CDS YP_004127704.1 319763767 10105165 complement(3223154..3224068) 1 NC_014910.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: dac:Daci_2119 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 3224068 10105165 Alide_3094 Alicycliphilus denitrificans BC 2-hydroxy-3-oxopropionate reductase YP_004127704.1 3223154 R 596153 CDS YP_004127705.1 319763768 10105166 complement(3224116..3224916) 1 NC_014910.1 TIGRFAM: hydroxypyruvate isomerase; KEGG: ctt:CtCNB1_3709 xylose isomerase-like TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; hydroxypyruvate isomerase 3224916 10105166 Alide_3095 Alicycliphilus denitrificans BC hydroxypyruvate isomerase YP_004127705.1 3224116 R 596153 CDS YP_004127706.1 319763769 10105167 complement(3224946..3226736) 1 NC_014910.1 KEGG: dac:Daci_2117 glyoxylate carboligase; TIGRFAM: glyoxylate carboligase; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; glyoxylate carboligase 3226736 10105167 Alide_3096 Alicycliphilus denitrificans BC glyoxylate carboligase YP_004127706.1 3224946 R 596153 CDS YP_004127707.1 319763770 10105168 3226847..3227776 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_2116 LysR family transcriptional regulator; LysR family transcriptional regulator 3227776 10105168 Alide_3097 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127707.1 3226847 D 596153 CDS YP_004127708.1 319763771 10105169 complement(3227855..3228745) 1 NC_014910.1 KEGG: lch:Lcho_4024 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 3228745 10105169 Alide_3098 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127708.1 3227855 R 596153 CDS YP_004127709.1 319763772 10105170 complement(3228797..3230125) 1 NC_014910.1 PFAM: aminotransferase class-III; KEGG: bur:Bcep18194_B0665 aminotransferase; aminotransferase class-iii 3230125 10105170 Alide_3099 Alicycliphilus denitrificans BC aminotransferase class-iii YP_004127709.1 3228797 R 596153 CDS YP_004127710.1 319763773 10105171 3230323..3231216 1 NC_014910.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: tmz:Tmz1t_1334 transcriptional regulator, LysR family; LysR family transcriptional regulator 3231216 10105171 Alide_3100 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127710.1 3230323 D 596153 CDS YP_004127711.1 319763774 10105172 complement(3231244..3232566) 1 NC_014910.1 KEGG: ajs:Ajs_1122 hydroxypyruvate reductase; PFAM: MOFRL domain protein; hydroxypyruvate reductase 3232566 10105172 Alide_3101 Alicycliphilus denitrificans BC hydroxypyruvate reductase YP_004127711.1 3231244 R 596153 CDS YP_004127712.1 319763775 10105173 complement(3232645..3233628) 1 NC_014910.1 KEGG: dia:Dtpsy_1041 hypothetical protein; hypothetical protein 3233628 10105173 Alide_3102 Alicycliphilus denitrificans BC hypothetical protein YP_004127712.1 3232645 R 596153 CDS YP_004127713.1 319763776 10105174 complement(3233663..3234730) 1 NC_014910.1 TIGRFAM: tartrate dehydrogenase; KEGG: ajs:Ajs_1120 tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 3234730 10105174 Alide_3103 Alicycliphilus denitrificans BC tartrate dehydrogenase YP_004127713.1 3233663 R 596153 CDS YP_004127714.1 319763777 10105175 3234857..3235771 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_1039 transcriptional regulator, LysR family; LysR family transcriptional regulator 3235771 10105175 Alide_3104 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127714.1 3234857 D 596153 CDS YP_004127715.1 319763778 10105176 3235826..3236503 1 NC_014910.1 KEGG: dia:Dtpsy_1038 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3236503 10105176 Alide_3105 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004127715.1 3235826 D 596153 CDS YP_004127716.1 319763779 10105177 3236500..3237459 1 NC_014910.1 TIGRFAM: urate catabolism protein; KEGG: dia:Dtpsy_1037 urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein 3237459 10105177 Alide_3106 Alicycliphilus denitrificans BC urate catabolism protein YP_004127716.1 3236500 D 596153 CDS YP_004127717.1 319763780 10105178 3237524..3239299 1 NC_014910.1 TIGRFAM: amidase, hydantoinase/carbamoylase family; OHCU decarboxylase; KEGG: ajs:Ajs_1115 bifunctional OHCU decarboxylase/allantoate amidohydrolase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; peptidase M20; peptidase dimerisation domain protein; amidase 3239299 10105178 Alide_3107 Alicycliphilus denitrificans BC amidase YP_004127717.1 3237524 D 596153 CDS YP_004127718.1 319763781 10105179 3239296..3240549 1 NC_014910.1 PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: dia:Dtpsy_1035 peptidase dimerisation domain protein; peptidase dimerization domain-containing protein 3240549 10105179 Alide_3108 Alicycliphilus denitrificans BC peptidase dimerization domain-containing protein YP_004127718.1 3239296 D 596153 CDS YP_004127719.1 319763782 10105181 complement(3241738..3243213) 1 NC_014910.1 KEGG: dia:Dtpsy_2395 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; chemotaxis sensory transducer protein 3243213 10105181 Alide_3110 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004127719.1 3241738 R 596153 CDS YP_004127720.1 319763783 10105182 3243564..3245051 1 NC_014910.1 KEGG: dac:Daci_2107 xanthine permease; TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; xanthine permease 3245051 10105182 Alide_3111 Alicycliphilus denitrificans BC xanthine permease YP_004127720.1 3243564 D 596153 CDS YP_004127721.1 319763784 10105183 3245189..3247498 1 NC_014910.1 PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: ajs:Ajs_1112 malic enzyme; malic protein nad-binding protein 3247498 10105183 Alide_3112 Alicycliphilus denitrificans BC malic protein nad-binding protein YP_004127721.1 3245189 D 596153 CDS YP_004127722.1 319763785 10105184 complement(3247568..3248143) 1 NC_014910.1 PFAM: YceI family protein; KEGG: dia:Dtpsy_1028 YceI family protein; hypothetical protein 3248143 10105184 Alide_3113 Alicycliphilus denitrificans BC hypothetical protein YP_004127722.1 3247568 R 596153 CDS YP_004127723.1 319763786 10105185 complement(3248198..3248818) 1 NC_014910.1 PFAM: YceI family protein; KEGG: dia:Dtpsy_1027 YceI family protein; hypothetical protein 3248818 10105185 Alide_3114 Alicycliphilus denitrificans BC hypothetical protein YP_004127723.1 3248198 R 596153 CDS YP_004127724.1 319763787 10105186 complement(3248815..3249402) 1 NC_014910.1 KEGG: dia:Dtpsy_1026 cytochrome b561; cytochrome b561 3249402 10105186 Alide_3115 Alicycliphilus denitrificans BC cytochrome b561 YP_004127724.1 3248815 R 596153 CDS YP_004127725.1 319763788 10105187 3249660..3250349 1 NC_014910.1 KEGG: ajs:Ajs_1106 hypothetical protein; hypothetical protein 3250349 10105187 Alide_3116 Alicycliphilus denitrificans BC hypothetical protein YP_004127725.1 3249660 D 596153 CDS YP_004127726.1 319763789 10105188 3250527..3251015 1 NC_014910.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dia:Dtpsy_2562 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 3251015 10105188 Alide_3117 Alicycliphilus denitrificans BC alkyl hydroperoxide reductase YP_004127726.1 3250527 D 596153 CDS YP_004127727.1 319763790 10105189 3251172..3252911 1 NC_014910.1 KEGG: dia:Dtpsy_2563 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; phoh family protein 3252911 10105189 Alide_3118 Alicycliphilus denitrificans BC phoh family protein YP_004127727.1 3251172 D 596153 CDS YP_004127728.1 319763791 10105190 complement(3252983..3254515) 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: bpd:BURPS668_A2080 piperideine-6-carboxylate dehydrogenase; aldehyde dehydrogenase 3254515 10105190 Alide_3119 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004127728.1 3252983 R 596153 CDS YP_004127729.1 319763792 10105191 complement(3254586..3256064) 1 NC_014910.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: dia:Dtpsy_2565 replicative DNA helicase; SMART: AAA ATPase; replicative DNA helicase 3256064 10105191 Alide_3120 Alicycliphilus denitrificans BC replicative DNA helicase YP_004127729.1 3254586 R 596153 CDS YP_004127730.1 319763793 10105192 complement(3256186..3256638) 1 NC_014910.1 KEGG: dia:Dtpsy_2566 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like; 50S ribosomal protein L9 3256638 10105192 Alide_3121 Alicycliphilus denitrificans BC 50S ribosomal protein L9 YP_004127730.1 3256186 R 596153 CDS YP_004127731.1 319763794 10105193 complement(3256653..3256934) 1 NC_014910.1 KEGG: aav:Aave_1230 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; 30S ribosomal protein S18 3256934 10105193 Alide_3122 Alicycliphilus denitrificans BC 30S ribosomal protein S18 YP_004127731.1 3256653 R 596153 CDS YP_004127732.1 319763795 10105194 complement(3256953..3257243) 1 NC_014910.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dia:Dtpsy_2568 primosomal replication protein; single-strand binding protein/primosomal replication protein n 3257243 10105194 Alide_3123 Alicycliphilus denitrificans BC single-strand binding protein/primosomal replication protein n YP_004127732.1 3256953 R 596153 CDS YP_004127733.1 319763796 10105195 complement(3257266..3257640) 1 NC_014910.1 KEGG: dia:Dtpsy_2569 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; 30S ribosomal protein S6 3257640 10105195 Alide_3124 Alicycliphilus denitrificans BC 30S ribosomal protein S6 YP_004127733.1 3257266 R 596153 CDS YP_004127734.1 319763797 10105196 3257876..3258418 1 NC_014910.1 PFAM: GrpE protein; KEGG: dia:Dtpsy_2570 heat shock protein GrpE; heat shock protein GrpE 3258418 10105196 Alide_3125 Alicycliphilus denitrificans BC heat shock protein GrpE YP_004127734.1 3257876 D 596153 CDS YP_004127735.1 319763798 10105197 3258511..3260454 1 NC_014910.1 KEGG: dia:Dtpsy_2571 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; molecular chaperone DnaK 3260454 10105197 Alide_3126 Alicycliphilus denitrificans BC molecular chaperone DnaK YP_004127735.1 3258511 D 596153 CDS YP_004127736.1 319763799 10105198 3260550..3261683 1 NC_014910.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; KEGG: dia:Dtpsy_2572 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein; molecular chaperone DnaJ 3261683 10105198 Alide_3127 Alicycliphilus denitrificans BC molecular chaperone DnaJ YP_004127736.1 3260550 D 596153 CDS YP_004127737.1 319763800 10105199 3261898..3262563 1 NC_014910.1 PFAM: protein of unknown function DUF1555; KEGG: maq:Maqu_1010 hypothetical protein; hypothetical protein 3262563 10105199 Alide_3128 Alicycliphilus denitrificans BC hypothetical protein YP_004127737.1 3261898 D 596153 CDS YP_004127738.1 319763801 10105200 complement(3262636..3264006) 1 NC_014910.1 KEGG: rfr:Rfer_2475 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; tryptophanase 3264006 10105200 Alide_3129 Alicycliphilus denitrificans BC tryptophanase YP_004127738.1 3262636 R 596153 CDS YP_004127739.1 319763802 10105201 3264205..3265326 1 NC_014910.1 PFAM: peptidase U32; KEGG: ajs:Ajs_3220 peptidase U32; peptidase u32 3265326 10105201 Alide_3130 Alicycliphilus denitrificans BC peptidase u32 YP_004127739.1 3264205 D 596153 CDS YP_004127740.1 319763803 10105202 3265332..3266255 1 NC_014910.1 PFAM: peptidase U32; KEGG: ajs:Ajs_3221 peptidase U32; peptidase u32 3266255 10105202 Alide_3131 Alicycliphilus denitrificans BC peptidase u32 YP_004127740.1 3265332 D 596153 CDS YP_004127741.1 319763804 10105203 3266275..3266793 1 NC_014910.1 PFAM: Sterol-binding domain protein; KEGG: ajs:Ajs_3222 hypothetical protein; sterol-binding domain-containing protein 3266793 10105203 Alide_3132 Alicycliphilus denitrificans BC sterol-binding domain-containing protein YP_004127741.1 3266275 D 596153 CDS YP_004127742.1 319763805 10105204 3266790..3267197 1 NC_014910.1 PFAM: DGC domain protein; KEGG: ajs:Ajs_3223 hypothetical protein; dgc domain-containing protein 3267197 10105204 Alide_3133 Alicycliphilus denitrificans BC dgc domain-containing protein YP_004127742.1 3266790 D 596153 CDS YP_004127743.1 319763806 10105205 3267194..3267778 1 NC_014910.1 KEGG: dia:Dtpsy_2577 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3267778 10105205 Alide_3134 Alicycliphilus denitrificans BC 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_004127743.1 3267194 D 596153 CDS YP_004127744.1 319763807 10105206 3267834..3269318 1 NC_014910.1 KEGG: ajs:Ajs_3225 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; ubid family decarboxylase 3269318 10105206 Alide_3135 Alicycliphilus denitrificans BC ubid family decarboxylase YP_004127744.1 3267834 D 596153 CDS YP_004127745.1 319763808 10105207 3269337..3270485 1 NC_014910.1 PFAM: cytochrome P450; KEGG: ajs:Ajs_3226 cytochrome P450; cytochrome p450 3270485 10105207 Alide_3136 Alicycliphilus denitrificans BC cytochrome p450 YP_004127745.1 3269337 D 596153 CDS YP_004127746.1 319763809 10105208 3270526..3271890 1 NC_014910.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dia:Dtpsy_2580 beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase 3271890 10105208 Alide_3137 Alicycliphilus denitrificans BC RNA-metabolising metallo-beta-lactamase YP_004127746.1 3270526 D 596153 CDS YP_004127747.1 319763810 10105209 3272079..3273017 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_2581 transcriptional regulator, LysR family; LysR family transcriptional regulator 3273017 10105209 Alide_3138 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127747.1 3272079 D 596153 CDS YP_004127748.1 319763811 10105210 3273038..3274459 1 NC_014910.1 KEGG: ajs:Ajs_3229 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase large subunit 3274459 10105210 Alide_3139 Alicycliphilus denitrificans BC 3-isopropylmalate dehydratase large subunit YP_004127748.1 3273038 D 596153 CDS YP_004127749.1 319763812 10105211 3274483..3274608 1 NC_014910.1 PFAM: Entericidin EcnAB; KEGG: dac:Daci_5236 entericidin EcnAB; entericidin A/B 3274608 10105211 Alide_3140 Alicycliphilus denitrificans BC entericidin A/B YP_004127749.1 3274483 D 596153 CDS YP_004127750.1 319763813 10105212 3274632..3275282 1 NC_014910.1 KEGG: dia:Dtpsy_2585 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase small subunit 3275282 10105212 Alide_3141 Alicycliphilus denitrificans BC 3-isopropylmalate dehydratase small subunit YP_004127750.1 3274632 D 596153 CDS YP_004127751.1 319763814 10105213 3275357..3276427 1 NC_014910.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: dia:Dtpsy_2586 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3276427 10105213 Alide_3142 Alicycliphilus denitrificans BC 3-isopropylmalate dehydrogenase YP_004127751.1 3275357 D 596153 CDS YP_004127752.1 319763815 10105214 3276697..3277809 1 NC_014910.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: ctt:CtCNB1_1004 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase 3277809 10105214 Alide_3143 Alicycliphilus denitrificans BC aspartate-semialdehyde dehydrogenase YP_004127752.1 3276697 D 596153 CDS YP_004127753.1 319763816 10105215 3278032..3280704 1 NC_014910.1 TIGRFAM: FimV N-terminal domain; FimV C-terminal domain; KEGG: ajs:Ajs_3236 transmembrane protein; fimv n-terminal domain-containing protein 3280704 10105215 Alide_3144 Alicycliphilus denitrificans BC fimv n-terminal domain-containing protein YP_004127753.1 3278032 D 596153 CDS YP_004127754.1 319763817 10105216 3280769..3281587 1 NC_014910.1 KEGG: dia:Dtpsy_2590 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase a 3281587 10105216 Alide_3145 Alicycliphilus denitrificans BC tRNA pseudouridine synthase a YP_004127754.1 3280769 D 596153 CDS YP_004127755.1 319763818 10105217 3281584..3282300 1 NC_014910.1 KEGG: ajs:Ajs_3238 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 3282300 10105217 Alide_3146 Alicycliphilus denitrificans BC phosphoribosylanthranilate isomerase YP_004127755.1 3281584 D 596153 CDS YP_004127756.1 319763819 10105218 3282301..3283569 1 NC_014910.1 KEGG: ajs:Ajs_3239 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 3283569 10105218 Alide_3147 Alicycliphilus denitrificans BC tryptophan synthase subunit beta YP_004127756.1 3282301 D 596153 CDS YP_004127757.1 319763820 10105219 3283566..3284375 1 NC_014910.1 TIGRFAM: tryptophan synthase, alpha subunit; KEGG: ajs:Ajs_3240 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 3284375 10105219 Alide_3148 Alicycliphilus denitrificans BC tryptophan synthase subunit alpha YP_004127757.1 3283566 D 596153 CDS YP_004127758.1 319763821 10105220 3284404..3285276 1 NC_014910.1 KEGG: ajs:Ajs_3241 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: carboxyl transferase; acetyl-CoA carboxylase, carboxyl transferase subunit beta 3285276 10105220 Alide_3149 Alicycliphilus denitrificans BC acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_004127758.1 3284404 D 596153 CDS YP_004127759.1 319763822 10105221 complement(3285353..3285901) 1 NC_014910.1 PFAM: protein of unknown function YGGT; KEGG: dia:Dtpsy_2595 protein of unknown function YGGT; hypothetical protein 3285901 10105221 Alide_3150 Alicycliphilus denitrificans BC hypothetical protein YP_004127759.1 3285353 R 596153 CDS YP_004127760.1 319763823 10105222 3285995..3286630 1 NC_014910.1 KEGG: vei:Veis_4864 peptidase S16, lon domain-containing protein; PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; peptidase s16 lon domain-containing protein 3286630 10105222 Alide_3151 Alicycliphilus denitrificans BC peptidase s16 lon domain-containing protein YP_004127760.1 3285995 D 596153 CDS YP_004127761.1 319763824 10105223 3286667..3288568 1 NC_014910.1 PFAM: polysaccharide biosynthesis protein CapD; KEGG: pol:Bpro_3983 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein capd 3288568 10105223 Alide_3152 Alicycliphilus denitrificans BC polysaccharide biosynthesis protein capd YP_004127761.1 3286667 D 596153 CDS YP_004127762.1 319763825 10105224 3288565..3289797 1 NC_014910.1 PFAM: polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein; polysaccharide biosynthesis protein 3289797 10105224 Alide_3153 Alicycliphilus denitrificans BC polysaccharide biosynthesis protein YP_004127762.1 3288565 D 596153 CDS YP_004127763.1 319763826 10105225 3289781..3290383 1 NC_014910.1 KEGG: bpt:Bpet1526 acetyltransferase; acetyltransferase 3290383 10105225 Alide_3154 Alicycliphilus denitrificans BC acetyltransferase YP_004127763.1 3289781 D 596153 CDS YP_004127764.1 319763827 10105226 3290385..3291434 1 NC_014910.1 PFAM: glycosyl transferase group 1; KEGG: bpt:Bpet1525 glycosyltransferase; group 1 glycosyl transferase 3291434 10105226 Alide_3155 Alicycliphilus denitrificans BC group 1 glycosyl transferase YP_004127764.1 3290385 D 596153 CDS YP_004127765.1 319763828 10105227 3291431..3292459 1 NC_014910.1 PFAM: glycosyl transferase family 2; KEGG: bpt:Bpet1524 glycosyltransferase; family 2 glycosyl transferase 3292459 10105227 Alide_3156 Alicycliphilus denitrificans BC family 2 glycosyl transferase YP_004127765.1 3291431 D 596153 CDS YP_004127766.1 319763829 10105228 3292456..3293151 1 NC_014910.1 PFAM: Methyltransferase type 11; KEGG: mpt:Mpe_A0605 hypothetical protein; type 11 methyltransferase 3293151 10105228 Alide_3157 Alicycliphilus denitrificans BC type 11 methyltransferase YP_004127766.1 3292456 D 596153 CDS YP_004127767.1 319763830 10105229 3293148..3294320 1 NC_014910.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mpt:Mpe_A0607 lipopolysaccharide biosynthesis protein; degt/dnrj/eryc1/strs aminotransferase 3294320 10105229 Alide_3158 Alicycliphilus denitrificans BC degt/dnrj/eryc1/strs aminotransferase YP_004127767.1 3293148 D 596153 CDS YP_004127768.1 319763831 10105230 3294327..3294953 1 NC_014910.1 PFAM: sugar transferase; KEGG: lch:Lcho_0300 sugar transferase; sugar transferase 3294953 10105230 Alide_3159 Alicycliphilus denitrificans BC sugar transferase YP_004127768.1 3294327 D 596153 CDS YP_004127769.1 319763832 10105231 3294993..3296540 1 NC_014910.1 TIGRFAM: lysyl-tRNA synthetase; KEGG: ajs:Ajs_3250 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; lysyl-tRNA synthetase 3296540 10105231 Alide_3160 Alicycliphilus denitrificans BC lysyl-tRNA synthetase YP_004127769.1 3294993 D 596153 CDS YP_004127770.1 319763833 10105232 3296537..3297199 1 NC_014910.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_3252 small-conductance mechanosensitive channel-like protein; mscs mechanosensitive ion channel 3297199 10105232 Alide_3161 Alicycliphilus denitrificans BC mscs mechanosensitive ion channel YP_004127770.1 3296537 D 596153 CDS YP_004127771.1 319763834 10105233 3297392..3298510 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_4331 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 3298510 10105233 Alide_3162 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127771.1 3297392 D 596153 CDS YP_004127772.1 319763835 10105234 3298631..3299557 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2607 inner-membrane translocator; inner-membrane translocator 3299557 10105234 Alide_3163 Alicycliphilus denitrificans BC inner-membrane translocator YP_004127772.1 3298631 D 596153 CDS YP_004127773.1 319763836 10105235 3299557..3300816 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_2608 leucine/isoleucine/valine transporter permease subunit; inner-membrane translocator 3300816 10105235 Alide_3164 Alicycliphilus denitrificans BC inner-membrane translocator YP_004127773.1 3299557 D 596153 CDS YP_004127774.1 319763837 10105236 3300816..3301589 1 NC_014910.1 KEGG: dac:Daci_4334 leucine/isoleucine/valine transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3301589 10105236 Alide_3165 Alicycliphilus denitrificans BC ABC transporter YP_004127774.1 3300816 D 596153 CDS YP_004127775.1 319763838 10105237 3301589..3302299 1 NC_014910.1 KEGG: dia:Dtpsy_2610 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3302299 10105237 Alide_3166 Alicycliphilus denitrificans BC ABC transporter YP_004127775.1 3301589 D 596153 CDS YP_004127776.1 319763839 10105238 complement(3302380..3303447) 1 NC_014910.1 PFAM: phosphofructokinase; KEGG: ajs:Ajs_3260 6-phosphofructokinase; phosphofructokinase 3303447 10105238 Alide_3167 Alicycliphilus denitrificans BC phosphofructokinase YP_004127776.1 3302380 R 596153 CDS YP_004127777.1 319763840 10105239 complement(3303444..3304526) 1 NC_014910.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: dia:Dtpsy_2614 beta-N-acetylhexosaminidase; glycoside hydrolase family protein 3304526 10105239 Alide_3168 Alicycliphilus denitrificans BC glycoside hydrolase family protein YP_004127777.1 3303444 R 596153 CDS YP_004127778.1 319763841 10105240 complement(3304591..3304983) 1 NC_014910.1 KEGG: dia:Dtpsy_2615 4'-phosphopantetheinyl transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-(acyl-carrier-protein) synthase 3304983 10105240 Alide_3169 Alicycliphilus denitrificans BC holo-(acyl-carrier-protein) synthase YP_004127778.1 3304591 R 596153 CDS YP_004127779.1 319763842 10105241 complement(3305041..3305808) 1 NC_014910.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: dia:Dtpsy_2616 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein pdxj 3305808 10105241 Alide_3170 Alicycliphilus denitrificans BC pyridoxal phosphate biosynthetic protein pdxj YP_004127779.1 3305041 R 596153 CDS YP_004127780.1 319763843 10105242 complement(3305805..3306578) 1 NC_014910.1 KEGG: ajs:Ajs_3265 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; DNA repair protein reco 3306578 10105242 Alide_3171 Alicycliphilus denitrificans BC DNA repair protein reco YP_004127780.1 3305805 R 596153 CDS YP_004127781.1 319763844 10105243 complement(3306800..3307741) 1 NC_014910.1 KEGG: dia:Dtpsy_2619 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; GTP-binding protein Era 3307741 10105243 Alide_3172 Alicycliphilus denitrificans BC GTP-binding protein Era YP_004127781.1 3306800 R 596153 CDS YP_004127782.1 319763845 10105244 complement(3307810..3308496) 1 NC_014910.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: ajs:Ajs_3267 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease iii 3308496 10105244 Alide_3173 Alicycliphilus denitrificans BC ribonuclease iii YP_004127782.1 3307810 R 596153 CDS YP_004127783.1 319763846 10105245 complement(3308499..3308864) 1 NC_014910.1 KEGG: dia:Dtpsy_2621 transmembrane protein; transmembrane protein 3308864 10105245 Alide_3174 Alicycliphilus denitrificans BC transmembrane protein YP_004127783.1 3308499 R 596153 CDS YP_004127784.1 319763847 10105246 complement(3308878..3309852) 1 NC_014910.1 KEGG: dia:Dtpsy_2622 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region; signal peptidase i 3309852 10105246 Alide_3175 Alicycliphilus denitrificans BC signal peptidase i YP_004127784.1 3308878 R 596153 CDS YP_004127785.1 319763848 10105247 complement(3309859..3311667) 1 NC_014910.1 KEGG: dia:Dtpsy_2623 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein LepA 3311667 10105247 Alide_3176 Alicycliphilus denitrificans BC GTP-binding protein LepA YP_004127785.1 3309859 R 596153 CDS YP_004127786.1 319763849 10105248 complement(3312092..3313573) 1 NC_014910.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: dia:Dtpsy_2624 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 3313573 10105248 Alide_3177 Alicycliphilus denitrificans BC protease Do YP_004127786.1 3312092 R 596153 CDS YP_004127787.1 319763850 10105249 complement(3313683..3314681) 1 NC_014910.1 KEGG: dia:Dtpsy_2625 sigma E regulatory protein, MucB/RseB; manually curated; PFAM: MucB/RseB family protein; mucb/rseb family protein 3314681 10105249 Alide_3178 Alicycliphilus denitrificans BC mucb/rseb family protein YP_004127787.1 3313683 R 596153 CDS YP_004127788.1 319763851 10105250 complement(3314792..3315442) 1 NC_014910.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: dia:Dtpsy_2626 anti sigma-E protein, RseA; anti sigma-e protein rsea family protein 3315442 10105250 Alide_3179 Alicycliphilus denitrificans BC anti sigma-e protein rsea family protein YP_004127788.1 3314792 R 596153 CDS YP_004127789.1 319763852 10105251 complement(3315467..3316102) 1 NC_014910.1 KEGG: dia:Dtpsy_2627 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; RNA polymerase sigma factor rpoe 3316102 10105251 Alide_3180 Alicycliphilus denitrificans BC RNA polymerase sigma factor rpoe YP_004127789.1 3315467 R 596153 CDS YP_004127790.1 319763853 10105252 complement(3316099..3316620) 1 NC_014910.1 KEGG: dia:Dtpsy_2628 hypothetical protein; hypothetical protein 3316620 10105252 Alide_3181 Alicycliphilus denitrificans BC hypothetical protein YP_004127790.1 3316099 R 596153 CDS YP_004127791.1 319763854 10105253 complement(3316683..3317927) 1 NC_014910.1 KEGG: dia:Dtpsy_2629 3-oxoacyl-(acyl-carrier-protein) synthase 2; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; 3-oxoacyl-ACP synthase 3317927 10105253 Alide_3182 Alicycliphilus denitrificans BC 3-oxoacyl-ACP synthase YP_004127791.1 3316683 R 596153 CDS YP_004127792.1 319763855 10105254 complement(3317986..3318225) 1 NC_014910.1 KEGG: ctt:CtCNB1_0973 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; acyl carrier protein 3318225 10105254 Alide_3183 Alicycliphilus denitrificans BC acyl carrier protein YP_004127792.1 3317986 R 596153 CDS YP_004127793.1 319763856 10105255 complement(3318329..3319066) 1 NC_014910.1 KEGG: dia:Dtpsy_2631 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 3319066 10105255 Alide_3184 Alicycliphilus denitrificans BC 3-oxoacyl-ACP reductase YP_004127793.1 3318329 R 596153 CDS YP_004127794.1 319763857 10105256 complement(3319063..3320016) 1 NC_014910.1 KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase 3320016 10105256 Alide_3185 Alicycliphilus denitrificans BC malonyl CoA-acyl carrier protein transacylase YP_004127794.1 3319063 R 596153 CDS YP_004127795.1 319763858 10105257 complement(3320078..3321058) 1 NC_014910.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: dia:Dtpsy_2633 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase 3321058 10105257 Alide_3186 Alicycliphilus denitrificans BC 3-oxoacyl-ACP synthase YP_004127795.1 3320078 R 596153 CDS YP_004127796.1 319763859 10105258 complement(3321080..3322111) 1 NC_014910.1 manually curated; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; KEGG: dia:Dtpsy_2634 glycerol-3-phosphate acyltransferase PlsX; PFAM: fatty acid synthesis plsX protein; fatty acid/phospholipid synthesis protein PlsX 3322111 10105258 Alide_3187 Alicycliphilus denitrificans BC fatty acid/phospholipid synthesis protein PlsX YP_004127796.1 3321080 R 596153 CDS YP_004127797.1 319763860 10105259 complement(3322234..3322416) 1 NC_014910.1 KEGG: aav:Aave_1181 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; 50S ribosomal protein L32 3322416 10105259 Alide_3188 Alicycliphilus denitrificans BC 50S ribosomal protein L32 YP_004127797.1 3322234 R 596153 CDS YP_004127798.1 319763861 10105260 complement(3322553..3323104) 1 NC_014910.1 PFAM: protein of unknown function DUF177; KEGG: dia:Dtpsy_2636 protein of unknown function DUF177; hypothetical protein 3323104 10105260 Alide_3189 Alicycliphilus denitrificans BC hypothetical protein YP_004127798.1 3322553 R 596153 CDS YP_004127799.1 319763862 10105261 3323131..3323730 1 NC_014910.1 KEGG: dia:Dtpsy_2637 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 3323730 10105261 Alide_3190 Alicycliphilus denitrificans BC maf protein YP_004127799.1 3323131 D 596153 CDS YP_004127800.1 319763863 10105262 3323727..3324512 1 NC_014910.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dia:Dtpsy_2638 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase 3324512 10105262 Alide_3191 Alicycliphilus denitrificans BC uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase YP_004127800.1 3323727 D 596153 CDS YP_004127801.1 319763864 10105263 complement(3324517..3325557) 1 NC_014910.1 PFAM: peptidase S49; KEGG: dia:Dtpsy_2639 peptidase S49; peptidase s49 3325557 10105263 Alide_3192 Alicycliphilus denitrificans BC peptidase s49 YP_004127801.1 3324517 R 596153 CDS YP_004127802.1 319763865 10105264 complement(3325562..3325933) 1 NC_014910.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: dia:Dtpsy_2640 Rieske (2Fe-2S) domain protein; rieske (2fe-2S) iron-sulfur domain-containing protein 3325933 10105264 Alide_3193 Alicycliphilus denitrificans BC rieske (2fe-2S) iron-sulfur domain-containing protein YP_004127802.1 3325562 R 596153 CDS YP_004127803.1 319763866 10105265 complement(3325936..3326607) 1 NC_014910.1 KEGG: dia:Dtpsy_2641 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 3326607 10105265 Alide_3194 Alicycliphilus denitrificans BC HAD-superfamily hydrolase YP_004127803.1 3325936 R 596153 CDS YP_004127804.1 319763867 10105266 complement(3326600..3327619) 1 NC_014910.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; Zinc finger, FLYWCH-type; KEGG: dia:Dtpsy_2642 pseudouridine synthase, RluA family; SMART: RNA-binding S4 domain protein; pseudouridine synthase 3327619 10105266 Alide_3195 Alicycliphilus denitrificans BC pseudouridine synthase YP_004127804.1 3326600 R 596153 CDS YP_004127805.1 319763868 10105267 3328209..3331277 1 NC_014910.1 KEGG: ajs:Ajs_3290 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; ribonuclease, rne/rng family 3331277 10105267 Alide_3196 Alicycliphilus denitrificans BC ribonuclease, rne/rng family YP_004127805.1 3328209 D 596153 CDS YP_004127806.1 319763869 10105268 3331436..3332209 1 NC_014910.1 PFAM: protein of unknown function DUF328; KEGG: dia:Dtpsy_2644 hypothetical protein; hypothetical protein 3332209 10105268 Alide_3197 Alicycliphilus denitrificans BC hypothetical protein YP_004127806.1 3331436 D 596153 CDS YP_004127807.1 319763870 10105269 3332206..3333060 1 NC_014910.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; procollagen-proline dioxygenase 3333060 10105269 Alide_3198 Alicycliphilus denitrificans BC procollagen-proline dioxygenase YP_004127807.1 3332206 D 596153 CDS YP_004127808.1 319763871 10105270 3333116..3333961 1 NC_014910.1 TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: ajs:Ajs_3294 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; 7-cyano-7-deazaguanine reductase 3333961 10105270 Alide_3199 Alicycliphilus denitrificans BC 7-cyano-7-deazaguanine reductase YP_004127808.1 3333116 D 596153 CDS YP_004127809.1 319763872 10105271 complement(3333991..3335553) 1 NC_014910.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; KEGG: dia:Dtpsy_2648 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAC repeat-containing protein; pas sensor protein 3335553 10105271 Alide_3200 Alicycliphilus denitrificans BC pas sensor protein YP_004127809.1 3333991 R 596153 CDS YP_004127810.1 319763873 10105272 complement(3335715..3336908) 1 NC_014910.1 KEGG: aav:Aave_1964 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 3336908 10105272 Alide_3201 Alicycliphilus denitrificans BC DNA-directed DNA polymerase YP_004127810.1 3335715 R 596153 CDS YP_004127811.1 319763874 10105273 complement(3336984..3337877) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbr:BB0984 LysR family transcriptional regulator; LysR family transcriptional regulator 3337877 10105273 Alide_3202 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127811.1 3336984 R 596153 CDS YP_004127812.1 319763875 10105274 3338014..3338982 1 NC_014910.1 KEGG: bbr:BB0983 hypothetical protein; hypothetical protein 3338982 10105274 Alide_3203 Alicycliphilus denitrificans BC hypothetical protein YP_004127812.1 3338014 D 596153 CDS YP_004127813.1 319763876 10105275 3339013..3340239 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB0982 hypothetical protein; l-carnitine dehydratase/bile acid-inducible protein f 3340239 10105275 Alide_3204 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127813.1 3339013 D 596153 CDS YP_004127814.1 319763877 10105276 3340276..3342114 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB0981 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3342114 10105276 Alide_3205 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127814.1 3340276 D 596153 CDS YP_004127815.1 319763878 10105277 complement(3342127..3343059) 1 NC_014910.1 KEGG: dia:Dtpsy_2650 hypothetical protein; hypothetical protein 3343059 10105277 Alide_3206 Alicycliphilus denitrificans BC hypothetical protein YP_004127815.1 3342127 R 596153 CDS YP_004127816.1 319763879 10105278 complement(3343232..3344404) 1 NC_014910.1 KEGG: ajs:Ajs_3298 (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; l-lactate dehydrogenase (cytochrome) 3344404 10105278 Alide_3207 Alicycliphilus denitrificans BC l-lactate dehydrogenase (cytochrome) YP_004127816.1 3343232 R 596153 CDS YP_004127817.1 319763880 10105279 complement(3344496..3345011) 1 NC_014910.1 PFAM: OmpA/MotB domain protein; KEGG: dac:Daci_3484 OmpA/MotB domain-containing protein; ompa/motb domain-containing protein 3345011 10105279 Alide_3208 Alicycliphilus denitrificans BC ompa/motb domain-containing protein YP_004127817.1 3344496 R 596153 CDS YP_004127818.1 319763881 10105280 complement(3345008..3346240) 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dac:Daci_3483 diguanylate cyclase; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein; diguanylate cyclase 3346240 10105280 Alide_3209 Alicycliphilus denitrificans BC diguanylate cyclase YP_004127818.1 3345008 R 596153 CDS YP_004127819.1 319763882 10105281 complement(3346261..3346782) 1 NC_014910.1 KEGG: dac:Daci_3482 hypothetical protein; hypothetical protein 3346782 10105281 Alide_3210 Alicycliphilus denitrificans BC hypothetical protein YP_004127819.1 3346261 R 596153 CDS YP_004127820.1 319763883 10105282 complement(3346847..3349012) 1 NC_014910.1 TIGRFAM: penicillin-binding protein 1C; KEGG: ajs:Ajs_3299 penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; penicillin-binding protein 1c 3349012 10105282 Alide_3211 Alicycliphilus denitrificans BC penicillin-binding protein 1c YP_004127820.1 3346847 R 596153 CDS YP_004127821.1 319763884 10105283 complement(3349012..3349893) 1 NC_014910.1 KEGG: dia:Dtpsy_2653 hypothetical protein; hypothetical protein 3349893 10105283 Alide_3212 Alicycliphilus denitrificans BC hypothetical protein YP_004127821.1 3349012 R 596153 CDS YP_004127822.1 319763885 10105284 complement(3350218..3351465) 1 NC_014910.1 KEGG: bbr:BB0464 dehydratase/racemase; dehydratase/racemase 3351465 10105284 Alide_3213 Alicycliphilus denitrificans BC dehydratase/racemase YP_004127822.1 3350218 R 596153 CDS YP_004127823.1 319763886 10105285 complement(3351599..3353248) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: app:CAP2UW1_2497 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 3353248 10105285 Alide_3214 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127823.1 3351599 R 596153 CDS YP_004127824.1 319763887 10105286 complement(3353245..3355344) 1 NC_014910.1 PFAM: CoA-binding domain protein; KEGG: dac:Daci_1885 CoA-binding domain-containing protein; CoA-binding protein 3355344 10105286 Alide_3215 Alicycliphilus denitrificans BC CoA-binding protein YP_004127824.1 3353245 R 596153 CDS YP_004127825.1 319763888 10105287 complement(3355344..3356501) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rme:Rmet_5425 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase 3356501 10105287 Alide_3216 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127825.1 3355344 R 596153 CDS YP_004127826.1 319763889 10105288 complement(3356541..3357536) 1 NC_014910.1 KEGG: mms:mma_1624 L-asparaginase; PFAM: Asparaginase/glutaminase; asparaginase 3357536 10105288 Alide_3217 Alicycliphilus denitrificans BC asparaginase YP_004127826.1 3356541 R 596153 CDS YP_004127827.1 319763890 10105289 complement(3357544..3358536) 1 NC_014910.1 KEGG: vap:Vapar_4821 hypothetical protein; hypothetical protein 3358536 10105289 Alide_3218 Alicycliphilus denitrificans BC hypothetical protein YP_004127827.1 3357544 R 596153 CDS YP_004127828.1 319763891 10105290 3358669..3359550 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2067 LysR family transcriptional regulator; LysR family transcriptional regulator 3359550 10105290 Alide_3219 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127828.1 3358669 D 596153 CDS YP_004127829.1 319763892 10105291 complement(3359657..3360739) 1 NC_014910.1 PFAM: metallophosphoesterase; KEGG: dac:Daci_4972 metallophosphoesterase; metallophosphoesterase 3360739 10105291 Alide_3220 Alicycliphilus denitrificans BC metallophosphoesterase YP_004127829.1 3359657 R 596153 CDS YP_004127830.1 319763893 10105292 complement(3360774..3366710) 1 NC_014910.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: dia:Dtpsy_2661 alpha-2-macroglobulin domain protein; alpha-2-macroglobulin 3366710 10105292 Alide_3221 Alicycliphilus denitrificans BC alpha-2-macroglobulin YP_004127830.1 3360774 R 596153 CDS YP_004127831.1 319763894 10105293 complement(3366842..3367816) 1 NC_014910.1 KEGG: ajs:Ajs_3311 hypothetical protein; hypothetical protein 3367816 10105293 Alide_3222 Alicycliphilus denitrificans BC hypothetical protein YP_004127831.1 3366842 R 596153 CDS YP_004127832.1 319763895 10105294 complement(3367834..3369294) 1 NC_014910.1 KEGG: dia:Dtpsy_2664 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; argininosuccinate lyase 3369294 10105294 Alide_3223 Alicycliphilus denitrificans BC argininosuccinate lyase YP_004127832.1 3367834 R 596153 CDS YP_004127833.1 319763896 10105295 3369345..3370409 1 NC_014910.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: ajs:Ajs_3313 histidine kinase internal region; histidine kinase internal region protein 3370409 10105295 Alide_3224 Alicycliphilus denitrificans BC histidine kinase internal region protein YP_004127833.1 3369345 D 596153 CDS YP_004127834.1 319763897 10105296 3370546..3371331 1 NC_014910.1 KEGG: dia:Dtpsy_2507 lipoprotein, YaeC family; TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; lipoprotein, yaec family 3371331 10105296 Alide_3225 Alicycliphilus denitrificans BC lipoprotein, yaec family YP_004127834.1 3370546 D 596153 CDS YP_004127835.1 319763898 10105297 complement(3371458..3373089) 1 NC_014910.1 PFAM: SpoVR family protein; KEGG: dac:Daci_2329 SpoVR family protein; spovr family protein 3373089 10105297 Alide_3226 Alicycliphilus denitrificans BC spovr family protein YP_004127835.1 3371458 R 596153 CDS YP_004127836.1 319763899 10105298 complement(3373086..3374354) 1 NC_014910.1 PFAM: protein of unknown function DUF444; KEGG: dac:Daci_2328 hypothetical protein; hypothetical protein 3374354 10105298 Alide_3227 Alicycliphilus denitrificans BC hypothetical protein YP_004127836.1 3373086 R 596153 CDS YP_004127837.1 319763900 10105299 complement(3374399..3376321) 1 NC_014910.1 KEGG: ctt:CtCNB1_1949 serine protein kinase, PrkA; PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; prka aaa domain-containing protein 3376321 10105299 Alide_3228 Alicycliphilus denitrificans BC prka aaa domain-containing protein YP_004127837.1 3374399 R 596153 CDS YP_004127838.1 319763901 10105300 complement(3376622..3377113) 1 NC_014910.1 KEGG: dia:Dtpsy_2510 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; rrf2 family transcriptional regulator 3377113 10105300 Alide_3229 Alicycliphilus denitrificans BC rrf2 family transcriptional regulator YP_004127838.1 3376622 R 596153 CDS YP_004127839.1 319763902 10105301 3377208..3377930 1 NC_014910.1 KEGG: dia:Dtpsy_2511 hemerythrin HHE cation binding domain protein; TIGRFAM: iron-sulfur cluster repair di-iron protein; PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; iron-sulfur cluster repair di-iron protein 3377930 10105301 Alide_3230 Alicycliphilus denitrificans BC iron-sulfur cluster repair di-iron protein YP_004127839.1 3377208 D 596153 CDS YP_004127840.1 319763903 10105302 3377933..3378304 1 NC_014910.1 KEGG: aav:Aave_1570 globin-like protein; globin-like protein 3378304 10105302 Alide_3231 Alicycliphilus denitrificans BC globin-like protein YP_004127840.1 3377933 D 596153 CDS YP_004127841.1 319763904 10105303 complement(3378301..3378525) 1 NC_014910.1 KEGG: dia:Dtpsy_2512 hypothetical protein; hypothetical protein 3378525 10105303 Alide_3232 Alicycliphilus denitrificans BC hypothetical protein YP_004127841.1 3378301 R 596153 CDS YP_004127842.1 319763905 10105304 complement(3378525..3378965) 1 NC_014910.1 KEGG: ajs:Ajs_3166 hypothetical protein; hypothetical protein 3378965 10105304 Alide_3233 Alicycliphilus denitrificans BC hypothetical protein YP_004127842.1 3378525 R 596153 CDS YP_004127843.1 319763906 10105305 complement(3378968..3379969) 1 NC_014910.1 PFAM: aldo/keto reductase; KEGG: ajs:Ajs_3167 aldo/keto reductase; aldo/keto reductase 3379969 10105305 Alide_3234 Alicycliphilus denitrificans BC aldo/keto reductase YP_004127843.1 3378968 R 596153 CDS YP_004127844.1 319763907 10105306 complement(3380047..3380247) 1 NC_014910.1 KEGG: dia:Dtpsy_2515 SlyX family protein; slyx family protein 3380247 10105306 Alide_3235 Alicycliphilus denitrificans BC slyx family protein YP_004127844.1 3380047 R 596153 CDS YP_004127845.1 319763908 10105307 complement(3380249..3381442) 1 NC_014910.1 PFAM: aminotransferase class I and II; KEGG: aav:Aave_1563 GntR family transcriptional regulator; aminotransferase class i and ii 3381442 10105307 Alide_3236 Alicycliphilus denitrificans BC aminotransferase class i and ii YP_004127845.1 3380249 R 596153 CDS YP_004127846.1 319763909 10105308 3381595..3382065 1 NC_014910.1 PFAM: transcription activator effector binding; KEGG: dac:Daci_3099 AraC family transcriptional regulator; transcription activator effector binding protein 3382065 10105308 Alide_3237 Alicycliphilus denitrificans BC transcription activator effector binding protein YP_004127846.1 3381595 D 596153 CDS YP_004127847.1 319763910 10105309 complement(3382062..3383048) 1 NC_014910.1 KEGG: dac:Daci_2828 hypothetical protein; hypothetical protein 3383048 10105309 Alide_3238 Alicycliphilus denitrificans BC hypothetical protein YP_004127847.1 3382062 R 596153 CDS YP_004127848.1 319763911 10105310 complement(3383083..3384546) 1 NC_014910.1 PFAM: Amidase; KEGG: dac:Daci_2827 amidase; amidase 3384546 10105310 Alide_3239 Alicycliphilus denitrificans BC amidase YP_004127848.1 3383083 R 596153 CDS YP_004127849.1 319763912 10105311 3384657..3385610 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_2826 LysR family transcriptional regulator; LysR family transcriptional regulator 3385610 10105311 Alide_3240 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004127849.1 3384657 D 596153 CDS YP_004127850.1 319763913 10105312 3385607..3386245 1 NC_014910.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: ajs:Ajs_3170 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease iii 3386245 10105312 Alide_3241 Alicycliphilus denitrificans BC endonuclease iii YP_004127850.1 3385607 D 596153 CDS YP_004127851.1 319763914 10105313 complement(3386262..3386765) 1 NC_014910.1 KEGG: pag:PLES_35831 hypothetical protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; appr-1-p processing domain-containing protein 3386765 10105313 Alide_3242 Alicycliphilus denitrificans BC appr-1-p processing domain-containing protein YP_004127851.1 3386262 R 596153 CDS YP_004127852.1 319763915 10105314 complement(3386855..3387913) 1 NC_014910.1 TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: ajs:Ajs_3176 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3387913 10105314 Alide_3243 Alicycliphilus denitrificans BC nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_004127852.1 3386855 R 596153 CDS YP_004127853.1 319763916 10105315 complement(3387972..3389444) 1 NC_014910.1 KEGG: ajs:Ajs_3178 adenosylcobyric acid synthase (glutamine-hydrolysing); TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyric acid synthase cobq 3389444 10105315 Alide_3244 Alicycliphilus denitrificans BC cobyric acid synthase cobq YP_004127853.1 3387972 R 596153 CDS YP_004127854.1 319763917 10105316 complement(3389441..3390427) 1 NC_014910.1 PFAM: aminotransferase class I and II; KEGG: dia:Dtpsy_2532 aminotransferase class I and II; aminotransferase class i and ii 3390427 10105316 Alide_3245 Alicycliphilus denitrificans BC aminotransferase class i and ii YP_004127854.1 3389441 R 596153 CDS YP_004127855.1 319763918 10105317 complement(3390420..3391394) 1 NC_014910.1 KEGG: ajs:Ajs_3180 adenosylcobinamide-phosphate synthase; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein cobd 3391394 10105317 Alide_3246 Alicycliphilus denitrificans BC cobalamin biosynthesis protein cobd YP_004127855.1 3390420 R 596153 CDS YP_004127856.1 319763919 10105318 3391603..3392109 1 NC_014910.1 KEGG: ajs:Ajs_3182 type-4 fimbrial pilin related signal peptide protein; type-4 fimbrial pilin-like protein 3392109 10105318 Alide_3247 Alicycliphilus denitrificans BC type-4 fimbrial pilin-like protein YP_004127856.1 3391603 D 596153 CDS YP_004127857.1 319763920 10105319 3392116..3392757 1 NC_014910.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: dac:Daci_5194 type IV pilus modification protein PilV; type IV pilus modification protein pilv 3392757 10105319 Alide_3248 Alicycliphilus denitrificans BC type IV pilus modification protein pilv YP_004127857.1 3392116 D 596153 CDS YP_004127858.1 319763921 10105320 3392760..3393635 1 NC_014910.1 KEGG: dac:Daci_5195 hypothetical protein; hypothetical protein 3393635 10105320 Alide_3249 Alicycliphilus denitrificans BC hypothetical protein YP_004127858.1 3392760 D 596153 CDS YP_004127859.1 319763922 10105321 3393647..3394396 1 NC_014910.1 KEGG: dac:Daci_5196 hypothetical protein; hypothetical protein 3394396 10105321 Alide_3250 Alicycliphilus denitrificans BC hypothetical protein YP_004127859.1 3393647 D 596153 CDS YP_004127860.1 319763923 10105322 3394488..3398225 1 NC_014910.1 KEGG: dac:Daci_5197 FG-GAP repeat-containing protein; hypothetical protein 3398225 10105322 Alide_3251 Alicycliphilus denitrificans BC hypothetical protein YP_004127860.1 3394488 D 596153 CDS YP_004127861.1 319763924 10105323 3398236..3398670 1 NC_014910.1 KEGG: dia:Dtpsy_2540 fimbrial protein pilin; fimbrial protein pilin 3398670 10105323 Alide_3252 Alicycliphilus denitrificans BC fimbrial protein pilin YP_004127861.1 3398236 D 596153 CDS YP_004127862.1 319763925 10105324 3398708..3399820 1 NC_014910.1 TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: dia:Dtpsy_2542 riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein ribd 3399820 10105324 Alide_3253 Alicycliphilus denitrificans BC riboflavin biosynthesis protein ribd YP_004127862.1 3398708 D 596153 CDS YP_004127863.1 319763926 10105325 3399844..3401454 1 NC_014910.1 KEGG: dia:Dtpsy_2543 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; phospholipase d/transphosphatidylase 3401454 10105325 Alide_3254 Alicycliphilus denitrificans BC phospholipase d/transphosphatidylase YP_004127863.1 3399844 D 596153 CDS YP_004127864.1 319763927 10105326 complement(3401414..3402433) 1 NC_014910.1 PFAM: dihydrouridine synthase DuS; KEGG: dia:Dtpsy_2544 dihydrouridine synthase DuS; dihydrouridine synthase dus 3402433 10105326 Alide_3255 Alicycliphilus denitrificans BC dihydrouridine synthase dus YP_004127864.1 3401414 R 596153 CDS YP_004127865.1 319763928 10105327 complement(3402489..3403628) 1 NC_014910.1 PFAM: methyltransferase small; KEGG: aav:Aave_1253 methyltransferase small; methyltransferase small 3403628 10105327 Alide_3256 Alicycliphilus denitrificans BC methyltransferase small YP_004127865.1 3402489 R 596153 CDS YP_004127866.1 319763929 10105328 complement(3403654..3404175) 1 NC_014910.1 KEGG: dia:Dtpsy_2546 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase 3404175 10105328 Alide_3257 Alicycliphilus denitrificans BC Gcn5-like N-acetyltransferase YP_004127866.1 3403654 R 596153 CDS YP_004127867.1 319763930 10105329 complement(3404252..3405712) 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: dia:Dtpsy_2547 aldehyde dehydrogenase; aldehyde dehydrogenase 3405712 10105329 Alide_3258 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004127867.1 3404252 R 596153 CDS YP_004127868.1 319763931 10105330 complement(3405832..3406194) 1 NC_014910.1 KEGG: dia:Dtpsy_2549 hypothetical protein; hypothetical protein 3406194 10105330 Alide_3259 Alicycliphilus denitrificans BC hypothetical protein YP_004127868.1 3405832 R 596153 CDS YP_004127869.1 319763932 10105331 complement(3406210..3408813) 1 NC_014910.1 TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: dia:Dtpsy_2550 ATP-dependent chaperone ClpB; SMART: AAA ATPase; ATP-dependent chaperone clpb 3408813 10105331 Alide_3260 Alicycliphilus denitrificans BC ATP-dependent chaperone clpb YP_004127869.1 3406210 R 596153 CDS YP_004127870.1 319763933 10105332 complement(3408881..3409357) 1 NC_014910.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ajs:Ajs_3199 molybdopterin synthase subunit MoaE; molybdopterin biosynthesis moae protein 3409357 10105332 Alide_3261 Alicycliphilus denitrificans BC molybdopterin biosynthesis moae protein YP_004127870.1 3408881 R 596153 CDS YP_004127871.1 319763934 10105333 3409414..3409668 1 NC_014910.1 KEGG: dia:Dtpsy_2552 hypothetical protein; hypothetical protein 3409668 10105333 Alide_3262 Alicycliphilus denitrificans BC hypothetical protein YP_004127871.1 3409414 D 596153 CDS YP_004127872.1 319763935 10105334 3409781..3409924 1 NC_014910.1 KEGG: dia:Dtpsy_2553 hypothetical protein; hypothetical protein 3409924 10105334 Alide_3263 Alicycliphilus denitrificans BC hypothetical protein YP_004127872.1 3409781 D 596153 CDS YP_004127873.1 319763936 10105335 3410007..3410318 1 NC_014910.1 KEGG: dia:Dtpsy_2554 hypothetical protein; hypothetical protein 3410318 10105335 Alide_3264 Alicycliphilus denitrificans BC hypothetical protein YP_004127873.1 3410007 D 596153 CDS YP_004127874.1 319763937 10105336 3410583..3411485 1 NC_014910.1 KEGG: dac:Daci_5213 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 3411485 10105336 Alide_3265 Alicycliphilus denitrificans BC dihydrodipicolinate synthase YP_004127874.1 3410583 D 596153 CDS YP_004127875.1 319763938 10105337 complement(3411472..3411732) 1 NC_014910.1 KEGG: dia:Dtpsy_2555 molybdopterin converting factor, subunit 1; TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; molybdopterin converting factor subunit 1 3411732 10105337 Alide_3266 Alicycliphilus denitrificans BC molybdopterin converting factor subunit 1 YP_004127875.1 3411472 R 596153 CDS YP_004127876.1 319763939 10105338 complement(3411729..3412976) 1 NC_014910.1 KEGG: ajs:Ajs_3203 molybdenum cofactor synthesis domain-containing protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV; molybdenum cofactor synthesis domain-containing protein 3412976 10105338 Alide_3267 Alicycliphilus denitrificans BC molybdenum cofactor synthesis domain-containing protein YP_004127876.1 3411729 R 596153 CDS YP_004127877.1 319763940 10105339 complement(3412973..3413524) 1 NC_014910.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; KEGG: dia:Dtpsy_2557 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein b 3413524 10105339 Alide_3268 Alicycliphilus denitrificans BC molybdopterin-guanine dinucleotide biosynthesis protein b YP_004127877.1 3412973 R 596153 CDS YP_004127878.1 319763941 10105340 complement(3413598..3415028) 1 NC_014910.1 TIGRFAM: threonine synthase; KEGG: dia:Dtpsy_2558 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase 3415028 10105340 Alide_3269 Alicycliphilus denitrificans BC threonine synthase YP_004127878.1 3413598 R 596153 CDS YP_004127879.1 319763942 10105341 complement(3415039..3415467) 1 NC_014910.1 PFAM: PilT protein domain protein; KEGG: geo:Geob_1146 PilT protein domain protein; twitching motility protein PilT 3415467 10105341 Alide_3270 Alicycliphilus denitrificans BC twitching motility protein PilT YP_004127879.1 3415039 R 596153 CDS YP_004127880.1 319763943 10105342 complement(3415473..3415736) 1 NC_014910.1 TIGRFAM: prevent-host-death family protein; KEGG: bts:Btus_3191 prevent-host-death family protein; prevent-host-death family protein 3415736 10105342 Alide_3271 Alicycliphilus denitrificans BC prevent-host-death family protein YP_004127880.1 3415473 R 596153 CDS YP_004127881.1 319763944 10105343 complement(3415780..3417114) 1 NC_014910.1 KEGG: ajs:Ajs_3206 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; homoserine dehydrogenase 3417114 10105343 Alide_3272 Alicycliphilus denitrificans BC homoserine dehydrogenase YP_004127881.1 3415780 R 596153 CDS YP_004127882.1 319763945 10105344 complement(3417186..3418418) 1 NC_014910.1 PFAM: aminotransferase class I and II; KEGG: dia:Dtpsy_2560 aminotransferase AlaT; aminotransferase class i and ii 3418418 10105344 Alide_3273 Alicycliphilus denitrificans BC aminotransferase class i and ii YP_004127882.1 3417186 R 596153 CDS YP_004127883.1 319763946 10105345 3418537..3418908 1 NC_014910.1 PFAM: protein of unknown function DUF498; KEGG: dia:Dtpsy_2561 protein of unknown function DUF498; hypothetical protein 3418908 10105345 Alide_3274 Alicycliphilus denitrificans BC hypothetical protein YP_004127883.1 3418537 D 596153 CDS YP_004127884.1 319763947 10105347 complement(3419665..3420621) 1 NC_014910.1 KEGG: vap:Vapar_5507 hypothetical protein; hypothetical protein 3420621 10105347 Alide_3275 Alicycliphilus denitrificans BC hypothetical protein YP_004127884.1 3419665 R 596153 CDS YP_004127885.1 319763948 10105348 3420836..3421984 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rme:Rmet_5530 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3421984 10105348 Alide_3276 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127885.1 3420836 D 596153 CDS YP_004127886.1 319763949 10105349 3421993..3423108 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: reh:H16_B0372 pimeloyl-CoA dehydrogenase (small subunit); acyl-CoA dehydrogenase 3423108 10105349 Alide_3277 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127886.1 3421993 D 596153 CDS YP_004127887.1 319763950 10105350 complement(3423416..3424348) 1 NC_014910.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha 3424348 10105350 Alide_3278 Alicycliphilus denitrificans BC electron transfer flavoprotein subunit alpha YP_004127887.1 3423416 R 596153 CDS YP_004127888.1 319763951 10105351 complement(3424363..3425112) 1 NC_014910.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_2299 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunits alpha/beta 3425112 10105351 Alide_3279 Alicycliphilus denitrificans BC electron transfer flavoprotein subunits alpha/beta YP_004127888.1 3424363 R 596153 CDS YP_004127889.1 319763952 10105352 complement(3425159..3426136) 1 NC_014910.1 KEGG: vap:Vapar_1676 hypothetical protein; hypothetical protein 3426136 10105352 Alide_3280 Alicycliphilus denitrificans BC hypothetical protein YP_004127889.1 3425159 R 596153 CDS YP_004127890.1 319763953 10105353 complement(3426153..3427337) 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: vap:Vapar_0843 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 3427337 10105353 Alide_3281 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004127890.1 3426153 R 596153 CDS YP_004127891.1 319763954 10105354 complement(3427352..3427753) 1 NC_014910.1 PFAM: protein of unknown function DUF35; KEGG: bbr:BB4332 hypothetical protein; hypothetical protein 3427753 10105354 Alide_3282 Alicycliphilus denitrificans BC hypothetical protein YP_004127891.1 3427352 R 596153 CDS YP_004127892.1 319763955 10105355 complement(3427755..3428885) 1 NC_014910.1 KEGG: vei:Veis_4266 hypothetical protein; hypothetical protein 3428885 10105355 Alide_3283 Alicycliphilus denitrificans BC hypothetical protein YP_004127892.1 3427755 R 596153 CDS YP_004127893.1 319763956 10105356 complement(3428888..3429664) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_C0267 short chain enoyl-CoA hydratase; enoyl-CoA hydratase 3429664 10105356 Alide_3284 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004127893.1 3428888 R 596153 CDS YP_004127894.1 319763957 10105357 complement(3429681..3430847) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: fal:FRAAL3384 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3430847 10105357 Alide_3285 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127894.1 3429681 R 596153 CDS YP_004127895.1 319763958 10105358 3431018..3433171 1 NC_014910.1 PFAM: CoA-binding domain protein; ATP-grasp domain protein; KEGG: reu:Reut_B4556 CoA-binding; CoA-binding protein 3433171 10105358 Alide_3286 Alicycliphilus denitrificans BC CoA-binding protein YP_004127895.1 3431018 D 596153 CDS YP_004127896.1 319763959 10105359 3433168..3433572 1 NC_014910.1 PFAM: protein of unknown function DUF35; KEGG: rpc:RPC_1073 hypothetical protein; hypothetical protein 3433572 10105359 Alide_3287 Alicycliphilus denitrificans BC hypothetical protein YP_004127896.1 3433168 D 596153 CDS YP_004127897.1 319763960 10105360 3433569..3434726 1 NC_014910.1 KEGG: rpc:RPC_1074 thiolase; thiolase 3434726 10105360 Alide_3288 Alicycliphilus denitrificans BC thiolase YP_004127897.1 3433569 D 596153 CDS YP_004127898.1 319763961 10105361 complement(3434779..3435552) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_0344 enoyl-CoA hydratase; enoyl-CoA hydratase 3435552 10105361 Alide_3289 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004127898.1 3434779 R 596153 CDS YP_004127899.1 319763962 10105362 3435642..3437750 1 NC_014910.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: rme:Rmet_5110 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 3437750 10105362 Alide_3290 Alicycliphilus denitrificans BC 3-hydroxyacyl-CoA dehydrogenase YP_004127899.1 3435642 D 596153 CDS YP_004127900.1 319763963 10105365 complement(3438822..3439679) 1 NC_014910.1 KEGG: gct:GC56T3_1469 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; transcriptional regulator iclr 3439679 10105365 Alide_3293 Alicycliphilus denitrificans BC transcriptional regulator iclr YP_004127900.1 3438822 R 596153 CDS YP_004127901.1 319763964 10105366 complement(3439717..3440862) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase 3440862 10105366 Alide_3294 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127901.1 3439717 R 596153 CDS YP_004127902.1 319763965 10105367 complement(3440871..3442037) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 3442037 10105367 Alide_3295 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004127902.1 3440871 R 596153 CDS YP_004127903.1 319763966 10105368 complement(3442046..3442855) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_0321 1,4-dihydroxy-2-naphthoate synthase; enoyl-CoA hydratase 3442855 10105368 Alide_3296 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004127903.1 3442046 R 596153 CDS YP_004127904.1 319763967 10105369 3442928..3443497 1 NC_014910.1 KEGG: vap:Vapar_5494 gamma-BHC dehydrochlorinase; gamma-bhc dehydrochlorinase 3443497 10105369 Alide_3297 Alicycliphilus denitrificans BC gamma-bhc dehydrochlorinase YP_004127904.1 3442928 D 596153 CDS YP_004127905.1 319763968 10105370 3443599..3444594 1 NC_014910.1 KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein 3444594 10105370 Alide_3298 Alicycliphilus denitrificans BC hypothetical protein YP_004127905.1 3443599 D 596153 CDS YP_004127906.1 319763969 10105371 3444684..3445409 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azl:AZL_d00150 3-hydroxybutyrate dehydrogenase; short-chain dehydrogenase/reductase sdr 3445409 10105371 Alide_3299 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004127906.1 3444684 D 596153 CDS YP_004127907.1 319763970 10105372 3445441..3446685 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pag:PLES_04421 acyl-CoA transferase; l-carnitine dehydratase/bile acid-inducible protein f 3446685 10105372 Alide_3300 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127907.1 3445441 D 596153 CDS YP_004127908.1 319763971 10105373 3446719..3447480 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_4672 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase sdr 3447480 10105373 Alide_3301 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004127908.1 3446719 D 596153 CDS YP_004127909.1 319763972 10105374 complement(3447511..3448263) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ara:Arad_7507 3-oxoacyl-(acyl-carrier-protein) reductase protein; short-chain dehydrogenase/reductase sdr 3448263 10105374 Alide_3302 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004127909.1 3447511 R 596153 CDS YP_004127910.1 319763973 10105375 complement(3448275..3449462) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pde:Pden_3227 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3449462 10105375 Alide_3303 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004127910.1 3448275 R 596153 CDS YP_004127911.1 319763974 10105376 3449693..3450658 1 NC_014910.1 KEGG: reh:H16_B0202 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein 3450658 10105376 Alide_3304 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004127911.1 3449693 D 596153 CDS YP_004127912.1 319763975 10105377 3450731..3451801 1 NC_014910.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gbm:Gbem_2134 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 3451801 10105377 Alide_3305 Alicycliphilus denitrificans BC NADH:flavin oxidoreductase YP_004127912.1 3450731 D 596153 CDS YP_004127913.1 319763976 10105378 3451862..3452557 1 NC_014910.1 PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2354 methyltransferase type 11; type 11 methyltransferase 3452557 10105378 Alide_3306 Alicycliphilus denitrificans BC type 11 methyltransferase YP_004127913.1 3451862 D 596153 CDS YP_004127914.1 319763977 10105379 complement(3452554..3453066) 1 NC_014910.1 KEGG: dia:Dtpsy_1019 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; methylated-DNA--protein-cysteine methyltransferase 3453066 10105379 Alide_3307 Alicycliphilus denitrificans BC methylated-DNA--protein-cysteine methyltransferase YP_004127914.1 3452554 R 596153 CDS YP_004127915.1 319763978 10105380 complement(3453173..3453742) 1 NC_014910.1 TIGRFAM: cob(I)alamin adenosyltransferase; KEGG: ctt:CtCNB1_1848 cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(i)alamin adenosyltransferase 3453742 10105380 Alide_3308 Alicycliphilus denitrificans BC cob(i)alamin adenosyltransferase YP_004127915.1 3453173 R 596153 CDS YP_004127916.1 319763979 10105381 complement(3453766..3454542) 1 NC_014910.1 manually curated; PFAM: ABC transporter related; KEGG: dia:Dtpsy_1017 ABC transporter related; SMART: AAA ATPase; ABC transporter 3454542 10105381 Alide_3309 Alicycliphilus denitrificans BC ABC transporter YP_004127916.1 3453766 R 596153 CDS YP_004127917.1 319763980 10105382 complement(3454539..3455582) 1 NC_014910.1 PFAM: transport system permease protein; KEGG: dia:Dtpsy_1016 transport system permease protein; transport system permease 3455582 10105382 Alide_3310 Alicycliphilus denitrificans BC transport system permease YP_004127917.1 3454539 R 596153 CDS YP_004127918.1 319763981 10105383 complement(3455579..3456478) 1 NC_014910.1 PFAM: periplasmic binding protein; KEGG: dia:Dtpsy_1015 periplasmic binding protein; periplasmic binding protein 3456478 10105383 Alide_3311 Alicycliphilus denitrificans BC periplasmic binding protein YP_004127918.1 3455579 R 596153 CDS YP_004127919.1 319763982 10105384 complement(3456475..3457059) 1 NC_014910.1 KEGG: dia:Dtpsy_1014 cobalbumin biosynthesis protein; PFAM: cobalbumin biosynthesis protein; adenosylcobinamide-phosphate guanylyltransferase 3457059 10105384 Alide_3312 Alicycliphilus denitrificans BC adenosylcobinamide-phosphate guanylyltransferase YP_004127919.1 3456475 R 596153 CDS YP_004127920.1 319763983 10105385 complement(3457121..3458473) 1 NC_014910.1 PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: dia:Dtpsy_1013 CobB/CobQ domain protein glutamine amidotransferase; cobb/cobq domain-containing glutamine amidotransferase 3458473 10105385 Alide_3313 Alicycliphilus denitrificans BC cobb/cobq domain-containing glutamine amidotransferase YP_004127920.1 3457121 R 596153 CDS YP_004127921.1 319763984 10105386 complement(3458475..3460268) 1 NC_014910.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: aav:Aave_1537 TonB-dependent receptor; tonb-dependent receptor plug 3460268 10105386 Alide_3314 Alicycliphilus denitrificans BC tonb-dependent receptor plug YP_004127921.1 3458475 R 596153 CDS YP_004127922.1 319763985 10105387 3460696..3460935 1 NC_014910.1 KEGG: ajs:Ajs_1095 hypothetical protein; hypothetical protein 3460935 10105387 Alide_3315 Alicycliphilus denitrificans BC hypothetical protein YP_004127922.1 3460696 D 596153 CDS YP_004127923.1 319763986 10105388 3460932..3461288 1 NC_014910.1 PFAM: protein of unknown function DUF710; KEGG: dia:Dtpsy_1010 protein of unknown function DUF710; hypothetical protein 3461288 10105388 Alide_3316 Alicycliphilus denitrificans BC hypothetical protein YP_004127923.1 3460932 D 596153 CDS YP_004127924.1 319763987 10105390 complement(3461544..3464024) 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: dac:Daci_2786 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; diguanylate cyclase 3464024 10105390 Alide_3317 Alicycliphilus denitrificans BC diguanylate cyclase YP_004127924.1 3461544 R 596153 CDS YP_004127925.1 319763988 10105391 complement(3464021..3465268) 1 NC_014910.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: aav:Aave_1533 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 3465268 10105391 Alide_3318 Alicycliphilus denitrificans BC metal dependent phosphohydrolase YP_004127925.1 3464021 R 596153 CDS YP_004127926.1 319763989 10105392 complement(3465429..3466151) 1 NC_014910.1 KEGG: ajs:Ajs_1093 hypothetical protein; hypothetical protein 3466151 10105392 Alide_3319 Alicycliphilus denitrificans BC hypothetical protein YP_004127926.1 3465429 R 596153 CDS YP_004127927.1 319763990 10105393 complement(3466155..3467537) 1 NC_014910.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; KEGG: dia:Dtpsy_1008 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen iii oxidase 3467537 10105393 Alide_3320 Alicycliphilus denitrificans BC oxygen-independent coproporphyrinogen iii oxidase YP_004127927.1 3466155 R 596153 CDS YP_004127928.1 319763991 10105394 3467708..3468451 1 NC_014910.1 KEGG: ajs:Ajs_1091 CRP/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; cyclic nucleotide-binding protein 3468451 10105394 Alide_3321 Alicycliphilus denitrificans BC cyclic nucleotide-binding protein YP_004127928.1 3467708 D 596153 CDS YP_004127929.1 319763992 10105395 complement(3468486..3468773) 1 NC_014910.1 KEGG: dia:Dtpsy_1006 hypothetical protein; hypothetical protein 3468773 10105395 Alide_3322 Alicycliphilus denitrificans BC hypothetical protein YP_004127929.1 3468486 R 596153 CDS YP_004127930.1 319763993 10105396 complement(3468861..3469139) 1 NC_014910.1 KEGG: dia:Dtpsy_1005 hypothetical protein; hypothetical protein 3469139 10105396 Alide_3323 Alicycliphilus denitrificans BC hypothetical protein YP_004127930.1 3468861 R 596153 CDS YP_004127931.1 319763994 10105397 complement(3469199..3470641) 1 NC_014910.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG; cytochrome c oxidase accessory protein ccog 3470641 10105397 Alide_3324 Alicycliphilus denitrificans BC cytochrome c oxidase accessory protein ccog YP_004127931.1 3469199 R 596153 CDS YP_004127932.1 319763995 10105398 complement(3470726..3471646) 1 NC_014910.1 KEGG: ajs:Ajs_1087 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; cytochrome c oxidase, cbb3-type, subunit iii 3471646 10105398 Alide_3325 Alicycliphilus denitrificans BC cytochrome c oxidase, cbb3-type, subunit iii YP_004127932.1 3470726 R 596153 CDS YP_004127933.1 319763996 10105399 complement(3471676..3471813) 1 NC_014910.1 KEGG: dia:Dtpsy_1002 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase component 3471813 10105399 Alide_3326 Alicycliphilus denitrificans BC cbb3-type cytochrome oxidase component YP_004127933.1 3471676 R 596153 CDS YP_004127934.1 319763997 10105400 complement(3471834..3472466) 1 NC_014910.1 KEGG: dia:Dtpsy_1001 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase, cbb3-type, subunit ii 3472466 10105400 Alide_3327 Alicycliphilus denitrificans BC cytochrome c oxidase, cbb3-type, subunit ii YP_004127934.1 3471834 R 596153 CDS YP_004127935.1 319763998 10105401 complement(3472486..3473925) 1 NC_014910.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: dia:Dtpsy_1000 cbb3-type cytochrome c oxidase subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase, cbb3-type, subunit i 3473925 10105401 Alide_3328 Alicycliphilus denitrificans BC cytochrome c oxidase, cbb3-type, subunit i YP_004127935.1 3472486 R 596153 CDS YP_004127936.1 319763999 10105402 complement(3473992..3474129) 1 NC_014910.1 KEGG: dia:Dtpsy_0999 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; cbb3-type cytochrome oxidase maturation protein 3474129 10105402 Alide_3329 Alicycliphilus denitrificans BC cbb3-type cytochrome oxidase maturation protein YP_004127936.1 3473992 R 596153 CDS YP_004127937.1 319764000 10105403 complement(3474132..3476468) 1 NC_014910.1 KEGG: dia:Dtpsy_0998 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating p-type atpase 3476468 10105403 Alide_3330 Alicycliphilus denitrificans BC heavy metal translocating p-type atpase YP_004127937.1 3474132 R 596153 CDS YP_004127938.1 319764001 10105404 3476631..3477074 1 NC_014910.1 PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_0997 UspA domain protein; uspa domain-containing protein 3477074 10105404 Alide_3331 Alicycliphilus denitrificans BC uspa domain-containing protein YP_004127938.1 3476631 D 596153 CDS YP_004127939.1 319764002 10105405 complement(3477184..3478737) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_0996 malonyl-CoA synthase; AMP-dependent synthetase/ligase 3478737 10105405 Alide_3332 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004127939.1 3477184 R 596153 CDS YP_004127940.1 319764003 10105406 complement(3478748..3479569) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_1079 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 3479569 10105406 Alide_3333 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004127940.1 3478748 R 596153 CDS YP_004127941.1 319764004 10105407 complement(3479579..3480601) 1 NC_014910.1 KEGG: dia:Dtpsy_0994 hypothetical protein; hypothetical protein 3480601 10105407 Alide_3334 Alicycliphilus denitrificans BC hypothetical protein YP_004127941.1 3479579 R 596153 CDS YP_004127942.1 319764005 10105408 complement(3480665..3482092) 1 NC_014910.1 KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase; malonyl-CoA decarboxylase 3482092 10105408 Alide_3335 Alicycliphilus denitrificans BC malonyl-CoA decarboxylase YP_004127942.1 3480665 R 596153 CDS YP_004127943.1 319764006 10105409 complement(3482089..3482757) 1 NC_014910.1 KEGG: dia:Dtpsy_0992 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3482757 10105409 Alide_3336 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004127943.1 3482089 R 596153 CDS YP_004127944.1 319764007 10105410 complement(3482966..3483781) 1 NC_014910.1 KEGG: dia:Dtpsy_0991 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 3483781 10105410 Alide_3337 Alicycliphilus denitrificans BC prolipoprotein diacylglyceryl transferase YP_004127944.1 3482966 R 596153 CDS YP_004127945.1 319764008 10105411 3483881..3484348 1 NC_014910.1 KEGG: dia:Dtpsy_0990 bacterioferritin; TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; bacterioferritin 3484348 10105411 Alide_3338 Alicycliphilus denitrificans BC bacterioferritin YP_004127945.1 3483881 D 596153 CDS YP_004127946.1 319764009 10105412 complement(3484351..3484779) 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_0989 thioesterase superfamily protein; thioesterase superfamily protein 3484779 10105412 Alide_3339 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004127946.1 3484351 R 596153 CDS YP_004127947.1 319764010 10105413 complement(3484920..3486776) 1 NC_014910.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0988 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 3486776 10105413 Alide_3340 Alicycliphilus denitrificans BC dihydroxy-acid dehydratase YP_004127947.1 3484920 R 596153 CDS YP_004127948.1 319764011 10105414 3487005..3488696 1 NC_014910.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0987 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 3488696 10105414 Alide_3341 Alicycliphilus denitrificans BC dihydroxy-acid dehydratase YP_004127948.1 3487005 D 596153 CDS YP_004127949.1 319764012 10105415 complement(3488721..3488963) 1 NC_014910.1 KEGG: dia:Dtpsy_0986 hypothetical protein; hypothetical protein 3488963 10105415 Alide_3342 Alicycliphilus denitrificans BC hypothetical protein YP_004127949.1 3488721 R 596153 CDS YP_004127950.1 319764013 10105416 3489071..3489373 1 NC_014910.1 PFAM: cytochrome c class I; KEGG: dia:Dtpsy_0985 cytochrome c class I; cytochrome c class i 3489373 10105416 Alide_3343 Alicycliphilus denitrificans BC cytochrome c class i YP_004127950.1 3489071 D 596153 CDS YP_004127951.1 319764014 10105417 complement(3489502..3490188) 1 NC_014910.1 TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; KEGG: dia:Dtpsy_2754 lipoprotein releasing system, ATP-binding protein; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 3490188 10105417 Alide_3344 Alicycliphilus denitrificans BC lipoprotein releasing system, ATP-binding protein YP_004127951.1 3489502 R 596153 CDS YP_004127952.1 319764015 10105418 complement(3490181..3491434) 1 NC_014910.1 KEGG: dia:Dtpsy_2755 lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; lipoprotein releasing system transmembrane protein 3491434 10105418 Alide_3345 Alicycliphilus denitrificans BC lipoprotein releasing system transmembrane protein YP_004127952.1 3490181 R 596153 CDS YP_004127953.1 319764016 10105419 3491529..3492479 1 NC_014910.1 PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: dia:Dtpsy_2757 hypothetical protein; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 3492479 10105419 Alide_3346 Alicycliphilus denitrificans BC 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_004127953.1 3491529 D 596153 CDS YP_004127954.1 319764017 10105420 3492476..3494191 1 NC_014910.1 KEGG: ajs:Ajs_3424 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; single-stranded-DNA-specific exonuclease recj 3494191 10105420 Alide_3347 Alicycliphilus denitrificans BC single-stranded-DNA-specific exonuclease recj YP_004127954.1 3492476 D 596153 CDS YP_004127955.1 319764018 10105421 complement(3494252..3496027) 1 NC_014910.1 KEGG: dia:Dtpsy_2762 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 3496027 10105421 Alide_3348 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004127955.1 3494252 R 596153 CDS YP_004127956.1 319764019 10105422 3496198..3497079 1 NC_014910.1 manually curated; PFAM: PHP domain protein; KEGG: dia:Dtpsy_2763 PHP domain protein; SMART: phosphoesterase PHP domain protein; php domain-containing protein 3497079 10105422 Alide_3349 Alicycliphilus denitrificans BC php domain-containing protein YP_004127956.1 3496198 D 596153 CDS YP_004127957.1 319764020 10105423 3497085..3497720 1 NC_014910.1 KEGG: dia:Dtpsy_2764 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; sua5/ycio/yrdc/ywlc family protein 3497720 10105423 Alide_3350 Alicycliphilus denitrificans BC sua5/ycio/yrdc/ywlc family protein YP_004127957.1 3497085 D 596153 CDS YP_004127958.1 319764021 10105424 complement(3497805..3498980) 1 NC_014910.1 KEGG: dac:Daci_5413 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; chemotaxis sensory transducer protein 3498980 10105424 Alide_3351 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004127958.1 3497805 R 596153 CDS YP_004127959.1 319764022 10105425 3499322..3500029 1 NC_014910.1 PFAM: peptidase M50; KEGG: dia:Dtpsy_2770 peptidase M50; peptidase m50 3500029 10105425 Alide_3352 Alicycliphilus denitrificans BC peptidase m50 YP_004127959.1 3499322 D 596153 CDS YP_004127960.1 319764023 10105426 3500041..3501342 1 NC_014910.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: dia:Dtpsy_2771 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 3501342 10105426 Alide_3353 Alicycliphilus denitrificans BC tryptophanyl-tRNA synthetase YP_004127960.1 3500041 D 596153 CDS YP_004127961.1 319764024 10105427 3501545..3502276 1 NC_014910.1 KEGG: ctt:CtCNB1_0831 two component transcriptional regulator, winged; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 3502276 10105427 Alide_3354 Alicycliphilus denitrificans BC response regulator receiver YP_004127961.1 3501545 D 596153 CDS YP_004127962.1 319764025 10105428 3502400..3504052 1 NC_014910.1 KEGG: dac:Daci_5417 peptidoglycan-binding LysM; PFAM: FecR protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; fecr protein 3504052 10105428 Alide_3355 Alicycliphilus denitrificans BC fecr protein YP_004127962.1 3502400 D 596153 CDS YP_004127963.1 319764026 10105429 3504093..3506399 1 NC_014910.1 KEGG: dac:Daci_5418 histidine kinase; PFAM: CHASE2 domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; chase2 domain-containing protein 3506399 10105429 Alide_3356 Alicycliphilus denitrificans BC chase2 domain-containing protein YP_004127963.1 3504093 D 596153 CDS YP_004127964.1 319764027 10105430 complement(3506436..3507830) 1 NC_014910.1 TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: rfr:Rfer_0702 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase; sugar transferase, pep-cterm system associated 3507830 10105430 Alide_3357 Alicycliphilus denitrificans BC sugar transferase, pep-cterm system associated YP_004127964.1 3506436 R 596153 CDS YP_004127965.1 319764028 10105431 complement(3508013..3509950) 1 NC_014910.1 KEGG: rfr:Rfer_0701 hypothetical protein; hypothetical protein 3509950 10105431 Alide_3358 Alicycliphilus denitrificans BC hypothetical protein YP_004127965.1 3508013 R 596153 CDS YP_004127966.1 319764029 10105433 complement(3510218..3511159) 1 NC_014910.1 KEGG: dac:Daci_5376 hypothetical protein; hypothetical protein 3511159 10105433 Alide_3359 Alicycliphilus denitrificans BC hypothetical protein YP_004127966.1 3510218 R 596153 CDS YP_004127967.1 319764030 10105434 complement(3511216..3512532) 1 NC_014910.1 TIGRFAM: seryl-tRNA synthetase; KEGG: dia:Dtpsy_2772 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase 3512532 10105434 Alide_3360 Alicycliphilus denitrificans BC seryl-tRNA synthetase YP_004127967.1 3511216 R 596153 CDS YP_004127968.1 319764031 10105435 3512585..3513262 1 NC_014910.1 KEGG: aav:Aave_3769 CBS domain-containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; CBS domain-containing protein 3513262 10105435 Alide_3361 Alicycliphilus denitrificans BC CBS domain-containing protein YP_004127968.1 3512585 D 596153 CDS YP_004127969.1 319764032 10105436 complement(3513284..3514612) 1 NC_014910.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: ajs:Ajs_3447 hypothetical protein; hypothetical protein 3514612 10105436 Alide_3362 Alicycliphilus denitrificans BC hypothetical protein YP_004127969.1 3513284 R 596153 CDS YP_004127970.1 319764033 10105437 complement(3514820..3515776) 1 NC_014910.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: ajs:Ajs_3448 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 3515776 10105437 Alide_3363 Alicycliphilus denitrificans BC hydroxymethylbutenyl pyrophosphate reductase YP_004127970.1 3514820 R 596153 CDS YP_004127971.1 319764034 10105438 complement(3515781..3516257) 1 NC_014910.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dia:Dtpsy_2776 peptidylprolyl isomerase FKBP-type; peptidylprolyl isomerase fkbp-type 3516257 10105438 Alide_3364 Alicycliphilus denitrificans BC peptidylprolyl isomerase fkbp-type YP_004127971.1 3515781 R 596153 CDS YP_004127972.1 319764035 10105439 3516339..3517052 1 NC_014910.1 KEGG: ajs:Ajs_3450 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein radc 3517052 10105439 Alide_3365 Alicycliphilus denitrificans BC DNA repair protein radc YP_004127972.1 3516339 D 596153 CDS YP_004127973.1 319764036 10105440 3517049..3518209 1 NC_014910.1 KEGG: dia:Dtpsy_2778 hypothetical protein; hypothetical protein 3518209 10105440 Alide_3366 Alicycliphilus denitrificans BC hypothetical protein YP_004127973.1 3517049 D 596153 CDS YP_004127974.1 319764037 10105441 3518206..3518856 1 NC_014910.1 KEGG: dia:Dtpsy_2779 Smr protein/MutS2; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; smr protein/muts2 3518856 10105441 Alide_3367 Alicycliphilus denitrificans BC smr protein/muts2 YP_004127974.1 3518206 D 596153 CDS YP_004127975.1 319764038 10105442 3518954..3519922 1 NC_014910.1 KEGG: reu:Reut_B4844 hypothetical protein; hypothetical protein 3519922 10105442 Alide_3368 Alicycliphilus denitrificans BC hypothetical protein YP_004127975.1 3518954 D 596153 CDS YP_004127976.1 319764039 10105443 3519919..3521199 1 NC_014910.1 KEGG: reu:Reut_B4843 3-isopropylmalate dehydratase large subunit; TIGRFAM: homoaconitate hydratase family protein; PFAM: aconitate hydratase domain-containing protein; homoaconitate hydratase family protein 3521199 10105443 Alide_3369 Alicycliphilus denitrificans BC homoaconitate hydratase family protein YP_004127976.1 3519919 D 596153 CDS YP_004127977.1 319764040 10105444 3521196..3521765 1 NC_014910.1 KEGG: reu:Reut_B4842 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase small subunit 3521765 10105444 Alide_3370 Alicycliphilus denitrificans BC 3-isopropylmalate dehydratase small subunit YP_004127977.1 3521196 D 596153 CDS YP_004127978.1 319764041 10105445 3521762..3522616 1 NC_014910.1 PFAM: isocitrate lyase and phosphorylmutase; KEGG: reu:Reut_B4841 2,3-dimethylmalate lyase; isocitrate lyase and phosphorylmutase 3522616 10105445 Alide_3371 Alicycliphilus denitrificans BC isocitrate lyase and phosphorylmutase YP_004127978.1 3521762 D 596153 CDS YP_004127979.1 319764042 10105446 3522710..3523468 1 NC_014910.1 KEGG: reu:Reut_B4840 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; ubic transcription regulator-associated domain-containing protein 3523468 10105446 Alide_3372 Alicycliphilus denitrificans BC ubic transcription regulator-associated domain-containing protein YP_004127979.1 3522710 D 596153 CDS YP_004127980.1 319764043 10105447 complement(3523518..3523955) 1 NC_014910.1 PFAM: globin; KEGG: ajs:Ajs_3454 globin; globin 3523955 10105447 Alide_3373 Alicycliphilus denitrificans BC globin YP_004127980.1 3523518 R 596153 CDS YP_004127981.1 319764044 10105448 complement(3523955..3524347) 1 NC_014910.1 KEGG: dia:Dtpsy_2782 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 3524347 10105448 Alide_3374 Alicycliphilus denitrificans BC TraR/DksA family transcriptional regulator YP_004127981.1 3523955 R 596153 CDS YP_004127982.1 319764045 10105449 complement(3524391..3525947) 1 NC_014910.1 KEGG: ajs:Ajs_3456 hypothetical protein; hypothetical protein 3525947 10105449 Alide_3375 Alicycliphilus denitrificans BC hypothetical protein YP_004127982.1 3524391 R 596153 CDS YP_004127983.1 319764046 10105450 complement(3526001..3526228) 1 NC_014910.1 KEGG: dia:Dtpsy_2784 hypothetical protein; hypothetical protein 3526228 10105450 Alide_3376 Alicycliphilus denitrificans BC hypothetical protein YP_004127983.1 3526001 R 596153 CDS YP_004127984.1 319764047 10105451 complement(3526231..3528762) 1 NC_014910.1 PFAM: protein of unknown function DUF214; KEGG: dia:Dtpsy_2785 protein of unknown function DUF214; hypothetical protein 3528762 10105451 Alide_3377 Alicycliphilus denitrificans BC hypothetical protein YP_004127984.1 3526231 R 596153 CDS YP_004127985.1 319764048 10105452 complement(3528772..3529638) 1 NC_014910.1 PFAM: formate dehydrogenase subunit FdhD; KEGG: dia:Dtpsy_2786 formate dehydrogenase subunit FdhD; formate dehydrogenase subunit fdhd 3529638 10105452 Alide_3378 Alicycliphilus denitrificans BC formate dehydrogenase subunit fdhd YP_004127985.1 3528772 R 596153 CDS YP_004127986.1 319764049 10105453 complement(3529718..3530038) 1 NC_014910.1 KEGG: dia:Dtpsy_2787 hypothetical protein; hypothetical protein 3530038 10105453 Alide_3379 Alicycliphilus denitrificans BC hypothetical protein YP_004127986.1 3529718 R 596153 CDS YP_004127987.1 319764050 10105454 complement(3530035..3531231) 1 NC_014910.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: ajs:Ajs_3461 formate dehydrogenase gamma subunit; formate dehydrogenase subunit gamma 3531231 10105454 Alide_3380 Alicycliphilus denitrificans BC formate dehydrogenase subunit gamma YP_004127987.1 3530035 R 596153 CDS YP_004127988.1 319764051 10105455 complement(3531245..3531478) 1 NC_014910.1 KEGG: dia:Dtpsy_2789 lipoprotein; lipoprotein 3531478 10105455 Alide_3381 Alicycliphilus denitrificans BC lipoprotein YP_004127988.1 3531245 R 596153 CDS YP_004127989.1 319764052 10105456 complement(3531475..3532095) 1 NC_014910.1 KEGG: dia:Dtpsy_2790 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3532095 10105456 Alide_3382 Alicycliphilus denitrificans BC 4Fe-4S ferredoxin YP_004127989.1 3531475 R 596153 CDS YP_004127990.1 319764053 10105457 complement(3532123..3535095) 1 NC_014910.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: dia:Dtpsy_2791 molybdopterin oxidoreductase; molybdopterin oxidoreductase 3535095 10105457 Alide_3383 Alicycliphilus denitrificans BC molybdopterin oxidoreductase YP_004127990.1 3532123 R 596153 CDS YP_004127991.1 319764054 10105458 complement(3535117..3535329) 1 NC_014910.1 TIGRFAM: formate dehydrogenase region TAT target; KEGG: dia:Dtpsy_2792 formate dehydrogenase region TAT target; formate dehydrogenase region tat target 3535329 10105458 Alide_3384 Alicycliphilus denitrificans BC formate dehydrogenase region tat target YP_004127991.1 3535117 R 596153 CDS YP_004127992.1 319764055 10105459 complement(3535465..3536100) 1 NC_014910.1 KEGG: dia:Dtpsy_2793 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone tord family protein 3536100 10105459 Alide_3385 Alicycliphilus denitrificans BC cytoplasmic chaperone tord family protein YP_004127992.1 3535465 R 596153 CDS YP_004127993.1 319764056 10105460 complement(3536097..3538196) 1 NC_014910.1 manually curated; KEGG: ajs:Ajs_3467 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 3538196 10105460 Alide_3386 Alicycliphilus denitrificans BC 4Fe-4S ferredoxin YP_004127993.1 3536097 R 596153 CDS YP_004127994.1 319764057 10105461 complement(3538120..3538728) 1 NC_014910.1 KEGG: ajs:Ajs_3468 hypothetical protein; hypothetical protein 3538728 10105461 Alide_3387 Alicycliphilus denitrificans BC hypothetical protein YP_004127994.1 3538120 R 596153 CDS YP_004127995.1 319764058 10105462 complement(3538721..3539284) 1 NC_014910.1 KEGG: dia:Dtpsy_2796 hypothetical protein; hypothetical protein 3539284 10105462 Alide_3388 Alicycliphilus denitrificans BC hypothetical protein YP_004127995.1 3538721 R 596153 CDS YP_004127996.1 319764059 10105463 complement(3539295..3542156) 1 NC_014910.1 KEGG: dia:Dtpsy_2797 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; ferredoxin; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 3542156 10105463 Alide_3389 Alicycliphilus denitrificans BC formate dehydrogenase subunit alpha YP_004127996.1 3539295 R 596153 CDS YP_004127997.1 319764060 10105464 complement(3542153..3544054) 1 NC_014910.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: dia:Dtpsy_2798 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; respiratory-chain NADH dehydrogenase 51 kda subunit 3544054 10105464 Alide_3390 Alicycliphilus denitrificans BC respiratory-chain NADH dehydrogenase 51 kda subunit YP_004127997.1 3542153 R 596153 CDS YP_004127998.1 319764061 10105465 complement(3544168..3544974) 1 NC_014910.1 PFAM: HpcH/HpaI aldolase; KEGG: bpy:Bphyt_0618 citrate (pro-3S)-lyase; hpch/hpai aldolase 3544974 10105465 Alide_3391 Alicycliphilus denitrificans BC hpch/hpai aldolase YP_004127998.1 3544168 R 596153 CDS YP_004127999.1 319764062 10105466 complement(3545005..3546207) 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_4176 major facilitator transporter; major facilitator superfamily protein 3546207 10105466 Alide_3392 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004127999.1 3545005 R 596153 CDS YP_004128000.1 319764063 10105467 complement(3546204..3547019) 1 NC_014910.1 KEGG: bpt:Bpet0853 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain-containing protein; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3547019 10105467 Alide_3393 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004128000.1 3546204 R 596153 CDS YP_004128001.1 319764064 10105468 complement(3547016..3548245) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet0852 hypothetical protein; l-carnitine dehydratase/bile acid-inducible protein f 3548245 10105468 Alide_3394 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004128001.1 3547016 R 596153 CDS YP_004128002.1 319764065 10105469 complement(3548242..3549414) 1 NC_014910.1 KEGG: bpt:Bpet0851 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein; isovaleryl-CoA dehydrogenase 3549414 10105469 Alide_3395 Alicycliphilus denitrificans BC isovaleryl-CoA dehydrogenase YP_004128002.1 3548242 R 596153 CDS YP_004128003.1 319764066 10105470 complement(3549411..3550862) 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: bpt:Bpet0850 hypothetical protein; mmge/prpd family protein 3550862 10105470 Alide_3396 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004128003.1 3549411 R 596153 CDS YP_004128004.1 319764067 10105471 complement(3550870..3551850) 1 NC_014910.1 KEGG: vap:Vapar_0801 hypothetical protein; hypothetical protein 3551850 10105471 Alide_3397 Alicycliphilus denitrificans BC hypothetical protein YP_004128004.1 3550870 R 596153 CDS YP_004128005.1 319764068 10105472 complement(3551900..3552403) 1 NC_014910.1 PFAM: MaoC domain protein dehydratase; KEGG: bpt:Bpet0844 hypothetical protein; MaoC domain-containing protein 3552403 10105472 Alide_3398 Alicycliphilus denitrificans BC MaoC domain-containing protein YP_004128005.1 3551900 R 596153 CDS YP_004128006.1 319764069 10105473 complement(3552589..3553680) 1 NC_014910.1 PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; KEGG: ajs:Ajs_3476 hypothetical protein; chromosome partitioning protein ParA 3553680 10105473 Alide_3399 Alicycliphilus denitrificans BC chromosome partitioning protein ParA YP_004128006.1 3552589 R 596153 CDS YP_004128007.1 319764070 10105474 complement(3553747..3554820) 1 NC_014910.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: dia:Dtpsy_2801 C4-dicarboxylate transporter/malic acid transport protein; c4-dicarboxylate transporter/malic acid transport protein 3554820 10105474 Alide_3400 Alicycliphilus denitrificans BC c4-dicarboxylate transporter/malic acid transport protein YP_004128007.1 3553747 R 596153 CDS YP_004128008.1 319764071 10105475 complement(3554817..3555878) 1 NC_014910.1 KEGG: ajs:Ajs_3479 selenophosphate synthase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; selenide, water dikinase 3555878 10105475 Alide_3401 Alicycliphilus denitrificans BC selenide, water dikinase YP_004128008.1 3554817 R 596153 CDS YP_004128009.1 319764072 10105476 3555937..3556986 1 NC_014910.1 KEGG: dia:Dtpsy_2803 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; tRNA 2-selenouridine synthase 3556986 10105476 Alide_3402 Alicycliphilus denitrificans BC tRNA 2-selenouridine synthase YP_004128009.1 3555937 D 596153 CDS YP_004128010.1 319764073 10105477 3557173..3557748 1 NC_014910.1 PFAM: restriction endonuclease; KEGG: dia:Dtpsy_2804 restriction endonuclease; restriction endonuclease 3557748 10105477 Alide_3403 Alicycliphilus denitrificans BC restriction endonuclease YP_004128010.1 3557173 D 596153 CDS YP_004128011.1 319764074 10105478 3557773..3559014 1 NC_014910.1 PFAM: Patatin; KEGG: dia:Dtpsy_2805 patatin; patatin 3559014 10105478 Alide_3404 Alicycliphilus denitrificans BC patatin YP_004128011.1 3557773 D 596153 CDS YP_004128012.1 319764075 10105479 3559094..3561163 1 NC_014910.1 KEGG: dia:Dtpsy_2806 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein; methionyl-tRNA synthetase 3561163 10105479 Alide_3405 Alicycliphilus denitrificans BC methionyl-tRNA synthetase YP_004128012.1 3559094 D 596153 CDS YP_004128013.1 319764076 10105480 3561180..3561407 1 NC_014910.1 KEGG: dac:Daci_1842 hypothetical protein; hypothetical protein 3561407 10105480 Alide_3406 Alicycliphilus denitrificans BC hypothetical protein YP_004128013.1 3561180 D 596153 CDS YP_004128014.1 319764077 10105481 complement(3561581..3563053) 1 NC_014910.1 KEGG: tmz:Tmz1t_0986 transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3563053 10105481 Alide_3407 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004128014.1 3561581 R 596153 CDS YP_004128015.1 319764078 10105482 3563143..3564360 1 NC_014910.1 KEGG: dac:Daci_3710 benzoate transporter; TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; benzoate transporter 3564360 10105482 Alide_3408 Alicycliphilus denitrificans BC benzoate transporter YP_004128015.1 3563143 D 596153 CDS YP_004128016.1 319764079 10105483 3564357..3565151 1 NC_014910.1 PFAM: alanine racemase domain protein; KEGG: dac:Daci_3709 alanine racemase domain-containing protein; alanine racemase 3565151 10105483 Alide_3409 Alicycliphilus denitrificans BC alanine racemase YP_004128016.1 3564357 D 596153 CDS YP_004128017.1 319764080 10105484 3565148..3565864 1 NC_014910.1 PFAM: glutamine amidotransferase class-I; KEGG: tmz:Tmz1t_0983 glutamine amidotransferase; glutamine amidotransferase class-i 3565864 10105484 Alide_3410 Alicycliphilus denitrificans BC glutamine amidotransferase class-i YP_004128017.1 3565148 D 596153 CDS YP_004128018.1 319764081 10105485 complement(3565950..3566957) 1 NC_014910.1 KEGG: ajs:Ajs_3485 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; helix-turn-helix Fis-type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 3566957 10105485 Alide_3411 Alicycliphilus denitrificans BC AraC family transcriptional regulator YP_004128018.1 3565950 R 596153 CDS YP_004128019.1 319764082 10105486 3567052..3568662 1 NC_014910.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dia:Dtpsy_2809 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3568662 10105486 Alide_3412 Alicycliphilus denitrificans BC fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004128019.1 3567052 D 596153 CDS YP_004128020.1 319764083 10105487 3568659..3569810 1 NC_014910.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ajs:Ajs_3487 FMN-dependent alpha-hydroxy acid dehydrogenase; fmn-dependent alpha-hydroxy acid dehydrogenase 3569810 10105487 Alide_3413 Alicycliphilus denitrificans BC fmn-dependent alpha-hydroxy acid dehydrogenase YP_004128020.1 3568659 D 596153 CDS YP_004128021.1 319764084 10105488 3569879..3571531 1 NC_014910.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: ajs:Ajs_3488 hypothetical protein; thiamine pyrophosphate tpp-binding domain-containing protein 3571531 10105488 Alide_3414 Alicycliphilus denitrificans BC thiamine pyrophosphate tpp-binding domain-containing protein YP_004128021.1 3569879 D 596153 CDS YP_004128022.1 319764085 10105489 complement(3571538..3572038) 1 NC_014910.1 KEGG: dac:Daci_1840 lipoprotein; lipoprotein 3572038 10105489 Alide_3415 Alicycliphilus denitrificans BC lipoprotein YP_004128022.1 3571538 R 596153 CDS YP_004128023.1 319764086 10105490 3572084..3572299 1 NC_014910.1 KEGG: ajs:Ajs_3491 hypothetical protein; hypothetical protein 3572299 10105490 Alide_3416 Alicycliphilus denitrificans BC hypothetical protein YP_004128023.1 3572084 D 596153 CDS YP_004128024.1 319764087 10105491 3572365..3573201 1 NC_014910.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: ajs:Ajs_3492 condensin subunit ScpA; chromosome segregation and condensation protein scpa 3573201 10105491 Alide_3417 Alicycliphilus denitrificans BC chromosome segregation and condensation protein scpa YP_004128024.1 3572365 D 596153 CDS YP_004128025.1 319764088 10105492 complement(3573186..3573740) 1 NC_014910.1 KEGG: sml:Smlt2675 carboxymuconolactone decarboxylase family protein; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 3573740 10105492 Alide_3418 Alicycliphilus denitrificans BC peroxidase-like protein YP_004128025.1 3573186 R 596153 CDS YP_004128026.1 319764089 10105493 3573836..3574705 1 NC_014910.1 KEGG: reh:H16_A1911 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 3574705 10105493 Alide_3419 Alicycliphilus denitrificans BC AraC family transcriptional regulator YP_004128026.1 3573836 D 596153 CDS YP_004128027.1 319764090 10105494 3574797..3576371 1 NC_014910.1 KEGG: vei:Veis_1080 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; l-aspartate oxidase 3576371 10105494 Alide_3420 Alicycliphilus denitrificans BC l-aspartate oxidase YP_004128027.1 3574797 D 596153 CDS YP_004128028.1 319764091 10105495 3576419..3576781 1 NC_014910.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: dia:Dtpsy_2818 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 3576781 10105495 Alide_3421 Alicycliphilus denitrificans BC 5-carboxymethyl-2-hydroxymuconate isomerase YP_004128028.1 3576419 D 596153 CDS YP_004128029.1 319764092 10105496 complement(3576919..3578661) 1 NC_014910.1 KEGG: ajs:Ajs_3496 para-aminobenzoate synthase, subunit I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; aminotransferase class IV; para-aminobenzoate synthase, subunit i 3578661 10105496 Alide_3422 Alicycliphilus denitrificans BC para-aminobenzoate synthase, subunit i YP_004128029.1 3576919 R 596153 CDS YP_004128030.1 319764093 10105497 complement(3578715..3579839) 1 NC_014910.1 TIGRFAM: quinolinate synthetase complex, A subunit; KEGG: dia:Dtpsy_2820 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthetase complex, a subunit 3579839 10105497 Alide_3423 Alicycliphilus denitrificans BC quinolinate synthetase complex, a subunit YP_004128030.1 3578715 R 596153 CDS YP_004128031.1 319764094 10105498 complement(3580061..3580942) 1 NC_014910.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: dia:Dtpsy_2821 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 3580942 10105498 Alide_3424 Alicycliphilus denitrificans BC nicotinate-nucleotide pyrophosphorylase YP_004128031.1 3580061 R 596153 CDS YP_004128032.1 319764095 10105500 3581261..3582145 1 NC_014910.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: dia:Dtpsy_2822 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3582145 10105500 Alide_3426 Alicycliphilus denitrificans BC 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004128032.1 3581261 D 596153 CDS YP_004128033.1 319764096 10105501 3582157..3583008 1 NC_014910.1 KEGG: ajs:Ajs_3500 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 3583008 10105501 Alide_3427 Alicycliphilus denitrificans BC pantoate--beta-alanine ligase YP_004128033.1 3582157 D 596153 CDS YP_004128034.1 319764097 10105502 complement(3583128..3584018) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbr:BB0990 LysR family transcriptional regulator; LysR family transcriptional regulator 3584018 10105502 Alide_3428 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128034.1 3583128 R 596153 CDS YP_004128035.1 319764098 10105503 3584135..3585127 1 NC_014910.1 KEGG: bpa:BPP0896 hypothetical protein; hypothetical protein 3585127 10105503 Alide_3429 Alicycliphilus denitrificans BC hypothetical protein YP_004128035.1 3584135 D 596153 CDS YP_004128036.1 319764099 10105504 3585136..3586662 1 NC_014910.1 PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: bbr:BB0988 hypothetical protein; microcystin lr degradation protein mlrc-like protein 3586662 10105504 Alide_3430 Alicycliphilus denitrificans BC microcystin lr degradation protein mlrc-like protein YP_004128036.1 3585136 D 596153 CDS YP_004128037.1 319764100 10105505 3586677..3587414 1 NC_014910.1 PFAM: protein of unknown function DUF81; KEGG: bpa:BPP0894 hypothetical protein; hypothetical protein 3587414 10105505 Alide_3431 Alicycliphilus denitrificans BC hypothetical protein YP_004128037.1 3586677 D 596153 CDS YP_004128038.1 319764101 10105506 3587446..3588429 1 NC_014910.1 KEGG: bpa:BPP0893 hypothetical protein; hypothetical protein 3588429 10105506 Alide_3432 Alicycliphilus denitrificans BC hypothetical protein YP_004128038.1 3587446 D 596153 CDS YP_004128039.1 319764102 10105507 complement(3588457..3589179) 1 NC_014910.1 KEGG: pna:Pnap_3576 hypothetical protein; hypothetical protein 3589179 10105507 Alide_3433 Alicycliphilus denitrificans BC hypothetical protein YP_004128039.1 3588457 R 596153 CDS YP_004128040.1 319764103 10105508 complement(3589297..3590289) 1 NC_014910.1 KEGG: ajs:Ajs_3501 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; manually curated; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; nad-dependent glycerol-3-phosphate dehydrogenase domain-containing protein 3590289 10105508 Alide_3434 Alicycliphilus denitrificans BC nad-dependent glycerol-3-phosphate dehydrogenase domain-containing protein YP_004128040.1 3589297 R 596153 CDS YP_004128041.1 319764104 10105509 complement(3590355..3590810) 1 NC_014910.1 KEGG: dia:Dtpsy_2825 preprotein translocase subunit SecB; TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; protein-export protein secb 3590810 10105509 Alide_3435 Alicycliphilus denitrificans BC protein-export protein secb YP_004128041.1 3590355 R 596153 CDS YP_004128042.1 319764105 10105510 complement(3590918..3591175) 1 NC_014910.1 KEGG: dia:Dtpsy_2826 glutaredoxin 3; TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 3 3591175 10105510 Alide_3436 Alicycliphilus denitrificans BC glutaredoxin 3 YP_004128042.1 3590918 R 596153 CDS YP_004128043.1 319764106 10105511 complement(3591224..3591631) 1 NC_014910.1 KEGG: dia:Dtpsy_2827 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; rhodanese domain-containing protein 3591631 10105511 Alide_3437 Alicycliphilus denitrificans BC rhodanese domain-containing protein YP_004128043.1 3591224 R 596153 CDS YP_004128044.1 319764107 10105512 3591705..3592448 1 NC_014910.1 TIGRFAM: phosphoglycerate mutase 1 family; KEGG: ajs:Ajs_3505 phosphoglyceromutase; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 3592448 10105512 Alide_3438 Alicycliphilus denitrificans BC phosphoglycerate mutase YP_004128044.1 3591705 D 596153 CDS YP_004128045.1 319764108 10105513 3592535..3593971 1 NC_014910.1 TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_3506 C-terminal processing peptidase-3; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 3593971 10105513 Alide_3439 Alicycliphilus denitrificans BC carboxyl-terminal protease YP_004128045.1 3592535 D 596153 CDS YP_004128046.1 319764109 10105514 3594039..3594803 1 NC_014910.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: ajs:Ajs_3507 UBA/ThiF-type NAD/FAD binding protein; uba/thif-type nad/fad binding protein 3594803 10105514 Alide_3440 Alicycliphilus denitrificans BC uba/thif-type nad/fad binding protein YP_004128046.1 3594039 D 596153 CDS YP_004128047.1 319764110 10105515 3594909..3595328 1 NC_014910.1 KEGG: dia:Dtpsy_2831 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 3595328 10105515 Alide_3441 Alicycliphilus denitrificans BC response regulator receiver YP_004128047.1 3594909 D 596153 CDS YP_004128048.1 319764111 10105516 complement(3595306..3595938) 1 NC_014910.1 KEGG: dia:Dtpsy_2832 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver 3595938 10105516 Alide_3442 Alicycliphilus denitrificans BC response regulator receiver YP_004128048.1 3595306 R 596153 CDS YP_004128049.1 319764112 10105517 3596048..3597391 1 NC_014910.1 KEGG: ajs:Ajs_3510 multi-sensor signal transduction histidine kinase; PFAM: CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; chase3 domain-containing protein 3597391 10105517 Alide_3443 Alicycliphilus denitrificans BC chase3 domain-containing protein YP_004128049.1 3596048 D 596153 CDS YP_004128050.1 319764113 10105518 3597534..3597698 1 NC_014910.1 PFAM: protein of unknown function DUF1328; KEGG: dia:Dtpsy_2834 hypothetical protein; hypothetical protein 3597698 10105518 Alide_3444 Alicycliphilus denitrificans BC hypothetical protein YP_004128050.1 3597534 D 596153 CDS YP_004128051.1 319764114 10105519 3597764..3598156 1 NC_014910.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: dia:Dtpsy_2835 hypothetical protein; hypothetical protein 3598156 10105519 Alide_3445 Alicycliphilus denitrificans BC hypothetical protein YP_004128051.1 3597764 D 596153 CDS YP_004128052.1 319764115 10105520 3598295..3598609 1 NC_014910.1 KEGG: dia:Dtpsy_2837 transport-associated; PFAM: transport-associated; SMART: Transport-associated and nodulation region; transport-associated protein 3598609 10105520 Alide_3446 Alicycliphilus denitrificans BC transport-associated protein YP_004128052.1 3598295 D 596153 CDS YP_004128053.1 319764116 10105521 complement(3598765..3599253) 1 NC_014910.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: dia:Dtpsy_2839 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 3599253 10105521 Alide_3447 Alicycliphilus denitrificans BC pantetheine-phosphate adenylyltransferase YP_004128053.1 3598765 R 596153 CDS YP_004128054.1 319764117 10105522 complement(3599381..3599971) 1 NC_014910.1 TIGRFAM: methyltransferase; KEGG: dia:Dtpsy_2840 methyltransferase; PFAM: Conserved hypothetical protein CHP00095; methyltransferase 3599971 10105522 Alide_3448 Alicycliphilus denitrificans BC methyltransferase YP_004128054.1 3599381 R 596153 CDS YP_004128055.1 319764118 10105523 complement(3599968..3601326) 1 NC_014910.1 KEGG: dia:Dtpsy_2841 peptidase M16 domain protein; manually curated; PFAM: peptidase M16 domain protein; peptidase m16 domain-containing protein 3601326 10105523 Alide_3449 Alicycliphilus denitrificans BC peptidase m16 domain-containing protein YP_004128055.1 3599968 R 596153 CDS YP_004128056.1 319764119 10105524 complement(3601340..3602770) 1 NC_014910.1 PFAM: peptidase M16 domain protein; KEGG: dia:Dtpsy_2842 peptidase M16 domain protein; peptidase m16 domain-containing protein 3602770 10105524 Alide_3450 Alicycliphilus denitrificans BC peptidase m16 domain-containing protein YP_004128056.1 3601340 R 596153 CDS YP_004128057.1 319764120 10105525 3602800..3603924 1 NC_014910.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: dia:Dtpsy_2843 signal recognition particle-docking protein FtsY; SMART: AAA ATPase; signal recognition particle-docking protein ftsy 3603924 10105525 Alide_3451 Alicycliphilus denitrificans BC signal recognition particle-docking protein ftsy YP_004128057.1 3602800 D 596153 CDS YP_004128058.1 319764121 10105526 complement(3603938..3604891) 1 NC_014910.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_1392 LysR family transcriptional regulator; LysR family transcriptional regulator 3604891 10105526 Alide_3452 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128058.1 3603938 R 596153 CDS YP_004128059.1 319764122 10105527 3605010..3605948 1 NC_014910.1 PFAM: dihydrodipicolinate synthetase; KEGG: dac:Daci_3342 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 3605948 10105527 Alide_3453 Alicycliphilus denitrificans BC dihydrodipicolinate synthetase YP_004128059.1 3605010 D 596153 CDS YP_004128060.1 319764123 10105528 3605980..3606945 1 NC_014910.1 KEGG: dac:Daci_3341 hypothetical protein; hypothetical protein 3606945 10105528 Alide_3454 Alicycliphilus denitrificans BC hypothetical protein YP_004128060.1 3605980 D 596153 CDS YP_004128061.1 319764124 10105529 3606935..3607639 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vap:Vapar_5678 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 3607639 10105529 Alide_3455 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004128061.1 3606935 D 596153 CDS YP_004128062.1 319764125 10105530 3607665..3608831 1 NC_014910.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: dac:Daci_3339 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 3608831 10105530 Alide_3456 Alicycliphilus denitrificans BC mandelate racemase/muconate lactonizing protein YP_004128062.1 3607665 D 596153 CDS YP_004128063.1 319764126 10105531 complement(3608846..3609202) 1 NC_014910.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: dia:Dtpsy_2844 CutA1 divalent ion tolerance protein; cuta1 divalent ion tolerance protein 3609202 10105531 Alide_3457 Alicycliphilus denitrificans BC cuta1 divalent ion tolerance protein YP_004128063.1 3608846 R 596153 CDS YP_004128064.1 319764127 10105532 complement(3609317..3610306) 1 NC_014910.1 KEGG: dac:Daci_4557 hypothetical protein; hypothetical protein 3610306 10105532 Alide_3458 Alicycliphilus denitrificans BC hypothetical protein YP_004128064.1 3609317 R 596153 CDS YP_004128065.1 319764128 10105533 complement(3610361..3611332) 1 NC_014910.1 KEGG: vap:Vapar_6186 hypothetical protein; hypothetical protein 3611332 10105533 Alide_3459 Alicycliphilus denitrificans BC hypothetical protein YP_004128065.1 3610361 R 596153 CDS YP_004128066.1 319764129 10105534 3611418..3614063 1 NC_014910.1 PFAM: aconitate hydratase domain-containing protein; KEGG: dac:Daci_4555 aconitate hydratase; aconitate hydratase domain-containing protein 3614063 10105534 Alide_3460 Alicycliphilus denitrificans BC aconitate hydratase domain-containing protein YP_004128066.1 3611418 D 596153 CDS YP_004128067.1 319764130 10105535 3614074..3615015 1 NC_014910.1 KEGG: dac:Daci_4554 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3615015 10105535 Alide_3461 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004128067.1 3614074 D 596153 CDS YP_004128068.1 319764131 10105536 3615028..3615765 1 NC_014910.1 KEGG: dac:Daci_4553 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 3615765 10105536 Alide_3462 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128068.1 3615028 D 596153 CDS YP_004128069.1 319764132 10105537 3615762..3616844 1 NC_014910.1 KEGG: dac:Daci_4552 hemagglutinin-related protein; hemagglutinin-like protein 3616844 10105537 Alide_3463 Alicycliphilus denitrificans BC hemagglutinin-like protein YP_004128069.1 3615762 D 596153 CDS YP_004128070.1 319764133 10105538 complement(3616847..3617914) 1 NC_014910.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rpa:RPA3655 alcohol dehydrogenase; molecular chaperone GroES 3617914 10105538 Alide_3464 Alicycliphilus denitrificans BC molecular chaperone GroES YP_004128070.1 3616847 R 596153 CDS YP_004128071.1 319764134 10105539 complement(3618081..3618767) 1 NC_014910.1 KEGG: pol:Bpro_1513 hydratase/decarboxylase; hydratase/decarboxylase 3618767 10105539 Alide_3465 Alicycliphilus denitrificans BC hydratase/decarboxylase YP_004128071.1 3618081 R 596153 CDS YP_004128072.1 319764135 10105540 3619314..3619979 1 NC_014910.1 KEGG: dac:Daci_2714 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 3619979 10105540 Alide_3466 Alicycliphilus denitrificans BC response regulator receiver YP_004128072.1 3619314 D 596153 CDS YP_004128073.1 319764136 10105541 3619983..3621380 1 NC_014910.1 manually curated; PFAM: histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: dac:Daci_2713 histidine kinase; SMART: histidine kinase A domain protein; ATP-binding region ATPase domain protein; histidine kinase a domain-containing protein 3621380 10105541 Alide_3467 Alicycliphilus denitrificans BC histidine kinase a domain-containing protein YP_004128073.1 3619983 D 596153 CDS YP_004128074.1 319764137 10105542 complement(3621383..3622078) 1 NC_014910.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: dac:Daci_2712 hypothetical protein; hypothetical protein 3622078 10105542 Alide_3468 Alicycliphilus denitrificans BC hypothetical protein YP_004128074.1 3621383 R 596153 CDS YP_004128075.1 319764138 10105543 complement(3622104..3622661) 1 NC_014910.1 manually curated; KEGG: dac:Daci_2711 cytochrome b561; cytochrome b561 3622661 10105543 Alide_3469 Alicycliphilus denitrificans BC cytochrome b561 YP_004128075.1 3622104 R 596153 CDS YP_004128076.1 319764139 10105544 3623015..3624064 1 NC_014910.1 KEGG: dac:Daci_2710 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 3624064 10105544 Alide_3470 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004128076.1 3623015 D 596153 CDS YP_004128077.1 319764140 10105545 3624075..3627167 1 NC_014910.1 KEGG: dac:Daci_2709 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; heavy metal efflux pump, czca family 3627167 10105545 Alide_3471 Alicycliphilus denitrificans BC heavy metal efflux pump, czca family YP_004128077.1 3624075 D 596153 CDS YP_004128078.1 319764141 10105546 3627164..3627505 1 NC_014910.1 KEGG: dac:Daci_2708 hypothetical protein; hypothetical protein 3627505 10105546 Alide_3472 Alicycliphilus denitrificans BC hypothetical protein YP_004128078.1 3627164 D 596153 CDS YP_004128079.1 319764142 10105547 3627502..3628764 1 NC_014910.1 KEGG: dac:Daci_2707 outer membrane efflux protein; outer membrane efflux protein 3628764 10105547 Alide_3473 Alicycliphilus denitrificans BC outer membrane efflux protein YP_004128079.1 3627502 D 596153 CDS YP_004128080.1 319764143 10105548 complement(3629018..3629800) 1 NC_014910.1 KEGG: dba:Dbac_1405 ABC transporter related; hypothetical protein 3629800 10105548 Alide_3474 Alicycliphilus denitrificans BC hypothetical protein YP_004128080.1 3629018 R 596153 CDS YP_004128081.1 319764144 10105549 3630179..3631114 1 NC_014910.1 KEGG: dia:Dtpsy_2845 RNA polymerase, sigma 32 subunit, RpoH; TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; RNA polymerase sigma factor rpoh 3631114 10105549 Alide_3475 Alicycliphilus denitrificans BC RNA polymerase sigma factor rpoh YP_004128081.1 3630179 D 596153 CDS YP_004128082.1 319764145 10105550 3631257..3632267 1 NC_014910.1 KEGG: dia:Dtpsy_2846 hypothetical protein; hypothetical protein 3632267 10105550 Alide_3476 Alicycliphilus denitrificans BC hypothetical protein YP_004128082.1 3631257 D 596153 CDS YP_004128083.1 319764146 10105551 complement(3632301..3632864) 1 NC_014910.1 PFAM: electron transport protein SCO1/SenC; KEGG: dia:Dtpsy_2849 electron transport protein SCO1/SenC; electron transport protein sco1/senc 3632864 10105551 Alide_3477 Alicycliphilus denitrificans BC electron transport protein sco1/senc YP_004128083.1 3632301 R 596153 CDS YP_004128084.1 319764147 10105552 complement(3632922..3633848) 1 NC_014910.1 KEGG: dia:Dtpsy_2850 protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 3633848 10105552 Alide_3478 Alicycliphilus denitrificans BC protoheme IX farnesyltransferase YP_004128084.1 3632922 R 596153 CDS YP_004128085.1 319764148 10105553 complement(3633845..3635002) 1 NC_014910.1 PFAM: cytochrome oxidase assembly; KEGG: ajs:Ajs_3528 cytochrome oxidase assembly; cytochrome oxidase assembly 3635002 10105553 Alide_3479 Alicycliphilus denitrificans BC cytochrome oxidase assembly YP_004128085.1 3633845 R 596153 CDS YP_004128086.1 319764149 10105554 complement(3634999..3635754) 1 NC_014910.1 KEGG: ajs:Ajs_3529 hypothetical protein; hypothetical protein 3635754 10105554 Alide_3480 Alicycliphilus denitrificans BC hypothetical protein YP_004128086.1 3634999 R 596153 CDS YP_004128087.1 319764150 10105555 complement(3635696..3636463) 1 NC_014910.1 KEGG: dia:Dtpsy_2853 transmembrane cytochrome oxidase; transmembrane cytochrome oxidase 3636463 10105555 Alide_3481 Alicycliphilus denitrificans BC transmembrane cytochrome oxidase YP_004128087.1 3635696 R 596153 CDS YP_004128088.1 319764151 10105556 3636470..3636703 1 NC_014910.1 KEGG: ajs:Ajs_3531 transmembrane protein; transmembrane protein 3636703 10105556 Alide_3482 Alicycliphilus denitrificans BC transmembrane protein YP_004128088.1 3636470 D 596153 CDS YP_004128089.1 319764152 10105557 complement(3636777..3637661) 1 NC_014910.1 PFAM: cytochrome c oxidase subunit III; KEGG: dia:Dtpsy_2855 cytochrome c oxidase subunit III; cytochrome c oxidase subunit iii 3637661 10105557 Alide_3483 Alicycliphilus denitrificans BC cytochrome c oxidase subunit iii YP_004128089.1 3636777 R 596153 CDS YP_004128090.1 319764153 10105558 complement(3637721..3637933) 1 NC_014910.1 KEGG: dia:Dtpsy_2856 hypothetical protein; hypothetical protein 3637933 10105558 Alide_3484 Alicycliphilus denitrificans BC hypothetical protein YP_004128090.1 3637721 R 596153 CDS YP_004128091.1 319764154 10105559 complement(3637933..3638556) 1 NC_014910.1 PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: dia:Dtpsy_2857 cytochrome c oxidase assembly protein; cytochrome c oxidase assembly protein ctag/cox11 3638556 10105559 Alide_3485 Alicycliphilus denitrificans BC cytochrome c oxidase assembly protein ctag/cox11 YP_004128091.1 3637933 R 596153 CDS YP_004128092.1 319764155 10105560 complement(3638572..3638688) 1 NC_014910.1 KEGG: vap:Vapar_4390 hypothetical protein; hypothetical protein 3638688 10105560 Alide_3486 Alicycliphilus denitrificans BC hypothetical protein YP_004128092.1 3638572 R 596153 CDS YP_004128093.1 319764156 10105561 complement(3638706..3640337) 1 NC_014910.1 KEGG: ajs:Ajs_3536 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase, subunit i 3640337 10105561 Alide_3487 Alicycliphilus denitrificans BC cytochrome c oxidase, subunit i YP_004128093.1 3638706 R 596153 CDS YP_004128094.1 319764157 10105562 complement(3640375..3641538) 1 NC_014910.1 KEGG: dia:Dtpsy_2860 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome c class I; cytochrome c oxidase, subunit ii 3641538 10105562 Alide_3488 Alicycliphilus denitrificans BC cytochrome c oxidase, subunit ii YP_004128094.1 3640375 R 596153 CDS YP_004128095.1 319764158 10105563 complement(3641990..3642898) 1 NC_014910.1 KEGG: ajs:Ajs_3539 biotin synthesis protein BioC; biotin synthesis protein bioc 3642898 10105563 Alide_3489 Alicycliphilus denitrificans BC biotin synthesis protein bioc YP_004128095.1 3641990 R 596153 CDS YP_004128096.1 319764159 10105564 3642934..3643671 1 NC_014910.1 PFAM: phosphoribosyltransferase; KEGG: ajs:Ajs_3540 ComF family protein; phosphoribosyltransferase 3643671 10105564 Alide_3490 Alicycliphilus denitrificans BC phosphoribosyltransferase YP_004128096.1 3642934 D 596153 CDS YP_004128097.1 319764160 10105565 3643726..3644202 1 NC_014910.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dia:Dtpsy_2864 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase (spou) 3644202 10105565 Alide_3491 Alicycliphilus denitrificans BC tRNA/rRNA methyltransferase (spou) YP_004128097.1 3643726 D 596153 CDS YP_004128098.1 319764161 10105566 complement(3644199..3645122) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_3911 LysR family transcriptional regulator; LysR family transcriptional regulator 3645122 10105566 Alide_3492 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128098.1 3644199 R 596153 CDS YP_004128099.1 319764162 10105567 3645349..3645672 1 NC_014910.1 KEGG: aav:Aave_3912 hypothetical protein; hypothetical protein 3645672 10105567 Alide_3493 Alicycliphilus denitrificans BC hypothetical protein YP_004128099.1 3645349 D 596153 CDS YP_004128100.1 319764163 10105568 complement(3645752..3646372) 1 NC_014910.1 KEGG: dia:Dtpsy_2866 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 3646372 10105568 Alide_3494 Alicycliphilus denitrificans BC cobyrinic acid ac-diamide synthase YP_004128100.1 3645752 R 596153 CDS YP_004128101.1 319764164 10105569 complement(3646452..3647090) 1 NC_014910.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3544 lysine exporter protein LysE/YggA; lysine exporter protein (lyse/ygga) 3647090 10105569 Alide_3495 Alicycliphilus denitrificans BC lysine exporter protein (lyse/ygga) YP_004128101.1 3646452 R 596153 CDS YP_004128102.1 319764165 10105570 3647209..3649059 1 NC_014910.1 KEGG: dia:Dtpsy_2868 glutathione-regulated potassium-efflux system protein KefC; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; potassium efflux system protein 3649059 10105570 Alide_3496 Alicycliphilus denitrificans BC potassium efflux system protein YP_004128102.1 3647209 D 596153 CDS YP_004128103.1 319764166 10105571 complement(3649114..3649908) 1 NC_014910.1 KEGG: mav:MAV_1744 transcriptional regulator, GntR family protein; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; ubic transcription regulator-associated domain-containing protein 3649908 10105571 Alide_3497 Alicycliphilus denitrificans BC ubic transcription regulator-associated domain-containing protein YP_004128103.1 3649114 R 596153 CDS YP_004128104.1 319764167 10105572 3650072..3650935 1 NC_014910.1 PFAM: isocitrate lyase and phosphorylmutase; KEGG: cak:Caul_0509 carboxyvinyl-carboxyphosphonate phosphorylmutase; isocitrate lyase and phosphorylmutase 3650935 10105572 Alide_3498 Alicycliphilus denitrificans BC isocitrate lyase and phosphorylmutase YP_004128104.1 3650072 D 596153 CDS YP_004128105.1 319764168 10105573 3650943..3652352 1 NC_014910.1 KEGG: bja:bll0416 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase large subunit 3652352 10105573 Alide_3499 Alicycliphilus denitrificans BC 3-isopropylmalate dehydratase large subunit YP_004128105.1 3650943 D 596153 CDS YP_004128106.1 319764169 10105574 3652355..3652987 1 NC_014910.1 KEGG: cak:Caul_0508 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase small subunit 3652987 10105574 Alide_3500 Alicycliphilus denitrificans BC 3-isopropylmalate dehydratase small subunit YP_004128106.1 3652355 D 596153 CDS YP_004128107.1 319764170 10105575 3653010..3654011 1 NC_014910.1 KEGG: pol:Bpro_2294 hypothetical protein; hypothetical protein 3654011 10105575 Alide_3501 Alicycliphilus denitrificans BC hypothetical protein YP_004128107.1 3653010 D 596153 CDS YP_004128108.1 319764171 10105576 3654023..3655201 1 NC_014910.1 PFAM: protein of unknown function DUF453; KEGG: cak:Caul_0497 hypothetical protein; hypothetical protein 3655201 10105576 Alide_3502 Alicycliphilus denitrificans BC hypothetical protein YP_004128108.1 3654023 D 596153 CDS YP_004128109.1 319764172 10105577 3655206..3656639 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: vei:Veis_4268 MmgE/PrpD family protein; mmge/prpd family protein 3656639 10105577 Alide_3503 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004128109.1 3655206 D 596153 CDS YP_004128110.1 319764173 10105578 3656636..3657595 1 NC_014910.1 KEGG: vap:Vapar_4085 hypothetical protein; hypothetical protein 3657595 10105578 Alide_3504 Alicycliphilus denitrificans BC hypothetical protein YP_004128110.1 3656636 D 596153 CDS YP_004128111.1 319764174 10105579 3657622..3658617 1 NC_014910.1 KEGG: vap:Vapar_4972 hypothetical protein; hypothetical protein 3658617 10105579 Alide_3505 Alicycliphilus denitrificans BC hypothetical protein YP_004128111.1 3657622 D 596153 CDS YP_004128112.1 319764175 10105580 complement(3658731..3659918) 1 NC_014910.1 TIGRFAM: amidohydrolase; KEGG: bph:Bphy_3769 amidohydrolase; PFAM: peptidase M20; amidohydrolase 3659918 10105580 Alide_3506 Alicycliphilus denitrificans BC amidohydrolase YP_004128112.1 3658731 R 596153 CDS YP_004128113.1 319764176 10105581 complement(3659932..3660561) 1 NC_014910.1 KEGG: bpt:Bpet0051 secreted protein; secreted protein 3660561 10105581 Alide_3507 Alicycliphilus denitrificans BC secreted protein YP_004128113.1 3659932 R 596153 CDS YP_004128114.1 319764177 10105582 3660606..3661430 1 NC_014910.1 PFAM: LysR substrate-binding; KEGG: rec:RHECIAT_CH0001484 transcriptional regulator protein, LysR family; LysR family transcriptional regulator 3661430 10105582 Alide_3508 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128114.1 3660606 D 596153 CDS YP_004128115.1 319764178 10105584 complement(3661812..3662804) 1 NC_014910.1 KEGG: dia:Dtpsy_2869 hypothetical protein; hypothetical protein 3662804 10105584 Alide_3510 Alicycliphilus denitrificans BC hypothetical protein YP_004128115.1 3661812 R 596153 CDS YP_004128116.1 319764179 10105585 complement(3662849..3663574) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_3940 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 3663574 10105585 Alide_3511 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004128116.1 3662849 R 596153 CDS YP_004128117.1 319764180 10105586 complement(3663636..3664838) 1 NC_014910.1 TIGRFAM: beta-ketoadipyl CoA thiolase; acetyl-CoA acetyltransferase; KEGG: dac:Daci_5563 beta-ketoadipyl CoA thiolase; PFAM: Thiolase-like; beta-ketoadipyl CoA thiolase 3664838 10105586 Alide_3512 Alicycliphilus denitrificans BC beta-ketoadipyl CoA thiolase YP_004128117.1 3663636 R 596153 CDS YP_004128118.1 319764181 10105587 complement(3664916..3665560) 1 NC_014910.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: dia:Dtpsy_2872 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3665560 10105587 Alide_3513 Alicycliphilus denitrificans BC 3-oxoacid CoA-transferase subunit B YP_004128118.1 3664916 R 596153 CDS YP_004128119.1 319764182 10105588 complement(3665583..3666278) 1 NC_014910.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: dia:Dtpsy_2873 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3666278 10105588 Alide_3514 Alicycliphilus denitrificans BC 3-oxoacid CoA-transferase subunit A YP_004128119.1 3665583 R 596153 CDS YP_004128120.1 319764183 10105589 3666381..3667184 1 NC_014910.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; KEGG: dia:Dtpsy_2874 transcriptional regulator, IclR family; SMART: regulatory protein IclR; beta-ketoadipate pathway transcriptional regulator 3667184 10105589 Alide_3515 Alicycliphilus denitrificans BC beta-ketoadipate pathway transcriptional regulator YP_004128120.1 3666381 D 596153 CDS YP_004128121.1 319764184 10105590 3667195..3667629 1 NC_014910.1 PFAM: Domain of unknown function DUF1841; KEGG: ajs:Ajs_3553 hypothetical protein; hypothetical protein 3667629 10105590 Alide_3516 Alicycliphilus denitrificans BC hypothetical protein YP_004128121.1 3667195 D 596153 CDS YP_004128122.1 319764185 10105591 complement(3667564..3668445) 1 NC_014910.1 PFAM: UspA domain-containing protein; KEGG: ajs:Ajs_3554 UspA domain-containing protein; uspa domain-containing protein 3668445 10105591 Alide_3517 Alicycliphilus denitrificans BC uspa domain-containing protein YP_004128122.1 3667564 R 596153 CDS YP_004128123.1 319764186 10105592 complement(3668892..3669551) 1 NC_014910.1 PFAM: cytochrome c class I; KEGG: dia:Dtpsy_2878 cytochrome c class I; cytochrome c class i 3669551 10105592 Alide_3518 Alicycliphilus denitrificans BC cytochrome c class i YP_004128123.1 3668892 R 596153 CDS YP_004128124.1 319764187 10105593 3669672..3670514 1 NC_014910.1 KEGG: ajs:Ajs_3556 ATPase central domain-containing protein; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATPase AAA 3670514 10105593 Alide_3519 Alicycliphilus denitrificans BC ATPase AAA YP_004128124.1 3669672 D 596153 CDS YP_004128125.1 319764188 10105594 3670526..3671125 1 NC_014910.1 KEGG: dia:Dtpsy_2881 GCN5-related N-acetyltransferase; Gcn5-like N-acetyltransferase 3671125 10105594 Alide_3520 Alicycliphilus denitrificans BC Gcn5-like N-acetyltransferase YP_004128125.1 3670526 D 596153 CDS YP_004128126.1 319764189 10105595 complement(3671141..3672154) 1 NC_014910.1 KEGG: cti:RALTA_B1738 conserved hypothetical protein; UPF0065; hypothetical protein 3672154 10105595 Alide_3521 Alicycliphilus denitrificans BC hypothetical protein YP_004128126.1 3671141 R 596153 CDS YP_004128127.1 319764190 10105596 3672415..3673194 1 NC_014910.1 KEGG: bpy:Bphyt_0617 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain-containing protein; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3673194 10105596 Alide_3522 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004128127.1 3672415 D 596153 CDS YP_004128128.1 319764191 10105597 3673202..3674398 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sti:Sthe_3003 formyl-CoA transferase; l-carnitine dehydratase/bile acid-inducible protein f 3674398 10105597 Alide_3523 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004128128.1 3673202 D 596153 CDS YP_004128129.1 319764192 10105598 3674415..3675575 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: sti:Sthe_1794 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 3675575 10105598 Alide_3524 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004128129.1 3674415 D 596153 CDS YP_004128130.1 319764193 10105599 3675588..3676370 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pzu:PHZ_c3022 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase 3676370 10105599 Alide_3525 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004128130.1 3675588 D 596153 CDS YP_004128131.1 319764194 10105600 3676355..3677704 1 NC_014910.1 PFAM: MmgE/PrpD family protein; KEGG: nmg:Nmag_3457 MmgE/PrpD family protein; mmge/prpd family protein 3677704 10105600 Alide_3526 Alicycliphilus denitrificans BC mmge/prpd family protein YP_004128131.1 3676355 D 596153 CDS YP_004128132.1 319764195 10105601 3677779..3678966 1 NC_014910.1 KEGG: ajs:Ajs_3559 hypothetical protein; hypothetical protein 3678966 10105601 Alide_3527 Alicycliphilus denitrificans BC hypothetical protein YP_004128132.1 3677779 D 596153 CDS YP_004128133.1 319764196 10105602 3678971..3680866 1 NC_014910.1 PFAM: surface antigen (D15); KEGG: dia:Dtpsy_2883 surface antigen (D15); surface antigen (d15) 3680866 10105602 Alide_3528 Alicycliphilus denitrificans BC surface antigen (d15) YP_004128133.1 3678971 D 596153 CDS YP_004128134.1 319764197 10105603 3680972..3685060 1 NC_014910.1 PFAM: protein of unknown function DUF490; KEGG: ajs:Ajs_3561 hypothetical protein; hypothetical protein 3685060 10105603 Alide_3529 Alicycliphilus denitrificans BC hypothetical protein YP_004128134.1 3680972 D 596153 CDS YP_004128135.1 319764198 10105604 complement(3685294..3686262) 1 NC_014910.1 KEGG: sdn:Sden_0296 hypothetical protein; hypothetical protein 3686262 10105604 Alide_3530 Alicycliphilus denitrificans BC hypothetical protein YP_004128135.1 3685294 R 596153 CDS YP_004128136.1 319764199 10105605 complement(3686532..3686756) 1 NC_014910.1 KEGG: sbi:SORBI_03g042340 hypothetical protein; hypothetical protein 3686756 10105605 Alide_3531 Alicycliphilus denitrificans BC hypothetical protein YP_004128136.1 3686532 R 596153 CDS YP_004128137.1 319764200 10105606 complement(3686847..3687038) 1 NC_014910.1 KEGG: rpf:Rpic12D_4805 hypothetical protein; hypothetical protein 3687038 10105606 Alide_3532 Alicycliphilus denitrificans BC hypothetical protein YP_004128137.1 3686847 R 596153 CDS YP_004128138.1 319764201 10105607 complement(3687035..3687436) 1 NC_014910.1 KEGG: vei:Veis_3760 hypothetical protein; hypothetical protein 3687436 10105607 Alide_3533 Alicycliphilus denitrificans BC hypothetical protein YP_004128138.1 3687035 R 596153 CDS YP_004128139.1 319764202 10105608 complement(3687429..3687737) 1 NC_014910.1 KEGG: dhd:Dhaf_3041 excinuclease ABC subunit C; excinuclease abc subunit c 3687737 10105608 Alide_3534 Alicycliphilus denitrificans BC excinuclease abc subunit c YP_004128139.1 3687429 R 596153 CDS YP_004128140.1 319764203 10105609 complement(3687857..3689104) 1 NC_014910.1 KEGG: dac:Daci_3452 lysozyme; hypothetical protein 3689104 10105609 Alide_3535 Alicycliphilus denitrificans BC hypothetical protein YP_004128140.1 3687857 R 596153 CDS YP_004128141.1 319764204 10105610 complement(3689109..3689447) 1 NC_014910.1 KEGG: ana:all0634 hypothetical protein; hypothetical protein 3689447 10105610 Alide_3536 Alicycliphilus denitrificans BC hypothetical protein YP_004128141.1 3689109 R 596153 CDS YP_004128142.1 319764205 10105611 complement(3689490..3690398) 1 NC_014910.1 KEGG: mav:MAV_0791 hypothetical protein; hypothetical protein 3690398 10105611 Alide_3537 Alicycliphilus denitrificans BC hypothetical protein YP_004128142.1 3689490 R 596153 CDS YP_004128143.1 319764206 10105612 complement(3690395..3691843) 1 NC_014910.1 KEGG: cel:Y25C1A.3 C-type LECtin; hypothetical protein 3691843 10105612 Alide_3538 Alicycliphilus denitrificans BC hypothetical protein YP_004128143.1 3690395 R 596153 CDS YP_004128144.1 319764207 10105613 complement(3691853..3694126) 1 NC_014910.1 KEGG: nml:Namu_4228 conserved repeat domain protein; hypothetical protein 3694126 10105613 Alide_3539 Alicycliphilus denitrificans BC hypothetical protein YP_004128144.1 3691853 R 596153 CDS YP_004128145.1 319764208 10105614 complement(3694328..3694780) 1 NC_014910.1 KEGG: cph:Cpha266_1609 hypothetical protein; hypothetical protein 3694780 10105614 Alide_3540 Alicycliphilus denitrificans BC hypothetical protein YP_004128145.1 3694328 R 596153 CDS YP_004128146.1 319764209 10105615 complement(3694972..3696600) 1 NC_014910.1 KEGG: nmg:Nmag_3292 Cna B domain protein; hypothetical protein 3696600 10105615 Alide_3541 Alicycliphilus denitrificans BC hypothetical protein YP_004128146.1 3694972 R 596153 CDS YP_004128147.1 319764210 10105616 complement(3696597..3699761) 1 NC_014910.1 KEGG: cre:CHLREDRAFT_167270 hypothetical protein; hypothetical protein 3699761 10105616 Alide_3542 Alicycliphilus denitrificans BC hypothetical protein YP_004128147.1 3696597 R 596153 CDS YP_004128148.1 319764211 10105617 complement(3699776..3702571) 1 NC_014910.1 KEGG: pna:Pnap_2248 TP901 family phage tail tape measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, tp901 family 3702571 10105617 Alide_3543 Alicycliphilus denitrificans BC phage tail tape measure protein, tp901 family YP_004128148.1 3699776 R 596153 CDS YP_004128149.1 319764212 10105618 complement(3702647..3703438) 1 NC_014910.1 KEGG: hth:HTH_0895 hypothetical protein; hypothetical protein 3703438 10105618 Alide_3544 Alicycliphilus denitrificans BC hypothetical protein YP_004128149.1 3702647 R 596153 CDS YP_004128150.1 319764213 10105619 complement(3703474..3703875) 1 NC_014910.1 KEGG: pna:Pnap_2250 hypothetical protein; hypothetical protein 3703875 10105619 Alide_3545 Alicycliphilus denitrificans BC hypothetical protein YP_004128150.1 3703474 R 596153 CDS YP_004128151.1 319764214 10105620 complement(3703888..3704226) 1 NC_014910.1 KEGG: pna:Pnap_2251 hypothetical protein; hypothetical protein 3704226 10105620 Alide_3546 Alicycliphilus denitrificans BC hypothetical protein YP_004128151.1 3703888 R 596153 CDS YP_004128152.1 319764215 10105621 complement(3704229..3705242) 1 NC_014910.1 KEGG: mes:Meso_1217 phage protein GP20; phage protein gp20 3705242 10105621 Alide_3547 Alicycliphilus denitrificans BC phage protein gp20 YP_004128152.1 3704229 R 596153 CDS YP_004128153.1 319764216 10105622 complement(3705270..3705656) 1 NC_014910.1 KEGG: xal:XALc_0211 hypothetical protein; hypothetical protein 3705656 10105622 Alide_3548 Alicycliphilus denitrificans BC hypothetical protein YP_004128153.1 3705270 R 596153 CDS YP_004128154.1 319764217 10105623 complement(3705668..3707023) 1 NC_014910.1 PFAM: peptidase S49; KEGG: met:M446_4143 peptidase S49; peptidase s49 3707023 10105623 Alide_3549 Alicycliphilus denitrificans BC peptidase s49 YP_004128154.1 3705668 R 596153 CDS YP_004128155.1 319764218 10105624 complement(3707020..3708636) 1 NC_014910.1 KEGG: lhk:LHK_01658 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; phage portal protein, lambda family 3708636 10105624 Alide_3550 Alicycliphilus denitrificans BC phage portal protein, lambda family YP_004128155.1 3707020 R 596153 CDS YP_004128156.1 319764219 10105625 complement(3708640..3708867) 1 NC_014910.1 KEGG: sus:Acid_3400 hypothetical protein; hypothetical protein 3708867 10105625 Alide_3551 Alicycliphilus denitrificans BC hypothetical protein YP_004128156.1 3708640 R 596153 CDS YP_004128157.1 319764220 10105626 complement(3708922..3709239) 1 NC_014910.1 KEGG: hmg:100211620 similar to H28G03.4; hypothetical protein 3709239 10105626 Alide_3552 Alicycliphilus denitrificans BC hypothetical protein YP_004128157.1 3708922 R 596153 CDS YP_004128158.1 319764221 10105627 complement(3709236..3711296) 1 NC_014910.1 PFAM: terminase GpA; KEGG: dac:Daci_4687 terminase GpA; terminase gpa 3711296 10105627 Alide_3553 Alicycliphilus denitrificans BC terminase gpa YP_004128158.1 3709236 R 596153 CDS YP_004128159.1 319764222 10105628 complement(3711293..3712042) 1 NC_014910.1 PFAM: DNA packaging Nu1; KEGG: dac:Daci_4688 hypothetical protein; DNA packaging nu1 3712042 10105628 Alide_3554 Alicycliphilus denitrificans BC DNA packaging nu1 YP_004128159.1 3711293 R 596153 CDS YP_004128160.1 319764223 10105629 complement(3712175..3712273) 1 NC_014910.1 hypothetical protein 3712273 10105629 Alide_3555 Alicycliphilus denitrificans BC hypothetical protein YP_004128160.1 3712175 R 596153 CDS YP_004128161.1 319764224 10105630 complement(3712270..3712599) 1 NC_014910.1 KEGG: bph:Bphy_1886 hypothetical protein; hypothetical protein 3712599 10105630 Alide_3556 Alicycliphilus denitrificans BC hypothetical protein YP_004128161.1 3712270 R 596153 CDS YP_004128162.1 319764225 10105631 complement(3712596..3713240) 1 NC_014910.1 KEGG: bpt:Bpet0970 hypothetical protein; hypothetical protein 3713240 10105631 Alide_3557 Alicycliphilus denitrificans BC hypothetical protein YP_004128162.1 3712596 R 596153 CDS YP_004128163.1 319764226 10105632 complement(3713188..3714198) 1 NC_014910.1 KEGG: apt:APA01_05090 hypothetical protein; hypothetical protein 3714198 10105632 Alide_3558 Alicycliphilus denitrificans BC hypothetical protein YP_004128163.1 3713188 R 596153 CDS YP_004128164.1 319764227 10105633 complement(3714202..3714957) 1 NC_014910.1 KEGG: bvu:BVU_2841 hypothetical protein; hypothetical protein 3714957 10105633 Alide_3559 Alicycliphilus denitrificans BC hypothetical protein YP_004128164.1 3714202 R 596153 CDS YP_004128165.1 319764228 10105634 complement(3714954..3715646) 1 NC_014910.1 KEGG: hiq:CGSHiGG_04860 hypothetical protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parb domain-containing protein nuclease 3715646 10105634 Alide_3560 Alicycliphilus denitrificans BC parb domain-containing protein nuclease YP_004128165.1 3714954 R 596153 CDS YP_004128166.1 319764229 10105635 complement(3715665..3716351) 1 NC_014910.1 KEGG: aav:Aave_1760 hypothetical protein; hypothetical protein 3716351 10105635 Alide_3561 Alicycliphilus denitrificans BC hypothetical protein YP_004128166.1 3715665 R 596153 CDS YP_004128167.1 319764230 10105636 complement(3716354..3717178) 1 NC_014910.1 KEGG: pna:Pnap_2259 hypothetical protein; hypothetical protein 3717178 10105636 Alide_3562 Alicycliphilus denitrificans BC hypothetical protein YP_004128167.1 3716354 R 596153 CDS YP_004128168.1 319764231 10105638 complement(3717366..3717914) 1 NC_014910.1 KEGG: pna:Pnap_2262 hypothetical protein; hypothetical protein 3717914 10105638 Alide_3564 Alicycliphilus denitrificans BC hypothetical protein YP_004128168.1 3717366 R 596153 CDS YP_004128169.1 319764232 10105639 complement(3717921..3718238) 1 NC_014910.1 KEGG: pzu:PHZ_c1002 competence-damaged inducible protein; competence-damaged inducible protein 3718238 10105639 Alide_3565 Alicycliphilus denitrificans BC competence-damaged inducible protein YP_004128169.1 3717921 R 596153 CDS YP_004128170.1 319764233 10105640 3718373..3718630 1 NC_014910.1 KEGG: act:ACLA_020300 Hsp70 family chaperone Lhs1/Orp150, putative; molecular chaperone DnaK 3718630 10105640 Alide_3566 Alicycliphilus denitrificans BC molecular chaperone DnaK YP_004128170.1 3718373 D 596153 CDS YP_004128171.1 319764234 10105641 3719126..3719542 1 NC_014910.1 manually curated; KEGG: pfl:PFL_2126 Cro/CI family transcriptional regulator; hypothetical protein 3719542 10105641 Alide_3567 Alicycliphilus denitrificans BC hypothetical protein YP_004128171.1 3719126 D 596153 CDS YP_004128172.1 319764235 10105642 3719835..3720188 1 NC_014910.1 KEGG: sbn:Sbal195_0751 hypothetical protein; hypothetical protein 3720188 10105642 Alide_3568 Alicycliphilus denitrificans BC hypothetical protein YP_004128172.1 3719835 D 596153 CDS YP_004128173.1 319764236 10105643 complement(3720275..3720787) 1 NC_014910.1 PFAM: Protein of unknown function DUF2511; KEGG: pna:Pnap_2266 hypothetical protein; hypothetical protein 3720787 10105643 Alide_3569 Alicycliphilus denitrificans BC hypothetical protein YP_004128173.1 3720275 R 596153 CDS YP_004128174.1 319764237 10105644 3720896..3721111 1 NC_014910.1 KEGG: mva:Mvan_4791 OsmC family protein; hypothetical protein 3721111 10105644 Alide_3570 Alicycliphilus denitrificans BC hypothetical protein YP_004128174.1 3720896 D 596153 CDS YP_004128175.1 319764238 10105645 3721108..3721410 1 NC_014910.1 KEGG: tbi:Tbis_2085 LuxR family ATP-dependent transcriptional regulator; hypothetical protein 3721410 10105645 Alide_3571 Alicycliphilus denitrificans BC hypothetical protein YP_004128175.1 3721108 D 596153 CDS YP_004128176.1 319764239 10105646 complement(3721446..3721901) 1 NC_014910.1 KEGG: xfn:XfasM23_1198 hypothetical protein; hypothetical protein 3721901 10105646 Alide_3572 Alicycliphilus denitrificans BC hypothetical protein YP_004128176.1 3721446 R 596153 CDS YP_004128177.1 319764240 10105647 3722159..3722584 1 NC_014910.1 KEGG: cyc:PCC7424_3069 transcriptional regulator, XRE family; hypothetical protein 3722584 10105647 Alide_3573 Alicycliphilus denitrificans BC hypothetical protein YP_004128177.1 3722159 D 596153 CDS YP_004128178.1 319764241 10105648 3722627..3723169 1 NC_014910.1 KEGG: mag:amb1496 hypothetical protein; hypothetical protein 3723169 10105648 Alide_3574 Alicycliphilus denitrificans BC hypothetical protein YP_004128178.1 3722627 D 596153 CDS YP_004128179.1 319764242 10105649 3723209..3723754 1 NC_014910.1 KEGG: rpi:Rpic_2348 hypothetical protein; hypothetical protein 3723754 10105649 Alide_3575 Alicycliphilus denitrificans BC hypothetical protein YP_004128179.1 3723209 D 596153 CDS YP_004128180.1 319764243 10105650 3723751..3723954 1 NC_014910.1 KEGG: fal:FRAAL1878 hypothetical protein; hypothetical protein 3723954 10105650 Alide_3576 Alicycliphilus denitrificans BC hypothetical protein YP_004128180.1 3723751 D 596153 CDS YP_004128181.1 319764244 10105651 3723951..3724181 1 NC_014910.1 KEGG: msm:MSMEG_0978 aminotransferase, class V superfamily protein; hypothetical protein 3724181 10105651 Alide_3577 Alicycliphilus denitrificans BC hypothetical protein YP_004128181.1 3723951 D 596153 CDS YP_004128182.1 319764245 10105652 3724226..3724579 1 NC_014910.1 KEGG: ypy:YPK_1206 hypothetical protein; hypothetical protein 3724579 10105652 Alide_3578 Alicycliphilus denitrificans BC hypothetical protein YP_004128182.1 3724226 D 596153 CDS YP_004128183.1 319764246 10105653 3724576..3725442 1 NC_014910.1 PFAM: Protein of unknown function DUF2303; KEGG: nhl:Nhal_0958 hypothetical protein; hypothetical protein 3725442 10105653 Alide_3579 Alicycliphilus denitrificans BC hypothetical protein YP_004128183.1 3724576 D 596153 CDS YP_004128184.1 319764247 10105654 3725483..3725842 1 NC_014910.1 KEGG: pna:Pnap_2272 hypothetical protein; hypothetical protein 3725842 10105654 Alide_3580 Alicycliphilus denitrificans BC hypothetical protein YP_004128184.1 3725483 D 596153 CDS YP_004128185.1 319764248 10105655 3725868..3726272 1 NC_014910.1 KEGG: nhl:Nhal_0985 hypothetical protein; hypothetical protein 3726272 10105655 Alide_3581 Alicycliphilus denitrificans BC hypothetical protein YP_004128185.1 3725868 D 596153 CDS YP_004128186.1 319764249 10105656 3726269..3727264 1 NC_014910.1 KEGG: met:M446_4802 helicase domain-containing protein; hypothetical protein 3727264 10105656 Alide_3582 Alicycliphilus denitrificans BC hypothetical protein YP_004128186.1 3726269 D 596153 CDS YP_004128187.1 319764250 10105657 3727261..3727890 1 NC_014910.1 KEGG: aav:Aave_1670 hypothetical protein; hypothetical protein 3727890 10105657 Alide_3583 Alicycliphilus denitrificans BC hypothetical protein YP_004128187.1 3727261 D 596153 CDS YP_004128188.1 319764251 10105658 3727887..3728432 1 NC_014910.1 KEGG: pna:Pnap_3326 hypothetical protein; hypothetical protein 3728432 10105658 Alide_3584 Alicycliphilus denitrificans BC hypothetical protein YP_004128188.1 3727887 D 596153 CDS YP_004128189.1 319764252 10105659 3728445..3729059 1 NC_014910.1 KEGG: rpi:Rpic_2348 hypothetical protein; hypothetical protein 3729059 10105659 Alide_3585 Alicycliphilus denitrificans BC hypothetical protein YP_004128189.1 3728445 D 596153 CDS YP_004128190.1 319764253 10105660 3729113..3729505 1 NC_014910.1 KEGG: bgl:bglu_1g15260 hypothetical protein; hypothetical protein 3729505 10105660 Alide_3586 Alicycliphilus denitrificans BC hypothetical protein YP_004128190.1 3729113 D 596153 CDS YP_004128191.1 319764254 10105661 3729772..3730908 1 NC_014910.1 KEGG: slt:Slit_0203 retron-type reverse transcriptase; retron-type reverse transcriptase 3730908 10105661 Alide_3587 Alicycliphilus denitrificans BC retron-type reverse transcriptase YP_004128191.1 3729772 D 596153 CDS YP_004128192.1 319764255 10105662 3730905..3731951 1 NC_014910.1 PFAM: Gp37Gp68 family protein; KEGG: bpm:BURPS1710b_1658 GP38; gp37gp68 family protein 3731951 10105662 Alide_3588 Alicycliphilus denitrificans BC gp37gp68 family protein YP_004128192.1 3730905 D 596153 CDS YP_004128193.1 319764256 10105663 3731948..3732280 1 NC_014910.1 KEGG: ppp:PHYPADRAFT_20818 hypothetical protein; hypothetical protein 3732280 10105663 Alide_3589 Alicycliphilus denitrificans BC hypothetical protein YP_004128193.1 3731948 D 596153 CDS YP_004128194.1 319764257 10105664 3732288..3734348 1 NC_014910.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: aav:Aave_1680 C-5 cytosine-specific DNA methylase; c-5 cytosine-specific DNA methylase 3734348 10105664 Alide_3590 Alicycliphilus denitrificans BC c-5 cytosine-specific DNA methylase YP_004128194.1 3732288 D 596153 CDS YP_004128195.1 319764258 10105665 3734345..3734464 1 NC_014910.1 hypothetical protein 3734464 10105665 Alide_3591 Alicycliphilus denitrificans BC hypothetical protein YP_004128195.1 3734345 D 596153 CDS YP_004128196.1 319764259 10105666 3734474..3734728 1 NC_014910.1 KEGG: bpy:Bphyt_1156 hypothetical protein; hypothetical protein 3734728 10105666 Alide_3592 Alicycliphilus denitrificans BC hypothetical protein YP_004128196.1 3734474 D 596153 CDS YP_004128197.1 319764260 10105667 complement(3734725..3735777) 1 NC_014910.1 PFAM: integrase family protein; KEGG: eba:ebA29 phage integrase; integrase family protein 3735777 10105667 Alide_3593 Alicycliphilus denitrificans BC integrase family protein YP_004128197.1 3734725 R 596153 CDS YP_004128198.1 319764261 10105670 3737968..3738732 1 NC_014910.1 KEGG: ngr:NAEGRDRAFT_75750 hypothetical protein; hypothetical protein 3738732 10105670 Alide_3595 Alicycliphilus denitrificans BC hypothetical protein YP_004128198.1 3737968 D 596153 CDS YP_004128199.1 319764262 10105671 complement(3738758..3739435) 1 NC_014910.1 KEGG: dsy:DSY3857 hypothetical protein; hypothetical protein 3739435 10105671 Alide_3596 Alicycliphilus denitrificans BC hypothetical protein YP_004128199.1 3738758 R 596153 CDS YP_004128200.1 319764263 10105672 3739847..3739984 1 NC_014910.1 hypothetical protein 3739984 10105672 Alide_3597 Alicycliphilus denitrificans BC hypothetical protein YP_004128200.1 3739847 D 596153 CDS YP_004128201.1 319764264 10105673 3740148..3740423 1 NC_014910.1 KEGG: rbe:RBE_0670 hypothetical protein; hypothetical protein 3740423 10105673 Alide_3598 Alicycliphilus denitrificans BC hypothetical protein YP_004128201.1 3740148 D 596153 CDS YP_004128202.1 319764265 10105674 3740553..3740909 1 NC_014910.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: bte:BTH_I2733 helix-turn-helix domain-containing protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 3740909 10105674 Alide_3599 Alicycliphilus denitrificans BC helix-turn-helix domain-containing protein YP_004128202.1 3740553 D 596153 CDS YP_004128203.1 319764266 10105675 complement(3741094..3741276) 1 NC_014910.1 KEGG: cpi:Cpin_2216 hypothetical protein; hypothetical protein 3741276 10105675 Alide_3600 Alicycliphilus denitrificans BC hypothetical protein YP_004128203.1 3741094 R 596153 CDS YP_004128204.1 319764267 10105676 3742693..3744111 1 NC_014910.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: rpi:Rpic_0452 relaxase/mobilization nuclease family protein; relaxase/mobilization nuclease family protein 3744111 10105676 Alide_3601 Alicycliphilus denitrificans BC relaxase/mobilization nuclease family protein YP_004128204.1 3742693 D 596153 CDS YP_004128205.1 319764268 10105677 3744160..3744522 1 NC_014910.1 manually curated; KEGG: bid:Bind_0669 hypothetical protein; hypothetical protein 3744522 10105677 Alide_3602 Alicycliphilus denitrificans BC hypothetical protein YP_004128205.1 3744160 D 596153 CDS YP_004128206.1 319764269 10105678 complement(3744546..3745481) 1 NC_014910.1 KEGG: sit:TM1040_1587 DNA adenine methylase Dam; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 3745481 10105678 Alide_3603 Alicycliphilus denitrificans BC DNA adenine methylase YP_004128206.1 3744546 R 596153 CDS YP_004128207.1 319764270 10105679 3745535..3746362 1 NC_014910.1 KEGG: mgm:Mmc1_1280 hypothetical protein; hypothetical protein 3746362 10105679 Alide_3604 Alicycliphilus denitrificans BC hypothetical protein YP_004128207.1 3745535 D 596153 CDS YP_004128208.1 319764271 10105680 complement(3746391..3747548) 1 NC_014910.1 PFAM: integrase family protein; KEGG: mms:mma_2533 phage integrase/recombinase; integrase family protein 3747548 10105680 Alide_3605 Alicycliphilus denitrificans BC integrase family protein YP_004128208.1 3746391 R 596153 CDS YP_004128209.1 319764272 10105681 complement(3747751..3748650) 1 NC_014910.1 KEGG: avn:Avin_00950 cytochrome oxidase assembly protein; cytochrome oxidase assembly protein 3748650 10105681 Alide_3606 Alicycliphilus denitrificans BC cytochrome oxidase assembly protein YP_004128209.1 3747751 R 596153 CDS YP_004128210.1 319764273 10105682 3748917..3749069 1 NC_014910.1 KEGG: mag:amb2220 hypothetical protein; hypothetical protein 3749069 10105682 Alide_3607 Alicycliphilus denitrificans BC hypothetical protein YP_004128210.1 3748917 D 596153 CDS YP_004128211.1 319764274 10105683 3749083..3749622 1 NC_014910.1 PFAM: cytochrome c oxidase subunit II; KEGG: app:CAP2UW1_1791 cytochrome c oxidase subunit II; cytochrome c oxidase subunit ii 3749622 10105683 Alide_3608 Alicycliphilus denitrificans BC cytochrome c oxidase subunit ii YP_004128211.1 3749083 D 596153 CDS YP_004128212.1 319764275 10105684 3749636..3751336 1 NC_014910.1 KEGG: app:CAP2UW1_1790 cytochrome c oxidase subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome-c oxidase 3751336 10105684 Alide_3609 Alicycliphilus denitrificans BC cytochrome-c oxidase YP_004128212.1 3749636 D 596153 CDS YP_004128213.1 319764276 10105685 3751354..3752256 1 NC_014910.1 KEGG: app:CAP2UW1_1789 protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 3752256 10105685 Alide_3610 Alicycliphilus denitrificans BC protoheme IX farnesyltransferase YP_004128213.1 3751354 D 596153 CDS YP_004128214.1 319764277 10105686 3752274..3753131 1 NC_014910.1 PFAM: Redoxin domain protein; KEGG: app:CAP2UW1_1788 electron transport protein SCO1/SenC; redoxin domain-containing protein 3753131 10105686 Alide_3611 Alicycliphilus denitrificans BC redoxin domain-containing protein YP_004128214.1 3752274 D 596153 CDS YP_004128215.1 319764278 10105687 3753146..3754729 1 NC_014910.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: app:CAP2UW1_1327 methyl-viologen-reducing hydrogenase delta subunit; methyl-viologen-reducing hydrogenase subunit delta 3754729 10105687 Alide_3612 Alicycliphilus denitrificans BC methyl-viologen-reducing hydrogenase subunit delta YP_004128215.1 3753146 D 596153 CDS YP_004128216.1 319764279 10105688 3754726..3755229 1 NC_014910.1 KEGG: app:CAP2UW1_1325 hypothetical protein; hypothetical protein 3755229 10105688 Alide_3613 Alicycliphilus denitrificans BC hypothetical protein YP_004128216.1 3754726 D 596153 CDS YP_004128217.1 319764280 10105689 3755226..3756674 1 NC_014910.1 KEGG: app:CAP2UW1_3424 cytochrome c oxidase, subunit I; cytochrome c oxidase, subunit i 3756674 10105689 Alide_3614 Alicycliphilus denitrificans BC cytochrome c oxidase, subunit i YP_004128217.1 3755226 D 596153 CDS YP_004128218.1 319764281 10105690 3756671..3758599 1 NC_014910.1 PFAM: Oxidoreductase FAD-binding domain protein; ferredoxin; Cytochrome b/b6 domain; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: app:CAP2UW1_1324 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding domain-containing protein 3758599 10105690 Alide_3615 Alicycliphilus denitrificans BC oxidoreductase FAD-binding domain-containing protein YP_004128218.1 3756671 D 596153 CDS YP_004128219.1 319764282 10105691 complement(3758615..3760018) 1 NC_014910.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: ajs:Ajs_3563 cardiolipin synthetase 2; phospholipase d/transphosphatidylase 3760018 10105691 Alide_3616 Alicycliphilus denitrificans BC phospholipase d/transphosphatidylase YP_004128219.1 3758615 R 596153 CDS YP_004128220.1 319764283 10105692 complement(3760015..3761391) 1 NC_014910.1 KEGG: aav:Aave_3963 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 3761391 10105692 Alide_3617 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004128220.1 3760015 R 596153 CDS YP_004128221.1 319764284 10105693 complement(3761388..3762056) 1 NC_014910.1 KEGG: vap:Vapar_2384 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 3762056 10105693 Alide_3618 Alicycliphilus denitrificans BC response regulator receiver YP_004128221.1 3761388 R 596153 CDS YP_004128222.1 319764285 10105694 complement(3762085..3763593) 1 NC_014910.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: aav:Aave_3965 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 3763593 10105694 Alide_3619 Alicycliphilus denitrificans BC protease Do YP_004128222.1 3762085 R 596153 CDS YP_004128223.1 319764286 10105695 complement(3763660..3764010) 1 NC_014910.1 KEGG: ajs:Ajs_3564 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase 3764010 10105695 Alide_3620 Alicycliphilus denitrificans BC arsenate reductase YP_004128223.1 3763660 R 596153 CDS YP_004128224.1 319764287 10105696 complement(3764026..3765687) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3565 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3765687 10105696 Alide_3621 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004128224.1 3764026 R 596153 CDS YP_004128225.1 319764288 10105697 3765759..3766823 1 NC_014910.1 KEGG: ajs:Ajs_3566 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 3766823 10105697 Alide_3622 Alicycliphilus denitrificans BC ABC transporter YP_004128225.1 3765759 D 596153 CDS YP_004128226.1 319764289 10105698 complement(3766826..3767566) 1 NC_014910.1 KEGG: dia:Dtpsy_2891 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 3767566 10105698 Alide_3623 Alicycliphilus denitrificans BC phospholipid/glycerol acyltransferase YP_004128226.1 3766826 R 596153 CDS YP_004128227.1 319764290 10105699 complement(3767577..3768872) 1 NC_014910.1 PFAM: amidohydrolase; KEGG: dia:Dtpsy_2892 amidohydrolase; amidohydrolase 3768872 10105699 Alide_3624 Alicycliphilus denitrificans BC amidohydrolase YP_004128227.1 3767577 R 596153 CDS YP_004128228.1 319764291 10105700 complement(3768940..3769902) 1 NC_014910.1 KEGG: dia:Dtpsy_2893 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate carbamoyltransferase 3769902 10105700 Alide_3625 Alicycliphilus denitrificans BC aspartate carbamoyltransferase YP_004128228.1 3768940 R 596153 CDS YP_004128229.1 319764292 10105701 complement(3769905..3770441) 1 NC_014910.1 KEGG: dia:Dtpsy_2894 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 3770441 10105701 Alide_3626 Alicycliphilus denitrificans BC uracil phosphoribosyltransferase YP_004128229.1 3769905 R 596153 CDS YP_004128230.1 319764293 10105702 complement(3770438..3770851) 1 NC_014910.1 KEGG: dia:Dtpsy_2895 Holliday junction resolvase-like protein; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; holliday junction resolvase yqgf 3770851 10105702 Alide_3627 Alicycliphilus denitrificans BC holliday junction resolvase yqgf YP_004128230.1 3770438 R 596153 CDS YP_004128231.1 319764294 10105703 complement(3770848..3771474) 1 NC_014910.1 KEGG: dia:Dtpsy_2896 protein of unknown function DUF179; manually curated; PFAM: protein of unknown function DUF179; hypothetical protein 3771474 10105703 Alide_3628 Alicycliphilus denitrificans BC hypothetical protein YP_004128231.1 3770848 R 596153 CDS YP_004128232.1 319764295 10105704 complement(3771563..3777406) 1 NC_014910.1 KEGG: dia:Dtpsy_2897 CheA signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein; response regulator receiver 3777406 10105704 Alide_3629 Alicycliphilus denitrificans BC response regulator receiver YP_004128232.1 3771563 R 596153 CDS YP_004128233.1 319764296 10105705 complement(3777450..3779714) 1 NC_014910.1 KEGG: dia:Dtpsy_2898 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; chemotaxis sensory transducer protein 3779714 10105705 Alide_3630 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004128233.1 3777450 R 596153 CDS YP_004128234.1 319764297 10105706 complement(3779735..3780262) 1 NC_014910.1 KEGG: ajs:Ajs_3576 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; chemotaxis protein CheW 3780262 10105706 Alide_3631 Alicycliphilus denitrificans BC chemotaxis protein CheW YP_004128234.1 3779735 R 596153 CDS YP_004128235.1 319764298 10105707 complement(3780279..3780644) 1 NC_014910.1 KEGG: dia:Dtpsy_2900 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 3780644 10105707 Alide_3632 Alicycliphilus denitrificans BC response regulator receiver YP_004128235.1 3780279 R 596153 CDS YP_004128236.1 319764299 10105708 complement(3780644..3781048) 1 NC_014910.1 KEGG: aav:Aave_0901 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 3781048 10105708 Alide_3633 Alicycliphilus denitrificans BC response regulator receiver YP_004128236.1 3780644 R 596153 CDS YP_004128237.1 319764300 10105709 complement(3781100..3781252) 1 NC_014910.1 KEGG: dia:Dtpsy_2902 rubredoxin-type Fe(Cys)4 protein; manually curated; PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type fe(cys)4 protein 3781252 10105709 Alide_3634 Alicycliphilus denitrificans BC rubredoxin-type fe(cys)4 protein YP_004128237.1 3781100 R 596153 CDS YP_004128238.1 319764301 10105710 3781413..3782315 1 NC_014910.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dia:Dtpsy_2903 phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase type-1 3782315 10105710 Alide_3635 Alicycliphilus denitrificans BC phosphomethylpyrimidine kinase type-1 YP_004128238.1 3781413 D 596153 CDS YP_004128239.1 319764302 10105711 3782299..3783603 1 NC_014910.1 KEGG: dia:Dtpsy_2904 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; glutamate-1-semialdehyde-2,1-aminomutase 3783603 10105711 Alide_3636 Alicycliphilus denitrificans BC glutamate-1-semialdehyde-2,1-aminomutase YP_004128239.1 3782299 D 596153 CDS YP_004128240.1 319764303 10105712 complement(3783705..3785303) 1 NC_014910.1 SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: dia:Dtpsy_2907 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase 3785303 10105712 Alide_3637 Alicycliphilus denitrificans BC phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase YP_004128240.1 3783705 R 596153 CDS YP_004128241.1 319764304 10105713 complement(3785385..3785621) 1 NC_014910.1 PFAM: helix-turn-helix Fis-type; KEGG: dia:Dtpsy_2908 transcriptional regulator, fis family; helix-turn-helix fis-type 3785621 10105713 Alide_3638 Alicycliphilus denitrificans BC helix-turn-helix fis-type YP_004128241.1 3785385 R 596153 CDS YP_004128242.1 319764305 10105714 complement(3785599..3786657) 1 NC_014910.1 KEGG: dia:Dtpsy_2909 TIM-barrel protein, nifR3 family; TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; tim-barrel protein, nifr3 family 3786657 10105714 Alide_3639 Alicycliphilus denitrificans BC tim-barrel protein, nifr3 family YP_004128242.1 3785599 R 596153 CDS YP_004128243.1 319764306 10105715 3786806..3787315 1 NC_014910.1 KEGG: dia:Dtpsy_2910 hypothetical protein; hypothetical protein 3787315 10105715 Alide_3640 Alicycliphilus denitrificans BC hypothetical protein YP_004128243.1 3786806 D 596153 CDS YP_004128244.1 319764307 10105716 complement(3787322..3788296) 1 NC_014910.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dia:Dtpsy_2911 transcriptional regulator, LysR family; LysR family transcriptional regulator 3788296 10105716 Alide_3641 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128244.1 3787322 R 596153 CDS YP_004128245.1 319764308 10105717 3788492..3789499 1 NC_014910.1 KEGG: dia:Dtpsy_2912 hypothetical protein; hypothetical protein 3789499 10105717 Alide_3642 Alicycliphilus denitrificans BC hypothetical protein YP_004128245.1 3788492 D 596153 CDS YP_004128246.1 319764309 10105718 3789513..3790958 1 NC_014910.1 KEGG: dia:Dtpsy_2913 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase dimerisation domain protein; amidohydrolase 3790958 10105718 Alide_3643 Alicycliphilus denitrificans BC amidohydrolase YP_004128246.1 3789513 D 596153 CDS YP_004128247.1 319764310 10105719 complement(3791014..3792525) 1 NC_014910.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: dia:Dtpsy_2745 protein of unknown function DUF112 transmembrane; hypothetical protein 3792525 10105719 Alide_3644 Alicycliphilus denitrificans BC hypothetical protein YP_004128247.1 3791014 R 596153 CDS YP_004128248.1 319764311 10105720 complement(3792559..3793047) 1 NC_014910.1 KEGG: vap:Vapar_0318 protein of unknown function DUF1468; hypothetical protein 3793047 10105720 Alide_3645 Alicycliphilus denitrificans BC hypothetical protein YP_004128248.1 3792559 R 596153 CDS YP_004128249.1 319764312 10105721 complement(3793243..3794625) 1 NC_014910.1 KEGG: mms:mma_0288 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 3794625 10105721 Alide_3646 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004128249.1 3793243 R 596153 CDS YP_004128250.1 319764313 10105722 complement(3794622..3795314) 1 NC_014910.1 KEGG: bpt:Bpet1596 two-component transcriptional regulator; PFAM: transcriptional regulator domain-containing protein; response regulator receiver; SMART: response regulator receiver; transcriptional regulator domain-containing protein 3795314 10105722 Alide_3647 Alicycliphilus denitrificans BC transcriptional regulator domain-containing protein YP_004128250.1 3794622 R 596153 CDS YP_004128251.1 319764314 10105723 complement(3795324..3796418) 1 NC_014910.1 KEGG: dia:Dtpsy_2928 GTP-binding protein YchF; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; GTP-binding protein YchF 3796418 10105723 Alide_3648 Alicycliphilus denitrificans BC GTP-binding protein YchF YP_004128251.1 3795324 R 596153 CDS YP_004128252.1 319764315 10105724 3796560..3797690 1 NC_014910.1 KEGG: ajs:Ajs_3620 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase; ubiquinone biosynthesis hydroxylase, ubih/ubif/visc/coq6 family 3797690 10105724 Alide_3649 Alicycliphilus denitrificans BC ubiquinone biosynthesis hydroxylase, ubih/ubif/visc/coq6 family YP_004128252.1 3796560 D 596153 CDS YP_004128253.1 319764316 10105725 3797734..3798453 1 NC_014910.1 PFAM: Disulphide bond isomerase, DsbC/G-like; KEGG: ajs:Ajs_3621 thiol:disulfide interchange protein DsbC; disulfide bond isomerase, dsbc/g-like protein 3798453 10105725 Alide_3650 Alicycliphilus denitrificans BC disulfide bond isomerase, dsbc/g-like protein YP_004128253.1 3797734 D 596153 CDS YP_004128254.1 319764317 10105726 3798598..3800379 1 NC_014910.1 PFAM: peptidase M61 domain protein; KEGG: ajs:Ajs_3622 peptidase M61 domain-containing protein; peptidase m61 domain-containing protein 3800379 10105726 Alide_3651 Alicycliphilus denitrificans BC peptidase m61 domain-containing protein YP_004128254.1 3798598 D 596153 CDS YP_004128255.1 319764318 10105727 3800437..3801216 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3623 short chain enoyl-CoA hydratase; enoyl-CoA hydratase 3801216 10105727 Alide_3652 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004128255.1 3800437 D 596153 CDS YP_004128256.1 319764319 10105729 3801400..3801801 1 NC_014910.1 KEGG: aav:Aave_0876 hypothetical protein; hypothetical protein 3801801 10105729 Alide_3653 Alicycliphilus denitrificans BC hypothetical protein YP_004128256.1 3801400 D 596153 CDS YP_004128257.1 319764320 10105730 3801869..3803218 1 NC_014910.1 TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: dia:Dtpsy_2935 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)a37 thiotransferase enzyme miab 3803218 10105730 Alide_3654 Alicycliphilus denitrificans BC tRNA-i(6)a37 thiotransferase enzyme miab YP_004128257.1 3801869 D 596153 CDS YP_004128258.1 319764321 10105731 complement(3803263..3804642) 1 NC_014910.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; KEGG: ajs:Ajs_3626 signal recognition particle subunit FFH/SRP54 (SRP54); SMART: AAA ATPase; signal recognition particle protein 3804642 10105731 Alide_3655 Alicycliphilus denitrificans BC signal recognition particle protein YP_004128258.1 3803263 R 596153 CDS YP_004128259.1 319764322 10105732 3804732..3805529 1 NC_014910.1 PFAM: cytochrome c assembly protein; KEGG: dia:Dtpsy_2937 cytochrome c assembly protein; cytochrome c assembly protein 3805529 10105732 Alide_3656 Alicycliphilus denitrificans BC cytochrome c assembly protein YP_004128259.1 3804732 D 596153 CDS YP_004128260.1 319764323 10105733 3805526..3805753 1 NC_014910.1 KEGG: dia:Dtpsy_2938 hypothetical protein; hypothetical protein 3805753 10105733 Alide_3657 Alicycliphilus denitrificans BC hypothetical protein YP_004128260.1 3805526 D 596153 CDS YP_004128261.1 319764324 10105734 3805766..3807469 1 NC_014910.1 KEGG: dia:Dtpsy_2939 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 3807469 10105734 Alide_3658 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004128261.1 3805766 D 596153 CDS YP_004128262.1 319764325 10105735 3807486..3808976 1 NC_014910.1 KEGG: dia:Dtpsy_2940 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; sigma-54 factor interaction domain-containing protein 3808976 10105735 Alide_3659 Alicycliphilus denitrificans BC sigma-54 factor interaction domain-containing protein YP_004128262.1 3807486 D 596153 CDS YP_004128263.1 319764326 10105736 3808960..3809541 1 NC_014910.1 KEGG: dia:Dtpsy_2941 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; N-acetylmuramoyl-L-alanine amidase 3809541 10105736 Alide_3660 Alicycliphilus denitrificans BC N-acetylmuramoyl-L-alanine amidase YP_004128263.1 3808960 D 596153 CDS YP_004128264.1 319764327 10105737 3809826..3812738 1 NC_014910.1 KEGG: ajs:Ajs_3632 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ATP-cone domain protein; ribonucleoside-diphosphate reductase subunit alpha 3812738 10105737 Alide_3661 Alicycliphilus denitrificans BC ribonucleoside-diphosphate reductase subunit alpha YP_004128264.1 3809826 D 596153 CDS YP_004128265.1 319764328 10105738 3812877..3814067 1 NC_014910.1 KEGG: dia:Dtpsy_2943 ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase; ribonucleoside-diphosphate reductase 3814067 10105738 Alide_3662 Alicycliphilus denitrificans BC ribonucleoside-diphosphate reductase YP_004128265.1 3812877 D 596153 CDS YP_004128266.1 319764329 10105739 3814247..3814795 1 NC_014910.1 KEGG: dia:Dtpsy_2944 histone protein; histone protein 3814795 10105739 Alide_3663 Alicycliphilus denitrificans BC histone protein YP_004128266.1 3814247 D 596153 CDS YP_004128267.1 319764330 10105740 complement(3814878..3815774) 1 NC_014910.1 PFAM: PfkB domain protein; KEGG: dia:Dtpsy_2945 PfkB domain protein; pfkb domain-containing protein 3815774 10105740 Alide_3664 Alicycliphilus denitrificans BC pfkb domain-containing protein YP_004128267.1 3814878 R 596153 CDS YP_004128268.1 319764331 10105741 complement(3815809..3816963) 1 NC_014910.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: dia:Dtpsy_2946 MJ0042 family finger-like protein; mj0042 family finger-like protein 3816963 10105741 Alide_3665 Alicycliphilus denitrificans BC mj0042 family finger-like protein YP_004128268.1 3815809 R 596153 CDS YP_004128269.1 319764332 10105742 complement(3817017..3817913) 1 NC_014910.1 KEGG: ajs:Ajs_3637 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; 50S ribosomal protein L11 methyltransferase 3817913 10105742 Alide_3666 Alicycliphilus denitrificans BC 50S ribosomal protein L11 methyltransferase YP_004128269.1 3817017 R 596153 CDS YP_004128270.1 319764333 10105743 complement(3818006..3819355) 1 NC_014910.1 KEGG: ajs:Ajs_3638 acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; acetyl-CoA carboxylase, biotin carboxylase 3819355 10105743 Alide_3667 Alicycliphilus denitrificans BC acetyl-CoA carboxylase, biotin carboxylase YP_004128270.1 3818006 R 596153 CDS YP_004128271.1 319764334 10105744 complement(3819371..3819829) 1 NC_014910.1 KEGG: dia:Dtpsy_2949 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3819829 10105744 Alide_3668 Alicycliphilus denitrificans BC acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_004128271.1 3819371 R 596153 CDS YP_004128272.1 319764335 10105745 complement(3819940..3820515) 1 NC_014910.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dia:Dtpsy_2950 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 3820515 10105745 Alide_3669 Alicycliphilus denitrificans BC alkyl hydroperoxide reductase YP_004128272.1 3819940 R 596153 CDS YP_004128273.1 319764336 10105746 complement(3820512..3821126) 1 NC_014910.1 KEGG: ajs:Ajs_3641 hypothetical protein; hypothetical protein 3821126 10105746 Alide_3670 Alicycliphilus denitrificans BC hypothetical protein YP_004128273.1 3820512 R 596153 CDS YP_004128274.1 319764337 10105747 3821242..3822633 1 NC_014910.1 manually curated; TIGRFAM: UDP-N-acetylmuramate; KEGG: ajs:Ajs_3642 UDP-N-acetylmuramate; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; udp-n-acetylmuramate 3822633 10105747 Alide_3671 Alicycliphilus denitrificans BC udp-n-acetylmuramate YP_004128274.1 3821242 D 596153 CDS YP_004128275.1 319764338 10105748 complement(3822681..3822992) 1 NC_014910.1 KEGG: dia:Dtpsy_2953 hypothetical protein; hypothetical protein 3822992 10105748 Alide_3672 Alicycliphilus denitrificans BC hypothetical protein YP_004128275.1 3822681 R 596153 CDS YP_004128276.1 319764339 10105749 complement(3823078..3824196) 1 NC_014910.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: dia:Dtpsy_2954 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 3824196 10105749 Alide_3673 Alicycliphilus denitrificans BC phospho-2-dehydro-3-deoxyheptonate aldolase YP_004128276.1 3823078 R 596153 CDS YP_004128277.1 319764340 10105750 complement(3824437..3825897) 1 NC_014910.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: dia:Dtpsy_2956 peptidase U62 modulator of DNA gyrase; peptidase u62 modulator of DNA gyrase 3825897 10105750 Alide_3674 Alicycliphilus denitrificans BC peptidase u62 modulator of DNA gyrase YP_004128277.1 3824437 R 596153 CDS YP_004128278.1 319764341 10105751 complement(3825936..3827117) 1 NC_014910.1 KEGG: dia:Dtpsy_2957 rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; rod shape-determining protein roda 3827117 10105751 Alide_3675 Alicycliphilus denitrificans BC rod shape-determining protein roda YP_004128278.1 3825936 R 596153 CDS YP_004128279.1 319764342 10105752 3827153..3827740 1 NC_014910.1 PFAM: protein of unknown function UPF0227; KEGG: ajs:Ajs_3649 hypothetical protein; hypothetical protein 3827740 10105752 Alide_3676 Alicycliphilus denitrificans BC hypothetical protein YP_004128279.1 3827153 D 596153 CDS YP_004128280.1 319764343 10105753 complement(3827843..3829402) 1 NC_014910.1 PFAM: O-antigen polymerase; KEGG: dia:Dtpsy_2960 O-antigen polymerase; o-antigen polymerase 3829402 10105753 Alide_3677 Alicycliphilus denitrificans BC o-antigen polymerase YP_004128280.1 3827843 R 596153 CDS YP_004128281.1 319764344 10105754 complement(3829552..3829965) 1 NC_014910.1 PFAM: cytochrome c class I; KEGG: dia:Dtpsy_2961 cytochrome c class I; cytochrome c class i 3829965 10105754 Alide_3678 Alicycliphilus denitrificans BC cytochrome c class i YP_004128281.1 3829552 R 596153 CDS YP_004128282.1 319764345 10105755 complement(3829962..3830543) 1 NC_014910.1 KEGG: ajs:Ajs_3652 hypothetical protein; hypothetical protein 3830543 10105755 Alide_3679 Alicycliphilus denitrificans BC hypothetical protein YP_004128282.1 3829962 R 596153 CDS YP_004128283.1 319764346 10105756 complement(3830632..3831351) 1 NC_014910.1 KEGG: dia:Dtpsy_2963 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 family RNA polymerase sigma factor 3831351 10105756 Alide_3680 Alicycliphilus denitrificans BC sigma-70 family RNA polymerase sigma factor YP_004128283.1 3830632 R 596153 CDS YP_004128284.1 319764347 10105757 3831475..3833553 1 NC_014910.1 PFAM: ribonuclease II; KEGG: ajs:Ajs_3654 ribonuclease II; ribonuclease ii 3833553 10105757 Alide_3681 Alicycliphilus denitrificans BC ribonuclease ii YP_004128284.1 3831475 D 596153 CDS YP_004128285.1 319764348 10105758 3833563..3834423 1 NC_014910.1 TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein; tonb family protein 3834423 10105758 Alide_3682 Alicycliphilus denitrificans BC tonb family protein YP_004128285.1 3833563 D 596153 CDS YP_004128286.1 319764349 10105759 3834430..3835278 1 NC_014910.1 KEGG: ajs:Ajs_3656 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; shikimate 5-dehydrogenase 3835278 10105759 Alide_3683 Alicycliphilus denitrificans BC shikimate 5-dehydrogenase YP_004128286.1 3834430 D 596153 CDS YP_004128287.1 319764350 10105760 3835292..3836008 1 NC_014910.1 KEGG: ajs:Ajs_3657 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; monofunctional biosynthetic peptidoglycan transglycosylase 3836008 10105760 Alide_3684 Alicycliphilus denitrificans BC monofunctional biosynthetic peptidoglycan transglycosylase YP_004128287.1 3835292 D 596153 CDS YP_004128288.1 319764351 10105761 3836032..3836358 1 NC_014910.1 KEGG: rso:RSc1775 hemagglutinin-related protein; hemagglutinin-like protein 3836358 10105761 Alide_3685 Alicycliphilus denitrificans BC hemagglutinin-like protein YP_004128288.1 3836032 D 596153 CDS YP_004128289.1 319764352 10105762 complement(3836512..3837324) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_3784 integrase catalytic subunit; integrase catalytic region protein 3837324 10105762 Alide_3686 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004128289.1 3836512 R 596153 CDS YP_004128290.1 319764353 10105763 complement(3837342..3837608) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911; transposase is3/is911 family protein 3837608 10105763 Alide_3687 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004128290.1 3837342 R 596153 CDS YP_004128291.1 319764354 10105764 3837961..3838509 1 NC_014910.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: dia:Dtpsy_2968 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease ruvc 3838509 10105764 Alide_3688 Alicycliphilus denitrificans BC crossover junction endodeoxyribonuclease ruvc YP_004128291.1 3837961 D 596153 CDS YP_004128292.1 319764355 10105765 complement(3838512..3839210) 1 NC_014910.1 PFAM: helix-turn-helix HxlR type; KEGG: mlo:mlr1855 hypothetical protein; helix-turn-helix hxlr type 3839210 10105765 Alide_3689 Alicycliphilus denitrificans BC helix-turn-helix hxlr type YP_004128292.1 3838512 R 596153 CDS YP_004128293.1 319764356 10105766 3839638..3840459 1 NC_014910.1 PFAM: Methyltransferase type 11; KEGG: acp:A2cp1_1683 methyltransferase type 11; type 11 methyltransferase 3840459 10105766 Alide_3690 Alicycliphilus denitrificans BC type 11 methyltransferase YP_004128293.1 3839638 D 596153 CDS YP_004128294.1 319764357 10105767 complement(3840471..3842318) 1 NC_014910.1 KEGG: dia:Dtpsy_2971 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; thiamine biosynthesis protein thic 3842318 10105767 Alide_3691 Alicycliphilus denitrificans BC thiamine biosynthesis protein thic YP_004128294.1 3840471 R 596153 CDS YP_004128295.1 319764358 10105768 complement(3842555..3842731) 1 NC_014910.1 KEGG: dia:Dtpsy_2972 hypothetical protein; hypothetical protein 3842731 10105768 Alide_3692 Alicycliphilus denitrificans BC hypothetical protein YP_004128295.1 3842555 R 596153 CDS YP_004128296.1 319764359 10105769 complement(3842741..3843664) 1 NC_014910.1 KEGG: dia:Dtpsy_2973 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; udp-3-0-acyl n-acetylglucosamine deacetylase 3843664 10105769 Alide_3693 Alicycliphilus denitrificans BC udp-3-0-acyl n-acetylglucosamine deacetylase YP_004128296.1 3842741 R 596153 CDS YP_004128297.1 319764360 10105770 complement(3843704..3844468) 1 NC_014910.1 KEGG: bav:BAV0211 IclR-family transcriptional regulator; PFAM: regulatory protein IclR; SMART: regulatory protein IclR; regulatory protein iclr 3844468 10105770 Alide_3694 Alicycliphilus denitrificans BC regulatory protein iclr YP_004128297.1 3843704 R 596153 CDS YP_004128298.1 319764361 10105771 3844558..3845640 1 NC_014910.1 KEGG: aav:Aave_3942 hypothetical protein; hypothetical protein 3845640 10105771 Alide_3695 Alicycliphilus denitrificans BC hypothetical protein YP_004128298.1 3844558 D 596153 CDS YP_004128299.1 319764362 10105772 3845652..3847370 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bpt:Bpet0794 acyl-CoA synthetase; AMP-dependent synthetase/ligase 3847370 10105772 Alide_3696 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004128299.1 3845652 D 596153 CDS YP_004128300.1 319764363 10105773 3847367..3848110 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB4035 oxidoreductase; short-chain dehydrogenase/reductase sdr 3848110 10105773 Alide_3697 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004128300.1 3847367 D 596153 CDS YP_004128301.1 319764364 10105774 3848184..3849389 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_B3887 UreA/short-chain amide ABC transporter; ABC transporter substrate-binding protein 3849389 10105774 Alide_3698 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128301.1 3848184 D 596153 CDS YP_004128302.1 319764365 10105775 3849406..3850368 1 NC_014910.1 KEGG: bav:BAV0225 exported protein; hypothetical protein 3850368 10105775 Alide_3699 Alicycliphilus denitrificans BC hypothetical protein YP_004128302.1 3849406 D 596153 CDS YP_004128303.1 319764366 10105776 3850372..3851571 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bav:BAV0226 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3851571 10105776 Alide_3700 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004128303.1 3850372 D 596153 CDS YP_004128304.1 319764367 10105777 complement(3851652..3852872) 1 NC_014910.1 KEGG: dia:Dtpsy_2975 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; cell division protein ftsz 3852872 10105777 Alide_3701 Alicycliphilus denitrificans BC cell division protein ftsz YP_004128304.1 3851652 R 596153 CDS YP_004128305.1 319764368 10105778 complement(3853044..3854273) 1 NC_014910.1 KEGG: dia:Dtpsy_2976 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; cell division protein ftsa 3854273 10105778 Alide_3702 Alicycliphilus denitrificans BC cell division protein ftsa YP_004128305.1 3853044 R 596153 CDS YP_004128306.1 319764369 10105779 complement(3854279..3855151) 1 NC_014910.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; cell division protein FtsQ; KEGG: dia:Dtpsy_2977 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein ftsq-type 3855151 10105779 Alide_3703 Alicycliphilus denitrificans BC polypeptide-transport-associated domain-containing protein ftsq-type YP_004128306.1 3854279 R 596153 CDS YP_004128307.1 319764370 10105780 complement(3855156..3856124) 1 NC_014910.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: ajs:Ajs_3668 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; d-alanine/d-alanine ligase 3856124 10105780 Alide_3704 Alicycliphilus denitrificans BC d-alanine/d-alanine ligase YP_004128307.1 3855156 R 596153 CDS YP_004128308.1 319764371 10105781 complement(3856121..3857554) 1 NC_014910.1 KEGG: dia:Dtpsy_2979 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; udp-n-acetylmuramate/alanine ligase 3857554 10105781 Alide_3705 Alicycliphilus denitrificans BC udp-n-acetylmuramate/alanine ligase YP_004128308.1 3856121 R 596153 CDS YP_004128309.1 319764372 10105782 complement(3857551..3858615) 1 NC_014910.1 KEGG: aav:Aave_0821 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase 3858615 10105782 Alide_3706 Alicycliphilus denitrificans BC udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase YP_004128309.1 3857551 R 596153 CDS YP_004128310.1 319764373 10105783 complement(3858612..3859883) 1 NC_014910.1 KEGG: ajs:Ajs_3671 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; cell division protein ftsw 3859883 10105783 Alide_3707 Alicycliphilus denitrificans BC cell division protein ftsw YP_004128310.1 3858612 R 596153 CDS YP_004128311.1 319764374 10105784 complement(3859880..3861661) 1 NC_014910.1 KEGG: dia:Dtpsy_2982 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; udp-n-acetylmuramoylalanine/d-glutamate ligase 3861661 10105784 Alide_3708 Alicycliphilus denitrificans BC udp-n-acetylmuramoylalanine/d-glutamate ligase YP_004128311.1 3859880 R 596153 CDS YP_004128312.1 319764375 10105785 complement(3861658..3862836) 1 NC_014910.1 KEGG: dia:Dtpsy_2983 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-n-acetylmuramoyl-pentapeptide- transferase 3862836 10105785 Alide_3709 Alicycliphilus denitrificans BC phospho-n-acetylmuramoyl-pentapeptide- transferase YP_004128312.1 3861658 R 596153 CDS YP_004128313.1 319764376 10105786 complement(3862827..3864218) 1 NC_014910.1 KEGG: ajs:Ajs_3674 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase 3864218 10105786 Alide_3710 Alicycliphilus denitrificans BC udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase YP_004128313.1 3862827 R 596153 CDS YP_004128314.1 319764377 10105787 complement(3864215..3865720) 1 NC_014910.1 KEGG: dia:Dtpsy_2985 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; udp-n-acetylmuramyl-tripeptide synthetase 3865720 10105787 Alide_3711 Alicycliphilus denitrificans BC udp-n-acetylmuramyl-tripeptide synthetase YP_004128314.1 3864215 R 596153 CDS YP_004128315.1 319764378 10105788 complement(3865717..3867465) 1 NC_014910.1 KEGG: dia:Dtpsy_2986 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; peptidoglycan glycosyltransferase 3867465 10105788 Alide_3712 Alicycliphilus denitrificans BC peptidoglycan glycosyltransferase YP_004128315.1 3865717 R 596153 CDS YP_004128316.1 319764379 10105789 complement(3867462..3867776) 1 NC_014910.1 KEGG: aav:Aave_0814 cell division protein FtsL; TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL; cell division protein ftsl 3867776 10105789 Alide_3713 Alicycliphilus denitrificans BC cell division protein ftsl YP_004128316.1 3867462 R 596153 CDS YP_004128317.1 319764380 10105790 complement(3867773..3868699) 1 NC_014910.1 KEGG: dia:Dtpsy_2988 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; s-adenosyl-methyltransferase mraw 3868699 10105790 Alide_3714 Alicycliphilus denitrificans BC s-adenosyl-methyltransferase mraw YP_004128317.1 3867773 R 596153 CDS YP_004128318.1 319764381 10105791 complement(3868709..3869137) 1 NC_014910.1 KEGG: dia:Dtpsy_2989 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain; mraz protein 3869137 10105791 Alide_3715 Alicycliphilus denitrificans BC mraz protein YP_004128318.1 3868709 R 596153 CDS YP_004128319.1 319764382 10105792 complement(3869383..3870687) 1 NC_014910.1 TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; KEGG: dia:Dtpsy_2990 ATP-dependent protease ATP-binding subunit HslU; SMART: AAA ATPase; heat shock protein hslvu, atpase subunit hslu 3870687 10105792 Alide_3716 Alicycliphilus denitrificans BC heat shock protein hslvu, atpase subunit hslu YP_004128319.1 3869383 R 596153 CDS YP_004128320.1 319764383 10105793 complement(3870774..3871319) 1 NC_014910.1 PFAM: 20S proteasome A and B subunits; KEGG: dia:Dtpsy_2991 ATP-dependent protease peptidase subunit; 20S proteasome subunits A/B 3871319 10105793 Alide_3717 Alicycliphilus denitrificans BC 20S proteasome subunits A/B YP_004128320.1 3870774 R 596153 CDS YP_004128321.1 319764384 10105794 complement(3871380..3873116) 1 NC_014910.1 KEGG: dia:Dtpsy_2992 hypothetical protein; hypothetical protein 3873116 10105794 Alide_3718 Alicycliphilus denitrificans BC hypothetical protein YP_004128321.1 3871380 R 596153 CDS YP_004128322.1 319764385 10105795 complement(3873148..3873639) 1 NC_014910.1 TIGRFAM: RNA polymerase-binding protein DksA; KEGG: dia:Dtpsy_2993 transcriptional regulator, TraR/DksA family; RNA polymerase-binding protein dksa 3873639 10105795 Alide_3719 Alicycliphilus denitrificans BC RNA polymerase-binding protein dksa YP_004128322.1 3873148 R 596153 CDS YP_004128323.1 319764386 10105796 complement(3873990..3875060) 1 NC_014910.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: dia:Dtpsy_2994 cobalamin synthesis protein P47K; cobalamin synthesis protein p47k 3875060 10105796 Alide_3720 Alicycliphilus denitrificans BC cobalamin synthesis protein p47k YP_004128323.1 3873990 R 596153 CDS YP_004128324.1 319764387 10105797 complement(3875153..3876268) 1 NC_014910.1 KEGG: dac:Daci_1875 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 3876268 10105797 Alide_3721 Alicycliphilus denitrificans BC response regulator receiver YP_004128324.1 3875153 R 596153 CDS YP_004128325.1 319764388 10105798 complement(3876261..3876935) 1 NC_014910.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: response regulator receiver; regulatory protein MerR; KEGG: dac:Daci_1874 response regulator receiver protein; SMART: response regulator receiver; excisionase family DNA binding domain-containing protein 3876935 10105798 Alide_3722 Alicycliphilus denitrificans BC excisionase family DNA binding domain-containing protein YP_004128325.1 3876261 R 596153 CDS YP_004128326.1 319764389 10105799 3877016..3877402 1 NC_014910.1 KEGG: ctt:CtCNB1_1998 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 3877402 10105799 Alide_3723 Alicycliphilus denitrificans BC response regulator receiver YP_004128326.1 3877016 D 596153 CDS YP_004128327.1 319764390 10105801 complement(3879964..3880632) 1 NC_014910.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: response regulator receiver; regulatory protein MerR; KEGG: aav:Aave_2239 response regulator receiver protein; SMART: response regulator receiver; excisionase family DNA binding domain-containing protein 3880632 10105801 Alide_3725 Alicycliphilus denitrificans BC excisionase family DNA binding domain-containing protein YP_004128327.1 3879964 R 596153 CDS YP_004128328.1 319764391 10105802 3880697..3881083 1 NC_014910.1 KEGG: lch:Lcho_0734 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 3881083 10105802 Alide_3726 Alicycliphilus denitrificans BC response regulator receiver YP_004128328.1 3880697 D 596153 CDS YP_004128329.1 319764392 10105803 3881080..3881889 1 NC_014910.1 KEGG: dac:Daci_0737 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal-dependent phosphohydrolase 3881889 10105803 Alide_3727 Alicycliphilus denitrificans BC metal-dependent phosphohydrolase YP_004128329.1 3881080 D 596153 CDS YP_004128330.1 319764393 10105804 3882027..3884105 1 NC_014910.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; pas sensor protein 3884105 10105804 Alide_3728 Alicycliphilus denitrificans BC pas sensor protein YP_004128330.1 3882027 D 596153 CDS YP_004128331.1 319764394 10105805 3884087..3885844 1 NC_014910.1 KEGG: lch:Lcho_4371 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; ATP-binding domain-containing protein 3885844 10105805 Alide_3729 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004128331.1 3884087 D 596153 CDS YP_004128332.1 319764395 10105806 3886038..3887732 1 NC_014910.1 KEGG: rfr:Rfer_1480 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 3887732 10105806 Alide_3730 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004128332.1 3886038 D 596153 CDS YP_004128333.1 319764396 10105807 complement(3887749..3888711) 1 NC_014910.1 KEGG: dia:Dtpsy_2996 tyrosine recombinase XerC; TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; tyrosine recombinase xerc 3888711 10105807 Alide_3731 Alicycliphilus denitrificans BC tyrosine recombinase xerc YP_004128333.1 3887749 R 596153 CDS YP_004128334.1 319764397 10105808 complement(3888805..3889500) 1 NC_014910.1 PFAM: protein of unknown function DUF484; KEGG: dia:Dtpsy_2997 protein of unknown function DUF484; hypothetical protein 3889500 10105808 Alide_3732 Alicycliphilus denitrificans BC hypothetical protein YP_004128334.1 3888805 R 596153 CDS YP_004128335.1 319764398 10105809 complement(3889497..3890375) 1 NC_014910.1 KEGG: dia:Dtpsy_2998 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; diaminopimelate epimerase 3890375 10105809 Alide_3733 Alicycliphilus denitrificans BC diaminopimelate epimerase YP_004128335.1 3889497 R 596153 CDS YP_004128336.1 319764399 10105810 3890451..3892145 1 NC_014910.1 PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_3001 beta-lactamase domain protein; nudix hydrolase 3892145 10105810 Alide_3734 Alicycliphilus denitrificans BC nudix hydrolase YP_004128336.1 3890451 D 596153 CDS YP_004128337.1 319764400 10105811 3892138..3892863 1 NC_014910.1 KEGG: dia:Dtpsy_3002 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RNA-binding s4 domain-containing protein 3892863 10105811 Alide_3735 Alicycliphilus denitrificans BC RNA-binding s4 domain-containing protein YP_004128337.1 3892138 D 596153 CDS YP_004128338.1 319764401 10105813 complement(3893359..3893586) 1 NC_014910.1 KEGG: ajs:Ajs_3722 hypothetical protein; hypothetical protein 3893586 10105813 Alide_3736 Alicycliphilus denitrificans BC hypothetical protein YP_004128338.1 3893359 R 596153 CDS YP_004128339.1 319764402 10105814 3893696..3894616 1 NC_014910.1 KEGG: dac:Daci_1442 cysteine synthase; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; cysteine synthase 3894616 10105814 Alide_3737 Alicycliphilus denitrificans BC cysteine synthase YP_004128339.1 3893696 D 596153 CDS YP_004128340.1 319764403 10105815 3894647..3895747 1 NC_014910.1 PFAM: heat shock protein DnaJ domain protein; KEGG: bvi:Bcep1808_3882 heat shock protein DnaJ domain-containing protein; molecular chaperone DnaJ 3895747 10105815 Alide_3738 Alicycliphilus denitrificans BC molecular chaperone DnaJ YP_004128340.1 3894647 D 596153 CDS YP_004128341.1 319764404 10105816 3895879..3897636 1 NC_014910.1 PFAM: FAD dependent oxidoreductase; KEGG: dia:Dtpsy_3010 FAD dependent oxidoreductase; FAD-dependent oxidoreductase 3897636 10105816 Alide_3739 Alicycliphilus denitrificans BC FAD-dependent oxidoreductase YP_004128341.1 3895879 D 596153 CDS YP_004128342.1 319764405 10105817 3897701..3898150 1 NC_014910.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: dac:Daci_0909 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 3898150 10105817 Alide_3740 Alicycliphilus denitrificans BC carboxymuconolactone decarboxylase YP_004128342.1 3897701 D 596153 CDS YP_004128343.1 319764406 10105818 complement(3898189..3899091) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_3510 LysR family transcriptional regulator; LysR family transcriptional regulator 3899091 10105818 Alide_3741 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128343.1 3898189 R 596153 CDS YP_004128344.1 319764407 10105819 3899161..3900030 1 NC_014910.1 KEGG: dac:Daci_3511 citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; citryl-CoA lyase 3900030 10105819 Alide_3742 Alicycliphilus denitrificans BC citryl-CoA lyase YP_004128344.1 3899161 D 596153 CDS YP_004128345.1 319764408 10105820 3900058..3901035 1 NC_014910.1 KEGG: dac:Daci_3512 hypothetical protein; hypothetical protein 3901035 10105820 Alide_3743 Alicycliphilus denitrificans BC hypothetical protein YP_004128345.1 3900058 D 596153 CDS YP_004128346.1 319764409 10105821 3901099..3902268 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_3513 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3902268 10105821 Alide_3744 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004128346.1 3901099 D 596153 CDS YP_004128347.1 319764410 10105822 3902265..3903107 1 NC_014910.1 KEGG: dac:Daci_3514 amidohydrolase 2; manually curated; PFAM: amidohydrolase 2; amidohydrolase 3903107 10105822 Alide_3745 Alicycliphilus denitrificans BC amidohydrolase YP_004128347.1 3902265 D 596153 CDS YP_004128348.1 319764411 10105823 3903124..3904080 1 NC_014910.1 KEGG: dac:Daci_3515 hypothetical protein; hypothetical protein 3904080 10105823 Alide_3746 Alicycliphilus denitrificans BC hypothetical protein YP_004128348.1 3903124 D 596153 CDS YP_004128349.1 319764412 10105824 complement(3904135..3904641) 1 NC_014910.1 KEGG: cti:RALTA_B1490 transcriptional activator of cyclohexanecarboxylate anaerobic degradation; MarR type; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; regulatory protein marr 3904641 10105824 Alide_3747 Alicycliphilus denitrificans BC regulatory protein marr YP_004128349.1 3904135 R 596153 CDS YP_004128350.1 319764413 10105825 3904772..3905539 1 NC_014910.1 KEGG: lch:Lcho_1185 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase 3905539 10105825 Alide_3748 Alicycliphilus denitrificans BC 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase YP_004128350.1 3904772 D 596153 CDS YP_004128351.1 319764414 10105826 3905583..3906365 1 NC_014910.1 KEGG: vei:Veis_4105 enoyl-CoA hydratase/isomerase; TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; PFAM: Enoyl-CoA hydratase/isomerase; 2-ketocyclohexanecarboxyl-CoA hydrolase 3906365 10105826 Alide_3749 Alicycliphilus denitrificans BC 2-ketocyclohexanecarboxyl-CoA hydrolase YP_004128351.1 3905583 D 596153 CDS YP_004128352.1 319764415 10105827 3906385..3907542 1 NC_014910.1 KEGG: lch:Lcho_1187 cyclohexanecarboxyl-CoA dehydrogenase; TIGRFAM: cyclohexanecarboxyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein; cyclohexanecarboxyl-CoA dehydrogenase 3907542 10105827 Alide_3750 Alicycliphilus denitrificans BC cyclohexanecarboxyl-CoA dehydrogenase YP_004128352.1 3906385 D 596153 CDS YP_004128353.1 319764416 10105828 3907578..3909233 1 NC_014910.1 KEGG: pna:Pnap_2126 cyclohexanecarboxylate-CoA ligase; TIGRFAM: cyclohexanecarboxylate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; cyclohexanecarboxylate-CoA ligase 3909233 10105828 Alide_3751 Alicycliphilus denitrificans BC cyclohexanecarboxylate-CoA ligase YP_004128353.1 3907578 D 596153 CDS YP_004128354.1 319764417 10105829 complement(3909334..3910266) 1 NC_014910.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha 3910266 10105829 Alide_3752 Alicycliphilus denitrificans BC electron transfer flavoprotein subunit alpha YP_004128354.1 3909334 R 596153 CDS YP_004128355.1 319764418 10105830 complement(3910284..3911033) 1 NC_014910.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunits alpha/beta 3911033 10105830 Alide_3753 Alicycliphilus denitrificans BC electron transfer flavoprotein subunits alpha/beta YP_004128355.1 3910284 R 596153 CDS YP_004128356.1 319764419 10105831 complement(3911058..3912032) 1 NC_014910.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_3732 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 3912032 10105831 Alide_3754 Alicycliphilus denitrificans BC 2-nitropropane dioxygenase YP_004128356.1 3911058 R 596153 CDS YP_004128357.1 319764420 10105832 complement(3912040..3913035) 1 NC_014910.1 KEGG: dac:Daci_1400 hypothetical protein; hypothetical protein 3913035 10105832 Alide_3755 Alicycliphilus denitrificans BC hypothetical protein YP_004128357.1 3912040 R 596153 CDS YP_004128358.1 319764421 10105833 complement(3913108..3914340) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_3734 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 3914340 10105833 Alide_3756 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004128358.1 3913108 R 596153 CDS YP_004128359.1 319764422 10105834 complement(3914365..3914787) 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: mrb:Mrub_0164 thioesterase superfamily protein; thioesterase superfamily protein 3914787 10105834 Alide_3757 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004128359.1 3914365 R 596153 CDS YP_004128360.1 319764423 10105835 complement(3914824..3915630) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dia:Dtpsy_3016 enoyl-CoA hydratase; enoyl-CoA hydratase 3915630 10105835 Alide_3758 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004128360.1 3914824 R 596153 CDS YP_004128361.1 319764424 10105836 complement(3915748..3916878) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_1396 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 3916878 10105836 Alide_3759 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004128361.1 3915748 R 596153 CDS YP_004128362.1 319764425 10105837 complement(3916889..3918085) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_3737 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 3918085 10105837 Alide_3760 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004128362.1 3916889 R 596153 CDS YP_004128363.1 319764426 10105838 complement(3918098..3919297) 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_3019 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 3919297 10105838 Alide_3761 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004128363.1 3918098 R 596153 CDS YP_004128364.1 319764427 10105839 complement(3919443..3921560) 1 NC_014910.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_1393 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 3921560 10105839 Alide_3762 Alicycliphilus denitrificans BC 3-hydroxyacyl-CoA dehydrogenase YP_004128364.1 3919443 R 596153 CDS YP_004128365.1 319764428 10105840 3921671..3922579 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_1392 LysR family transcriptional regulator; LysR family transcriptional regulator 3922579 10105840 Alide_3763 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128365.1 3921671 D 596153 CDS YP_004128366.1 319764429 10105841 3922617..3922931 1 NC_014910.1 KEGG: bpe:BP0072 transposase; transposase 3922931 10105841 Alide_3764 Alicycliphilus denitrificans BC transposase YP_004128366.1 3922617 D 596153 CDS YP_004128367.1 319764430 10105844 3924165..3924488 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase is3/is911 family protein 3924488 10105844 Alide_3768 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004128367.1 3924165 D 596153 CDS YP_004128368.1 319764431 10105845 3924485..3925399 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit; integrase catalytic region protein 3925399 10105845 Alide_3769 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004128368.1 3924485 D 596153 CDS YP_004128369.1 319764432 10105846 complement(3925534..3926346) 1 NC_014910.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_3784 integrase catalytic subunit; integrase catalytic region protein 3926346 10105846 Alide_3770 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004128369.1 3925534 R 596153 CDS YP_004128370.1 319764433 10105847 complement(3926364..3926630) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911; transposase is3/is911 family protein 3926630 10105847 Alide_3771 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004128370.1 3926364 R 596153 CDS YP_004128371.1 319764434 10105848 3926725..3926997 1 NC_014910.1 KEGG: vap:Vapar_6180 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3926997 10105848 Alide_3772 Alicycliphilus denitrificans BC glyoxalase/bleomycin resistance protein/dioxygenase YP_004128371.1 3926725 D 596153 CDS YP_004128372.1 319764435 10105850 complement(3927302..3928816) 1 NC_014910.1 KEGG: dia:Dtpsy_2523 transposase IS66; transposase is66 3928816 10105850 Alide_3774 Alicycliphilus denitrificans BC transposase is66 YP_004128372.1 3927302 R 596153 CDS YP_004128373.1 319764436 10105851 complement(3928899..3929231) 1 NC_014910.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; is66 orf2 family protein 3929231 10105851 Alide_3775 Alicycliphilus denitrificans BC is66 orf2 family protein YP_004128373.1 3928899 R 596153 CDS YP_004128374.1 319764437 10105852 complement(3929228..3929656) 1 NC_014910.1 PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase is3/is911 family protein 3929656 10105852 Alide_3776 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004128374.1 3929228 R 596153 CDS YP_004128375.1 319764438 10105853 complement(3930055..3930927) 1 NC_014910.1 PFAM: peptidase M48 Ste24p; KEGG: ajs:Ajs_3742 heat shock protein HtpX; peptidase m48 ste24p 3930927 10105853 Alide_3777 Alicycliphilus denitrificans BC peptidase m48 ste24p YP_004128375.1 3930055 R 596153 CDS YP_004128376.1 319764439 10105854 complement(3931054..3931845) 1 NC_014910.1 KEGG: ajs:Ajs_3743 transmembrane protein; transmembrane protein 3931845 10105854 Alide_3778 Alicycliphilus denitrificans BC transmembrane protein YP_004128376.1 3931054 R 596153 CDS YP_004128377.1 319764440 10105855 complement(3931827..3932876) 1 NC_014910.1 TIGRFAM: dihydroorotase, homodimeric type; KEGG: dia:Dtpsy_3026 dihydroorotase; PFAM: amidohydrolase; dihydroorotase, homodimeric type 3932876 10105855 Alide_3779 Alicycliphilus denitrificans BC dihydroorotase, homodimeric type YP_004128377.1 3931827 R 596153 CDS YP_004128378.1 319764441 10105857 3933633..3934022 1 NC_014910.1 PFAM: protein of unknown function DUF488; KEGG: rfr:Rfer_4130 hypothetical protein; hypothetical protein 3934022 10105857 Alide_3781 Alicycliphilus denitrificans BC hypothetical protein YP_004128378.1 3933633 D 596153 CDS YP_004128379.1 319764442 10105858 3934057..3934515 1 NC_014910.1 KEGG: ote:Oter_3729 alkylhydroperoxidase; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 3934515 10105858 Alide_3782 Alicycliphilus denitrificans BC alkylhydroperoxidase YP_004128379.1 3934057 D 596153 CDS YP_004128380.1 319764443 10105859 complement(3934536..3940370) 1 NC_014910.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: ajs:Ajs_3747 UvrA family protein; SMART: AAA ATPase; excinuclease ABC subunit A 3940370 10105859 Alide_3783 Alicycliphilus denitrificans BC excinuclease ABC subunit A YP_004128380.1 3934536 R 596153 CDS YP_004128381.1 319764444 10105860 3940504..3941616 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3029 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 3941616 10105860 Alide_3784 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128381.1 3940504 D 596153 CDS YP_004128382.1 319764445 10105861 complement(3941687..3941854) 1 NC_014910.1 KEGG: ajs:Ajs_3750 hypothetical protein; hypothetical protein 3941854 10105861 Alide_3785 Alicycliphilus denitrificans BC hypothetical protein YP_004128382.1 3941687 R 596153 CDS YP_004128383.1 319764446 10105862 complement(3942000..3943019) 1 NC_014910.1 KEGG: ajs:Ajs_3751 porin; porin 3943019 10105862 Alide_3786 Alicycliphilus denitrificans BC porin YP_004128383.1 3942000 R 596153 CDS YP_004128384.1 319764447 10105863 complement(3943222..3944916) 1 NC_014910.1 KEGG: ajs:Ajs_3752 major facilitator superfamily transporter; major facilitator superfamily transporter 3944916 10105863 Alide_3787 Alicycliphilus denitrificans BC major facilitator superfamily transporter YP_004128384.1 3943222 R 596153 CDS YP_004128385.1 319764448 10105864 3945233..3945541 1 NC_014910.1 PFAM: protein of unknown function DUF485; KEGG: dac:Daci_5956 hypothetical protein; hypothetical protein 3945541 10105864 Alide_3788 Alicycliphilus denitrificans BC hypothetical protein YP_004128385.1 3945233 D 596153 CDS YP_004128386.1 319764449 10105865 3945538..3947274 1 NC_014910.1 KEGG: rpf:Rpic12D_0449 SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; sss sodium solute transporter superfamily 3947274 10105865 Alide_3789 Alicycliphilus denitrificans BC sss sodium solute transporter superfamily YP_004128386.1 3945538 D 596153 CDS YP_004128387.1 319764450 10105866 complement(3947398..3948063) 1 NC_014910.1 KEGG: pna:Pnap_0481 DNA polymerase III subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; exonuclease rnase t and DNA polymerase iii 3948063 10105866 Alide_3790 Alicycliphilus denitrificans BC exonuclease rnase t and DNA polymerase iii YP_004128387.1 3947398 R 596153 CDS YP_004128388.1 319764451 10105867 complement(3948060..3949874) 1 NC_014910.1 KEGG: dac:Daci_5960 CBS domain-containing protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein; hypothetical protein 3949874 10105867 Alide_3791 Alicycliphilus denitrificans BC hypothetical protein YP_004128388.1 3948060 R 596153 CDS YP_004128389.1 319764452 10105868 complement(3949897..3950538) 1 NC_014910.1 PFAM: DSBA oxidoreductase; KEGG: dac:Daci_5961 DsbA oxidoreductase; dsba oxidoreductase 3950538 10105868 Alide_3792 Alicycliphilus denitrificans BC dsba oxidoreductase YP_004128389.1 3949897 R 596153 CDS YP_004128390.1 319764453 10105869 complement(3950535..3950795) 1 NC_014910.1 PFAM: protein of unknown function DUF1289; KEGG: dia:Dtpsy_3035 protein of unknown function DUF1289; hypothetical protein 3950795 10105869 Alide_3793 Alicycliphilus denitrificans BC hypothetical protein YP_004128390.1 3950535 R 596153 CDS YP_004128391.1 319764454 10105870 complement(3950792..3951286) 1 NC_014910.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vap:Vapar_4709 YbaK/prolyl-tRNA synthetase associated region; prolyl-tRNA synthetase 3951286 10105870 Alide_3794 Alicycliphilus denitrificans BC prolyl-tRNA synthetase YP_004128391.1 3950792 R 596153 CDS YP_004128392.1 319764455 10105871 complement(3951292..3952206) 1 NC_014910.1 PFAM: pyruvate carboxyltransferase; KEGG: ajs:Ajs_3757 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 3952206 10105871 Alide_3795 Alicycliphilus denitrificans BC pyruvate carboxyltransferase YP_004128392.1 3951292 R 596153 CDS YP_004128393.1 319764456 10105872 complement(3952492..3953412) 1 NC_014910.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dia:Dtpsy_3039 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein 3953412 10105872 Alide_3796 Alicycliphilus denitrificans BC d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein YP_004128393.1 3952492 R 596153 CDS YP_004128394.1 319764457 10105873 complement(3953450..3955471) 1 NC_014910.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: ajs:Ajs_3759 3-methylcrotonoyl-CoA carboxylase, alpha subunit; carbamoyl-phosphate synthase l chain ATP-binding protein 3955471 10105873 Alide_3797 Alicycliphilus denitrificans BC carbamoyl-phosphate synthase l chain ATP-binding protein YP_004128394.1 3953450 R 596153 CDS YP_004128395.1 319764458 10105874 complement(3955472..3956191) 1 NC_014910.1 KEGG: dia:Dtpsy_3041 transmembrane protein; transmembrane protein 3956191 10105874 Alide_3798 Alicycliphilus denitrificans BC transmembrane protein YP_004128395.1 3955472 R 596153 CDS YP_004128396.1 319764459 10105875 complement(3956213..3956992) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3761 enoyl-CoA hydratase; enoyl-CoA hydratase 3956992 10105875 Alide_3799 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004128396.1 3956213 R 596153 CDS YP_004128397.1 319764460 10105876 complement(3957003..3958607) 1 NC_014910.1 KEGG: dia:Dtpsy_3044 propionyl-CoA carboxylase; PFAM: carboxyl transferase; methylcrotonoyl-CoA carboxylase 3958607 10105876 Alide_3800 Alicycliphilus denitrificans BC methylcrotonoyl-CoA carboxylase YP_004128397.1 3957003 R 596153 CDS YP_004128398.1 319764461 10105877 complement(3958604..3960325) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dia:Dtpsy_3045 AMP-binding domain protein; AMP-dependent synthetase/ligase 3960325 10105877 Alide_3801 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004128398.1 3958604 R 596153 CDS YP_004128399.1 319764462 10105878 3960471..3961529 1 NC_014910.1 KEGG: dia:Dtpsy_3046 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 3961529 10105878 Alide_3802 Alicycliphilus denitrificans BC AraC family transcriptional regulator YP_004128399.1 3960471 D 596153 CDS YP_004128400.1 319764463 10105879 3961589..3962254 1 NC_014910.1 PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_3767 glutathione S-transferase domain-containing protein; glutathione s-transferase domain-containing protein 3962254 10105879 Alide_3803 Alicycliphilus denitrificans BC glutathione s-transferase domain-containing protein YP_004128400.1 3961589 D 596153 CDS YP_004128401.1 319764464 10105880 3962342..3963955 1 NC_014910.1 KEGG: vei:Veis_0287 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; choline dehydrogenase 3963955 10105880 Alide_3804 Alicycliphilus denitrificans BC choline dehydrogenase YP_004128401.1 3962342 D 596153 CDS YP_004128402.1 319764465 10105881 3964101..3965300 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_0291 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 3965300 10105881 Alide_3805 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128402.1 3964101 D 596153 CDS YP_004128403.1 319764466 10105882 3965429..3966349 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: vei:Veis_0290 inner-membrane translocator; inner-membrane translocator 3966349 10105882 Alide_3806 Alicycliphilus denitrificans BC inner-membrane translocator YP_004128403.1 3965429 D 596153 CDS YP_004128404.1 319764467 10105883 3966346..3968160 1 NC_014910.1 KEGG: vei:Veis_0289 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; ABC transporter 3968160 10105883 Alide_3807 Alicycliphilus denitrificans BC ABC transporter YP_004128404.1 3966346 D 596153 CDS YP_004128405.1 319764468 10105884 3968150..3968872 1 NC_014910.1 KEGG: vei:Veis_0288 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3968872 10105884 Alide_3808 Alicycliphilus denitrificans BC ABC transporter YP_004128405.1 3968150 D 596153 CDS YP_004128406.1 319764469 10105885 3969040..3970650 1 NC_014910.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: vei:Veis_0287 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 3970650 10105885 Alide_3809 Alicycliphilus denitrificans BC glucose-methanol-choline oxidoreductase YP_004128406.1 3969040 D 596153 CDS YP_004128407.1 319764470 10105886 3970661..3972319 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3769 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 3972319 10105886 Alide_3810 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004128407.1 3970661 D 596153 CDS YP_004128408.1 319764471 10105887 complement(3972349..3973737) 1 NC_014910.1 KEGG: ctt:CtCNB1_3118 transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; aminotransferase class i and ii 3973737 10105887 Alide_3811 Alicycliphilus denitrificans BC aminotransferase class i and ii YP_004128408.1 3972349 R 596153 CDS YP_004128409.1 319764472 10105888 3973802..3975094 1 NC_014910.1 KEGG: dac:Daci_0287 hydroxymethylglutaryl-CoA reductase, degradative; TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; hydroxymethylglutaryl-CoA reductase, degradative 3975094 10105888 Alide_3812 Alicycliphilus denitrificans BC hydroxymethylglutaryl-CoA reductase, degradative YP_004128409.1 3973802 D 596153 CDS YP_004128410.1 319764473 10105889 complement(3975154..3975816) 1 NC_014910.1 KEGG: dia:Dtpsy_3047 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 3975816 10105889 Alide_3813 Alicycliphilus denitrificans BC HAD-superfamily hydrolase YP_004128410.1 3975154 R 596153 CDS YP_004128411.1 319764474 10105890 complement(3975813..3977852) 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: dia:Dtpsy_3048 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; diguanylate cyclase 3977852 10105890 Alide_3814 Alicycliphilus denitrificans BC diguanylate cyclase YP_004128411.1 3975813 R 596153 CDS YP_004128412.1 319764475 10105891 3977958..3979469 1 NC_014910.1 PFAM: extracellular solute-binding protein family 5; KEGG: dia:Dtpsy_3049 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein 3979469 10105891 Alide_3815 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128412.1 3977958 D 596153 CDS YP_004128413.1 319764476 10105892 3979717..3980508 1 NC_014910.1 KEGG: rfr:Rfer_2484 hypothetical protein; hypothetical protein 3980508 10105892 Alide_3816 Alicycliphilus denitrificans BC hypothetical protein YP_004128413.1 3979717 D 596153 CDS YP_004128414.1 319764477 10105893 complement(3980511..3983471) 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: rfr:Rfer_2485 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase 3983471 10105893 Alide_3817 Alicycliphilus denitrificans BC diguanylate cyclase YP_004128414.1 3980511 R 596153 CDS YP_004128415.1 319764478 10105894 complement(3983604..3983999) 1 NC_014910.1 KEGG: dac:Daci_5982 hypothetical protein; hypothetical protein 3983999 10105894 Alide_3818 Alicycliphilus denitrificans BC hypothetical protein YP_004128415.1 3983604 R 596153 CDS YP_004128416.1 319764479 10105895 complement(3983996..3984697) 1 NC_014910.1 KEGG: pna:Pnap_0218 hypothetical protein; hypothetical protein 3984697 10105895 Alide_3819 Alicycliphilus denitrificans BC hypothetical protein YP_004128416.1 3983996 R 596153 CDS YP_004128417.1 319764480 10105896 3984791..3985285 1 NC_014910.1 PFAM: protein of unknown function DUF421; KEGG: aav:Aave_4363 hypothetical protein; hypothetical protein 3985285 10105896 Alide_3820 Alicycliphilus denitrificans BC hypothetical protein YP_004128417.1 3984791 D 596153 CDS YP_004128418.1 319764481 10105897 3985566..3986381 1 NC_014910.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reh:H16_A2299 IclR family transcriptional regulator; regulatory protein iclr 3986381 10105897 Alide_3821 Alicycliphilus denitrificans BC regulatory protein iclr YP_004128418.1 3985566 D 596153 CDS YP_004128419.1 319764482 10105898 3986378..3987082 1 NC_014910.1 KEGG: aav:Aave_4364 peptidase E; PFAM: peptidase S51 dipeptidase E; dipeptidase e 3987082 10105898 Alide_3822 Alicycliphilus denitrificans BC dipeptidase e YP_004128419.1 3986378 D 596153 CDS YP_004128420.1 319764483 10105899 3987113..3988015 1 NC_014910.1 PFAM: protein of unknown function DUF1177; KEGG: reh:H16_A2301 hypothetical protein; hypothetical protein 3988015 10105899 Alide_3823 Alicycliphilus denitrificans BC hypothetical protein YP_004128420.1 3987113 D 596153 CDS YP_004128421.1 319764484 10105900 3988012..3988689 1 NC_014910.1 PFAM: AroM family protein; KEGG: cti:RALTA_A1846 hypothetical protein; arom family protein 3988689 10105900 Alide_3824 Alicycliphilus denitrificans BC arom family protein YP_004128421.1 3988012 D 596153 CDS YP_004128422.1 319764485 10105901 3988724..3989704 1 NC_014910.1 KEGG: cti:RALTA_A1847 conserved hypothetical protein, UPF0065; hypothetical protein 3989704 10105901 Alide_3825 Alicycliphilus denitrificans BC hypothetical protein YP_004128422.1 3988724 D 596153 CDS YP_004128423.1 319764486 10105904 complement(3991034..3992164) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_3774 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase 3992164 10105904 Alide_3828 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004128423.1 3991034 R 596153 CDS YP_004128424.1 319764487 10105905 complement(3992188..3992856) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3053 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 3992856 10105905 Alide_3829 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004128424.1 3992188 R 596153 CDS YP_004128425.1 319764488 10105906 complement(3992926..3994116) 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ctt:CtCNB1_0487 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 3994116 10105906 Alide_3830 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004128425.1 3992926 R 596153 CDS YP_004128426.1 319764489 10105907 complement(3994113..3995939) 1 NC_014910.1 KEGG: ajs:Ajs_3777 bifunctional isocitrate dehydrogenase kinase/phosphatase protein; PFAM: Isocitrate dehydrogenase kinasephosphatase; (isocitrate dehydrogenase (nadp(+))) kinase 3995939 10105907 Alide_3831 Alicycliphilus denitrificans BC (isocitrate dehydrogenase (nadp(+))) kinase YP_004128426.1 3994113 R 596153 CDS YP_004128427.1 319764490 10105908 complement(3995992..3996657) 1 NC_014910.1 KEGG: dia:Dtpsy_3056 carbonate dehydratase; PFAM: carbonic anhydrase; carbonate dehydratase 3996657 10105908 Alide_3832 Alicycliphilus denitrificans BC carbonate dehydratase YP_004128427.1 3995992 R 596153 CDS YP_004128428.1 319764491 10105909 complement(3996711..3997901) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ajs:Ajs_3779 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase 3997901 10105909 Alide_3833 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004128428.1 3996711 R 596153 CDS YP_004128429.1 319764492 10105910 complement(3998041..3998448) 1 NC_014910.1 KEGG: dia:Dtpsy_3058 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 3998448 10105910 Alide_3834 Alicycliphilus denitrificans BC MerR family transcriptional regulator YP_004128429.1 3998041 R 596153 CDS YP_004128430.1 319764493 10105916 4004359..4006245 1 NC_014910.1 KEGG: ajs:Ajs_3785 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4006245 10105916 Alide_3835 Alicycliphilus denitrificans BC ABC transporter YP_004128430.1 4004359 D 596153 CDS YP_004128431.1 319764494 10105917 complement(4006249..4007358) 1 NC_014910.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: dia:Dtpsy_3060 response regulator receiver modulated CheB methylesterase; SMART: response regulator receiver; protein-glutamate methylesterase 4007358 10105917 Alide_3836 Alicycliphilus denitrificans BC protein-glutamate methylesterase YP_004128431.1 4006249 R 596153 CDS YP_004128432.1 319764495 10105918 complement(4007405..4008142) 1 NC_014910.1 PFAM: CheD family protein; KEGG: ajs:Ajs_3787 chemoreceptor glutamine deamidase CheD; chemotaxis protein CheD 4008142 10105918 Alide_3837 Alicycliphilus denitrificans BC chemotaxis protein CheD YP_004128432.1 4007405 R 596153 CDS YP_004128433.1 319764496 10105919 complement(4008159..4009073) 1 NC_014910.1 PFAM: MCP methyltransferase CheR-type; KEGG: dia:Dtpsy_3062 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type; protein-glutamate o-methyltransferase 4009073 10105919 Alide_3838 Alicycliphilus denitrificans BC protein-glutamate o-methyltransferase YP_004128433.1 4008159 R 596153 CDS YP_004128434.1 319764497 10105920 complement(4009073..4009555) 1 NC_014910.1 KEGG: dia:Dtpsy_3063 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; chemotaxis protein CheW 4009555 10105920 Alide_3839 Alicycliphilus denitrificans BC chemotaxis protein CheW YP_004128434.1 4009073 R 596153 CDS YP_004128435.1 319764498 10105921 complement(4009590..4011695) 1 NC_014910.1 KEGG: ajs:Ajs_3790 CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; chemotaxis protein CheW 4011695 10105921 Alide_3840 Alicycliphilus denitrificans BC chemotaxis protein CheW YP_004128435.1 4009590 R 596153 CDS YP_004128436.1 319764499 10105922 complement(4011752..4012114) 1 NC_014910.1 KEGG: dia:Dtpsy_3065 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 4012114 10105922 Alide_3841 Alicycliphilus denitrificans BC response regulator receiver YP_004128436.1 4011752 R 596153 CDS YP_004128437.1 319764500 10105923 complement(4012174..4012620) 1 NC_014910.1 KEGG: dia:Dtpsy_3066 hypothetical protein; hypothetical protein 4012620 10105923 Alide_3842 Alicycliphilus denitrificans BC hypothetical protein YP_004128437.1 4012174 R 596153 CDS YP_004128438.1 319764501 10105924 4012694..4013815 1 NC_014910.1 KEGG: ajs:Ajs_3793 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; ATP-binding domain-containing protein 4013815 10105924 Alide_3843 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004128438.1 4012694 D 596153 CDS YP_004128439.1 319764502 10105925 4013812..4014441 1 NC_014910.1 KEGG: dia:Dtpsy_3068 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver 4014441 10105925 Alide_3844 Alicycliphilus denitrificans BC response regulator receiver YP_004128439.1 4013812 D 596153 CDS YP_004128440.1 319764503 10105926 complement(4014526..4015290) 1 NC_014910.1 KEGG: ajs:Ajs_3795 flagellar biosynthetic protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; flagellar biosynthetic protein flir 4015290 10105926 Alide_3845 Alicycliphilus denitrificans BC flagellar biosynthetic protein flir YP_004128440.1 4014526 R 596153 CDS YP_004128441.1 319764504 10105927 complement(4015287..4015556) 1 NC_014910.1 KEGG: ajs:Ajs_3796 flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; flagellar biosynthetic protein fliq 4015556 10105927 Alide_3846 Alicycliphilus denitrificans BC flagellar biosynthetic protein fliq YP_004128441.1 4015287 R 596153 CDS YP_004128442.1 319764505 10105928 complement(4015567..4016322) 1 NC_014910.1 KEGG: ajs:Ajs_3797 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein flip 4016322 10105928 Alide_3847 Alicycliphilus denitrificans BC flagellar biosynthetic protein flip YP_004128442.1 4015567 R 596153 CDS YP_004128443.1 319764506 10105929 complement(4016315..4016680) 1 NC_014910.1 KEGG: ajs:Ajs_3798 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, flio 4016680 10105929 Alide_3848 Alicycliphilus denitrificans BC flagellar biosynthesis protein, flio YP_004128443.1 4016315 R 596153 CDS YP_004128444.1 319764507 10105930 complement(4016664..4017119) 1 NC_014910.1 KEGG: dia:Dtpsy_3073 flagellar motor switch protein FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein flin 4017119 10105930 Alide_3849 Alicycliphilus denitrificans BC flagellar motor switch protein flin YP_004128444.1 4016664 R 596153 CDS YP_004128445.1 319764508 10105931 complement(4017109..4018113) 1 NC_014910.1 KEGG: dia:Dtpsy_3074 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; flagellar motor switch protein flim 4018113 10105931 Alide_3850 Alicycliphilus denitrificans BC flagellar motor switch protein flim YP_004128445.1 4017109 R 596153 CDS YP_004128446.1 319764509 10105932 complement(4018120..4018695) 1 NC_014910.1 PFAM: flagellar basal body-associated protein FliL; KEGG: dia:Dtpsy_3075 flagellar basal body-associated protein FliL; flagellar basal body protein FliL 4018695 10105932 Alide_3851 Alicycliphilus denitrificans BC flagellar basal body protein FliL YP_004128446.1 4018120 R 596153 CDS YP_004128447.1 319764510 10105933 complement(4018861..4020228) 1 NC_014910.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: ajs:Ajs_3802 flagellar hook-length control protein; hypothetical protein 4020228 10105933 Alide_3852 Alicycliphilus denitrificans BC hypothetical protein YP_004128447.1 4018861 R 596153 CDS YP_004128448.1 319764511 10105934 complement(4020231..4020695) 1 NC_014910.1 KEGG: dia:Dtpsy_3077 flagellar export protein FliJ; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar export FliJ family protein; flagellar export protein flij 4020695 10105934 Alide_3853 Alicycliphilus denitrificans BC flagellar export protein flij YP_004128448.1 4020231 R 596153 CDS YP_004128449.1 319764512 10105935 complement(4020747..4022150) 1 NC_014910.1 TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: dia:Dtpsy_3078 ATPase FliI/YscN; SMART: AAA ATPase; flagellar protein export atpase flii 4022150 10105935 Alide_3854 Alicycliphilus denitrificans BC flagellar protein export atpase flii YP_004128449.1 4020747 R 596153 CDS YP_004128450.1 319764513 10105936 complement(4022140..4022865) 1 NC_014910.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: dia:Dtpsy_3079 flagellar assembly protein FliH; flagellar assembly protein FliH 4022865 10105936 Alide_3855 Alicycliphilus denitrificans BC flagellar assembly protein FliH YP_004128450.1 4022140 R 596153 CDS YP_004128451.1 319764514 10105937 complement(4022887..4023882) 1 NC_014910.1 KEGG: dia:Dtpsy_3080 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; flagellar motor switch protein flig 4023882 10105937 Alide_3856 Alicycliphilus denitrificans BC flagellar motor switch protein flig YP_004128451.1 4022887 R 596153 CDS YP_004128452.1 319764515 10105938 complement(4023913..4025607) 1 NC_014910.1 KEGG: dia:Dtpsy_3081 flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; flagellar m-ring protein flif 4025607 10105938 Alide_3857 Alicycliphilus denitrificans BC flagellar m-ring protein flif YP_004128452.1 4023913 R 596153 CDS YP_004128453.1 319764516 10105939 4025783..4026094 1 NC_014910.1 KEGG: dia:Dtpsy_3082 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit flie 4026094 10105939 Alide_3858 Alicycliphilus denitrificans BC flagellar hook-basal body complex subunit flie YP_004128453.1 4025783 D 596153 CDS YP_004128454.1 319764517 10105940 complement(4026310..4026609) 1 NC_014910.1 KEGG: dia:Dtpsy_3083 flagellar protein FliT; flagellar protein flit 4026609 10105940 Alide_3859 Alicycliphilus denitrificans BC flagellar protein flit YP_004128454.1 4026310 R 596153 CDS YP_004128455.1 319764518 10105941 complement(4026613..4027053) 1 NC_014910.1 KEGG: dia:Dtpsy_3084 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; flagellar protein flis 4027053 10105941 Alide_3860 Alicycliphilus denitrificans BC flagellar protein flis YP_004128455.1 4026613 R 596153 CDS YP_004128456.1 319764519 10105942 complement(4027120..4028565) 1 NC_014910.1 PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; flagellin hook IN repeat protein; KEGG: aav:Aave_4399 flagellar hook-associated 2 domain-containing protein; flagellar hook-associated 2 domain-containing protein 4028565 10105942 Alide_3861 Alicycliphilus denitrificans BC flagellar hook-associated 2 domain-containing protein YP_004128456.1 4027120 R 596153 CDS YP_004128457.1 319764520 10105943 complement(4028798..4030258) 1 NC_014910.1 PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: aav:Aave_4400 flagellin domain-containing protein; flagellin domain-containing protein 4030258 10105943 Alide_3862 Alicycliphilus denitrificans BC flagellin domain-containing protein YP_004128457.1 4028798 R 596153 CDS YP_004128458.1 319764521 10105944 4030593..4032062 1 NC_014910.1 PFAM: flagellin domain protein; KEGG: aav:Aave_4401 flagellin domain-containing protein; flagellin domain-containing protein 4032062 10105944 Alide_3863 Alicycliphilus denitrificans BC flagellin domain-containing protein YP_004128458.1 4030593 D 596153 CDS YP_004128459.1 319764522 10105945 complement(4032224..4037233) 1 NC_014910.1 KEGG: psa:PST_1402 hypothetical protein; manually curated; PFAM: glycosyl transferase family 2; Capsule polysaccharide biosynthesis protein; family 2 glycosyl transferase 4037233 10105945 Alide_3864 Alicycliphilus denitrificans BC family 2 glycosyl transferase YP_004128459.1 4032224 R 596153 CDS YP_004128460.1 319764523 10105946 complement(4037233..4038522) 1 NC_014910.1 PFAM: Dimethylmenaquinone methyltransferase; acylneuraminate cytidylyltransferase; KEGG: syd:Syncc9605_2247 demethylmenaquinone methyltransferase-like; dimethylmenaquinone methyltransferase 4038522 10105946 Alide_3865 Alicycliphilus denitrificans BC dimethylmenaquinone methyltransferase YP_004128460.1 4037233 R 596153 CDS YP_004128461.1 319764524 10105947 4039117..4039977 1 NC_014910.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_3088 MotA/TolQ/ExbB proton channel; mota/tolq/exbb proton channel 4039977 10105947 Alide_3866 Alicycliphilus denitrificans BC mota/tolq/exbb proton channel YP_004128461.1 4039117 D 596153 CDS YP_004128462.1 319764525 10105948 4039996..4040934 1 NC_014910.1 PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_3089 OmpA/MotB domain protein; ompa/motb domain-containing protein 4040934 10105948 Alide_3867 Alicycliphilus denitrificans BC ompa/motb domain-containing protein YP_004128462.1 4039996 D 596153 CDS YP_004128463.1 319764526 10105949 4041000..4041386 1 NC_014910.1 KEGG: dia:Dtpsy_3090 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 4041386 10105949 Alide_3868 Alicycliphilus denitrificans BC response regulator receiver YP_004128463.1 4041000 D 596153 CDS YP_004128464.1 319764527 10105950 4041389..4042021 1 NC_014910.1 PFAM: Chemotaxis phosphatase CheZ; KEGG: ajs:Ajs_3818 chemotaxis phosphatase, CheZ; chemotaxis protein CheZ 4042021 10105950 Alide_3869 Alicycliphilus denitrificans BC chemotaxis protein CheZ YP_004128464.1 4041389 D 596153 CDS YP_004128465.1 319764528 10105951 4042118..4043278 1 NC_014910.1 PFAM: type III secretion exporter; KEGG: dia:Dtpsy_3092 type III secretion exporter; type III secretion exporter 4043278 10105951 Alide_3870 Alicycliphilus denitrificans BC type III secretion exporter YP_004128465.1 4042118 D 596153 CDS YP_004128466.1 319764529 10105952 4043275..4045365 1 NC_014910.1 KEGG: dia:Dtpsy_3093 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; flagellar biosynthesis protein FlhA 4045365 10105952 Alide_3871 Alicycliphilus denitrificans BC flagellar biosynthesis protein FlhA YP_004128466.1 4043275 D 596153 CDS YP_004128467.1 319764530 10105953 4045362..4046924 1 NC_014910.1 TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: ajs:Ajs_3821 GTP-binding signal recognition particle; SMART: AAA ATPase; flagellar biosynthetic protein flhf 4046924 10105953 Alide_3872 Alicycliphilus denitrificans BC flagellar biosynthetic protein flhf YP_004128467.1 4045362 D 596153 CDS YP_004128468.1 319764531 10105954 4046914..4047717 1 NC_014910.1 KEGG: ajs:Ajs_3822 hypothetical protein; hypothetical protein 4047717 10105954 Alide_3873 Alicycliphilus denitrificans BC hypothetical protein YP_004128468.1 4046914 D 596153 CDS YP_004128469.1 319764532 10105955 4047723..4048439 1 NC_014910.1 KEGG: dia:Dtpsy_3096 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; RNA polymerase sigma factor, flia/whig family 4048439 10105955 Alide_3874 Alicycliphilus denitrificans BC RNA polymerase sigma factor, flia/whig family YP_004128469.1 4047723 D 596153 CDS YP_004128470.1 319764533 10105956 complement(4048569..4048907) 1 NC_014910.1 KEGG: ajs:Ajs_3824 hypothetical protein; hypothetical protein 4048907 10105956 Alide_3875 Alicycliphilus denitrificans BC hypothetical protein YP_004128470.1 4048569 R 596153 CDS YP_004128471.1 319764534 10105957 complement(4048943..4049266) 1 NC_014910.1 KEGG: dia:Dtpsy_3098 anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein; anti-sigma-28 factor flgm family protein 4049266 10105957 Alide_3876 Alicycliphilus denitrificans BC anti-sigma-28 factor flgm family protein YP_004128471.1 4048943 R 596153 CDS YP_004128472.1 319764535 10105958 complement(4049360..4050106) 1 NC_014910.1 KEGG: dia:Dtpsy_3099 flagella basal body P-ring formation protein FlgA; TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; flagellar basal body P-ring biosynthesis protein FlgA 4050106 10105958 Alide_3877 Alicycliphilus denitrificans BC flagellar basal body P-ring biosynthesis protein FlgA YP_004128472.1 4049360 R 596153 CDS YP_004128473.1 319764536 10105959 4050289..4050705 1 NC_014910.1 KEGG: ajs:Ajs_3827 flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; flagellar basal-body rod protein FlgB 4050705 10105959 Alide_3878 Alicycliphilus denitrificans BC flagellar basal-body rod protein FlgB YP_004128473.1 4050289 D 596153 CDS YP_004128474.1 319764537 10105960 4050717..4051121 1 NC_014910.1 KEGG: dia:Dtpsy_3101 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal body rod protein FlgC 4051121 10105960 Alide_3879 Alicycliphilus denitrificans BC flagellar basal body rod protein FlgC YP_004128474.1 4050717 D 596153 CDS YP_004128475.1 319764538 10105961 4051137..4051799 1 NC_014910.1 PFAM: flagellar hook capping protein; KEGG: dia:Dtpsy_3102 flagellar hook capping protein; flagellar hook capping protein 4051799 10105961 Alide_3880 Alicycliphilus denitrificans BC flagellar hook capping protein YP_004128475.1 4051137 D 596153 CDS YP_004128476.1 319764539 10105962 4051836..4053116 1 NC_014910.1 KEGG: aav:Aave_4423 hypothetical protein; TIGRFAM: flagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar hook-basal body protein 4053116 10105962 Alide_3881 Alicycliphilus denitrificans BC flagellar hook-basal body protein YP_004128476.1 4051836 D 596153 CDS YP_004128477.1 319764540 10105963 4053142..4053882 1 NC_014910.1 KEGG: dia:Dtpsy_3104 flagellar basal-body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; flagellar hook-basal body protein; PFAM: flagellar basal body rod protein; flagellar basal body rod protein FlgF 4053882 10105963 Alide_3882 Alicycliphilus denitrificans BC flagellar basal body rod protein FlgF YP_004128477.1 4053142 D 596153 CDS YP_004128478.1 319764541 10105964 4053907..4054689 1 NC_014910.1 KEGG: dia:Dtpsy_3105 flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgG 4054689 10105964 Alide_3883 Alicycliphilus denitrificans BC flagellar basal-body rod protein FlgG YP_004128478.1 4053907 D 596153 CDS YP_004128479.1 319764542 10105965 4054704..4055387 1 NC_014910.1 PFAM: flagellar L-ring protein; KEGG: aav:Aave_4426 flagellar L-ring protein; flagellar l-ring protein 4055387 10105965 Alide_3884 Alicycliphilus denitrificans BC flagellar l-ring protein YP_004128479.1 4054704 D 596153 CDS YP_004128480.1 319764543 10105966 4055582..4056727 1 NC_014910.1 PFAM: flagellar P-ring protein; KEGG: aav:Aave_4428 flagellar basal body P-ring protein; flagellar p-ring protein 4056727 10105966 Alide_3885 Alicycliphilus denitrificans BC flagellar p-ring protein YP_004128480.1 4055582 D 596153 CDS YP_004128481.1 319764544 10105967 4056727..4057665 1 NC_014910.1 TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ-like; KEGG: ajs:Ajs_3836 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase flgj 4057665 10105967 Alide_3886 Alicycliphilus denitrificans BC flagellar rod assembly protein/muramidase flgj YP_004128481.1 4056727 D 596153 CDS YP_004128482.1 319764545 10105968 4057677..4059659 1 NC_014910.1 KEGG: dia:Dtpsy_3110 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar hook-associated protein flgk 4059659 10105968 Alide_3887 Alicycliphilus denitrificans BC flagellar hook-associated protein flgk YP_004128482.1 4057677 D 596153 CDS YP_004128483.1 319764546 10105969 4059661..4060911 1 NC_014910.1 KEGG: aav:Aave_4431 flagellar hook-associated protein 3; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; flagellar hook-associated protein 3 4060911 10105969 Alide_3888 Alicycliphilus denitrificans BC flagellar hook-associated protein 3 YP_004128483.1 4059661 D 596153 CDS YP_004128484.1 319764547 10105970 4060988..4062202 1 NC_014910.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_3839 signal transduction protein; metal-dependent hydrolase hdod 4062202 10105970 Alide_3889 Alicycliphilus denitrificans BC metal-dependent hydrolase hdod YP_004128484.1 4060988 D 596153 CDS YP_004128485.1 319764548 10105971 4062348..4063343 1 NC_014910.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_3841 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 4063343 10105971 Alide_3890 Alicycliphilus denitrificans BC 2-nitropropane dioxygenase YP_004128485.1 4062348 D 596153 CDS YP_004128486.1 319764549 10105972 complement(4063388..4064827) 1 NC_014910.1 KEGG: dia:Dtpsy_3115 transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 4064827 10105972 Alide_3891 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004128486.1 4063388 R 596153 CDS YP_004128487.1 319764550 10105973 4064947..4065546 1 NC_014910.1 KEGG: ajs:Ajs_3843 hypothetical protein; hypothetical protein 4065546 10105973 Alide_3892 Alicycliphilus denitrificans BC hypothetical protein YP_004128487.1 4064947 D 596153 CDS YP_004128488.1 319764551 10105974 4065543..4066475 1 NC_014910.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: vap:Vapar_0746 protein of unknown function DUF6 transmembrane; hypothetical protein 4066475 10105974 Alide_3893 Alicycliphilus denitrificans BC hypothetical protein YP_004128488.1 4065543 D 596153 CDS YP_004128489.1 319764552 10105975 4066591..4067772 1 NC_014910.1 PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3845 GntR family transcriptional regulator; aminotransferase class i and ii 4067772 10105975 Alide_3894 Alicycliphilus denitrificans BC aminotransferase class i and ii YP_004128489.1 4066591 D 596153 CDS YP_004128490.1 319764553 10105976 4067787..4068662 1 NC_014910.1 KEGG: dia:Dtpsy_3119 phenazine biosynthesis protein PhzF family; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; phenazine biosynthesis protein phzf family 4068662 10105976 Alide_3895 Alicycliphilus denitrificans BC phenazine biosynthesis protein phzf family YP_004128490.1 4067787 D 596153 CDS YP_004128491.1 319764554 10105977 4068659..4069633 1 NC_014910.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dia:Dtpsy_3120 hypothetical protein; pyridoxal-5'-phosphate-dependent protein subunit beta 4069633 10105977 Alide_3896 Alicycliphilus denitrificans BC pyridoxal-5'-phosphate-dependent protein subunit beta YP_004128491.1 4068659 D 596153 CDS YP_004128492.1 319764555 10105978 4069830..4070918 1 NC_014910.1 KEGG: dia:Dtpsy_3121 hypothetical protein; hypothetical protein 4070918 10105978 Alide_3897 Alicycliphilus denitrificans BC hypothetical protein YP_004128492.1 4069830 D 596153 CDS YP_004128493.1 319764556 10105979 4070944..4072185 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3122 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 4072185 10105979 Alide_3898 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128493.1 4070944 D 596153 CDS YP_004128494.1 319764557 10105980 4072182..4073309 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3123 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 4073309 10105980 Alide_3899 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004128494.1 4072182 D 596153 CDS YP_004128495.1 319764558 10105981 4073339..4074052 1 NC_014910.1 PFAM: Phosphoglycerate mutase; KEGG: dia:Dtpsy_3124 phosphoglycerate mutase; phosphoglycerate mutase 4074052 10105981 Alide_3900 Alicycliphilus denitrificans BC phosphoglycerate mutase YP_004128495.1 4073339 D 596153 CDS YP_004128496.1 319764559 10105982 complement(4074043..4075233) 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pmy:Pmen_1813 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 4075233 10105982 Alide_3901 Alicycliphilus denitrificans BC diguanylate cyclase YP_004128496.1 4074043 R 596153 CDS YP_004128497.1 319764560 10105983 complement(4075309..4075812) 1 NC_014910.1 PFAM: nuclear export factor GLE1; KEGG: vap:Vapar_4773 protein of unknown function DUF461; nuclear export factor gle1 4075812 10105983 Alide_3902 Alicycliphilus denitrificans BC nuclear export factor gle1 YP_004128497.1 4075309 R 596153 CDS YP_004128498.1 319764561 10105984 complement(4075836..4078154) 1 NC_014910.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ctt:CtCNB1_0607 TonB-dependent receptor; tonb-dependent receptor 4078154 10105984 Alide_3903 Alicycliphilus denitrificans BC tonb-dependent receptor YP_004128498.1 4075836 R 596153 CDS YP_004128499.1 319764562 10105985 complement(4078315..4078662) 1 NC_014910.1 KEGG: vap:Vapar_2119 hypothetical protein; hypothetical protein 4078662 10105985 Alide_3904 Alicycliphilus denitrificans BC hypothetical protein YP_004128499.1 4078315 R 596153 CDS YP_004128500.1 319764563 10105986 complement(4078758..4079615) 1 NC_014910.1 PFAM: Creatininase; KEGG: dia:Dtpsy_3125 creatininase; creatininase 4079615 10105986 Alide_3905 Alicycliphilus denitrificans BC creatininase YP_004128500.1 4078758 R 596153 CDS YP_004128501.1 319764564 10105987 complement(4079632..4080612) 1 NC_014910.1 PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: dac:Daci_0588 hypothetical protein; ABC transporter substrate-binding protein 4080612 10105987 Alide_3906 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128501.1 4079632 R 596153 CDS YP_004128502.1 319764565 10105988 4080893..4082995 1 NC_014910.1 KEGG: dia:Dtpsy_3127 cytochrome c biogenesis protein transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; protein-disulfide reductase 4082995 10105988 Alide_3907 Alicycliphilus denitrificans BC protein-disulfide reductase YP_004128502.1 4080893 D 596153 CDS YP_004128503.1 319764566 10105989 4083095..4083628 1 NC_014910.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: vap:Vapar_0729 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 4083628 10105989 Alide_3908 Alicycliphilus denitrificans BC alkyl hydroperoxide reductase YP_004128503.1 4083095 D 596153 CDS YP_004128504.1 319764567 10105990 complement(4083665..4084411) 1 NC_014910.1 PFAM: protein of unknown function DUF81; KEGG: har:HEAR3236 hypothetical protein; hypothetical protein 4084411 10105990 Alide_3909 Alicycliphilus denitrificans BC hypothetical protein YP_004128504.1 4083665 R 596153 CDS YP_004128505.1 319764568 10105991 4084675..4085703 1 NC_014910.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: bpt:Bpet1138 peptidoglycan binding-like domain-containing protein; peptidoglycan-binding domain-containing protein 4085703 10105991 Alide_3910 Alicycliphilus denitrificans BC peptidoglycan-binding domain-containing protein YP_004128505.1 4084675 D 596153 CDS YP_004128506.1 319764569 10105992 4085746..4086864 1 NC_014910.1 TIGRFAM: uroporphyrinogen decarboxylase; KEGG: ajs:Ajs_3861 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 4086864 10105992 Alide_3911 Alicycliphilus denitrificans BC uroporphyrinogen decarboxylase YP_004128506.1 4085746 D 596153 CDS YP_004128507.1 319764570 10105993 4087481..4089589 1 NC_014910.1 TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: dia:Dtpsy_3135 primosomal protein N'; SMART: DEAD-like helicase ; helicase domain protein; primosomal protein n' 4089589 10105993 Alide_3912 Alicycliphilus denitrificans BC primosomal protein n' YP_004128507.1 4087481 D 596153 CDS YP_004128508.1 319764571 10105994 complement(4089652..4090839) 1 NC_014910.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: dia:Dtpsy_0032 beta-ketothiolase; PFAM: Thiolase-like; acetyl-CoA acetyltransferase 4090839 10105994 Alide_3913 Alicycliphilus denitrificans BC acetyl-CoA acetyltransferase YP_004128508.1 4089652 R 596153 CDS YP_004128509.1 319764572 10105995 complement(4090851..4091630) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_0026 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 4091630 10105995 Alide_3914 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004128509.1 4090851 R 596153 CDS YP_004128510.1 319764573 10105998 complement(4094813..4095634) 1 NC_014910.1 KEGG: dac:Daci_0028 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4095634 10105998 Alide_3917 Alicycliphilus denitrificans BC ABC transporter YP_004128510.1 4094813 R 596153 CDS YP_004128511.1 319764574 10105999 complement(4095643..4096824) 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0029 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 4096824 10105999 Alide_3918 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128511.1 4095643 R 596153 CDS YP_004128512.1 319764575 10106000 complement(4096836..4097873) 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_4064 inner-membrane translocator; inner-membrane translocator 4097873 10106000 Alide_3919 Alicycliphilus denitrificans BC inner-membrane translocator YP_004128512.1 4096836 R 596153 CDS YP_004128513.1 319764576 10106001 complement(4097873..4098754) 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dac:Daci_0031 inner-membrane translocator; inner-membrane translocator 4098754 10106001 Alide_3920 Alicycliphilus denitrificans BC inner-membrane translocator YP_004128513.1 4097873 R 596153 CDS YP_004128514.1 319764577 10106002 complement(4098751..4099605) 1 NC_014910.1 KEGG: dac:Daci_0032 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4099605 10106002 Alide_3921 Alicycliphilus denitrificans BC ABC transporter YP_004128514.1 4098751 R 596153 CDS YP_004128515.1 319764578 10106003 4099739..4100446 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: dac:Daci_0033 TetR family transcriptional regulator; regulatory protein tetr 4100446 10106003 Alide_3922 Alicycliphilus denitrificans BC regulatory protein tetr YP_004128515.1 4099739 D 596153 CDS YP_004128516.1 319764579 10106004 complement(4100441..4101445) 1 NC_014910.1 PFAM: Auxin Efflux Carrier; KEGG: ajs:Ajs_3864 auxin efflux carrier; auxin efflux carrier 4101445 10106004 Alide_3923 Alicycliphilus denitrificans BC auxin efflux carrier YP_004128516.1 4100441 R 596153 CDS YP_004128517.1 319764580 10106005 4101548..4103608 1 NC_014910.1 PFAM: UvrD/REP helicase; KEGG: dia:Dtpsy_3138 UvrD/REP helicase; UvrD/REP helicase 4103608 10106005 Alide_3924 Alicycliphilus denitrificans BC UvrD/REP helicase YP_004128517.1 4101548 D 596153 CDS YP_004128518.1 319764581 10106006 4103614..4104039 1 NC_014910.1 manually curated; KEGG: dia:Dtpsy_3139 hypothetical protein; hypothetical protein 4104039 10106006 Alide_3925 Alicycliphilus denitrificans BC hypothetical protein YP_004128518.1 4103614 D 596153 CDS YP_004128519.1 319764582 10106007 4104036..4105205 1 NC_014910.1 KEGG: dia:Dtpsy_3140 phospholipase A1; PFAM: phospholipase A1; phospholipase a(1) 4105205 10106007 Alide_3926 Alicycliphilus denitrificans BC phospholipase a(1) YP_004128519.1 4104036 D 596153 CDS YP_004128520.1 319764583 10106008 complement(4105218..4106345) 1 NC_014910.1 PFAM: protein of unknown function DUF323; KEGG: reu:Reut_B4568 hypothetical protein; hypothetical protein 4106345 10106008 Alide_3927 Alicycliphilus denitrificans BC hypothetical protein YP_004128520.1 4105218 R 596153 CDS YP_004128521.1 319764584 10106009 complement(4106377..4108176) 1 NC_014910.1 PFAM: sulfatase; KEGG: pap:PSPA7_3903 arylsulfatase; sulfatase 4108176 10106009 Alide_3928 Alicycliphilus denitrificans BC sulfatase YP_004128521.1 4106377 R 596153 CDS YP_004128522.1 319764585 10106010 complement(4108274..4109215) 1 NC_014910.1 KEGG: reu:Reut_B4677 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; catechol 2,3-dioxygenase 4109215 10106010 Alide_3929 Alicycliphilus denitrificans BC catechol 2,3-dioxygenase YP_004128522.1 4108274 R 596153 CDS YP_004128523.1 319764586 10106011 complement(4109245..4111008) 1 NC_014910.1 PFAM: monooxygenase FAD-binding; KEGG: reu:Reut_B4679 monooxygenase, FAD-binding; monooxygenase fad-binding protein 4111008 10106011 Alide_3930 Alicycliphilus denitrificans BC monooxygenase fad-binding protein YP_004128523.1 4109245 R 596153 CDS YP_004128524.1 319764587 10106012 complement(4111048..4111896) 1 NC_014910.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_B4678 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; fumarylacetoacetate (faa) hydrolase 4111896 10106012 Alide_3931 Alicycliphilus denitrificans BC fumarylacetoacetate (faa) hydrolase YP_004128524.1 4111048 R 596153 CDS YP_004128525.1 319764588 10106013 complement(4111969..4113111) 1 NC_014910.1 KEGG: vap:Vapar_4252 porin; porin 4113111 10106013 Alide_3932 Alicycliphilus denitrificans BC porin YP_004128525.1 4111969 R 596153 CDS YP_004128526.1 319764589 10106014 4113310..4114008 1 NC_014910.1 KEGG: reu:Reut_B4680 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 4114008 10106014 Alide_3933 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004128526.1 4113310 D 596153 CDS YP_004128527.1 319764590 10106015 4114254..4114640 1 NC_014910.1 KEGG: dia:Dtpsy_3141 hypothetical protein; hypothetical protein 4114640 10106015 Alide_3934 Alicycliphilus denitrificans BC hypothetical protein YP_004128527.1 4114254 D 596153 CDS YP_004128528.1 319764591 10106016 complement(4114718..4115194) 1 NC_014910.1 PFAM: UspA domain-containing protein; KEGG: dia:Dtpsy_3142 UspA domain protein; uspa domain-containing protein 4115194 10106016 Alide_3935 Alicycliphilus denitrificans BC uspa domain-containing protein YP_004128528.1 4114718 R 596153 CDS YP_004128529.1 319764592 10106017 4115254..4116426 1 NC_014910.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: dia:Dtpsy_3143 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 4116426 10106017 Alide_3936 Alicycliphilus denitrificans BC queuine tRNA-ribosyltransferase YP_004128529.1 4115254 D 596153 CDS YP_004128530.1 319764593 10106018 complement(4116431..4117474) 1 NC_014910.1 KEGG: dia:Dtpsy_3145 hypothetical protein; hypothetical protein 4117474 10106018 Alide_3937 Alicycliphilus denitrificans BC hypothetical protein YP_004128530.1 4116431 R 596153 CDS YP_004128531.1 319764594 10106019 4117597..4118010 1 NC_014910.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: dar:Daro_3803 PAS; SMART: PAS domain containing protein; PAC repeat-containing protein; pas sensor protein 4118010 10106019 Alide_3938 Alicycliphilus denitrificans BC pas sensor protein YP_004128531.1 4117597 D 596153 CDS YP_004128532.1 319764595 10106020 4118455..4119285 1 NC_014910.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dac:Daci_4431 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase 4119285 10106020 Alide_3939 Alicycliphilus denitrificans BC 6-phosphogluconate dehydrogenase YP_004128532.1 4118455 D 596153 CDS YP_004128533.1 319764596 10106021 4119335..4120303 1 NC_014910.1 KEGG: dac:Daci_4430 hypothetical protein; hypothetical protein 4120303 10106021 Alide_3940 Alicycliphilus denitrificans BC hypothetical protein YP_004128533.1 4119335 D 596153 CDS YP_004128534.1 319764597 10106022 4120422..4121402 1 NC_014910.1 KEGG: dac:Daci_5794 hypothetical protein; hypothetical protein 4121402 10106022 Alide_3941 Alicycliphilus denitrificans BC hypothetical protein YP_004128534.1 4120422 D 596153 CDS YP_004128535.1 319764598 10106023 4121456..4122130 1 NC_014910.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4429 hypothetical protein; dimethylmenaquinone methyltransferase 4122130 10106023 Alide_3942 Alicycliphilus denitrificans BC dimethylmenaquinone methyltransferase YP_004128535.1 4121456 D 596153 CDS YP_004128536.1 319764599 10106024 complement(4122099..4122794) 1 NC_014910.1 KEGG: bpt:Bpet0387 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 4122794 10106024 Alide_3943 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004128536.1 4122099 R 596153 CDS YP_004128537.1 319764600 10106025 complement(4122814..4124757) 1 NC_014910.1 KEGG: ajs:Ajs_3878 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4124757 10106025 Alide_3944 Alicycliphilus denitrificans BC phospholipid/glycerol acyltransferase YP_004128537.1 4122814 R 596153 CDS YP_004128538.1 319764601 10106026 4124947..4126827 1 NC_014910.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: pna:Pnap_0392 ATP-dependent metalloprotease FtsH; PFAM: AAA ATPase central domain protein; peptidase M41; ATP-dependent metalloprotease ftsh 4126827 10106026 Alide_3945 Alicycliphilus denitrificans BC ATP-dependent metalloprotease ftsh YP_004128538.1 4124947 D 596153 CDS YP_004128539.1 319764602 10106027 4126916..4127482 1 NC_014910.1 PFAM: phosphoribosyltransferase; KEGG: tbd:Tbd_0103 transcriptional regulator PyrR, putative; phosphoribosyltransferase 4127482 10106027 Alide_3946 Alicycliphilus denitrificans BC phosphoribosyltransferase YP_004128539.1 4126916 D 596153 CDS YP_004128540.1 319764603 10106028 4127479..4128123 1 NC_014910.1 PFAM: phosphoribosyltransferase; KEGG: rfr:Rfer_0394 phosphoribosyltransferase; phosphoribosyltransferase 4128123 10106028 Alide_3947 Alicycliphilus denitrificans BC phosphoribosyltransferase YP_004128540.1 4127479 D 596153 CDS YP_004128541.1 319764604 10106029 complement(4128125..4128775) 1 NC_014910.1 KEGG: rfr:Rfer_0395 dienelactone hydrolase; dienelactone hydrolase 4128775 10106029 Alide_3948 Alicycliphilus denitrificans BC dienelactone hydrolase YP_004128541.1 4128125 R 596153 CDS YP_004128542.1 319764605 10106030 complement(4128783..4129766) 1 NC_014910.1 KEGG: azo:azo0111 alcohol dehydrogenase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; zinc-binding alcohol dehydrogenase family protein 4129766 10106030 Alide_3949 Alicycliphilus denitrificans BC zinc-binding alcohol dehydrogenase family protein YP_004128542.1 4128783 R 596153 CDS YP_004128543.1 319764606 10106031 4129981..4130970 1 NC_014910.1 KEGG: dia:Dtpsy_3156 hypothetical protein; hypothetical protein 4130970 10106031 Alide_3950 Alicycliphilus denitrificans BC hypothetical protein YP_004128543.1 4129981 D 596153 CDS YP_004128544.1 319764607 10106032 4130993..4132459 1 NC_014910.1 PFAM: monooxygenase FAD-binding; KEGG: ajs:Ajs_3884 FAD dependent oxidoreductase; monooxygenase fad-binding protein 4132459 10106032 Alide_3951 Alicycliphilus denitrificans BC monooxygenase fad-binding protein YP_004128544.1 4130993 D 596153 CDS YP_004128545.1 319764608 10106033 4132456..4133562 1 NC_014910.1 KEGG: ajs:Ajs_3885 uncharacterized peroxidase-related enzyme; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 4133562 10106033 Alide_3952 Alicycliphilus denitrificans BC peroxidase-like protein YP_004128545.1 4132456 D 596153 CDS YP_004128546.1 319764609 10106034 complement(4133622..4134872) 1 NC_014910.1 PFAM: domain of unknown function DUF1745; FIST C domain; KEGG: dia:Dtpsy_3160 domain of unknown function DUF1745; hypothetical protein 4134872 10106034 Alide_3953 Alicycliphilus denitrificans BC hypothetical protein YP_004128546.1 4133622 R 596153 CDS YP_004128547.1 319764610 10106035 complement(4134897..4135679) 1 NC_014910.1 KEGG: dia:Dtpsy_3161 hypothetical protein; hypothetical protein 4135679 10106035 Alide_3954 Alicycliphilus denitrificans BC hypothetical protein YP_004128547.1 4134897 R 596153 CDS YP_004128548.1 319764611 10106036 4135907..4136338 1 NC_014910.1 KEGG: dia:Dtpsy_3162 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 4136338 10106036 Alide_3955 Alicycliphilus denitrificans BC histone family protein DNA-binding protein YP_004128548.1 4135907 D 596153 CDS YP_004128549.1 319764612 10106037 complement(4136396..4137148) 1 NC_014910.1 KEGG: ajs:Ajs_3890 protein tyrosine/serine phosphatase; protein tyrosine/serine phosphatase 4137148 10106037 Alide_3956 Alicycliphilus denitrificans BC protein tyrosine/serine phosphatase YP_004128549.1 4136396 R 596153 CDS YP_004128550.1 319764613 10106039 complement(4137342..4137731) 1 NC_014910.1 KEGG: dia:Dtpsy_0399 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; 50S ribosomal protein L17 4137731 10106039 Alide_3957 Alicycliphilus denitrificans BC 50S ribosomal protein L17 YP_004128550.1 4137342 R 596153 CDS YP_004128551.1 319764614 10106040 complement(4137820..4138815) 1 NC_014910.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: dia:Dtpsy_0398 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 4138815 10106040 Alide_3958 Alicycliphilus denitrificans BC DNA-directed RNA polymerase subunit alpha YP_004128551.1 4137820 R 596153 CDS YP_004128552.1 319764615 10106041 complement(4138928..4139602) 1 NC_014910.1 TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: aav:Aave_0625 30S ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 4139602 10106041 Alide_3959 Alicycliphilus denitrificans BC 30S ribosomal protein S4 YP_004128552.1 4138928 R 596153 CDS YP_004128553.1 319764616 10106042 complement(4139643..4140047) 1 NC_014910.1 KEGG: aav:Aave_0624 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; 30S ribosomal protein S11 4140047 10106042 Alide_3960 Alicycliphilus denitrificans BC 30S ribosomal protein S11 YP_004128553.1 4139643 R 596153 CDS YP_004128554.1 319764617 10106043 complement(4140063..4140428) 1 NC_014910.1 KEGG: dia:Dtpsy_0395 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13; 30S ribosomal protein S13 4140428 10106043 Alide_3961 Alicycliphilus denitrificans BC 30S ribosomal protein S13 YP_004128554.1 4140063 R 596153 CDS YP_004128555.1 319764618 10106044 complement(4140452..4140565) 1 NC_014910.1 KEGG: ctt:CtCNB1_4432 ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; 50S ribosomal protein L36 4140565 10106044 Alide_3962 Alicycliphilus denitrificans BC 50S ribosomal protein L36 YP_004128555.1 4140452 R 596153 CDS YP_004128556.1 319764619 10106045 complement(4140713..4142032) 1 NC_014910.1 manually curated; TIGRFAM: preprotein translocase, SecY subunit; KEGG: dia:Dtpsy_0393 preprotein translocase subunit SecY; PFAM: SecY protein; preprotein translocase, secy subunit 4142032 10106045 Alide_3963 Alicycliphilus denitrificans BC preprotein translocase, secy subunit YP_004128556.1 4140713 R 596153 CDS YP_004128557.1 319764620 10106046 complement(4142056..4142487) 1 NC_014910.1 TIGRFAM: ribosomal protein L15; KEGG: ctt:CtCNB1_4434 ribosomal protein L15; 50S ribosomal protein L15 4142487 10106046 Alide_3964 Alicycliphilus denitrificans BC 50S ribosomal protein L15 YP_004128557.1 4142056 R 596153 CDS YP_004128558.1 319764621 10106047 complement(4142498..4142680) 1 NC_014910.1 KEGG: dia:Dtpsy_0391 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; 50S ribosomal protein L30 4142680 10106047 Alide_3965 Alicycliphilus denitrificans BC 50S ribosomal protein L30 YP_004128558.1 4142498 R 596153 CDS YP_004128559.1 319764622 10106048 complement(4142693..4143214) 1 NC_014910.1 KEGG: dia:Dtpsy_0390 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; 30S ribosomal protein S5 4143214 10106048 Alide_3966 Alicycliphilus denitrificans BC 30S ribosomal protein S5 YP_004128559.1 4142693 R 596153 CDS YP_004128560.1 319764623 10106049 complement(4143230..4143595) 1 NC_014910.1 KEGG: dia:Dtpsy_0389 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; 50S ribosomal protein L18 4143595 10106049 Alide_3967 Alicycliphilus denitrificans BC 50S ribosomal protein L18 YP_004128560.1 4143230 R 596153 CDS YP_004128561.1 319764624 10106050 complement(4143607..4144140) 1 NC_014910.1 KEGG: dia:Dtpsy_0388 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 4144140 10106050 Alide_3968 Alicycliphilus denitrificans BC 50S ribosomal protein L6 YP_004128561.1 4143607 R 596153 CDS YP_004128562.1 319764625 10106051 complement(4144165..4144560) 1 NC_014910.1 PFAM: ribosomal protein S8; KEGG: aav:Aave_0615 30S ribosomal protein S8; 30S ribosomal protein S8 4144560 10106051 Alide_3969 Alicycliphilus denitrificans BC 30S ribosomal protein S8 YP_004128562.1 4144165 R 596153 CDS YP_004128563.1 319764626 10106052 complement(4144582..4144887) 1 NC_014910.1 PFAM: ribosomal protein S14; KEGG: dia:Dtpsy_0386 30S ribosomal protein S14; 30S ribosomal protein S14 4144887 10106052 Alide_3970 Alicycliphilus denitrificans BC 30S ribosomal protein S14 YP_004128563.1 4144582 R 596153 CDS YP_004128564.1 319764627 10106053 complement(4144897..4145436) 1 NC_014910.1 KEGG: dia:Dtpsy_0385 50S ribosomal protein L5; 50S ribosomal protein L5 4145436 10106053 Alide_3971 Alicycliphilus denitrificans BC 50S ribosomal protein L5 YP_004128564.1 4144897 R 596153 CDS YP_004128565.1 319764628 10106054 complement(4145446..4145766) 1 NC_014910.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: dia:Dtpsy_0384 50S ribosomal protein L24; SMART: KOW domain protein; 50S ribosomal protein L24 4145766 10106054 Alide_3972 Alicycliphilus denitrificans BC 50S ribosomal protein L24 YP_004128565.1 4145446 R 596153 CDS YP_004128566.1 319764629 10106055 complement(4145777..4146145) 1 NC_014910.1 KEGG: dia:Dtpsy_0383 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; 50S ribosomal protein L14 4146145 10106055 Alide_3973 Alicycliphilus denitrificans BC 50S ribosomal protein L14 YP_004128566.1 4145777 R 596153 CDS YP_004128567.1 319764630 10106056 complement(4146353..4147951) 1 NC_014910.1 KEGG: aav:Aave_0610 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase 4147951 10106056 Alide_3974 Alicycliphilus denitrificans BC glycerol-3-phosphate dehydrogenase YP_004128567.1 4146353 R 596153 CDS YP_004128568.1 319764631 10106057 4148074..4148835 1 NC_014910.1 KEGG: ajs:Ajs_0383 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; regulatory protein Crp; regulatory protein deor 4148835 10106057 Alide_3975 Alicycliphilus denitrificans BC regulatory protein deor YP_004128568.1 4148074 D 596153 CDS YP_004128569.1 319764632 10106058 4148858..4150363 1 NC_014910.1 KEGG: dia:Dtpsy_0373 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; glycerol kinase 4150363 10106058 Alide_3976 Alicycliphilus denitrificans BC glycerol kinase YP_004128569.1 4148858 D 596153 CDS YP_004128570.1 319764633 10106059 4150520..4151359 1 NC_014910.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: dia:Dtpsy_0372 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase 4151359 10106059 Alide_3977 Alicycliphilus denitrificans BC pyrroline-5-carboxylate reductase YP_004128570.1 4150520 D 596153 CDS YP_004128571.1 319764634 10106060 4151459..4153243 1 NC_014910.1 PFAM: Spore coat protein CotH; KEGG: glo:Glov_2109 spore coat protein CotH; spore coat protein coth 4153243 10106060 Alide_3978 Alicycliphilus denitrificans BC spore coat protein coth YP_004128571.1 4151459 D 596153 CDS YP_004128572.1 319764635 10106061 complement(4153322..4154194) 1 NC_014910.1 KEGG: dia:Dtpsy_0371 4-hydroxybenzoate polyprenyl transferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate polyprenyltransferase 4154194 10106061 Alide_3979 Alicycliphilus denitrificans BC 4-hydroxybenzoate polyprenyltransferase YP_004128572.1 4153322 R 596153 CDS YP_004128573.1 319764636 10106062 complement(4154282..4154806) 1 NC_014910.1 PFAM: Ferritin Dps family protein; KEGG: dia:Dtpsy_0369 ferritin Dps family protein; ferritin 4154806 10106062 Alide_3980 Alicycliphilus denitrificans BC ferritin YP_004128573.1 4154282 R 596153 CDS YP_004128574.1 319764637 10106063 complement(4154945..4155910) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0368 transcriptional regulator, LysR family; LysR family transcriptional regulator 4155910 10106063 Alide_3981 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128574.1 4154945 R 596153 CDS YP_004128575.1 319764638 10106064 complement(4155956..4158073) 1 NC_014910.1 TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; KEGG: ajs:Ajs_0376 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase domain protein; ATP-dependent DNA helicase RecG 4158073 10106064 Alide_3982 Alicycliphilus denitrificans BC ATP-dependent DNA helicase RecG YP_004128575.1 4155956 R 596153 CDS YP_004128576.1 319764639 10106065 4158250..4159515 1 NC_014910.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dia:Dtpsy_0366 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 4159515 10106065 Alide_3983 Alicycliphilus denitrificans BC metal dependent phosphohydrolase YP_004128576.1 4158250 D 596153 CDS YP_004128577.1 319764640 10106066 4159604..4160707 1 NC_014910.1 KEGG: dia:Dtpsy_0365 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; s-adenosylmethionine/tRNA-ribosyltransferase- isomerase 4160707 10106066 Alide_3984 Alicycliphilus denitrificans BC s-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_004128577.1 4159604 D 596153 CDS YP_004128578.1 319764641 10106067 4160855..4161736 1 NC_014910.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_0373 hypothetical protein; hypothetical protein 4161736 10106067 Alide_3985 Alicycliphilus denitrificans BC hypothetical protein YP_004128578.1 4160855 D 596153 CDS YP_004128579.1 319764642 10106068 complement(4161795..4163402) 1 NC_014910.1 KEGG: ctt:CtCNB1_4698 gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 4163402 10106068 Alide_3986 Alicycliphilus denitrificans BC gamma-glutamyltransferase YP_004128579.1 4161795 R 596153 CDS YP_004128580.1 319764643 10106069 complement(4163408..4164370) 1 NC_014910.1 KEGG: vei:Veis_0179 hypothetical protein; hypothetical protein 4164370 10106069 Alide_3987 Alicycliphilus denitrificans BC hypothetical protein YP_004128580.1 4163408 R 596153 CDS YP_004128581.1 319764644 10106070 4164497..4165402 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_0178 LysR family transcriptional regulator; LysR family transcriptional regulator 4165402 10106070 Alide_3988 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128581.1 4164497 D 596153 CDS YP_004128582.1 319764645 10106071 complement(4165411..4166127) 1 NC_014910.1 KEGG: dia:Dtpsy_0363 uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; uracil-DNA glycosylase 4166127 10106071 Alide_3989 Alicycliphilus denitrificans BC uracil-DNA glycosylase YP_004128582.1 4165411 R 596153 CDS YP_004128583.1 319764646 10106072 complement(4166188..4166988) 1 NC_014910.1 KEGG: dia:Dtpsy_0361 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; indole-3-glycerol phosphate synthase 4166988 10106072 Alide_3990 Alicycliphilus denitrificans BC indole-3-glycerol phosphate synthase YP_004128583.1 4166188 R 596153 CDS YP_004128584.1 319764647 10106073 complement(4166995..4167147) 1 NC_014910.1 KEGG: ctt:CtCNB1_4464 hypothetical protein; hypothetical protein 4167147 10106073 Alide_3991 Alicycliphilus denitrificans BC hypothetical protein YP_004128584.1 4166995 R 596153 CDS YP_004128585.1 319764648 10106074 complement(4167144..4168175) 1 NC_014910.1 TIGRFAM: anthranilate phosphoribosyltransferase; KEGG: dia:Dtpsy_0359 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 4168175 10106074 Alide_3992 Alicycliphilus denitrificans BC anthranilate phosphoribosyltransferase YP_004128585.1 4167144 R 596153 CDS YP_004128586.1 319764649 10106075 complement(4168175..4168744) 1 NC_014910.1 KEGG: dia:Dtpsy_0358 anthranilate synthase component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; glutamine amidotransferase of anthranilate synthase 4168744 10106075 Alide_3993 Alicycliphilus denitrificans BC glutamine amidotransferase of anthranilate synthase YP_004128586.1 4168175 R 596153 CDS YP_004128587.1 319764650 10106076 4169867..4170613 1 NC_014910.1 KEGG: bpt:Bpet1027 receptor protein-tyrosine kinase; receptor protein-tyrosine kinase 4170613 10106076 Alide_3994 Alicycliphilus denitrificans BC receptor protein-tyrosine kinase YP_004128587.1 4169867 D 596153 CDS YP_004128588.1 319764651 10106077 4170733..4170945 1 NC_014910.1 PFAM: Prophage CP4-57 regulatory; KEGG: ajs:Ajs_1320 phage transcriptional regulator, AlpA; prophage cp4-57 regulatory 4170945 10106077 Alide_3995 Alicycliphilus denitrificans BC prophage cp4-57 regulatory YP_004128588.1 4170733 D 596153 CDS YP_004128589.1 319764652 10106078 4170988..4171863 1 NC_014910.1 KEGG: ajs:Ajs_1319 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 4171863 10106078 Alide_3996 Alicycliphilus denitrificans BC cobyrinic acid a,c-diamide synthase YP_004128589.1 4170988 D 596153 CDS YP_004128590.1 319764653 10106079 4171847..4172116 1 NC_014910.1 KEGG: ajs:Ajs_1318 hypothetical protein; hypothetical protein 4172116 10106079 Alide_3997 Alicycliphilus denitrificans BC hypothetical protein YP_004128590.1 4171847 D 596153 CDS YP_004128591.1 319764654 10106080 4172109..4173782 1 NC_014910.1 KEGG: bpt:Bpet1031 hypothetical protein; hypothetical protein 4173782 10106080 Alide_3998 Alicycliphilus denitrificans BC hypothetical protein YP_004128591.1 4172109 D 596153 CDS YP_004128592.1 319764655 10106081 4173797..4174357 1 NC_014910.1 PFAM: Protein of unknown function DUF2857; KEGG: rme:Rmet_2293 hypothetical protein; hypothetical protein 4174357 10106081 Alide_3999 Alicycliphilus denitrificans BC hypothetical protein YP_004128592.1 4173797 D 596153 CDS YP_004128593.1 319764656 10106082 4174361..4175593 1 NC_014910.1 KEGG: bpt:Bpet1033 hypothetical protein; hypothetical protein 4175593 10106082 Alide_4000 Alicycliphilus denitrificans BC hypothetical protein YP_004128593.1 4174361 D 596153 CDS YP_004128594.1 319764657 10106083 4176013..4176807 1 NC_014910.1 KEGG: bpt:Bpet1034 transposon; TIGRFAM: Domain of unknown function DUF1845; PFAM: Domain of unknown function DUF1845; hypothetical protein 4176807 10106083 Alide_4001 Alicycliphilus denitrificans BC hypothetical protein YP_004128594.1 4176013 D 596153 CDS YP_004128595.1 319764658 10106084 4176804..4177331 1 NC_014910.1 PFAM: Protein of unknown function DUF3158; KEGG: bpt:Bpet1035 hypothetical protein; hypothetical protein 4177331 10106084 Alide_4002 Alicycliphilus denitrificans BC hypothetical protein YP_004128595.1 4176804 D 596153 CDS YP_004128596.1 319764659 10106085 4177405..4177857 1 NC_014910.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ajs:Ajs_1446 single-stranded DNA-binding protein; single-strand binding protein/primosomal replication protein n 4177857 10106085 Alide_4003 Alicycliphilus denitrificans BC single-strand binding protein/primosomal replication protein n YP_004128596.1 4177405 D 596153 CDS YP_004128597.1 319764660 10106086 4178134..4179306 1 NC_014910.1 PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; KEGG: ajs:Ajs_1445 DNA topoisomerase III; SMART: DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; DNA topoisomerase 4179306 10106086 Alide_4004 Alicycliphilus denitrificans BC DNA topoisomerase YP_004128597.1 4178134 D 596153 CDS YP_004128598.1 319764661 10106087 complement(4179316..4180119) 1 NC_014910.1 KEGG: ctt:CtCNB1_3734 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; istb domain-containing protein ATP-binding protein 4180119 10106087 Alide_4005 Alicycliphilus denitrificans BC istb domain-containing protein ATP-binding protein YP_004128598.1 4179316 R 596153 CDS YP_004128599.1 319764662 10106088 complement(4180109..4181635) 1 NC_014910.1 PFAM: Integrase catalytic region; regulatory protein MerR; KEGG: ctt:CtCNB1_2459 IstA; integrase catalytic region protein 4181635 10106088 Alide_4006 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004128599.1 4180109 R 596153 CDS YP_004128600.1 319764663 10106089 4181744..4182091 1 NC_014910.1 KEGG: rme:Rmet_2326 hypothetical protein; hypothetical protein 4182091 10106089 Alide_4007 Alicycliphilus denitrificans BC hypothetical protein YP_004128600.1 4181744 D 596153 CDS YP_004128601.1 319764664 10106090 4182156..4183265 1 NC_014910.1 KEGG: ajs:Ajs_1420 hypothetical protein; hypothetical protein 4183265 10106090 Alide_4008 Alicycliphilus denitrificans BC hypothetical protein YP_004128601.1 4182156 D 596153 CDS YP_004128602.1 319764665 10106091 4183315..4183635 1 NC_014910.1 KEGG: ajs:Ajs_1419 hypothetical protein; hypothetical protein 4183635 10106091 Alide_4009 Alicycliphilus denitrificans BC hypothetical protein YP_004128602.1 4183315 D 596153 CDS YP_004128603.1 319764666 10106092 4183725..4184030 1 NC_014910.1 KEGG: ajs:Ajs_1286 hypothetical protein; hypothetical protein 4184030 10106092 Alide_4010 Alicycliphilus denitrificans BC hypothetical protein YP_004128603.1 4183725 D 596153 CDS YP_004128604.1 319764667 10106093 4184163..4186442 1 NC_014910.1 SMART: DEAD-like helicase; KEGG: rme:Rmet_2330 helicase-like protein; dead-like helicase 4186442 10106093 Alide_4011 Alicycliphilus denitrificans BC dead-like helicase YP_004128604.1 4184163 D 596153 CDS YP_004128605.1 319764668 10106094 4186580..4187179 1 NC_014910.1 TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: pla:Plav_3409 hypothetical protein; integrating conjugative element protein pill, pfgi-1 4187179 10106094 Alide_4012 Alicycliphilus denitrificans BC integrating conjugative element protein pill, pfgi-1 YP_004128605.1 4186580 D 596153 CDS YP_004128606.1 319764669 10106095 4187176..4187820 1 NC_014910.1 KEGG: bpt:Bpet1067 hypothetical protein; hypothetical protein 4187820 10106095 Alide_4013 Alicycliphilus denitrificans BC hypothetical protein YP_004128606.1 4187176 D 596153 CDS YP_004128607.1 319764670 10106096 4187835..4188560 1 NC_014910.1 KEGG: bpt:Bpet1068 hypothetical protein; hypothetical protein 4188560 10106096 Alide_4014 Alicycliphilus denitrificans BC hypothetical protein YP_004128607.1 4187835 D 596153 CDS YP_004128608.1 319764671 10106097 4188542..4189144 1 NC_014910.1 PFAM: Lytic transglycosylase catalytic; KEGG: bpt:Bpet1069 hypothetical protein; lytic transglycosylase 4189144 10106097 Alide_4015 Alicycliphilus denitrificans BC lytic transglycosylase YP_004128608.1 4188542 D 596153 CDS YP_004128609.1 319764672 10106098 4189141..4189689 1 NC_014910.1 KEGG: bpt:Bpet1070 hypothetical protein; hypothetical protein 4189689 10106098 Alide_4016 Alicycliphilus denitrificans BC hypothetical protein YP_004128609.1 4189141 D 596153 CDS YP_004128610.1 319764673 10106099 4189694..4191886 1 NC_014910.1 manually curated; KEGG: ajs:Ajs_1274 hypothetical protein; hypothetical protein 4191886 10106099 Alide_4017 Alicycliphilus denitrificans BC hypothetical protein YP_004128610.1 4189694 D 596153 CDS YP_004128611.1 319764674 10106100 4191883..4192644 1 NC_014910.1 TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: dia:Dtpsy_1174 hypothetical protein; integrating conjugative element protein, pfl4697, membrane 4192644 10106100 Alide_4018 Alicycliphilus denitrificans BC integrating conjugative element protein, pfl4697, membrane YP_004128611.1 4191883 D 596153 CDS YP_004128612.1 319764675 10106101 4192743..4193126 1 NC_014910.1 PFAM: Protein of unknown function, RAQPRD; KEGG: bpt:Bpet1073 hypothetical protein; hypothetical protein 4193126 10106101 Alide_4019 Alicycliphilus denitrificans BC hypothetical protein YP_004128612.1 4192743 D 596153 CDS YP_004128613.1 319764676 10106102 4193123..4193356 1 NC_014910.1 KEGG: ajs:Ajs_1263 hypothetical protein; hypothetical protein 4193356 10106102 Alide_4020 Alicycliphilus denitrificans BC hypothetical protein YP_004128613.1 4193123 D 596153 CDS YP_004128614.1 319764677 10106103 4193373..4193732 1 NC_014910.1 KEGG: bpt:Bpet1075 hypothetical protein; hypothetical protein 4193732 10106103 Alide_4021 Alicycliphilus denitrificans BC hypothetical protein YP_004128614.1 4193373 D 596153 CDS YP_004128615.1 319764678 10106104 4193744..4194154 1 NC_014910.1 KEGG: bpt:Bpet1076 hypothetical protein; hypothetical protein 4194154 10106104 Alide_4022 Alicycliphilus denitrificans BC hypothetical protein YP_004128615.1 4193744 D 596153 CDS YP_004128616.1 319764679 10106105 4194151..4194843 1 NC_014910.1 KEGG: bpt:Bpet1077 hypothetical protein; hypothetical protein 4194843 10106105 Alide_4023 Alicycliphilus denitrificans BC hypothetical protein YP_004128616.1 4194151 D 596153 CDS YP_004128617.1 319764680 10106106 4194840..4195754 1 NC_014910.1 KEGG: dia:Dtpsy_1167 secreted protein; secreted protein 4195754 10106106 Alide_4024 Alicycliphilus denitrificans BC secreted protein YP_004128617.1 4194840 D 596153 CDS YP_004128618.1 319764681 10106107 4195744..4197162 1 NC_014910.1 TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: bpt:Bpet1079 hypothetical protein; integrating conjugative element protein, pfl4705 4197162 10106107 Alide_4025 Alicycliphilus denitrificans BC integrating conjugative element protein, pfl4705 YP_004128618.1 4195744 D 596153 CDS YP_004128619.1 319764682 10106108 4197143..4197592 1 NC_014910.1 TIGRFAM: Conjugative transfer region lipoprotein; KEGG: ajs:Ajs_1257 secreted protein; conjugative transfer region lipoprotein 4197592 10106108 Alide_4026 Alicycliphilus denitrificans BC conjugative transfer region lipoprotein YP_004128619.1 4197143 D 596153 CDS YP_004128620.1 319764683 10106109 4197592..4200474 1 NC_014910.1 KEGG: ajs:Ajs_1398 hypothetical protein; hypothetical protein 4200474 10106109 Alide_4027 Alicycliphilus denitrificans BC hypothetical protein YP_004128620.1 4197592 D 596153 CDS YP_004128621.1 319764684 10106110 4200499..4201263 1 NC_014910.1 PFAM: DSBA oxidoreductase; KEGG: bpt:Bpet1082 hypothetical protein; dsba oxidoreductase 4201263 10106110 Alide_4028 Alicycliphilus denitrificans BC dsba oxidoreductase YP_004128621.1 4200499 D 596153 CDS YP_004128622.1 319764685 10106111 4201440..4201934 1 NC_014910.1 KEGG: bpt:Bpet1083 DNA repair protein RadC-like protein; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein radc 4201934 10106111 Alide_4029 Alicycliphilus denitrificans BC DNA repair protein radc YP_004128622.1 4201440 D 596153 CDS YP_004128623.1 319764686 10106112 4202098..4202544 1 NC_014910.1 KEGG: bpt:Bpet1084 secreted protein; TIGRFAM: protein of unknown function DUF1525; PFAM: protein of unknown function DUF1525; hypothetical protein 4202544 10106112 Alide_4030 Alicycliphilus denitrificans BC hypothetical protein YP_004128623.1 4202098 D 596153 CDS YP_004128624.1 319764687 10106113 4202541..4203488 1 NC_014910.1 KEGG: bpt:Bpet1502 hypothetical protein; TIGRFAM: protein of unknown function DUF1527; PFAM: protein of unknown function DUF1527; hypothetical protein 4203488 10106113 Alide_4031 Alicycliphilus denitrificans BC hypothetical protein YP_004128624.1 4202541 D 596153 CDS YP_004128625.1 319764688 10106114 4203499..4204893 1 NC_014910.1 TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: bpt:Bpet1086 hypothetical protein; integrating conjugative element protein, pfl4711 4204893 10106114 Alide_4032 Alicycliphilus denitrificans BC integrating conjugative element protein, pfl4711 YP_004128625.1 4203499 D 596153 CDS YP_004128626.1 319764689 10106115 4204890..4205237 1 NC_014910.1 KEGG: bpt:Bpet1504 hypothetical protein; hypothetical protein 4205237 10106115 Alide_4033 Alicycliphilus denitrificans BC hypothetical protein YP_004128626.1 4204890 D 596153 CDS YP_004128627.1 319764690 10106116 4205253..4206776 1 NC_014910.1 KEGG: ajs:Ajs_1391 hypothetical protein; hypothetical protein 4206776 10106116 Alide_4034 Alicycliphilus denitrificans BC hypothetical protein YP_004128627.1 4205253 D 596153 CDS YP_004128628.1 319764691 10106117 complement(4206783..4207142) 1 NC_014910.1 KEGG: ajs:Ajs_1390 hypothetical protein; hypothetical protein 4207142 10106117 Alide_4035 Alicycliphilus denitrificans BC hypothetical protein YP_004128628.1 4206783 R 596153 CDS YP_004128629.1 319764692 10106118 complement(4207227..4207859) 1 NC_014910.1 PFAM: RES domain protein; KEGG: bpt:Bpet1090 hypothetical protein; res domain-containing protein 4207859 10106118 Alide_4036 Alicycliphilus denitrificans BC res domain-containing protein YP_004128629.1 4207227 R 596153 CDS YP_004128630.1 319764693 10106119 complement(4207872..4208498) 1 NC_014910.1 KEGG: ajs:Ajs_1388 hypothetical protein; hypothetical protein 4208498 10106119 Alide_4037 Alicycliphilus denitrificans BC hypothetical protein YP_004128630.1 4207872 R 596153 CDS YP_004128631.1 319764694 10106120 4208814..4210676 1 NC_014910.1 PFAM: Relaxase; protein of unknown function DUF1528; KEGG: har:HEAR2031 hypothetical protein; relaxase 4210676 10106120 Alide_4038 Alicycliphilus denitrificans BC relaxase YP_004128631.1 4208814 D 596153 CDS YP_004128632.1 319764695 10106121 complement(4210727..4211209) 1 NC_014910.1 manually curated; KEGG: dds:Ddes_1324 hypothetical protein; hypothetical protein 4211209 10106121 Alide_4039 Alicycliphilus denitrificans BC hypothetical protein YP_004128632.1 4210727 R 596153 CDS YP_004128633.1 319764696 10106124 complement(4211785..4213725) 1 NC_014910.1 KEGG: pla:Plav_3441 hypothetical protein; hypothetical protein 4213725 10106124 Alide_4042 Alicycliphilus denitrificans BC hypothetical protein YP_004128633.1 4211785 R 596153 CDS YP_004128634.1 319764697 10106125 complement(4213722..4214756) 1 NC_014910.1 KEGG: pla:Plav_3442 hypothetical protein; hypothetical protein 4214756 10106125 Alide_4043 Alicycliphilus denitrificans BC hypothetical protein YP_004128634.1 4213722 R 596153 CDS YP_004128635.1 319764698 10106126 4215033..4216559 1 NC_014910.1 PFAM: Integrase catalytic region; regulatory protein MerR; KEGG: ctt:CtCNB1_2459 IstA; integrase catalytic region protein 4216559 10106126 Alide_4044 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004128635.1 4215033 D 596153 CDS YP_004128636.1 319764699 10106127 4216549..4217352 1 NC_014910.1 KEGG: ctt:CtCNB1_3734 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; istb domain-containing protein ATP-binding protein 4217352 10106127 Alide_4045 Alicycliphilus denitrificans BC istb domain-containing protein ATP-binding protein YP_004128636.1 4216549 D 596153 CDS YP_004128637.1 319764700 10106128 complement(4217581..4217793) 1 NC_014910.1 KEGG: bpf:BpOF4_15365 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; hypothetical protein 4217793 10106128 Alide_4046 Alicycliphilus denitrificans BC hypothetical protein YP_004128637.1 4217581 R 596153 CDS YP_004128638.1 319764701 10106129 complement(4218240..4219187) 1 NC_014910.1 KEGG: pna:Pnap_4804 hypothetical protein; hypothetical protein 4219187 10106129 Alide_4047 Alicycliphilus denitrificans BC hypothetical protein YP_004128638.1 4218240 R 596153 CDS YP_004128639.1 319764702 10106130 complement(4219175..4219723) 1 NC_014910.1 PFAM: RES domain protein; KEGG: avn:Avin_32410 hypothetical protein; res domain-containing protein 4219723 10106130 Alide_4048 Alicycliphilus denitrificans BC res domain-containing protein YP_004128639.1 4219175 R 596153 CDS YP_004128640.1 319764703 10106131 complement(4219720..4220091) 1 NC_014910.1 KEGG: avn:Avin_32400 hypothetical protein; hypothetical protein 4220091 10106131 Alide_4049 Alicycliphilus denitrificans BC hypothetical protein YP_004128640.1 4219720 R 596153 CDS YP_004128641.1 319764704 10106132 complement(4220406..4220735) 1 NC_014910.1 PFAM: Chorismate mutase, type II; KEGG: dia:Dtpsy_0357 chorismate mutase; chorismate mutase, type ii 4220735 10106132 Alide_4050 Alicycliphilus denitrificans BC chorismate mutase, type ii YP_004128641.1 4220406 R 596153 CDS YP_004128642.1 319764705 10106133 complement(4220732..4222231) 1 NC_014910.1 TIGRFAM: anthranilate synthase component I; KEGG: dia:Dtpsy_0356 anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; anthranilate synthase component i 4222231 10106133 Alide_4051 Alicycliphilus denitrificans BC anthranilate synthase component i YP_004128642.1 4220732 R 596153 CDS YP_004128643.1 319764706 10106134 4222574..4224334 1 NC_014910.1 KEGG: dia:Dtpsy_0354 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 4224334 10106134 Alide_4052 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004128643.1 4222574 D 596153 CDS YP_004128644.1 319764707 10106135 4224497..4227262 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: slt:Slit_0879 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein; PAC repeat-containing protein; diguanylate cyclase 4227262 10106135 Alide_4053 Alicycliphilus denitrificans BC diguanylate cyclase YP_004128644.1 4224497 D 596153 CDS YP_004128645.1 319764708 10106136 complement(4227201..4227974) 1 NC_014910.1 KEGG: dia:Dtpsy_0352 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 4227974 10106136 Alide_4054 Alicycliphilus denitrificans BC phosphoglycolate phosphatase YP_004128645.1 4227201 R 596153 CDS YP_004128646.1 319764709 10106137 4228142..4228516 1 NC_014910.1 KEGG: ajs:Ajs_0362 hypothetical protein; hypothetical protein 4228516 10106137 Alide_4055 Alicycliphilus denitrificans BC hypothetical protein YP_004128646.1 4228142 D 596153 CDS YP_004128647.1 319764710 10106138 complement(4228535..4229215) 1 NC_014910.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: dia:Dtpsy_0350 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 4229215 10106138 Alide_4056 Alicycliphilus denitrificans BC ribulose-phosphate 3-epimerase YP_004128647.1 4228535 R 596153 CDS YP_004128648.1 319764711 10106139 4229264..4229671 1 NC_014910.1 PFAM: ApaG domain protein; KEGG: dia:Dtpsy_0349 ApaG; ApaG domain-containing protein 4229671 10106139 Alide_4057 Alicycliphilus denitrificans BC ApaG domain-containing protein YP_004128648.1 4229264 D 596153 CDS YP_004128649.1 319764712 10106140 4229668..4231656 1 NC_014910.1 PFAM: site-specific recombinase Gcr; KEGG: ajs:Ajs_0359 site-specific recombinase transmembrane protein; site-specific recombinase gcr 4231656 10106140 Alide_4058 Alicycliphilus denitrificans BC site-specific recombinase gcr YP_004128649.1 4229668 D 596153 CDS YP_004128650.1 319764713 10106141 4231826..4233091 1 NC_014910.1 PFAM: sodium/hydrogen exchanger; KEGG: ajs:Ajs_0358 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4233091 10106141 Alide_4059 Alicycliphilus denitrificans BC sodium/hydrogen exchanger YP_004128650.1 4231826 D 596153 CDS YP_004128651.1 319764714 10106142 4233081..4234205 1 NC_014910.1 PFAM: glutamate--cysteine ligase GCS2; KEGG: dia:Dtpsy_0346 carboxylate-amine ligase; glutamate--cysteine ligase gcs2 4234205 10106142 Alide_4060 Alicycliphilus denitrificans BC glutamate--cysteine ligase gcs2 YP_004128651.1 4233081 D 596153 CDS YP_004128652.1 319764715 10106143 4234208..4235191 1 NC_014910.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: ajs:Ajs_0356 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 4235191 10106143 Alide_4061 Alicycliphilus denitrificans BC thiamine-monophosphate kinase YP_004128652.1 4234208 D 596153 CDS YP_004128653.1 319764716 10106144 complement(4235179..4235868) 1 NC_014910.1 PFAM: regulatory protein TetR; KEGG: bte:BTH_II0441 TetR family transcriptional regulator; regulatory protein tetr 4235868 10106144 Alide_4062 Alicycliphilus denitrificans BC regulatory protein tetr YP_004128653.1 4235179 R 596153 CDS YP_004128654.1 319764717 10106145 4236027..4237769 1 NC_014910.1 PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: eba:ebA5073 poly-beta-hydroxyalkanoate synthase; poly-beta-hydroxybutyrate polymerase domain-containing protein 4237769 10106145 Alide_4063 Alicycliphilus denitrificans BC poly-beta-hydroxybutyrate polymerase domain-containing protein YP_004128654.1 4236027 D 596153 CDS YP_004128655.1 319764718 10106146 4237783..4239255 1 NC_014910.1 KEGG: har:HEAR2593 outer membrane transport protein involved in copper (silver) tolerance (CusC); TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; rnd efflux system, outer membrane lipoprotein, nodt family 4239255 10106146 Alide_4064 Alicycliphilus denitrificans BC rnd efflux system, outer membrane lipoprotein, nodt family YP_004128655.1 4237783 D 596153 CDS YP_004128656.1 319764719 10106147 4239252..4240325 1 NC_014910.1 PFAM: secretion protein HlyD family protein; KEGG: har:HEAR2592 ABC transport system, membrane protein; secretion protein hlyd family protein 4240325 10106147 Alide_4065 Alicycliphilus denitrificans BC secretion protein hlyd family protein YP_004128656.1 4239252 D 596153 CDS YP_004128657.1 319764720 10106148 4240329..4243076 1 NC_014910.1 KEGG: dac:Daci_0759 ABC transporter related; PFAM: ABC transporter related; ABC transporter; SMART: AAA ATPase; ABC transporter 4243076 10106148 Alide_4066 Alicycliphilus denitrificans BC ABC transporter YP_004128657.1 4240329 D 596153 CDS YP_004128658.1 319764721 10106149 4243076..4244209 1 NC_014910.1 PFAM: ABC transporter; KEGG: dia:Dtpsy_1496 ABC transporter; ABC transporter 4244209 10106149 Alide_4067 Alicycliphilus denitrificans BC ABC transporter YP_004128658.1 4243076 D 596153 CDS YP_004128659.1 319764722 10106150 4244228..4245670 1 NC_014910.1 KEGG: rpf:Rpic12D_4426 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; PFAM: MaoC domain protein dehydratase; phosphate acetyl/butaryl transferase; phosphate acetyltransferase 4245670 10106150 Alide_4068 Alicycliphilus denitrificans BC phosphate acetyltransferase YP_004128659.1 4244228 D 596153 CDS YP_004128660.1 319764723 10106151 4245667..4246857 1 NC_014910.1 KEGG: dac:Daci_0754 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 4246857 10106151 Alide_4069 Alicycliphilus denitrificans BC acetate kinase YP_004128660.1 4245667 D 596153 CDS YP_004128661.1 319764724 10106152 4246867..4247394 1 NC_014910.1 PFAM: phosphatidylglycerophosphatase A; KEGG: dia:Dtpsy_0344 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase a 4247394 10106152 Alide_4070 Alicycliphilus denitrificans BC phosphatidylglycerophosphatase a YP_004128661.1 4246867 D 596153 CDS YP_004128662.1 319764725 10106153 4247401..4247919 1 NC_014910.1 PFAM: CinA domain protein; KEGG: ajs:Ajs_0354 CinA domain-containing protein; cina domain-containing protein 4247919 10106153 Alide_4071 Alicycliphilus denitrificans BC cina domain-containing protein YP_004128662.1 4247401 D 596153 CDS YP_004128663.1 319764726 10106154 complement(4247932..4249566) 1 NC_014910.1 KEGG: lch:Lcho_3216 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 4249566 10106154 Alide_4072 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004128663.1 4247932 R 596153 CDS YP_004128664.1 319764727 10106155 complement(4249569..4251815) 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: slt:Slit_1460 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; diguanylate cyclase 4251815 10106155 Alide_4073 Alicycliphilus denitrificans BC diguanylate cyclase YP_004128664.1 4249569 R 596153 CDS YP_004128665.1 319764728 10106156 complement(4252097..4252702) 1 NC_014910.1 KEGG: nhl:Nhal_1312 response regulator receiver; PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; response regulator receiver 4252702 10106156 Alide_4074 Alicycliphilus denitrificans BC response regulator receiver YP_004128665.1 4252097 R 596153 CDS YP_004128666.1 319764729 10106157 complement(4252699..4254213) 1 NC_014910.1 KEGG: lch:Lcho_2722 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; pas sensor protein 4254213 10106157 Alide_4075 Alicycliphilus denitrificans BC pas sensor protein YP_004128666.1 4252699 R 596153 CDS YP_004128667.1 319764730 10106158 complement(4254438..4255253) 1 NC_014910.1 PFAM: SEC-C motif domain protein; KEGG: dia:Dtpsy_0342 sec-C motif domain protein; sec-c motif domain-containing protein 4255253 10106158 Alide_4076 Alicycliphilus denitrificans BC sec-c motif domain-containing protein YP_004128667.1 4254438 R 596153 CDS YP_004128668.1 319764731 10106159 complement(4255686..4256171) 1 NC_014910.1 KEGG: dia:Dtpsy_0340 hypothetical protein; hypothetical protein 4256171 10106159 Alide_4077 Alicycliphilus denitrificans BC hypothetical protein YP_004128668.1 4255686 R 596153 CDS YP_004128669.1 319764732 10106160 complement(4256161..4257429) 1 NC_014910.1 KEGG: ajs:Ajs_0350 RNA methylase; PFAM: RNA methylase; THUMP domain-containing protein; rRNA (guanine-n(2)-)-methyltransferase 4257429 10106160 Alide_4078 Alicycliphilus denitrificans BC rRNA (guanine-n(2)-)-methyltransferase YP_004128669.1 4256161 R 596153 CDS YP_004128670.1 319764733 10106161 4257542..4259365 1 NC_014910.1 KEGG: aav:Aave_0421 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 4259365 10106161 Alide_4079 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004128670.1 4257542 D 596153 CDS YP_004128671.1 319764734 10106162 complement(4259367..4259810) 1 NC_014910.1 KEGG: ajs:Ajs_0349 hypothetical protein; hypothetical protein 4259810 10106162 Alide_4080 Alicycliphilus denitrificans BC hypothetical protein YP_004128671.1 4259367 R 596153 CDS YP_004128672.1 319764735 10106163 complement(4259824..4261377) 1 NC_014910.1 KEGG: dia:Dtpsy_0337 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; RNA polymerase sigma-54 factor, rpon 4261377 10106163 Alide_4081 Alicycliphilus denitrificans BC RNA polymerase sigma-54 factor, rpon YP_004128672.1 4259824 R 596153 CDS YP_004128673.1 319764736 10106164 complement(4261427..4262227) 1 NC_014910.1 KEGG: aav:Aave_0418 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4262227 10106164 Alide_4082 Alicycliphilus denitrificans BC ABC transporter YP_004128673.1 4261427 R 596153 CDS YP_004128674.1 319764737 10106165 complement(4262224..4262868) 1 NC_014910.1 KEGG: dia:Dtpsy_0335 lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; lipopolysaccharide transport periplasmic protein lpta 4262868 10106165 Alide_4083 Alicycliphilus denitrificans BC lipopolysaccharide transport periplasmic protein lpta YP_004128674.1 4262224 R 596153 CDS YP_004128675.1 319764738 10106166 complement(4262988..4263644) 1 NC_014910.1 PFAM: DSBA oxidoreductase; KEGG: dia:Dtpsy_0334 DsbA oxidoreductase; dsba oxidoreductase 4263644 10106166 Alide_4084 Alicycliphilus denitrificans BC dsba oxidoreductase YP_004128675.1 4262988 R 596153 CDS YP_004128676.1 319764739 10106167 complement(4263724..4264359) 1 NC_014910.1 PFAM: Sporulation domain-containing protein; KEGG: dia:Dtpsy_0333 sporulation domain protein; sporulation domain-containing protein 4264359 10106167 Alide_4085 Alicycliphilus denitrificans BC sporulation domain-containing protein YP_004128676.1 4263724 R 596153 CDS YP_004128677.1 319764740 10106168 complement(4264372..4266075) 1 NC_014910.1 TIGRFAM: arginyl-tRNA synthetase; KEGG: ajs:Ajs_0343 arginyl-tRNA synthetase; arginyl-tRNA synthetase 4266075 10106168 Alide_4086 Alicycliphilus denitrificans BC arginyl-tRNA synthetase YP_004128677.1 4264372 R 596153 CDS YP_004128678.1 319764741 10106169 4266200..4266526 1 NC_014910.1 PFAM: PsiF repeat-containing protein; KEGG: dia:Dtpsy_0331 PsiF repeat protein; psif repeat-containing protein 4266526 10106169 Alide_4087 Alicycliphilus denitrificans BC psif repeat-containing protein YP_004128678.1 4266200 D 596153 CDS YP_004128679.1 319764742 10106170 complement(4266584..4267039) 1 NC_014910.1 PFAM: Protein of unknown function DUF2214, membrane; KEGG: ajs:Ajs_0341 transmembrane protein; hypothetical protein 4267039 10106170 Alide_4088 Alicycliphilus denitrificans BC hypothetical protein YP_004128679.1 4266584 R 596153 CDS YP_004128680.1 319764743 10106171 complement(4267133..4268470) 1 NC_014910.1 PFAM: sodium:dicarboxylate symporter; KEGG: dac:Daci_2923 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 4268470 10106171 Alide_4089 Alicycliphilus denitrificans BC sodium:dicarboxylate symporter YP_004128680.1 4267133 R 596153 CDS YP_004128681.1 319764744 10106172 4268671..4271331 1 NC_014910.1 KEGG: dac:Daci_2922 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; ATP-binding domain-containing protein 4271331 10106172 Alide_4090 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004128681.1 4268671 D 596153 CDS YP_004128682.1 319764745 10106173 complement(4271397..4272035) 1 NC_014910.1 KEGG: dac:Daci_2921 two component LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; LuxR family transcriptional regulator 4272035 10106173 Alide_4091 Alicycliphilus denitrificans BC LuxR family transcriptional regulator YP_004128682.1 4271397 R 596153 CDS YP_004128683.1 319764746 10106174 complement(4272049..4272981) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_0328 transcriptional regulator, LysR family; LysR family transcriptional regulator 4272981 10106174 Alide_4092 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128683.1 4272049 R 596153 CDS YP_004128684.1 319764747 10106175 4273216..4275414 1 NC_014910.1 TIGRFAM: malate synthase G; KEGG: dia:Dtpsy_0327 malate synthase G; PFAM: Malate synthase family protein; malate synthase g 4275414 10106175 Alide_4093 Alicycliphilus denitrificans BC malate synthase g YP_004128684.1 4273216 D 596153 CDS YP_004128685.1 319764748 10106176 4275491..4275775 1 NC_014910.1 manually curated; KEGG: ajs:Ajs_0337 hypothetical protein; hypothetical protein 4275775 10106176 Alide_4094 Alicycliphilus denitrificans BC hypothetical protein YP_004128685.1 4275491 D 596153 CDS YP_004128686.1 319764749 10106177 4275751..4275939 1 NC_014910.1 KEGG: dia:Dtpsy_0325 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 4275939 10106177 Alide_4095 Alicycliphilus denitrificans BC 4-oxalocrotonate tautomerase YP_004128686.1 4275751 D 596153 CDS YP_004128687.1 319764750 10106178 4275962..4276750 1 NC_014910.1 PFAM: protein of unknown function DUF169; KEGG: bbt:BBta_4610 hypothetical protein; hypothetical protein 4276750 10106178 Alide_4096 Alicycliphilus denitrificans BC hypothetical protein YP_004128687.1 4275962 D 596153 CDS YP_004128688.1 319764751 10106179 4276775..4277542 1 NC_014910.1 PFAM: glutamine amidotransferase class-II; KEGG: ajs:Ajs_0335 glutamine amidotransferase, class-II; glutamine amidotransferase class-ii 4277542 10106179 Alide_4097 Alicycliphilus denitrificans BC glutamine amidotransferase class-ii YP_004128688.1 4276775 D 596153 CDS YP_004128689.1 319764752 10106185 complement(4283380..4284399) 1 NC_014910.1 TIGRFAM: glutathione synthetase; KEGG: dia:Dtpsy_3256 glutathione synthetase; PFAM: glutathione synthetase ATP-binding; glutathione synthetase domain protein; glutathione synthetase 4284399 10106185 Alide_4098 Alicycliphilus denitrificans BC glutathione synthetase YP_004128689.1 4283380 R 596153 CDS YP_004128690.1 319764753 10106186 complement(4284359..4285600) 1 NC_014910.1 KEGG: dia:Dtpsy_3257 benzoate transporter; TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; benzoate transporter 4285600 10106186 Alide_4099 Alicycliphilus denitrificans BC benzoate transporter YP_004128690.1 4284359 R 596153 CDS YP_004128691.1 319764754 10106187 complement(4285692..4287620) 1 NC_014910.1 PFAM: K potassium transporter; KEGG: dia:Dtpsy_3258 K potassium transporter; potassium transporter 4287620 10106187 Alide_4100 Alicycliphilus denitrificans BC potassium transporter YP_004128691.1 4285692 R 596153 CDS YP_004128692.1 319764755 10106188 complement(4287657..4289000) 1 NC_014910.1 KEGG: dia:Dtpsy_3259 glutamate/cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; glutamate/cysteine ligase 4289000 10106188 Alide_4101 Alicycliphilus denitrificans BC glutamate/cysteine ligase YP_004128692.1 4287657 R 596153 CDS YP_004128693.1 319764756 10106189 complement(4289020..4290486) 1 NC_014910.1 PFAM: cation transporter; KEGG: dac:Daci_5998 cation transporter; cation transporter 4290486 10106189 Alide_4102 Alicycliphilus denitrificans BC cation transporter YP_004128693.1 4289020 R 596153 CDS YP_004128694.1 319764757 10106190 complement(4290488..4291963) 1 NC_014910.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dia:Dtpsy_3261 potassium transporter peripheral membrane component; TrkA domain-containing protein 4291963 10106190 Alide_4103 Alicycliphilus denitrificans BC TrkA domain-containing protein YP_004128694.1 4290488 R 596153 CDS YP_004128695.1 319764758 10106191 complement(4292024..4293358) 1 NC_014910.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: ajs:Ajs_3913 gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; gamma-glutamyl phosphate reductase 4293358 10106191 Alide_4104 Alicycliphilus denitrificans BC gamma-glutamyl phosphate reductase YP_004128695.1 4292024 R 596153 CDS YP_004128696.1 319764759 10106192 complement(4293376..4293711) 1 NC_014910.1 KEGG: pde:Pden_0614 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; s-adenosylmethionine:tRNA ribosyltransferase-isomerase 4293711 10106192 Alide_4105 Alicycliphilus denitrificans BC s-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_004128696.1 4293376 R 596153 CDS YP_004128697.1 319764760 10106193 complement(4293653..4294714) 1 NC_014910.1 KEGG: ank:AnaeK_1753 RimK domain protein ATP-grasp; rimk domain-containing protein 4294714 10106193 Alide_4106 Alicycliphilus denitrificans BC rimk domain-containing protein YP_004128697.1 4293653 R 596153 CDS YP_004128698.1 319764761 10106194 complement(4294711..4296054) 1 NC_014910.1 KEGG: cph:Cpha266_0056 peptidase M12A, astacin; PFAM: peptidase M12A astacin; SMART: peptidase metallopeptidase; peptidase m12a astacin 4296054 10106194 Alide_4107 Alicycliphilus denitrificans BC peptidase m12a astacin YP_004128698.1 4294711 R 596153 CDS YP_004128699.1 319764762 10106195 4296367..4296651 1 NC_014910.1 KEGG: dia:Dtpsy_3263 hypothetical protein; hypothetical protein 4296651 10106195 Alide_4108 Alicycliphilus denitrificans BC hypothetical protein YP_004128699.1 4296367 D 596153 CDS YP_004128700.1 319764763 10106196 complement(4296853..4297932) 1 NC_014910.1 KEGG: dia:Dtpsy_3264 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta 4297932 10106196 Alide_4109 Alicycliphilus denitrificans BC DNA polymerase III subunit delta YP_004128700.1 4296853 R 596153 CDS YP_004128701.1 319764764 10106197 complement(4297953..4298465) 1 NC_014910.1 PFAM: Rare lipoprotein B; KEGG: dia:Dtpsy_3265 rare lipoprotein B; rare lipoprotein b 4298465 10106197 Alide_4110 Alicycliphilus denitrificans BC rare lipoprotein b YP_004128701.1 4297953 R 596153 CDS YP_004128702.1 319764765 10106198 complement(4298465..4301170) 1 NC_014910.1 KEGG: ajs:Ajs_3917 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; leucyl-tRNA synthetase 4301170 10106198 Alide_4111 Alicycliphilus denitrificans BC leucyl-tRNA synthetase YP_004128702.1 4298465 R 596153 CDS YP_004128703.1 319764766 10106199 4301327..4302571 1 NC_014910.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ajs:Ajs_3919 MscS mechanosensitive ion channel; mscs mechanosensitive ion channel 4302571 10106199 Alide_4112 Alicycliphilus denitrificans BC mscs mechanosensitive ion channel YP_004128703.1 4301327 D 596153 CDS YP_004128704.1 319764767 10106200 4302876..4304402 1 NC_014910.1 PFAM: Aldehyde Dehydrogenase; KEGG: bmj:BMULJ_03133 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 4304402 10106200 Alide_4113 Alicycliphilus denitrificans BC aldehyde dehydrogenase YP_004128704.1 4302876 D 596153 CDS YP_004128705.1 319764768 10106202 complement(4305316..4307289) 1 NC_014910.1 KEGG: pna:Pnap_0735 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 4307289 10106202 Alide_4115 Alicycliphilus denitrificans BC sigma-54 factor interaction domain-containing protein YP_004128705.1 4305316 R 596153 CDS YP_004128706.1 319764769 10106203 4307657..4308139 1 NC_014910.1 KEGG: pna:Pnap_0736 cytochrome c-type protein; cytochrome c-type protein 4308139 10106203 Alide_4116 Alicycliphilus denitrificans BC cytochrome c-type protein YP_004128706.1 4307657 D 596153 CDS YP_004128707.1 319764770 10106204 4308554..4311130 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; GAF domain protein; EAL domain protein; KEGG: bxe:Bxe_C0015 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; diguanylate cyclase 4311130 10106204 Alide_4117 Alicycliphilus denitrificans BC diguanylate cyclase YP_004128707.1 4308554 D 596153 CDS YP_004128708.1 319764771 10106205 complement(4311137..4311556) 1 NC_014910.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_3920 biopolymer transport protein ExbD/TolR; biopolymer transport protein exbd/tolr 4311556 10106205 Alide_4118 Alicycliphilus denitrificans BC biopolymer transport protein exbd/tolr YP_004128708.1 4311137 R 596153 CDS YP_004128709.1 319764772 10106206 complement(4311563..4312216) 1 NC_014910.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_3269 MotA/TolQ/ExbB proton channel; mota/tolq/exbb proton channel 4312216 10106206 Alide_4119 Alicycliphilus denitrificans BC mota/tolq/exbb proton channel YP_004128709.1 4311563 R 596153 CDS YP_004128710.1 319764773 10106207 complement(4312224..4313045) 1 NC_014910.1 TIGRFAM: dihydrodipicolinate reductase; KEGG: ajs:Ajs_3922 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 4313045 10106207 Alide_4120 Alicycliphilus denitrificans BC dihydrodipicolinate reductase YP_004128710.1 4312224 R 596153 CDS YP_004128711.1 319764774 10106208 complement(4313100..4313654) 1 NC_014910.1 PFAM: SmpA/OmlA domain-containing protein; KEGG: dia:Dtpsy_3271 SmpA/OmlA domain protein; smpa/omla domain-containing protein 4313654 10106208 Alide_4121 Alicycliphilus denitrificans BC smpa/omla domain-containing protein YP_004128711.1 4313100 R 596153 CDS YP_004128712.1 319764775 10106209 4313754..4314173 1 NC_014910.1 PFAM: ferric-uptake regulator; KEGG: dia:Dtpsy_3272 ferric uptake regulator, Fur family; ferric-uptake regulator 4314173 10106209 Alide_4122 Alicycliphilus denitrificans BC ferric-uptake regulator YP_004128712.1 4313754 D 596153 CDS YP_004128713.1 319764776 10106210 complement(4314181..4315134) 1 NC_014910.1 PFAM: HPr serine kinase domain-containing protein; KEGG: dia:Dtpsy_3273 HPr kinase/phosphorylase; hpr serine kinase domain-containing protein 4315134 10106210 Alide_4123 Alicycliphilus denitrificans BC hpr serine kinase domain-containing protein YP_004128713.1 4314181 R 596153 CDS YP_004128714.1 319764777 10106211 complement(4315428..4315895) 1 NC_014910.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ajs:Ajs_3926 PTS IIA-like nitrogen-regulatory protein PtsN; phosphoenolpyruvate-dependent sugar phosphotransferase system eiia 2 4315895 10106211 Alide_4124 Alicycliphilus denitrificans BC phosphoenolpyruvate-dependent sugar phosphotransferase system eiia 2 YP_004128714.1 4315428 R 596153 CDS YP_004128715.1 319764778 10106212 complement(4316036..4316383) 1 NC_014910.1 KEGG: dia:Dtpsy_3275 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; ribosomal subunit interface protein 4316383 10106212 Alide_4125 Alicycliphilus denitrificans BC ribosomal subunit interface protein YP_004128715.1 4316036 R 596153 CDS YP_004128716.1 319764779 10106213 4316706..4317626 1 NC_014910.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: dia:Dtpsy_3276 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 4317626 10106213 Alide_4126 Alicycliphilus denitrificans BC phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_004128716.1 4316706 D 596153 CDS YP_004128717.1 319764780 10106214 complement(4317676..4318584) 1 NC_014910.1 KEGG: dia:Dtpsy_3279 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; thioredoxin 4318584 10106214 Alide_4127 Alicycliphilus denitrificans BC thioredoxin YP_004128717.1 4317676 R 596153 CDS YP_004128718.1 319764781 10106215 4318726..4319223 1 NC_014910.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: dia:Dtpsy_3282 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 4319223 10106215 Alide_4128 Alicycliphilus denitrificans BC phosphoribosylaminoimidazole carboxylase catalytic subunit YP_004128718.1 4318726 D 596153 CDS YP_004128719.1 319764782 10106216 4319220..4320389 1 NC_014910.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: dia:Dtpsy_3283 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase, atpase subunit 4320389 10106216 Alide_4129 Alicycliphilus denitrificans BC phosphoribosylaminoimidazole carboxylase, atpase subunit YP_004128719.1 4319220 D 596153 CDS YP_004128720.1 319764783 10106217 4320395..4321393 1 NC_014910.1 KEGG: ajs:Ajs_3936 translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain-containing protein; sua5/ycio/yrdc/ywlc family protein 4321393 10106217 Alide_4130 Alicycliphilus denitrificans BC sua5/ycio/yrdc/ywlc family protein YP_004128720.1 4320395 D 596153 CDS YP_004128721.1 319764784 10106218 4321457..4322413 1 NC_014910.1 KEGG: ajs:Ajs_3937 lipase; lipase 4322413 10106218 Alide_4131 Alicycliphilus denitrificans BC lipase YP_004128721.1 4321457 D 596153 CDS YP_004128722.1 319764785 10106219 complement(4322571..4323296) 1 NC_014910.1 KEGG: aav:Aave_2743 hypothetical protein; hypothetical protein 4323296 10106219 Alide_4132 Alicycliphilus denitrificans BC hypothetical protein YP_004128722.1 4322571 R 596153 CDS YP_004128723.1 319764786 10106220 complement(4323320..4324843) 1 NC_014910.1 KEGG: app:CAP2UW1_2151 ATPase; ATPase 4324843 10106220 Alide_4133 Alicycliphilus denitrificans BC ATPase YP_004128723.1 4323320 R 596153 CDS YP_004128724.1 319764787 10106221 complement(4324957..4326534) 1 NC_014910.1 KEGG: pna:Pnap_4127 hypothetical protein; hypothetical protein 4326534 10106221 Alide_4134 Alicycliphilus denitrificans BC hypothetical protein YP_004128724.1 4324957 R 596153 CDS YP_004128725.1 319764788 10106222 4326726..4327589 1 NC_014910.1 KEGG: bbt:BBta_1239 hypothetical protein; hypothetical protein 4327589 10106222 Alide_4135 Alicycliphilus denitrificans BC hypothetical protein YP_004128725.1 4326726 D 596153 CDS YP_004128726.1 319764789 10106223 complement(4327555..4327827) 1 NC_014910.1 KEGG: bvi:Bcep1808_0010 hypothetical protein; hypothetical protein 4327827 10106223 Alide_4136 Alicycliphilus denitrificans BC hypothetical protein YP_004128726.1 4327555 R 596153 CDS YP_004128727.1 319764790 10106224 4327967..4328263 1 NC_014910.1 KEGG: ppg:PputGB1_3382 hypothetical protein; hypothetical protein 4328263 10106224 Alide_4137 Alicycliphilus denitrificans BC hypothetical protein YP_004128727.1 4327967 D 596153 CDS YP_004128728.1 319764791 10106225 4328257..4328979 1 NC_014910.1 KEGG: rpf:Rpic12D_2698 hypothetical protein; hypothetical protein 4328979 10106225 Alide_4138 Alicycliphilus denitrificans BC hypothetical protein YP_004128728.1 4328257 D 596153 CDS YP_004128729.1 319764792 10106226 4328976..4330280 1 NC_014910.1 KEGG: xac:XAC3233 transposase; transposase 4330280 10106226 Alide_4139 Alicycliphilus denitrificans BC transposase YP_004128729.1 4328976 D 596153 CDS YP_004128730.1 319764793 10106227 4330411..4331499 1 NC_014910.1 KEGG: ajs:Ajs_3918 transposase, IS4 family protein; manually curated; PFAM: transposase IS4 family protein; transposase is4 family protein 4331499 10106227 Alide_4140 Alicycliphilus denitrificans BC transposase is4 family protein YP_004128730.1 4330411 D 596153 CDS YP_004128731.1 319764794 10106229 complement(4331822..4333528) 1 NC_014910.1 KEGG: aba:Acid345_1066 hypothetical protein; hypothetical protein 4333528 10106229 Alide_4142 Alicycliphilus denitrificans BC hypothetical protein YP_004128731.1 4331822 R 596153 CDS YP_004128732.1 319764795 10106230 complement(4333599..4334132) 1 NC_014910.1 KEGG: xac:XAC3234 hypothetical protein; hypothetical protein 4334132 10106230 Alide_4143 Alicycliphilus denitrificans BC hypothetical protein YP_004128732.1 4333599 R 596153 CDS YP_004128733.1 319764796 10106231 complement(4334243..4334938) 1 NC_014910.1 PFAM: OmpW family protein; KEGG: pna:Pnap_1827 OmpW family protein; ompw family protein 4334938 10106231 Alide_4144 Alicycliphilus denitrificans BC ompw family protein YP_004128733.1 4334243 R 596153 CDS YP_004128734.1 319764797 10106232 complement(4334967..4336526) 1 NC_014910.1 KEGG: pna:Pnap_1828 hypothetical protein; hypothetical protein 4336526 10106232 Alide_4145 Alicycliphilus denitrificans BC hypothetical protein YP_004128734.1 4334967 R 596153 CDS YP_004128735.1 319764798 10106233 complement(4336629..4338101) 1 NC_014910.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; KEGG: dia:Dtpsy_3288 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase 4338101 10106233 Alide_4146 Alicycliphilus denitrificans BC d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase YP_004128735.1 4336629 R 596153 CDS YP_004128736.1 319764799 10106234 4338177..4338905 1 NC_014910.1 PFAM: peptidase M22 glycoprotease; KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease; peptidase m22 glycoprotease 4338905 10106234 Alide_4147 Alicycliphilus denitrificans BC peptidase m22 glycoprotease YP_004128736.1 4338177 D 596153 CDS YP_004128737.1 319764800 10106235 4338902..4339378 1 NC_014910.1 KEGG: dia:Dtpsy_3290 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 4339378 10106235 Alide_4148 Alicycliphilus denitrificans BC ribosomal-protein-alanine acetyltransferase YP_004128737.1 4338902 D 596153 CDS YP_004128738.1 319764801 10106236 4339524..4340114 1 NC_014910.1 KEGG: dia:Dtpsy_3291 phage SPO1 DNA polymerase-related protein; phage spo1 DNA polymerase-like protein 4340114 10106236 Alide_4149 Alicycliphilus denitrificans BC phage spo1 DNA polymerase-like protein YP_004128738.1 4339524 D 596153 CDS YP_004128739.1 319764802 10106237 4340285..4341271 1 NC_014910.1 KEGG: dac:Daci_0973 magnesium and cobalt transport protein CorA; TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; magnesium and cobalt transport protein cora 4341271 10106237 Alide_4150 Alicycliphilus denitrificans BC magnesium and cobalt transport protein cora YP_004128739.1 4340285 D 596153 CDS YP_004128740.1 319764803 10106238 4341566..4341775 1 NC_014910.1 KEGG: dre:554779 odorant receptor, family C, subfamily 103, member 2; hypothetical protein 4341775 10106238 Alide_4151 Alicycliphilus denitrificans BC hypothetical protein YP_004128740.1 4341566 D 596153 CDS YP_004128741.1 319764804 10106239 4342075..4342257 1 NC_014910.1 KEGG: rle:pRL100018 NTP-binding transposase-related protein; hypothetical protein 4342257 10106239 Alide_4152 Alicycliphilus denitrificans BC hypothetical protein YP_004128741.1 4342075 D 596153 CDS YP_004128742.1 319764805 10106240 complement(4342326..4343093) 1 NC_014910.1 TIGRFAM: MTA/SAH nucleosidase; KEGG: dia:Dtpsy_3298 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1; mta/sah nucleosidase 4343093 10106240 Alide_4153 Alicycliphilus denitrificans BC mta/sah nucleosidase YP_004128742.1 4342326 R 596153 CDS YP_004128743.1 319764806 10106241 complement(4343153..4344829) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 4344829 10106241 Alide_4154 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004128743.1 4343153 R 596153 CDS YP_004128744.1 319764807 10106242 complement(4344920..4346332) 1 NC_014910.1 KEGG: ctt:CtCNB1_0258 NAD(P) transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase beta subunit; nad(p)(+) transhydrogenase (ab-specific) 4346332 10106242 Alide_4155 Alicycliphilus denitrificans BC nad(p)(+) transhydrogenase (ab-specific) YP_004128744.1 4344920 R 596153 CDS YP_004128745.1 319764808 10106243 complement(4346369..4347979) 1 NC_014910.1 KEGG: bpt:Bpet4170 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: alanine dehydrogenase/PNT domain protein; NAD(P) transhydrogenase subunit alpha 4347979 10106243 Alide_4156 Alicycliphilus denitrificans BC NAD(P) transhydrogenase subunit alpha YP_004128745.1 4346369 R 596153 CDS YP_004128746.1 319764809 10106244 complement(4348034..4348753) 1 NC_014910.1 KEGG: dia:Dtpsy_3302 hypothetical protein; hypothetical protein 4348753 10106244 Alide_4157 Alicycliphilus denitrificans BC hypothetical protein YP_004128746.1 4348034 R 596153 CDS YP_004128747.1 319764810 10106245 complement(4348877..4349941) 1 NC_014910.1 TIGRFAM: fructose-bisphosphate aldolase, class II, Calvin cycle subtype; ketose-bisphosphate aldolase; KEGG: dia:Dtpsy_3304 fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase, class ii, calvin cycle subtype 4349941 10106245 Alide_4158 Alicycliphilus denitrificans BC fructose-bisphosphate aldolase, class ii, calvin cycle subtype YP_004128747.1 4348877 R 596153 CDS YP_004128748.1 319764811 10106246 complement(4350079..4351521) 1 NC_014910.1 TIGRFAM: pyruvate kinase; KEGG: dia:Dtpsy_3305 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 4351521 10106246 Alide_4159 Alicycliphilus denitrificans BC pyruvate kinase YP_004128748.1 4350079 R 596153 CDS YP_004128749.1 319764812 10106247 complement(4351597..4352979) 1 NC_014910.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: dia:Dtpsy_3306 peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; peptidase m24 4352979 10106247 Alide_4160 Alicycliphilus denitrificans BC peptidase m24 YP_004128749.1 4351597 R 596153 CDS YP_004128750.1 319764813 10106248 complement(4353307..4354086) 1 NC_014910.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_0802 enoyl-CoA hydratase; enoyl-CoA hydratase 4354086 10106248 Alide_4161 Alicycliphilus denitrificans BC enoyl-CoA hydratase YP_004128750.1 4353307 R 596153 CDS YP_004128751.1 319764814 10106249 complement(4354086..4355057) 1 NC_014910.1 KEGG: dac:Daci_0801 hypothetical protein; hypothetical protein 4355057 10106249 Alide_4162 Alicycliphilus denitrificans BC hypothetical protein YP_004128751.1 4354086 R 596153 CDS YP_004128752.1 319764815 10106250 complement(4355058..4356236) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: dac:Daci_0800 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 4356236 10106250 Alide_4163 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004128752.1 4355058 R 596153 CDS YP_004128753.1 319764816 10106251 complement(4356247..4357410) 1 NC_014910.1 KEGG: rme:Rmet_5111 thiolase; thiolase 4357410 10106251 Alide_4164 Alicycliphilus denitrificans BC thiolase YP_004128753.1 4356247 R 596153 CDS YP_004128754.1 319764817 10106252 complement(4357407..4357808) 1 NC_014910.1 PFAM: protein of unknown function DUF35; KEGG: rme:Rmet_5112 hypothetical protein; hypothetical protein 4357808 10106252 Alide_4165 Alicycliphilus denitrificans BC hypothetical protein YP_004128754.1 4357407 R 596153 CDS YP_004128755.1 319764818 10106253 complement(4357813..4358820) 1 NC_014910.1 KEGG: rme:Rmet_5113 extra-cytoplasmic solute receptor; ABC transporter substrate-binding protein 4358820 10106253 Alide_4166 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128755.1 4357813 R 596153 CDS YP_004128756.1 319764819 10106254 complement(4358980..4359888) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_5106 LysR family transcriptional regulator; LysR family transcriptional regulator 4359888 10106254 Alide_4167 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128756.1 4358980 R 596153 CDS YP_004128757.1 319764820 10106255 complement(4359894..4360670) 1 NC_014910.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: ajs:Ajs_3958 nucleotidyl transferase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 4360670 10106255 Alide_4168 Alicycliphilus denitrificans BC 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004128757.1 4359894 R 596153 CDS YP_004128758.1 319764821 10106256 4360745..4362781 1 NC_014910.1 manually curated; TIGRFAM: transketolase; KEGG: dia:Dtpsy_3309 transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; transketolase 4362781 10106256 Alide_4169 Alicycliphilus denitrificans BC transketolase YP_004128758.1 4360745 D 596153 CDS YP_004128759.1 319764822 10106257 4362813..4363814 1 NC_014910.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ajs:Ajs_3960 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type i 4363814 10106257 Alide_4170 Alicycliphilus denitrificans BC glyceraldehyde-3-phosphate dehydrogenase, type i YP_004128759.1 4362813 D 596153 CDS YP_004128760.1 319764823 10106258 complement(4363976..4364320) 1 NC_014910.1 KEGG: dia:Dtpsy_3312 ribosomal subunit interface protein, putative; ribosomal subunit interface protein 4364320 10106258 Alide_4171 Alicycliphilus denitrificans BC ribosomal subunit interface protein YP_004128760.1 4363976 R 596153 CDS YP_004128761.1 319764824 10106259 4364494..4365381 1 NC_014910.1 PFAM: peptidase C26; KEGG: dia:Dtpsy_3313 peptidase C26; peptidase c26 4365381 10106259 Alide_4172 Alicycliphilus denitrificans BC peptidase c26 YP_004128761.1 4364494 D 596153 CDS YP_004128762.1 319764825 10106260 complement(4365382..4366266) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2148 LysR family transcriptional regulator; LysR family transcriptional regulator 4366266 10106260 Alide_4173 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128762.1 4365382 R 596153 CDS YP_004128763.1 319764826 10106261 4366387..4367277 1 NC_014910.1 PFAM: amidohydrolase 2; KEGG: pol:Bpro_2147 amidohydrolase 2; amidohydrolase 4367277 10106261 Alide_4174 Alicycliphilus denitrificans BC amidohydrolase YP_004128763.1 4366387 D 596153 CDS YP_004128764.1 319764827 10106262 4367320..4368150 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_2146 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 4368150 10106262 Alide_4175 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004128764.1 4367320 D 596153 CDS YP_004128765.1 319764828 10106263 4368207..4369178 1 NC_014910.1 KEGG: pol:Bpro_2145 hypothetical protein; hypothetical protein 4369178 10106263 Alide_4176 Alicycliphilus denitrificans BC hypothetical protein YP_004128765.1 4368207 D 596153 CDS YP_004128766.1 319764829 10106264 4369202..4369723 1 NC_014910.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_2144 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 4369723 10106264 Alide_4177 Alicycliphilus denitrificans BC carboxymuconolactone decarboxylase YP_004128766.1 4369202 D 596153 CDS YP_004128767.1 319764830 10106265 4369720..4370433 1 NC_014910.1 KEGG: pol:Bpro_2143 hypothetical protein; hypothetical protein 4370433 10106265 Alide_4178 Alicycliphilus denitrificans BC hypothetical protein YP_004128767.1 4369720 D 596153 CDS YP_004128768.1 319764831 10106266 complement(4370458..4371672) 1 NC_014910.1 KEGG: dac:Daci_2267 PepSY-associated TM helix domain-containing protein; pepsy-associated tm helix domain-containing protein 4371672 10106266 Alide_4179 Alicycliphilus denitrificans BC pepsy-associated tm helix domain-containing protein YP_004128768.1 4370458 R 596153 CDS YP_004128769.1 319764832 10106267 complement(4371672..4373879) 1 NC_014910.1 KEGG: ctt:CtCNB1_3496 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; tonb-dependent siderophore receptor 4373879 10106267 Alide_4180 Alicycliphilus denitrificans BC tonb-dependent siderophore receptor YP_004128769.1 4371672 R 596153 CDS YP_004128770.1 319764833 10106268 complement(4374020..4374493) 1 NC_014910.1 KEGG: dia:Dtpsy_3314 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, fkbp-type 4374493 10106268 Alide_4181 Alicycliphilus denitrificans BC peptidylprolyl isomerase, fkbp-type YP_004128770.1 4374020 R 596153 CDS YP_004128771.1 319764834 10106269 complement(4374548..4375519) 1 NC_014910.1 KEGG: ctt:CtCNB1_4653 TctC; hypothetical protein 4375519 10106269 Alide_4182 Alicycliphilus denitrificans BC hypothetical protein YP_004128771.1 4374548 R 596153 CDS YP_004128772.1 319764835 10106270 complement(4375551..4375904) 1 NC_014910.1 KEGG: ctt:CtCNB1_4654 hypothetical protein; hypothetical protein 4375904 10106270 Alide_4183 Alicycliphilus denitrificans BC hypothetical protein YP_004128772.1 4375551 R 596153 CDS YP_004128773.1 319764836 10106271 complement(4375923..4377284) 1 NC_014910.1 PFAM: protein of unknown function DUF1446; KEGG: ctt:CtCNB1_4655 NAD-dependent aldehyde dehydrogenase; hypothetical protein 4377284 10106271 Alide_4184 Alicycliphilus denitrificans BC hypothetical protein YP_004128773.1 4375923 R 596153 CDS YP_004128774.1 319764837 10106272 4377393..4378283 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ctt:CtCNB1_4656 transcriptional regulator, LysR family; LysR family transcriptional regulator 4378283 10106272 Alide_4185 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128774.1 4377393 D 596153 CDS YP_004128775.1 319764838 10106273 complement(4378383..4378859) 1 NC_014910.1 PFAM: transcription activator effector binding; KEGG: aav:Aave_4607 transcription activator, effector binding; transcription activator effector binding protein 4378859 10106273 Alide_4186 Alicycliphilus denitrificans BC transcription activator effector binding protein YP_004128775.1 4378383 R 596153 CDS YP_004128776.1 319764839 10106274 complement(4379161..4380216) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3318 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 4380216 10106274 Alide_4187 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004128776.1 4379161 R 596153 CDS YP_004128777.1 319764840 10106275 complement(4380313..4380936) 1 NC_014910.1 KEGG: dia:Dtpsy_3319 hypothetical protein; hypothetical protein 4380936 10106275 Alide_4188 Alicycliphilus denitrificans BC hypothetical protein YP_004128777.1 4380313 R 596153 CDS YP_004128778.1 319764841 10106276 complement(4380964..4381710) 1 NC_014910.1 PFAM: DTW domain containing protein; KEGG: ajs:Ajs_3970 DTW domain-containing protein; dtw domain-containing protein 4381710 10106276 Alide_4189 Alicycliphilus denitrificans BC dtw domain-containing protein YP_004128778.1 4380964 R 596153 CDS YP_004128779.1 319764842 10106277 4381888..4382730 1 NC_014910.1 KEGG: ajs:Ajs_3971 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 4382730 10106277 Alide_4190 Alicycliphilus denitrificans BC regulatory protein iclr YP_004128779.1 4381888 D 596153 CDS YP_004128780.1 319764843 10106278 4382727..4383878 1 NC_014910.1 KEGG: ajs:Ajs_3972 thiolase; thiolase 4383878 10106278 Alide_4191 Alicycliphilus denitrificans BC thiolase YP_004128780.1 4382727 D 596153 CDS YP_004128781.1 319764844 10106279 4383881..4384240 1 NC_014910.1 PFAM: protein of unknown function DUF35; KEGG: ajs:Ajs_3973 hypothetical protein; hypothetical protein 4384240 10106279 Alide_4192 Alicycliphilus denitrificans BC hypothetical protein YP_004128781.1 4383881 D 596153 CDS YP_004128782.1 319764845 10106280 4384263..4385240 1 NC_014910.1 KEGG: dia:Dtpsy_3324 hypothetical protein; hypothetical protein 4385240 10106280 Alide_4193 Alicycliphilus denitrificans BC hypothetical protein YP_004128782.1 4384263 D 596153 CDS YP_004128783.1 319764846 10106281 4385249..4387336 1 NC_014910.1 PFAM: CoA-binding domain protein; ATP-grasp domain protein; KEGG: dia:Dtpsy_3325 CoA-binding domain protein; CoA-binding protein 4387336 10106281 Alide_4194 Alicycliphilus denitrificans BC CoA-binding protein YP_004128783.1 4385249 D 596153 CDS YP_004128784.1 319764847 10106282 complement(4387385..4388083) 1 NC_014910.1 PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_3976 glutathione S-transferase domain-containing protein; glutathione s-transferase domain-containing protein 4388083 10106282 Alide_4195 Alicycliphilus denitrificans BC glutathione s-transferase domain-containing protein YP_004128784.1 4387385 R 596153 CDS YP_004128785.1 319764848 10106283 complement(4388086..4388847) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_3977 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase sdr 4388847 10106283 Alide_4196 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004128785.1 4388086 R 596153 CDS YP_004128786.1 319764849 10106284 complement(4388875..4389276) 1 NC_014910.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_3978 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4389276 10106284 Alide_4197 Alicycliphilus denitrificans BC glyoxalase/bleomycin resistance protein/dioxygenase YP_004128786.1 4388875 R 596153 CDS YP_004128787.1 319764850 10106285 complement(4389321..4392242) 1 NC_014910.1 TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; SWIB/MDM2 domain-containing protein; KEGG: ajs:Ajs_3990 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; SWIB domain; DNA topoisomerase iii 4392242 10106285 Alide_4198 Alicycliphilus denitrificans BC DNA topoisomerase iii YP_004128787.1 4389321 R 596153 CDS YP_004128788.1 319764851 10106286 4392343..4392894 1 NC_014910.1 KEGG: dia:Dtpsy_3340 nuclear protein SET; PFAM: nuclear protein SET; SMART: nuclear protein SET; nuclear protein set 4392894 10106286 Alide_4199 Alicycliphilus denitrificans BC nuclear protein set YP_004128788.1 4392343 D 596153 CDS YP_004128789.1 319764852 10106287 4392891..4393721 1 NC_014910.1 KEGG: dia:Dtpsy_3341 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; biotin--acetyl-CoA-carboxylase ligase 4393721 10106287 Alide_4200 Alicycliphilus denitrificans BC biotin--acetyl-CoA-carboxylase ligase YP_004128789.1 4392891 D 596153 CDS YP_004128790.1 319764853 10106288 4393878..4394549 1 NC_014910.1 PFAM: Sporulation domain-containing protein; KEGG: dia:Dtpsy_3342 sporulation domain protein; sporulation domain-containing protein 4394549 10106288 Alide_4201 Alicycliphilus denitrificans BC sporulation domain-containing protein YP_004128790.1 4393878 D 596153 CDS YP_004128791.1 319764854 10106289 complement(4394557..4395594) 1 NC_014910.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_2134 alcohol dehydrogenase; alcohol dehydrogenase 4395594 10106289 Alide_4202 Alicycliphilus denitrificans BC alcohol dehydrogenase YP_004128791.1 4394557 R 596153 CDS YP_004128792.1 319764855 10106290 complement(4395591..4396046) 1 NC_014910.1 PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_B4755 MaoC-like dehydratase; MaoC domain-containing protein 4396046 10106290 Alide_4203 Alicycliphilus denitrificans BC MaoC domain-containing protein YP_004128792.1 4395591 R 596153 CDS YP_004128793.1 319764856 10106291 complement(4396033..4396503) 1 NC_014910.1 KEGG: reu:Reut_B4756 hypothetical protein; hypothetical protein 4396503 10106291 Alide_4204 Alicycliphilus denitrificans BC hypothetical protein YP_004128793.1 4396033 R 596153 CDS YP_004128794.1 319764857 10106292 complement(4396514..4397710) 1 NC_014910.1 PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2466 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 4397710 10106292 Alide_4205 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128794.1 4396514 R 596153 CDS YP_004128795.1 319764858 10106293 complement(4397770..4399752) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bur:Bcep18194_C7155 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 4399752 10106293 Alide_4206 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004128795.1 4397770 R 596153 CDS YP_004128796.1 319764859 10106294 4399884..4400390 1 NC_014910.1 KEGG: vei:Veis_4103 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; regulatory protein marr 4400390 10106294 Alide_4207 Alicycliphilus denitrificans BC regulatory protein marr YP_004128796.1 4399884 D 596153 CDS YP_004128797.1 319764860 10106295 4400472..4400843 1 NC_014910.1 KEGG: afw:Anae109_4130 hypothetical protein; hypothetical protein 4400843 10106295 Alide_4208 Alicycliphilus denitrificans BC hypothetical protein YP_004128797.1 4400472 D 596153 CDS YP_004128798.1 319764861 10106296 4401111..4401809 1 NC_014910.1 PFAM: RES domain protein; KEGG: azo:azo2874 hypothetical protein; res domain-containing protein 4401809 10106296 Alide_4209 Alicycliphilus denitrificans BC res domain-containing protein YP_004128798.1 4401111 D 596153 CDS YP_004128799.1 319764862 10106297 complement(4401820..4402893) 1 NC_014910.1 PFAM: NAD/NADP octopine/nopaline dehydrogenase; Ketopantoate reductase ApbA/PanE domain protein; KEGG: vap:Vapar_0420 NAD/NADP octopine/nopaline dehydrogenase; nad/nadp octopine/nopaline dehydrogenase 4402893 10106297 Alide_4210 Alicycliphilus denitrificans BC nad/nadp octopine/nopaline dehydrogenase YP_004128799.1 4401820 R 596153 CDS YP_004128800.1 319764863 10106298 complement(4402890..4403918) 1 NC_014910.1 KEGG: vap:Vapar_0421 hypothetical protein; hypothetical protein 4403918 10106298 Alide_4211 Alicycliphilus denitrificans BC hypothetical protein YP_004128800.1 4402890 R 596153 CDS YP_004128801.1 319764864 10106299 complement(4403950..4405395) 1 NC_014910.1 KEGG: dia:Dtpsy_3348 histidine kinase; PFAM: Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; two-component sensor kinase domain-containing protein 4405395 10106299 Alide_4212 Alicycliphilus denitrificans BC two-component sensor kinase domain-containing protein YP_004128801.1 4403950 R 596153 CDS YP_004128802.1 319764865 10106300 complement(4405461..4406135) 1 NC_014910.1 KEGG: ajs:Ajs_3999 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 4406135 10106300 Alide_4213 Alicycliphilus denitrificans BC response regulator receiver YP_004128802.1 4405461 R 596153 CDS YP_004128803.1 319764866 10106301 complement(4406263..4407393) 1 NC_014910.1 KEGG: bcj:BCAL0446 2-aminoethylphosphonate--pyruvate transaminase; TIGRFAM: 2-aminoethylphosphonate/pyruvate transaminase; 2-aminoethylphosphonate aminotransferase; PFAM: aminotransferase class V; 2-aminoethylphosphonate--pyruvate transaminase 4407393 10106301 Alide_4214 Alicycliphilus denitrificans BC 2-aminoethylphosphonate--pyruvate transaminase YP_004128803.1 4406263 R 596153 CDS YP_004128804.1 319764867 10106302 complement(4407428..4409161) 1 NC_014910.1 KEGG: reu:Reut_B5872 binding-protein dependent transport system inner membrane protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; 2-aminoethylphosphonate abc transport system, permease protein 4409161 10106302 Alide_4215 Alicycliphilus denitrificans BC 2-aminoethylphosphonate abc transport system, permease protein YP_004128804.1 4407428 R 596153 CDS YP_004128805.1 319764868 10106303 complement(4409158..4410291) 1 NC_014910.1 TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding protein component; PFAM: ABC transporter related; KEGG: reu:Reut_B5873 ABC transporter related; SMART: AAA ATPase; 2-aminoethylphosphonate ABC transporter ATP-binding protein 4410291 10106303 Alide_4216 Alicycliphilus denitrificans BC 2-aminoethylphosphonate ABC transporter ATP-binding protein YP_004128805.1 4409158 R 596153 CDS YP_004128806.1 319764869 10106304 complement(4410369..4411406) 1 NC_014910.1 KEGG: reu:Reut_B5874 extracellular solute-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: extracellular solute-binding protein family 1; 2-aminoethylphosphonate ABC transporter substrate-binding protein 4411406 10106304 Alide_4217 Alicycliphilus denitrificans BC 2-aminoethylphosphonate ABC transporter substrate-binding protein YP_004128806.1 4410369 R 596153 CDS YP_004128807.1 319764870 10106305 4411549..4412277 1 NC_014910.1 TIGRFAM: phosphonate utilization associated transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; KEGG: reu:Reut_B5875 GntR family transcriptional regulator; SMART: regulatory protein GntR HTH; phosphonate utilization associated transcriptional regulator 4412277 10106305 Alide_4218 Alicycliphilus denitrificans BC phosphonate utilization associated transcriptional regulator YP_004128807.1 4411549 D 596153 CDS YP_004128808.1 319764871 10106306 4412279..4413514 1 NC_014910.1 KEGG: reu:Reut_B5876 type I phosphodiesterase/nucleotide pyrophosphatase; TIGRFAM: phosphonoacetate hydrolase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; phosphonoacetate hydrolase 4413514 10106306 Alide_4219 Alicycliphilus denitrificans BC phosphonoacetate hydrolase YP_004128808.1 4412279 D 596153 CDS YP_004128809.1 319764872 10106307 4413545..4414993 1 NC_014910.1 KEGG: cti:RALTA_B0682 NAD+ dependent acetaldehyde dehydrogenase; TIGRFAM: phosphonoacetaldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; phosphonoacetaldehyde dehydrogenase 4414993 10106307 Alide_4220 Alicycliphilus denitrificans BC phosphonoacetaldehyde dehydrogenase YP_004128809.1 4413545 D 596153 CDS YP_004128810.1 319764873 10106308 4414999..4415538 1 NC_014910.1 TIGRFAM: phosphonate degradation operons associated HDIG domain protein; KEGG: vei:Veis_1186 HD phosphohydrolase-like protein; phosphonate degradation operons associated hdig domain-containing protein 4415538 10106308 Alide_4221 Alicycliphilus denitrificans BC phosphonate degradation operons associated hdig domain-containing protein YP_004128810.1 4414999 D 596153 CDS YP_004128811.1 319764874 10106309 4415636..4417024 1 NC_014910.1 KEGG: bcm:Bcenmc03_3163 aminophosphonate oxidoreductase; TIGRFAM: aminophosphonate oxidoreductase; PFAM: FAD dependent oxidoreductase; aminophosphonate oxidoreductase 4417024 10106309 Alide_4222 Alicycliphilus denitrificans BC aminophosphonate oxidoreductase YP_004128811.1 4415636 D 596153 CDS YP_004128812.1 319764875 10106310 complement(4417163..4418239) 1 NC_014910.1 TIGRFAM: alanine racemase; KEGG: tmz:Tmz1t_3995 alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 4418239 10106310 Alide_4223 Alicycliphilus denitrificans BC alanine racemase YP_004128812.1 4417163 R 596153 CDS YP_004128813.1 319764876 10106311 complement(4418236..4419546) 1 NC_014910.1 PFAM: FAD dependent oxidoreductase; KEGG: dac:Daci_3117 D-amino acid dehydrogenase small subunit; FAD-dependent oxidoreductase 4419546 10106311 Alide_4224 Alicycliphilus denitrificans BC FAD-dependent oxidoreductase YP_004128813.1 4418236 R 596153 CDS YP_004128814.1 319764877 10106312 4419673..4420185 1 NC_014910.1 KEGG: vap:Vapar_3966 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein 4420185 10106312 Alide_4225 Alicycliphilus denitrificans BC transcription regulator asnc-type-like protein YP_004128814.1 4419673 D 596153 CDS YP_004128815.1 319764878 10106313 complement(4420170..4420649) 1 NC_014910.1 PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 MarR family transcriptional regulator; regulatory protein marr 4420649 10106313 Alide_4226 Alicycliphilus denitrificans BC regulatory protein marr YP_004128815.1 4420170 R 596153 CDS YP_004128816.1 319764879 10106314 4420796..4421905 1 NC_014910.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: dia:Dtpsy_3351 RecA protein; SMART: AAA ATPase; reca protein 4421905 10106314 Alide_4227 Alicycliphilus denitrificans BC reca protein YP_004128816.1 4420796 D 596153 CDS YP_004128817.1 319764880 10106315 4421986..4422444 1 NC_014910.1 KEGG: dia:Dtpsy_3352 regulatory protein RecX; regulatory protein recx 4422444 10106315 Alide_4228 Alicycliphilus denitrificans BC regulatory protein recx YP_004128817.1 4421986 D 596153 CDS YP_004128818.1 319764881 10106316 complement(4422500..4424794) 1 NC_014910.1 PFAM: protein of unknown function DUF1631; KEGG: dia:Dtpsy_3353 hypothetical protein; hypothetical protein 4424794 10106316 Alide_4229 Alicycliphilus denitrificans BC hypothetical protein YP_004128818.1 4422500 R 596153 CDS YP_004128819.1 319764882 10106317 complement(4424851..4425804) 1 NC_014910.1 KEGG: dia:Dtpsy_3354 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein secf 4425804 10106317 Alide_4230 Alicycliphilus denitrificans BC protein-export membrane protein secf YP_004128819.1 4424851 R 596153 CDS YP_004128820.1 319764883 10106318 complement(4425816..4427711) 1 NC_014910.1 KEGG: dia:Dtpsy_3355 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein secd 4427711 10106318 Alide_4231 Alicycliphilus denitrificans BC protein-export membrane protein secd YP_004128820.1 4425816 R 596153 CDS YP_004128821.1 319764884 10106319 complement(4427794..4428126) 1 NC_014910.1 KEGG: dia:Dtpsy_3356 preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; preprotein translocase, yajc subunit 4428126 10106319 Alide_4232 Alicycliphilus denitrificans BC preprotein translocase, yajc subunit YP_004128821.1 4427794 R 596153 CDS YP_004128822.1 319764885 10106320 complement(4428330..4431947) 1 NC_014910.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: ajs:Ajs_4008 indolepyruvate ferredoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase, catalytic domain-containing protein 4431947 10106320 Alide_4233 Alicycliphilus denitrificans BC pyruvate/ketoisovalerate oxidoreductase, catalytic domain-containing protein YP_004128822.1 4428330 R 596153 CDS YP_004128823.1 319764886 10106321 4432127..4432600 1 NC_014910.1 KEGG: dia:Dtpsy_3359 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; transcription regulator asnc-type-like protein 4432600 10106321 Alide_4234 Alicycliphilus denitrificans BC transcription regulator asnc-type-like protein YP_004128823.1 4432127 D 596153 CDS YP_004128824.1 319764887 10106322 4432742..4434451 1 NC_014910.1 PFAM: protein of unknown function DUF894 DitE; KEGG: dia:Dtpsy_3362 protein of unknown function DUF894 DitE; hypothetical protein 4434451 10106322 Alide_4235 Alicycliphilus denitrificans BC hypothetical protein YP_004128824.1 4432742 D 596153 CDS YP_004128825.1 319764888 10106323 complement(4434560..4435663) 1 NC_014910.1 PFAM: MltA domain protein; 3D domain-containing protein; KEGG: dia:Dtpsy_3363 MltA domain protein; MltA domain-containing protein 4435663 10106323 Alide_4236 Alicycliphilus denitrificans BC MltA domain-containing protein YP_004128825.1 4434560 R 596153 CDS YP_004128826.1 319764889 10106324 4435692..4435814 1 NC_014910.1 KEGG: adg:Adeg_1325 hypothetical protein; hypothetical protein 4435814 10106324 Alide_4237 Alicycliphilus denitrificans BC hypothetical protein YP_004128826.1 4435692 D 596153 CDS YP_004128827.1 319764890 10106325 4435942..4436586 1 NC_014910.1 PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_3364 OmpA/MotB domain protein; ompa/motb domain-containing protein 4436586 10106325 Alide_4238 Alicycliphilus denitrificans BC ompa/motb domain-containing protein YP_004128827.1 4435942 D 596153 CDS YP_004128828.1 319764891 10106326 complement(4436644..4437279) 1 NC_014910.1 KEGG: ajs:Ajs_4015 response regulator receiver protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; response regulator receiver 4437279 10106326 Alide_4239 Alicycliphilus denitrificans BC response regulator receiver YP_004128828.1 4436644 R 596153 CDS YP_004128829.1 319764892 10106327 complement(4437279..4439372) 1 NC_014910.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dia:Dtpsy_3366 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; pas sensor protein 4439372 10106327 Alide_4240 Alicycliphilus denitrificans BC pas sensor protein YP_004128829.1 4437279 R 596153 CDS YP_004128830.1 319764893 10106328 complement(4439396..4440211) 1 NC_014910.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dia:Dtpsy_3367 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein n-acyltransferase 4440211 10106328 Alide_4241 Alicycliphilus denitrificans BC nitrilase/cyanide hydratase and apolipoprotein n-acyltransferase YP_004128830.1 4439396 R 596153 CDS YP_004128831.1 319764894 10106329 complement(4440208..4444278) 1 NC_014910.1 KEGG: dia:Dtpsy_3368 hypothetical protein; hypothetical protein 4444278 10106329 Alide_4242 Alicycliphilus denitrificans BC hypothetical protein YP_004128831.1 4440208 R 596153 CDS YP_004128832.1 319764895 10106330 4444372..4447119 1 NC_014910.1 KEGG: dia:Dtpsy_3369 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: GlnD PII-uridylyltransferase; glutamate-ammonia ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 4447119 10106330 Alide_4243 Alicycliphilus denitrificans BC (glutamate--ammonia-ligase) adenylyltransferase YP_004128832.1 4444372 D 596153 CDS YP_004128833.1 319764896 10106331 4447348..4448490 1 NC_014910.1 KEGG: dia:Dtpsy_3372 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; efflux transporter, rnd family, mfp subunit 4448490 10106331 Alide_4244 Alicycliphilus denitrificans BC efflux transporter, rnd family, mfp subunit YP_004128833.1 4447348 D 596153 CDS YP_004128834.1 319764897 10106332 4448503..4451562 1 NC_014910.1 PFAM: acriflavin resistance protein; KEGG: ajs:Ajs_4023 acriflavin resistance protein; acriflavin resistance protein 4451562 10106332 Alide_4245 Alicycliphilus denitrificans BC acriflavin resistance protein YP_004128834.1 4448503 D 596153 CDS YP_004128835.1 319764898 10106333 complement(4451956..4452570) 1 NC_014910.1 PFAM: Glutathione S-transferase domain; KEGG: dia:Dtpsy_3375 glutathione S-transferase domain protein; glutathione s-transferase domain-containing protein 4452570 10106333 Alide_4246 Alicycliphilus denitrificans BC glutathione s-transferase domain-containing protein YP_004128835.1 4451956 R 596153 CDS YP_004128836.1 319764899 10106334 4452683..4454062 1 NC_014910.1 KEGG: dia:Dtpsy_3376 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain-containing protein; fumarate lyase; adenylosuccinate lyase 4454062 10106334 Alide_4247 Alicycliphilus denitrificans BC adenylosuccinate lyase YP_004128836.1 4452683 D 596153 CDS YP_004128837.1 319764900 10106335 4454132..4454692 1 NC_014910.1 PFAM: YaeQ family protein; KEGG: dia:Dtpsy_3377 YaeQ family protein; yaeq family protein 4454692 10106335 Alide_4248 Alicycliphilus denitrificans BC yaeq family protein YP_004128837.1 4454132 D 596153 CDS YP_004128838.1 319764901 10106336 complement(4454963..4455268) 1 NC_014910.1 KEGG: dia:Dtpsy_3378 hypothetical protein; hypothetical protein 4455268 10106336 Alide_4249 Alicycliphilus denitrificans BC hypothetical protein YP_004128838.1 4454963 R 596153 CDS YP_004128839.1 319764902 10106337 complement(4455309..4455713) 1 NC_014910.1 PFAM: protein of unknown function DUF1289; KEGG: dia:Dtpsy_3379 protein of unknown function DUF1289; hypothetical protein 4455713 10106337 Alide_4250 Alicycliphilus denitrificans BC hypothetical protein YP_004128839.1 4455309 R 596153 CDS YP_004128840.1 319764903 10106338 4456121..4456858 1 NC_014910.1 PFAM: Integral membrane protein TerC; KEGG: ajs:Ajs_4030 integral membrane protein TerC; integral membrane protein TerC 4456858 10106338 Alide_4251 Alicycliphilus denitrificans BC integral membrane protein TerC YP_004128840.1 4456121 D 596153 CDS YP_004128841.1 319764904 10106339 4456893..4457363 1 NC_014910.1 KEGG: ajs:Ajs_4031 hypothetical protein; hypothetical protein 4457363 10106339 Alide_4252 Alicycliphilus denitrificans BC hypothetical protein YP_004128841.1 4456893 D 596153 CDS YP_004128842.1 319764905 10106340 complement(4457365..4458285) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_4070 LysR family transcriptional regulator; LysR family transcriptional regulator 4458285 10106340 Alide_4253 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128842.1 4457365 R 596153 CDS YP_004128843.1 319764906 10106341 complement(4458325..4458699) 1 NC_014910.1 KEGG: dia:Dtpsy_2869 hypothetical protein; hypothetical protein 4458699 10106341 Alide_4254 Alicycliphilus denitrificans BC hypothetical protein YP_004128843.1 4458325 R 596153 CDS YP_004128844.1 319764907 10106343 4459801..4460157 1 NC_014910.1 PFAM: membrane protein of unknown function; KEGG: dia:Dtpsy_3382 membrane protein of unknown function; hypothetical protein 4460157 10106343 Alide_4256 Alicycliphilus denitrificans BC hypothetical protein YP_004128844.1 4459801 D 596153 CDS YP_004128845.1 319764908 10106344 complement(4460125..4461651) 1 NC_014910.1 PFAM: peptidase M48 Ste24p; KEGG: dia:Dtpsy_3383 peptidase M48 Ste24p; peptidase m48 ste24p 4461651 10106344 Alide_4257 Alicycliphilus denitrificans BC peptidase m48 ste24p YP_004128845.1 4460125 R 596153 CDS YP_004128846.1 319764909 10106345 4461801..4462286 1 NC_014910.1 KEGG: ajs:Ajs_4034 GTP cyclohydrolase subunit MoaC; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC; molybdenum cofactor biosynthesis protein c 4462286 10106345 Alide_4258 Alicycliphilus denitrificans BC molybdenum cofactor biosynthesis protein c YP_004128846.1 4461801 D 596153 CDS YP_004128847.1 319764910 10106346 complement(4462424..4463215) 1 NC_014910.1 KEGG: pna:Pnap_3943 FimB; fimbrial assembly protein, fimb 4463215 10106346 Alide_4259 Alicycliphilus denitrificans BC fimbrial assembly protein, fimb YP_004128847.1 4462424 R 596153 CDS YP_004128848.1 319764911 10106347 complement(4463310..4463879) 1 NC_014910.1 KEGG: pau:PA14_58730 type IV pilin structural subunit; type IV pilin structural subunit 4463879 10106347 Alide_4260 Alicycliphilus denitrificans BC type IV pilin structural subunit YP_004128848.1 4463310 R 596153 CDS YP_004128849.1 319764912 10106348 complement(4464181..4464969) 1 NC_014910.1 KEGG: pol:Bpro_4676 cyclic-AMP phosphodiesterase; cyclic-amp phosphodiesterase 4464969 10106348 Alide_4261 Alicycliphilus denitrificans BC cyclic-amp phosphodiesterase YP_004128849.1 4464181 R 596153 CDS YP_004128850.1 319764913 10106349 complement(4465037..4465663) 1 NC_014910.1 KEGG: ajs:Ajs_4043 FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; forkhead-associated protein 4465663 10106349 Alide_4262 Alicycliphilus denitrificans BC forkhead-associated protein YP_004128850.1 4465037 R 596153 CDS YP_004128851.1 319764914 10106350 complement(4465725..4466531) 1 NC_014910.1 KEGG: ajs:Ajs_4044 protein phosphatase 2C domain-containing protein; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; protein phosphatase 2C 4466531 10106350 Alide_4263 Alicycliphilus denitrificans BC protein phosphatase 2C YP_004128851.1 4465725 R 596153 CDS YP_004128852.1 319764915 10106351 complement(4466758..4467441) 1 NC_014910.1 PFAM: Integral membrane protein TerC; KEGG: ajs:Ajs_4045 integral membrane protein TerC; integral membrane protein TerC 4467441 10106351 Alide_4264 Alicycliphilus denitrificans BC integral membrane protein TerC YP_004128852.1 4466758 R 596153 CDS YP_004128853.1 319764916 10106352 complement(4467583..4468476) 1 NC_014910.1 KEGG: dia:Dtpsy_3391 succinyl-CoA synthetase subunit alpha; TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein; succinyl-CoA synthetase subunit alpha 4468476 10106352 Alide_4265 Alicycliphilus denitrificans BC succinyl-CoA synthetase subunit alpha YP_004128853.1 4467583 R 596153 CDS YP_004128854.1 319764917 10106353 complement(4468498..4469658) 1 NC_014910.1 TIGRFAM: succinyl-CoA synthetase, beta subunit; KEGG: dia:Dtpsy_3392 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta 4469658 10106353 Alide_4266 Alicycliphilus denitrificans BC succinyl-CoA synthetase subunit beta YP_004128854.1 4468498 R 596153 CDS YP_004128855.1 319764918 10106354 4469833..4470765 1 NC_014910.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: dia:Dtpsy_3393 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; N-acetyl-gamma-glutamyl-phosphate reductase 4470765 10106354 Alide_4267 Alicycliphilus denitrificans BC N-acetyl-gamma-glutamyl-phosphate reductase YP_004128855.1 4469833 D 596153 CDS YP_004128856.1 319764919 10106355 complement(4470874..4472013) 1 NC_014910.1 KEGG: ajs:Ajs_4049 fis family transcriptional regulator; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein dpra 4472013 10106355 Alide_4268 Alicycliphilus denitrificans BC DNA protecting protein dpra YP_004128856.1 4470874 R 596153 CDS YP_004128857.1 319764920 10106356 complement(4472037..4473251) 1 NC_014910.1 KEGG: ajs:Ajs_4050 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; peptidoglycan-binding lysin domain-containing protein 4473251 10106356 Alide_4269 Alicycliphilus denitrificans BC peptidoglycan-binding lysin domain-containing protein YP_004128857.1 4472037 R 596153 CDS YP_004128858.1 319764921 10106357 4473451..4473966 1 NC_014910.1 KEGG: dia:Dtpsy_3396 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 4473966 10106357 Alide_4270 Alicycliphilus denitrificans BC peptide deformylase YP_004128858.1 4473451 D 596153 CDS YP_004128859.1 319764922 10106358 4473963..4474448 1 NC_014910.1 KEGG: ajs:Ajs_4052 lipoprotein transmembrane; lipoprotein transmembrane 4474448 10106358 Alide_4271 Alicycliphilus denitrificans BC lipoprotein transmembrane YP_004128859.1 4473963 D 596153 CDS YP_004128860.1 319764923 10106359 4474459..4475514 1 NC_014910.1 KEGG: ajs:Ajs_4053 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase 4475514 10106359 Alide_4272 Alicycliphilus denitrificans BC methionyl-tRNA formyltransferase YP_004128860.1 4474459 D 596153 CDS YP_004128861.1 319764924 10106360 4475511..4476260 1 NC_014910.1 PFAM: AzlC family protein; KEGG: ajs:Ajs_4054 AzlC family protein; azlc family protein 4476260 10106360 Alide_4273 Alicycliphilus denitrificans BC azlc family protein YP_004128861.1 4475511 D 596153 CDS YP_004128862.1 319764925 10106361 4476257..4476592 1 NC_014910.1 PFAM: branched-chain amino acid transport; KEGG: dia:Dtpsy_3400 branched-chain amino acid transport; branched-chain amino acid transport 4476592 10106361 Alide_4274 Alicycliphilus denitrificans BC branched-chain amino acid transport YP_004128862.1 4476257 D 596153 CDS YP_004128863.1 319764926 10106362 4476663..4477856 1 NC_014910.1 KEGG: dia:Dtpsy_3401 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; phosphoglycerate kinase 4477856 10106362 Alide_4275 Alicycliphilus denitrificans BC phosphoglycerate kinase YP_004128863.1 4476663 D 596153 CDS YP_004128864.1 319764927 10106363 4478016..4478702 1 NC_014910.1 KEGG: dac:Daci_0827 hypothetical protein; hypothetical protein 4478702 10106363 Alide_4276 Alicycliphilus denitrificans BC hypothetical protein YP_004128864.1 4478016 D 596153 CDS YP_004128865.1 319764928 10106364 4478699..4479253 1 NC_014910.1 KEGG: dac:Daci_0826 hypothetical protein; hypothetical protein 4479253 10106364 Alide_4277 Alicycliphilus denitrificans BC hypothetical protein YP_004128865.1 4478699 D 596153 CDS YP_004128866.1 319764929 10106365 complement(4479367..4480248) 1 NC_014910.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dia:Dtpsy_3402 protein of unknown function DUF6 transmembrane; hypothetical protein 4480248 10106365 Alide_4278 Alicycliphilus denitrificans BC hypothetical protein YP_004128866.1 4479367 R 596153 CDS YP_004128867.1 319764930 10106366 4480298..4481122 1 NC_014910.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: dia:Dtpsy_3403 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 4481122 10106366 Alide_4279 Alicycliphilus denitrificans BC orotidine 5'-phosphate decarboxylase YP_004128867.1 4480298 D 596153 CDS YP_004128868.1 319764931 10106367 4481139..4482035 1 NC_014910.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dia:Dtpsy_3404 transcriptional regulator, LysR family; LysR family transcriptional regulator 4482035 10106367 Alide_4280 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128868.1 4481139 D 596153 CDS YP_004128869.1 319764932 10106368 4482155..4483147 1 NC_014910.1 KEGG: ajs:Ajs_4060 hypothetical protein; hypothetical protein 4483147 10106368 Alide_4281 Alicycliphilus denitrificans BC hypothetical protein YP_004128869.1 4482155 D 596153 CDS YP_004128870.1 319764933 10106369 4483144..4484118 1 NC_014910.1 KEGG: dia:Dtpsy_3406 hypothetical protein; hypothetical protein 4484118 10106369 Alide_4282 Alicycliphilus denitrificans BC hypothetical protein YP_004128870.1 4483144 D 596153 CDS YP_004128871.1 319764934 10106370 4484248..4486215 1 NC_014910.1 KEGG: aav:Aave_4703 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; chemotaxis sensory transducer protein 4486215 10106370 Alide_4283 Alicycliphilus denitrificans BC chemotaxis sensory transducer protein YP_004128871.1 4484248 D 596153 CDS YP_004128872.1 319764935 10106371 complement(4486250..4489318) 1 NC_014910.1 KEGG: dia:Dtpsy_3409 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; excinuclease ABC subunit A 4489318 10106371 Alide_4284 Alicycliphilus denitrificans BC excinuclease ABC subunit A YP_004128872.1 4486250 R 596153 CDS YP_004128873.1 319764936 10106372 4489501..4490679 1 NC_014910.1 PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_4065 major facilitator superfamily transporter; major facilitator superfamily protein 4490679 10106372 Alide_4285 Alicycliphilus denitrificans BC major facilitator superfamily protein YP_004128873.1 4489501 D 596153 CDS YP_004128874.1 319764937 10106373 4490822..4491355 1 NC_014910.1 KEGG: ajs:Ajs_4066 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 4491355 10106373 Alide_4286 Alicycliphilus denitrificans BC single-strand binding protein YP_004128874.1 4490822 D 596153 CDS YP_004128875.1 319764938 10106374 4491490..4492338 1 NC_014910.1 KEGG: bbr:BB4747 transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 4492338 10106374 Alide_4287 Alicycliphilus denitrificans BC regulatory protein iclr YP_004128875.1 4491490 D 596153 CDS YP_004128876.1 319764939 10106375 complement(4492348..4493529) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4746 hypothetical protein; l-carnitine dehydratase/bile acid-inducible protein f 4493529 10106375 Alide_4288 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004128876.1 4492348 R 596153 CDS YP_004128877.1 319764940 10106376 complement(4493540..4494523) 1 NC_014910.1 KEGG: bbr:BB4754 hypothetical protein; hypothetical protein 4494523 10106376 Alide_4289 Alicycliphilus denitrificans BC hypothetical protein YP_004128877.1 4493540 R 596153 CDS YP_004128878.1 319764941 10106377 complement(4494558..4495001) 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: bbr:BB4745 hypothetical protein; thioesterase superfamily protein 4495001 10106377 Alide_4290 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004128878.1 4494558 R 596153 CDS YP_004128879.1 319764942 10106378 complement(4495017..4495994) 1 NC_014910.1 KEGG: bbr:BB4749 hypothetical protein; hypothetical protein 4495994 10106378 Alide_4291 Alicycliphilus denitrificans BC hypothetical protein YP_004128879.1 4495017 R 596153 CDS YP_004128880.1 319764943 10106379 complement(4496026..4496793) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB4750 short chain dehyrogenase; short-chain dehydrogenase/reductase sdr 4496793 10106379 Alide_4292 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004128880.1 4496026 R 596153 CDS YP_004128881.1 319764944 10106380 complement(4496823..4497305) 1 NC_014910.1 PFAM: MaoC domain protein dehydratase; KEGG: bbr:BB4751 hypothetical protein; MaoC domain-containing protein 4497305 10106380 Alide_4293 Alicycliphilus denitrificans BC MaoC domain-containing protein YP_004128881.1 4496823 R 596153 CDS YP_004128882.1 319764945 10106381 complement(4497326..4498474) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bbr:BB4752 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 4498474 10106381 Alide_4294 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004128882.1 4497326 R 596153 CDS YP_004128883.1 319764946 10106382 complement(4498482..4499726) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4753 hypothetical protein; l-carnitine dehydratase/bile acid-inducible protein f 4499726 10106382 Alide_4295 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004128883.1 4498482 R 596153 CDS YP_004128884.1 319764947 10106383 4499931..4500713 1 NC_014910.1 KEGG: reu:Reut_C6107 1,4-dihydroxy-2-naphthoate synthase; TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; PFAM: Enoyl-CoA hydratase/isomerase; 2-ketocyclohexanecarboxyl-CoA hydrolase 4500713 10106383 Alide_4296 Alicycliphilus denitrificans BC 2-ketocyclohexanecarboxyl-CoA hydrolase YP_004128884.1 4499931 D 596153 CDS YP_004128885.1 319764948 10106384 complement(4500874..4502535) 1 NC_014910.1 KEGG: ajs:Ajs_4067 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; l-lactate transport 4502535 10106384 Alide_4297 Alicycliphilus denitrificans BC l-lactate transport YP_004128885.1 4500874 R 596153 CDS YP_004128886.1 319764949 10106385 complement(4502775..4503896) 1 NC_014910.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dia:Dtpsy_3413 tRNA-specific 2-thiouridylase MnmA; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 4503896 10106385 Alide_4298 Alicycliphilus denitrificans BC tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase YP_004128886.1 4502775 R 596153 CDS YP_004128887.1 319764950 10106386 complement(4503893..4504834) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_0298 LysR family transcriptional regulator; LysR family transcriptional regulator 4504834 10106386 Alide_4299 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128887.1 4503893 R 596153 CDS YP_004128888.1 319764951 10106387 4504938..4506026 1 NC_014910.1 PFAM: protein of unknown function DUF453; KEGG: vei:Veis_0299 hypothetical protein; hypothetical protein 4506026 10106387 Alide_4300 Alicycliphilus denitrificans BC hypothetical protein YP_004128888.1 4504938 D 596153 CDS YP_004128889.1 319764952 10106388 4506079..4507068 1 NC_014910.1 KEGG: vei:Veis_0300 hypothetical protein; hypothetical protein 4507068 10106388 Alide_4301 Alicycliphilus denitrificans BC hypothetical protein YP_004128889.1 4506079 D 596153 CDS YP_004128890.1 319764953 10106389 4507090..4508175 1 NC_014910.1 PFAM: porin Gram-negative type; KEGG: vei:Veis_0301 porin; porin 4508175 10106389 Alide_4302 Alicycliphilus denitrificans BC porin YP_004128890.1 4507090 D 596153 CDS YP_004128891.1 319764954 10106390 4508253..4509197 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_3816 LysR family transcriptional regulator; LysR family transcriptional regulator 4509197 10106390 Alide_4303 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128891.1 4508253 D 596153 CDS YP_004128892.1 319764955 10106391 4509435..4510871 1 NC_014910.1 KEGG: dia:Dtpsy_3415 tricarballylate dehydrogenase; TIGRFAM: precorrin 3B synthase CobZ; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; precorrin 3b synthase cobz 4510871 10106391 Alide_4304 Alicycliphilus denitrificans BC precorrin 3b synthase cobz YP_004128892.1 4509435 D 596153 CDS YP_004128893.1 319764956 10106392 4510858..4512045 1 NC_014910.1 TIGRFAM: CitB domain protein; KEGG: ajs:Ajs_4071 CitB domain-containing protein; citb domain-containing protein 4512045 10106392 Alide_4305 Alicycliphilus denitrificans BC citb domain-containing protein YP_004128893.1 4510858 D 596153 CDS YP_004128894.1 319764957 10106393 4512131..4513108 1 NC_014910.1 KEGG: dia:Dtpsy_3417 hypothetical protein; hypothetical protein 4513108 10106393 Alide_4306 Alicycliphilus denitrificans BC hypothetical protein YP_004128894.1 4512131 D 596153 CDS YP_004128895.1 319764958 10106394 complement(4513151..4514827) 1 NC_014910.1 KEGG: dia:Dtpsy_3418 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 4514827 10106394 Alide_4307 Alicycliphilus denitrificans BC sigma-54 factor interaction domain-containing protein YP_004128895.1 4513151 R 596153 CDS YP_004128896.1 319764959 10106395 4514989..4516536 1 NC_014910.1 PFAM: carboxyl transferase; KEGG: dia:Dtpsy_3419 propionyl-CoA carboxylase; carboxyl transferase 4516536 10106395 Alide_4308 Alicycliphilus denitrificans BC carboxyl transferase YP_004128896.1 4514989 D 596153 CDS YP_004128897.1 319764960 10106396 4516566..4517576 1 NC_014910.1 KEGG: dac:Daci_1098 hypothetical protein; hypothetical protein 4517576 10106396 Alide_4309 Alicycliphilus denitrificans BC hypothetical protein YP_004128897.1 4516566 D 596153 CDS YP_004128898.1 319764961 10106397 4517586..4519664 1 NC_014910.1 PFAM: CoA-binding domain protein; KEGG: dia:Dtpsy_3421 CoA-binding domain protein; CoA-binding protein 4519664 10106397 Alide_4310 Alicycliphilus denitrificans BC CoA-binding protein YP_004128898.1 4517586 D 596153 CDS YP_004128899.1 319764962 10106398 4519661..4521028 1 NC_014910.1 KEGG: dac:Daci_1096 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin carboxylase 4521028 10106398 Alide_4311 Alicycliphilus denitrificans BC biotin carboxylase YP_004128899.1 4519661 D 596153 CDS YP_004128900.1 319764963 10106399 4521040..4521252 1 NC_014910.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: dia:Dtpsy_3423 biotin/lipoyl attachment domain-containing protein; biotin/lipoyl attachment domain-containing protein 4521252 10106399 Alide_4312 Alicycliphilus denitrificans BC biotin/lipoyl attachment domain-containing protein YP_004128900.1 4521040 D 596153 CDS YP_004128901.1 319764964 10106400 4521249..4521683 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: dia:Dtpsy_3424 thioesterase superfamily protein; thioesterase superfamily protein 4521683 10106400 Alide_4313 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004128901.1 4521249 D 596153 CDS YP_004128902.1 319764965 10106401 complement(4521710..4522195) 1 NC_014910.1 PFAM: NUDIX hydrolase; KEGG: dia:Dtpsy_3425 NUDIX hydrolase; nudix hydrolase 4522195 10106401 Alide_4314 Alicycliphilus denitrificans BC nudix hydrolase YP_004128902.1 4521710 R 596153 CDS YP_004128903.1 319764966 10106402 4522292..4522675 1 NC_014910.1 KEGG: dia:Dtpsy_3426 hypothetical protein; hypothetical protein 4522675 10106402 Alide_4315 Alicycliphilus denitrificans BC hypothetical protein YP_004128903.1 4522292 D 596153 CDS YP_004128904.1 319764967 10106403 4522785..4524902 1 NC_014910.1 KEGG: ajs:Ajs_4075 TonB-dependent copper receptor; TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; tonb-dependent copper receptor 4524902 10106403 Alide_4316 Alicycliphilus denitrificans BC tonb-dependent copper receptor YP_004128904.1 4522785 D 596153 CDS YP_004128905.1 319764968 10106404 4525122..4525586 1 NC_014910.1 PFAM: thioesterase superfamily protein; KEGG: met:M446_5737 thioesterase superfamily protein; thioesterase superfamily protein 4525586 10106404 Alide_4317 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004128905.1 4525122 D 596153 CDS YP_004128906.1 319764969 10106405 4525636..4526514 1 NC_014910.1 KEGG: bxe:Bxe_C0866 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 4526514 10106405 Alide_4318 Alicycliphilus denitrificans BC regulatory protein iclr YP_004128906.1 4525636 D 596153 CDS YP_004128907.1 319764970 10106406 complement(4526549..4527526) 1 NC_014910.1 KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein 4527526 10106406 Alide_4319 Alicycliphilus denitrificans BC hypothetical protein YP_004128907.1 4526549 R 596153 CDS YP_004128908.1 319764971 10106407 complement(4527562..4528755) 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpf:Rpic12D_1541 L-carnitine dehydratase/bile acid-inducible protein F; l-carnitine dehydratase/bile acid-inducible protein f 4528755 10106407 Alide_4320 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004128908.1 4527562 R 596153 CDS YP_004128909.1 319764972 10106408 complement(4528757..4529896) 1 NC_014910.1 KEGG: pzu:PHZ_c2530 hypothetical protein; hypothetical protein 4529896 10106408 Alide_4321 Alicycliphilus denitrificans BC hypothetical protein YP_004128909.1 4528757 R 596153 CDS YP_004128910.1 319764973 10106409 complement(4529936..4531486) 1 NC_014910.1 PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK2759 acetyl-CoA synthetase (acetate-CoA ligase); AMP-dependent synthetase/ligase 4531486 10106409 Alide_4322 Alicycliphilus denitrificans BC AMP-dependent synthetase/ligase YP_004128910.1 4529936 R 596153 CDS YP_004128911.1 319764974 10106410 complement(4531733..4532440) 1 NC_014910.1 TIGRFAM: riboflavin synthase, alpha subunit; KEGG: ajs:Ajs_4077 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha 4532440 10106410 Alide_4323 Alicycliphilus denitrificans BC riboflavin synthase subunit alpha YP_004128911.1 4531733 R 596153 CDS YP_004128912.1 319764975 10106411 4532570..4533184 1 NC_014910.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bav:BAV2734 amino acid efflux protein; lysine exporter protein (lyse/ygga) 4533184 10106411 Alide_4324 Alicycliphilus denitrificans BC lysine exporter protein (lyse/ygga) YP_004128912.1 4532570 D 596153 CDS YP_004128913.1 319764976 10106412 complement(4533191..4534564) 1 NC_014910.1 KEGG: ajs:Ajs_4082 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; ATP-binding domain-containing protein 4534564 10106412 Alide_4325 Alicycliphilus denitrificans BC ATP-binding domain-containing protein YP_004128913.1 4533191 R 596153 CDS YP_004128914.1 319764977 10106413 complement(4534817..4535494) 1 NC_014910.1 KEGG: dia:Dtpsy_3431 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; response regulator receiver 4535494 10106413 Alide_4326 Alicycliphilus denitrificans BC response regulator receiver YP_004128914.1 4534817 R 596153 CDS YP_004128915.1 319764978 10106414 complement(4535494..4535811) 1 NC_014910.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: dia:Dtpsy_3432 propeptide PepSY amd peptidase M4; propeptide pepsy amd peptidase m4 4535811 10106414 Alide_4327 Alicycliphilus denitrificans BC propeptide pepsy amd peptidase m4 YP_004128915.1 4535494 R 596153 CDS YP_004128916.1 319764979 10106415 4535950..4536261 1 NC_014910.1 KEGG: bpt:Bpet0098 hypothetical protein; hypothetical protein 4536261 10106415 Alide_4328 Alicycliphilus denitrificans BC hypothetical protein YP_004128916.1 4535950 D 596153 CDS YP_004128917.1 319764980 10106416 4536295..4537677 1 NC_014910.1 PFAM: Ferric reductase domain protein transmembrane component domain; Oxidoreductase FAD-binding domain protein; KEGG: dia:Dtpsy_3433 ferric reductase domain protein transmembrane component; ferric reductase 4537677 10106416 Alide_4329 Alicycliphilus denitrificans BC ferric reductase YP_004128917.1 4536295 D 596153 CDS YP_004128918.1 319764981 10106417 4537753..4538307 1 NC_014910.1 KEGG: pag:PLES_43981 cytochrome b561; cytochrome b561 4538307 10106417 Alide_4330 Alicycliphilus denitrificans BC cytochrome b561 YP_004128918.1 4537753 D 596153 CDS YP_004128919.1 319764982 10106418 4538356..4538724 1 NC_014910.1 KEGG: dia:Dtpsy_3434 hypothetical protein; hypothetical protein 4538724 10106418 Alide_4331 Alicycliphilus denitrificans BC hypothetical protein YP_004128919.1 4538356 D 596153 CDS YP_004128920.1 319764983 10106419 4538747..4539226 1 NC_014910.1 KEGG: ajs:Ajs_4087 hypothetical protein; hypothetical protein 4539226 10106419 Alide_4332 Alicycliphilus denitrificans BC hypothetical protein YP_004128920.1 4538747 D 596153 CDS YP_004128921.1 319764984 10106420 4539223..4541433 1 NC_014910.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: ajs:Ajs_4088 oxidoreductase FAD/NAD(P)-binding subunit; oxidoreductase fad/nad(p)-binding domain-containing protein 4541433 10106420 Alide_4333 Alicycliphilus denitrificans BC oxidoreductase fad/nad(p)-binding domain-containing protein YP_004128921.1 4539223 D 596153 CDS YP_004128922.1 319764985 10106421 4541414..4542391 1 NC_014910.1 PFAM: ApbE family lipoprotein; KEGG: dia:Dtpsy_3437 ApbE family lipoprotein; apbe family lipoprotein 4542391 10106421 Alide_4334 Alicycliphilus denitrificans BC apbe family lipoprotein YP_004128922.1 4541414 D 596153 CDS YP_004128923.1 319764986 10106422 4542493..4542798 1 NC_014910.1 KEGG: ajs:Ajs_4090 hypothetical protein; hypothetical protein 4542798 10106422 Alide_4335 Alicycliphilus denitrificans BC hypothetical protein YP_004128923.1 4542493 D 596153 CDS YP_004128924.1 319764987 10106423 complement(4542814..4543281) 1 NC_014910.1 KEGG: ajs:Ajs_4091 hypothetical protein; hypothetical protein 4543281 10106423 Alide_4336 Alicycliphilus denitrificans BC hypothetical protein YP_004128924.1 4542814 R 596153 CDS YP_004128925.1 319764988 10106424 4543353..4545902 1 NC_014910.1 KEGG: dia:Dtpsy_3444 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; ATPase P 4545902 10106424 Alide_4337 Alicycliphilus denitrificans BC ATPase P YP_004128925.1 4543353 D 596153 CDS YP_004128926.1 319764989 10106427 complement(4547583..4548677) 1 NC_014910.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bpt:Bpet0267 hypothetical protein; 2-nitropropane dioxygenase 4548677 10106427 Alide_4340 Alicycliphilus denitrificans BC 2-nitropropane dioxygenase YP_004128926.1 4547583 R 596153 CDS YP_004128927.1 319764990 10106428 complement(4548679..4549650) 1 NC_014910.1 KEGG: bpt:Bpetpseudo_01 hypothetical protein; hypothetical protein 4549650 10106428 Alide_4341 Alicycliphilus denitrificans BC hypothetical protein YP_004128927.1 4548679 R 596153 CDS YP_004128928.1 319764991 10106429 complement(4549680..4550834) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bpt:Bpet0266 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 4550834 10106429 Alide_4342 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004128928.1 4549680 R 596153 CDS YP_004128929.1 319764992 10106430 complement(4550853..4551662) 1 NC_014910.1 KEGG: bpt:Bpet0265 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 4551662 10106430 Alide_4343 Alicycliphilus denitrificans BC regulatory protein iclr YP_004128929.1 4550853 R 596153 CDS YP_004128930.1 319764993 10106431 4551852..4553192 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase; l-carnitine dehydratase/bile acid-inducible protein f 4553192 10106431 Alide_4344 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004128930.1 4551852 D 596153 CDS YP_004128931.1 319764994 10106432 4553210..4554211 1 NC_014910.1 KEGG: bpt:Bpet0263 alcohol dehydrogenase III; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; quinone oxidoreductase, yhdh/yhfp family 4554211 10106432 Alide_4345 Alicycliphilus denitrificans BC quinone oxidoreductase, yhdh/yhfp family YP_004128931.1 4553210 D 596153 CDS YP_004128932.1 319764995 10106434 complement(4554441..4555673) 1 NC_014910.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: sth:STH2463 acyl-CoA dehydrogenase, short-chain specific; acyl-CoA dehydrogenase 4555673 10106434 Alide_4347 Alicycliphilus denitrificans BC acyl-CoA dehydrogenase YP_004128932.1 4554441 R 596153 CDS YP_004128933.1 319764996 10106435 complement(4555687..4556673) 1 NC_014910.1 KEGG: bpt:Bpetpseudo_01 hypothetical protein; hypothetical protein 4556673 10106435 Alide_4348 Alicycliphilus denitrificans BC hypothetical protein YP_004128933.1 4555687 R 596153 CDS YP_004128934.1 319764997 10106436 complement(4556711..4557571) 1 NC_014910.1 KEGG: bpt:Bpet0265 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; regulatory protein iclr 4557571 10106436 Alide_4349 Alicycliphilus denitrificans BC regulatory protein iclr YP_004128934.1 4556711 R 596153 CDS YP_004128935.1 319764998 10106437 4557656..4558891 1 NC_014910.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase; l-carnitine dehydratase/bile acid-inducible protein f 4558891 10106437 Alide_4350 Alicycliphilus denitrificans BC l-carnitine dehydratase/bile acid-inducible protein f YP_004128935.1 4557656 D 596153 CDS YP_004128936.1 319764999 10106438 complement(4558888..4559829) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vei:Veis_4196 LysR family transcriptional regulator; LysR family transcriptional regulator 4559829 10106438 Alide_4351 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128936.1 4558888 R 596153 CDS YP_004128937.1 319765000 10106439 4559936..4560922 1 NC_014910.1 KEGG: vap:Vapar_1641 hypothetical protein; hypothetical protein 4560922 10106439 Alide_4352 Alicycliphilus denitrificans BC hypothetical protein YP_004128937.1 4559936 D 596153 CDS YP_004128938.1 319765001 10106440 4560934..4562553 1 NC_014910.1 TIGRFAM: gamma-glutamyltransferase; KEGG: vap:Vapar_1640 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 4562553 10106440 Alide_4353 Alicycliphilus denitrificans BC gamma-glutamyltransferase YP_004128938.1 4560934 D 596153 CDS YP_004128939.1 319765002 10106441 complement(4562569..4563231) 1 NC_014910.1 KEGG: scl:sce0660 ABC transporter sodium permease; hypothetical protein 4563231 10106441 Alide_4354 Alicycliphilus denitrificans BC hypothetical protein YP_004128939.1 4562569 R 596153 CDS YP_004128940.1 319765003 10106442 complement(4563384..4565051) 1 NC_014910.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: ajs:Ajs_4093 twin-arginine translocation pathway signal; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 4565051 10106442 Alide_4355 Alicycliphilus denitrificans BC fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004128940.1 4563384 R 596153 CDS YP_004128941.1 319765004 10106443 complement(4565051..4566604) 1 NC_014910.1 PFAM: Spermine synthase; KEGG: dia:Dtpsy_3446 spermidine synthase; spermine synthase 4566604 10106443 Alide_4356 Alicycliphilus denitrificans BC spermine synthase YP_004128941.1 4565051 R 596153 CDS YP_004128942.1 319765005 10106444 complement(4566618..4566839) 1 NC_014910.1 PFAM: protein of unknown function DUF350; KEGG: dia:Dtpsy_3447 protein of unknown function DUF350; hypothetical protein 4566839 10106444 Alide_4357 Alicycliphilus denitrificans BC hypothetical protein YP_004128942.1 4566618 R 596153 CDS YP_004128943.1 319765006 10106445 complement(4566876..4568360) 1 NC_014910.1 KEGG: dia:Dtpsy_3448 transmembrane protein; transmembrane protein 4568360 10106445 Alide_4358 Alicycliphilus denitrificans BC transmembrane protein YP_004128943.1 4566876 R 596153 CDS YP_004128944.1 319765007 10106446 complement(4568429..4569466) 1 NC_014910.1 PFAM: band 7 protein; KEGG: ajs:Ajs_4099 transmembrane protein; hypothetical protein 4569466 10106446 Alide_4359 Alicycliphilus denitrificans BC hypothetical protein YP_004128944.1 4568429 R 596153 CDS YP_004128945.1 319765008 10106447 4569635..4569943 1 NC_014910.1 PFAM: Protein of unknown function DUF2061, membrane; KEGG: dia:Dtpsy_3450 hypothetical protein; hypothetical protein 4569943 10106447 Alide_4360 Alicycliphilus denitrificans BC hypothetical protein YP_004128945.1 4569635 D 596153 CDS YP_004128946.1 319765009 10106448 complement(4569865..4570188) 1 NC_014910.1 KEGG: dia:Dtpsy_3453 flagellar basal body rod protein; flagellar basal body rod protein 4570188 10106448 Alide_4361 Alicycliphilus denitrificans BC flagellar basal body rod protein YP_004128946.1 4569865 R 596153 CDS YP_004128947.1 319765010 10106449 complement(4570250..4571194) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dia:Dtpsy_3454 transcriptional regulator, LysR family; LysR family transcriptional regulator 4571194 10106449 Alide_4362 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128947.1 4570250 R 596153 CDS YP_004128948.1 319765011 10106450 4571286..4572641 1 NC_014910.1 KEGG: aav:Aave_4744 beta alanine--pyruvate transaminase; PFAM: aminotransferase class-III; beta-alanine--pyruvate transaminase 4572641 10106450 Alide_4363 Alicycliphilus denitrificans BC beta-alanine--pyruvate transaminase YP_004128948.1 4571286 D 596153 CDS YP_004128949.1 319765012 10106451 4572711..4574228 1 NC_014910.1 KEGG: dia:Dtpsy_3456 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; methylmalonate-semialdehyde dehydrogenase 4574228 10106451 Alide_4364 Alicycliphilus denitrificans BC methylmalonate-semialdehyde dehydrogenase YP_004128949.1 4572711 D 596153 CDS YP_004128950.1 319765013 10106452 4574320..4575453 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; KEGG: aav:Aave_4748 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 4575453 10106452 Alide_4365 Alicycliphilus denitrificans BC diguanylate cyclase YP_004128950.1 4574320 D 596153 CDS YP_004128951.1 319765014 10106453 complement(4575466..4576305) 1 NC_014910.1 KEGG: dia:Dtpsy_3457 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 4576305 10106453 Alide_4366 Alicycliphilus denitrificans BC GntR family transcriptional regulator YP_004128951.1 4575466 R 596153 CDS YP_004128952.1 319765015 10106454 4576527..4577732 1 NC_014910.1 KEGG: dia:Dtpsy_3458 extracellular ligand-binding receptor; ABC transporter substrate-binding protein 4577732 10106454 Alide_4367 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128952.1 4576527 D 596153 CDS YP_004128953.1 319765016 10106455 4577767..4578627 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dia:Dtpsy_3459 inner-membrane translocator; inner-membrane translocator 4578627 10106455 Alide_4368 Alicycliphilus denitrificans BC inner-membrane translocator YP_004128953.1 4577767 D 596153 CDS YP_004128954.1 319765017 10106456 4578633..4579628 1 NC_014910.1 PFAM: inner-membrane translocator; KEGG: dac:Daci_6025 inner-membrane translocator; inner-membrane translocator 4579628 10106456 Alide_4369 Alicycliphilus denitrificans BC inner-membrane translocator YP_004128954.1 4578633 D 596153 CDS YP_004128955.1 319765018 10106457 4579625..4580407 1 NC_014910.1 KEGG: dia:Dtpsy_3461 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4580407 10106457 Alide_4370 Alicycliphilus denitrificans BC ABC transporter YP_004128955.1 4579625 D 596153 CDS YP_004128956.1 319765019 10106458 4580404..4581180 1 NC_014910.1 KEGG: dac:Daci_6027 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 4581180 10106458 Alide_4371 Alicycliphilus denitrificans BC ABC transporter YP_004128956.1 4580404 D 596153 CDS YP_004128957.1 319765020 10106459 4581194..4582450 1 NC_014910.1 TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: dia:Dtpsy_3463 amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; amidase 4582450 10106459 Alide_4372 Alicycliphilus denitrificans BC amidase YP_004128957.1 4581194 D 596153 CDS YP_004128958.1 319765021 10106460 4582447..4583913 1 NC_014910.1 PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: dia:Dtpsy_3464 microcystin LR degradation protein MlrC-like protein; microcystin lr degradation protein mlrc-like protein 4583913 10106460 Alide_4373 Alicycliphilus denitrificans BC microcystin lr degradation protein mlrc-like protein YP_004128958.1 4582447 D 596153 CDS YP_004128959.1 319765022 10106461 4584061..4586370 1 NC_014910.1 PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: dia:Dtpsy_3465 malic enzyme; malic protein nad-binding protein 4586370 10106461 Alide_4374 Alicycliphilus denitrificans BC malic protein nad-binding protein YP_004128959.1 4584061 D 596153 CDS YP_004128960.1 319765023 10106462 4586504..4586908 1 NC_014910.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: dia:Dtpsy_3466 guanine-specific ribonuclease N1 and T1; guanine-specific ribonuclease n1 and t1 4586908 10106462 Alide_4375 Alicycliphilus denitrificans BC guanine-specific ribonuclease n1 and t1 YP_004128960.1 4586504 D 596153 CDS YP_004128961.1 319765024 10106463 4587049..4587474 1 NC_014910.1 PFAM: Barstar (barnase inhibitor); KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor); barstar (barnase inhibitor) 4587474 10106463 Alide_4376 Alicycliphilus denitrificans BC barstar (barnase inhibitor) YP_004128961.1 4587049 D 596153 CDS YP_004128962.1 319765025 10106464 complement(4587704..4588471) 1 NC_014910.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: dia:Dtpsy_3468 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase-like; dimethyladenosine transferase 4588471 10106464 Alide_4377 Alicycliphilus denitrificans BC dimethyladenosine transferase YP_004128962.1 4587704 R 596153 CDS YP_004128963.1 319765026 10106465 complement(4588468..4589883) 1 NC_014910.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dia:Dtpsy_3469 SurA domain protein; sura domain-containing protein 4589883 10106465 Alide_4378 Alicycliphilus denitrificans BC sura domain-containing protein YP_004128963.1 4588468 R 596153 CDS YP_004128964.1 319765027 10106466 complement(4589917..4592361) 1 NC_014910.1 PFAM: Organic solvent tolerance protein; KEGG: dia:Dtpsy_3470 organic solvent tolerance protein; organic solvent tolerance protein 4592361 10106466 Alide_4379 Alicycliphilus denitrificans BC organic solvent tolerance protein YP_004128964.1 4589917 R 596153 CDS YP_004128965.1 319765028 10106467 4592435..4593550 1 NC_014910.1 PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_4113 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4593550 10106467 Alide_4380 Alicycliphilus denitrificans BC aminoglycoside phosphotransferase YP_004128965.1 4592435 D 596153 CDS YP_004128966.1 319765029 10106468 4593618..4594331 1 NC_014910.1 PFAM: protein of unknown function DUF558; KEGG: dia:Dtpsy_3472 16S ribosomal RNA methyltransferase RsmE; hypothetical protein 4594331 10106468 Alide_4381 Alicycliphilus denitrificans BC hypothetical protein YP_004128966.1 4593618 D 596153 CDS YP_004128967.1 319765030 10106469 4594331..4595665 1 NC_014910.1 KEGG: dia:Dtpsy_3473 hypothetical protein; hypothetical protein 4595665 10106469 Alide_4382 Alicycliphilus denitrificans BC hypothetical protein YP_004128967.1 4594331 D 596153 CDS YP_004128968.1 319765031 10106470 4595658..4596362 1 NC_014910.1 KEGG: ajs:Ajs_4116 hypothetical protein; hypothetical protein 4596362 10106470 Alide_4383 Alicycliphilus denitrificans BC hypothetical protein YP_004128968.1 4595658 D 596153 CDS YP_004128969.1 319765032 10106471 4596363..4599200 1 NC_014910.1 PFAM: SMC domain protein; KEGG: dia:Dtpsy_3475 SMC domain protein; smc domain-containing protein 4599200 10106471 Alide_4384 Alicycliphilus denitrificans BC smc domain-containing protein YP_004128969.1 4596363 D 596153 CDS YP_004128970.1 319765033 10106472 complement(4599273..4600736) 1 NC_014910.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dia:Dtpsy_3479 peptidase M20; peptidase m20 4600736 10106472 Alide_4385 Alicycliphilus denitrificans BC peptidase m20 YP_004128970.1 4599273 R 596153 CDS YP_004128971.1 319765034 10106473 complement(4600810..4601997) 1 NC_014910.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dia:Dtpsy_3480 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 4601997 10106473 Alide_4386 Alicycliphilus denitrificans BC diguanylate cyclase YP_004128971.1 4600810 R 596153 CDS YP_004128972.1 319765035 10106474 complement(4602173..4603015) 1 NC_014910.1 KEGG: scl:sce1833 hypothetical protein; hypothetical protein 4603015 10106474 Alide_4387 Alicycliphilus denitrificans BC hypothetical protein YP_004128972.1 4602173 R 596153 CDS YP_004128973.1 319765036 10106475 4603152..4604168 1 NC_014910.1 PFAM: Domain of unknown function P63C; KEGG: bbr:BB2198 hypothetical protein; hypothetical protein 4604168 10106475 Alide_4388 Alicycliphilus denitrificans BC hypothetical protein YP_004128973.1 4603152 D 596153 CDS YP_004128974.1 319765037 10106476 complement(4604170..4604316) 1 NC_014910.1 KEGG: cts:Ctha_0467 translation initiation factor IF-2; translation initiation factor if-2 4604316 10106476 Alide_4389 Alicycliphilus denitrificans BC translation initiation factor if-2 YP_004128974.1 4604170 R 596153 CDS YP_004128975.1 319765038 10106477 complement(4604461..4605045) 1 NC_014910.1 KEGG: dia:Dtpsy_3482 methionine biosynthesis protein MetW; TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; methionine biosynthesis protein metw 4605045 10106477 Alide_4390 Alicycliphilus denitrificans BC methionine biosynthesis protein metw YP_004128975.1 4604461 R 596153 CDS YP_004128976.1 319765039 10106478 complement(4605042..4606172) 1 NC_014910.1 TIGRFAM: homoserine O-acetyltransferase; KEGG: ajs:Ajs_4125 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine o-acetyltransferase 4606172 10106478 Alide_4391 Alicycliphilus denitrificans BC homoserine o-acetyltransferase YP_004128976.1 4605042 R 596153 CDS YP_004128977.1 319765040 10106479 complement(4606305..4606883) 1 NC_014910.1 PFAM: protein of unknown function UPF0016; KEGG: dia:Dtpsy_3484 protein of unknown function UPF0016; hypothetical protein 4606883 10106479 Alide_4392 Alicycliphilus denitrificans BC hypothetical protein YP_004128977.1 4606305 R 596153 CDS YP_004128978.1 319765041 10106480 4607355..4607705 1 NC_014910.1 KEGG: dia:Dtpsy_3485 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; rnp-1 like RNA-binding protein 4607705 10106480 Alide_4393 Alicycliphilus denitrificans BC rnp-1 like RNA-binding protein YP_004128978.1 4607355 D 596153 CDS YP_004128979.1 319765042 10106481 4607941..4608375 1 NC_014910.1 KEGG: ajs:Ajs_4128 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; rnp-1 like RNA-binding protein 4608375 10106481 Alide_4394 Alicycliphilus denitrificans BC rnp-1 like RNA-binding protein YP_004128979.1 4607941 D 596153 CDS YP_004128980.1 319765043 10106482 complement(4608462..4609256) 1 NC_014910.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_4129 short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 4609256 10106482 Alide_4395 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004128980.1 4608462 R 596153 CDS YP_004128981.1 319765044 10106483 complement(4609267..4609908) 1 NC_014910.1 PFAM: protein of unknown function DUF1239; KEGG: dia:Dtpsy_3488 protein of unknown function DUF1239; hypothetical protein 4609908 10106483 Alide_4396 Alicycliphilus denitrificans BC hypothetical protein YP_004128981.1 4609267 R 596153 CDS YP_004128982.1 319765045 10106484 complement(4609905..4610477) 1 NC_014910.1 KEGG: dia:Dtpsy_3489 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4610477 10106484 Alide_4397 Alicycliphilus denitrificans BC 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_004128982.1 4609905 R 596153 CDS YP_004128983.1 319765046 10106485 complement(4610477..4611478) 1 NC_014910.1 SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: ajs:Ajs_4132 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; kpsf/gutq family protein 4611478 10106485 Alide_4398 Alicycliphilus denitrificans BC kpsf/gutq family protein YP_004128983.1 4610477 R 596153 CDS YP_004128984.1 319765047 10106486 4611527..4613512 1 NC_014910.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: ajs:Ajs_4133 potassium efflux system protein; sodium/hydrogen exchanger 4613512 10106486 Alide_4399 Alicycliphilus denitrificans BC sodium/hydrogen exchanger YP_004128984.1 4611527 D 596153 CDS YP_004128985.1 319765048 10106487 4613550..4614104 1 NC_014910.1 KEGG: dia:Dtpsy_3492 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 4614104 10106487 Alide_4400 Alicycliphilus denitrificans BC adenine phosphoribosyltransferase YP_004128985.1 4613550 D 596153 CDS YP_004128986.1 319765049 10106488 complement(4614151..4615038) 1 NC_014910.1 KEGG: ajs:Ajs_4136 hypothetical protein; hypothetical protein 4615038 10106488 Alide_4401 Alicycliphilus denitrificans BC hypothetical protein YP_004128986.1 4614151 R 596153 CDS YP_004128987.1 319765050 10106489 complement(4615161..4615646) 1 NC_014910.1 KEGG: dia:Dtpsy_3494 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; cyclic nucleotide-binding protein 4615646 10106489 Alide_4402 Alicycliphilus denitrificans BC cyclic nucleotide-binding protein YP_004128987.1 4615161 R 596153 CDS YP_004128988.1 319765051 10106490 complement(4615729..4617126) 1 NC_014910.1 KEGG: ajs:Ajs_4138 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; tRNA modification gtpase trme 4617126 10106490 Alide_4403 Alicycliphilus denitrificans BC tRNA modification gtpase trme YP_004128988.1 4615729 R 596153 CDS YP_004128989.1 319765052 10106491 complement(4617204..4618091) 1 NC_014910.1 KEGG: aav:Aave_1937 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ABC transporter substrate-binding protein 4618091 10106491 Alide_4404 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128989.1 4617204 R 596153 CDS YP_004128990.1 319765053 10106492 4618361..4619557 1 NC_014910.1 PFAM: FAD dependent oxidoreductase; KEGG: vap:Vapar_1545 D-amino-acid dehydrogenase; FAD-dependent oxidoreductase 4619557 10106492 Alide_4405 Alicycliphilus denitrificans BC FAD-dependent oxidoreductase YP_004128990.1 4618361 D 596153 CDS YP_004128991.1 319765054 10106493 complement(4619561..4620466) 1 NC_014910.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_1935 LysR family transcriptional regulator; LysR family transcriptional regulator 4620466 10106493 Alide_4406 Alicycliphilus denitrificans BC LysR family transcriptional regulator YP_004128991.1 4619561 R 596153 CDS YP_004128992.1 319765055 10106494 complement(4620494..4621234) 1 NC_014910.1 KEGG: aav:Aave_1663 aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; aspartate racemase 4621234 10106494 Alide_4407 Alicycliphilus denitrificans BC aspartate racemase YP_004128992.1 4620494 R 596153 CDS YP_004128993.1 319765056 10106495 complement(4621231..4622049) 1 NC_014910.1 PFAM: peptidase M55 D-aminopeptidase; KEGG: aav:Aave_1662 D-aminopeptidase DppA; peptidase m55 d-aminopeptidase 4622049 10106495 Alide_4408 Alicycliphilus denitrificans BC peptidase m55 d-aminopeptidase YP_004128993.1 4621231 R 596153 CDS YP_004128994.1 319765057 10106496 complement(4622114..4623151) 1 NC_014910.1 PFAM: peptidase S58 DmpA; KEGG: aav:Aave_1661 aminopeptidase DmpA; peptidase s58 dmpa 4623151 10106496 Alide_4409 Alicycliphilus denitrificans BC peptidase s58 dmpa YP_004128994.1 4622114 R 596153 CDS YP_004128995.1 319765058 10106497 complement(4623148..4624056) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1660 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4624056 10106497 Alide_4410 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004128995.1 4623148 R 596153 CDS YP_004128996.1 319765059 10106498 complement(4624064..4624984) 1 NC_014910.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1659 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4624984 10106498 Alide_4411 Alicycliphilus denitrificans BC binding-protein-dependent transport system inner membrane protein YP_004128996.1 4624064 R 596153 CDS YP_004128997.1 319765060 10106499 complement(4625053..4626597) 1 NC_014910.1 PFAM: extracellular solute-binding protein family 5; KEGG: aav:Aave_1658 extracellular solute-binding protein; ABC transporter substrate-binding protein 4626597 10106499 Alide_4412 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004128997.1 4625053 R 596153 CDS YP_004128998.1 319765061 10106500 complement(4626689..4628563) 1 NC_014910.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: aav:Aave_1657 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 4628563 10106500 Alide_4413 Alicycliphilus denitrificans BC oligopeptide/dipeptide ABC transporter ATPase YP_004128998.1 4626689 R 596153 CDS YP_004128999.1 319765062 10106501 complement(4628580..4629578) 1 NC_014910.1 PFAM: peptidase T2 asparaginase 2; KEGG: aav:Aave_1656 asparaginase; peptidase t2 asparaginase 2 4629578 10106501 Alide_4414 Alicycliphilus denitrificans BC peptidase t2 asparaginase 2 YP_004128999.1 4628580 R 596153 CDS YP_004129000.1 319765063 10106502 complement(4629575..4630507) 1 NC_014910.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: aav:Aave_1655 RpiR family transcriptional regulator; sugar isomerase (sis) 4630507 10106502 Alide_4415 Alicycliphilus denitrificans BC sugar isomerase (sis) YP_004129000.1 4629575 R 596153 CDS YP_004129001.1 319765064 10106505 complement(4632627..4634213) 1 NC_014910.1 PFAM: extracellular solute-binding protein family 5; KEGG: ajs:Ajs_4139 extracellular solute-binding protein; ABC transporter substrate-binding protein 4634213 10106505 Alide_4418 Alicycliphilus denitrificans BC ABC transporter substrate-binding protein YP_004129001.1 4632627 R 596153 CDS YP_004129002.1 319765065 10106506 complement(4634321..4636015) 1 NC_014910.1 KEGG: dia:Dtpsy_3542 YidC translocase/secretase; TIGRFAM: membrane protein insertase, YidC/Oxa1 family domain containing; membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein; membrane protein insertase 4636015 10106506 Alide_4419 Alicycliphilus denitrificans BC membrane protein insertase YP_004129002.1 4634321 R 596153 CDS YP_004129003.1 319765066 10106507 complement(4636012..4636305) 1 NC_014910.1 PFAM: protein of unknown function DUF37; KEGG: ajs:Ajs_4141 hypothetical protein; hypothetical protein 4636305 10106507 Alide_4420 Alicycliphilus denitrificans BC hypothetical protein YP_004129003.1 4636012 R 596153 CDS YP_004129004.1 319765067 10106508 complement(4636302..4636742) 1 NC_014910.1 KEGG: dia:Dtpsy_3544 hypothetical protein; hypothetical protein 4636742 10106508 Alide_4421 Alicycliphilus denitrificans BC hypothetical protein YP_004129004.1 4636302 R 596153 CDS YP_004129005.1 319765068 10106509 complement(4636785..4636919) 1 NC_014910.1 KEGG: vei:Veis_5015 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; 50S ribosomal protein L34 4636919 10106509 Alide_4422 Alicycliphilus denitrificans BC 50S ribosomal protein L34 YP_004129005.1 4636785 R 596153 CDS YP_004129006.1 319765070 10106603 126..611 1 NC_014911.1 manually curated; KEGG: see:SNSL254_p_0036 hypothetical protein; hypothetical protein 611 10106603 Alide_4423 Alicycliphilus denitrificans BC hypothetical protein YP_004129006.1 126 D 596153 CDS YP_004129007.1 319765071 10106512 complement(505..4851) 1 NC_014911.1 KEGG: reu:Reut_D6521 toprim; PFAM: hypothetical protein; TOPRIM domain-containing protein; SMART: Toprim sub domain-containing protein; hypothetical protein 4851 10106512 Alide_4424 Alicycliphilus denitrificans BC hypothetical protein YP_004129007.1 505 R 596153 CDS YP_004129008.1 319765072 10106513 complement(4855..5244) 1 NC_014911.1 KEGG: bam:Bamb_6615 conjugal transfer protein; conjugal transfer protein 5244 10106513 Alide_4425 Alicycliphilus denitrificans BC conjugal transfer protein YP_004129008.1 4855 R 596153 CDS YP_004129009.1 319765073 10106514 complement(5266..7329) 1 NC_014911.1 SMART: DNA topoisomerase I DNA-binding; Toprim sub domain-containing protein; DNA topoisomerase I ATP-binding; TIGRFAM: DNA topoisomerase III; KEGG: bam:Bamb_6614 DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase III 7329 10106514 Alide_4426 Alicycliphilus denitrificans BC DNA topoisomerase III YP_004129009.1 5266 R 596153 CDS YP_004129010.1 319765074 10106515 complement(7341..7877) 1 NC_014911.1 KEGG: bam:Bamb_6613 conjugal transfer peptidase TraF; TIGRFAM: conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region; conjugative transfer signal peptidase traf 7877 10106515 Alide_4427 Alicycliphilus denitrificans BC conjugative transfer signal peptidase traf YP_004129010.1 7341 R 596153 CDS YP_004129011.1 319765075 10106516 complement(7874..9787) 1 NC_014911.1 PFAM: TRAG family protein; KEGG: reu:Reut_D6525 conjugal transfer coupling protein TraG; trag family protein 9787 10106516 Alide_4428 Alicycliphilus denitrificans BC trag family protein YP_004129011.1 7874 R 596153 CDS YP_004129012.1 319765076 10106517 complement(9784..12024) 1 NC_014911.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: reu:Reut_D6526 conjugal transfer relaxase TraI; relaxase/mobilization nuclease family protein 12024 10106517 Alide_4429 Alicycliphilus denitrificans BC relaxase/mobilization nuclease family protein YP_004129012.1 9784 R 596153 CDS YP_004129013.1 319765077 10106518 complement(12059..12433) 1 NC_014911.1 KEGG: bam:Bamb_6610 conjugal transfer relaxosome component TraJ; conjugal transfer relaxosome component traj 12433 10106518 Alide_4430 Alicycliphilus denitrificans BC conjugal transfer relaxosome component traj YP_004129013.1 12059 R 596153 CDS YP_004129014.1 319765078 10106519 12807..13205 1 NC_014911.1 KEGG: bam:Bamb_6609 TraK protein of DNA transfer system; trak protein of DNA transfer system 13205 10106519 Alide_4431 Alicycliphilus denitrificans BC trak protein of DNA transfer system YP_004129014.1 12807 D 596153 CDS YP_004129015.1 319765079 10106520 13205..13930 1 NC_014911.1 KEGG: reu:Reut_D6529 conjugal transfer protein TraL; conjugal transfer protein tral 13930 10106520 Alide_4432 Alicycliphilus denitrificans BC conjugal transfer protein tral YP_004129015.1 13205 D 596153 CDS YP_004129016.1 319765080 10106521 13930..14370 1 NC_014911.1 KEGG: bam:Bamb_6607 conjugal transfer protein TraM; conjugal transfer protein tram 14370 10106521 Alide_4433 Alicycliphilus denitrificans BC conjugal transfer protein tram YP_004129016.1 13930 D 596153 CDS YP_004129017.1 319765081 10106522 complement(14573..15226) 1 NC_014911.1 KEGG: bam:Bamb_6606 hypothetical protein; hypothetical protein 15226 10106522 Alide_4434 Alicycliphilus denitrificans BC hypothetical protein YP_004129017.1 14573 R 596153 CDS YP_004129018.1 319765082 10106523 complement(15255..15602) 1 NC_014911.1 KEGG: bam:Bamb_6605 conjugation protein TraO; conjugation protein trao 15602 10106523 Alide_4435 Alicycliphilus denitrificans BC conjugation protein trao YP_004129018.1 15255 R 596153 CDS YP_004129019.1 319765083 10106524 complement(15773..16804) 1 NC_014911.1 KEGG: reu:Reut_D6443 hypothetical protein; hypothetical protein 16804 10106524 Alide_4436 Alicycliphilus denitrificans BC hypothetical protein YP_004129019.1 15773 R 596153 CDS YP_004129020.1 319765084 10106525 complement(16983..18032) 1 NC_014911.1 TIGRFAM: parB-like partition protein; PFAM: KorB domain protein; ParB domain protein nuclease; KEGG: bam:Bamb_6603 ParB-like partition proteins; SMART: ParB domain protein nuclease; parb-like partition protein 18032 10106525 Alide_4437 Alicycliphilus denitrificans BC parb-like partition protein YP_004129020.1 16983 R 596153 CDS YP_004129021.1 319765085 10106526 complement(18029..18793) 1 NC_014911.1 KEGG: bam:Bamb_6602 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 18793 10106526 Alide_4438 Alicycliphilus denitrificans BC cobyrinic acid a,c-diamide synthase YP_004129021.1 18029 R 596153 CDS YP_004129022.1 319765086 10106527 complement(18790..19092) 1 NC_014911.1 KEGG: eba:p2D2 TrfB transcriptional repressor protein; trfb transcriptional repressor protein 19092 10106527 Alide_4439 Alicycliphilus denitrificans BC trfb transcriptional repressor protein YP_004129022.1 18790 R 596153 CDS YP_004129023.1 319765087 10106528 complement(19206..19736) 1 NC_014911.1 KEGG: bam:Bamb_6601 hypothetical protein; hypothetical protein 19736 10106528 Alide_4440 Alicycliphilus denitrificans BC hypothetical protein YP_004129023.1 19206 R 596153 CDS YP_004129024.1 319765088 10106529 complement(19738..20067) 1 NC_014911.1 KEGG: bam:Bamb_6600 hypothetical protein; hypothetical protein 20067 10106529 Alide_4441 Alicycliphilus denitrificans BC hypothetical protein YP_004129024.1 19738 R 596153 CDS YP_004129025.1 319765089 10106530 complement(20212..20427) 1 NC_014911.1 KEGG: api:100160724 similar to glyoxylate reductase/hydroxypyruvate reductase; glyoxylate reductase/hydroxypyruvate reductase-like protein 20427 10106530 Alide_4442 Alicycliphilus denitrificans BC glyoxylate reductase/hydroxypyruvate reductase-like protein YP_004129025.1 20212 R 596153 CDS YP_004129026.1 319765090 10106531 complement(20486..20722) 1 NC_014911.1 KEGG: bam:Bamb_6599 hypothetical protein; hypothetical protein 20722 10106531 Alide_4443 Alicycliphilus denitrificans BC hypothetical protein YP_004129026.1 20486 R 596153 CDS YP_004129027.1 319765091 10106532 complement(20882..21139) 1 NC_014911.1 KEGG: bam:Bamb_6598 hypothetical protein; hypothetical protein 21139 10106532 Alide_4444 Alicycliphilus denitrificans BC hypothetical protein YP_004129027.1 20882 R 596153 CDS YP_004129028.1 319765092 10106533 complement(21156..22361) 1 NC_014911.1 KEGG: bam:Bamb_6597 hypothetical protein; hypothetical protein 22361 10106533 Alide_4445 Alicycliphilus denitrificans BC hypothetical protein YP_004129028.1 21156 R 596153 CDS YP_004129029.1 319765093 10106534 complement(22413..22841) 1 NC_014911.1 PFAM: antirestriction protein; KEGG: bam:Bamb_6596 antirestriction protein; antirestriction protein 22841 10106534 Alide_4446 Alicycliphilus denitrificans BC antirestriction protein YP_004129029.1 22413 R 596153 CDS YP_004129030.1 319765094 10106535 24060..24386 1 NC_014911.1 KEGG: rme:Rmet_6068 transposase DNA binding site ISRme15; manually curated; PFAM: transposase IS3/IS911 family protein; transposase is3/is911 family protein 24386 10106535 Alide_4447 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004129030.1 24060 D 596153 CDS YP_004129031.1 319765095 10106538 complement(26517..26945) 1 NC_014911.1 KEGG: app:CAP2UW1_2427 thioesterase superfamily protein; manually curated; PFAM: thioesterase superfamily protein; thioesterase superfamily protein 26945 10106538 Alide_4450 Alicycliphilus denitrificans BC thioesterase superfamily protein YP_004129031.1 26517 R 596153 CDS YP_004129032.1 319765096 10106539 27927..29417 1 NC_014911.1 PFAM: Integrase catalytic region; KEGG: tmz:Tmz1t_4040 hypothetical protein; integrase catalytic region protein 29417 10106539 Alide_4451 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004129032.1 27927 D 596153 CDS YP_004129033.1 319765097 10106540 29404..30162 1 NC_014911.1 KEGG: tmz:Tmz1t_3158 IstB domain protein ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; istb domain protein ATP-binding protein 30162 10106540 Alide_4452 Alicycliphilus denitrificans BC istb domain protein ATP-binding protein YP_004129033.1 29404 D 596153 CDS YP_004129034.1 319765098 10106541 30159..30371 1 NC_014911.1 KEGG: tmz:Tmz1t_4038 ankyrin; hypothetical protein 30371 10106541 Alide_4453 Alicycliphilus denitrificans BC hypothetical protein YP_004129034.1 30159 D 596153 CDS YP_004129035.1 319765099 10106542 complement(30577..30861) 1 NC_014911.1 KEGG: tin:Tint_3241 addiction module toxin, RelE/StbE family; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module toxin, rele/stbe family 30861 10106542 Alide_4454 Alicycliphilus denitrificans BC addiction module toxin, rele/stbe family YP_004129035.1 30577 R 596153 CDS YP_004129036.1 319765100 10106543 complement(30858..31136) 1 NC_014911.1 KEGG: rme:Rmet_6342 antitoxin of a toxin/antitoxin system; antitoxin of a toxin/antitoxin system 31136 10106543 Alide_4455 Alicycliphilus denitrificans BC antitoxin of a toxin/antitoxin system YP_004129036.1 30858 R 596153 CDS YP_004129037.1 319765101 10106544 31390..31968 1 NC_014911.1 PFAM: Resolvase domain; KEGG: rpf:Rpic12D_4479 resolvase domain protein; resolvase domain protein 31968 10106544 Alide_4456 Alicycliphilus denitrificans BC resolvase domain protein YP_004129037.1 31390 D 596153 CDS YP_004129038.1 319765102 10106545 31965..34994 1 NC_014911.1 PFAM: transposase Tn3 family protein; KEGG: rpf:Rpic12D_4478 transposase Tn3 family protein; transposase tn3 family protein 34994 10106545 Alide_4457 Alicycliphilus denitrificans BC transposase tn3 family protein YP_004129038.1 31965 D 596153 CDS YP_004129039.1 319765103 10106548 37288..37626 1 NC_014911.1 PFAM: transposase IS3/IS911 family protein; KEGG: sml:Smlt2414 ISXac3 like transposase for insertion sequence element; transposase is3/is911 family protein 37626 10106548 Alide_4460 Alicycliphilus denitrificans BC transposase is3/is911 family protein YP_004129039.1 37288 D 596153 CDS YP_004129040.1 319765104 10106549 complement(37844..39013) 1 NC_014911.1 KEGG: ckr:CKR_2452 hypothetical protein; manually curated; PFAM: AAA-4 family protein; aaa-4 family protein 39013 10106549 Alide_4461 Alicycliphilus denitrificans BC aaa-4 family protein YP_004129040.1 37844 R 596153 CDS YP_004129041.1 319765105 10106550 complement(39142..39846) 1 NC_014911.1 PFAM: Glutathione S-transferase domain; KEGG: bpt:Bpet1280 glutathione transferase; glutathione s-transferase domain protein 39846 10106550 Alide_4462 Alicycliphilus denitrificans BC glutathione s-transferase domain protein YP_004129041.1 39142 R 596153 CDS YP_004129042.1 319765106 10106551 complement(39843..40457) 1 NC_014911.1 PFAM: regulatory protein TetR; KEGG: bpt:Bpet1592 TetR family transcriptional regulator; regulatory protein tetr 40457 10106551 Alide_4463 Alicycliphilus denitrificans BC regulatory protein tetr YP_004129042.1 39843 R 596153 CDS YP_004129043.1 319765107 10106552 complement(40521..41315) 1 NC_014911.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_2977 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase sdr 41315 10106552 Alide_4464 Alicycliphilus denitrificans BC short-chain dehydrogenase/reductase sdr YP_004129043.1 40521 R 596153 CDS YP_004129044.1 319765108 10106553 complement(41317..42033) 1 NC_014911.1 PFAM: Glutathione S-transferase domain; KEGG: xau:Xaut_2975 glutathione S-transferase domain-containing protein; glutathione s-transferase domain protein 42033 10106553 Alide_4465 Alicycliphilus denitrificans BC glutathione s-transferase domain protein YP_004129044.1 41317 R 596153 CDS YP_004129045.1 319765109 10106554 complement(42030..43019) 1 NC_014911.1 PFAM: hypothetical protein; KEGG: bpy:Bphyt_5155 hypothetical protein; hypothetical protein 43019 10106554 Alide_4466 Alicycliphilus denitrificans BC hypothetical protein YP_004129045.1 42030 R 596153 CDS YP_004129046.1 319765110 10106555 complement(43016..43678) 1 NC_014911.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rcu:RCOM_2149470 bacterioferritin comigratory protein, putative; alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen 43678 10106555 Alide_4467 Alicycliphilus denitrificans BC alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen YP_004129046.1 43016 R 596153 CDS YP_004129047.1 319765111 10106556 complement(44017..44298) 1 NC_014911.1 KEGG: sjp:SJA_P1-00290 RelE/StbE-family addiction module toxin; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module toxin, rele/stbe family 44298 10106556 Alide_4468 Alicycliphilus denitrificans BC addiction module toxin, rele/stbe family YP_004129047.1 44017 R 596153 CDS YP_004129048.1 319765112 10106557 complement(44285..44551) 1 NC_014911.1 KEGG: afr:AFE_1589 DNA-damage-inducible protein J; TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; addiction module antitoxin, relb/dinj family 44551 10106557 Alide_4469 Alicycliphilus denitrificans BC addiction module antitoxin, relb/dinj family YP_004129048.1 44285 R 596153 CDS YP_004129049.1 319765113 10106558 complement(45090..46310) 1 NC_014911.1 PFAM: TrfA family protein; KEGG: bam:Bamb_6593 TrfA family protein; trfa family protein 46310 10106558 Alide_4470 Alicycliphilus denitrificans BC trfa family protein YP_004129049.1 45090 R 596153 CDS YP_004129050.1 319765114 10106559 complement(46357..46698) 1 NC_014911.1 KEGG: bam:Bamb_6592 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 46698 10106559 Alide_4471 Alicycliphilus denitrificans BC single-strand binding protein YP_004129050.1 46357 R 596153 CDS YP_004129051.1 319765115 10106560 46812..47174 1 NC_014911.1 KEGG: reu:Reut_D6501 conjugal transfer protein TrbA; PFAM: hypothetical protein; SMART: hypothetical protein; hypothetical protein 47174 10106560 Alide_4472 Alicycliphilus denitrificans BC hypothetical protein YP_004129051.1 46812 D 596153 CDS YP_004129052.1 319765116 10106561 47484..48446 1 NC_014911.1 TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: bam:Bamb_6635 conjugal transfer ATPase TrbB; SMART: AAA ATPase; P-type conjugative transfer atpase trbb 48446 10106561 Alide_4473 Alicycliphilus denitrificans BC P-type conjugative transfer atpase trbb YP_004129052.1 47484 D 596153 CDS YP_004129053.1 319765117 10106562 48463..48927 1 NC_014911.1 PFAM: Conjugal transfer protein TrbC; KEGG: bam:Bamb_6634 conjugal transfer protein TrbC; conjugal transfer protein trbc 48927 10106562 Alide_4474 Alicycliphilus denitrificans BC conjugal transfer protein trbc YP_004129053.1 48463 D 596153 CDS YP_004129054.1 319765118 10106563 48931..49242 1 NC_014911.1 KEGG: ajs:Ajs_4272 conjugal transfer protein TrbD; conjugal transfer protein trbd 49242 10106563 Alide_4475 Alicycliphilus denitrificans BC conjugal transfer protein trbd YP_004129054.1 48931 D 596153 CDS YP_004129055.1 319765119 10106564 49239..51797 1 NC_014911.1 TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; KEGG: bam:Bamb_6632 conjugal transfer protein TrbE; SMART: AAA ATPase; type IV secretion/conjugal transfer atpase, virb4 family 51797 10106564 Alide_4476 Alicycliphilus denitrificans BC type IV secretion/conjugal transfer atpase, virb4 family YP_004129055.1 49239 D 596153 CDS YP_004129056.1 319765120 10106565 51794..52576 1 NC_014911.1 KEGG: bam:Bamb_6631 conjugal transfer protein TrbF; conjugal transfer protein trbf 52576 10106565 Alide_4477 Alicycliphilus denitrificans BC conjugal transfer protein trbf YP_004129056.1 51794 D 596153 CDS YP_004129057.1 319765121 10106566 52594..53493 1 NC_014911.1 KEGG: bam:Bamb_6630 conjugal transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; P-type conjugative transfer protein trbg 53493 10106566 Alide_4478 Alicycliphilus denitrificans BC P-type conjugative transfer protein trbg YP_004129057.1 52594 D 596153 CDS YP_004129058.1 319765122 10106567 53496..53984 1 NC_014911.1 KEGG: bam:Bamb_6629 conjugal transfer protein TrbH; conjugal transfer protein trbh 53984 10106567 Alide_4479 Alicycliphilus denitrificans BC conjugal transfer protein trbh YP_004129058.1 53496 D 596153 CDS YP_004129059.1 319765123 10106568 53989..55410 1 NC_014911.1 PFAM: conjugation TrbI family protein; KEGG: bam:Bamb_6628 conjugal transfer protein TrbI; conjugation trbi family protein 55410 10106568 Alide_4480 Alicycliphilus denitrificans BC conjugation trbi family protein YP_004129059.1 53989 D 596153 CDS YP_004129060.1 319765124 10106569 55431..56195 1 NC_014911.1 KEGG: bam:Bamb_6627 conjugal transfer protein TrbJ; TIGRFAM: P-type conjugative transfer protein TrbJ; PFAM: type IV secretion system family protein; P-type conjugative transfer protein trbj 56195 10106569 Alide_4481 Alicycliphilus denitrificans BC P-type conjugative transfer protein trbj YP_004129060.1 55431 D 596153 CDS YP_004129061.1 319765125 10106570 56205..56432 1 NC_014911.1 KEGG: bam:Bamb_6626 entry exclusion protein TrbK; entry exclusion protein trbk 56432 10106570 Alide_4482 Alicycliphilus denitrificans BC entry exclusion protein trbk YP_004129061.1 56205 D 596153 CDS YP_004129062.1 319765126 10106571 56443..58161 1 NC_014911.1 KEGG: bam:Bamb_6625 TrbL/VirB6 plasmid conjugal transfer protein; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; P-type conjugative transfer protein trbl 58161 10106571 Alide_4483 Alicycliphilus denitrificans BC P-type conjugative transfer protein trbl YP_004129062.1 56443 D 596153 CDS YP_004129063.1 319765127 10106572 58179..58766 1 NC_014911.1 KEGG: bam:Bamb_6624 conjugal transfer protein TrbM; conjugal transfer protein trbm 58766 10106572 Alide_4484 Alicycliphilus denitrificans BC conjugal transfer protein trbm YP_004129063.1 58179 D 596153 CDS YP_004129064.1 319765128 10106573 58780..59415 1 NC_014911.1 PFAM: Lytic transglycosylase catalytic; KEGG: bam:Bamb_6623 conjugal transfer protein TrbN; lytic transglycosylase catalytic 59415 10106573 Alide_4485 Alicycliphilus denitrificans BC lytic transglycosylase catalytic YP_004129064.1 58780 D 596153 CDS YP_004129065.1 319765129 10106574 59444..59710 1 NC_014911.1 KEGG: bam:Bamb_6622 hypothetical protein; hypothetical protein 59710 10106574 Alide_4486 Alicycliphilus denitrificans BC hypothetical protein YP_004129065.1 59444 D 596153 CDS YP_004129066.1 319765130 10106575 59710..60408 1 NC_014911.1 KEGG: bam:Bamb_6621 conjugal transfer protein TrbP; conjugal transfer protein trbp 60408 10106575 Alide_4487 Alicycliphilus denitrificans BC conjugal transfer protein trbp YP_004129066.1 59710 D 596153 CDS YP_004129067.1 319765131 10106576 60424..60855 1 NC_014911.1 KEGG: ajs:Ajs_4259 hypothetical protein; hypothetical protein 60855 10106576 Alide_4488 Alicycliphilus denitrificans BC hypothetical protein YP_004129067.1 60424 D 596153 CDS YP_004129068.1 319765132 10106577 complement(61008..61583) 1 NC_014911.1 PFAM: Resolvase domain; KEGG: tmz:Tmz1t_2147 resolvase domain protein; resolvase domain protein 61583 10106577 Alide_4489 Alicycliphilus denitrificans BC resolvase domain protein YP_004129068.1 61008 R 596153 CDS YP_004129069.1 319765133 10106578 complement(61710..61946) 1 NC_014911.1 manually curated; TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: tmz:Tmz1t_2146 addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module toxin, rele/stbe family 61946 10106578 Alide_4490 Alicycliphilus denitrificans BC addiction module toxin, rele/stbe family YP_004129069.1 61710 R 596153 CDS YP_004129070.1 319765134 10106579 complement(61983..64949) 1 NC_014911.1 PFAM: transposase Tn3 family protein; KEGG: tmz:Tmz1t_2145 transposase Tn3 family protein; transposase tn3 family protein 64949 10106579 Alide_4491 Alicycliphilus denitrificans BC transposase tn3 family protein YP_004129070.1 61983 R 596153 CDS YP_004129071.1 319765135 10106581 65117..66835 1 NC_014911.1 PFAM: Integrase catalytic region; Transposase-like Mu; KEGG: rme:Rmet_4045 transposase; integrase catalytic region protein 66835 10106581 Alide_4493 Alicycliphilus denitrificans BC integrase catalytic region protein YP_004129071.1 65117 D 596153 CDS YP_004129072.1 319765136 10106582 66838..67746 1 NC_014911.1 PFAM: TniB family protein; KEGG: tin:Tint_3210 TniB family protein; tnib family protein 67746 10106582 Alide_4494 Alicycliphilus denitrificans BC tnib family protein YP_004129072.1 66838 D 596153 CDS YP_004129073.1 319765137 10106583 67797..68960 1 NC_014911.1 KEGG: bxe:Bxe_C1175 transposition protein TniQ; transposition protein tniq 68960 10106583 Alide_4495 Alicycliphilus denitrificans BC transposition protein tniq YP_004129073.1 67797 D 596153 CDS YP_004129074.1 319765138 10106584 69021..69635 1 NC_014911.1 PFAM: Resolvase domain; KEGG: enc:ECL_A229 TniR protein; resolvase domain protein 69635 10106584 Alide_4496 Alicycliphilus denitrificans BC resolvase domain protein YP_004129074.1 69021 D 596153 CDS YP_004129075.1 319765139 10106585 complement(69688..69924) 1 NC_014911.1 PFAM: MerE family protein; KEGG: enc:ECL_A230 mercury resistance protein MerE; mere family protein 69924 10106585 Alide_4497 Alicycliphilus denitrificans BC mere family protein YP_004129075.1 69688 R 596153 CDS YP_004129076.1 319765140 10106586 complement(69921..70286) 1 NC_014911.1 TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein MerR; KEGG: enc:ECL_A231 mercury repressor protein, MerD; SMART: regulatory protein MerR; mercuric resistance transcriptional repressor protein merd 70286 10106586 Alide_4498 Alicycliphilus denitrificans BC mercuric resistance transcriptional repressor protein merd YP_004129076.1 69921 R 596153 CDS YP_004129077.1 319765141 10106587 complement(70303..71949) 1 NC_014911.1 KEGG: enc:ECL_A232 mercuric reductase; TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; mercuric reductase 71949 10106587 Alide_4499 Alicycliphilus denitrificans BC mercuric reductase YP_004129077.1 70303 R 596153 CDS YP_004129078.1 319765142 10106588 complement(71946..72191) 1 NC_014911.1 KEGG: enc:ECL_A233 mercury ion transport transmembrane protein MerF; mercury ion transport transmembrane protein merf 72191 10106588 Alide_4500 Alicycliphilus denitrificans BC mercury ion transport transmembrane protein merf YP_004129078.1 71946 R 596153 CDS YP_004129079.1 319765143 10106589 complement(72194..72469) 1 NC_014911.1 KEGG: enc:ECL_A234 mercury ion transport protein periplasmic component MerP; TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport protein periplasmic component 72469 10106589 Alide_4501 Alicycliphilus denitrificans BC mercuric transport protein periplasmic component YP_004129079.1 72194 R 596153 CDS YP_004129080.1 319765144 10106590 complement(72485..72835) 1 NC_014911.1 PFAM: Mercuric transport protein MerT; KEGG: enc:ECL_A235 mercury ion transport integral membrane protein MerT; mercuric transport protein mert 72835 10106590 Alide_4502 Alicycliphilus denitrificans BC mercuric transport protein mert YP_004129080.1 72485 R 596153 CDS YP_004129081.1 319765145 10106591 72907..73341 1 NC_014911.1 TIGRFAM: Hg+2-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: enc:ECL_A236 transcriptional regulator MerR; SMART: regulatory protein MerR; Hg+2-responsive transcriptional regulator 73341 10106591 Alide_4503 Alicycliphilus denitrificans BC Hg+2-responsive transcriptional regulator YP_004129081.1 72907 D 596153 CDS YP_004129082.1 319765146 10106592 complement(73466..74008) 1 NC_014911.1 manually curated; KEGG: aba:Acid345_3707 hypothetical protein; hypothetical protein 74008 10106592 Alide_4504 Alicycliphilus denitrificans BC hypothetical protein YP_004129082.1 73466 R 596153 CDS YP_004129083.1 319765147 10106593 complement(74042..74575) 1 NC_014911.1 KEGG: xcv:XCV2347 hypothetical protein; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase like protein, ahpd family 74575 10106593 Alide_4505 Alicycliphilus denitrificans BC alkylhydroperoxidase like protein, ahpd family YP_004129083.1 74042 R 596153 CDS YP_004129084.1 319765148 10106594 74693..75535 1 NC_014911.1 KEGG: xcv:XCV2346 AraC family transcriptional regulator; PFAM: hypothetical protein; SMART: Helix-turn-helix, AraC domain; hypothetical protein 75535 10106594 Alide_4506 Alicycliphilus denitrificans BC hypothetical protein YP_004129084.1 74693 D 596153 CDS YP_004129085.1 319765149 10106595 75713..76003 1 NC_014911.1 PFAM: DNA polymerase subunit beta; KEGG: tmz:Tmz1t_2148 DNA polymerase subunit beta; DNA polymerase subunit beta 76003 10106595 Alide_4507 Alicycliphilus denitrificans BC DNA polymerase subunit beta YP_004129085.1 75713 D 596153 CDS YP_004129086.1 319765150 10106596 76000..76386 1 NC_014911.1 PFAM: hypothetical protein; KEGG: tmz:Tmz1t_2149 hypothetical protein; hypothetical protein 76386 10106596 Alide_4508 Alicycliphilus denitrificans BC hypothetical protein YP_004129086.1 76000 D 596153 CDS YP_004129087.1 319765151 10106597 76402..76575 1 NC_014911.1 KEGG: bvi:Bcep1808_7240 hypothetical protein; hypothetical protein 76575 10106597 Alide_4509 Alicycliphilus denitrificans BC hypothetical protein YP_004129087.1 76402 D 596153 CDS YP_004129088.1 319765152 10106598 76605..76979 1 NC_014911.1 KEGG: tmz:Tmz1t_2150 cupin 2 conserved barrel domain protein; manually curated; PFAM: Cupin 2 conserved barrel domain protein; cupin 2 conserved barrel domain protein 76979 10106598 Alide_4510 Alicycliphilus denitrificans BC cupin 2 conserved barrel domain protein YP_004129088.1 76605 D 596153 CDS YP_004129089.1 319765153 10106599 77234..77560 1 NC_014911.1 KEGG: tmz:Tmz1t_2151 hypothetical protein; hypothetical protein 77560 10106599 Alide_4511 Alicycliphilus denitrificans BC hypothetical protein YP_004129089.1 77234 D 596153 CDS YP_004129090.1 319765154 10106600 77557..78057 1 NC_014911.1 KEGG: tmz:Tmz1t_2152 hypothetical protein; hypothetical protein 78057 10106600 Alide_4512 Alicycliphilus denitrificans BC hypothetical protein YP_004129090.1 77557 D 596153 CDS YP_004129091.1 319765155 10106601 78054..78425 1 NC_014911.1 KEGG: tmz:Tmz1t_2153 hypothetical protein; hypothetical protein 78425 10106601 Alide_4513 Alicycliphilus denitrificans BC hypothetical protein YP_004129091.1 78054 D 596153 CDS YP_004129092.1 319765156 10106602 78419..78976 1 NC_014911.1 PFAM: Resolvase domain; Resolvase hypothetical protein; KEGG: tmz:Tmz1t_2154 resolvase domain protein; resolvase domain protein 78976 10106602 Alide_4514 Alicycliphilus denitrificans BC resolvase domain protein YP_004129092.1 78419 D 596153 CDS