-- dump date   	20240506_003451
-- class       	Genbank::Feature
-- table       	feature
-- table       	main
-- field 1	id
-- field 2	type
-- field 3	name
-- field 4	contig
-- field 5	start_pos
-- field 6	end_pos
-- field 7	strand
-- field 8	description
-- field 9	chrom_position
-- field 10	organism
-- field 11	GeneID
-- header
-- id	type	name	contig	start_pos	end_pos	strand	description	chrom_position	organism	GeneID
596153000001	SEQ_END	SEQ_END	NC_014910.1	4637013	4637013	DR	NC_014910.1; contig end	4637013..4637013	Alicycliphilus denitrificans BC	<NA>
596153000002	SEQ_END	SEQ_END	NC_014908.1	119718	119718	DR	NC_014908.1; contig end	119718..119718	Alicycliphilus denitrificans BC	<NA>
596153000003	SEQ_END	SEQ_END	NC_014911.1	78982	78982	DR	NC_014911.1; contig end	78982..78982	Alicycliphilus denitrificans BC	<NA>
ALIDE_RS00005	CDS	dnaA	NC_014910.1	206	1627	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosomal replication initiator protein DnaA	206..1627	Alicycliphilus denitrificans BC	
ALIDE_RS00010	CDS	dnaN	NC_014910.1	1754	2860	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit beta	1754..2860	Alicycliphilus denitrificans BC	
ALIDE_RS00015	CDS	gyrB	NC_014910.1	2979	5561	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase (ATP-hydrolyzing) subunit B	2979..5561	Alicycliphilus denitrificans BC	
ALIDE_RS00020	CDS	ALIDE_RS00020	NC_014910.1	5636	6049	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YkgJ family cysteine cluster protein	5636..6049	Alicycliphilus denitrificans BC	
ALIDE_RS00025	CDS	ALIDE_RS00025	NC_014910.1	6074	7267	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(6074..7267)	Alicycliphilus denitrificans BC	
ALIDE_RS00030	CDS	ALIDE_RS00030	NC_014910.1	7277	8134	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase-related protein	complement(7277..8134)	Alicycliphilus denitrificans BC	
ALIDE_RS00035	CDS	ALIDE_RS00035	NC_014910.1	8188	9030	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	8188..9030	Alicycliphilus denitrificans BC	
ALIDE_RS00040	CDS	ALIDE_RS00040	NC_014910.1	9027	10049	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(9027..10049)	Alicycliphilus denitrificans BC	
ALIDE_RS00045	CDS	ALIDE_RS00045	NC_014910.1	10084	11856	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyclic terpene utilization AtuA family protein	complement(10084..11856)	Alicycliphilus denitrificans BC	
ALIDE_RS00050	CDS	ALIDE_RS00050	NC_014910.1	11853	13865	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxylase subunit	complement(11853..13865)	Alicycliphilus denitrificans BC	
ALIDE_RS00055	CDS	ALIDE_RS00055	NC_014910.1	13882	15045	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(13882..15045)	Alicycliphilus denitrificans BC	
ALIDE_RS00060	CDS	ALIDE_RS00060	NC_014910.1	15177	16787	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxyl transferase domain-containing protein	complement(15177..16787)	Alicycliphilus denitrificans BC	
ALIDE_RS00065	CDS	ALIDE_RS00065	NC_014910.1	16899	17204	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acylphosphatase	complement(16899..17204)	Alicycliphilus denitrificans BC	
ALIDE_RS00070	CDS	ALIDE_RS00070	NC_014910.1	17244	17516	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4Fe-4S binding protein	17244..17516	Alicycliphilus denitrificans BC	
ALIDE_RS00075	CDS	ALIDE_RS00075	NC_014910.1	17834	19219	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; homoserine dehydrogenase	17834..19219	Alicycliphilus denitrificans BC	
ALIDE_RS00080	CDS	dinG	NC_014910.1	19379	21553	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase DinG	19379..21553	Alicycliphilus denitrificans BC	
ALIDE_RS00085	CDS	ALIDE_RS00085	NC_014910.1	21566	22195	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3'-5' exonuclease	21566..22195	Alicycliphilus denitrificans BC	
ALIDE_RS00090	CDS	ALIDE_RS00090	NC_014910.1	22262	22741	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; C40 family peptidase	22262..22741	Alicycliphilus denitrificans BC	
ALIDE_RS00095	CDS	ALIDE_RS00095	NC_014910.1	22780	23883	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-7-phosphoheptulonate synthase	22780..23883	Alicycliphilus denitrificans BC	
ALIDE_RS00100	CDS	ALIDE_RS00100	NC_014910.1	24476	28096	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; EAL domain-containing protein	24476..28096	Alicycliphilus denitrificans BC	
ALIDE_RS00105	CDS	ALIDE_RS00105	NC_014910.1	28163	28966	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	complement(28163..28966)	Alicycliphilus denitrificans BC	
ALIDE_RS00110	CDS	ALIDE_RS00110	NC_014910.1	29153	30124	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	29153..30124	Alicycliphilus denitrificans BC	
ALIDE_RS00115	CDS	ALIDE_RS00115	NC_014910.1	30135	31163	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(30135..31163)	Alicycliphilus denitrificans BC	
ALIDE_RS00120	CDS	ALIDE_RS00120	NC_014910.1	31168	32355	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(31168..32355)	Alicycliphilus denitrificans BC	
ALIDE_RS00125	CDS	ALIDE_RS00125	NC_014910.1	32402	33367	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(32402..33367)	Alicycliphilus denitrificans BC	
ALIDE_RS00130	CDS	ALIDE_RS00130	NC_014910.1	33405	35498	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate--CoA ligase family protein	complement(33405..35498)	Alicycliphilus denitrificans BC	
ALIDE_RS00135	CDS	ALIDE_RS00135	NC_014910.1	35513	36313	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase	complement(35513..36313)	Alicycliphilus denitrificans BC	
ALIDE_RS00140	CDS	ALIDE_RS00140	NC_014910.1	36408	37172	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	36408..37172	Alicycliphilus denitrificans BC	
ALIDE_RS00145	CDS	ALIDE_RS00145	NC_014910.1	37432	38037	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyloxyacyl hydrolase	complement(37432..38037)	Alicycliphilus denitrificans BC	
ALIDE_RS00150	CDS	ALIDE_RS00150	NC_014910.1	38152	38745	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Spy/CpxP family protein refolding chaperone	complement(38152..38745)	Alicycliphilus denitrificans BC	
ALIDE_RS00155	CDS	ALIDE_RS00155	NC_014910.1	38962	39903	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; recombination-associated protein RdgC	38962..39903	Alicycliphilus denitrificans BC	
ALIDE_RS00160	CDS	ALIDE_RS00160	NC_014910.1	39923	41176	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside recognition domain-containing protein	39923..41176	Alicycliphilus denitrificans BC	
ALIDE_RS00165	CDS	ALIDE_RS00165	NC_014910.1	41657	41908	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3297 family protein	41657..41908	Alicycliphilus denitrificans BC	
ALIDE_RS00170	CDS	ALIDE_RS00170	NC_014910.1	41877	43754	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-galactosidase	complement(41877..43754)	Alicycliphilus denitrificans BC	
ALIDE_RS00175	CDS	cueR	NC_014910.1	43852	44289	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Cu(I)-responsive transcriptional regulator	complement(43852..44289)	Alicycliphilus denitrificans BC	
ALIDE_RS00180	CDS	ALIDE_RS00180	NC_014910.1	44286	44483	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter	complement(44286..44483)	Alicycliphilus denitrificans BC	
ALIDE_RS00185	CDS	ALIDE_RS00185	NC_014910.1	44653	46884	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heavy metal translocating P-type ATPase	44653..46884	Alicycliphilus denitrificans BC	
ALIDE_RS00190	CDS	ALIDE_RS00190	NC_014910.1	47011	48660	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	47011..48660	Alicycliphilus denitrificans BC	
ALIDE_RS00195	CDS	ALIDE_RS00195	NC_014910.1	48816	51911	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CusA/CzcA family heavy metal efflux RND transporter	complement(48816..51911)	Alicycliphilus denitrificans BC	
ALIDE_RS00200	CDS	ALIDE_RS00200	NC_014910.1	51908	53161	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	complement(51908..53161)	Alicycliphilus denitrificans BC	
ALIDE_RS00205	CDS	ALIDE_RS00205	NC_014910.1	53193	54479	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TolC family protein	complement(53193..54479)	Alicycliphilus denitrificans BC	
ALIDE_RS00210	CDS	ALIDE_RS00210	NC_014910.1	54567	55292	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	54567..55292	Alicycliphilus denitrificans BC	
ALIDE_RS00215	CDS	ALIDE_RS00215	NC_014910.1	55289	56716	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase	55289..56716	Alicycliphilus denitrificans BC	
ALIDE_RS00220	CDS	ALIDE_RS00220	NC_014910.1	56742	57857	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alkene reductase	complement(56742..57857)	Alicycliphilus denitrificans BC	
ALIDE_RS00225	CDS	gstA	NC_014910.1	57920	58528	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione transferase GstA	complement(57920..58528)	Alicycliphilus denitrificans BC	
ALIDE_RS00230	CDS	ALIDE_RS00230	NC_014910.1	58561	58857	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YkgJ family cysteine cluster protein	complement(58561..58857)	Alicycliphilus denitrificans BC	
ALIDE_RS00235	CDS	ALIDE_RS00235	NC_014910.1	58864	59442	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-dependent oxidoreductase	complement(58864..59442)	Alicycliphilus denitrificans BC	
ALIDE_RS00240	CDS	mnmG	NC_014910.1	59574	61553	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	59574..61553	Alicycliphilus denitrificans BC	
ALIDE_RS00245	CDS	ALIDE_RS00245	NC_014910.1	61537	61776	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	61537..61776	Alicycliphilus denitrificans BC	
ALIDE_RS00250	CDS	rsmG	NC_014910.1	61769	62416	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	61769..62416	Alicycliphilus denitrificans BC	
ALIDE_RS00255	CDS	ALIDE_RS00255	NC_014910.1	62453	63067	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysE family translocator	62453..63067	Alicycliphilus denitrificans BC	
ALIDE_RS00260	CDS	ALIDE_RS00260	NC_014910.1	63076	63846	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AAA family ATPase	63076..63846	Alicycliphilus denitrificans BC	
ALIDE_RS00265	CDS	ALIDE_RS00265	NC_014910.1	63931	64473	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	63931..64473	Alicycliphilus denitrificans BC	
ALIDE_RS00270	CDS	ALIDE_RS00270	NC_014910.1	64479	65396	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParB/RepB/Spo0J family partition protein	64479..65396	Alicycliphilus denitrificans BC	
ALIDE_RS00275	CDS	ALIDE_RS00275	NC_014910.1	65421	66200	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	65421..66200	Alicycliphilus denitrificans BC	
ALIDE_RS00280	CDS	ALIDE_RS00280	NC_014910.1	66260	67300	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-binding domain-containing protein	66260..67300	Alicycliphilus denitrificans BC	
ALIDE_RS00285	CDS	ALIDE_RS00285	NC_014910.1	67380	68285	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix transcriptional regulator	complement(67380..68285)	Alicycliphilus denitrificans BC	
ALIDE_RS00290	CDS	ALIDE_RS00290	NC_014910.1	68345	69610	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	68345..69610	Alicycliphilus denitrificans BC	
ALIDE_RS00295	CDS	ALIDE_RS00295	NC_014910.1	69612	70421	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive ion channel family protein	complement(69612..70421)	Alicycliphilus denitrificans BC	
ALIDE_RS00300	CDS	ALIDE_RS00300	NC_014910.1	70620	72044	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-linked oxidase C-terminal domain-containing protein	complement(70620..72044)	Alicycliphilus denitrificans BC	
ALIDE_RS00305	CDS	ALIDE_RS00305	NC_014910.1	72821	73033	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(72821..73033)	Alicycliphilus denitrificans BC	
ALIDE_RS00310	CDS	ALIDE_RS00310	NC_014910.1	73036	73581	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage virion morphogenesis protein	complement(73036..73581)	Alicycliphilus denitrificans BC	
ALIDE_RS00315	CDS	ALIDE_RS00315	NC_014910.1	73688	74890	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage minor head protein	complement(73688..74890)	Alicycliphilus denitrificans BC	
ALIDE_RS00320	CDS	ALIDE_RS00320	NC_014910.1	74883	76379	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF935 family protein	complement(74883..76379)	Alicycliphilus denitrificans BC	
ALIDE_RS00325	CDS	ALIDE_RS00325	NC_014910.1	76376	77050	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(76376..77050)	Alicycliphilus denitrificans BC	
ALIDE_RS00330	CDS	ALIDE_RS00330	NC_014910.1	77062	77247	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(77062..77247)	Alicycliphilus denitrificans BC	
ALIDE_RS00335	CDS	ALIDE_RS00335	NC_014910.1	77251	77721	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(77251..77721)	Alicycliphilus denitrificans BC	
ALIDE_RS23925	CDS	ALIDE_RS23925	NC_014910.1	77835	78101	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	77835..78101	Alicycliphilus denitrificans BC	
ALIDE_RS00345	CDS	ALIDE_RS00345	NC_014910.1	78166	78771	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	78166..78771	Alicycliphilus denitrificans BC	
ALIDE_RS22975	CDS	ALIDE_RS22975	NC_014910.1	78805	79977	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	78805..79977	Alicycliphilus denitrificans BC	
ALIDE_RS00360	CDS	ALIDE_RS00360	NC_014910.1	79986	80393	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	79986..80393	Alicycliphilus denitrificans BC	
ALIDE_RS00365	CDS	ALIDE_RS00365	NC_014910.1	80393	80824	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	80393..80824	Alicycliphilus denitrificans BC	
ALIDE_RS00370	CDS	ALIDE_RS00370	NC_014910.1	80835	82826	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	80835..82826	Alicycliphilus denitrificans BC	
ALIDE_RS00375	CDS	ALIDE_RS00375	NC_014910.1	82819	83040	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	82819..83040	Alicycliphilus denitrificans BC	
ALIDE_RS00380	CDS	ALIDE_RS00380	NC_014910.1	83191	83982	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA adenine methylase	83191..83982	Alicycliphilus denitrificans BC	
ALIDE_RS24650	CDS	ALIDE_RS24650	NC_014910.1	84065	84265	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(84065..84265)	Alicycliphilus denitrificans BC	
ALIDE_RS00390	CDS	ALIDE_RS00390	NC_014910.1	84303	84878	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cob(I)yrinic acid a,c-diamide adenosyltransferase	84303..84878	Alicycliphilus denitrificans BC	
ALIDE_RS00395	CDS	ALIDE_RS00395	NC_014910.1	84939	85361	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hotdog fold thioesterase	complement(84939..85361)	Alicycliphilus denitrificans BC	
ALIDE_RS00400	CDS	ALIDE_RS00400	NC_014910.1	85444	86964	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA hydrolase/transferase family protein	complement(85444..86964)	Alicycliphilus denitrificans BC	
ALIDE_RS00405	CDS	ALIDE_RS00405	NC_014910.1	87122	87856	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; zf-TFIIB domain-containing protein	87122..87856	Alicycliphilus denitrificans BC	
ALIDE_RS00410	CDS	ALIDE_RS00410	NC_014910.1	87911	88816	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	87911..88816	Alicycliphilus denitrificans BC	
ALIDE_RS00415	CDS	ALIDE_RS00415	NC_014910.1	89022	89951	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	89022..89951	Alicycliphilus denitrificans BC	
ALIDE_RS00420	CDS	ALIDE_RS00420	NC_014910.1	90000	90806	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	90000..90806	Alicycliphilus denitrificans BC	
ALIDE_RS00425	CDS	ALIDE_RS00425	NC_014910.1	90808	91569	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	90808..91569	Alicycliphilus denitrificans BC	
ALIDE_RS00430	CDS	ALIDE_RS00430	NC_014910.1	91601	92116	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymuconolactone decarboxylase family protein	91601..92116	Alicycliphilus denitrificans BC	
ALIDE_RS00435	CDS	ALIDE_RS00435	NC_014910.1	92123	93409	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; solute carrier family 23 protein	complement(92123..93409)	Alicycliphilus denitrificans BC	
ALIDE_RS00440	CDS	ALIDE_RS00440	NC_014910.1	93561	94271	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FkbM family methyltransferase	93561..94271	Alicycliphilus denitrificans BC	
ALIDE_RS00445	CDS	ubiM	NC_014910.1	94398	95666	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-demethoxyubiquinol-8 5-hydroxylase UbiM	complement(94398..95666)	Alicycliphilus denitrificans BC	
ALIDE_RS00450	CDS	ALIDE_RS00450	NC_014910.1	95836	97911	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetoacetate--CoA ligase	95836..97911	Alicycliphilus denitrificans BC	
ALIDE_RS00455	CDS	ALIDE_RS00455	NC_014910.1	97943	98872	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(97943..98872)	Alicycliphilus denitrificans BC	
ALIDE_RS00460	CDS	ALIDE_RS00460	NC_014910.1	98988	99974	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	98988..99974	Alicycliphilus denitrificans BC	
ALIDE_RS00465	CDS	ALIDE_RS00465	NC_014910.1	100000	101157	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	100000..101157	Alicycliphilus denitrificans BC	
ALIDE_RS00470	CDS	ALIDE_RS00470	NC_014910.1	101177	102202	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	101177..102202	Alicycliphilus denitrificans BC	
ALIDE_RS00475	CDS	ALIDE_RS00475	NC_014910.1	102308	103096	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonase/enoyl-CoA hydratase family protein	102308..103096	Alicycliphilus denitrificans BC	
ALIDE_RS00480	CDS	pssA	NC_014910.1	103126	103749	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diacylglycerol--serine O-phosphatidyltransferase	103126..103749	Alicycliphilus denitrificans BC	
ALIDE_RS00485	CDS	ALIDE_RS00485	NC_014910.1	103936	106059	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor	103936..106059	Alicycliphilus denitrificans BC	
ALIDE_RS00490	CDS	ALIDE_RS00490	NC_014910.1	106062	107231	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY domain-containing protein	106062..107231	Alicycliphilus denitrificans BC	
ALIDE_RS00495	CDS	ALIDE_RS00495	NC_014910.1	107228	107437	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	107228..107437	Alicycliphilus denitrificans BC	
ALIDE_RS00500	CDS	minC	NC_014910.1	107604	108365	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; septum site-determining protein MinC	107604..108365	Alicycliphilus denitrificans BC	
ALIDE_RS00505	CDS	minD	NC_014910.1	108420	109235	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; septum site-determining protein MinD	108420..109235	Alicycliphilus denitrificans BC	
ALIDE_RS00510	CDS	minE	NC_014910.1	109242	109511	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division topological specificity factor MinE	109242..109511	Alicycliphilus denitrificans BC	
ALIDE_RS00515	CDS	ALIDE_RS00515	NC_014910.1	109535	110473	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(109535..110473)	Alicycliphilus denitrificans BC	
ALIDE_RS00520	CDS	ALIDE_RS00520	NC_014910.1	110587	111564	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	110587..111564	Alicycliphilus denitrificans BC	
ALIDE_RS00525	CDS	ALIDE_RS00525	NC_014910.1	111592	112755	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; mandelate racemase/muconate lactonizing enzyme family protein	111592..112755	Alicycliphilus denitrificans BC	
ALIDE_RS00530	CDS	ALIDE_RS00530	NC_014910.1	112786	113325	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flavin reductase family protein	complement(112786..113325)	Alicycliphilus denitrificans BC	
ALIDE_RS00535	CDS	ALIDE_RS00535	NC_014910.1	113432	114208	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	113432..114208	Alicycliphilus denitrificans BC	
ALIDE_RS00540	CDS	ALIDE_RS00540	NC_014910.1	114282	114947	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	114282..114947	Alicycliphilus denitrificans BC	
ALIDE_RS00545	CDS	ALIDE_RS00545	NC_014910.1	114895	115317	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein	complement(114895..115317)	Alicycliphilus denitrificans BC	
ALIDE_RS00550	CDS	ALIDE_RS00550	NC_014910.1	115419	116264	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; metallophosphoesterase	complement(115419..116264)	Alicycliphilus denitrificans BC	
ALIDE_RS00555	CDS	ALIDE_RS00555	NC_014910.1	116291	117262	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(116291..117262)	Alicycliphilus denitrificans BC	
ALIDE_RS00560	CDS	ALIDE_RS00560	NC_014910.1	117388	117828	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	117388..117828	Alicycliphilus denitrificans BC	
ALIDE_RS00565	CDS	ALIDE_RS00565	NC_014910.1	117968	119836	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate carboxykinase (GTP)	complement(117968..119836)	Alicycliphilus denitrificans BC	
ALIDE_RS24545	CDS	ALIDE_RS24545	NC_014910.1	120176	120337	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(120176..120337)	Alicycliphilus denitrificans BC	
ALIDE_RS00570	CDS	ALIDE_RS00570	NC_014910.1	120427	121629	R	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine ammonia-lyase	complement(120427..>121629)	Alicycliphilus denitrificans BC	
ALIDE_RS00575	CDS	ALIDE_RS00575	NC_014910.1	121729	123390	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(121729..123390)	Alicycliphilus denitrificans BC	
ALIDE_RS00580	CDS	mgtA	NC_014910.1	123446	126166	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium-translocating P-type ATPase	complement(123446..126166)	Alicycliphilus denitrificans BC	
ALIDE_RS00585	CDS	ALIDE_RS00585	NC_014910.1	126301	127332	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; homocysteine S-methyltransferase family protein	complement(126301..127332)	Alicycliphilus denitrificans BC	
ALIDE_RS00590	CDS	ALIDE_RS00590	NC_014910.1	127329	128219	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(127329..128219)	Alicycliphilus denitrificans BC	
ALIDE_RS00595	CDS	ALIDE_RS00595	NC_014910.1	128355	129518	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(128355..129518)	Alicycliphilus denitrificans BC	
ALIDE_RS00600	CDS	ALIDE_RS00600	NC_014910.1	129515	129898	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cupin domain-containing protein	complement(129515..129898)	Alicycliphilus denitrificans BC	
ALIDE_RS00605	CDS	ALIDE_RS00605	NC_014910.1	129915	130880	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(129915..130880)	Alicycliphilus denitrificans BC	
ALIDE_RS00610	CDS	recQ	NC_014910.1	131138	133006	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA helicase RecQ	131138..133006	Alicycliphilus denitrificans BC	
ALIDE_RS00615	CDS	ALIDE_RS00615	NC_014910.1	133010	133690	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic ribonucleoside-triphosphate reductase activating protein	complement(133010..133690)	Alicycliphilus denitrificans BC	
ALIDE_RS00620	CDS	nrdD	NC_014910.1	133668	133868	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic ribonucleoside-triphosphate reductase	complement(133668..133868)	Alicycliphilus denitrificans BC	
ALIDE_RS00625	CDS	ALIDE_RS00625	NC_014910.1	133951	135981	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside triphosphate reductase	complement(133951..135981)	Alicycliphilus denitrificans BC	
ALIDE_RS00630	CDS	ALIDE_RS00630	NC_014910.1	136106	139408	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; EAL domain-containing protein	complement(136106..139408)	Alicycliphilus denitrificans BC	
ALIDE_RS00635	CDS	ALIDE_RS00635	NC_014910.1	139694	140122	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hemerythrin domain-containing protein	complement(139694..140122)	Alicycliphilus denitrificans BC	
ALIDE_RS00640	CDS	ALIDE_RS00640	NC_014910.1	140192	142501	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitric-oxide reductase large subunit	complement(140192..142501)	Alicycliphilus denitrificans BC	
ALIDE_RS00645	CDS	norR	NC_014910.1	142653	144266	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitric oxide reductase transcriptional regulator NorR	142653..144266	Alicycliphilus denitrificans BC	
ALIDE_RS00650	CDS	ALIDE_RS00650	NC_014910.1	144319	144981	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; heme-binding beta-barrel domain-containing protein	complement(144319..144981)	Alicycliphilus denitrificans BC	
ALIDE_RS00655	CDS	ALIDE_RS00655	NC_014910.1	145218	146606	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine ammonia-lyase	145218..146606	Alicycliphilus denitrificans BC	
ALIDE_RS00660	CDS	ALIDE_RS00660	NC_014910.1	146738	147688	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	146738..147688	Alicycliphilus denitrificans BC	
ALIDE_RS00665	CDS	ALIDE_RS00665	NC_014910.1	147699	149267	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I adenylate-forming enzyme family protein	147699..149267	Alicycliphilus denitrificans BC	
ALIDE_RS00670	CDS	ALIDE_RS00670	NC_014910.1	149285	150277	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	149285..150277	Alicycliphilus denitrificans BC	
ALIDE_RS00675	CDS	ALIDE_RS00675	NC_014910.1	150290	150745	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PaaI family thioesterase	150290..150745	Alicycliphilus denitrificans BC	
ALIDE_RS00680	CDS	ALIDE_RS00680	NC_014910.1	150767	151777	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(150767..151777)	Alicycliphilus denitrificans BC	
ALIDE_RS00685	CDS	ALIDE_RS00685	NC_014910.1	151817	152803	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(151817..152803)	Alicycliphilus denitrificans BC	
ALIDE_RS00690	CDS	ALIDE_RS00690	NC_014910.1	152836	153990	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(152836..153990)	Alicycliphilus denitrificans BC	
ALIDE_RS00695	CDS	ALIDE_RS00695	NC_014910.1	154066	155613	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(154066..155613)	Alicycliphilus denitrificans BC	
ALIDE_RS00700	CDS	ALIDE_RS00700	NC_014910.1	155819	156997	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiolase family protein	155819..156997	Alicycliphilus denitrificans BC	
ALIDE_RS00705	CDS	ALIDE_RS00705	NC_014910.1	157053	157820	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	157053..157820	Alicycliphilus denitrificans BC	
ALIDE_RS00710	CDS	ALIDE_RS00710	NC_014910.1	157889	158887	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	157889..158887	Alicycliphilus denitrificans BC	
ALIDE_RS00715	CDS	ALIDE_RS00715	NC_014910.1	158897	159703	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	158897..159703	Alicycliphilus denitrificans BC	
ALIDE_RS00720	CDS	ALIDE_RS00720	NC_014910.1	159841	160620	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	159841..160620	Alicycliphilus denitrificans BC	
ALIDE_RS00725	CDS	ALIDE_RS00725	NC_014910.1	160715	161824	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	160715..161824	Alicycliphilus denitrificans BC	
ALIDE_RS00730	CDS	ALIDE_RS00730	NC_014910.1	161850	162839	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(161850..162839)	Alicycliphilus denitrificans BC	
ALIDE_RS00735	CDS	ALIDE_RS00735	NC_014910.1	162883	163299	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Zn-ribbon domain-containing OB-fold protein	complement(162883..163299)	Alicycliphilus denitrificans BC	
ALIDE_RS00740	CDS	ALIDE_RS00740	NC_014910.1	163301	164461	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA acetyltransferase	complement(163301..164461)	Alicycliphilus denitrificans BC	
ALIDE_RS00745	CDS	ALIDE_RS00745	NC_014910.1	164484	165641	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(164484..165641)	Alicycliphilus denitrificans BC	
ALIDE_RS00750	CDS	ALIDE_RS00750	NC_014910.1	165676	167217	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(165676..167217)	Alicycliphilus denitrificans BC	
ALIDE_RS00755	CDS	ALIDE_RS00755	NC_014910.1	167204	168139	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC/PaaZ C-terminal domain-containing protein	complement(167204..168139)	Alicycliphilus denitrificans BC	
ALIDE_RS00760	CDS	ALIDE_RS00760	NC_014910.1	168157	169080	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	complement(168157..169080)	Alicycliphilus denitrificans BC	
ALIDE_RS00765	CDS	ALIDE_RS00765	NC_014910.1	169106	170089	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(169106..170089)	Alicycliphilus denitrificans BC	
ALIDE_RS00770	CDS	ALIDE_RS00770	NC_014910.1	170319	171104	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator C-terminal domain-containing protein	170319..171104	Alicycliphilus denitrificans BC	
ALIDE_RS00775	CDS	ALIDE_RS00775	NC_014910.1	171124	172311	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(171124..172311)	Alicycliphilus denitrificans BC	
ALIDE_RS00780	CDS	ALIDE_RS00780	NC_014910.1	172421	173284	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA ester lyase	complement(172421..173284)	Alicycliphilus denitrificans BC	
ALIDE_RS00785	CDS	ALIDE_RS00785	NC_014910.1	173317	173514	R	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein BugD	complement(173317..>173514)	Alicycliphilus denitrificans BC	
ALIDE_RS00790	CDS	ALIDE_RS00790	NC_014910.1	173667	174755	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS5-like element ISDisp1 family transposase	complement(173667..174755)	Alicycliphilus denitrificans BC	
ALIDE_RS00795	CDS	ALIDE_RS00795	NC_014910.1	174840	175637	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	complement(<174840..175637)	Alicycliphilus denitrificans BC	
ALIDE_RS00800	CDS	ALIDE_RS00800	NC_014910.1	175711	177096	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	complement(175711..177096)	Alicycliphilus denitrificans BC	
ALIDE_RS00805	CDS	ALIDE_RS00805	NC_014910.1	177147	178328	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	complement(177147..178328)	Alicycliphilus denitrificans BC	
ALIDE_RS00810	CDS	ALIDE_RS00810	NC_014910.1	178339	179505	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(178339..179505)	Alicycliphilus denitrificans BC	
ALIDE_RS00815	CDS	ALIDE_RS00815	NC_014910.1	179579	180472	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase N-terminal domain-containing protein	complement(179579..180472)	Alicycliphilus denitrificans BC	
ALIDE_RS00820	CDS	ALIDE_RS00820	NC_014910.1	180657	181574	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	180657..181574	Alicycliphilus denitrificans BC	
ALIDE_RS00825	CDS	ALIDE_RS00825	NC_014910.1	181578	182471	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC/PaaZ C-terminal domain-containing protein	181578..182471	Alicycliphilus denitrificans BC	
ALIDE_RS00830	CDS	ALIDE_RS00830	NC_014910.1	182553	183347	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase/isomerase family protein	182553..183347	Alicycliphilus denitrificans BC	
ALIDE_RS00835	CDS	ALIDE_RS00835	NC_014910.1	183484	184767	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA hydrolase/transferase C-terminal domain-containing protein	183484..184767	Alicycliphilus denitrificans BC	
ALIDE_RS00840	CDS	ALIDE_RS00840	NC_014910.1	184834	186042	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA C-acetyltransferase	184834..186042	Alicycliphilus denitrificans BC	
ALIDE_RS00845	CDS	ALIDE_RS00845	NC_014910.1	186057	186980	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(186057..186980)	Alicycliphilus denitrificans BC	
ALIDE_RS00850	CDS	ALIDE_RS00850	NC_014910.1	187158	188342	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	187158..188342	Alicycliphilus denitrificans BC	
ALIDE_RS00855	CDS	ALIDE_RS00855	NC_014910.1	188357	189382	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADPH:quinone oxidoreductase family protein	188357..189382	Alicycliphilus denitrificans BC	
ALIDE_RS00860	CDS	ALIDE_RS00860	NC_014910.1	189379	190404	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	189379..190404	Alicycliphilus denitrificans BC	
ALIDE_RS00865	CDS	ALIDE_RS00865	NC_014910.1	190435	191343	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(190435..191343)	Alicycliphilus denitrificans BC	
ALIDE_RS00870	CDS	ALIDE_RS00870	NC_014910.1	191452	192435	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	191452..192435	Alicycliphilus denitrificans BC	
ALIDE_RS00875	CDS	ALIDE_RS00875	NC_014910.1	192432	193631	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; M20 aminoacylase family protein	192432..193631	Alicycliphilus denitrificans BC	
ALIDE_RS00880	CDS	ALIDE_RS00880	NC_014910.1	193811	194791	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	193811..194791	Alicycliphilus denitrificans BC	
ALIDE_RS00885	CDS	ALIDE_RS00885	NC_014910.1	194793	196301	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I adenylate-forming enzyme family protein	194793..196301	Alicycliphilus denitrificans BC	
ALIDE_RS00890	CDS	ALIDE_RS00890	NC_014910.1	196319	197302	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	196319..197302	Alicycliphilus denitrificans BC	
ALIDE_RS00895	CDS	ALIDE_RS00895	NC_014910.1	197357	198358	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(197357..198358)	Alicycliphilus denitrificans BC	
ALIDE_RS00900	CDS	ALIDE_RS00900	NC_014910.1	198379	199560	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M20 aminoacylase family protein	complement(198379..199560)	Alicycliphilus denitrificans BC	
ALIDE_RS00905	CDS	ALIDE_RS00905	NC_014910.1	199861	200244	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; OB-fold domain-containing protein	199861..200244	Alicycliphilus denitrificans BC	
ALIDE_RS00910	CDS	ALIDE_RS00910	NC_014910.1	200241	201449	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiolase	200241..201449	Alicycliphilus denitrificans BC	
ALIDE_RS00915	CDS	ALIDE_RS00915	NC_014910.1	201469	202626	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	201469..202626	Alicycliphilus denitrificans BC	
ALIDE_RS00920	CDS	ALIDE_RS00920	NC_014910.1	202623	203054	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PaaI family thioesterase	202623..203054	Alicycliphilus denitrificans BC	
ALIDE_RS00925	CDS	ALIDE_RS00925	NC_014910.1	203051	203800	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	complement(203051..203800)	Alicycliphilus denitrificans BC	
ALIDE_RS00930	CDS	ALIDE_RS00930	NC_014910.1	203931	204917	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	203931..204917	Alicycliphilus denitrificans BC	
ALIDE_RS00935	CDS	ALIDE_RS00935	NC_014910.1	204914	205774	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	204914..205774	Alicycliphilus denitrificans BC	
ALIDE_RS00940	CDS	ALIDE_RS00940	NC_014910.1	205774	206922	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	205774..206922	Alicycliphilus denitrificans BC	
ALIDE_RS00945	CDS	ALIDE_RS00945	NC_014910.1	206972	208591	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxyl transferase domain-containing protein	206972..208591	Alicycliphilus denitrificans BC	
ALIDE_RS00950	CDS	ALIDE_RS00950	NC_014910.1	208602	209765	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	208602..209765	Alicycliphilus denitrificans BC	
ALIDE_RS00955	CDS	ALIDE_RS00955	NC_014910.1	209767	210588	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase-related protein	209767..210588	Alicycliphilus denitrificans BC	
ALIDE_RS00960	CDS	ALIDE_RS00960	NC_014910.1	210602	212596	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin carboxylase N-terminal domain-containing protein	210602..212596	Alicycliphilus denitrificans BC	
ALIDE_RS00965	CDS	ALIDE_RS00965	NC_014910.1	212593	214407	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyclic terpene utilization AtuA family protein	212593..214407	Alicycliphilus denitrificans BC	
ALIDE_RS00970	CDS	ALIDE_RS00970	NC_014910.1	214431	215411	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	214431..215411	Alicycliphilus denitrificans BC	
ALIDE_RS00975	CDS	ALIDE_RS00975	NC_014910.1	215419	216639	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	215419..216639	Alicycliphilus denitrificans BC	
ALIDE_RS00980	CDS	ALIDE_RS00980	NC_014910.1	216685	217602	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(216685..217602)	Alicycliphilus denitrificans BC	
ALIDE_RS00985	CDS	ALIDE_RS00985	NC_014910.1	217712	218989	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	217712..218989	Alicycliphilus denitrificans BC	
ALIDE_RS00990	CDS	ALIDE_RS00990	NC_014910.1	219041	219940	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(219041..219940)	Alicycliphilus denitrificans BC	
ALIDE_RS00995	CDS	ALIDE_RS00995	NC_014910.1	220078	221091	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	220078..221091	Alicycliphilus denitrificans BC	
ALIDE_RS01000	CDS	ALIDE_RS01000	NC_014910.1	221223	222413	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	221223..222413	Alicycliphilus denitrificans BC	
ALIDE_RS01005	CDS	ALIDE_RS01005	NC_014910.1	222438	223730	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Glu/Leu/Phe/Val dehydrogenase	complement(222438..223730)	Alicycliphilus denitrificans BC	
ALIDE_RS01010	CDS	ALIDE_RS01010	NC_014910.1	223917	224366	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PACE efflux transporter	223917..224366	Alicycliphilus denitrificans BC	
ALIDE_RS24655	CDS	ALIDE_RS24655	NC_014910.1	224789	225349	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SdiA-regulated domain-containing protein	224789..225349	Alicycliphilus denitrificans BC	
ALIDE_RS01025	CDS	metH	NC_014910.1	225477	228212	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine synthase	225477..228212	Alicycliphilus denitrificans BC	
ALIDE_RS01030	CDS	cas9	NC_014910.1	228371	231460	D	Cas9, originally named Csn1, is the large, multifunctional signature protein of type II CRISPR/Cas systems. It is well known even to general audiences because its RNA-guided endonuclease activity has made it a popular tool for custom editing of eukaryotic genomes.; Cas9, originally named Csn1, is the large, multifunctional signature protein of type II CRISPR/Cas systems. It is well known even to general audiences because its RNA-guided endonuclease activity has made it a popular tool for custom editing of eukaryotic genomes; Derived by automated computational analysis using gene prediction method: Protein Homology.; type II CRISPR RNA-guided endonuclease Cas9	228371..231460	Alicycliphilus denitrificans BC	
ALIDE_RS01035	CDS	cas1	NC_014910.1	231466	232395	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II CRISPR-associated endonuclease Cas1	231466..232395	Alicycliphilus denitrificans BC	
ALIDE_RS01040	CDS	cas2	NC_014910.1	232417	232743	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated endonuclease Cas2	232417..232743	Alicycliphilus denitrificans BC	
ALIDE_RS01045	CDS	ALIDE_RS01045	NC_014910.1	233453	233696	R	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2274 domain-containing protein	complement(233453..233696)	Alicycliphilus denitrificans BC	
ALIDE_RS01050	CDS	ALIDE_RS01050	NC_014910.1	233693	234955	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TrbI/VirB10 family protein	complement(233693..234955)	Alicycliphilus denitrificans BC	
ALIDE_RS01055	CDS	trbG	NC_014910.1	234957	235937	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer protein TrbG	complement(234957..235937)	Alicycliphilus denitrificans BC	
ALIDE_RS01060	CDS	trbF	NC_014910.1	235934	236638	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TrbF	complement(235934..236638)	Alicycliphilus denitrificans BC	
ALIDE_RS01065	CDS	trbL	NC_014910.1	236657	237991	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer protein TrbL	complement(236657..237991)	Alicycliphilus denitrificans BC	
ALIDE_RS01070	CDS	trbJ	NC_014910.1	238004	238729	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer protein TrbJ	complement(238004..238729)	Alicycliphilus denitrificans BC	
ALIDE_RS01075	CDS	trbE	NC_014910.1	238726	241161	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TrbE	complement(238726..241161)	Alicycliphilus denitrificans BC	
ALIDE_RS01080	CDS	ALIDE_RS01080	NC_014910.1	241171	241443	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; VirB3 family type IV secretion system protein	complement(241171..241443)	Alicycliphilus denitrificans BC	
ALIDE_RS01085	CDS	ALIDE_RS01085	NC_014910.1	241440	241817	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TrbC/VirB2 family protein	complement(241440..241817)	Alicycliphilus denitrificans BC	
ALIDE_RS01090	CDS	trbB	NC_014910.1	241814	242848	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer ATPase TrbB	complement(241814..242848)	Alicycliphilus denitrificans BC	
ALIDE_RS01095	CDS	ALIDE_RS01095	NC_014910.1	242845	243291	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CopG family transcriptional regulator	complement(242845..243291)	Alicycliphilus denitrificans BC	
ALIDE_RS01100	CDS	ALIDE_RS01100	NC_014910.1	243288	245288	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TraG	complement(243288..245288)	Alicycliphilus denitrificans BC	
ALIDE_RS01105	CDS	ALIDE_RS01105	NC_014910.1	245507	245779	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; EexN family lipoprotein	complement(245507..245779)	Alicycliphilus denitrificans BC	
ALIDE_RS01110	CDS	ALIDE_RS01110	NC_014910.1	245815	246708	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(245815..246708)	Alicycliphilus denitrificans BC	
ALIDE_RS01115	CDS	ALIDE_RS01115	NC_014910.1	246778	249966	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CusA/CzcA family heavy metal efflux RND transporter	complement(246778..249966)	Alicycliphilus denitrificans BC	
ALIDE_RS01120	CDS	ALIDE_RS01120	NC_014910.1	249983	251575	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	complement(249983..251575)	Alicycliphilus denitrificans BC	
ALIDE_RS01125	CDS	ALIDE_RS01125	NC_014910.1	251578	252903	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TolC family protein	complement(251578..252903)	Alicycliphilus denitrificans BC	
ALIDE_RS01130	CDS	ALIDE_RS01130	NC_014910.1	253070	253423	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(253070..253423)	Alicycliphilus denitrificans BC	
ALIDE_RS01135	CDS	ALIDE_RS01135	NC_014910.1	253630	253965	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4148 domain-containing protein	complement(253630..253965)	Alicycliphilus denitrificans BC	
ALIDE_RS01140	CDS	ALIDE_RS01140	NC_014910.1	254110	254796	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heavy metal response regulator transcription factor	254110..254796	Alicycliphilus denitrificans BC	
ALIDE_RS01145	CDS	ALIDE_RS01145	NC_014910.1	254925	256115	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heavy metal sensor histidine kinase	254925..256115	Alicycliphilus denitrificans BC	
ALIDE_RS01150	CDS	ALIDE_RS01150	NC_014910.1	256151	256843	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter	complement(256151..256843)	Alicycliphilus denitrificans BC	
ALIDE_RS23185	CDS	ALIDE_RS23185	NC_014910.1	256847	257137	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc ribbon domain-containing protein	complement(256847..257137)	Alicycliphilus denitrificans BC	
ALIDE_RS01155	CDS	ALIDE_RS01155	NC_014910.1	257160	259469	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; heavy metal translocating P-type ATPase	complement(257160..259469)	Alicycliphilus denitrificans BC	
ALIDE_RS01160	CDS	cadR	NC_014910.1	259708	260163	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Cd(II)/Pb(II)-responsive transcriptional regulator	259708..260163	Alicycliphilus denitrificans BC	
ALIDE_RS01165	CDS	ALIDE_RS01165	NC_014910.1	260164	262146	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; relaxase/mobilization nuclease and DUF3363 domain-containing protein	complement(260164..262146)	Alicycliphilus denitrificans BC	
ALIDE_RS01170	CDS	ALIDE_RS01170	NC_014910.1	262595	263194	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; S26 family signal peptidase	complement(262595..263194)	Alicycliphilus denitrificans BC	
ALIDE_RS01175	CDS	ALIDE_RS01175	NC_014910.1	263191	263736	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2840 domain-containing protein	complement(263191..263736)	Alicycliphilus denitrificans BC	
ALIDE_RS01180	CDS	ALIDE_RS01180	NC_014910.1	263733	264017	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(263733..264017)	Alicycliphilus denitrificans BC	
ALIDE_RS01185	CDS	parA	NC_014910.1	264014	264652	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParA family partition ATPase	complement(264014..264652)	Alicycliphilus denitrificans BC	
ALIDE_RS01190	CDS	ALIDE_RS01190	NC_014910.1	264906	265739	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; replication initiator protein A	complement(264906..265739)	Alicycliphilus denitrificans BC	
ALIDE_RS01195	CDS	ALIDE_RS01195	NC_014910.1	265766	266047	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	complement(265766..266047)	Alicycliphilus denitrificans BC	
ALIDE_RS01200	CDS	ALIDE_RS01200	NC_014910.1	266131	266904	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2285 domain-containing protein	complement(266131..266904)	Alicycliphilus denitrificans BC	
ALIDE_RS01205	CDS	ALIDE_RS01205	NC_014910.1	267233	267583	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2958 domain-containing protein	complement(267233..267583)	Alicycliphilus denitrificans BC	
ALIDE_RS01210	CDS	ALIDE_RS01210	NC_014910.1	267842	268135	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix transcriptional regulator	267842..268135	Alicycliphilus denitrificans BC	
ALIDE_RS01215	CDS	ALIDE_RS01215	NC_014910.1	268520	268834	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF736 domain-containing protein	complement(268520..268834)	Alicycliphilus denitrificans BC	
ALIDE_RS01220	CDS	ALIDE_RS01220	NC_014910.1	269722	270819	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoid-associated protein	269722..270819	Alicycliphilus denitrificans BC	
ALIDE_RS01225	CDS	ALIDE_RS01225	NC_014910.1	270816	271802	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RelA/SpoT domain-containing protein	270816..271802	Alicycliphilus denitrificans BC	
ALIDE_RS01230	CDS	ALIDE_RS01230	NC_014910.1	271936	272145	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(271936..272145)	Alicycliphilus denitrificans BC	
ALIDE_RS01235	CDS	ALIDE_RS01235	NC_014910.1	272208	274262	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParB/RepB/Spo0J family partition protein	complement(272208..274262)	Alicycliphilus denitrificans BC	
ALIDE_RS01240	CDS	ALIDE_RS01240	NC_014910.1	274328	275155	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF932 domain-containing protein	complement(274328..275155)	Alicycliphilus denitrificans BC	
ALIDE_RS01245	CDS	ALIDE_RS01245	NC_014910.1	276176	276409	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	276176..276409	Alicycliphilus denitrificans BC	
ALIDE_RS23215	CDS	ALIDE_RS23215	NC_014910.1	276459	276767	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix transcriptional regulator	276459..276767	Alicycliphilus denitrificans BC	
ALIDE_RS23220	CDS	ALIDE_RS23220	NC_014910.1	276730	277758	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; reverse transcriptase family protein	276730..277758	Alicycliphilus denitrificans BC	
ALIDE_RS01255	CDS	ALIDE_RS01255	NC_014910.1	277930	278247	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; addiction module antidote protein	complement(277930..278247)	Alicycliphilus denitrificans BC	
ALIDE_RS01260	CDS	ALIDE_RS01260	NC_014910.1	278244	278573	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system RelE/ParE family toxin	complement(278244..278573)	Alicycliphilus denitrificans BC	
ALIDE_RS01265	CDS	ALIDE_RS01265	NC_014910.1	278679	280043	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific integrase	complement(278679..280043)	Alicycliphilus denitrificans BC	
ALIDE_RS01270	CDS	ALIDE_RS01270	NC_014910.1	284052	284594	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate kinase	complement(284052..284594)	Alicycliphilus denitrificans BC	
ALIDE_RS01275	CDS	ALIDE_RS01275	NC_014910.1	284700	285599	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YihY/virulence factor BrkB family protein	284700..285599	Alicycliphilus denitrificans BC	
ALIDE_RS01280	CDS	ALIDE_RS01280	NC_014910.1	285725	286441	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine zipper 2TM domain-containing protein	285725..286441	Alicycliphilus denitrificans BC	
ALIDE_RS01285	CDS	ALIDE_RS01285	NC_014910.1	286498	287271	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin--NADP reductase	complement(286498..287271)	Alicycliphilus denitrificans BC	
ALIDE_RS01290	CDS	ALIDE_RS01290	NC_014910.1	287464	288660	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	287464..288660	Alicycliphilus denitrificans BC	
ALIDE_RS01295	CDS	ALIDE_RS01295	NC_014910.1	288677	290575	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	288677..290575	Alicycliphilus denitrificans BC	
ALIDE_RS01300	CDS	ALIDE_RS01300	NC_014910.1	290572	292110	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding cassette domain-containing protein	290572..292110	Alicycliphilus denitrificans BC	
ALIDE_RS01305	CDS	ALIDE_RS01305	NC_014910.1	292258	295158	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; C1 family peptidase	292258..295158	Alicycliphilus denitrificans BC	
ALIDE_RS24925	CDS	ALIDE_RS24925	NC_014910.1	295191	296252	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor plug domain-containing protein	complement(295191..296252)	Alicycliphilus denitrificans BC	
ALIDE_RS24930	CDS	ALIDE_RS24930	NC_014910.1	296396	296515	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4880 domain-containing protein	complement(<296396..296515)	Alicycliphilus denitrificans BC	
ALIDE_RS01320	CDS	ALIDE_RS01320	NC_014910.1	296512	296895	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-70 family RNA polymerase sigma factor	complement(296512..296895)	Alicycliphilus denitrificans BC	
ALIDE_RS24885	CDS	ALIDE_RS24885	NC_014910.1	296921	297043	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(296921..297043)	Alicycliphilus denitrificans BC	
ALIDE_RS01325	CDS	ALIDE_RS01325	NC_014910.1	297101	298636	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YifB family Mg chelatase-like AAA ATPase	complement(297101..298636)	Alicycliphilus denitrificans BC	
ALIDE_RS01330	CDS	ALIDE_RS01330	NC_014910.1	298775	299506	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TorF family putative porin	298775..299506	Alicycliphilus denitrificans BC	
ALIDE_RS01335	CDS	glnK	NC_014910.1	299526	299864	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-II family nitrogen regulator	299526..299864	Alicycliphilus denitrificans BC	
ALIDE_RS01340	CDS	amt	NC_014910.1	299887	301275	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ammonium transporter	299887..301275	Alicycliphilus denitrificans BC	
ALIDE_RS01345	CDS	ALIDE_RS01345	NC_014910.1	301369	302247	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	301369..302247	Alicycliphilus denitrificans BC	
ALIDE_RS01350	CDS	ALIDE_RS01350	NC_014910.1	302321	303196	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)-dependent oxidoreductase	complement(302321..303196)	Alicycliphilus denitrificans BC	
ALIDE_RS01355	CDS	ALIDE_RS01355	NC_014910.1	303193	304623	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent succinate-semialdehyde dehydrogenase	complement(303193..304623)	Alicycliphilus denitrificans BC	
ALIDE_RS01360	CDS	ALIDE_RS01360	NC_014910.1	304623	305603	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(304623..305603)	Alicycliphilus denitrificans BC	
ALIDE_RS01365	CDS	ALIDE_RS01365	NC_014910.1	305633	306412	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acyl homoserine lactonase family protein	complement(305633..306412)	Alicycliphilus denitrificans BC	
ALIDE_RS01370	CDS	ALIDE_RS01370	NC_014910.1	306409	307635	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(306409..307635)	Alicycliphilus denitrificans BC	
ALIDE_RS01375	CDS	ALIDE_RS01375	NC_014910.1	307797	308687	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)-dependent oxidoreductase	complement(307797..308687)	Alicycliphilus denitrificans BC	
ALIDE_RS01380	CDS	ALIDE_RS01380	NC_014910.1	308684	309544	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	complement(308684..309544)	Alicycliphilus denitrificans BC	
ALIDE_RS01385	CDS	ALIDE_RS01385	NC_014910.1	309534	309884	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(309534..309884)	Alicycliphilus denitrificans BC	
ALIDE_RS01390	CDS	ALIDE_RS01390	NC_014910.1	309967	311034	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AbrB family transcriptional regulator	complement(309967..311034)	Alicycliphilus denitrificans BC	
ALIDE_RS01395	CDS	ALIDE_RS01395	NC_014910.1	311037	312383	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	complement(311037..312383)	Alicycliphilus denitrificans BC	
ALIDE_RS01400	CDS	ALIDE_RS01400	NC_014910.1	312538	313692	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase	312538..313692	Alicycliphilus denitrificans BC	
ALIDE_RS01405	CDS	ALIDE_RS01405	NC_014910.1	313716	314690	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	313716..314690	Alicycliphilus denitrificans BC	
ALIDE_RS01410	CDS	ALIDE_RS01410	NC_014910.1	314687	316762	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate--CoA ligase family protein	314687..316762	Alicycliphilus denitrificans BC	
ALIDE_RS01415	CDS	glcE	NC_014910.1	316836	317948	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycolate oxidase subunit GlcE	316836..317948	Alicycliphilus denitrificans BC	
ALIDE_RS01420	CDS	ALIDE_RS01420	NC_014910.1	317951	318724	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YoaK family protein	317951..318724	Alicycliphilus denitrificans BC	
ALIDE_RS01425	CDS	glcF	NC_014910.1	318761	319999	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycolate oxidase subunit GlcF	318761..319999	Alicycliphilus denitrificans BC	
ALIDE_RS01430	CDS	ALIDE_RS01430	NC_014910.1	320062	320793	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ProQ/FINO family protein	320062..320793	Alicycliphilus denitrificans BC	
ALIDE_RS01435	CDS	ALIDE_RS01435	NC_014910.1	320851	321735	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	complement(320851..321735)	Alicycliphilus denitrificans BC	
ALIDE_RS01440	CDS	lplT	NC_014910.1	321789	323066	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipid transporter LplT	complement(321789..323066)	Alicycliphilus denitrificans BC	
ALIDE_RS01445	CDS	alr	NC_014910.1	323210	324304	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine racemase	323210..324304	Alicycliphilus denitrificans BC	
ALIDE_RS01450	CDS	ALIDE_RS01450	NC_014910.1	324523	325542	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome-c peroxidase	324523..325542	Alicycliphilus denitrificans BC	
ALIDE_RS01455	CDS	ALIDE_RS01455	NC_014910.1	325622	326236	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase family protein	complement(325622..326236)	Alicycliphilus denitrificans BC	
ALIDE_RS01460	CDS	radA	NC_014910.1	326367	327749	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RadA	326367..327749	Alicycliphilus denitrificans BC	
ALIDE_RS01465	CDS	ALIDE_RS01465	NC_014910.1	327753	328739	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(327753..328739)	Alicycliphilus denitrificans BC	
ALIDE_RS01470	CDS	ALIDE_RS01470	NC_014910.1	328764	330188	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidase family protein	complement(328764..330188)	Alicycliphilus denitrificans BC	
ALIDE_RS01475	CDS	ALIDE_RS01475	NC_014910.1	330354	330770	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	330354..330770	Alicycliphilus denitrificans BC	
ALIDE_RS01480	CDS	ALIDE_RS01480	NC_014910.1	330815	331753	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transaminase	330815..331753	Alicycliphilus denitrificans BC	
ALIDE_RS01485	CDS	ALIDE_RS01485	NC_014910.1	331761	331967	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-finger domain-containing protein	331761..331967	Alicycliphilus denitrificans BC	
ALIDE_RS01490	CDS	ALIDE_RS01490	NC_014910.1	332042	333394	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; O-antigen ligase family protein	332042..333394	Alicycliphilus denitrificans BC	
ALIDE_RS01495	CDS	ALIDE_RS01495	NC_014910.1	333387	334502	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase	333387..334502	Alicycliphilus denitrificans BC	
ALIDE_RS01500	CDS	ALIDE_RS01500	NC_014910.1	334499	335545	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 2 protein	334499..335545	Alicycliphilus denitrificans BC	
ALIDE_RS01505	CDS	ALIDE_RS01505	NC_014910.1	335542	336516	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; capsular polysaccharide synthesis protein	335542..336516	Alicycliphilus denitrificans BC	
ALIDE_RS01510	CDS	ALIDE_RS01510	NC_014910.1	336585	337649	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitronate monooxygenase	complement(336585..337649)	Alicycliphilus denitrificans BC	
ALIDE_RS01515	CDS	ALIDE_RS01515	NC_014910.1	337646	338512	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(337646..338512)	Alicycliphilus denitrificans BC	
ALIDE_RS01520	CDS	ALIDE_RS01520	NC_014910.1	338568	339797	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YbfB/YjiJ family MFS transporter	338568..339797	Alicycliphilus denitrificans BC	
ALIDE_RS01525	CDS	ALIDE_RS01525	NC_014910.1	339801	340520	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MOSC domain-containing protein	complement(339801..340520)	Alicycliphilus denitrificans BC	
ALIDE_RS01530	CDS	ALIDE_RS01530	NC_014910.1	340517	341077	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; redoxin domain-containing protein	complement(340517..341077)	Alicycliphilus denitrificans BC	
ALIDE_RS01535	CDS	ALIDE_RS01535	NC_014910.1	341096	341590	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SRPBCC family protein	complement(341096..341590)	Alicycliphilus denitrificans BC	
ALIDE_RS01540	CDS	ALIDE_RS01540	NC_014910.1	341690	342151	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase	complement(341690..342151)	Alicycliphilus denitrificans BC	
ALIDE_RS01545	CDS	ALIDE_RS01545	NC_014910.1	342173	343144	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(342173..343144)	Alicycliphilus denitrificans BC	
ALIDE_RS01550	CDS	ALIDE_RS01550	NC_014910.1	343298	344227	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	343298..344227	Alicycliphilus denitrificans BC	
ALIDE_RS01555	CDS	ALIDE_RS01555	NC_014910.1	344352	345518	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	344352..345518	Alicycliphilus denitrificans BC	
ALIDE_RS01560	CDS	ALIDE_RS01560	NC_014910.1	345536	346747	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	complement(345536..346747)	Alicycliphilus denitrificans BC	
ALIDE_RS01565	CDS	ALIDE_RS01565	NC_014910.1	346757	347467	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	complement(346757..347467)	Alicycliphilus denitrificans BC	
ALIDE_RS01570	CDS	ALIDE_RS01570	NC_014910.1	347563	348894	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(347563..348894)	Alicycliphilus denitrificans BC	
ALIDE_RS01575	CDS	ALIDE_RS01575	NC_014910.1	348931	349596	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator	348931..349596	Alicycliphilus denitrificans BC	
ALIDE_RS01580	CDS	ALIDE_RS01580	NC_014910.1	349710	350603	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; EamA family transporter	349710..350603	Alicycliphilus denitrificans BC	
ALIDE_RS01585	CDS	ALIDE_RS01585	NC_014910.1	350600	351454	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; M48 family metallopeptidase	350600..351454	Alicycliphilus denitrificans BC	
ALIDE_RS01590	CDS	ALIDE_RS01590	NC_014910.1	351482	351727	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY-associated TM helix domain-containing protein	complement(351482..351727)	Alicycliphilus denitrificans BC	
ALIDE_RS01595	CDS	ALIDE_RS01595	NC_014910.1	351717	351941	D	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix transcriptional regulator	<351717..351941	Alicycliphilus denitrificans BC	
ALIDE_RS01600	CDS	ALIDE_RS01600	NC_014910.1	352011	352766	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	complement(352011..352766)	Alicycliphilus denitrificans BC	
ALIDE_RS01605	CDS	ALIDE_RS01605	NC_014910.1	352768	354474	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54-dependent Fis family transcriptional regulator	complement(352768..354474)	Alicycliphilus denitrificans BC	
ALIDE_RS01610	CDS	ALIDE_RS01610	NC_014910.1	354706	355017	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phenol hydroxylase subunit	354706..355017	Alicycliphilus denitrificans BC	
ALIDE_RS01615	CDS	ALIDE_RS01615	NC_014910.1	355061	356053	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic/alkene monooxygenase hydroxylase subunit beta	355061..356053	Alicycliphilus denitrificans BC	
ALIDE_RS01620	CDS	ALIDE_RS01620	NC_014910.1	356076	356345	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmoB/DmpM family protein	356076..356345	Alicycliphilus denitrificans BC	
ALIDE_RS01625	CDS	ALIDE_RS01625	NC_014910.1	356371	357918	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alpha	356371..357918	Alicycliphilus denitrificans BC	
ALIDE_RS01630	CDS	ALIDE_RS01630	NC_014910.1	357985	358341	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phenol hydroxylase subunit P4	357985..358341	Alicycliphilus denitrificans BC	
ALIDE_RS01635	CDS	ALIDE_RS01635	NC_014910.1	358412	359482	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phenol 2-monooxygenase domain-containing protein	358412..359482	Alicycliphilus denitrificans BC	
ALIDE_RS01640	CDS	ALIDE_RS01640	NC_014910.1	359496	359837	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2Fe-2S iron-sulfur cluster binding domain-containing protein	359496..359837	Alicycliphilus denitrificans BC	
ALIDE_RS01645	CDS	ALIDE_RS01645	NC_014910.1	359860	360786	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; catechol 2,3-dioxygenase	359860..360786	Alicycliphilus denitrificans BC	
ALIDE_RS01650	CDS	ALIDE_RS01650	NC_014910.1	360786	361217	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heme-binding protein	360786..361217	Alicycliphilus denitrificans BC	
ALIDE_RS01655	CDS	ALIDE_RS01655	NC_014910.1	361368	362457	R	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS5-like element ISDisp1 family transposase	complement(361368..362457)	Alicycliphilus denitrificans BC	
ALIDE_RS01660	CDS	ALIDE_RS01660	NC_014910.1	362556	363461	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter	362556..363461	Alicycliphilus denitrificans BC	
ALIDE_RS01665	CDS	ALIDE_RS01665	NC_014910.1	364232	365692	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-hydroxymuconic semialdehyde dehydrogenase	364232..365692	Alicycliphilus denitrificans BC	
ALIDE_RS01670	CDS	ALIDE_RS01670	NC_014910.1	365754	366617	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	365754..366617	Alicycliphilus denitrificans BC	
ALIDE_RS01675	CDS	dmpE	NC_014910.1	366622	367404	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxopent-4-enoate hydratase	366622..367404	Alicycliphilus denitrificans BC	
ALIDE_RS01680	CDS	ALIDE_RS01680	NC_014910.1	367423	368337	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde dehydrogenase (acetylating)	367423..368337	Alicycliphilus denitrificans BC	
ALIDE_RS01685	CDS	aphG	NC_014910.1	368352	369389	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-2-oxovalerate aldolase AphG	368352..369389	Alicycliphilus denitrificans BC	
ALIDE_RS01690	CDS	dmpH	NC_014910.1	369423	370211	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxo-3-hexenedioate decarboxylase	369423..370211	Alicycliphilus denitrificans BC	
ALIDE_RS01695	CDS	ALIDE_RS01695	NC_014910.1	370252	371220	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	370252..371220	Alicycliphilus denitrificans BC	
ALIDE_RS01700	CDS	ALIDE_RS01700	NC_014910.1	371247	371438	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-hydroxymuconate tautomerase	371247..371438	Alicycliphilus denitrificans BC	
ALIDE_RS01705	CDS	ALIDE_RS01705	NC_014910.1	371503	372141	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MBL fold metallo-hydrolase	complement(371503..372141)	Alicycliphilus denitrificans BC	
ALIDE_RS01710	CDS	ALIDE_RS01710	NC_014910.1	372207	372959	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	complement(372207..372959)	Alicycliphilus denitrificans BC	
ALIDE_RS01715	CDS	ALIDE_RS01715	NC_014910.1	373084	374064	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	373084..374064	Alicycliphilus denitrificans BC	
ALIDE_RS01720	CDS	ALIDE_RS01720	NC_014910.1	374072	374944	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidohydrolase family protein	374072..374944	Alicycliphilus denitrificans BC	
ALIDE_RS01725	CDS	ALIDE_RS01725	NC_014910.1	374967	375956	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	374967..375956	Alicycliphilus denitrificans BC	
ALIDE_RS01730	CDS	ALIDE_RS01730	NC_014910.1	375989	376675	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase	375989..376675	Alicycliphilus denitrificans BC	
ALIDE_RS01735	CDS	ALIDE_RS01735	NC_014910.1	376672	377589	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)-dependent oxidoreductase	376672..377589	Alicycliphilus denitrificans BC	
ALIDE_RS01740	CDS	ALIDE_RS01740	NC_014910.1	377614	378603	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	377614..378603	Alicycliphilus denitrificans BC	
ALIDE_RS01745	CDS	ALIDE_RS01745	NC_014910.1	378950	379906	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	378950..379906	Alicycliphilus denitrificans BC	
ALIDE_RS01750	CDS	ALIDE_RS01750	NC_014910.1	379912	380787	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidohydrolase family protein	379912..380787	Alicycliphilus denitrificans BC	
ALIDE_RS01755	CDS	ALIDE_RS01755	NC_014910.1	380800	381717	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SMP-30/gluconolactonase/LRE family protein	380800..381717	Alicycliphilus denitrificans BC	
ALIDE_RS01760	CDS	ALIDE_RS01760	NC_014910.1	381729	382712	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(381729..382712)	Alicycliphilus denitrificans BC	
ALIDE_RS01765	CDS	ALIDE_RS01765	NC_014910.1	382731	383624	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)-dependent oxidoreductase	complement(382731..383624)	Alicycliphilus denitrificans BC	
ALIDE_RS01770	CDS	ALIDE_RS01770	NC_014910.1	383647	385098	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase	complement(383647..385098)	Alicycliphilus denitrificans BC	
ALIDE_RS01775	CDS	ALIDE_RS01775	NC_014910.1	385293	386021	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	complement(385293..386021)	Alicycliphilus denitrificans BC	
ALIDE_RS01780	CDS	ALIDE_RS01780	NC_014910.1	386294	386698	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	386294..386698	Alicycliphilus denitrificans BC	
ALIDE_RS01785	CDS	ALIDE_RS01785	NC_014910.1	386719	387567	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	386719..387567	Alicycliphilus denitrificans BC	
ALIDE_RS01790	CDS	ALIDE_RS01790	NC_014910.1	387622	388776	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	387622..388776	Alicycliphilus denitrificans BC	
ALIDE_RS01795	CDS	ALIDE_RS01795	NC_014910.1	388798	389667	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	388798..389667	Alicycliphilus denitrificans BC	
ALIDE_RS01800	CDS	ALIDE_RS01800	NC_014910.1	389699	390670	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	389699..390670	Alicycliphilus denitrificans BC	
ALIDE_RS01805	CDS	ALIDE_RS01805	NC_014910.1	390667	391446	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	390667..391446	Alicycliphilus denitrificans BC	
ALIDE_RS01810	CDS	ALIDE_RS01810	NC_014910.1	391433	392146	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	391433..392146	Alicycliphilus denitrificans BC	
ALIDE_RS01815	CDS	ALIDE_RS01815	NC_014910.1	392149	393171	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidohydrolase family protein	392149..393171	Alicycliphilus denitrificans BC	
ALIDE_RS01820	CDS	ALIDE_RS01820	NC_014910.1	393156	393887	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	complement(393156..393887)	Alicycliphilus denitrificans BC	
ALIDE_RS01825	CDS	ALIDE_RS01825	NC_014910.1	393971	395173	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	393971..395173	Alicycliphilus denitrificans BC	
ALIDE_RS01830	CDS	ALIDE_RS01830	NC_014910.1	395170	395943	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	395170..395943	Alicycliphilus denitrificans BC	
ALIDE_RS01835	CDS	ALIDE_RS01835	NC_014910.1	395940	396980	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransferase	395940..396980	Alicycliphilus denitrificans BC	
ALIDE_RS01840	CDS	ALIDE_RS01840	NC_014910.1	397078	397878	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease III	complement(397078..397878)	Alicycliphilus denitrificans BC	
ALIDE_RS01845	CDS	pyrE	NC_014910.1	397889	398587	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; orotate phosphoribosyltransferase	397889..398587	Alicycliphilus denitrificans BC	
ALIDE_RS01850	CDS	ALIDE_RS01850	NC_014910.1	398608	399312	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	398608..399312	Alicycliphilus denitrificans BC	
ALIDE_RS01855	CDS	gatB	NC_014910.1	399381	400826	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	complement(399381..400826)	Alicycliphilus denitrificans BC	
ALIDE_RS01860	CDS	gatA	NC_014910.1	400829	402319	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	complement(400829..402319)	Alicycliphilus denitrificans BC	
ALIDE_RS01865	CDS	gatC	NC_014910.1	402316	402615	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	complement(402316..402615)	Alicycliphilus denitrificans BC	
ALIDE_RS01870	CDS	ALIDE_RS01870	NC_014910.1	402821	403864	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein	402821..403864	Alicycliphilus denitrificans BC	
ALIDE_RS01875	CDS	mreC	NC_014910.1	403894	404811	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein MreC	403894..404811	Alicycliphilus denitrificans BC	
ALIDE_RS01880	CDS	mreD	NC_014910.1	404808	405329	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein MreD	404808..405329	Alicycliphilus denitrificans BC	
ALIDE_RS01885	CDS	mrdA	NC_014910.1	405346	407289	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 2	405346..407289	Alicycliphilus denitrificans BC	
ALIDE_RS01890	CDS	rocF	NC_014910.1	407305	408216	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; arginase	complement(407305..408216)	Alicycliphilus denitrificans BC	
ALIDE_RS01895	CDS	ALIDE_RS01895	NC_014910.1	408230	408988	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TSUP family transporter	complement(408230..408988)	Alicycliphilus denitrificans BC	
ALIDE_RS01900	CDS	ALIDE_RS01900	NC_014910.1	409235	410917	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GMC family oxidoreductase N-terminal domain-containing protein	complement(409235..410917)	Alicycliphilus denitrificans BC	
ALIDE_RS01905	CDS	ALIDE_RS01905	NC_014910.1	411184	412302	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	411184..412302	Alicycliphilus denitrificans BC	
ALIDE_RS01910	CDS	ALIDE_RS01910	NC_014910.1	412305	413108	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding cassette domain-containing protein	412305..413108	Alicycliphilus denitrificans BC	
ALIDE_RS01915	CDS	ALIDE_RS01915	NC_014910.1	413108	414085	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MlaD family protein	413108..414085	Alicycliphilus denitrificans BC	
ALIDE_RS01920	CDS	ALIDE_RS01920	NC_014910.1	414096	414776	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC-type transport auxiliary lipoprotein family protein	414096..414776	Alicycliphilus denitrificans BC	
ALIDE_RS01925	CDS	ALIDE_RS01925	NC_014910.1	415230	416159	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	415230..416159	Alicycliphilus denitrificans BC	
ALIDE_RS01930	CDS	ALIDE_RS01930	NC_014910.1	416240	418249	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aconitase family protein	416240..418249	Alicycliphilus denitrificans BC	
ALIDE_RS01935	CDS	ALIDE_RS01935	NC_014910.1	418287	419276	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	418287..419276	Alicycliphilus denitrificans BC	
ALIDE_RS01940	CDS	ALIDE_RS01940	NC_014910.1	419285	419818	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; regulator of ribonuclease activity a	419285..419818	Alicycliphilus denitrificans BC	
ALIDE_RS01945	CDS	ALIDE_RS01945	NC_014910.1	419769	420404	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MarC family protein	complement(419769..420404)	Alicycliphilus denitrificans BC	
ALIDE_RS01950	CDS	ALIDE_RS01950	NC_014910.1	420518	421207	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dienelactone hydrolase family protein	420518..421207	Alicycliphilus denitrificans BC	
ALIDE_RS01955	CDS	ALIDE_RS01955	NC_014910.1	421271	422839	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DHA2 family efflux MFS transporter permease subunit	complement(421271..422839)	Alicycliphilus denitrificans BC	
ALIDE_RS01960	CDS	ALIDE_RS01960	NC_014910.1	422842	424041	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	complement(422842..424041)	Alicycliphilus denitrificans BC	
ALIDE_RS01965	CDS	ALIDE_RS01965	NC_014910.1	424076	425497	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux transporter outer membrane subunit	complement(424076..425497)	Alicycliphilus denitrificans BC	
ALIDE_RS01970	CDS	ALIDE_RS01970	NC_014910.1	425527	426039	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MarR family transcriptional regulator	complement(425527..426039)	Alicycliphilus denitrificans BC	
ALIDE_RS01975	CDS	ALIDE_RS01975	NC_014910.1	426111	427286	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium transporter CorA family protein	complement(426111..427286)	Alicycliphilus denitrificans BC	
ALIDE_RS01980	CDS	hemB	NC_014910.1	427326	428333	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; porphobilinogen synthase	complement(427326..428333)	Alicycliphilus denitrificans BC	
ALIDE_RS01985	CDS	ALIDE_RS01985	NC_014910.1	428387	429109	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ligase	428387..429109	Alicycliphilus denitrificans BC	
ALIDE_RS01990	CDS	ALIDE_RS01990	NC_014910.1	429257	429685	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CopD family protein	429257..429685	Alicycliphilus denitrificans BC	
ALIDE_RS01995	CDS	ALIDE_RS01995	NC_014910.1	429711	430808	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VanZ family protein	429711..430808	Alicycliphilus denitrificans BC	
ALIDE_RS02000	CDS	ALIDE_RS02000	NC_014910.1	430818	431159	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin	430818..431159	Alicycliphilus denitrificans BC	
ALIDE_RS02005	CDS	ALIDE_RS02005	NC_014910.1	431243	431878	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta fold hydrolase	431243..431878	Alicycliphilus denitrificans BC	
ALIDE_RS02010	CDS	ALIDE_RS02010	NC_014910.1	431980	433143	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase family protein	431980..433143	Alicycliphilus denitrificans BC	
ALIDE_RS02015	CDS	rpsL	NC_014910.1	433245	433622	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S12	433245..433622	Alicycliphilus denitrificans BC	
ALIDE_RS02020	CDS	rpsG	NC_014910.1	433786	434259	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S7	433786..434259	Alicycliphilus denitrificans BC	
ALIDE_RS02025	CDS	fusA	NC_014910.1	434346	436454	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor G	434346..436454	Alicycliphilus denitrificans BC	
ALIDE_RS02030	CDS	tuf	NC_014910.1	436688	437878	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor Tu	436688..437878	Alicycliphilus denitrificans BC	
ALIDE_RS02035	CDS	rpsJ	NC_014910.1	437906	438217	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S10	437906..438217	Alicycliphilus denitrificans BC	
ALIDE_RS02040	CDS	rplC	NC_014910.1	438434	439108	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L3	438434..439108	Alicycliphilus denitrificans BC	
ALIDE_RS02045	CDS	rplD	NC_014910.1	439108	439728	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L4	439108..439728	Alicycliphilus denitrificans BC	
ALIDE_RS02050	CDS	rplW	NC_014910.1	439725	440039	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L23	439725..440039	Alicycliphilus denitrificans BC	
ALIDE_RS02055	CDS	rplB	NC_014910.1	440042	440866	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L2	440042..440866	Alicycliphilus denitrificans BC	
ALIDE_RS02060	CDS	rpsS	NC_014910.1	440877	441152	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S19	440877..441152	Alicycliphilus denitrificans BC	
ALIDE_RS02065	CDS	rplV	NC_014910.1	441162	441494	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L22	441162..441494	Alicycliphilus denitrificans BC	
ALIDE_RS02070	CDS	rpsC	NC_014910.1	441512	442384	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S3	441512..442384	Alicycliphilus denitrificans BC	
ALIDE_RS02075	CDS	rplP	NC_014910.1	442387	442803	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L16	442387..442803	Alicycliphilus denitrificans BC	
ALIDE_RS02080	CDS	rpmC	NC_014910.1	442815	443012	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L29	442815..443012	Alicycliphilus denitrificans BC	
ALIDE_RS02085	CDS	rpsQ	NC_014910.1	443026	443295	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S17	443026..443295	Alicycliphilus denitrificans BC	
ALIDE_RS02090	CDS	ALIDE_RS02090	NC_014910.1	443375	443881	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxiredoxin	443375..443881	Alicycliphilus denitrificans BC	
ALIDE_RS02095	CDS	ALIDE_RS02095	NC_014910.1	443987	444481	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	complement(443987..444481)	Alicycliphilus denitrificans BC	
ALIDE_RS02100	CDS	ALIDE_RS02100	NC_014910.1	444550	445278	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome b/b6 domain-containing protein	complement(444550..445278)	Alicycliphilus denitrificans BC	
ALIDE_RS02105	CDS	ALIDE_RS02105	NC_014910.1	445527	446030	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TlpA disulfide reductase family protein	complement(445527..446030)	Alicycliphilus denitrificans BC	
ALIDE_RS02110	CDS	ALIDE_RS02110	NC_014910.1	446103	446753	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	446103..446753	Alicycliphilus denitrificans BC	
ALIDE_RS02115	CDS	ALIDE_RS02115	NC_014910.1	446775	447264	D	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA	446775..447264	Alicycliphilus denitrificans BC	
ALIDE_RS02120	CDS	ALIDE_RS02120	NC_014910.1	447182	447451	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HPr family phosphocarrier protein	447182..447451	Alicycliphilus denitrificans BC	
ALIDE_RS02125	CDS	ptsP	NC_014910.1	447470	449236	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate--protein phosphotransferase	447470..449236	Alicycliphilus denitrificans BC	
ALIDE_RS02130	CDS	lipA	NC_014910.1	449303	450283	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoyl synthase	complement(449303..450283)	Alicycliphilus denitrificans BC	
ALIDE_RS02135	CDS	lipB	NC_014910.1	450301	450993	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoyl(octanoyl) transferase LipB	complement(450301..450993)	Alicycliphilus denitrificans BC	
ALIDE_RS02140	CDS	ALIDE_RS02140	NC_014910.1	451005	451301	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF493 family protein	complement(451005..451301)	Alicycliphilus denitrificans BC	
ALIDE_RS02145	CDS	ALIDE_RS02145	NC_014910.1	451489	451977	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP synthase subunit I	451489..451977	Alicycliphilus denitrificans BC	
ALIDE_RS02150	CDS	atpB	NC_014910.1	452000	452863	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit A	452000..452863	Alicycliphilus denitrificans BC	
ALIDE_RS02155	CDS	atpE	NC_014910.1	452915	453163	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit C	452915..453163	Alicycliphilus denitrificans BC	
ALIDE_RS02160	CDS	ALIDE_RS02160	NC_014910.1	453202	453672	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit B	453202..453672	Alicycliphilus denitrificans BC	
ALIDE_RS02165	CDS	ALIDE_RS02165	NC_014910.1	453691	454233	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit delta	453691..454233	Alicycliphilus denitrificans BC	
ALIDE_RS02170	CDS	atpA	NC_014910.1	454279	455838	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit alpha	454279..455838	Alicycliphilus denitrificans BC	
ALIDE_RS02175	CDS	atpG	NC_014910.1	455857	456723	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit gamma	455857..456723	Alicycliphilus denitrificans BC	
ALIDE_RS02180	CDS	atpD	NC_014910.1	456752	458161	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit beta	456752..458161	Alicycliphilus denitrificans BC	
ALIDE_RS02185	CDS	ALIDE_RS02185	NC_014910.1	458236	458652	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit epsilon	458236..458652	Alicycliphilus denitrificans BC	
ALIDE_RS02190	CDS	ALIDE_RS02190	NC_014910.1	458735	459226	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-binding protein	complement(458735..459226)	Alicycliphilus denitrificans BC	
ALIDE_RS24660	CDS	ALIDE_RS24660	NC_014910.1	459223	459369	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(459223..459369)	Alicycliphilus denitrificans BC	
ALIDE_RS02195	CDS	ALIDE_RS02195	NC_014910.1	459369	460109	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	complement(459369..460109)	Alicycliphilus denitrificans BC	
ALIDE_RS24665	CDS	ALIDE_RS24665	NC_014910.1	460051	460302	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; alpha/beta hydrolase	complement(460051..460302)	Alicycliphilus denitrificans BC	
ALIDE_RS24670	CDS	ALIDE_RS24670	NC_014910.1	460574	460918	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	complement(<460574..460918)	Alicycliphilus denitrificans BC	
ALIDE_RS02200	CDS	ALIDE_RS02200	NC_014910.1	460827	461639	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	460827..461639	Alicycliphilus denitrificans BC	
ALIDE_RS02205	CDS	ALIDE_RS02205	NC_014910.1	461645	462178	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TPM domain-containing protein	complement(461645..462178)	Alicycliphilus denitrificans BC	
ALIDE_RS02210	CDS	ALIDE_RS02210	NC_014910.1	462192	463079	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TPM domain-containing protein	complement(462192..463079)	Alicycliphilus denitrificans BC	
ALIDE_RS02215	CDS	ALIDE_RS02215	NC_014910.1	463083	463688	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LemA family protein	complement(463083..463688)	Alicycliphilus denitrificans BC	
ALIDE_RS02220	CDS	ALIDE_RS02220	NC_014910.1	463827	464276	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nuclear transport factor 2 family protein	463827..464276	Alicycliphilus denitrificans BC	
ALIDE_RS02225	CDS	ALIDE_RS02225	NC_014910.1	464322	464858	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2946 family protein	464322..464858	Alicycliphilus denitrificans BC	
ALIDE_RS02230	CDS	ALIDE_RS02230	NC_014910.1	465014	465850	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome	complement(465014..465850)	Alicycliphilus denitrificans BC	
ALIDE_RS02235	CDS	ALIDE_RS02235	NC_014910.1	465980	467425	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux transporter outer membrane subunit	complement(465980..467425)	Alicycliphilus denitrificans BC	
ALIDE_RS02240	CDS	ALIDE_RS02240	NC_014910.1	467450	470605	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter permease subunit	complement(467450..470605)	Alicycliphilus denitrificans BC	
ALIDE_RS02245	CDS	ALIDE_RS02245	NC_014910.1	470624	471904	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	complement(470624..471904)	Alicycliphilus denitrificans BC	
ALIDE_RS02250	CDS	ALIDE_RS02250	NC_014910.1	472096	472716	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator	472096..472716	Alicycliphilus denitrificans BC	
ALIDE_RS02275	CDS	tuf	NC_014910.1	473372	474562	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor Tu	473372..474562	Alicycliphilus denitrificans BC	
ALIDE_RS02285	CDS	secE	NC_014910.1	474739	475122	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecE	474739..475122	Alicycliphilus denitrificans BC	
ALIDE_RS02290	CDS	nusG	NC_014910.1	475122	475712	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription termination/antitermination protein NusG	475122..475712	Alicycliphilus denitrificans BC	
ALIDE_RS02295	CDS	rplK	NC_014910.1	475844	476275	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L11	475844..476275	Alicycliphilus denitrificans BC	
ALIDE_RS02300	CDS	rplA	NC_014910.1	476276	476971	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L1	476276..476971	Alicycliphilus denitrificans BC	
ALIDE_RS02305	CDS	rplJ	NC_014910.1	477204	477710	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L10	477204..477710	Alicycliphilus denitrificans BC	
ALIDE_RS02310	CDS	rplL	NC_014910.1	477765	478145	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L7/L12	477765..478145	Alicycliphilus denitrificans BC	
ALIDE_RS02315	CDS	rpoB	NC_014910.1	478420	482544	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit beta	478420..482544	Alicycliphilus denitrificans BC	
ALIDE_RS02320	CDS	rpoC	NC_014910.1	482565	486794	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit beta'	482565..486794	Alicycliphilus denitrificans BC	
ALIDE_RS02325	CDS	ALIDE_RS02325	NC_014910.1	486914	487480	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LemA family protein	486914..487480	Alicycliphilus denitrificans BC	
ALIDE_RS02330	CDS	rsmB	NC_014910.1	487477	488844	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	487477..488844	Alicycliphilus denitrificans BC	
ALIDE_RS02335	CDS	ALIDE_RS02335	NC_014910.1	488888	489469	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4390 domain-containing protein	488888..489469	Alicycliphilus denitrificans BC	
ALIDE_RS02340	CDS	ALIDE_RS02340	NC_014910.1	489466	491754	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	489466..491754	Alicycliphilus denitrificans BC	
ALIDE_RS02345	CDS	ALIDE_RS02345	NC_014910.1	491794	492489	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	491794..492489	Alicycliphilus denitrificans BC	
ALIDE_RS02355	CDS	ALIDE_RS02355	NC_014910.1	492890	493840	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(492890..493840)	Alicycliphilus denitrificans BC	
ALIDE_RS02360	CDS	ALIDE_RS02360	NC_014910.1	493844	495079	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(493844..495079)	Alicycliphilus denitrificans BC	
ALIDE_RS02365	CDS	ALIDE_RS02365	NC_014910.1	495325	495654	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix transcriptional regulator	495325..495654	Alicycliphilus denitrificans BC	
ALIDE_RS02370	CDS	ALIDE_RS02370	NC_014910.1	495668	496597	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ImmA/IrrE family metallo-endopeptidase	495668..496597	Alicycliphilus denitrificans BC	
ALIDE_RS02375	CDS	istA	NC_014910.1	496744	498270	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21 family transposase	496744..498270	Alicycliphilus denitrificans BC	
ALIDE_RS02380	CDS	istB	NC_014910.1	498260	499063	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21-like element ISThsp10 family helper ATPase IstB	498260..499063	Alicycliphilus denitrificans BC	
ALIDE_RS02385	CDS	ALIDE_RS02385	NC_014910.1	498972	499874	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ImmA/IrrE family metallo-endopeptidase	498972..499874	Alicycliphilus denitrificans BC	
ALIDE_RS02390	CDS	ALIDE_RS02390	NC_014910.1	499891	500139	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	499891..500139	Alicycliphilus denitrificans BC	
ALIDE_RS23235	CDS	ALIDE_RS23235	NC_014910.1	500160	500621	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	500160..500621	Alicycliphilus denitrificans BC	
ALIDE_RS23240	CDS	ALIDE_RS23240	NC_014910.1	500766	502439	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-phage dCTP deaminase	500766..502439	Alicycliphilus denitrificans BC	
ALIDE_RS23965	CDS	ALIDE_RS23965	NC_014910.1	502411	502623	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	502411..502623	Alicycliphilus denitrificans BC	
ALIDE_RS02395	CDS	ALIDE_RS02395	NC_014910.1	503192	503596	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(503192..503596)	Alicycliphilus denitrificans BC	
ALIDE_RS23245	CDS	ALIDE_RS23245	NC_014910.1	503644	503889	D	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiolase family protein	<503644..503889	Alicycliphilus denitrificans BC	
ALIDE_RS02400	CDS	ALIDE_RS02400	NC_014910.1	503904	505244	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-glucose/GDP-mannose dehydrogenase family protein	complement(503904..505244)	Alicycliphilus denitrificans BC	
ALIDE_RS02405	CDS	ALIDE_RS02405	NC_014910.1	505241	506251	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent epimerase	complement(505241..506251)	Alicycliphilus denitrificans BC	
ALIDE_RS02410	CDS	ALIDE_RS02410	NC_014910.1	506248	507765	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 39 protein	complement(506248..507765)	Alicycliphilus denitrificans BC	
ALIDE_RS02415	CDS	ALIDE_RS02415	NC_014910.1	507869	508900	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 2 protein	507869..508900	Alicycliphilus denitrificans BC	
ALIDE_RS02420	CDS	ALIDE_RS02420	NC_014910.1	508897	509826	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lysylphosphatidylglycerol synthase transmembrane domain-containing protein	508897..509826	Alicycliphilus denitrificans BC	
ALIDE_RS02425	CDS	rsmI	NC_014910.1	510032	510970	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase	complement(510032..510970)	Alicycliphilus denitrificans BC	
ALIDE_RS02430	CDS	ALIDE_RS02430	NC_014910.1	510970	511368	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YraN family protein	510970..511368	Alicycliphilus denitrificans BC	
ALIDE_RS02435	CDS	ALIDE_RS02435	NC_014910.1	511429	512031	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SIS domain-containing protein	511429..512031	Alicycliphilus denitrificans BC	
ALIDE_RS02440	CDS	ALIDE_RS02440	NC_014910.1	512028	512693	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; BON domain-containing protein	512028..512693	Alicycliphilus denitrificans BC	
ALIDE_RS02445	CDS	ALIDE_RS02445	NC_014910.1	512722	513654	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)-dependent oxidoreductase	complement(512722..513654)	Alicycliphilus denitrificans BC	
ALIDE_RS02450	CDS	ALIDE_RS02450	NC_014910.1	513735	514871	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PilT/PilU family type 4a pilus ATPase	complement(513735..514871)	Alicycliphilus denitrificans BC	
ALIDE_RS02455	CDS	ALIDE_RS02455	NC_014910.1	514897	515526	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic nucleotide-binding domain-containing protein	complement(514897..515526)	Alicycliphilus denitrificans BC	
ALIDE_RS02460	CDS	ALIDE_RS02460	NC_014910.1	515591	516634	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pilus twitching motility protein PilT	complement(515591..516634)	Alicycliphilus denitrificans BC	
ALIDE_RS02465	CDS	ALIDE_RS02465	NC_014910.1	516674	517396	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YggS family pyridoxal phosphate-dependent enzyme	516674..517396	Alicycliphilus denitrificans BC	
ALIDE_RS02470	CDS	ALIDE_RS02470	NC_014910.1	517437	518567	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase class V-fold PLP-dependent enzyme	517437..518567	Alicycliphilus denitrificans BC	
ALIDE_RS02475	CDS	ALIDE_RS02475	NC_014910.1	518628	519050	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(518628..519050)	Alicycliphilus denitrificans BC	
ALIDE_RS02480	CDS	ALIDE_RS02480	NC_014910.1	519235	520536	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF445 domain-containing protein	519235..520536	Alicycliphilus denitrificans BC	
ALIDE_RS02485	CDS	ALIDE_RS02485	NC_014910.1	520594	522087	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-linked oxidase C-terminal domain-containing protein	complement(520594..522087)	Alicycliphilus denitrificans BC	
ALIDE_RS02490	CDS	ALIDE_RS02490	NC_014910.1	522154	523050	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(522154..523050)	Alicycliphilus denitrificans BC	
ALIDE_RS02495	CDS	purU	NC_014910.1	523050	523898	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; formyltetrahydrofolate deformylase	complement(523050..523898)	Alicycliphilus denitrificans BC	
ALIDE_RS02500	CDS	ALIDE_RS02500	NC_014910.1	523944	526610	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GGDEF and EAL domain-containing protein	523944..526610	Alicycliphilus denitrificans BC	
ALIDE_RS02505	CDS	ALIDE_RS02505	NC_014910.1	526611	527471	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ChaN family lipoprotein	complement(526611..527471)	Alicycliphilus denitrificans BC	
ALIDE_RS02510	CDS	ALIDE_RS02510	NC_014910.1	527738	530173	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	527738..530173	Alicycliphilus denitrificans BC	
ALIDE_RS02515	CDS	ALIDE_RS02515	NC_014910.1	530352	532268	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein	530352..532268	Alicycliphilus denitrificans BC	
ALIDE_RS02520	CDS	ALIDE_RS02520	NC_014910.1	532265	532939	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	532265..532939	Alicycliphilus denitrificans BC	
ALIDE_RS02525	CDS	ALIDE_RS02525	NC_014910.1	533168	534463	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate/nitrite transporter	533168..534463	Alicycliphilus denitrificans BC	
ALIDE_RS02530	CDS	ALIDE_RS02530	NC_014910.1	534482	535927	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NarK family nitrate/nitrite MFS transporter	534482..535927	Alicycliphilus denitrificans BC	
ALIDE_RS02535	CDS	ALIDE_RS02535	NC_014910.1	535964	539758	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase subunit alpha	535964..539758	Alicycliphilus denitrificans BC	
ALIDE_RS02540	CDS	narH	NC_014910.1	539777	541300	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase subunit beta	539777..541300	Alicycliphilus denitrificans BC	
ALIDE_RS02545	CDS	narJ	NC_014910.1	541312	542013	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase molybdenum cofactor assembly chaperone	541312..542013	Alicycliphilus denitrificans BC	
ALIDE_RS02550	CDS	narI	NC_014910.1	542010	542738	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; respiratory nitrate reductase subunit gamma	542010..542738	Alicycliphilus denitrificans BC	
ALIDE_RS02555	CDS	ALIDE_RS02555	NC_014910.1	542866	543693	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidylprolyl isomerase	542866..543693	Alicycliphilus denitrificans BC	
ALIDE_RS02560	CDS	ALIDE_RS02560	NC_014910.1	543728	544405	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; carbonic anhydrase	543728..544405	Alicycliphilus denitrificans BC	
ALIDE_RS02565	CDS	ALIDE_RS02565	NC_014910.1	544405	545055	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitroreductase family protein	544405..545055	Alicycliphilus denitrificans BC	
ALIDE_RS02570	CDS	ALIDE_RS02570	NC_014910.1	545052	545471	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	545052..545471	Alicycliphilus denitrificans BC	
ALIDE_RS02575	CDS	ALIDE_RS02575	NC_014910.1	545525	546073	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hemerythrin domain-containing protein	545525..546073	Alicycliphilus denitrificans BC	
ALIDE_RS02580	CDS	ALIDE_RS02580	NC_014910.1	546263	546550	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3567 domain-containing protein	complement(546263..546550)	Alicycliphilus denitrificans BC	
ALIDE_RS02585	CDS	ALIDE_RS02585	NC_014910.1	546684	547835	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3108 domain-containing protein	complement(546684..547835)	Alicycliphilus denitrificans BC	
ALIDE_RS02590	CDS	ALIDE_RS02590	NC_014910.1	548017	549006	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarylacetoacetate hydrolase family protein	548017..549006	Alicycliphilus denitrificans BC	
ALIDE_RS02595	CDS	ALIDE_RS02595	NC_014910.1	549265	551367	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 41 protein	549265..551367	Alicycliphilus denitrificans BC	
ALIDE_RS02600	CDS	ALIDE_RS02600	NC_014910.1	551428	553503	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin oxidoreductase family protein	complement(551428..553503)	Alicycliphilus denitrificans BC	
ALIDE_RS02605	CDS	ALIDE_RS02605	NC_014910.1	553624	554655	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(553624..554655)	Alicycliphilus denitrificans BC	
ALIDE_RS02610	CDS	ALIDE_RS02610	NC_014910.1	554696	555604	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA ester lyase	complement(554696..555604)	Alicycliphilus denitrificans BC	
ALIDE_RS02615	CDS	ALIDE_RS02615	NC_014910.1	555620	556852	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(555620..556852)	Alicycliphilus denitrificans BC	
ALIDE_RS02620	CDS	ALIDE_RS02620	NC_014910.1	556849	557352	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase	complement(556849..557352)	Alicycliphilus denitrificans BC	
ALIDE_RS02625	CDS	ALIDE_RS02625	NC_014910.1	557349	558599	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(557349..558599)	Alicycliphilus denitrificans BC	
ALIDE_RS02630	CDS	ALIDE_RS02630	NC_014910.1	558604	559107	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase	complement(558604..559107)	Alicycliphilus denitrificans BC	
ALIDE_RS02635	CDS	ALIDE_RS02635	NC_014910.1	559104	560483	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	complement(559104..560483)	Alicycliphilus denitrificans BC	
ALIDE_RS02640	CDS	ALIDE_RS02640	NC_014910.1	560689	561564	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA ester lyase	560689..561564	Alicycliphilus denitrificans BC	
ALIDE_RS02645	CDS	ALIDE_RS02645	NC_014910.1	561571	562329	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	561571..562329	Alicycliphilus denitrificans BC	
ALIDE_RS02650	CDS	ALIDE_RS02650	NC_014910.1	562431	563636	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; M20 aminoacylase family protein	562431..563636	Alicycliphilus denitrificans BC	
ALIDE_RS02655	CDS	ALIDE_RS02655	NC_014910.1	563705	563962	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA-binding protein	563705..563962	Alicycliphilus denitrificans BC	
ALIDE_RS02660	CDS	ALIDE_RS02660	NC_014910.1	563965	565068	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase	complement(563965..565068)	Alicycliphilus denitrificans BC	
ALIDE_RS02665	CDS	ALIDE_RS02665	NC_014910.1	565090	565734	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-3-methyladenine glycosylase I	565090..565734	Alicycliphilus denitrificans BC	
ALIDE_RS24550	CDS	ALIDE_RS24550	NC_014910.1	565868	566029	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(565868..566029)	Alicycliphilus denitrificans BC	
ALIDE_RS02670	CDS	ALIDE_RS02670	NC_014910.1	566310	567608	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	566310..567608	Alicycliphilus denitrificans BC	
ALIDE_RS02675	CDS	ALIDE_RS02675	NC_014910.1	567630	567950	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1840 domain-containing protein	567630..567950	Alicycliphilus denitrificans BC	
ALIDE_RS02680	CDS	ALIDE_RS02680	NC_014910.1	567973	568989	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(567973..568989)	Alicycliphilus denitrificans BC	
ALIDE_RS02685	CDS	ALIDE_RS02685	NC_014910.1	569132	570121	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	complement(569132..570121)	Alicycliphilus denitrificans BC	
ALIDE_RS02690	CDS	ALIDE_RS02690	NC_014910.1	570248	571495	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(570248..571495)	Alicycliphilus denitrificans BC	
ALIDE_RS02695	CDS	ALIDE_RS02695	NC_014910.1	571586	572428	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(571586..572428)	Alicycliphilus denitrificans BC	
ALIDE_RS02700	CDS	ALIDE_RS02700	NC_014910.1	572568	573881	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(572568..573881)	Alicycliphilus denitrificans BC	
ALIDE_RS02705	CDS	ALIDE_RS02705	NC_014910.1	573940	575004	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	complement(573940..575004)	Alicycliphilus denitrificans BC	
ALIDE_RS02710	CDS	ALIDE_RS02710	NC_014910.1	575026	575955	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	complement(575026..575955)	Alicycliphilus denitrificans BC	
ALIDE_RS02715	CDS	ALIDE_RS02715	NC_014910.1	575976	576761	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(575976..576761)	Alicycliphilus denitrificans BC	
ALIDE_RS02720	CDS	ALIDE_RS02720	NC_014910.1	576780	578711	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(576780..578711)	Alicycliphilus denitrificans BC	
ALIDE_RS02725	CDS	ALIDE_RS02725	NC_014910.1	578932	580623	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AAA family ATPase	578932..580623	Alicycliphilus denitrificans BC	
ALIDE_RS02730	CDS	ALIDE_RS02730	NC_014910.1	580628	581332	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein GspB	580628..581332	Alicycliphilus denitrificans BC	
ALIDE_RS02735	CDS	ALIDE_RS02735	NC_014910.1	581474	582253	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator	581474..582253	Alicycliphilus denitrificans BC	
ALIDE_RS02740	CDS	ALIDE_RS02740	NC_014910.1	582292	583212	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pseudouridine synthase	582292..583212	Alicycliphilus denitrificans BC	
ALIDE_RS02745	CDS	htpG	NC_014910.1	583310	585271	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone HtpG	583310..585271	Alicycliphilus denitrificans BC	
ALIDE_RS02750	CDS	ALIDE_RS02750	NC_014910.1	585304	585789	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	585304..585789	Alicycliphilus denitrificans BC	
ALIDE_RS02755	CDS	ALIDE_RS02755	NC_014910.1	585882	586862	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	585882..586862	Alicycliphilus denitrificans BC	
ALIDE_RS02760	CDS	ALIDE_RS02760	NC_014910.1	586863	587906	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein kinase	complement(586863..587906)	Alicycliphilus denitrificans BC	
ALIDE_RS02765	CDS	ALIDE_RS02765	NC_014910.1	587929	589377	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional serine/threonine-protein kinase/universal stress protein	complement(587929..589377)	Alicycliphilus denitrificans BC	
ALIDE_RS02770	CDS	ALIDE_RS02770	NC_014910.1	589381	590139	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; metallophosphoesterase family protein	complement(589381..590139)	Alicycliphilus denitrificans BC	
ALIDE_RS02775	CDS	ALIDE_RS02775	NC_014910.1	590369	591565	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	590369..591565	Alicycliphilus denitrificans BC	
ALIDE_RS02780	CDS	ALIDE_RS02780	NC_014910.1	591599	592060	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase	591599..592060	Alicycliphilus denitrificans BC	
ALIDE_RS02785	CDS	ALIDE_RS02785	NC_014910.1	592113	593111	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	592113..593111	Alicycliphilus denitrificans BC	
ALIDE_RS02790	CDS	ALIDE_RS02790	NC_014910.1	593158	594006	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxybutyryl-CoA dehydrogenase	complement(593158..594006)	Alicycliphilus denitrificans BC	
ALIDE_RS02795	CDS	ALIDE_RS02795	NC_014910.1	594106	595698	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; choline dehydrogenase	594106..595698	Alicycliphilus denitrificans BC	
ALIDE_RS24675	CDS	ALIDE_RS24675	NC_014910.1	595815	596084	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	595815..>596084	Alicycliphilus denitrificans BC	
ALIDE_RS02800	CDS	ALIDE_RS02800	NC_014910.1	595976	596383	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(595976..596383)	Alicycliphilus denitrificans BC	
ALIDE_RS02805	CDS	ALIDE_RS02805	NC_014910.1	596410	597228	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	complement(596410..597228)	Alicycliphilus denitrificans BC	
ALIDE_RS02810	CDS	ALIDE_RS02810	NC_014910.1	597230	598171	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding cassette domain-containing protein	complement(597230..598171)	Alicycliphilus denitrificans BC	
ALIDE_RS02815	CDS	ALIDE_RS02815	NC_014910.1	598276	599988	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tannase/feruloyl esterase family alpha/beta hydrolase	complement(598276..599988)	Alicycliphilus denitrificans BC	
ALIDE_RS02820	CDS	ALIDE_RS02820	NC_014910.1	600130	601614	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP nucleosidase	complement(600130..601614)	Alicycliphilus denitrificans BC	
ALIDE_RS02825	CDS	ALIDE_RS02825	NC_014910.1	601650	603746	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional diguanylate cyclase/phosphodiesterase	complement(601650..603746)	Alicycliphilus denitrificans BC	
ALIDE_RS02830	CDS	ALIDE_RS02830	NC_014910.1	603849	604802	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation diffusion facilitator family transporter	603849..604802	Alicycliphilus denitrificans BC	
ALIDE_RS02835	CDS	dtd	NC_014910.1	604799	605242	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-aminoacyl-tRNA deacylase	604799..605242	Alicycliphilus denitrificans BC	
ALIDE_RS02840	CDS	ALIDE_RS02840	NC_014910.1	605308	606054	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite exporter TauE/SafE family protein	complement(605308..606054)	Alicycliphilus denitrificans BC	
ALIDE_RS02845	CDS	ALIDE_RS02845	NC_014910.1	606220	607167	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(606220..607167)	Alicycliphilus denitrificans BC	
ALIDE_RS02850	CDS	ALIDE_RS02850	NC_014910.1	607272	608243	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	607272..608243	Alicycliphilus denitrificans BC	
ALIDE_RS02855	CDS	ALIDE_RS02855	NC_014910.1	608263	609513	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	608263..609513	Alicycliphilus denitrificans BC	
ALIDE_RS02860	CDS	ALIDE_RS02860	NC_014910.1	609546	610532	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MDR family oxidoreductase	609546..610532	Alicycliphilus denitrificans BC	
ALIDE_RS02865	CDS	ALIDE_RS02865	NC_014910.1	610588	612147	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	610588..612147	Alicycliphilus denitrificans BC	
ALIDE_RS02870	CDS	ybeY	NC_014910.1	612164	612616	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA maturation RNase YbeY	complement(612164..612616)	Alicycliphilus denitrificans BC	
ALIDE_RS02875	CDS	ALIDE_RS02875	NC_014910.1	612668	613618	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoH family protein	complement(612668..613618)	Alicycliphilus denitrificans BC	
ALIDE_RS02880	CDS	ruvA	NC_014910.1	613666	614238	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction branch migration protein RuvA	613666..614238	Alicycliphilus denitrificans BC	
ALIDE_RS02885	CDS	ALIDE_RS02885	NC_014910.1	614275	615756	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	614275..615756	Alicycliphilus denitrificans BC	
ALIDE_RS02890	CDS	ALIDE_RS02890	NC_014910.1	615770	618574	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Hsp70 family protein	complement(615770..618574)	Alicycliphilus denitrificans BC	
ALIDE_RS02895	CDS	ALIDE_RS02895	NC_014910.1	618571	620463	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Hsp70 family protein	complement(618571..620463)	Alicycliphilus denitrificans BC	
ALIDE_RS02900	CDS	ALIDE_RS02900	NC_014910.1	620460	621065	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2760 domain-containing protein	complement(620460..621065)	Alicycliphilus denitrificans BC	
ALIDE_RS02905	CDS	ruvB	NC_014910.1	621177	622250	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction branch migration DNA helicase RuvB	621177..622250	Alicycliphilus denitrificans BC	
ALIDE_RS02910	CDS	ALIDE_RS02910	NC_014910.1	622260	622982	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MgtC/SapB family protein	complement(622260..622982)	Alicycliphilus denitrificans BC	
ALIDE_RS02915	CDS	ALIDE_RS02915	NC_014910.1	623038	623388	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(623038..623388)	Alicycliphilus denitrificans BC	
ALIDE_RS02920	CDS	ALIDE_RS02920	NC_014910.1	623496	623690	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(623496..623690)	Alicycliphilus denitrificans BC	
ALIDE_RS02925	CDS	ALIDE_RS02925	NC_014910.1	624034	625197	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DSD1 family PLP-dependent enzyme	complement(624034..625197)	Alicycliphilus denitrificans BC	
ALIDE_RS02930	CDS	ALIDE_RS02930	NC_014910.1	625181	625828	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine phosphatase family protein	complement(625181..625828)	Alicycliphilus denitrificans BC	
ALIDE_RS02935	CDS	ALIDE_RS02935	NC_014910.1	625836	626450	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4136 domain-containing protein	complement(625836..626450)	Alicycliphilus denitrificans BC	
ALIDE_RS02940	CDS	ttcA	NC_014910.1	626624	627556	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA 2-thiocytidine(32) synthetase TtcA	complement(626624..627556)	Alicycliphilus denitrificans BC	
ALIDE_RS02945	CDS	ALIDE_RS02945	NC_014910.1	627561	627953	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin aldolase	complement(627561..627953)	Alicycliphilus denitrificans BC	
ALIDE_RS02950	CDS	ALIDE_RS02950	NC_014910.1	627958	628371	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin aldolase	complement(627958..628371)	Alicycliphilus denitrificans BC	
ALIDE_RS02955	CDS	ALIDE_RS02955	NC_014910.1	628368	629174	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	complement(628368..629174)	Alicycliphilus denitrificans BC	
ALIDE_RS02960	CDS	ALIDE_RS02960	NC_014910.1	629313	630398	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SAM-dependent methyltransferase	629313..630398	Alicycliphilus denitrificans BC	
ALIDE_RS02965	CDS	ALIDE_RS02965	NC_014910.1	630425	630829	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	630425..630829	Alicycliphilus denitrificans BC	
ALIDE_RS02970	CDS	ALIDE_RS02970	NC_014910.1	630833	631027	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2905 domain-containing protein	630833..631027	Alicycliphilus denitrificans BC	
ALIDE_RS02975	CDS	ALIDE_RS02975	NC_014910.1	631170	632129	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ROK family protein	631170..632129	Alicycliphilus denitrificans BC	
ALIDE_RS02980	CDS	ALIDE_RS02980	NC_014910.1	632090	633481	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate synthase	complement(632090..633481)	Alicycliphilus denitrificans BC	
ALIDE_RS02985	CDS	ALIDE_RS02985	NC_014910.1	633478	635278	R	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycoside hydrolase family 15 protein	complement(633478..635278)	Alicycliphilus denitrificans BC	
ALIDE_RS02990	CDS	otsB	NC_014910.1	635284	636039	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-phosphatase	complement(635284..636039)	Alicycliphilus denitrificans BC	
ALIDE_RS02995	CDS	trxC	NC_014910.1	636191	636628	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin TrxC	636191..636628	Alicycliphilus denitrificans BC	
ALIDE_RS03000	CDS	ALIDE_RS03000	NC_014910.1	636617	637864	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional CCA addition/repair protein	complement(636617..637864)	Alicycliphilus denitrificans BC	
ALIDE_RS03005	CDS	ALIDE_RS03005	NC_014910.1	637931	638914	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54 dependent transcriptional regulator	637931..638914	Alicycliphilus denitrificans BC	
ALIDE_RS03010	CDS	ALIDE_RS03010	NC_014910.1	639099	640460	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyclic terpene utilization AtuA family protein	639099..640460	Alicycliphilus denitrificans BC	
ALIDE_RS03015	CDS	ALIDE_RS03015	NC_014910.1	640475	640795	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4387 domain-containing protein	640475..640795	Alicycliphilus denitrificans BC	
ALIDE_RS03020	CDS	ALIDE_RS03020	NC_014910.1	640833	641804	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	640833..641804	Alicycliphilus denitrificans BC	
ALIDE_RS03025	CDS	ALIDE_RS03025	NC_014910.1	641806	642576	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; metallophosphoesterase	complement(641806..642576)	Alicycliphilus denitrificans BC	
ALIDE_RS03030	CDS	ALIDE_RS03030	NC_014910.1	642595	643281	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase family protein	complement(642595..643281)	Alicycliphilus denitrificans BC	
ALIDE_RS03035	CDS	ALIDE_RS03035	NC_014910.1	643370	643942	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-formyltetrahydrofolate cyclo-ligase	complement(643370..643942)	Alicycliphilus denitrificans BC	
ALIDE_RS03040	CDS	ALIDE_RS03040	NC_014910.1	643957	645939	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic transglycosylase domain-containing protein	643957..645939	Alicycliphilus denitrificans BC	
ALIDE_RS03045	CDS	ALIDE_RS03045	NC_014910.1	646002	646529	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome b/b6 domain-containing protein	complement(646002..646529)	Alicycliphilus denitrificans BC	
ALIDE_RS03050	CDS	ALIDE_RS03050	NC_014910.1	646529	646801	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY domain-containing protein	complement(646529..646801)	Alicycliphilus denitrificans BC	
ALIDE_RS03055	CDS	ALIDE_RS03055	NC_014910.1	646938	647621	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe2+-dependent dioxygenase	complement(646938..647621)	Alicycliphilus denitrificans BC	
ALIDE_RS03060	CDS	ALIDE_RS03060	NC_014910.1	647615	648712	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-hydroxy acid oxidase	complement(647615..648712)	Alicycliphilus denitrificans BC	
ALIDE_RS03065	CDS	ALIDE_RS03065	NC_014910.1	648766	651054	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor	complement(648766..651054)	Alicycliphilus denitrificans BC	
ALIDE_RS03070	CDS	ALIDE_RS03070	NC_014910.1	651209	652135	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MBL fold metallo-hydrolase	complement(651209..652135)	Alicycliphilus denitrificans BC	
ALIDE_RS03075	CDS	ALIDE_RS03075	NC_014910.1	652154	653839	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(652154..653839)	Alicycliphilus denitrificans BC	
ALIDE_RS03080	CDS	ALIDE_RS03080	NC_014910.1	653962	654864	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta fold hydrolase	653962..654864	Alicycliphilus denitrificans BC	
ALIDE_RS03085	CDS	fabB	NC_014910.1	654967	656184	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-ketoacyl-ACP synthase I	complement(654967..656184)	Alicycliphilus denitrificans BC	
ALIDE_RS03090	CDS	fabA	NC_014910.1	656199	656705	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	complement(656199..656705)	Alicycliphilus denitrificans BC	
ALIDE_RS03095	CDS	lnt	NC_014910.1	656794	658383	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; apolipoprotein N-acyltransferase	complement(656794..658383)	Alicycliphilus denitrificans BC	
ALIDE_RS03100	CDS	ALIDE_RS03100	NC_014910.1	658383	659270	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter associated domain-containing protein	complement(658383..659270)	Alicycliphilus denitrificans BC	
ALIDE_RS03105	CDS	ALIDE_RS03105	NC_014910.1	659381	660082	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	complement(659381..660082)	Alicycliphilus denitrificans BC	
ALIDE_RS03110	CDS	ALIDE_RS03110	NC_014910.1	660233	660718	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Lrp/AsnC family transcriptional regulator	complement(660233..660718)	Alicycliphilus denitrificans BC	
ALIDE_RS03115	CDS	hppD	NC_014910.1	660878	661999	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxyphenylpyruvate dioxygenase	660878..661999	Alicycliphilus denitrificans BC	
ALIDE_RS03120	CDS	phhA	NC_014910.1	662001	662825	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanine 4-monooxygenase	662001..662825	Alicycliphilus denitrificans BC	
ALIDE_RS03125	CDS	ALIDE_RS03125	NC_014910.1	662966	664201	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha	662966..664201	Alicycliphilus denitrificans BC	
ALIDE_RS03130	CDS	ALIDE_RS03130	NC_014910.1	664241	665245	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoacid dehydrogenase subunit beta	664241..665245	Alicycliphilus denitrificans BC	
ALIDE_RS03135	CDS	ALIDE_RS03135	NC_014910.1	665247	666554	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide acetyltransferase family protein	665247..666554	Alicycliphilus denitrificans BC	
ALIDE_RS03140	CDS	lpdA	NC_014910.1	666562	667959	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoyl dehydrogenase	666562..667959	Alicycliphilus denitrificans BC	
ALIDE_RS03145	CDS	glyQ	NC_014910.1	668064	669002	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine--tRNA ligase subunit alpha	668064..669002	Alicycliphilus denitrificans BC	
ALIDE_RS03150	CDS	glyS	NC_014910.1	669022	671187	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine--tRNA ligase subunit beta	669022..671187	Alicycliphilus denitrificans BC	
ALIDE_RS03155	CDS	gmhB	NC_014910.1	671233	671808	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	671233..671808	Alicycliphilus denitrificans BC	
ALIDE_RS03160	CDS	ALIDE_RS03160	NC_014910.1	672059	672802	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipid acyltransferase family protein	672059..672802	Alicycliphilus denitrificans BC	
ALIDE_RS03165	CDS	ALIDE_RS03165	NC_014910.1	672805	673608	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SprT family zinc-dependent metalloprotease	672805..673608	Alicycliphilus denitrificans BC	
ALIDE_RS03170	CDS	ALIDE_RS03170	NC_014910.1	673669	674103	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; rhodanese-like domain-containing protein	673669..674103	Alicycliphilus denitrificans BC	
ALIDE_RS03175	CDS	lysM	NC_014910.1	674108	674596	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-binding protein LysM	complement(674108..674596)	Alicycliphilus denitrificans BC	
ALIDE_RS03180	CDS	ALIDE_RS03180	NC_014910.1	674743	675519	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type III pantothenate kinase	674743..675519	Alicycliphilus denitrificans BC	
ALIDE_RS03185	CDS	ALIDE_RS03185	NC_014910.1	675516	676193	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	complement(675516..676193)	Alicycliphilus denitrificans BC	
ALIDE_RS03190	CDS	ALIDE_RS03190	NC_014910.1	676351	676794	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phasin family protein	complement(676351..676794)	Alicycliphilus denitrificans BC	
ALIDE_RS03195	CDS	rfbB	NC_014910.1	676993	678054	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dTDP-glucose 4,6-dehydratase	676993..678054	Alicycliphilus denitrificans BC	
ALIDE_RS03200	CDS	rfbD	NC_014910.1	678051	678929	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dTDP-4-dehydrorhamnose reductase	678051..678929	Alicycliphilus denitrificans BC	
ALIDE_RS03205	CDS	rfbA	NC_014910.1	678940	679830	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphate thymidylyltransferase RfbA	678940..679830	Alicycliphilus denitrificans BC	
ALIDE_RS03210	CDS	rfbC	NC_014910.1	679830	680375	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dTDP-4-dehydrorhamnose 3,5-epimerase	679830..680375	Alicycliphilus denitrificans BC	
ALIDE_RS03215	CDS	ALIDE_RS03215	NC_014910.1	680372	681547	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1972 domain-containing protein	680372..681547	Alicycliphilus denitrificans BC	
ALIDE_RS03220	CDS	ALIDE_RS03220	NC_014910.1	681544	682455	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 2 protein	681544..682455	Alicycliphilus denitrificans BC	
ALIDE_RS03225	CDS	ALIDE_RS03225	NC_014910.1	682463	684166	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATPase, T2SS/T4P/T4SS family	682463..684166	Alicycliphilus denitrificans BC	
ALIDE_RS03230	CDS	ALIDE_RS03230	NC_014910.1	684159	685370	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system F family protein	684159..685370	Alicycliphilus denitrificans BC	
ALIDE_RS03235	CDS	gspG	NC_014910.1	685397	685837	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system major pseudopilin GspG	685397..685837	Alicycliphilus denitrificans BC	
ALIDE_RS03240	CDS	ALIDE_RS03240	NC_014910.1	685867	686349	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GspH/FimT family pseudopilin	685867..686349	Alicycliphilus denitrificans BC	
ALIDE_RS03245	CDS	ALIDE_RS03245	NC_014910.1	686346	686747	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; prepilin-type N-terminal cleavage/methylation domain-containing protein	686346..686747	Alicycliphilus denitrificans BC	
ALIDE_RS03250	CDS	ALIDE_RS03250	NC_014910.1	686744	687355	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; prepilin-type N-terminal cleavage/methylation domain-containing protein	686744..687355	Alicycliphilus denitrificans BC	
ALIDE_RS03255	CDS	ALIDE_RS03255	NC_014910.1	687352	688263	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system protein GspK	687352..688263	Alicycliphilus denitrificans BC	
ALIDE_RS03260	CDS	ALIDE_RS03260	NC_014910.1	688260	689273	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PilN domain-containing protein	688260..689273	Alicycliphilus denitrificans BC	
ALIDE_RS03265	CDS	gspM	NC_014910.1	689270	689818	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system protein GspM	689270..689818	Alicycliphilus denitrificans BC	
ALIDE_RS24680	CDS	ALIDE_RS24680	NC_014910.1	689815	690300	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	689815..690300	Alicycliphilus denitrificans BC	
ALIDE_RS03275	CDS	gspD	NC_014910.1	690474	692777	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system secretin GspD	690474..692777	Alicycliphilus denitrificans BC	
ALIDE_RS03280	CDS	ALIDE_RS03280	NC_014910.1	692992	693435	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	692992..693435	Alicycliphilus denitrificans BC	
ALIDE_RS03285	CDS	ALIDE_RS03285	NC_014910.1	693609	694457	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	693609..694457	Alicycliphilus denitrificans BC	
ALIDE_RS03290	CDS	ALIDE_RS03290	NC_014910.1	694570	695670	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; VCBS repeat-containing protein	694570..695670	Alicycliphilus denitrificans BC	
ALIDE_RS03295	CDS	ALIDE_RS03295	NC_014910.1	695692	696597	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidylprolyl isomerase	695692..696597	Alicycliphilus denitrificans BC	
ALIDE_RS03300	CDS	ALIDE_RS03300	NC_014910.1	696663	697319	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase domain-containing protein	696663..697319	Alicycliphilus denitrificans BC	
ALIDE_RS03305	CDS	ALIDE_RS03305	NC_014910.1	697509	698483	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 2 protein	697509..698483	Alicycliphilus denitrificans BC	
ALIDE_RS03310	CDS	ALIDE_RS03310	NC_014910.1	698552	699793	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 4 protein	698552..699793	Alicycliphilus denitrificans BC	
ALIDE_RS03315	CDS	ALIDE_RS03315	NC_014910.1	699825	700688	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	699825..700688	Alicycliphilus denitrificans BC	
ALIDE_RS03320	CDS	ALIDE_RS03320	NC_014910.1	700688	701908	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	700688..701908	Alicycliphilus denitrificans BC	
ALIDE_RS03325	CDS	ALIDE_RS03325	NC_014910.1	701890	702801	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	701890..702801	Alicycliphilus denitrificans BC	
ALIDE_RS03330	CDS	ALIDE_RS03330	NC_014910.1	702794	703798	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	702794..703798	Alicycliphilus denitrificans BC	
ALIDE_RS03335	CDS	ALIDE_RS03335	NC_014910.1	703800	704459	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transglycosylase SLT domain-containing protein	703800..704459	Alicycliphilus denitrificans BC	
ALIDE_RS03340	CDS	ALIDE_RS03340	NC_014910.1	704493	705593	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase	704493..705593	Alicycliphilus denitrificans BC	
ALIDE_RS03345	CDS	argB	NC_014910.1	705654	706544	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylglutamate kinase	705654..706544	Alicycliphilus denitrificans BC	
ALIDE_RS03350	CDS	slmA	NC_014910.1	706727	707362	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoid occlusion factor SlmA	706727..707362	Alicycliphilus denitrificans BC	
ALIDE_RS03355	CDS	ALIDE_RS03355	NC_014910.1	707504	708160	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	707504..708160	Alicycliphilus denitrificans BC	
ALIDE_RS03360	CDS	ALIDE_RS03360	NC_014910.1	708208	710004	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase C-terminal domain-containing protein	708208..710004	Alicycliphilus denitrificans BC	
ALIDE_RS03365	CDS	ALIDE_RS03365	NC_014910.1	710075	710503	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2147 domain-containing protein	710075..710503	Alicycliphilus denitrificans BC	
ALIDE_RS03370	CDS	ALIDE_RS03370	NC_014910.1	710525	712927	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	710525..712927	Alicycliphilus denitrificans BC	
ALIDE_RS03375	CDS	ALIDE_RS03375	NC_014910.1	712948	714141	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA C-acyltransferase	712948..714141	Alicycliphilus denitrificans BC	
ALIDE_RS03380	CDS	ALIDE_RS03380	NC_014910.1	714185	715018	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioesterase family protein	714185..715018	Alicycliphilus denitrificans BC	
ALIDE_RS03385	CDS	ALIDE_RS03385	NC_014910.1	715026	715802	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase	715026..715802	Alicycliphilus denitrificans BC	
ALIDE_RS03390	CDS	ALIDE_RS03390	NC_014910.1	716058	716615	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; polymer-forming cytoskeletal protein	716058..716615	Alicycliphilus denitrificans BC	
ALIDE_RS03395	CDS	ALIDE_RS03395	NC_014910.1	716667	717092	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase	complement(716667..717092)	Alicycliphilus denitrificans BC	
ALIDE_RS03400	CDS	ALIDE_RS03400	NC_014910.1	717135	719024	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein/permease	717135..719024	Alicycliphilus denitrificans BC	
ALIDE_RS03405	CDS	ALIDE_RS03405	NC_014910.1	719354	720970	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	719354..720970	Alicycliphilus denitrificans BC	
ALIDE_RS03410	CDS	ALIDE_RS03410	NC_014910.1	720974	721444	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC/PaaZ C-terminal domain-containing protein	720974..721444	Alicycliphilus denitrificans BC	
ALIDE_RS03415	CDS	ALIDE_RS03415	NC_014910.1	721484	722479	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	721484..722479	Alicycliphilus denitrificans BC	
ALIDE_RS03420	CDS	ALIDE_RS03420	NC_014910.1	722528	723505	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitronate monooxygenase family protein	722528..723505	Alicycliphilus denitrificans BC	
ALIDE_RS03425	CDS	ALIDE_RS03425	NC_014910.1	723514	724503	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	723514..724503	Alicycliphilus denitrificans BC	
ALIDE_RS24685	CDS	ALIDE_RS24685	NC_014910.1	724552	724857	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotide pyrophosphohydrolase	724552..>724857	Alicycliphilus denitrificans BC	
ALIDE_RS24380	CDS	ALIDE_RS24380	NC_014910.1	724930	725889	D	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; PIN domain-containing protein	<724930..725889	Alicycliphilus denitrificans BC	
ALIDE_RS03435	CDS	ALIDE_RS03435	NC_014910.1	725944	726975	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DctP family TRAP transporter solute-binding subunit	complement(725944..726975)	Alicycliphilus denitrificans BC	
ALIDE_RS03440	CDS	ALIDE_RS03440	NC_014910.1	726999	728297	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter large permease	complement(726999..728297)	Alicycliphilus denitrificans BC	
ALIDE_RS03445	CDS	ALIDE_RS03445	NC_014910.1	728294	728875	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter small permease	complement(728294..728875)	Alicycliphilus denitrificans BC	
ALIDE_RS03450	CDS	ALIDE_RS03450	NC_014910.1	729051	729989	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	729051..729989	Alicycliphilus denitrificans BC	
ALIDE_RS03455	CDS	ALIDE_RS03455	NC_014910.1	730193	731092	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter substrate-binding domain-containing protein	730193..731092	Alicycliphilus denitrificans BC	
ALIDE_RS03460	CDS	ALIDE_RS03460	NC_014910.1	731196	731948	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease	731196..731948	Alicycliphilus denitrificans BC	
ALIDE_RS03465	CDS	ALIDE_RS03465	NC_014910.1	731950	732621	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease	731950..732621	Alicycliphilus denitrificans BC	
ALIDE_RS03470	CDS	ALIDE_RS03470	NC_014910.1	732646	733383	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein	732646..733383	Alicycliphilus denitrificans BC	
ALIDE_RS03475	CDS	ALIDE_RS03475	NC_014910.1	733489	734523	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine cyclodeaminase	complement(733489..734523)	Alicycliphilus denitrificans BC	
ALIDE_RS03480	CDS	ALIDE_RS03480	NC_014910.1	734584	735405	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAD-IIB family hydrolase	complement(734584..735405)	Alicycliphilus denitrificans BC	
ALIDE_RS03485	CDS	ALIDE_RS03485	NC_014910.1	735408	737033	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 3	complement(735408..737033)	Alicycliphilus denitrificans BC	
ALIDE_RS03490	CDS	ALIDE_RS03490	NC_014910.1	737136	737906	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	complement(737136..737906)	Alicycliphilus denitrificans BC	
ALIDE_RS03495	CDS	ahcY	NC_014910.1	738148	739578	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylhomocysteinase	738148..739578	Alicycliphilus denitrificans BC	
ALIDE_RS03500	CDS	ALIDE_RS03500	NC_014910.1	739685	740686	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TlyA family RNA methyltransferase	739685..740686	Alicycliphilus denitrificans BC	
ALIDE_RS03505	CDS	metF	NC_014910.1	740683	741510	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methylenetetrahydrofolate reductase [NAD(P)H]	740683..741510	Alicycliphilus denitrificans BC	
ALIDE_RS23885	CDS	ALIDE_RS23885	NC_014910.1	741549	742256	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; septal ring lytic transglycosylase RlpA family protein	741549..742256	Alicycliphilus denitrificans BC	
ALIDE_RS03515	CDS	rlmJ	NC_014910.1	742257	743150	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	complement(742257..743150)	Alicycliphilus denitrificans BC	
ALIDE_RS03520	CDS	ALIDE_RS03520	NC_014910.1	743351	745147	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine-protein kinase	743351..745147	Alicycliphilus denitrificans BC	
ALIDE_RS03525	CDS	rplM	NC_014910.1	745292	745720	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L13	745292..745720	Alicycliphilus denitrificans BC	
ALIDE_RS03530	CDS	rpsI	NC_014910.1	745730	746122	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S9	745730..746122	Alicycliphilus denitrificans BC	
ALIDE_RS03535	CDS	erpA	NC_014910.1	746286	746660	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster insertion protein ErpA	746286..746660	Alicycliphilus denitrificans BC	
ALIDE_RS23255	CDS	ALIDE_RS23255	NC_014910.1	746737	747225	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(746737..747225)	Alicycliphilus denitrificans BC	
ALIDE_RS03540	CDS	ALIDE_RS03540	NC_014910.1	747617	748741	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; anhydro-N-acetylmuramic acid kinase	complement(747617..748741)	Alicycliphilus denitrificans BC	
ALIDE_RS03545	CDS	ALIDE_RS03545	NC_014910.1	748757	750139	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M23 family metallopeptidase	complement(748757..750139)	Alicycliphilus denitrificans BC	
ALIDE_RS03550	CDS	tyrS	NC_014910.1	750311	751543	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine--tRNA ligase	750311..751543	Alicycliphilus denitrificans BC	
ALIDE_RS03555	CDS	ALIDE_RS03555	NC_014910.1	751605	752570	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(751605..752570)	Alicycliphilus denitrificans BC	
ALIDE_RS03560	CDS	glmU	NC_014910.1	752622	754046	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	752622..754046	Alicycliphilus denitrificans BC	
ALIDE_RS03565	CDS	ALIDE_RS03565	NC_014910.1	754043	754825	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	754043..754825	Alicycliphilus denitrificans BC	
ALIDE_RS03570	CDS	ALIDE_RS03570	NC_014910.1	754854	755189	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone modulator CbpM	complement(754854..755189)	Alicycliphilus denitrificans BC	
ALIDE_RS03575	CDS	ALIDE_RS03575	NC_014910.1	755192	756187	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DnaJ C-terminal domain-containing protein	complement(755192..756187)	Alicycliphilus denitrificans BC	
ALIDE_RS03580	CDS	ALIDE_RS03580	NC_014910.1	756292	756783	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AsnC family transcriptional regulator	complement(756292..756783)	Alicycliphilus denitrificans BC	
ALIDE_RS03585	CDS	glmS	NC_014910.1	756918	758828	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine--fructose-6-phosphate transaminase (isomerizing)	756918..758828	Alicycliphilus denitrificans BC	
ALIDE_RS03590	CDS	ALIDE_RS03590	NC_014910.1	759177	761135	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4209 domain-containing protein	759177..761135	Alicycliphilus denitrificans BC	
ALIDE_RS24935	CDS	xseB	NC_014910.1	761316	761432	R	incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII small subunit	complement(<761316..>761432)	Alicycliphilus denitrificans BC	
ALIDE_RS24690	CDS	ALIDE_RS24690	NC_014910.1	761494	761739	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII large subunit	complement(761494..761739)	Alicycliphilus denitrificans BC	
ALIDE_RS03595	CDS	ALIDE_RS03595	NC_014910.1	761673	762944	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII large subunit	complement(761673..762944)	Alicycliphilus denitrificans BC	
ALIDE_RS24695	CDS	ALIDE_RS24695	NC_014910.1	762920	763231	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF5710 domain-containing protein	complement(762920..763231)	Alicycliphilus denitrificans BC	
ALIDE_RS03600	CDS	ALIDE_RS03600	NC_014910.1	763505	764739	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	complement(join(763505..764451,764451..764739))	Alicycliphilus denitrificans BC	
ALIDE_RS03615	CDS	ALIDE_RS03615	NC_014910.1	765493	765747	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(765493..765747)	Alicycliphilus denitrificans BC	
ALIDE_RS03620	CDS	ALIDE_RS03620	NC_014910.1	765821	766609	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-dependent oxidoreductase	complement(765821..766609)	Alicycliphilus denitrificans BC	
ALIDE_RS03625	CDS	ALIDE_RS03625	NC_014910.1	766606	767262	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome b/b6 domain-containing protein	complement(766606..767262)	Alicycliphilus denitrificans BC	
ALIDE_RS03630	CDS	ALIDE_RS03630	NC_014910.1	767358	768068	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	767358..768068	Alicycliphilus denitrificans BC	
ALIDE_RS03635	CDS	ALIDE_RS03635	NC_014910.1	768065	769546	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAMP domain-containing sensor histidine kinase	768065..769546	Alicycliphilus denitrificans BC	
ALIDE_RS03640	CDS	ALIDE_RS03640	NC_014910.1	769564	769911	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(769564..769911)	Alicycliphilus denitrificans BC	
ALIDE_RS23270	CDS	ALIDE_RS23270	NC_014910.1	770087	770893	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; VWA domain-containing protein	complement(770087..770893)	Alicycliphilus denitrificans BC	
ALIDE_RS03655	CDS	ALIDE_RS03655	NC_014910.1	771304	772746	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	771304..772746	Alicycliphilus denitrificans BC	
ALIDE_RS03660	CDS	ALIDE_RS03660	NC_014910.1	772970	773611	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; XrtA/PEP-CTERM system exopolysaccharide export protein	772970..773611	Alicycliphilus denitrificans BC	
ALIDE_RS03665	CDS	ALIDE_RS03665	NC_014910.1	773658	775220	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; XrtA system polysaccharide chain length determinant	773658..775220	Alicycliphilus denitrificans BC	
ALIDE_RS03670	CDS	ALIDE_RS03670	NC_014910.1	775229	776191	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; XrtA-associated tyrosine autokinase	775229..776191	Alicycliphilus denitrificans BC	
ALIDE_RS23275	CDS	ALIDE_RS23275	NC_014910.1	776213	777868	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03016 family PEP-CTERM system-associated outer membrane protein	776213..777868	Alicycliphilus denitrificans BC	
ALIDE_RS03675	CDS	ALIDE_RS03675	NC_014910.1	777872	778972	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; XrtA/PEP-CTERM system-associated ATPase	777872..778972	Alicycliphilus denitrificans BC	
ALIDE_RS03680	CDS	ALIDE_RS03680	NC_014910.1	778981	779847	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; XrtA system polysaccharide deacetylase	778981..779847	Alicycliphilus denitrificans BC	
ALIDE_RS03685	CDS	ALIDE_RS03685	NC_014910.1	779855	780901	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FemAB family XrtA/PEP-CTERM system-associated protein	779855..780901	Alicycliphilus denitrificans BC	
ALIDE_RS03690	CDS	ALIDE_RS03690	NC_014910.1	780915	782153	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03087 family PEP-CTERM/XrtA system glycosyltransferase	780915..782153	Alicycliphilus denitrificans BC	
ALIDE_RS03695	CDS	xrtA	NC_014910.1	782164	783732	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; exosortase A	782164..783732	Alicycliphilus denitrificans BC	
ALIDE_RS03700	CDS	ALIDE_RS03700	NC_014910.1	783735	785645	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; XrtA/PEP-CTERM system amidotransferase	783735..785645	Alicycliphilus denitrificans BC	
ALIDE_RS03705	CDS	ALIDE_RS03705	NC_014910.1	785638	786780	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03088 family PEP-CTERM/XrtA system glycosyltransferase	785638..786780	Alicycliphilus denitrificans BC	
ALIDE_RS03710	CDS	ALIDE_RS03710	NC_014910.1	786794	788011	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR04063 family PEP-CTERM/XrtA system glycosyltransferase	786794..788011	Alicycliphilus denitrificans BC	
ALIDE_RS03715	CDS	wecB	NC_014910.1	788008	789159	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	788008..789159	Alicycliphilus denitrificans BC	
ALIDE_RS03720	CDS	wecC	NC_014910.1	789149	790369	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetyl-D-mannosamine dehydrogenase	789149..790369	Alicycliphilus denitrificans BC	
ALIDE_RS03725	CDS	ALIDE_RS03725	NC_014910.1	790413	791618	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 4 protein	790413..791618	Alicycliphilus denitrificans BC	
ALIDE_RS24890	CDS	ALIDE_RS24890	NC_014910.1	791714	791845	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	791714..791845	Alicycliphilus denitrificans BC	
ALIDE_RS03730	CDS	ALIDE_RS03730	NC_014910.1	792011	793336	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative O-glycosylation ligase, exosortase A system-associated	792011..793336	Alicycliphilus denitrificans BC	
ALIDE_RS03735	CDS	ALIDE_RS03735	NC_014910.1	793333	794295	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; polysaccharide deacetylase family protein	793333..794295	Alicycliphilus denitrificans BC	
ALIDE_RS03740	CDS	ALIDE_RS03740	NC_014910.1	794292	795305	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; polysaccharide deacetylase family protein	794292..795305	Alicycliphilus denitrificans BC	
ALIDE_RS03745	CDS	ALIDE_RS03745	NC_014910.1	795317	796354	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	795317..796354	Alicycliphilus denitrificans BC	
ALIDE_RS03750	CDS	ALIDE_RS03750	NC_014910.1	796355	797302	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase	complement(796355..797302)	Alicycliphilus denitrificans BC	
ALIDE_RS03755	CDS	ALIDE_RS03755	NC_014910.1	797372	798820	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; oligosaccharide flippase family protein	complement(797372..798820)	Alicycliphilus denitrificans BC	
ALIDE_RS03760	CDS	tviB	NC_014910.1	798978	800255	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	798978..800255	Alicycliphilus denitrificans BC	
ALIDE_RS03765	CDS	ALIDE_RS03765	NC_014910.1	800258	801334	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent epimerase/dehydratase family protein	800258..801334	Alicycliphilus denitrificans BC	
ALIDE_RS23280	CDS	ALIDE_RS23280	NC_014910.1	801461	803365	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfatase-like hydrolase/transferase	complement(801461..803365)	Alicycliphilus denitrificans BC	
ALIDE_RS03770	CDS	ALIDE_RS03770	NC_014910.1	803665	805650	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(803665..805650)	Alicycliphilus denitrificans BC	
ALIDE_RS03775	CDS	ALIDE_RS03775	NC_014910.1	805607	805876	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	805607..805876	Alicycliphilus denitrificans BC	
ALIDE_RS03780	CDS	ALIDE_RS03780	NC_014910.1	806335	807327	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	806335..807327	Alicycliphilus denitrificans BC	
ALIDE_RS03785	CDS	ALIDE_RS03785	NC_014910.1	807433	808191	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4114 domain-containing protein	complement(807433..808191)	Alicycliphilus denitrificans BC	
ALIDE_RS03790	CDS	ALIDE_RS03790	NC_014910.1	808386	809228	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 1, exosortase A system-associated	complement(808386..809228)	Alicycliphilus denitrificans BC	
ALIDE_RS03795	CDS	ALIDE_RS03795	NC_014910.1	809225	810079	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 2, exosortase A system-associated	complement(809225..810079)	Alicycliphilus denitrificans BC	
ALIDE_RS03800	CDS	ALIDE_RS03800	NC_014910.1	810081	810341	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl carrier protein	complement(810081..810341)	Alicycliphilus denitrificans BC	
ALIDE_RS03805	CDS	ALIDE_RS03805	NC_014910.1	810425	812071	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA ligase (AMP-forming), exosortase A system-associated	810425..812071	Alicycliphilus denitrificans BC	
ALIDE_RS03810	CDS	ALIDE_RS03810	NC_014910.1	812058	813263	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxal-dependent decarboxylase, exosortase A system-associated	812058..813263	Alicycliphilus denitrificans BC	
ALIDE_RS03815	CDS	prsK	NC_014910.1	813266	815347	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; XrtA/PEP-CTERM system histidine kinase PrsK	813266..815347	Alicycliphilus denitrificans BC	
ALIDE_RS03820	CDS	prsR	NC_014910.1	815356	816717	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PEP-CTERM-box response regulator transcription factor	815356..816717	Alicycliphilus denitrificans BC	
ALIDE_RS03825	CDS	prsT	NC_014910.1	817007	819787	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; XrtA/PEP-CTERM system TPR-repeat protein PrsT	817007..819787	Alicycliphilus denitrificans BC	
ALIDE_RS03830	CDS	ALIDE_RS03830	NC_014910.1	819825	820616	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; serine protease	819825..820616	Alicycliphilus denitrificans BC	
ALIDE_RS03835	CDS	infA	NC_014910.1	820644	820913	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-1	complement(820644..820913)	Alicycliphilus denitrificans BC	
ALIDE_RS03840	CDS	alkB	NC_014910.1	821261	821914	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA oxidative demethylase AlkB	complement(821261..821914)	Alicycliphilus denitrificans BC	
ALIDE_RS03845	CDS	ALIDE_RS03845	NC_014910.1	822005	823513	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	822005..823513	Alicycliphilus denitrificans BC	
ALIDE_RS03850	CDS	ALIDE_RS03850	NC_014910.1	823610	824329	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase	823610..824329	Alicycliphilus denitrificans BC	
ALIDE_RS03855	CDS	ALIDE_RS03855	NC_014910.1	824323	825903	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(824323..825903)	Alicycliphilus denitrificans BC	
ALIDE_RS03860	CDS	ALIDE_RS03860	NC_014910.1	825915	826523	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M15 family metallopeptidase	complement(825915..826523)	Alicycliphilus denitrificans BC	
ALIDE_RS03865	CDS	ALIDE_RS03865	NC_014910.1	826699	827370	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DsbA family oxidoreductase	826699..827370	Alicycliphilus denitrificans BC	
ALIDE_RS03870	CDS	ALIDE_RS03870	NC_014910.1	827442	827900	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CreA family protein	complement(827442..827900)	Alicycliphilus denitrificans BC	
ALIDE_RS03875	CDS	cphA	NC_014910.1	827921	830512	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cyanophycin synthetase	complement(827921..830512)	Alicycliphilus denitrificans BC	
ALIDE_RS03880	CDS	cphA	NC_014910.1	830584	832764	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cyanophycin synthetase	complement(830584..832764)	Alicycliphilus denitrificans BC	
ALIDE_RS03885	CDS	ALIDE_RS03885	NC_014910.1	833014	835326	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	833014..835326	Alicycliphilus denitrificans BC	
ALIDE_RS03890	CDS	ALIDE_RS03890	NC_014910.1	835341	835829	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1854 domain-containing protein	835341..835829	Alicycliphilus denitrificans BC	
ALIDE_RS03895	CDS	ALIDE_RS03895	NC_014910.1	835970	836410	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	835970..836410	Alicycliphilus denitrificans BC	
ALIDE_RS03900	CDS	fusA	NC_014910.1	836534	838588	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor G	836534..838588	Alicycliphilus denitrificans BC	
ALIDE_RS03905	CDS	ALIDE_RS03905	NC_014910.1	838602	839534	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase	complement(838602..839534)	Alicycliphilus denitrificans BC	
ALIDE_RS03910	CDS	gspF	NC_014910.1	839539	840768	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system inner membrane protein GspF	complement(839539..840768)	Alicycliphilus denitrificans BC	
ALIDE_RS03915	CDS	ALIDE_RS03915	NC_014910.1	840823	841818	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LLM class flavin-dependent oxidoreductase	complement(840823..841818)	Alicycliphilus denitrificans BC	
ALIDE_RS03920	CDS	ALIDE_RS03920	NC_014910.1	842007	842534	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CZB domain-containing protein	842007..842534	Alicycliphilus denitrificans BC	
ALIDE_RS03925	CDS	ALIDE_RS03925	NC_014910.1	842544	843944	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATPase, T2SS/T4P/T4SS family	complement(842544..843944)	Alicycliphilus denitrificans BC	
ALIDE_RS03930	CDS	gspD	NC_014910.1	843955	846288	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system secretin GspD	complement(843955..846288)	Alicycliphilus denitrificans BC	
ALIDE_RS03935	CDS	gspN	NC_014910.1	846293	847108	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system protein N	complement(846293..847108)	Alicycliphilus denitrificans BC	
ALIDE_RS03940	CDS	gspM	NC_014910.1	847142	847651	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system protein GspM	complement(847142..847651)	Alicycliphilus denitrificans BC	
ALIDE_RS03945	CDS	gspL	NC_014910.1	847648	848880	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system protein GspL	complement(847648..848880)	Alicycliphilus denitrificans BC	
ALIDE_RS03950	CDS	gspK	NC_014910.1	848948	849925	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system minor pseudopilin GspK	complement(848948..849925)	Alicycliphilus denitrificans BC	
ALIDE_RS03955	CDS	ALIDE_RS03955	NC_014910.1	849922	850611	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; prepilin-type N-terminal cleavage/methylation domain-containing protein	complement(849922..850611)	Alicycliphilus denitrificans BC	
ALIDE_RS03960	CDS	gspI	NC_014910.1	850613	850978	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system minor pseudopilin GspI	complement(850613..850978)	Alicycliphilus denitrificans BC	
ALIDE_RS03965	CDS	ALIDE_RS03965	NC_014910.1	851247	851756	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; prepilin-type N-terminal cleavage/methylation domain-containing protein	complement(851247..851756)	Alicycliphilus denitrificans BC	
ALIDE_RS03970	CDS	gspG	NC_014910.1	851784	852191	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system major pseudopilin GspG	complement(851784..852191)	Alicycliphilus denitrificans BC	
ALIDE_RS03975	CDS	ALIDE_RS03975	NC_014910.1	852292	852738	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system protein N	852292..852738	Alicycliphilus denitrificans BC	
ALIDE_RS03980	CDS	ALIDE_RS03980	NC_014910.1	852739	853305	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine phosphatase family protein	complement(852739..853305)	Alicycliphilus denitrificans BC	
ALIDE_RS03985	CDS	ALIDE_RS03985	NC_014910.1	853302	854120	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylcobinamide-GDP ribazoletransferase	complement(853302..854120)	Alicycliphilus denitrificans BC	
ALIDE_RS03990	CDS	ilvA	NC_014910.1	854183	855748	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine ammonia-lyase, biosynthetic	complement(854183..855748)	Alicycliphilus denitrificans BC	
ALIDE_RS03995	CDS	ALIDE_RS03995	NC_014910.1	856030	856479	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; OsmC family protein	856030..856479	Alicycliphilus denitrificans BC	
ALIDE_RS04000	CDS	coq7	NC_014910.1	856490	857107	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	complement(856490..857107)	Alicycliphilus denitrificans BC	
ALIDE_RS04005	CDS	ALIDE_RS04005	NC_014910.1	857336	858376	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; porin	857336..858376	Alicycliphilus denitrificans BC	
ALIDE_RS04010	CDS	ALIDE_RS04010	NC_014910.1	858598	859809	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; porin	858598..859809	Alicycliphilus denitrificans BC	
ALIDE_RS04015	CDS	ALIDE_RS04015	NC_014910.1	860058	861041	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	860058..861041	Alicycliphilus denitrificans BC	
ALIDE_RS04020	CDS	ALIDE_RS04020	NC_014910.1	861043	862263	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; M20 aminoacylase family protein	861043..862263	Alicycliphilus denitrificans BC	
ALIDE_RS04025	CDS	ALIDE_RS04025	NC_014910.1	862341	863252	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	862341..863252	Alicycliphilus denitrificans BC	
ALIDE_RS04030	CDS	ALIDE_RS04030	NC_014910.1	863259	864233	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	863259..864233	Alicycliphilus denitrificans BC	
ALIDE_RS04035	CDS	ALIDE_RS04035	NC_014910.1	864230	865246	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dipeptide ABC transporter ATP-binding protein	864230..865246	Alicycliphilus denitrificans BC	
ALIDE_RS04040	CDS	ALIDE_RS04040	NC_014910.1	865289	865783	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YbhB/YbcL family Raf kinase inhibitor-like protein	865289..865783	Alicycliphilus denitrificans BC	
ALIDE_RS04045	CDS	ALIDE_RS04045	NC_014910.1	865835	866680	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SIS domain-containing protein	complement(865835..866680)	Alicycliphilus denitrificans BC	
ALIDE_RS04050	CDS	tal	NC_014910.1	866796	867746	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transaldolase	866796..867746	Alicycliphilus denitrificans BC	
ALIDE_RS04055	CDS	pgi	NC_014910.1	867743	869338	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate isomerase	867743..869338	Alicycliphilus denitrificans BC	
ALIDE_RS04060	CDS	groL	NC_014910.1	869461	871107	R	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperonin GroEL	complement(869461..871107)	Alicycliphilus denitrificans BC	
ALIDE_RS04065	CDS	groES	NC_014910.1	871205	871495	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; co-chaperone GroES	complement(871205..871495)	Alicycliphilus denitrificans BC	
ALIDE_RS04070	CDS	ALIDE_RS04070	NC_014910.1	871697	872725	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase	complement(871697..872725)	Alicycliphilus denitrificans BC	
ALIDE_RS04075	CDS	metK	NC_014910.1	872739	873920	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine adenosyltransferase	complement(872739..873920)	Alicycliphilus denitrificans BC	
ALIDE_RS04080	CDS	ALIDE_RS04080	NC_014910.1	874054	874908	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipid acyltransferase family protein	874054..874908	Alicycliphilus denitrificans BC	
ALIDE_RS04085	CDS	ALIDE_RS04085	NC_014910.1	874917	875786	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis acyltransferase	874917..875786	Alicycliphilus denitrificans BC	
ALIDE_RS04090	CDS	ALIDE_RS04090	NC_014910.1	875827	876729	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(875827..876729)	Alicycliphilus denitrificans BC	
ALIDE_RS04095	CDS	ALIDE_RS04095	NC_014910.1	876826	877806	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	876826..877806	Alicycliphilus denitrificans BC	
ALIDE_RS04100	CDS	ALIDE_RS04100	NC_014910.1	877821	878801	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	877821..878801	Alicycliphilus denitrificans BC	
ALIDE_RS04105	CDS	ALIDE_RS04105	NC_014910.1	878828	879889	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate/isopropylmalate family dehydrogenase	878828..879889	Alicycliphilus denitrificans BC	
ALIDE_RS04110	CDS	ALIDE_RS04110	NC_014910.1	879889	880701	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidohydrolase family protein	879889..880701	Alicycliphilus denitrificans BC	
ALIDE_RS04115	CDS	yihA	NC_014910.1	880689	881381	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome biogenesis GTP-binding protein YihA/YsxC	complement(880689..881381)	Alicycliphilus denitrificans BC	
ALIDE_RS04120	CDS	ALIDE_RS04120	NC_014910.1	881464	882102	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome	881464..882102	Alicycliphilus denitrificans BC	
ALIDE_RS04125	CDS	ALIDE_RS04125	NC_014910.1	882231	884429	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c biogenesis protein ResB	882231..884429	Alicycliphilus denitrificans BC	
ALIDE_RS04130	CDS	ccsB	NC_014910.1	884426	885760	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome biogenesis protein CcsB	884426..885760	Alicycliphilus denitrificans BC	
ALIDE_RS04135	CDS	msrP	NC_014910.1	885934	886932	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-methionine-sulfoxide reductase catalytic subunit MsrP	885934..886932	Alicycliphilus denitrificans BC	
ALIDE_RS04140	CDS	ALIDE_RS04140	NC_014910.1	886932	887573	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	886932..887573	Alicycliphilus denitrificans BC	
ALIDE_RS04145	CDS	ALIDE_RS04145	NC_014910.1	887659	888462	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MBL fold metallo-hydrolase	complement(887659..888462)	Alicycliphilus denitrificans BC	
ALIDE_RS04150	CDS	lysA	NC_014910.1	888531	889820	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate decarboxylase	complement(888531..889820)	Alicycliphilus denitrificans BC	
ALIDE_RS24700	CDS	ALIDE_RS24700	NC_014910.1	889817	890029	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein	complement(889817..890029)	Alicycliphilus denitrificans BC	
ALIDE_RS04155	CDS	cyaY	NC_014910.1	890042	890371	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; iron donor protein CyaY	890042..890371	Alicycliphilus denitrificans BC	
ALIDE_RS04160	CDS	ALIDE_RS04160	NC_014910.1	890378	892693	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 1A	complement(890378..892693)	Alicycliphilus denitrificans BC	
ALIDE_RS04165	CDS	ALIDE_RS04165	NC_014910.1	893011	894090	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pilus assembly protein PilM	893011..894090	Alicycliphilus denitrificans BC	
ALIDE_RS04170	CDS	ALIDE_RS04170	NC_014910.1	894087	894698	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PilN domain-containing protein	894087..894698	Alicycliphilus denitrificans BC	
ALIDE_RS04175	CDS	ALIDE_RS04175	NC_014910.1	894701	895378	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type 4a pilus biogenesis protein PilO	894701..895378	Alicycliphilus denitrificans BC	
ALIDE_RS04180	CDS	ALIDE_RS04180	NC_014910.1	895375	895932	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pilus assembly protein PilP	895375..895932	Alicycliphilus denitrificans BC	
ALIDE_RS04185	CDS	ALIDE_RS04185	NC_014910.1	895929	898070	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pilus secretin PilQ	895929..898070	Alicycliphilus denitrificans BC	
ALIDE_RS04190	CDS	ALIDE_RS04190	NC_014910.1	898092	899639	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Ig domain-containing protein	898092..899639	Alicycliphilus denitrificans BC	
ALIDE_RS04195	CDS	aroB	NC_014910.1	899763	900881	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-dehydroquinate synthase	899763..900881	Alicycliphilus denitrificans BC	
ALIDE_RS04200	CDS	ALIDE_RS04200	NC_014910.1	900939	902111	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyguanosinetriphosphate triphosphohydrolase	900939..902111	Alicycliphilus denitrificans BC	
ALIDE_RS04205	CDS	ALIDE_RS04205	NC_014910.1	902143	902763	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1415 domain-containing protein	902143..902763	Alicycliphilus denitrificans BC	
ALIDE_RS04210	CDS	ALIDE_RS04210	NC_014910.1	902760	903632	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SAM-dependent methyltransferase	902760..903632	Alicycliphilus denitrificans BC	
ALIDE_RS04215	CDS	ALIDE_RS04215	NC_014910.1	903748	905253	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA-acylating methylmalonate-semialdehyde dehydrogenase	complement(903748..905253)	Alicycliphilus denitrificans BC	
ALIDE_RS04220	CDS	ALIDE_RS04220	NC_014910.1	905268	906485	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(905268..906485)	Alicycliphilus denitrificans BC	
ALIDE_RS04225	CDS	ALIDE_RS04225	NC_014910.1	906619	907545	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	906619..907545	Alicycliphilus denitrificans BC	
ALIDE_RS04230	CDS	ALIDE_RS04230	NC_014910.1	907612	908322	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase	907612..908322	Alicycliphilus denitrificans BC	
ALIDE_RS04235	CDS	ALIDE_RS04235	NC_014910.1	908492	913225	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate synthase-related protein	908492..913225	Alicycliphilus denitrificans BC	
ALIDE_RS04240	CDS	ALIDE_RS04240	NC_014910.1	913266	914744	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate synthase subunit beta	913266..914744	Alicycliphilus denitrificans BC	
ALIDE_RS04245	CDS	ALIDE_RS04245	NC_014910.1	914949	915746	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein	914949..915746	Alicycliphilus denitrificans BC	
ALIDE_RS04250	CDS	ALIDE_RS04250	NC_014910.1	915811	916464	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease	915811..916464	Alicycliphilus denitrificans BC	
ALIDE_RS04255	CDS	ALIDE_RS04255	NC_014910.1	916445	917224	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein	916445..917224	Alicycliphilus denitrificans BC	
ALIDE_RS04260	CDS	ALIDE_RS04260	NC_014910.1	917248	918552	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3422 domain-containing protein	917248..918552	Alicycliphilus denitrificans BC	
ALIDE_RS04265	CDS	speE	NC_014910.1	918654	919613	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; polyamine aminopropyltransferase	complement(918654..919613)	Alicycliphilus denitrificans BC	
ALIDE_RS04270	CDS	speD	NC_014910.1	919613	920023	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylmethionine decarboxylase	complement(919613..920023)	Alicycliphilus denitrificans BC	
ALIDE_RS04275	CDS	ALIDE_RS04275	NC_014910.1	920390	921238	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	920390..921238	Alicycliphilus denitrificans BC	
ALIDE_RS04280	CDS	mlaE	NC_014910.1	921235	922017	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid asymmetry maintenance ABC transporter permease subunit MlaE	921235..922017	Alicycliphilus denitrificans BC	
ALIDE_RS04285	CDS	mlaD	NC_014910.1	922052	922540	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipid asymmetry maintenance protein MlaD	922052..922540	Alicycliphilus denitrificans BC	
ALIDE_RS04290	CDS	ALIDE_RS04290	NC_014910.1	922537	923277	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VacJ family lipoprotein	922537..923277	Alicycliphilus denitrificans BC	
ALIDE_RS04295	CDS	ALIDE_RS04295	NC_014910.1	923395	924057	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	923395..924057	Alicycliphilus denitrificans BC	
ALIDE_RS04300	CDS	ALIDE_RS04300	NC_014910.1	924075	924347	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; STAS domain-containing protein	924075..924347	Alicycliphilus denitrificans BC	
ALIDE_RS04305	CDS	ALIDE_RS04305	NC_014910.1	924411	925706	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase	924411..925706	Alicycliphilus denitrificans BC	
ALIDE_RS04310	CDS	ALIDE_RS04310	NC_014910.1	925788	926708	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	925788..926708	Alicycliphilus denitrificans BC	
ALIDE_RS04315	CDS	ALIDE_RS04315	NC_014910.1	926705	927460	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	926705..927460	Alicycliphilus denitrificans BC	
ALIDE_RS04320	CDS	ALIDE_RS04320	NC_014910.1	927474	927722	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; BolA family protein	927474..927722	Alicycliphilus denitrificans BC	
ALIDE_RS04325	CDS	murA	NC_014910.1	927747	929021	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine 1-carboxyvinyltransferase	927747..929021	Alicycliphilus denitrificans BC	
ALIDE_RS04330	CDS	hisG	NC_014910.1	929018	929668	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP phosphoribosyltransferase	929018..929668	Alicycliphilus denitrificans BC	
ALIDE_RS04335	CDS	hisD	NC_014910.1	929673	930989	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidinol dehydrogenase	929673..930989	Alicycliphilus denitrificans BC	
ALIDE_RS04340	CDS	ALIDE_RS04340	NC_014910.1	931108	931386	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF6364 family protein	931108..931386	Alicycliphilus denitrificans BC	
ALIDE_RS04345	CDS	ALIDE_RS04345	NC_014910.1	931383	931835	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PIN domain-containing protein	931383..931835	Alicycliphilus denitrificans BC	
ALIDE_RS04350	CDS	ALIDE_RS04350	NC_014910.1	931853	932971	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	931853..932971	Alicycliphilus denitrificans BC	
ALIDE_RS04355	CDS	hisB	NC_014910.1	932968	933600	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazoleglycerol-phosphate dehydratase HisB	932968..933600	Alicycliphilus denitrificans BC	
ALIDE_RS04360	CDS	hisH	NC_014910.1	933651	934319	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazole glycerol phosphate synthase subunit HisH	933651..934319	Alicycliphilus denitrificans BC	
ALIDE_RS04365	CDS	hisA	NC_014910.1	934372	935115	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	934372..935115	Alicycliphilus denitrificans BC	
ALIDE_RS04370	CDS	ALIDE_RS04370	NC_014910.1	935122	936318	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; spherulation-specific family 4 protein	complement(935122..936318)	Alicycliphilus denitrificans BC	
ALIDE_RS04375	CDS	pelG	NC_014910.1	936386	937759	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; exopolysaccharide Pel transporter PelG	complement(936386..937759)	Alicycliphilus denitrificans BC	
ALIDE_RS04380	CDS	pelF	NC_014910.1	937759	939291	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GT4 family glycosyltransferase PelF	complement(937759..939291)	Alicycliphilus denitrificans BC	
ALIDE_RS04385	CDS	ALIDE_RS04385	NC_014910.1	939288	940289	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein	complement(939288..940289)	Alicycliphilus denitrificans BC	
ALIDE_RS04390	CDS	ALIDE_RS04390	NC_014910.1	940282	941676	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PelD GGDEF domain-containing protein	complement(940282..941676)	Alicycliphilus denitrificans BC	
ALIDE_RS04395	CDS	ALIDE_RS04395	NC_014910.1	941684	942238	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(941684..942238)	Alicycliphilus denitrificans BC	
ALIDE_RS04400	CDS	ALIDE_RS04400	NC_014910.1	942260	946150	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tetratricopeptide repeat protein	complement(942260..946150)	Alicycliphilus denitrificans BC	
ALIDE_RS04405	CDS	ALIDE_RS04405	NC_014910.1	946110	948941	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; endo alpha-1,4 polygalactosaminidase	complement(946110..948941)	Alicycliphilus denitrificans BC	
ALIDE_RS04410	CDS	galE	NC_014910.1	949114	950130	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-glucose 4-epimerase GalE	949114..950130	Alicycliphilus denitrificans BC	
ALIDE_RS04415	CDS	hisF	NC_014910.1	950171	950950	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazole glycerol phosphate synthase subunit HisF	950171..950950	Alicycliphilus denitrificans BC	
ALIDE_RS04420	CDS	hisI	NC_014910.1	951057	951446	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosyl-AMP cyclohydrolase	951057..951446	Alicycliphilus denitrificans BC	
ALIDE_RS04425	CDS	ALIDE_RS04425	NC_014910.1	951451	951828	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosyl-ATP diphosphatase	951451..951828	Alicycliphilus denitrificans BC	
ALIDE_RS04430	CDS	ALIDE_RS04430	NC_014910.1	951825	952211	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein	951825..952211	Alicycliphilus denitrificans BC	
ALIDE_RS04435	CDS	ALIDE_RS04435	NC_014910.1	952204	953232	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; patatin-like phospholipase family protein	952204..953232	Alicycliphilus denitrificans BC	
ALIDE_RS04440	CDS	ALIDE_RS04440	NC_014910.1	953271	953627	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine triad nucleotide-binding protein	953271..953627	Alicycliphilus denitrificans BC	
ALIDE_RS04445	CDS	tatA	NC_014910.1	953728	953976	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Sec-independent protein translocase subunit TatA	953728..953976	Alicycliphilus denitrificans BC	
ALIDE_RS04450	CDS	tatB	NC_014910.1	954002	954481	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Sec-independent protein translocase protein TatB	954002..954481	Alicycliphilus denitrificans BC	
ALIDE_RS04455	CDS	tatC	NC_014910.1	954547	955335	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; twin-arginine translocase subunit TatC	954547..955335	Alicycliphilus denitrificans BC	
ALIDE_RS04460	CDS	ALIDE_RS04460	NC_014910.1	955409	956548	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Do family serine endopeptidase	complement(955409..956548)	Alicycliphilus denitrificans BC	
ALIDE_RS04465	CDS	ALIDE_RS04465	NC_014910.1	956639	957391	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Nif3-like dinuclear metal center hexameric protein	956639..957391	Alicycliphilus denitrificans BC	
ALIDE_RS04470	CDS	pdxA	NC_014910.1	957454	958506	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA	957454..958506	Alicycliphilus denitrificans BC	
ALIDE_RS04475	CDS	mscL	NC_014910.1	958573	959001	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; large conductance mechanosensitive channel protein MscL	complement(958573..959001)	Alicycliphilus denitrificans BC	
ALIDE_RS04480	CDS	petA	NC_014910.1	959127	959726	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinol-cytochrome c reductase iron-sulfur subunit	959127..959726	Alicycliphilus denitrificans BC	
ALIDE_RS04485	CDS	ALIDE_RS04485	NC_014910.1	959742	961163	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome bc complex cytochrome b subunit	959742..961163	Alicycliphilus denitrificans BC	
ALIDE_RS04490	CDS	ALIDE_RS04490	NC_014910.1	961180	961935	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c1	961180..961935	Alicycliphilus denitrificans BC	
ALIDE_RS04495	CDS	ALIDE_RS04495	NC_014910.1	962034	962645	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase N-terminal domain-containing protein	962034..962645	Alicycliphilus denitrificans BC	
ALIDE_RS04500	CDS	ALIDE_RS04500	NC_014910.1	962678	963202	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ClpXP protease specificity-enhancing factor	962678..963202	Alicycliphilus denitrificans BC	
ALIDE_RS04510	CDS	ALIDE_RS04510	NC_014910.1	963385	963684	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(963385..963684)	Alicycliphilus denitrificans BC	
ALIDE_RS04515	CDS	secA	NC_014910.1	963926	966685	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecA	963926..966685	Alicycliphilus denitrificans BC	
ALIDE_RS04520	CDS	argJ	NC_014910.1	966761	967990	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	966761..967990	Alicycliphilus denitrificans BC	
ALIDE_RS04525	CDS	ALIDE_RS04525	NC_014910.1	968045	968917	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	968045..968917	Alicycliphilus denitrificans BC	
ALIDE_RS04530	CDS	ALIDE_RS04530	NC_014910.1	968914	969339	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX domain-containing protein	968914..969339	Alicycliphilus denitrificans BC	
ALIDE_RS04535	CDS	ALIDE_RS04535	NC_014910.1	969402	969608	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase inhibitor YacG	complement(969402..969608)	Alicycliphilus denitrificans BC	
ALIDE_RS04540	CDS	zapD	NC_014910.1	969610	970365	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZapD	complement(969610..970365)	Alicycliphilus denitrificans BC	
ALIDE_RS04545	CDS	coaE	NC_014910.1	970448	971062	R	Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dephospho-CoA kinase	complement(970448..971062)	Alicycliphilus denitrificans BC	
ALIDE_RS04550	CDS	ALIDE_RS04550	NC_014910.1	971083	971961	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; A24 family peptidase	complement(971083..971961)	Alicycliphilus denitrificans BC	
ALIDE_RS04555	CDS	ALIDE_RS04555	NC_014910.1	971961	973178	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system F family protein	complement(971961..973178)	Alicycliphilus denitrificans BC	
ALIDE_RS04560	CDS	pilB	NC_014910.1	973200	974939	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV-A pilus assembly ATPase PilB	complement(973200..974939)	Alicycliphilus denitrificans BC	
ALIDE_RS04565	CDS	ALIDE_RS04565	NC_014910.1	975890	977584	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	975890..977584	Alicycliphilus denitrificans BC	
ALIDE_RS04570	CDS	ALIDE_RS04570	NC_014910.1	977965	978954	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(977965..978954)	Alicycliphilus denitrificans BC	
ALIDE_RS04575	CDS	ALIDE_RS04575	NC_014910.1	979080	980314	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	complement(join(979080..980026,980026..980314))	Alicycliphilus denitrificans BC	
ALIDE_RS23980	CDS	ALIDE_RS23980	NC_014910.1	980568	980915	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; helix-turn-helix domain-containing protein	complement(980568..980915)	Alicycliphilus denitrificans BC	
ALIDE_RS04585	CDS	ALIDE_RS04585	NC_014910.1	981016	982605	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific integrase	complement(981016..982605)	Alicycliphilus denitrificans BC	
ALIDE_RS04595	CDS	ALIDE_RS04595	NC_014910.1	982877	983860	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; polyprenyl synthetase family protein	complement(982877..983860)	Alicycliphilus denitrificans BC	
ALIDE_RS04600	CDS	rplU	NC_014910.1	984033	984344	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L21	984033..984344	Alicycliphilus denitrificans BC	
ALIDE_RS04605	CDS	rpmA	NC_014910.1	984360	984617	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L27	984360..984617	Alicycliphilus denitrificans BC	
ALIDE_RS04610	CDS	cgtA	NC_014910.1	984743	985816	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Obg family GTPase CgtA	984743..985816	Alicycliphilus denitrificans BC	
ALIDE_RS04615	CDS	proB	NC_014910.1	985881	987020	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate 5-kinase	985881..987020	Alicycliphilus denitrificans BC	
ALIDE_RS04620	CDS	ALIDE_RS04620	NC_014910.1	987044	987718	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA pyrophosphohydrolase	complement(987044..987718)	Alicycliphilus denitrificans BC	
ALIDE_RS04625	CDS	ALIDE_RS04625	NC_014910.1	987820	989565	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; proline--tRNA ligase	987820..989565	Alicycliphilus denitrificans BC	
ALIDE_RS04630	CDS	ALIDE_RS04630	NC_014910.1	989562	990206	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic transglycosylase domain-containing protein	989562..990206	Alicycliphilus denitrificans BC	
ALIDE_RS04635	CDS	ALIDE_RS04635	NC_014910.1	990182	991516	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hemolysin family protein	complement(990182..991516)	Alicycliphilus denitrificans BC	
ALIDE_RS04640	CDS	ALIDE_RS04640	NC_014910.1	991560	992567	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AAA family ATPase	complement(991560..992567)	Alicycliphilus denitrificans BC	
ALIDE_RS04645	CDS	grxD	NC_014910.1	992708	993040	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Grx4 family monothiol glutaredoxin	complement(992708..993040)	Alicycliphilus denitrificans BC	
ALIDE_RS04650	CDS	prmC	NC_014910.1	993097	993942	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor N(5)-glutamine methyltransferase	complement(993097..993942)	Alicycliphilus denitrificans BC	
ALIDE_RS04655	CDS	prfA	NC_014910.1	993985	995067	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 1	complement(993985..995067)	Alicycliphilus denitrificans BC	
ALIDE_RS04660	CDS	hemA	NC_014910.1	995168	996481	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamyl-tRNA reductase	complement(995168..996481)	Alicycliphilus denitrificans BC	
ALIDE_RS04665	CDS	ALIDE_RS04665	NC_014910.1	996556	996831	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	996556..996831	Alicycliphilus denitrificans BC	
ALIDE_RS04670	CDS	ALIDE_RS04670	NC_014910.1	996948	997841	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(996948..997841)	Alicycliphilus denitrificans BC	
ALIDE_RS04675	CDS	ALIDE_RS04675	NC_014910.1	997967	998950	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein BugE	997967..998950	Alicycliphilus denitrificans BC	
ALIDE_RS04680	CDS	ALIDE_RS04680	NC_014910.1	998950	999852	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; N-formylglutamate amidohydrolase	998950..999852	Alicycliphilus denitrificans BC	
ALIDE_RS04685	CDS	ALIDE_RS04685	NC_014910.1	999896	1002328	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3772 domain-containing protein	complement(999896..1002328)	Alicycliphilus denitrificans BC	
ALIDE_RS04690	CDS	ugpQ	NC_014910.1	1002357	1003106	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerophosphodiester phosphodiesterase	complement(1002357..1003106)	Alicycliphilus denitrificans BC	
ALIDE_RS04695	CDS	ugpC	NC_014910.1	1003113	1004120	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	complement(1003113..1004120)	Alicycliphilus denitrificans BC	
ALIDE_RS04700	CDS	ugpE	NC_014910.1	1004181	1005029	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate ABC transporter permease UgpE	complement(1004181..1005029)	Alicycliphilus denitrificans BC	
ALIDE_RS04705	CDS	ugpA	NC_014910.1	1005037	1005918	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate ABC transporter permease UgpA	complement(1005037..1005918)	Alicycliphilus denitrificans BC	
ALIDE_RS04710	CDS	ugpB	NC_014910.1	1005989	1007302	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	complement(1005989..1007302)	Alicycliphilus denitrificans BC	
ALIDE_RS04715	CDS	serA	NC_014910.1	1007634	1008863	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate dehydrogenase	1007634..1008863	Alicycliphilus denitrificans BC	
ALIDE_RS04720	CDS	ALIDE_RS04720	NC_014910.1	1008985	1012905	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3683 domain-containing protein	1008985..1012905	Alicycliphilus denitrificans BC	
ALIDE_RS04725	CDS	ALIDE_RS04725	NC_014910.1	1012902	1013354	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HIT family protein	1012902..1013354	Alicycliphilus denitrificans BC	
ALIDE_RS04730	CDS	ALIDE_RS04730	NC_014910.1	1013431	1013850	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF971 domain-containing protein	1013431..1013850	Alicycliphilus denitrificans BC	
ALIDE_RS04735	CDS	ubiE	NC_014910.1	1013928	1014659	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	1013928..1014659	Alicycliphilus denitrificans BC	
ALIDE_RS04740	CDS	ALIDE_RS04740	NC_014910.1	1014698	1015699	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Tim44-like domain-containing protein	1014698..1015699	Alicycliphilus denitrificans BC	
ALIDE_RS04745	CDS	ALIDE_RS04745	NC_014910.1	1015774	1016334	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1015774..1016334	Alicycliphilus denitrificans BC	
ALIDE_RS04750	CDS	ubiB	NC_014910.1	1016331	1017896	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinone biosynthesis regulatory protein kinase UbiB	1016331..1017896	Alicycliphilus denitrificans BC	
ALIDE_RS04755	CDS	ALIDE_RS04755	NC_014910.1	1017948	1019399	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:solute symporter family protein	1017948..1019399	Alicycliphilus denitrificans BC	
ALIDE_RS23290	CDS	ALIDE_RS23290	NC_014910.1	1019462	1019743	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FmdB family zinc ribbon protein	1019462..1019743	Alicycliphilus denitrificans BC	
ALIDE_RS04765	CDS	ALIDE_RS04765	NC_014910.1	1019757	1020380	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF502 domain-containing protein	1019757..1020380	Alicycliphilus denitrificans BC	
ALIDE_RS04770	CDS	aspS	NC_014910.1	1020481	1022280	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate--tRNA ligase	1020481..1022280	Alicycliphilus denitrificans BC	
ALIDE_RS04775	CDS	nudB	NC_014910.1	1022342	1022788	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin triphosphate diphosphatase	1022342..1022788	Alicycliphilus denitrificans BC	
ALIDE_RS04780	CDS	ALIDE_RS04780	NC_014910.1	1022791	1023552	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease/exonuclease/phosphatase family protein	1022791..1023552	Alicycliphilus denitrificans BC	
ALIDE_RS04785	CDS	clsB	NC_014910.1	1023695	1024924	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cardiolipin synthase ClsB	1023695..1024924	Alicycliphilus denitrificans BC	
ALIDE_RS04790	CDS	folE	NC_014910.1	1025029	1025754	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP cyclohydrolase I	1025029..1025754	Alicycliphilus denitrificans BC	
ALIDE_RS04795	CDS	ALIDE_RS04795	NC_014910.1	1025756	1026178	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; BLUF domain-containing protein	1025756..1026178	Alicycliphilus denitrificans BC	
ALIDE_RS04800	CDS	ALIDE_RS04800	NC_014910.1	1026400	1027281	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	1026400..1027281	Alicycliphilus denitrificans BC	
ALIDE_RS04805	CDS	ALIDE_RS04805	NC_014910.1	1027311	1029131	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase	1027311..1029131	Alicycliphilus denitrificans BC	
ALIDE_RS04810	CDS	ALIDE_RS04810	NC_014910.1	1029128	1029757	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	1029128..1029757	Alicycliphilus denitrificans BC	
ALIDE_RS04815	CDS	ALIDE_RS04815	NC_014910.1	1029866	1030861	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome	complement(1029866..1030861)	Alicycliphilus denitrificans BC	
ALIDE_RS04820	CDS	ALIDE_RS04820	NC_014910.1	1031012	1031869	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF429 domain-containing protein	1031012..1031869	Alicycliphilus denitrificans BC	
ALIDE_RS04825	CDS	ALIDE_RS04825	NC_014910.1	1032021	1032632	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1032021..1032632)	Alicycliphilus denitrificans BC	
ALIDE_RS04830	CDS	ALIDE_RS04830	NC_014910.1	1032732	1033388	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysE family translocator	1032732..1033388	Alicycliphilus denitrificans BC	
ALIDE_RS04835	CDS	ALIDE_RS04835	NC_014910.1	1033449	1034855	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidase	complement(1033449..1034855)	Alicycliphilus denitrificans BC	
ALIDE_RS04840	CDS	ALIDE_RS04840	NC_014910.1	1034852	1036342	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(1034852..1036342)	Alicycliphilus denitrificans BC	
ALIDE_RS04845	CDS	ALIDE_RS04845	NC_014910.1	1036448	1037314	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding cassette domain-containing protein	complement(1036448..1037314)	Alicycliphilus denitrificans BC	
ALIDE_RS04850	CDS	ALIDE_RS04850	NC_014910.1	1037311	1038285	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(1037311..1038285)	Alicycliphilus denitrificans BC	
ALIDE_RS04855	CDS	ALIDE_RS04855	NC_014910.1	1038559	1039422	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	complement(1038559..1039422)	Alicycliphilus denitrificans BC	
ALIDE_RS04860	CDS	ALIDE_RS04860	NC_014910.1	1039419	1040381	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	complement(1039419..1040381)	Alicycliphilus denitrificans BC	
ALIDE_RS04865	CDS	ALIDE_RS04865	NC_014910.1	1040526	1040783	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YfhL family 4Fe-4S dicluster ferredoxin	1040526..1040783	Alicycliphilus denitrificans BC	
ALIDE_RS04870	CDS	pth	NC_014910.1	1040845	1041474	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoacyl-tRNA hydrolase	complement(1040845..1041474)	Alicycliphilus denitrificans BC	
ALIDE_RS04875	CDS	ALIDE_RS04875	NC_014910.1	1041584	1042210	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L25/general stress protein Ctc	complement(1041584..1042210)	Alicycliphilus denitrificans BC	
ALIDE_RS04880	CDS	ALIDE_RS04880	NC_014910.1	1042312	1043271	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose-phosphate pyrophosphokinase	complement(1042312..1043271)	Alicycliphilus denitrificans BC	
ALIDE_RS04890	CDS	ispE	NC_014910.1	1043491	1044357	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	complement(1043491..1044357)	Alicycliphilus denitrificans BC	
ALIDE_RS04895	CDS	ALIDE_RS04895	NC_014910.1	1044362	1044859	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein LolB	complement(1044362..1044859)	Alicycliphilus denitrificans BC	
ALIDE_RS04900	CDS	ALIDE_RS04900	NC_014910.1	1044856	1046637	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tetratricopeptide repeat protein	complement(1044856..1046637)	Alicycliphilus denitrificans BC	
ALIDE_RS04905	CDS	mutM	NC_014910.1	1046667	1047482	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	1046667..1047482	Alicycliphilus denitrificans BC	
ALIDE_RS04910	CDS	ALIDE_RS04910	NC_014910.1	1047552	1049537	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dynamin family protein	1047552..1049537	Alicycliphilus denitrificans BC	
ALIDE_RS04915	CDS	mutY	NC_014910.1	1049534	1050592	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; A/G-specific adenine glycosylase	1049534..1050592	Alicycliphilus denitrificans BC	
ALIDE_RS04920	CDS	rapZ	NC_014910.1	1050706	1051569	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase adapter RapZ	complement(1050706..1051569)	Alicycliphilus denitrificans BC	
ALIDE_RS04925	CDS	recN	NC_014910.1	1051575	1053248	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RecN	complement(1051575..1053248)	Alicycliphilus denitrificans BC	
ALIDE_RS04930	CDS	ALIDE_RS04930	NC_014910.1	1053251	1054147	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD kinase	complement(1053251..1054147)	Alicycliphilus denitrificans BC	
ALIDE_RS04935	CDS	hrcA	NC_014910.1	1054176	1055180	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heat-inducible transcriptional repressor HrcA	1054176..1055180	Alicycliphilus denitrificans BC	
ALIDE_RS04940	CDS	ALIDE_RS04940	NC_014910.1	1055520	1056194	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RraA family protein	1055520..1056194	Alicycliphilus denitrificans BC	
ALIDE_RS04945	CDS	ALIDE_RS04945	NC_014910.1	1056191	1057147	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-2-hydroxyacid dehydrogenase	1056191..1057147	Alicycliphilus denitrificans BC	
ALIDE_RS04950	CDS	ALIDE_RS04950	NC_014910.1	1057210	1058112	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(1057210..1058112)	Alicycliphilus denitrificans BC	
ALIDE_RS04955	CDS	ALIDE_RS04955	NC_014910.1	1058264	1059484	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxal phosphate-dependent aminotransferase	1058264..1059484	Alicycliphilus denitrificans BC	
ALIDE_RS04960	CDS	ALIDE_RS04960	NC_014910.1	1059649	1060347	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease	1059649..1060347	Alicycliphilus denitrificans BC	
ALIDE_RS04965	CDS	ALIDE_RS04965	NC_014910.1	1060350	1061096	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease	1060350..1061096	Alicycliphilus denitrificans BC	
ALIDE_RS04970	CDS	ALIDE_RS04970	NC_014910.1	1061149	1061877	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein	1061149..1061877	Alicycliphilus denitrificans BC	
ALIDE_RS04975	CDS	ALIDE_RS04975	NC_014910.1	1061917	1062750	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	1061917..1062750	Alicycliphilus denitrificans BC	
ALIDE_RS04980	CDS	ALIDE_RS04980	NC_014910.1	1062862	1063722	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter substrate-binding domain-containing protein	1062862..1063722	Alicycliphilus denitrificans BC	
ALIDE_RS04985	CDS	ALIDE_RS04985	NC_014910.1	1063763	1064500	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate/glutamate racemase family protein	1063763..1064500	Alicycliphilus denitrificans BC	
ALIDE_RS23985	CDS	ALIDE_RS23985	NC_014910.1	1064520	1064936	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; biotin carboxyl carrier protein of acetyl-CoA carboxylase	1064520..1064936	Alicycliphilus denitrificans BC	
ALIDE_RS04995	CDS	pxpB	NC_014910.1	1064933	1065616	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-oxoprolinase subunit PxpB	1064933..1065616	Alicycliphilus denitrificans BC	
ALIDE_RS05000	CDS	ALIDE_RS05000	NC_014910.1	1065613	1066590	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin-dependent carboxyltransferase family protein	1065613..1066590	Alicycliphilus denitrificans BC	
ALIDE_RS05005	CDS	ALIDE_RS05005	NC_014910.1	1066603	1067367	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-oxoprolinase subunit PxpA	1066603..1067367	Alicycliphilus denitrificans BC	
ALIDE_RS05010	CDS	ALIDE_RS05010	NC_014910.1	1067383	1067856	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin/lipoyl-containing protein	1067383..1067856	Alicycliphilus denitrificans BC	
ALIDE_RS05015	CDS	accC	NC_014910.1	1067860	1069203	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxylase subunit	1067860..1069203	Alicycliphilus denitrificans BC	
ALIDE_RS05020	CDS	ALIDE_RS05020	NC_014910.1	1069804	1070856	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SPOR domain-containing protein	1069804..1070856	Alicycliphilus denitrificans BC	
ALIDE_RS05025	CDS	ALIDE_RS05025	NC_014910.1	1070930	1071271	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; I78 family peptidase inhibitor	1070930..1071271	Alicycliphilus denitrificans BC	
ALIDE_RS05030	CDS	hemW	NC_014910.1	1071288	1072523	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; radical SAM family heme chaperone HemW	complement(1071288..1072523)	Alicycliphilus denitrificans BC	
ALIDE_RS05035	CDS	rdgB	NC_014910.1	1072615	1073232	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	complement(1072615..1073232)	Alicycliphilus denitrificans BC	
ALIDE_RS05040	CDS	rph	NC_014910.1	1073278	1074015	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease PH	complement(1073278..1074015)	Alicycliphilus denitrificans BC	
ALIDE_RS05045	CDS	ALIDE_RS05045	NC_014910.1	1074083	1074985	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein phosphatase 2C domain-containing protein	complement(1074083..1074985)	Alicycliphilus denitrificans BC	
ALIDE_RS05050	CDS	ALIDE_RS05050	NC_014910.1	1074982	1075998	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine-protein kinase	complement(1074982..1075998)	Alicycliphilus denitrificans BC	
ALIDE_RS05055	CDS	ALIDE_RS05055	NC_014910.1	1076079	1076987	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YicC/YloC family endoribonuclease	1076079..1076987	Alicycliphilus denitrificans BC	
ALIDE_RS05060	CDS	ALIDE_RS05060	NC_014910.1	1077019	1080456	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF6519 domain-containing protein	complement(1077019..1080456)	Alicycliphilus denitrificans BC	
ALIDE_RS05065	CDS	ALIDE_RS05065	NC_014910.1	1080477	1082774	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1080477..1082774)	Alicycliphilus denitrificans BC	
ALIDE_RS05070	CDS	ALIDE_RS05070	NC_014910.1	1082771	1085686	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1082771..1085686)	Alicycliphilus denitrificans BC	
ALIDE_RS05075	CDS	ALIDE_RS05075	NC_014910.1	1085683	1088175	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative baseplate assembly protein	complement(1085683..1088175)	Alicycliphilus denitrificans BC	
ALIDE_RS05080	CDS	ALIDE_RS05080	NC_014910.1	1088172	1088540	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GPW/gp25 family protein	complement(1088172..1088540)	Alicycliphilus denitrificans BC	
ALIDE_RS05085	CDS	ALIDE_RS05085	NC_014910.1	1088544	1088864	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1088544..1088864)	Alicycliphilus denitrificans BC	
ALIDE_RS05090	CDS	ALIDE_RS05090	NC_014910.1	1088875	1089384	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage baseplate assembly protein V	complement(1088875..1089384)	Alicycliphilus denitrificans BC	
ALIDE_RS05095	CDS	ALIDE_RS05095	NC_014910.1	1089396	1090538	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1089396..1090538)	Alicycliphilus denitrificans BC	
ALIDE_RS05100	CDS	ALIDE_RS05100	NC_014910.1	1090541	1090903	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1090541..1090903)	Alicycliphilus denitrificans BC	
ALIDE_RS05105	CDS	ALIDE_RS05105	NC_014910.1	1090906	1091562	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1090906..1091562)	Alicycliphilus denitrificans BC	
ALIDE_RS05110	CDS	ALIDE_RS05110	NC_014910.1	1091579	1092934	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4157 domain-containing protein	complement(1091579..1092934)	Alicycliphilus denitrificans BC	
ALIDE_RS05115	CDS	ALIDE_RS05115	NC_014910.1	1093110	1093376	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1093110..1093376)	Alicycliphilus denitrificans BC	
ALIDE_RS05120	CDS	ALIDE_RS05120	NC_014910.1	1093373	1095898	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4157 domain-containing protein	complement(1093373..1095898)	Alicycliphilus denitrificans BC	
ALIDE_RS05125	CDS	ALIDE_RS05125	NC_014910.1	1095895	1097835	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	complement(1095895..1097835)	Alicycliphilus denitrificans BC	
ALIDE_RS05130	CDS	ALIDE_RS05130	NC_014910.1	1097832	1099169	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4255 domain-containing protein	complement(1097832..1099169)	Alicycliphilus denitrificans BC	
ALIDE_RS23295	CDS	ALIDE_RS23295	NC_014910.1	1099166	1099906	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1099166..1099906)	Alicycliphilus denitrificans BC	
ALIDE_RS05135	CDS	ALIDE_RS05135	NC_014910.1	1099903	1100622	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1099903..1100622)	Alicycliphilus denitrificans BC	
ALIDE_RS05140	CDS	ALIDE_RS05140	NC_014910.1	1100639	1101163	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail protein	complement(1100639..1101163)	Alicycliphilus denitrificans BC	
ALIDE_RS05145	CDS	ALIDE_RS05145	NC_014910.1	1101179	1103071	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail sheath subtilisin-like domain-containing protein	complement(1101179..1103071)	Alicycliphilus denitrificans BC	
ALIDE_RS05150	CDS	gmk	NC_014910.1	1103463	1104083	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; guanylate kinase	1103463..1104083	Alicycliphilus denitrificans BC	
ALIDE_RS05155	CDS	rpoZ	NC_014910.1	1104103	1104306	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit omega	1104103..1104306	Alicycliphilus denitrificans BC	
ALIDE_RS05160	CDS	ALIDE_RS05160	NC_014910.1	1104407	1106671	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	1104407..1106671	Alicycliphilus denitrificans BC	
ALIDE_RS05165	CDS	greB	NC_014910.1	1106678	1107244	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription elongation factor GreB	complement(1106678..1107244)	Alicycliphilus denitrificans BC	
ALIDE_RS05175	CDS	ALIDE_RS05175	NC_014910.1	1107573	1107851	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1107573..1107851)	Alicycliphilus denitrificans BC	
ALIDE_RS05180	CDS	rpsO	NC_014910.1	1108066	1108332	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S15	1108066..1108332	Alicycliphilus denitrificans BC	
ALIDE_RS05185	CDS	pnp	NC_014910.1	1108563	1110758	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; polyribonucleotide nucleotidyltransferase	1108563..1110758	Alicycliphilus denitrificans BC	
ALIDE_RS05190	CDS	ALIDE_RS05190	NC_014910.1	1110881	1111873	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-quinone oxidoreductase	1110881..1111873	Alicycliphilus denitrificans BC	
ALIDE_RS05195	CDS	tpiA	NC_014910.1	1111870	1112664	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; triose-phosphate isomerase	1111870..1112664	Alicycliphilus denitrificans BC	
ALIDE_RS05200	CDS	secG	NC_014910.1	1112661	1113026	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecG	1112661..1113026	Alicycliphilus denitrificans BC	
ALIDE_RS05210	CDS	ALIDE_RS05210	NC_014910.1	1113315	1113674	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit A	1113315..1113674	Alicycliphilus denitrificans BC	
ALIDE_RS05215	CDS	ALIDE_RS05215	NC_014910.1	1113711	1114190	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit B	1113711..1114190	Alicycliphilus denitrificans BC	
ALIDE_RS05220	CDS	ALIDE_RS05220	NC_014910.1	1114200	1114808	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit C	1114200..1114808	Alicycliphilus denitrificans BC	
ALIDE_RS05225	CDS	ALIDE_RS05225	NC_014910.1	1114836	1116089	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit D	1114836..1116089	Alicycliphilus denitrificans BC	
ALIDE_RS05230	CDS	nuoE	NC_014910.1	1116086	1116577	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit NuoE	1116086..1116577	Alicycliphilus denitrificans BC	
ALIDE_RS05235	CDS	nuoF	NC_014910.1	1116574	1117923	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit NuoF	1116574..1117923	Alicycliphilus denitrificans BC	
ALIDE_RS05240	CDS	nuoG	NC_014910.1	1117939	1120059	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit NuoG	1117939..1120059	Alicycliphilus denitrificans BC	
ALIDE_RS05245	CDS	nuoH	NC_014910.1	1120056	1121132	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit NuoH	1120056..1121132	Alicycliphilus denitrificans BC	
ALIDE_RS05250	CDS	nuoI	NC_014910.1	1121149	1121661	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit NuoI	1121149..1121661	Alicycliphilus denitrificans BC	
ALIDE_RS05255	CDS	ALIDE_RS05255	NC_014910.1	1121703	1122371	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit J	1121703..1122371	Alicycliphilus denitrificans BC	
ALIDE_RS05260	CDS	nuoK	NC_014910.1	1122368	1122676	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit NuoK	1122368..1122676	Alicycliphilus denitrificans BC	
ALIDE_RS05265	CDS	nuoL	NC_014910.1	1122709	1124742	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit L	1122709..1124742	Alicycliphilus denitrificans BC	
ALIDE_RS05270	CDS	ALIDE_RS05270	NC_014910.1	1124756	1126231	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit M	1124756..1126231	Alicycliphilus denitrificans BC	
ALIDE_RS05275	CDS	nuoN	NC_014910.1	1126256	1127749	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-quinone oxidoreductase subunit NuoN	1126256..1127749	Alicycliphilus denitrificans BC	
ALIDE_RS05280	CDS	ALIDE_RS05280	NC_014910.1	1127769	1128086	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2818 family protein	1127769..1128086	Alicycliphilus denitrificans BC	
ALIDE_RS05285	CDS	ALIDE_RS05285	NC_014910.1	1128097	1128561	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1178 family protein	1128097..1128561	Alicycliphilus denitrificans BC	
ALIDE_RS05290	CDS	ALIDE_RS05290	NC_014910.1	1128568	1128936	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1128568..1128936)	Alicycliphilus denitrificans BC	
ALIDE_RS05295	CDS	gdhA	NC_014910.1	1128980	1130323	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADP-specific glutamate dehydrogenase	complement(1128980..1130323)	Alicycliphilus denitrificans BC	
ALIDE_RS05300	CDS	mutL	NC_014910.1	1130631	1132607	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair endonuclease MutL	complement(1130631..1132607)	Alicycliphilus denitrificans BC	
ALIDE_RS05305	CDS	ALIDE_RS05305	NC_014910.1	1132615	1132869	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine zipper 2TM domain-containing protein	complement(1132615..1132869)	Alicycliphilus denitrificans BC	
ALIDE_RS05310	CDS	ALIDE_RS05310	NC_014910.1	1133095	1133742	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DedA family protein	1133095..1133742	Alicycliphilus denitrificans BC	
ALIDE_RS05315	CDS	guaD	NC_014910.1	1133746	1135026	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; guanine deaminase	complement(1133746..1135026)	Alicycliphilus denitrificans BC	
ALIDE_RS05320	CDS	ALIDE_RS05320	NC_014910.1	1135031	1136284	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NCS2 family permease	complement(1135031..1136284)	Alicycliphilus denitrificans BC	
ALIDE_RS05325	CDS	ALIDE_RS05325	NC_014910.1	1136417	1137430	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(1136417..1137430)	Alicycliphilus denitrificans BC	
ALIDE_RS05330	CDS	xdhB	NC_014910.1	1137427	1139856	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase molybdopterin binding subunit	complement(1137427..1139856)	Alicycliphilus denitrificans BC	
ALIDE_RS05335	CDS	xdhA	NC_014910.1	1139866	1141425	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase small subunit	complement(1139866..1141425)	Alicycliphilus denitrificans BC	
ALIDE_RS05340	CDS	ALIDE_RS05340	NC_014910.1	1141635	1141970	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cupin domain-containing protein	complement(1141635..1141970)	Alicycliphilus denitrificans BC	
ALIDE_RS05345	CDS	ALIDE_RS05345	NC_014910.1	1141995	1143401	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase	complement(1141995..1143401)	Alicycliphilus denitrificans BC	
ALIDE_RS05350	CDS	tsaE	NC_014910.1	1143398	1143907	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	complement(1143398..1143907)	Alicycliphilus denitrificans BC	
ALIDE_RS05355	CDS	queG	NC_014910.1	1143890	1144972	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA epoxyqueuosine(34) reductase QueG	1143890..1144972	Alicycliphilus denitrificans BC	
ALIDE_RS05360	CDS	ALIDE_RS05360	NC_014910.1	1145031	1145948	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AEC family transporter	complement(1145031..1145948)	Alicycliphilus denitrificans BC	
ALIDE_RS05365	CDS	ALIDE_RS05365	NC_014910.1	1146141	1147106	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein BugE	1146141..1147106	Alicycliphilus denitrificans BC	
ALIDE_RS05370	CDS	xerD	NC_014910.1	1147154	1148053	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific tyrosine recombinase XerD	1147154..1148053	Alicycliphilus denitrificans BC	
ALIDE_RS24940	CDS	ALIDE_RS24940	NC_014910.1	1148326	1149387	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PAS domain-containing protein	complement(1148326..1149387)	Alicycliphilus denitrificans BC	
ALIDE_RS05380	CDS	ALIDE_RS05380	NC_014910.1	1149659	1150642	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	1149659..1150642	Alicycliphilus denitrificans BC	
ALIDE_RS05385	CDS	ALIDE_RS05385	NC_014910.1	1150662	1151948	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HDOD domain-containing protein	complement(1150662..1151948)	Alicycliphilus denitrificans BC	
ALIDE_RS05390	CDS	ALIDE_RS05390	NC_014910.1	1151986	1153254	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HDOD domain-containing protein	complement(1151986..1153254)	Alicycliphilus denitrificans BC	
ALIDE_RS05395	CDS	ALIDE_RS05395	NC_014910.1	1153343	1154149	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ferritin-like domain-containing protein	complement(1153343..1154149)	Alicycliphilus denitrificans BC	
ALIDE_RS05400	CDS	ALIDE_RS05400	NC_014910.1	1154199	1154723	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma carbonic anhydrase family protein	1154199..1154723	Alicycliphilus denitrificans BC	
ALIDE_RS05405	CDS	ALIDE_RS05405	NC_014910.1	1154733	1155719	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Hsp33 family molecular chaperone HslO	1154733..1155719	Alicycliphilus denitrificans BC	
ALIDE_RS05410	CDS	ALIDE_RS05410	NC_014910.1	1155784	1156545	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter substrate-binding domain-containing protein	1155784..1156545	Alicycliphilus denitrificans BC	
ALIDE_RS05415	CDS	ALIDE_RS05415	NC_014910.1	1156576	1157265	D	The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease subunit	1156576..1157265	Alicycliphilus denitrificans BC	
ALIDE_RS05420	CDS	ALIDE_RS05420	NC_014910.1	1157262	1157975	D	The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease subunit	1157262..1157975	Alicycliphilus denitrificans BC	
ALIDE_RS05425	CDS	ALIDE_RS05425	NC_014910.1	1157986	1158765	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding cassette domain-containing protein	1157986..1158765	Alicycliphilus denitrificans BC	
ALIDE_RS05430	CDS	ftsB	NC_014910.1	1158835	1159122	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsB	complement(1158835..1159122)	Alicycliphilus denitrificans BC	
ALIDE_RS05435	CDS	eno	NC_014910.1	1159150	1160436	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopyruvate hydratase	complement(1159150..1160436)	Alicycliphilus denitrificans BC	
ALIDE_RS05440	CDS	ALIDE_RS05440	NC_014910.1	1160619	1160909	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1330 domain-containing protein	complement(1160619..1160909)	Alicycliphilus denitrificans BC	
ALIDE_RS05445	CDS	kdsA	NC_014910.1	1160912	1161769	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-8-phosphooctulonate synthase	complement(1160912..1161769)	Alicycliphilus denitrificans BC	
ALIDE_RS05450	CDS	ALIDE_RS05450	NC_014910.1	1161775	1163424	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CTP synthase	complement(1161775..1163424)	Alicycliphilus denitrificans BC	
ALIDE_RS05455	CDS	coaBC	NC_014910.1	1163500	1164726	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	1163500..1164726	Alicycliphilus denitrificans BC	
ALIDE_RS05460	CDS	ALIDE_RS05460	NC_014910.1	1164723	1165124	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1164723..1165124	Alicycliphilus denitrificans BC	
ALIDE_RS05465	CDS	dut	NC_014910.1	1165193	1165639	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dUTP diphosphatase	1165193..1165639	Alicycliphilus denitrificans BC	
ALIDE_RS05470	CDS	ALIDE_RS05470	NC_014910.1	1165646	1166170	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidylprolyl isomerase	complement(1165646..1166170)	Alicycliphilus denitrificans BC	
ALIDE_RS05475	CDS	ALIDE_RS05475	NC_014910.1	1166224	1167348	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cupin domain-containing protein	1166224..1167348	Alicycliphilus denitrificans BC	
ALIDE_RS05480	CDS	ALIDE_RS05480	NC_014910.1	1167350	1167862	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1167350..1167862	Alicycliphilus denitrificans BC	
ALIDE_RS05485	CDS	ALIDE_RS05485	NC_014910.1	1168062	1168316	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1168062..1168316	Alicycliphilus denitrificans BC	
ALIDE_RS05490	CDS	bamC	NC_014910.1	1168428	1169516	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein assembly factor BamC	complement(1168428..1169516)	Alicycliphilus denitrificans BC	
ALIDE_RS05495	CDS	dapA	NC_014910.1	1169551	1170447	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-tetrahydrodipicolinate synthase	complement(1169551..1170447)	Alicycliphilus denitrificans BC	
ALIDE_RS05500	CDS	ALIDE_RS05500	NC_014910.1	1170456	1170986	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	complement(1170456..1170986)	Alicycliphilus denitrificans BC	
ALIDE_RS24895	CDS	ALIDE_RS24895	NC_014910.1	1170986	1171114	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1170986..1171114)	Alicycliphilus denitrificans BC	
ALIDE_RS05505	CDS	ALIDE_RS05505	NC_014910.1	1171119	1172336	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(1171119..1172336)	Alicycliphilus denitrificans BC	
ALIDE_RS05510	CDS	ALIDE_RS05510	NC_014910.1	1172432	1174408	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase IV subunit B	1172432..1174408	Alicycliphilus denitrificans BC	
ALIDE_RS05515	CDS	parC	NC_014910.1	1174464	1176806	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase IV subunit A	1174464..1176806	Alicycliphilus denitrificans BC	
ALIDE_RS05520	CDS	ALIDE_RS05520	NC_014910.1	1176914	1177372	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RidA family protein	complement(1176914..1177372)	Alicycliphilus denitrificans BC	
ALIDE_RS05525	CDS	ALIDE_RS05525	NC_014910.1	1177442	1179877	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA internalization-related competence protein ComEC/Rec2	1177442..1179877	Alicycliphilus denitrificans BC	
ALIDE_RS05530	CDS	ALIDE_RS05530	NC_014910.1	1180115	1181551	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent succinate-semialdehyde dehydrogenase	1180115..1181551	Alicycliphilus denitrificans BC	
ALIDE_RS05535	CDS	ALIDE_RS05535	NC_014910.1	1181757	1182656	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfurtransferase	complement(1181757..1182656)	Alicycliphilus denitrificans BC	
ALIDE_RS05540	CDS	ALIDE_RS05540	NC_014910.1	1182710	1183621	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	complement(1182710..1183621)	Alicycliphilus denitrificans BC	
ALIDE_RS05545	CDS	ALIDE_RS05545	NC_014910.1	1183715	1184854	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic ring-hydroxylating dioxygenase subunit alpha	complement(1183715..1184854)	Alicycliphilus denitrificans BC	
ALIDE_RS05550	CDS	ALIDE_RS05550	NC_014910.1	1185130	1185372	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII small subunit	1185130..1185372	Alicycliphilus denitrificans BC	
ALIDE_RS05555	CDS	ALIDE_RS05555	NC_014910.1	1185372	1186265	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; polyprenyl synthetase family protein	1185372..1186265	Alicycliphilus denitrificans BC	
ALIDE_RS05560	CDS	dxs	NC_014910.1	1186340	1188232	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-deoxy-D-xylulose-5-phosphate synthase	1186340..1188232	Alicycliphilus denitrificans BC	
ALIDE_RS05565	CDS	dctP	NC_014910.1	1188360	1189442	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter substrate-binding protein DctP	1188360..1189442	Alicycliphilus denitrificans BC	
ALIDE_RS05570	CDS	ALIDE_RS05570	NC_014910.1	1189522	1194219	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent helicase	complement(1189522..1194219)	Alicycliphilus denitrificans BC	
ALIDE_RS05575	CDS	ALIDE_RS05575	NC_014910.1	1194354	1196180	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter large permease subunit	complement(1194354..1196180)	Alicycliphilus denitrificans BC	
ALIDE_RS05580	CDS	ALIDE_RS05580	NC_014910.1	1196199	1196813	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter small permease subunit	complement(1196199..1196813)	Alicycliphilus denitrificans BC	
ALIDE_RS05585	CDS	ALIDE_RS05585	NC_014910.1	1197155	1198108	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; inositol monophosphatase family protein	complement(1197155..1198108)	Alicycliphilus denitrificans BC	
ALIDE_RS05590	CDS	ALIDE_RS05590	NC_014910.1	1198268	1199050	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA methyltransferase	1198268..1199050	Alicycliphilus denitrificans BC	
ALIDE_RS05595	CDS	cysE	NC_014910.1	1199088	1199879	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; serine O-acetyltransferase	1199088..1199879	Alicycliphilus denitrificans BC	
ALIDE_RS05600	CDS	ALIDE_RS05600	NC_014910.1	1199939	1200601	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitroreductase	1199939..1200601	Alicycliphilus denitrificans BC	
ALIDE_RS05605	CDS	ALIDE_RS05605	NC_014910.1	1200605	1201702	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)-dependent alcohol dehydrogenase	complement(1200605..1201702)	Alicycliphilus denitrificans BC	
ALIDE_RS05610	CDS	mog	NC_014910.1	1201795	1202391	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin adenylyltransferase	complement(1201795..1202391)	Alicycliphilus denitrificans BC	
ALIDE_RS05615	CDS	yjgA	NC_014910.1	1202388	1203056	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome biogenesis factor YjgA	complement(1202388..1203056)	Alicycliphilus denitrificans BC	
ALIDE_RS05620	CDS	pmbA	NC_014910.1	1203139	1204560	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloprotease PmbA	1203139..1204560	Alicycliphilus denitrificans BC	
ALIDE_RS05625	CDS	ALIDE_RS05625	NC_014910.1	1204570	1204818	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1204570..1204818)	Alicycliphilus denitrificans BC	
ALIDE_RS23990	CDS	ALIDE_RS23990	NC_014910.1	1204999	1205613	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1204999..1205613	Alicycliphilus denitrificans BC	
ALIDE_RS05630	CDS	ALIDE_RS05630	NC_014910.1	1205591	1206127	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1205591..1206127	Alicycliphilus denitrificans BC	
ALIDE_RS05635	CDS	ALIDE_RS05635	NC_014910.1	1206118	1206453	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1206118..1206453	Alicycliphilus denitrificans BC	
ALIDE_RS22985	CDS	ALIDE_RS22985	NC_014910.1	1206428	1209505	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; calcium-binding protein	complement(1206428..1209505)	Alicycliphilus denitrificans BC	
ALIDE_RS22990	CDS	ALIDE_RS22990	NC_014910.1	1209520	1210224	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1209520..1210224)	Alicycliphilus denitrificans BC	
ALIDE_RS05650	CDS	ALIDE_RS05650	NC_014910.1	1210224	1210535	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1210224..1210535)	Alicycliphilus denitrificans BC	
ALIDE_RS05655	CDS	ALIDE_RS05655	NC_014910.1	1210686	1211267	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; S24 family peptidase	complement(1210686..1211267)	Alicycliphilus denitrificans BC	
ALIDE_RS05665	CDS	ALIDE_RS05665	NC_014910.1	1212050	1213285	D	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	1212050..1213285	Alicycliphilus denitrificans BC	
ALIDE_RS24900	CDS	ALIDE_RS24900	NC_014910.1	1213325	1213780	D	incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; TerB N-terminal domain-containing protein	<1213325..>1213780	Alicycliphilus denitrificans BC	
ALIDE_RS24905	CDS	ALIDE_RS24905	NC_014910.1	1214282	1215220	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance TerB C-terminal domain-containing protein	1214282..1215220	Alicycliphilus denitrificans BC	
ALIDE_RS05675	CDS	ALIDE_RS05675	NC_014910.1	1215217	1216530	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	1215217..1216530	Alicycliphilus denitrificans BC	
ALIDE_RS05680	CDS	ALIDE_RS05680	NC_014910.1	1216539	1218743	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DEAD/DEAH box helicase	1216539..1218743	Alicycliphilus denitrificans BC	
ALIDE_RS05685	CDS	ALIDE_RS05685	NC_014910.1	1218907	1220466	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase	complement(1218907..1220466)	Alicycliphilus denitrificans BC	
ALIDE_RS05690	CDS	fumC	NC_014910.1	1220635	1222020	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class II fumarate hydratase	1220635..1222020	Alicycliphilus denitrificans BC	
ALIDE_RS05695	CDS	ALIDE_RS05695	NC_014910.1	1222021	1222803	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator	complement(1222021..1222803)	Alicycliphilus denitrificans BC	
ALIDE_RS05700	CDS	proX	NC_014910.1	1222990	1224000	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine betaine/L-proline ABC transporter substrate-binding protein ProX	complement(1222990..1224000)	Alicycliphilus denitrificans BC	
ALIDE_RS05705	CDS	proW	NC_014910.1	1224076	1225188	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine betaine/L-proline ABC transporter permease ProW	complement(1224076..1225188)	Alicycliphilus denitrificans BC	
ALIDE_RS05710	CDS	proV	NC_014910.1	1225185	1226489	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine betaine/L-proline ABC transporter ATP-binding protein ProV	complement(1225185..1226489)	Alicycliphilus denitrificans BC	
ALIDE_RS05715	CDS	acs	NC_014910.1	1227143	1229140	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate--CoA ligase	1227143..1229140	Alicycliphilus denitrificans BC	
ALIDE_RS05720	CDS	ALIDE_RS05720	NC_014910.1	1229255	1230301	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; VWA domain-containing protein	complement(1229255..1230301)	Alicycliphilus denitrificans BC	
ALIDE_RS05725	CDS	ALIDE_RS05725	NC_014910.1	1230334	1231302	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF58 domain-containing protein	complement(1230334..1231302)	Alicycliphilus denitrificans BC	
ALIDE_RS05730	CDS	ALIDE_RS05730	NC_014910.1	1231295	1232326	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MoxR family ATPase	complement(1231295..1232326)	Alicycliphilus denitrificans BC	
ALIDE_RS05735	CDS	ALIDE_RS05735	NC_014910.1	1232341	1233240	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; trypsin-like peptidase domain-containing protein	complement(1232341..1233240)	Alicycliphilus denitrificans BC	
ALIDE_RS05740	CDS	ALIDE_RS05740	NC_014910.1	1233345	1233707	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymuconolactone decarboxylase family protein	complement(1233345..1233707)	Alicycliphilus denitrificans BC	
ALIDE_RS05745	CDS	ALIDE_RS05745	NC_014910.1	1233879	1234160	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloregulator ArsR/SmtB family transcription factor	1233879..1234160	Alicycliphilus denitrificans BC	
ALIDE_RS05750	CDS	ALIDE_RS05750	NC_014910.1	1234190	1234387	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2892 domain-containing protein	1234190..1234387	Alicycliphilus denitrificans BC	
ALIDE_RS05755	CDS	ALIDE_RS05755	NC_014910.1	1234410	1235243	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TatD family hydrolase	1234410..1235243	Alicycliphilus denitrificans BC	
ALIDE_RS05760	CDS	ALIDE_RS05760	NC_014910.1	1235318	1235842	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-deoxyinosine glycosylase	1235318..1235842	Alicycliphilus denitrificans BC	
ALIDE_RS05765	CDS	ALIDE_RS05765	NC_014910.1	1235839	1236600	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1235839..1236600	Alicycliphilus denitrificans BC	
ALIDE_RS05770	CDS	ALIDE_RS05770	NC_014910.1	1236605	1238371	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GspE/PulE family protein	1236605..1238371	Alicycliphilus denitrificans BC	
ALIDE_RS05775	CDS	ALIDE_RS05775	NC_014910.1	1238502	1238990	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter TctB family protein	1238502..1238990	Alicycliphilus denitrificans BC	
ALIDE_RS05780	CDS	ALIDE_RS05780	NC_014910.1	1239007	1240518	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter permease	1239007..1240518	Alicycliphilus denitrificans BC	
ALIDE_RS05785	CDS	ALIDE_RS05785	NC_014910.1	1240720	1241550	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	1240720..1241550	Alicycliphilus denitrificans BC	
ALIDE_RS05790	CDS	ALIDE_RS05790	NC_014910.1	1241550	1242617	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter substrate-binding protein	1241550..1242617	Alicycliphilus denitrificans BC	
ALIDE_RS05795	CDS	ALIDE_RS05795	NC_014910.1	1242614	1245277	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphodiesterase	1242614..1245277	Alicycliphilus denitrificans BC	
ALIDE_RS05800	CDS	ALIDE_RS05800	NC_014910.1	1245300	1246202	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	complement(1245300..1246202)	Alicycliphilus denitrificans BC	
ALIDE_RS05805	CDS	ALIDE_RS05805	NC_014910.1	1246308	1247294	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase	1246308..1247294	Alicycliphilus denitrificans BC	
ALIDE_RS05810	CDS	ALIDE_RS05810	NC_014910.1	1247291	1248109	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX domain-containing protein	1247291..1248109	Alicycliphilus denitrificans BC	
ALIDE_RS05815	CDS	ALIDE_RS05815	NC_014910.1	1248063	1249004	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(1248063..1249004)	Alicycliphilus denitrificans BC	
ALIDE_RS05820	CDS	ALIDE_RS05820	NC_014910.1	1249119	1250084	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bile acid:sodium symporter family protein	1249119..1250084	Alicycliphilus denitrificans BC	
ALIDE_RS05825	CDS	ALIDE_RS05825	NC_014910.1	1250094	1251761	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Na/Pi cotransporter family protein	complement(1250094..1251761)	Alicycliphilus denitrificans BC	
ALIDE_RS05830	CDS	ALIDE_RS05830	NC_014910.1	1251784	1252623	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphodiesterase	complement(1251784..1252623)	Alicycliphilus denitrificans BC	
ALIDE_RS05835	CDS	ALIDE_RS05835	NC_014910.1	1252620	1253681	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(1252620..1253681)	Alicycliphilus denitrificans BC	
ALIDE_RS05840	CDS	ALIDE_RS05840	NC_014910.1	1253671	1254471	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease subunit	complement(1253671..1254471)	Alicycliphilus denitrificans BC	
ALIDE_RS05845	CDS	ALIDE_RS05845	NC_014910.1	1254497	1255306	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease subunit	complement(1254497..1255306)	Alicycliphilus denitrificans BC	
ALIDE_RS05850	CDS	ALIDE_RS05850	NC_014910.1	1255303	1256316	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(1255303..1256316)	Alicycliphilus denitrificans BC	
ALIDE_RS05855	CDS	ALIDE_RS05855	NC_014910.1	1256356	1257363	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family DNA-binding transcriptional regulator	complement(1256356..1257363)	Alicycliphilus denitrificans BC	
ALIDE_RS05860	CDS	lspA	NC_014910.1	1257471	1257968	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; signal peptidase II	complement(1257471..1257968)	Alicycliphilus denitrificans BC	
ALIDE_RS05865	CDS	ileS	NC_014910.1	1257968	1260823	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; isoleucine--tRNA ligase	complement(1257968..1260823)	Alicycliphilus denitrificans BC	
ALIDE_RS05870	CDS	ALIDE_RS05870	NC_014910.1	1260914	1261960	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional riboflavin kinase/FAD synthetase	complement(1260914..1261960)	Alicycliphilus denitrificans BC	
ALIDE_RS05875	CDS	ALIDE_RS05875	NC_014910.1	1262114	1262671	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HNH endonuclease	1262114..1262671	Alicycliphilus denitrificans BC	
ALIDE_RS05880	CDS	ALIDE_RS05880	NC_014910.1	1262726	1263841	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(1262726..1263841)	Alicycliphilus denitrificans BC	
ALIDE_RS05885	CDS	ALIDE_RS05885	NC_014910.1	1263856	1265037	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(1263856..1265037)	Alicycliphilus denitrificans BC	
ALIDE_RS05890	CDS	ALIDE_RS05890	NC_014910.1	1265083	1265772	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YceH family protein	complement(1265083..1265772)	Alicycliphilus denitrificans BC	
ALIDE_RS05895	CDS	purN	NC_014910.1	1265793	1266374	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylglycinamide formyltransferase	1265793..1266374	Alicycliphilus denitrificans BC	
ALIDE_RS05900	CDS	ALIDE_RS05900	NC_014910.1	1266490	1267809	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RsmB/NOP family class I SAM-dependent RNA methyltransferase	1266490..1267809	Alicycliphilus denitrificans BC	
ALIDE_RS05905	CDS	rpmG	NC_014910.1	1267921	1268091	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L33	complement(1267921..1268091)	Alicycliphilus denitrificans BC	
ALIDE_RS05910	CDS	rpmB	NC_014910.1	1268112	1268345	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L28	complement(1268112..1268345)	Alicycliphilus denitrificans BC	
ALIDE_RS05915	CDS	trxB	NC_014910.1	1268497	1269447	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin-disulfide reductase	complement(1268497..1269447)	Alicycliphilus denitrificans BC	
ALIDE_RS05920	CDS	ALIDE_RS05920	NC_014910.1	1269592	1271928	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA translocase FtsK	1269592..1271928	Alicycliphilus denitrificans BC	
ALIDE_RS05925	CDS	lolA	NC_014910.1	1271940	1272572	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein chaperone LolA	1271940..1272572	Alicycliphilus denitrificans BC	
ALIDE_RS05930	CDS	ALIDE_RS05930	NC_014910.1	1272576	1273532	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; prenyltransferase	complement(1272576..1273532)	Alicycliphilus denitrificans BC	
ALIDE_RS05935	CDS	ALIDE_RS05935	NC_014910.1	1273555	1274157	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil-DNA glycosylase family protein	complement(1273555..1274157)	Alicycliphilus denitrificans BC	
ALIDE_RS05940	CDS	ALIDE_RS05940	NC_014910.1	1274198	1275511	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; replication-associated recombination protein A	1274198..1275511	Alicycliphilus denitrificans BC	
ALIDE_RS05945	CDS	ALIDE_RS05945	NC_014910.1	1275710	1276639	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	1275710..1276639	Alicycliphilus denitrificans BC	
ALIDE_RS05950	CDS	ALIDE_RS05950	NC_014910.1	1276656	1277732	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1276656..1277732	Alicycliphilus denitrificans BC	
ALIDE_RS05955	CDS	ALIDE_RS05955	NC_014910.1	1277754	1278536	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1277754..1278536	Alicycliphilus denitrificans BC	
ALIDE_RS05960	CDS	ALIDE_RS05960	NC_014910.1	1278540	1279268	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1278540..1279268	Alicycliphilus denitrificans BC	
ALIDE_RS05965	CDS	ALIDE_RS05965	NC_014910.1	1279364	1279726	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family protein	1279364..1279726	Alicycliphilus denitrificans BC	
ALIDE_RS05970	CDS	ALIDE_RS05970	NC_014910.1	1279765	1280361	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane beta-barrel protein	complement(1279765..1280361)	Alicycliphilus denitrificans BC	
ALIDE_RS05975	CDS	ALIDE_RS05975	NC_014910.1	1280601	1281248	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF47 domain-containing protein	1280601..1281248	Alicycliphilus denitrificans BC	
ALIDE_RS05980	CDS	ALIDE_RS05980	NC_014910.1	1281269	1282279	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; inorganic phosphate transporter	1281269..1282279	Alicycliphilus denitrificans BC	
ALIDE_RS05985	CDS	ALIDE_RS05985	NC_014910.1	1282333	1282779	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TM2 domain-containing protein	complement(1282333..1282779)	Alicycliphilus denitrificans BC	
ALIDE_RS05990	CDS	ALIDE_RS05990	NC_014910.1	1282802	1283323	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	complement(1282802..1283323)	Alicycliphilus denitrificans BC	
ALIDE_RS05995	CDS	rpsP	NC_014910.1	1283446	1283700	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S16	1283446..1283700	Alicycliphilus denitrificans BC	
ALIDE_RS06000	CDS	rimM	NC_014910.1	1283794	1284366	D	Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome maturation factor RimM	1283794..1284366	Alicycliphilus denitrificans BC	
ALIDE_RS06005	CDS	trmD	NC_014910.1	1284374	1285141	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (guanosine(37)-N1)-methyltransferase TrmD	1284374..1285141	Alicycliphilus denitrificans BC	
ALIDE_RS06010	CDS	rplS	NC_014910.1	1285261	1285647	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L19	1285261..1285647	Alicycliphilus denitrificans BC	
ALIDE_RS06015	CDS	ALIDE_RS06015	NC_014910.1	1285758	1286441	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA pyrophosphatase	1285758..1286441	Alicycliphilus denitrificans BC	
ALIDE_RS06020	CDS	ALIDE_RS06020	NC_014910.1	1286488	1287477	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CobD/CbiB family protein	1286488..1287477	Alicycliphilus denitrificans BC	
ALIDE_RS06025	CDS	hisC	NC_014910.1	1287553	1288635	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidinol-phosphate transaminase	1287553..1288635	Alicycliphilus denitrificans BC	
ALIDE_RS06030	CDS	ALIDE_RS06030	NC_014910.1	1288642	1290300	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SulP family inorganic anion transporter	complement(1288642..1290300)	Alicycliphilus denitrificans BC	
ALIDE_RS06035	CDS	rsgA	NC_014910.1	1290315	1291286	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome small subunit-dependent GTPase A	complement(1290315..1291286)	Alicycliphilus denitrificans BC	
ALIDE_RS06040	CDS	ALIDE_RS06040	NC_014910.1	1291296	1291634	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4a-hydroxytetrahydrobiopterin dehydratase	complement(1291296..1291634)	Alicycliphilus denitrificans BC	
ALIDE_RS06045	CDS	ALIDE_RS06045	NC_014910.1	1291631	1292944	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M48 family metallopeptidase	complement(1291631..1292944)	Alicycliphilus denitrificans BC	
ALIDE_RS06050	CDS	orn	NC_014910.1	1292976	1293554	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; oligoribonuclease	1292976..1293554	Alicycliphilus denitrificans BC	
ALIDE_RS06055	CDS	ALIDE_RS06055	NC_014910.1	1293678	1294811	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter substrate-binding protein	1293678..1294811	Alicycliphilus denitrificans BC	
ALIDE_RS06060	CDS	ALIDE_RS06060	NC_014910.1	1295078	1296832	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DEAD/DEAH box helicase	1295078..1296832	Alicycliphilus denitrificans BC	
ALIDE_RS06065	CDS	ALIDE_RS06065	NC_014910.1	1296953	1298416	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor domain-containing diguanylate cyclase	1296953..1298416	Alicycliphilus denitrificans BC	
ALIDE_RS06070	CDS	ALIDE_RS06070	NC_014910.1	1298424	1299698	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug effflux MFS transporter	complement(1298424..1299698)	Alicycliphilus denitrificans BC	
ALIDE_RS06075	CDS	ALIDE_RS06075	NC_014910.1	1299844	1300329	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; copper chaperone PCu(A)C	complement(1299844..1300329)	Alicycliphilus denitrificans BC	
ALIDE_RS06080	CDS	ALIDE_RS06080	NC_014910.1	1300409	1300780	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2946 family protein	complement(1300409..1300780)	Alicycliphilus denitrificans BC	
ALIDE_RS06085	CDS	ALIDE_RS06085	NC_014910.1	1300802	1301533	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator	complement(1300802..1301533)	Alicycliphilus denitrificans BC	
ALIDE_RS06090	CDS	ALIDE_RS06090	NC_014910.1	1301609	1303762	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor	1301609..1303762	Alicycliphilus denitrificans BC	
ALIDE_RS06095	CDS	ALIDE_RS06095	NC_014910.1	1303764	1304780	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	1303764..1304780	Alicycliphilus denitrificans BC	
ALIDE_RS06100	CDS	ALIDE_RS06100	NC_014910.1	1304777	1305583	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	1304777..1305583	Alicycliphilus denitrificans BC	
ALIDE_RS06105	CDS	ALIDE_RS06105	NC_014910.1	1305603	1306463	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding cassette domain-containing protein	1305603..1306463	Alicycliphilus denitrificans BC	
ALIDE_RS06110	CDS	ALIDE_RS06110	NC_014910.1	1306531	1307754	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NnrS family protein	1306531..1307754	Alicycliphilus denitrificans BC	
ALIDE_RS06115	CDS	ALIDE_RS06115	NC_014910.1	1308074	1310029	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor	1308074..1310029	Alicycliphilus denitrificans BC	
ALIDE_RS06120	CDS	cobN	NC_014910.1	1310081	1314148	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cobaltochelatase subunit CobN	1310081..1314148	Alicycliphilus denitrificans BC	
ALIDE_RS24710	CDS	ALIDE_RS24710	NC_014910.1	1314170	1314790	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1314170..1314790)	Alicycliphilus denitrificans BC	
ALIDE_RS06130	CDS	ALIDE_RS06130	NC_014910.1	1314774	1315634	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1314774..1315634	Alicycliphilus denitrificans BC	
ALIDE_RS06135	CDS	ALIDE_RS06135	NC_014910.1	1315697	1316233	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MotA/TolQ/ExbB proton channel family protein	1315697..1316233	Alicycliphilus denitrificans BC	
ALIDE_RS06140	CDS	ALIDE_RS06140	NC_014910.1	1316230	1316553	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2149 domain-containing protein	1316230..1316553	Alicycliphilus denitrificans BC	
ALIDE_RS06145	CDS	ALIDE_RS06145	NC_014910.1	1316917	1317996	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine-type recombinase/integrase	complement(1316917..1317996)	Alicycliphilus denitrificans BC	
ALIDE_RS24385	CDS	ALIDE_RS24385	NC_014910.1	1317980	1318255	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4224 domain-containing protein	complement(1317980..1318255)	Alicycliphilus denitrificans BC	
ALIDE_RS24390	CDS	ALIDE_RS24390	NC_014910.1	1318258	1318716	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1318258..1318716)	Alicycliphilus denitrificans BC	
ALIDE_RS06160	CDS	ALIDE_RS06160	NC_014910.1	1318713	1318997	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1318713..1318997)	Alicycliphilus denitrificans BC	
ALIDE_RS24715	CDS	ALIDE_RS24715	NC_014910.1	1318994	1319530	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1318994..1319530)	Alicycliphilus denitrificans BC	
ALIDE_RS24720	CDS	ALIDE_RS24720	NC_014910.1	1319628	1320188	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA cytosine methyltransferase	complement(<1319628..1320188)	Alicycliphilus denitrificans BC	
ALIDE_RS06170	CDS	ALIDE_RS06170	NC_014910.1	1320190	1320402	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1320190..1320402)	Alicycliphilus denitrificans BC	
ALIDE_RS06175	CDS	ALIDE_RS06175	NC_014910.1	1320399	1321055	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1320399..1321055)	Alicycliphilus denitrificans BC	
ALIDE_RS06180	CDS	ALIDE_RS06180	NC_014910.1	1321052	1321270	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1321052..1321270)	Alicycliphilus denitrificans BC	
ALIDE_RS06185	CDS	ALIDE_RS06185	NC_014910.1	1321295	1321513	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1321295..1321513)	Alicycliphilus denitrificans BC	
ALIDE_RS06190	CDS	ALIDE_RS06190	NC_014910.1	1321519	1321791	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1321519..1321791)	Alicycliphilus denitrificans BC	
ALIDE_RS06195	CDS	ALIDE_RS06195	NC_014910.1	1321785	1323761	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; replication endonuclease	complement(1321785..1323761)	Alicycliphilus denitrificans BC	
ALIDE_RS06200	CDS	ALIDE_RS06200	NC_014910.1	1323765	1324043	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1323765..1324043)	Alicycliphilus denitrificans BC	
ALIDE_RS24395	CDS	ALIDE_RS24395	NC_014910.1	1324055	1324216	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1324055..1324216)	Alicycliphilus denitrificans BC	
ALIDE_RS24400	CDS	ALIDE_RS24400	NC_014910.1	1324213	1324371	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1324213..1324371)	Alicycliphilus denitrificans BC	
ALIDE_RS06205	CDS	ALIDE_RS06205	NC_014910.1	1324362	1324814	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1324362..1324814)	Alicycliphilus denitrificans BC	
ALIDE_RS06210	CDS	ALIDE_RS06210	NC_014910.1	1324906	1325319	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ogr/Delta-like zinc finger family protein	complement(1324906..1325319)	Alicycliphilus denitrificans BC	
ALIDE_RS06215	CDS	ALIDE_RS06215	NC_014910.1	1325359	1325628	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1325359..1325628)	Alicycliphilus denitrificans BC	
ALIDE_RS06220	CDS	ALIDE_RS06220	NC_014910.1	1325631	1325846	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1325631..1325846)	Alicycliphilus denitrificans BC	
ALIDE_RS06225	CDS	ALIDE_RS06225	NC_014910.1	1325865	1326086	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1325865..1326086)	Alicycliphilus denitrificans BC	
ALIDE_RS06230	CDS	ALIDE_RS06230	NC_014910.1	1326180	1326905	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; S24 family peptidase	1326180..1326905	Alicycliphilus denitrificans BC	
ALIDE_RS06235	CDS	ALIDE_RS06235	NC_014910.1	1326944	1327720	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; WYL domain-containing protein	1326944..1327720	Alicycliphilus denitrificans BC	
ALIDE_RS06240	CDS	ALIDE_RS06240	NC_014910.1	1328007	1328576	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1328007..1328576)	Alicycliphilus denitrificans BC	
ALIDE_RS06245	CDS	ALIDE_RS06245	NC_014910.1	1328652	1329101	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2442 domain-containing protein	complement(1328652..1329101)	Alicycliphilus denitrificans BC	
ALIDE_RS06250	CDS	ALIDE_RS06250	NC_014910.1	1329098	1329328	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4160 domain-containing protein	complement(1329098..1329328)	Alicycliphilus denitrificans BC	
ALIDE_RS06255	CDS	ALIDE_RS06255	NC_014910.1	1329380	1330405	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage late control D family protein	complement(1329380..1330405)	Alicycliphilus denitrificans BC	
ALIDE_RS06260	CDS	ALIDE_RS06260	NC_014910.1	1330393	1330836	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail protein	complement(1330393..1330836)	Alicycliphilus denitrificans BC	
ALIDE_RS06265	CDS	ALIDE_RS06265	NC_014910.1	1330845	1333355	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail tape measure protein	complement(1330845..1333355)	Alicycliphilus denitrificans BC	
ALIDE_RS06270	CDS	ALIDE_RS06270	NC_014910.1	1333392	1333619	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1333392..1333619)	Alicycliphilus denitrificans BC	
ALIDE_RS23320	CDS	ALIDE_RS23320	NC_014910.1	1333662	1333778	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GpE family phage tail protein	complement(1333662..1333778)	Alicycliphilus denitrificans BC	
ALIDE_RS06280	CDS	ALIDE_RS06280	NC_014910.1	1333787	1334146	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail assembly protein	complement(1333787..1334146)	Alicycliphilus denitrificans BC	
ALIDE_RS06285	CDS	ALIDE_RS06285	NC_014910.1	1334182	1334691	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage major tail tube protein	complement(1334182..1334691)	Alicycliphilus denitrificans BC	
ALIDE_RS06290	CDS	ALIDE_RS06290	NC_014910.1	1334717	1335904	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail sheath protein	complement(1334717..1335904)	Alicycliphilus denitrificans BC	
ALIDE_RS06295	CDS	ALIDE_RS06295	NC_014910.1	1335929	1336171	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1335929..1336171)	Alicycliphilus denitrificans BC	
ALIDE_RS06300	CDS	ALIDE_RS06300	NC_014910.1	1336218	1336871	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1336218..1336871)	Alicycliphilus denitrificans BC	
ALIDE_RS06305	CDS	ALIDE_RS06305	NC_014910.1	1336880	1337800	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1336880..1337800)	Alicycliphilus denitrificans BC	
ALIDE_RS06310	CDS	ALIDE_RS06310	NC_014910.1	1337801	1338439	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1337801..1338439)	Alicycliphilus denitrificans BC	
ALIDE_RS06315	CDS	ALIDE_RS06315	NC_014910.1	1338456	1340702	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1338456..1340702)	Alicycliphilus denitrificans BC	
ALIDE_RS06320	CDS	ALIDE_RS06320	NC_014910.1	1340708	1341919	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail protein	complement(1340708..1341919)	Alicycliphilus denitrificans BC	
ALIDE_RS06325	CDS	ALIDE_RS06325	NC_014910.1	1341912	1342850	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate J/gp47 family protein	complement(1341912..1342850)	Alicycliphilus denitrificans BC	
ALIDE_RS06330	CDS	ALIDE_RS06330	NC_014910.1	1342847	1343197	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GPW/gp25 family protein	complement(1342847..1343197)	Alicycliphilus denitrificans BC	
ALIDE_RS06335	CDS	ALIDE_RS06335	NC_014910.1	1343194	1343790	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage baseplate assembly protein V	complement(1343194..1343790)	Alicycliphilus denitrificans BC	
ALIDE_RS06340	CDS	ALIDE_RS06340	NC_014910.1	1343867	1344325	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage virion morphogenesis protein	complement(1343867..1344325)	Alicycliphilus denitrificans BC	
ALIDE_RS24405	CDS	ALIDE_RS24405	NC_014910.1	1344318	1344464	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1344318..1344464)	Alicycliphilus denitrificans BC	
ALIDE_RS06345	CDS	ALIDE_RS06345	NC_014910.1	1344443	1344934	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail protein	complement(1344443..1344934)	Alicycliphilus denitrificans BC	
ALIDE_RS06350	CDS	ALIDE_RS06350	NC_014910.1	1344918	1345466	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2514 family protein	complement(1344918..1345466)	Alicycliphilus denitrificans BC	
ALIDE_RS24410	CDS	ALIDE_RS24410	NC_014910.1	1345513	1345680	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1345513..1345680)	Alicycliphilus denitrificans BC	
ALIDE_RS06355	CDS	ALIDE_RS06355	NC_014910.1	1345689	1346210	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycoside hydrolase family protein	complement(1345689..1346210)	Alicycliphilus denitrificans BC	
ALIDE_RS06360	CDS	ALIDE_RS06360	NC_014910.1	1346207	1346443	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1346207..1346443)	Alicycliphilus denitrificans BC	
ALIDE_RS06365	CDS	ALIDE_RS06365	NC_014910.1	1346450	1346653	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein X	complement(1346450..1346653)	Alicycliphilus denitrificans BC	
ALIDE_RS06370	CDS	ALIDE_RS06370	NC_014910.1	1346653	1347135	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; head completion/stabilization protein	complement(1346653..1347135)	Alicycliphilus denitrificans BC	
ALIDE_RS06375	CDS	gpM	NC_014910.1	1347262	1347966	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage terminase small subunit	complement(1347262..1347966)	Alicycliphilus denitrificans BC	
ALIDE_RS06380	CDS	ALIDE_RS06380	NC_014910.1	1348065	1349069	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage major capsid protein, P2 family	complement(1348065..1349069)	Alicycliphilus denitrificans BC	
ALIDE_RS06385	CDS	ALIDE_RS06385	NC_014910.1	1349129	1349959	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GPO family capsid scaffolding protein	complement(1349129..1349959)	Alicycliphilus denitrificans BC	
ALIDE_RS06390	CDS	ALIDE_RS06390	NC_014910.1	1350104	1352005	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase family protein	1350104..1352005	Alicycliphilus denitrificans BC	
ALIDE_RS06395	CDS	ALIDE_RS06395	NC_014910.1	1352008	1353099	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage portal protein	1352008..1353099	Alicycliphilus denitrificans BC	
ALIDE_RS06405	CDS	ALIDE_RS06405	NC_014910.1	1353726	1354703	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GMP reductase	complement(1353726..1354703)	Alicycliphilus denitrificans BC	
ALIDE_RS06410	CDS	ALIDE_RS06410	NC_014910.1	1354937	1357327	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UvrD-helicase domain-containing protein	1354937..1357327	Alicycliphilus denitrificans BC	
ALIDE_RS06415	CDS	ALIDE_RS06415	NC_014910.1	1357349	1359298	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alkaline phosphatase PhoX	complement(1357349..1359298)	Alicycliphilus denitrificans BC	
ALIDE_RS06420	CDS	ALIDE_RS06420	NC_014910.1	1359566	1361182	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GGDEF domain-containing protein	1359566..1361182	Alicycliphilus denitrificans BC	
ALIDE_RS06425	CDS	ALIDE_RS06425	NC_014910.1	1361195	1362016	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; BPSS1780 family membrane protein	complement(1361195..1362016)	Alicycliphilus denitrificans BC	
ALIDE_RS06430	CDS	ALIDE_RS06430	NC_014910.1	1362063	1363013	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; homoserine kinase	complement(1362063..1363013)	Alicycliphilus denitrificans BC	
ALIDE_RS06435	CDS	ALIDE_RS06435	NC_014910.1	1363091	1363456	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1363091..1363456)	Alicycliphilus denitrificans BC	
ALIDE_RS06440	CDS	ALIDE_RS06440	NC_014910.1	1363488	1363910	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1363488..1363910)	Alicycliphilus denitrificans BC	
ALIDE_RS06445	CDS	polA	NC_014910.1	1363992	1366757	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase I	1363992..1366757	Alicycliphilus denitrificans BC	
ALIDE_RS06450	CDS	ALIDE_RS06450	NC_014910.1	1366774	1367703	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(1366774..1367703)	Alicycliphilus denitrificans BC	
ALIDE_RS06455	CDS	ALIDE_RS06455	NC_014910.1	1367780	1368595	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	1367780..1368595	Alicycliphilus denitrificans BC	
ALIDE_RS06460	CDS	ALIDE_RS06460	NC_014910.1	1368791	1369759	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	1368791..1369759	Alicycliphilus denitrificans BC	
ALIDE_RS06465	CDS	ALIDE_RS06465	NC_014910.1	1369779	1370303	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymuconolactone decarboxylase family protein	1369779..1370303	Alicycliphilus denitrificans BC	
ALIDE_RS06470	CDS	ALIDE_RS06470	NC_014910.1	1370311	1371306	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(1370311..1371306)	Alicycliphilus denitrificans BC	
ALIDE_RS06475	CDS	ALIDE_RS06475	NC_014910.1	1371441	1372415	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	1371441..1372415	Alicycliphilus denitrificans BC	
ALIDE_RS06480	CDS	ALIDE_RS06480	NC_014910.1	1372443	1373636	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	1372443..1373636	Alicycliphilus denitrificans BC	
ALIDE_RS06485	CDS	ALIDE_RS06485	NC_014910.1	1373660	1374424	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase/isomerase family protein	1373660..1374424	Alicycliphilus denitrificans BC	
ALIDE_RS06490	CDS	ALIDE_RS06490	NC_014910.1	1374510	1375394	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dienelactone hydrolase family protein	1374510..1375394	Alicycliphilus denitrificans BC	
ALIDE_RS06495	CDS	ALIDE_RS06495	NC_014910.1	1375505	1376323	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ZIP family metal transporter	1375505..1376323	Alicycliphilus denitrificans BC	
ALIDE_RS06500	CDS	ALIDE_RS06500	NC_014910.1	1376423	1377166	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LytTR family DNA-binding domain-containing protein	complement(1376423..1377166)	Alicycliphilus denitrificans BC	
ALIDE_RS06505	CDS	serB	NC_014910.1	1377223	1377942	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoserine phosphatase SerB	complement(1377223..1377942)	Alicycliphilus denitrificans BC	
ALIDE_RS06510	CDS	ALIDE_RS06510	NC_014910.1	1378284	1380458	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAD family phosphatase	1378284..1380458	Alicycliphilus denitrificans BC	
ALIDE_RS06515	CDS	ALIDE_RS06515	NC_014910.1	1380625	1381305	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1380625..1381305)	Alicycliphilus denitrificans BC	
ALIDE_RS06520	CDS	mfd	NC_014910.1	1381312	1384803	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription-repair coupling factor	complement(1381312..1384803)	Alicycliphilus denitrificans BC	
ALIDE_RS06525	CDS	ispD	NC_014910.1	1384882	1385730	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	1384882..1385730	Alicycliphilus denitrificans BC	
ALIDE_RS06530	CDS	ispF	NC_014910.1	1385751	1386230	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	1385751..1386230	Alicycliphilus denitrificans BC	
ALIDE_RS06535	CDS	ALIDE_RS06535	NC_014910.1	1386303	1387808	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase	complement(1386303..1387808)	Alicycliphilus denitrificans BC	
ALIDE_RS06540	CDS	ompR	NC_014910.1	1387881	1388612	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; two-component system response regulator OmpR	complement(1387881..1388612)	Alicycliphilus denitrificans BC	
ALIDE_RS06545	CDS	ALIDE_RS06545	NC_014910.1	1388821	1389537	D	The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress.; The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; SIMPL domain-containing protein	1388821..1389537	Alicycliphilus denitrificans BC	
ALIDE_RS06550	CDS	ALIDE_RS06550	NC_014910.1	1389592	1390374	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxybutyrate dehydrogenase	complement(1389592..1390374)	Alicycliphilus denitrificans BC	
ALIDE_RS06555	CDS	ALIDE_RS06555	NC_014910.1	1390445	1391386	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	1390445..1391386	Alicycliphilus denitrificans BC	
ALIDE_RS06560	CDS	ALIDE_RS06560	NC_014910.1	1391416	1393629	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	1391416..1393629	Alicycliphilus denitrificans BC	
ALIDE_RS06570	CDS	ALIDE_RS06570	NC_014910.1	1394168	1394383	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1394168..1394383	Alicycliphilus denitrificans BC	
ALIDE_RS06575	CDS	ALIDE_RS06575	NC_014910.1	1394448	1394756	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein	1394448..1394756	Alicycliphilus denitrificans BC	
ALIDE_RS06580	CDS	phaR	NC_014910.1	1394949	1395488	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; polyhydroxyalkanoate synthesis repressor PhaR	1394949..1395488	Alicycliphilus denitrificans BC	
ALIDE_RS06585	CDS	rimO	NC_014910.1	1395526	1396917	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S12 methylthiotransferase RimO	1395526..1396917	Alicycliphilus denitrificans BC	
ALIDE_RS06590	CDS	ALIDE_RS06590	NC_014910.1	1396975	1397334	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FKBP-type peptidyl-prolyl cis-trans isomerase	complement(1396975..1397334)	Alicycliphilus denitrificans BC	
ALIDE_RS06595	CDS	ALIDE_RS06595	NC_014910.1	1397450	1397755	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; winged helix-turn-helix transcriptional regulator	complement(1397450..1397755)	Alicycliphilus denitrificans BC	
ALIDE_RS06600	CDS	ALIDE_RS06600	NC_014910.1	1397907	1398836	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(1397907..1398836)	Alicycliphilus denitrificans BC	
ALIDE_RS06605	CDS	ALIDE_RS06605	NC_014910.1	1398945	1399874	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylglutaryl-CoA lyase	1398945..1399874	Alicycliphilus denitrificans BC	
ALIDE_RS06610	CDS	ALIDE_RS06610	NC_014910.1	1399905	1401098	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	1399905..1401098	Alicycliphilus denitrificans BC	
ALIDE_RS06615	CDS	ALIDE_RS06615	NC_014910.1	1401132	1402133	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	1401132..1402133	Alicycliphilus denitrificans BC	
ALIDE_RS06620	CDS	ALIDE_RS06620	NC_014910.1	1402207	1403157	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ketopantoate reductase family protein	complement(1402207..1403157)	Alicycliphilus denitrificans BC	
ALIDE_RS06625	CDS	ALIDE_RS06625	NC_014910.1	1403204	1403983	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-3-methyladenine glycosylase I	complement(1403204..1403983)	Alicycliphilus denitrificans BC	
ALIDE_RS06630	CDS	rpoD	NC_014910.1	1404153	1406561	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor RpoD	complement(1404153..1406561)	Alicycliphilus denitrificans BC	
ALIDE_RS06635	CDS	dnaG	NC_014910.1	1406820	1408745	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA primase	complement(1406820..1408745)	Alicycliphilus denitrificans BC	
ALIDE_RS06640	CDS	ALIDE_RS06640	NC_014910.1	1409085	1410731	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA synthetase	1409085..1410731	Alicycliphilus denitrificans BC	
ALIDE_RS06645	CDS	ALIDE_RS06645	NC_014910.1	1410788	1412350	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipase D family protein	complement(1410788..1412350)	Alicycliphilus denitrificans BC	
ALIDE_RS06650	CDS	ALIDE_RS06650	NC_014910.1	1412347	1413486	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; substrate-binding domain-containing protein	complement(1412347..1413486)	Alicycliphilus denitrificans BC	
ALIDE_RS06655	CDS	ALIDE_RS06655	NC_014910.1	1413537	1414271	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	1413537..1414271	Alicycliphilus denitrificans BC	
ALIDE_RS06660	CDS	ALIDE_RS06660	NC_014910.1	1414268	1415044	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate ABC transporter ATP-binding protein	1414268..1415044	Alicycliphilus denitrificans BC	
ALIDE_RS06665	CDS	ALIDE_RS06665	NC_014910.1	1415041	1415868	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; extracellular solute-binding protein	1415041..1415868	Alicycliphilus denitrificans BC	
ALIDE_RS06670	CDS	ALIDE_RS06670	NC_014910.1	1415889	1416818	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1415889..1416818)	Alicycliphilus denitrificans BC	
ALIDE_RS06675	CDS	modC	NC_014910.1	1416933	1418009	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter ATP-binding protein	complement(1416933..1418009)	Alicycliphilus denitrificans BC	
ALIDE_RS06680	CDS	modB	NC_014910.1	1418006	1418689	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter permease subunit	complement(1418006..1418689)	Alicycliphilus denitrificans BC	
ALIDE_RS06685	CDS	modA	NC_014910.1	1418783	1419547	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter substrate-binding protein	complement(1418783..1419547)	Alicycliphilus denitrificans BC	
ALIDE_RS06690	CDS	ALIDE_RS06690	NC_014910.1	1419614	1420405	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TOBE domain-containing protein	1419614..1420405	Alicycliphilus denitrificans BC	
ALIDE_RS06695	CDS	ALIDE_RS06695	NC_014910.1	1420568	1421338	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1420568..1421338	Alicycliphilus denitrificans BC	
ALIDE_RS06700	CDS	ALIDE_RS06700	NC_014910.1	1421340	1422050	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1421340..1422050	Alicycliphilus denitrificans BC	
ALIDE_RS06705	CDS	ALIDE_RS06705	NC_014910.1	1422100	1423302	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	1422100..1423302	Alicycliphilus denitrificans BC	
ALIDE_RS06710	CDS	ALIDE_RS06710	NC_014910.1	1423374	1424573	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	1423374..1424573	Alicycliphilus denitrificans BC	
ALIDE_RS06715	CDS	ALIDE_RS06715	NC_014910.1	1424620	1425504	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	1424620..1425504	Alicycliphilus denitrificans BC	
ALIDE_RS06720	CDS	ALIDE_RS06720	NC_014910.1	1425523	1426524	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	1425523..1426524	Alicycliphilus denitrificans BC	
ALIDE_RS06725	CDS	ALIDE_RS06725	NC_014910.1	1426580	1427674	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carotenoid 1,2-hydratase	complement(1426580..1427674)	Alicycliphilus denitrificans BC	
ALIDE_RS06730	CDS	ALIDE_RS06730	NC_014910.1	1427671	1428741	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PLP-dependent cysteine synthase family protein	complement(1427671..1428741)	Alicycliphilus denitrificans BC	
ALIDE_RS06735	CDS	ALIDE_RS06735	NC_014910.1	1428760	1431399	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FtsX-like permease family protein	complement(1428760..1431399)	Alicycliphilus denitrificans BC	
ALIDE_RS06740	CDS	ALIDE_RS06740	NC_014910.1	1431532	1431960	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Hsp20/alpha crystallin family protein	1431532..1431960	Alicycliphilus denitrificans BC	
ALIDE_RS06745	CDS	ALIDE_RS06745	NC_014910.1	1431970	1432632	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(1431970..1432632)	Alicycliphilus denitrificans BC	
ALIDE_RS06750	CDS	miaA	NC_014910.1	1432703	1433665	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	complement(1432703..1433665)	Alicycliphilus denitrificans BC	
ALIDE_RS06755	CDS	ALIDE_RS06755	NC_014910.1	1433655	1434623	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Bcr/CflA family efflux MFS transporter	complement(1433655..1434623)	Alicycliphilus denitrificans BC	
ALIDE_RS06760	CDS	ALIDE_RS06760	NC_014910.1	1434805	1435749	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-hydroxyacid dehydrogenase	1434805..1435749	Alicycliphilus denitrificans BC	
ALIDE_RS06765	CDS	ALIDE_RS06765	NC_014910.1	1435746	1436183	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HIT family protein	complement(1435746..1436183)	Alicycliphilus denitrificans BC	
ALIDE_RS06770	CDS	ALIDE_RS06770	NC_014910.1	1436293	1437315	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; porin	complement(1436293..1437315)	Alicycliphilus denitrificans BC	
ALIDE_RS06775	CDS	ALIDE_RS06775	NC_014910.1	1437563	1438186	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator	1437563..1438186	Alicycliphilus denitrificans BC	
ALIDE_RS06780	CDS	ALIDE_RS06780	NC_014910.1	1438472	1440568	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase	1438472..1440568	Alicycliphilus denitrificans BC	
ALIDE_RS06785	CDS	ALIDE_RS06785	NC_014910.1	1440705	1442294	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1440705..1442294	Alicycliphilus denitrificans BC	
ALIDE_RS06790	CDS	ALIDE_RS06790	NC_014910.1	1442281	1443354	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	1442281..1443354	Alicycliphilus denitrificans BC	
ALIDE_RS06795	CDS	ALIDE_RS06795	NC_014910.1	1443354	1444274	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	1443354..1444274	Alicycliphilus denitrificans BC	
ALIDE_RS06800	CDS	ALIDE_RS06800	NC_014910.1	1444297	1445442	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; BMP family ABC transporter substrate-binding protein	1444297..1445442	Alicycliphilus denitrificans BC	
ALIDE_RS06805	CDS	ALIDE_RS06805	NC_014910.1	1445483	1446649	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; BMP family ABC transporter substrate-binding protein	1445483..1446649	Alicycliphilus denitrificans BC	
ALIDE_RS06810	CDS	ALIDE_RS06810	NC_014910.1	1446700	1447998	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding oxidoreductase	complement(1446700..1447998)	Alicycliphilus denitrificans BC	
ALIDE_RS06815	CDS	ALIDE_RS06815	NC_014910.1	1447995	1448741	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein	complement(1447995..1448741)	Alicycliphilus denitrificans BC	
ALIDE_RS06820	CDS	ehuD	NC_014910.1	1448738	1449403	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ectoine/hydroxyectoine ABC transporter permease subunit EhuD	complement(1448738..1449403)	Alicycliphilus denitrificans BC	
ALIDE_RS06825	CDS	ALIDE_RS06825	NC_014910.1	1449430	1450200	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(1449430..1450200)	Alicycliphilus denitrificans BC	
ALIDE_RS06830	CDS	ALIDE_RS06830	NC_014910.1	1450404	1451198	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	1450404..1451198	Alicycliphilus denitrificans BC	
ALIDE_RS06835	CDS	ALIDE_RS06835	NC_014910.1	1451237	1451590	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cupin domain-containing protein	1451237..1451590	Alicycliphilus denitrificans BC	
ALIDE_RS06840	CDS	ALIDE_RS06840	NC_014910.1	1451683	1452735	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine deaminase	1451683..1452735	Alicycliphilus denitrificans BC	
ALIDE_RS06845	CDS	ALIDE_RS06845	NC_014910.1	1452741	1454048	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioester hydrolase/BAAT C-terminal domain-containing protein	complement(1452741..1454048)	Alicycliphilus denitrificans BC	
ALIDE_RS06850	CDS	ALIDE_RS06850	NC_014910.1	1454048	1455616	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(1454048..1455616)	Alicycliphilus denitrificans BC	
ALIDE_RS06855	CDS	ALIDE_RS06855	NC_014910.1	1455740	1456735	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; oligopeptide/dipeptide ABC transporter ATP-binding protein	complement(1455740..1456735)	Alicycliphilus denitrificans BC	
ALIDE_RS06860	CDS	ALIDE_RS06860	NC_014910.1	1456732	1457706	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(1456732..1457706)	Alicycliphilus denitrificans BC	
ALIDE_RS06865	CDS	ALIDE_RS06865	NC_014910.1	1457703	1458602	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	complement(1457703..1458602)	Alicycliphilus denitrificans BC	
ALIDE_RS06870	CDS	ALIDE_RS06870	NC_014910.1	1458599	1459573	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	complement(1458599..1459573)	Alicycliphilus denitrificans BC	
ALIDE_RS06875	CDS	ALIDE_RS06875	NC_014910.1	1459570	1460568	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(1459570..1460568)	Alicycliphilus denitrificans BC	
ALIDE_RS06880	CDS	kynB	NC_014910.1	1460751	1461398	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; arylformamidase	complement(1460751..1461398)	Alicycliphilus denitrificans BC	
ALIDE_RS06885	CDS	ALIDE_RS06885	NC_014910.1	1461400	1461723	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YkgJ family cysteine cluster protein	complement(1461400..1461723)	Alicycliphilus denitrificans BC	
ALIDE_RS06890	CDS	ALIDE_RS06890	NC_014910.1	1461843	1462142	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FeoA domain-containing protein	1461843..1462142	Alicycliphilus denitrificans BC	
ALIDE_RS06895	CDS	feoB	NC_014910.1	1462139	1464079	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ferrous iron transport protein B	1462139..1464079	Alicycliphilus denitrificans BC	
ALIDE_RS06900	CDS	ALIDE_RS06900	NC_014910.1	1464081	1464326	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1464081..1464326	Alicycliphilus denitrificans BC	
ALIDE_RS06905	CDS	ALIDE_RS06905	NC_014910.1	1464386	1464733	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YkgJ family cysteine cluster protein	complement(1464386..1464733)	Alicycliphilus denitrificans BC	
ALIDE_RS06910	CDS	ALIDE_RS06910	NC_014910.1	1464833	1465042	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2945 domain-containing protein	1464833..1465042	Alicycliphilus denitrificans BC	
ALIDE_RS06915	CDS	ALIDE_RS06915	NC_014910.1	1465049	1465582	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF488 domain-containing protein	1465049..1465582	Alicycliphilus denitrificans BC	
ALIDE_RS06920	CDS	argF	NC_014910.1	1465907	1466827	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine carbamoyltransferase	complement(1465907..1466827)	Alicycliphilus denitrificans BC	
ALIDE_RS06925	CDS	ALIDE_RS06925	NC_014910.1	1466844	1468040	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate aminotransferase family protein	complement(1466844..1468040)	Alicycliphilus denitrificans BC	
ALIDE_RS06930	CDS	ALIDE_RS06930	NC_014910.1	1468278	1468592	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3579 domain-containing protein	1468278..1468592	Alicycliphilus denitrificans BC	
ALIDE_RS06935	CDS	ALIDE_RS06935	NC_014910.1	1468636	1469073	R	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethylmenaquinone methyltransferase	complement(1468636..>1469073)	Alicycliphilus denitrificans BC	
ALIDE_RS23325	CDS	ALIDE_RS23325	NC_014910.1	1469213	1469701	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1469213..1469701)	Alicycliphilus denitrificans BC	
ALIDE_RS06940	CDS	rpsT	NC_014910.1	1470142	1470441	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S20	complement(1470142..1470441)	Alicycliphilus denitrificans BC	
ALIDE_RS06945	CDS	murJ	NC_014910.1	1470546	1472111	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; murein biosynthesis integral membrane protein MurJ	1470546..1472111	Alicycliphilus denitrificans BC	
ALIDE_RS06950	CDS	ALIDE_RS06950	NC_014910.1	1472128	1472976	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tetratricopeptide repeat protein	1472128..1472976	Alicycliphilus denitrificans BC	
ALIDE_RS06955	CDS	ALIDE_RS06955	NC_014910.1	1472978	1473373	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein	complement(1472978..1473373)	Alicycliphilus denitrificans BC	
ALIDE_RS06960	CDS	ALIDE_RS06960	NC_014910.1	1473605	1474690	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AI-2E family transporter	complement(1473605..1474690)	Alicycliphilus denitrificans BC	
ALIDE_RS06965	CDS	purM	NC_014910.1	1474724	1475764	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylformylglycinamidine cyclo-ligase	complement(1474724..1475764)	Alicycliphilus denitrificans BC	
ALIDE_RS06970	CDS	ALIDE_RS06970	NC_014910.1	1475921	1477873	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyltransferase family protein	complement(1475921..1477873)	Alicycliphilus denitrificans BC	
ALIDE_RS06975	CDS	hda	NC_014910.1	1478205	1478903	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DnaA regulatory inactivator Hda	1478205..1478903	Alicycliphilus denitrificans BC	
ALIDE_RS06980	CDS	ALIDE_RS06980	NC_014910.1	1478900	1479574	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAD family hydrolase	1478900..1479574	Alicycliphilus denitrificans BC	
ALIDE_RS06985	CDS	pcnB	NC_014910.1	1479571	1481139	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; polynucleotide adenylyltransferase PcnB	1479571..1481139	Alicycliphilus denitrificans BC	
ALIDE_RS06990	CDS	folK	NC_014910.1	1481136	1481654	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	1481136..1481654	Alicycliphilus denitrificans BC	
ALIDE_RS06995	CDS	ALIDE_RS06995	NC_014910.1	1481850	1482830	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 2 protein	1481850..1482830	Alicycliphilus denitrificans BC	
ALIDE_RS07000	CDS	ALIDE_RS07000	NC_014910.1	1482827	1484404	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 39 protein	1482827..1484404	Alicycliphilus denitrificans BC	
ALIDE_RS07005	CDS	ALIDE_RS07005	NC_014910.1	1484352	1484762	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GtrA family protein	complement(1484352..1484762)	Alicycliphilus denitrificans BC	
ALIDE_RS07010	CDS	ALIDE_RS07010	NC_014910.1	1484832	1485635	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ChbG/HpnK family deacetylase	1484832..1485635	Alicycliphilus denitrificans BC	
ALIDE_RS07015	CDS	ALIDE_RS07015	NC_014910.1	1485693	1486664	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(1485693..1486664)	Alicycliphilus denitrificans BC	
ALIDE_RS07020	CDS	ALIDE_RS07020	NC_014910.1	1486714	1487697	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(1486714..1487697)	Alicycliphilus denitrificans BC	
ALIDE_RS07025	CDS	ALIDE_RS07025	NC_014910.1	1487750	1488760	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen decarboxylase family protein	complement(1487750..1488760)	Alicycliphilus denitrificans BC	
ALIDE_RS07030	CDS	ALIDE_RS07030	NC_014910.1	1488971	1489888	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(1488971..1489888)	Alicycliphilus denitrificans BC	
ALIDE_RS07035	CDS	ALIDE_RS07035	NC_014910.1	1490005	1491153	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PLP-dependent cysteine synthase family protein	1490005..1491153	Alicycliphilus denitrificans BC	
ALIDE_RS07040	CDS	ALIDE_RS07040	NC_014910.1	1491160	1492221	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-6-deoxy-delta-3,4-glucoseen reductase	complement(1491160..1492221)	Alicycliphilus denitrificans BC	
ALIDE_RS07045	CDS	ALIDE_RS07045	NC_014910.1	1492290	1493231	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent epimerase/dehydratase family protein	1492290..1493231	Alicycliphilus denitrificans BC	
ALIDE_RS07050	CDS	ALIDE_RS07050	NC_014910.1	1493219	1493851	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4124 domain-containing protein	complement(1493219..1493851)	Alicycliphilus denitrificans BC	
ALIDE_RS07055	CDS	ALIDE_RS07055	NC_014910.1	1493886	1494410	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1493886..1494410)	Alicycliphilus denitrificans BC	
ALIDE_RS07060	CDS	ALIDE_RS07060	NC_014910.1	1494538	1495626	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS5-like element ISDisp1 family transposase	1494538..1495626	Alicycliphilus denitrificans BC	
ALIDE_RS07065	CDS	ALIDE_RS07065	NC_014910.1	1495938	1496906	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein BugE	complement(1495938..1496906)	Alicycliphilus denitrificans BC	
ALIDE_RS07070	CDS	ALIDE_RS07070	NC_014910.1	1496975	1498216	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	complement(1496975..1498216)	Alicycliphilus denitrificans BC	
ALIDE_RS07075	CDS	ALIDE_RS07075	NC_014910.1	1498276	1499472	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase	complement(1498276..1499472)	Alicycliphilus denitrificans BC	
ALIDE_RS07080	CDS	ALIDE_RS07080	NC_014910.1	1499644	1500594	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	1499644..1500594	Alicycliphilus denitrificans BC	
ALIDE_RS07085	CDS	ALIDE_RS07085	NC_014910.1	1500589	1500981	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LrgB family protein	complement(1500589..1500981)	Alicycliphilus denitrificans BC	
ALIDE_RS07090	CDS	ALIDE_RS07090	NC_014910.1	1500981	1501292	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CidA/LrgA family protein	complement(1500981..1501292)	Alicycliphilus denitrificans BC	
ALIDE_RS07095	CDS	ALIDE_RS07095	NC_014910.1	1501561	1501788	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1501561..1501788	Alicycliphilus denitrificans BC	
ALIDE_RS07100	CDS	ALIDE_RS07100	NC_014910.1	1501952	1502248	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1501952..1502248)	Alicycliphilus denitrificans BC	
ALIDE_RS07105	CDS	ALIDE_RS07105	NC_014910.1	1502404	1503006	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PEP-CTERM sorting domain-containing protein	complement(1502404..1503006)	Alicycliphilus denitrificans BC	
ALIDE_RS07110	CDS	ALIDE_RS07110	NC_014910.1	1503230	1503547	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage head closure protein	complement(1503230..1503547)	Alicycliphilus denitrificans BC	
ALIDE_RS07115	CDS	ALIDE_RS07115	NC_014910.1	1503544	1503822	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; head-tail connector protein	complement(1503544..1503822)	Alicycliphilus denitrificans BC	
ALIDE_RS07120	CDS	ALIDE_RS07120	NC_014910.1	1504003	1505502	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase TerL endonuclease subunit	complement(1504003..1505502)	Alicycliphilus denitrificans BC	
ALIDE_RS07125	CDS	ALIDE_RS07125	NC_014910.1	1505531	1505941	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1505531..1505941)	Alicycliphilus denitrificans BC	
ALIDE_RS07130	CDS	ALIDE_RS07130	NC_014910.1	1506007	1506360	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; HNH endonuclease signature motif containing protein	complement(1506007..1506360)	Alicycliphilus denitrificans BC	
ALIDE_RS07135	CDS	ALIDE_RS07135	NC_014910.1	1506357	1507550	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage portal protein	complement(1506357..1507550)	Alicycliphilus denitrificans BC	
ALIDE_RS07140	CDS	ALIDE_RS07140	NC_014910.1	1507547	1508095	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HK97 family phage prohead protease	complement(1507547..1508095)	Alicycliphilus denitrificans BC	
ALIDE_RS07145	CDS	ALIDE_RS07145	NC_014910.1	1508106	1509332	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage major capsid protein	complement(1508106..1509332)	Alicycliphilus denitrificans BC	
ALIDE_RS07150	CDS	ALIDE_RS07150	NC_014910.1	1510556	1511257	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1510556..1511257)	Alicycliphilus denitrificans BC	
ALIDE_RS07160	CDS	ALIDE_RS07160	NC_014910.1	1511343	1512577	D	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	join(1511343..1511631,1511631..1512577)	Alicycliphilus denitrificans BC	
ALIDE_RS07165	CDS	ALIDE_RS07165	NC_014910.1	1512609	1512824	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	complement(1512609..1512824)	Alicycliphilus denitrificans BC	
ALIDE_RS07170	CDS	ALIDE_RS07170	NC_014910.1	1512821	1513069	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AlpA family phage regulatory protein	complement(1512821..1513069)	Alicycliphilus denitrificans BC	
ALIDE_RS24010	CDS	ALIDE_RS24010	NC_014910.1	1513127	1513936	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1513127..1513936)	Alicycliphilus denitrificans BC	
ALIDE_RS24015	CDS	ALIDE_RS24015	NC_014910.1	1514026	1514514	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1514026..1514514)	Alicycliphilus denitrificans BC	
ALIDE_RS07180	CDS	ALIDE_RS07180	NC_014910.1	1514616	1515851	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase arm-type DNA-binding domain-containing protein	complement(1514616..1515851)	Alicycliphilus denitrificans BC	
ALIDE_RS07190	CDS	ALIDE_RS07190	NC_014910.1	1516206	1518056	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M14 family metallopeptidase	complement(1516206..1518056)	Alicycliphilus denitrificans BC	
ALIDE_RS07195	CDS	ALIDE_RS07195	NC_014910.1	1518157	1519851	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DEAD/DEAH box helicase	complement(1518157..1519851)	Alicycliphilus denitrificans BC	
ALIDE_RS07200	CDS	ettA	NC_014910.1	1520109	1521770	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; energy-dependent translational throttle protein EttA	1520109..1521770	Alicycliphilus denitrificans BC	
ALIDE_RS07205	CDS	ALIDE_RS07205	NC_014910.1	1521777	1523108	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TAXI family TRAP transporter solute-binding subunit	complement(1521777..1523108)	Alicycliphilus denitrificans BC	
ALIDE_RS07210	CDS	ALIDE_RS07210	NC_014910.1	1523115	1524128	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; P1 family peptidase	complement(1523115..1524128)	Alicycliphilus denitrificans BC	
ALIDE_RS07215	CDS	ALIDE_RS07215	NC_014910.1	1524167	1524646	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF411 domain-containing protein	complement(1524167..1524646)	Alicycliphilus denitrificans BC	
ALIDE_RS07220	CDS	ALIDE_RS07220	NC_014910.1	1524673	1525158	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cupredoxin family protein	complement(1524673..1525158)	Alicycliphilus denitrificans BC	
ALIDE_RS07225	CDS	ALIDE_RS07225	NC_014910.1	1525259	1525606	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1525259..1525606)	Alicycliphilus denitrificans BC	
ALIDE_RS07230	CDS	ALIDE_RS07230	NC_014910.1	1525624	1526250	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YitT family protein	complement(1525624..1526250)	Alicycliphilus denitrificans BC	
ALIDE_RS07235	CDS	ALIDE_RS07235	NC_014910.1	1526397	1528412	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation-translocating P-type ATPase	complement(1526397..1528412)	Alicycliphilus denitrificans BC	
ALIDE_RS07240	CDS	ALIDE_RS07240	NC_014910.1	1528453	1528911	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Cd(II)/Pb(II)-responsive transcriptional regulator	1528453..1528911	Alicycliphilus denitrificans BC	
ALIDE_RS07245	CDS	ALIDE_RS07245	NC_014910.1	1529012	1529827	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	1529012..1529827	Alicycliphilus denitrificans BC	
ALIDE_RS07250	CDS	ALIDE_RS07250	NC_014910.1	1529849	1530832	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MlaD family protein	1529849..1530832	Alicycliphilus denitrificans BC	
ALIDE_RS07255	CDS	ALIDE_RS07255	NC_014910.1	1530996	1531679	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1530996..1531679	Alicycliphilus denitrificans BC	
ALIDE_RS07260	CDS	ALIDE_RS07260	NC_014910.1	1531661	1532494	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase/phosphoenolpyruvate mutase family protein	complement(1531661..1532494)	Alicycliphilus denitrificans BC	
ALIDE_RS07265	CDS	ALIDE_RS07265	NC_014910.1	1532518	1534044	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-hydrate dehydratase	complement(1532518..1534044)	Alicycliphilus denitrificans BC	
ALIDE_RS07270	CDS	ALIDE_RS07270	NC_014910.1	1534074	1535315	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase	complement(1534074..1535315)	Alicycliphilus denitrificans BC	
ALIDE_RS07275	CDS	ALIDE_RS07275	NC_014910.1	1535370	1536716	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidase	complement(1535370..1536716)	Alicycliphilus denitrificans BC	
ALIDE_RS07280	CDS	rpsB	NC_014910.1	1536935	1537687	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S2	1536935..1537687	Alicycliphilus denitrificans BC	
ALIDE_RS07285	CDS	tsf	NC_014910.1	1537802	1538698	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; translation elongation factor Ts	1537802..1538698	Alicycliphilus denitrificans BC	
ALIDE_RS07290	CDS	pyrH	NC_014910.1	1538752	1539474	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UMP kinase	1538752..1539474	Alicycliphilus denitrificans BC	
ALIDE_RS07295	CDS	frr	NC_014910.1	1539524	1540084	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome recycling factor	1539524..1540084	Alicycliphilus denitrificans BC	
ALIDE_RS07300	CDS	uppS	NC_014910.1	1540096	1540833	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; polyprenyl diphosphate synthase	1540096..1540833	Alicycliphilus denitrificans BC	
ALIDE_RS07305	CDS	ALIDE_RS07305	NC_014910.1	1540872	1541717	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidate cytidylyltransferase	1540872..1541717	Alicycliphilus denitrificans BC	
ALIDE_RS07310	CDS	ispC	NC_014910.1	1541721	1542896	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-deoxy-D-xylulose-5-phosphate reductoisomerase	1541721..1542896	Alicycliphilus denitrificans BC	
ALIDE_RS07315	CDS	rseP	NC_014910.1	1542999	1544360	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RIP metalloprotease RseP	1542999..1544360	Alicycliphilus denitrificans BC	
ALIDE_RS07320	CDS	bamA	NC_014910.1	1544406	1546703	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein assembly factor BamA	1544406..1546703	Alicycliphilus denitrificans BC	
ALIDE_RS07325	CDS	ALIDE_RS07325	NC_014910.1	1546703	1547227	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; OmpH family outer membrane protein	1546703..1547227	Alicycliphilus denitrificans BC	
ALIDE_RS07330	CDS	lpxD	NC_014910.1	1547256	1548254	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	1547256..1548254	Alicycliphilus denitrificans BC	
ALIDE_RS07335	CDS	fabZ	NC_014910.1	1548251	1548691	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxyacyl-ACP dehydratase FabZ	1548251..1548691	Alicycliphilus denitrificans BC	
ALIDE_RS07340	CDS	lpxA	NC_014910.1	1548717	1549505	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	1548717..1549505	Alicycliphilus denitrificans BC	
ALIDE_RS07345	CDS	lpxB	NC_014910.1	1549517	1550671	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid-A-disaccharide synthase	1549517..1550671	Alicycliphilus denitrificans BC	
ALIDE_RS07350	CDS	rnhB	NC_014910.1	1550646	1551266	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease HII	1550646..1551266	Alicycliphilus denitrificans BC	
ALIDE_RS07355	CDS	ALIDE_RS07355	NC_014910.1	1551263	1552039	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA methyltransferase	1551263..1552039	Alicycliphilus denitrificans BC	
ALIDE_RS07360	CDS	ALIDE_RS07360	NC_014910.1	1552355	1553599	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific integrase	1552355..1553599	Alicycliphilus denitrificans BC	
ALIDE_RS24020	CDS	ALIDE_RS24020	NC_014910.1	1553612	1554007	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1553612..1554007	Alicycliphilus denitrificans BC	
ALIDE_RS07370	CDS	ALIDE_RS07370	NC_014910.1	1554055	1555289	D	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	join(1554055..1554343,1554343..1555289)	Alicycliphilus denitrificans BC	
ALIDE_RS07380	CDS	ALIDE_RS07380	NC_014910.1	1555753	1556760	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; class 1 fructose-bisphosphatase	complement(1555753..1556760)	Alicycliphilus denitrificans BC	
ALIDE_RS07385	CDS	pepN	NC_014910.1	1556781	1559489	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase N	complement(1556781..1559489)	Alicycliphilus denitrificans BC	
ALIDE_RS07390	CDS	prfB	NC_014910.1	1559501	1560605	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 2	complement(join(1559501..1560523,1560525..1560605))	Alicycliphilus denitrificans BC	
ALIDE_RS07395	CDS	ALIDE_RS07395	NC_014910.1	1560674	1561678	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate dehydrogenase	complement(1560674..1561678)	Alicycliphilus denitrificans BC	
ALIDE_RS07400	CDS	ALIDE_RS07400	NC_014910.1	1561801	1562733	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	complement(1561801..1562733)	Alicycliphilus denitrificans BC	
ALIDE_RS07405	CDS	ALIDE_RS07405	NC_014910.1	1562853	1564181	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; extracellular solute-binding protein	1562853..1564181	Alicycliphilus denitrificans BC	
ALIDE_RS07410	CDS	ALIDE_RS07410	NC_014910.1	1564245	1565975	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter permease	1564245..1565975	Alicycliphilus denitrificans BC	
ALIDE_RS07415	CDS	ALIDE_RS07415	NC_014910.1	1565979	1567064	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1565979..1567064	Alicycliphilus denitrificans BC	
ALIDE_RS07420	CDS	ALIDE_RS07420	NC_014910.1	1567134	1568195	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldo/keto reductase	1567134..1568195	Alicycliphilus denitrificans BC	
ALIDE_RS07425	CDS	ybaK	NC_014910.1	1568259	1568759	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Cys-tRNA(Pro) deacylase	1568259..1568759	Alicycliphilus denitrificans BC	
ALIDE_RS07430	CDS	plsY	NC_014910.1	1568791	1569423	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate 1-O-acyltransferase PlsY	1568791..1569423	Alicycliphilus denitrificans BC	
ALIDE_RS07435	CDS	ALIDE_RS07435	NC_014910.1	1569426	1570424	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HD domain-containing phosphohydrolase	complement(1569426..1570424)	Alicycliphilus denitrificans BC	
ALIDE_RS07440	CDS	ALIDE_RS07440	NC_014910.1	1570454	1571101	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; retropepsin-like aspartic protease	complement(1570454..1571101)	Alicycliphilus denitrificans BC	
ALIDE_RS07445	CDS	ALIDE_RS07445	NC_014910.1	1571112	1571597	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YajQ family cyclic di-GMP-binding protein	complement(1571112..1571597)	Alicycliphilus denitrificans BC	
ALIDE_RS07450	CDS	murB	NC_014910.1	1571662	1572750	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate dehydrogenase	1571662..1572750	Alicycliphilus denitrificans BC	
ALIDE_RS07455	CDS	ALIDE_RS07455	NC_014910.1	1572858	1573223	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SPW repeat protein	complement(1572858..1573223)	Alicycliphilus denitrificans BC	
ALIDE_RS07460	CDS	ALIDE_RS07460	NC_014910.1	1573396	1574067	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	1573396..1574067	Alicycliphilus denitrificans BC	
ALIDE_RS07465	CDS	queC	NC_014910.1	1574064	1574783	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 7-cyano-7-deazaguanine synthase QueC	1574064..1574783	Alicycliphilus denitrificans BC	
ALIDE_RS07470	CDS	ALIDE_RS07470	NC_014910.1	1575163	1577307	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydantoinase/oxoprolinase family protein	1575163..1577307	Alicycliphilus denitrificans BC	
ALIDE_RS07475	CDS	ALIDE_RS07475	NC_014910.1	1577319	1579643	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydantoinase B/oxoprolinase family protein	1577319..1579643	Alicycliphilus denitrificans BC	
ALIDE_RS07480	CDS	ALIDE_RS07480	NC_014910.1	1579668	1580174	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetone carboxylase subunit gamma	1579668..1580174	Alicycliphilus denitrificans BC	
ALIDE_RS07485	CDS	ALIDE_RS07485	NC_014910.1	1580360	1582342	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54-dependent Fis family transcriptional regulator	1580360..1582342	Alicycliphilus denitrificans BC	
ALIDE_RS07490	CDS	argG	NC_014910.1	1582445	1583788	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; argininosuccinate synthase	complement(1582445..1583788)	Alicycliphilus denitrificans BC	
ALIDE_RS07495	CDS	ALIDE_RS07495	NC_014910.1	1583816	1584133	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrimidine/purine nucleoside phosphorylase	complement(1583816..1584133)	Alicycliphilus denitrificans BC	
ALIDE_RS07500	CDS	ALIDE_RS07500	NC_014910.1	1584194	1584865	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine zipper 2TM domain-containing protein	complement(1584194..1584865)	Alicycliphilus denitrificans BC	
ALIDE_RS07505	CDS	ALIDE_RS07505	NC_014910.1	1584986	1585372	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ArsC family reductase	complement(1584986..1585372)	Alicycliphilus denitrificans BC	
ALIDE_RS07510	CDS	folC	NC_014910.1	1585421	1586743	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional tetrahydrofolate synthase/dihydrofolate synthase	1585421..1586743	Alicycliphilus denitrificans BC	
ALIDE_RS07515	CDS	ALIDE_RS07515	NC_014910.1	1586753	1587589	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SPOR domain-containing protein	1586753..1587589	Alicycliphilus denitrificans BC	
ALIDE_RS07520	CDS	ALIDE_RS07520	NC_014910.1	1587603	1588091	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CvpA family protein	1587603..1588091	Alicycliphilus denitrificans BC	
ALIDE_RS07525	CDS	purF	NC_014910.1	1588155	1589663	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidophosphoribosyltransferase	1588155..1589663	Alicycliphilus denitrificans BC	
ALIDE_RS07530	CDS	ALIDE_RS07530	NC_014910.1	1589792	1591006	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; O-succinylhomoserine sulfhydrylase	1589792..1591006	Alicycliphilus denitrificans BC	
ALIDE_RS07535	CDS	gltX	NC_014910.1	1591003	1592406	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate--tRNA ligase	1591003..1592406	Alicycliphilus denitrificans BC	
ALIDE_RS07570	CDS	ALIDE_RS07570	NC_014910.1	1593200	1593958	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxyacyl-CoA dehydrogenase	complement(1593200..1593958)	Alicycliphilus denitrificans BC	
ALIDE_RS07575	CDS	ALIDE_RS07575	NC_014910.1	1594278	1594751	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1594278..1594751	Alicycliphilus denitrificans BC	
ALIDE_RS07580	CDS	ALIDE_RS07580	NC_014910.1	1594762	1595382	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1594762..1595382	Alicycliphilus denitrificans BC	
ALIDE_RS24910	CDS	ALIDE_RS24910	NC_014910.1	1595373	1595495	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1595373..1595495	Alicycliphilus denitrificans BC	
ALIDE_RS07585	CDS	ALIDE_RS07585	NC_014910.1	1595522	1597036	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS66 family transposase	complement(1595522..1597036)	Alicycliphilus denitrificans BC	
ALIDE_RS07590	CDS	tnpB	NC_014910.1	1597119	1597451	R	TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS66 family insertion sequence element accessory protein TnpB	complement(1597119..1597451)	Alicycliphilus denitrificans BC	
ALIDE_RS07595	CDS	ALIDE_RS07595	NC_014910.1	1597448	1597876	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase	complement(1597448..1597876)	Alicycliphilus denitrificans BC	
ALIDE_RS23000	CDS	ALIDE_RS23000	NC_014910.1	1598218	1598979	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1598218..1598979)	Alicycliphilus denitrificans BC	
ALIDE_RS07605	CDS	ALIDE_RS07605	NC_014910.1	1599009	1600105	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	complement(join(1599009..1599844,1599844..1600105))	Alicycliphilus denitrificans BC	
ALIDE_RS07615	CDS	ALIDE_RS07615	NC_014910.1	1600574	1601818	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase	complement(1600574..1601818)	Alicycliphilus denitrificans BC	
ALIDE_RS23005	CDS	ALIDE_RS23005	NC_014910.1	1601829	1602530	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1601829..1602530)	Alicycliphilus denitrificans BC	
ALIDE_RS07625	CDS	ALIDE_RS07625	NC_014910.1	1602530	1602829	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1602530..1602829)	Alicycliphilus denitrificans BC	
ALIDE_RS07630	CDS	ALIDE_RS07630	NC_014910.1	1603005	1603586	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; S24 family peptidase	complement(1603005..1603586)	Alicycliphilus denitrificans BC	
ALIDE_RS07640	CDS	ALIDE_RS07640	NC_014910.1	1603885	1605119	D	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	join(1603885..1604173,1604173..1605119)	Alicycliphilus denitrificans BC	
ALIDE_RS07645	CDS	ALIDE_RS07645	NC_014910.1	1605339	1606388	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe(3+) ABC transporter substrate-binding protein	complement(1605339..1606388)	Alicycliphilus denitrificans BC	
ALIDE_RS07650	CDS	ALIDE_RS07650	NC_014910.1	1606671	1607225	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phasin family protein	complement(1606671..1607225)	Alicycliphilus denitrificans BC	
ALIDE_RS07655	CDS	ALIDE_RS07655	NC_014910.1	1607483	1607956	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioesterase family protein	1607483..1607956	Alicycliphilus denitrificans BC	
ALIDE_RS07660	CDS	pncB	NC_014910.1	1608106	1609305	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate phosphoribosyltransferase	1608106..1609305	Alicycliphilus denitrificans BC	
ALIDE_RS07665	CDS	ALIDE_RS07665	NC_014910.1	1609353	1610765	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter	1609353..1610765	Alicycliphilus denitrificans BC	
ALIDE_RS07670	CDS	ALIDE_RS07670	NC_014910.1	1610782	1611762	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-glycerate dehydrogenase	1610782..1611762	Alicycliphilus denitrificans BC	
ALIDE_RS07675	CDS	rmuC	NC_014910.1	1611836	1613434	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA recombination protein RmuC	1611836..1613434	Alicycliphilus denitrificans BC	
ALIDE_RS07680	CDS	ALIDE_RS07680	NC_014910.1	1613431	1614594	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	1613431..1614594	Alicycliphilus denitrificans BC	
ALIDE_RS07685	CDS	ALIDE_RS07685	NC_014910.1	1614609	1615472	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR00730 family Rossman fold protein	complement(1614609..1615472)	Alicycliphilus denitrificans BC	
ALIDE_RS07690	CDS	crcB	NC_014910.1	1615602	1615997	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; fluoride efflux transporter CrcB	complement(1615602..1615997)	Alicycliphilus denitrificans BC	
ALIDE_RS07695	CDS	ALIDE_RS07695	NC_014910.1	1616021	1617796	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M14	complement(1616021..1617796)	Alicycliphilus denitrificans BC	
ALIDE_RS07700	CDS	ALIDE_RS07700	NC_014910.1	1617799	1618170	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; monovalent cation/H(+) antiporter subunit G	complement(1617799..1618170)	Alicycliphilus denitrificans BC	
ALIDE_RS07705	CDS	ALIDE_RS07705	NC_014910.1	1618167	1618448	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; K+/H+ antiporter subunit F	complement(1618167..1618448)	Alicycliphilus denitrificans BC	
ALIDE_RS07710	CDS	ALIDE_RS07710	NC_014910.1	1618445	1618936	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Na+/H+ antiporter subunit E	complement(1618445..1618936)	Alicycliphilus denitrificans BC	
ALIDE_RS07715	CDS	ALIDE_RS07715	NC_014910.1	1618933	1620645	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; monovalent cation/H+ antiporter subunit D	complement(1618933..1620645)	Alicycliphilus denitrificans BC	
ALIDE_RS07720	CDS	ALIDE_RS07720	NC_014910.1	1620707	1621072	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Na+/H+ antiporter subunit C	complement(1620707..1621072)	Alicycliphilus denitrificans BC	
ALIDE_RS07725	CDS	ALIDE_RS07725	NC_014910.1	1621073	1624033	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; monovalent cation/H+ antiporter subunit A	complement(1621073..1624033)	Alicycliphilus denitrificans BC	
ALIDE_RS07730	CDS	ALIDE_RS07730	NC_014910.1	1624122	1624541	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-hairpin-helix domain-containing protein	complement(1624122..1624541)	Alicycliphilus denitrificans BC	
ALIDE_RS07735	CDS	lapB	NC_014910.1	1624442	1625600	R	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide assembly protein LapB	complement(1624442..1625600)	Alicycliphilus denitrificans BC	
ALIDE_RS07740	CDS	ALIDE_RS07740	NC_014910.1	1625590	1625901	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide assembly protein LapA domain-containing protein	complement(1625590..1625901)	Alicycliphilus denitrificans BC	
ALIDE_RS07745	CDS	ALIDE_RS07745	NC_014910.1	1626107	1626892	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidylprolyl isomerase	complement(1626107..1626892)	Alicycliphilus denitrificans BC	
ALIDE_RS07750	CDS	ALIDE_RS07750	NC_014910.1	1626959	1627237	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; BolA family protein	complement(1626959..1627237)	Alicycliphilus denitrificans BC	
ALIDE_RS07755	CDS	ALIDE_RS07755	NC_014910.1	1627234	1627791	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; septation protein A	complement(1627234..1627791)	Alicycliphilus denitrificans BC	
ALIDE_RS07760	CDS	msrB	NC_014910.1	1627788	1628201	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide-methionine (R)-S-oxide reductase MsrB	complement(1627788..1628201)	Alicycliphilus denitrificans BC	
ALIDE_RS07765	CDS	ALIDE_RS07765	NC_014910.1	1628198	1629376	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YdiU family protein	complement(1628198..1629376)	Alicycliphilus denitrificans BC	
ALIDE_RS07770	CDS	ALIDE_RS07770	NC_014910.1	1629326	1630627	D	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	<1629326..1630627	Alicycliphilus denitrificans BC	
ALIDE_RS07775	CDS	ALIDE_RS07775	NC_014910.1	1630768	1632003	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter substrate-binding protein	1630768..1632003	Alicycliphilus denitrificans BC	
ALIDE_RS07780	CDS	ALIDE_RS07780	NC_014910.1	1632077	1633030	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	1632077..1633030	Alicycliphilus denitrificans BC	
ALIDE_RS07785	CDS	ALIDE_RS07785	NC_014910.1	1633035	1634369	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	1633035..1634369	Alicycliphilus denitrificans BC	
ALIDE_RS07790	CDS	ALIDE_RS07790	NC_014910.1	1634366	1635154	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1634366..1635154	Alicycliphilus denitrificans BC	
ALIDE_RS07795	CDS	ALIDE_RS07795	NC_014910.1	1635154	1635849	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1635154..1635849	Alicycliphilus denitrificans BC	
ALIDE_RS07800	CDS	ALIDE_RS07800	NC_014910.1	1636044	1638143	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein	1636044..1638143	Alicycliphilus denitrificans BC	
ALIDE_RS07805	CDS	ALIDE_RS07805	NC_014910.1	1638178	1639347	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA C-acyltransferase	1638178..1639347	Alicycliphilus denitrificans BC	
ALIDE_RS07810	CDS	ALIDE_RS07810	NC_014910.1	1639575	1640477	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate ABC transporter substrate-binding protein	1639575..1640477	Alicycliphilus denitrificans BC	
ALIDE_RS07815	CDS	ALIDE_RS07815	NC_014910.1	1640481	1641143	D	The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease subunit	1640481..1641143	Alicycliphilus denitrificans BC	
ALIDE_RS07820	CDS	ALIDE_RS07820	NC_014910.1	1641140	1641940	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease	1641140..1641940	Alicycliphilus denitrificans BC	
ALIDE_RS07825	CDS	ALIDE_RS07825	NC_014910.1	1642409	1644274	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase	1642409..1644274	Alicycliphilus denitrificans BC	
ALIDE_RS07830	CDS	ALIDE_RS07830	NC_014910.1	1644307	1644810	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-dependent oxidoreductase	1644307..1644810	Alicycliphilus denitrificans BC	
ALIDE_RS24415	CDS	ALIDE_RS24415	NC_014910.1	1644832	1644969	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1644832..1644969	Alicycliphilus denitrificans BC	
ALIDE_RS07835	CDS	ALIDE_RS07835	NC_014910.1	1645051	1645899	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	1645051..1645899	Alicycliphilus denitrificans BC	
ALIDE_RS24420	CDS	ALIDE_RS24420	NC_014910.1	1646348	1646500	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1646348..1646500)	Alicycliphilus denitrificans BC	
ALIDE_RS07845	CDS	ALIDE_RS07845	NC_014910.1	1646493	1646921	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1646493..1646921)	Alicycliphilus denitrificans BC	
ALIDE_RS23340	CDS	ALIDE_RS23340	NC_014910.1	1647121	1647537	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; VRR-NUC domain-containing protein	complement(1647121..1647537)	Alicycliphilus denitrificans BC	
ALIDE_RS07855	CDS	ALIDE_RS07855	NC_014910.1	1647578	1649530	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AAA family ATPase	complement(1647578..1649530)	Alicycliphilus denitrificans BC	
ALIDE_RS07860	CDS	ALIDE_RS07860	NC_014910.1	1649530	1649817	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1649530..1649817)	Alicycliphilus denitrificans BC	
ALIDE_RS23345	CDS	ALIDE_RS23345	NC_014910.1	1649814	1650167	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1649814..1650167)	Alicycliphilus denitrificans BC	
ALIDE_RS23350	CDS	ALIDE_RS23350	NC_014910.1	1650248	1650499	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1650248..1650499)	Alicycliphilus denitrificans BC	
ALIDE_RS24555	CDS	ALIDE_RS24555	NC_014910.1	1650604	1651428	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1650604..1651428)	Alicycliphilus denitrificans BC	
ALIDE_RS07870	CDS	ALIDE_RS07870	NC_014910.1	1651537	1652871	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific integrase	complement(1651537..1652871)	Alicycliphilus denitrificans BC	
ALIDE_RS07875	CDS	ALIDE_RS07875	NC_014910.1	1653351	1654697	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TolC family outer membrane protein	complement(1653351..1654697)	Alicycliphilus denitrificans BC	
ALIDE_RS07880	CDS	ALIDE_RS07880	NC_014910.1	1654714	1655052	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; rhodanese-like domain-containing protein	complement(1654714..1655052)	Alicycliphilus denitrificans BC	
ALIDE_RS07885	CDS	ALIDE_RS07885	NC_014910.1	1655071	1655781	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-L-isoaspartate O-methyltransferase	complement(1655071..1655781)	Alicycliphilus denitrificans BC	
ALIDE_RS07890	CDS	ALIDE_RS07890	NC_014910.1	1655832	1656494	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	complement(1655832..1656494)	Alicycliphilus denitrificans BC	
ALIDE_RS07895	CDS	msrA	NC_014910.1	1656643	1657191	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide-methionine (S)-S-oxide reductase MsrA	1656643..1657191	Alicycliphilus denitrificans BC	
ALIDE_RS07900	CDS	ALIDE_RS07900	NC_014910.1	1657216	1657599	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1657216..1657599	Alicycliphilus denitrificans BC	
ALIDE_RS07905	CDS	ALIDE_RS07905	NC_014910.1	1657772	1659823	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor	1657772..1659823	Alicycliphilus denitrificans BC	
ALIDE_RS07910	CDS	ALIDE_RS07910	NC_014910.1	1660326	1661198	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1660326..1661198	Alicycliphilus denitrificans BC	
ALIDE_RS07915	CDS	chrA	NC_014910.1	1661250	1662470	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; chromate efflux transporter	1661250..1662470	Alicycliphilus denitrificans BC	
ALIDE_RS07920	CDS	ALIDE_RS07920	NC_014910.1	1662602	1663540	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AEC family transporter	1662602..1663540	Alicycliphilus denitrificans BC	
ALIDE_RS07925	CDS	pdxH	NC_014910.1	1663541	1664195	R	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxamine 5'-phosphate oxidase	complement(1663541..1664195)	Alicycliphilus denitrificans BC	
ALIDE_RS07930	CDS	ALIDE_RS07930	NC_014910.1	1664212	1664805	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamylcyclotransferase	complement(1664212..1664805)	Alicycliphilus denitrificans BC	
ALIDE_RS07935	CDS	ALIDE_RS07935	NC_014910.1	1664868	1665389	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; OmpA family protein	1664868..1665389	Alicycliphilus denitrificans BC	
ALIDE_RS07940	CDS	ALIDE_RS07940	NC_014910.1	1665438	1666484	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF72 domain-containing protein	complement(1665438..1666484)	Alicycliphilus denitrificans BC	
ALIDE_RS07945	CDS	ALIDE_RS07945	NC_014910.1	1666485	1666889	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1666485..1666889)	Alicycliphilus denitrificans BC	
ALIDE_RS07950	CDS	ALIDE_RS07950	NC_014910.1	1666982	1669366	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Tex family protein	1666982..1669366	Alicycliphilus denitrificans BC	
ALIDE_RS07955	CDS	ALIDE_RS07955	NC_014910.1	1669382	1670356	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(1669382..1670356)	Alicycliphilus denitrificans BC	
ALIDE_RS07960	CDS	ALIDE_RS07960	NC_014910.1	1670379	1670777	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Zn-ribbon domain-containing OB-fold protein	complement(1670379..1670777)	Alicycliphilus denitrificans BC	
ALIDE_RS07965	CDS	ALIDE_RS07965	NC_014910.1	1670774	1671946	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiolase domain-containing protein	complement(1670774..1671946)	Alicycliphilus denitrificans BC	
ALIDE_RS07970	CDS	ALIDE_RS07970	NC_014910.1	1671952	1672935	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(1671952..1672935)	Alicycliphilus denitrificans BC	
ALIDE_RS07975	CDS	ALIDE_RS07975	NC_014910.1	1672973	1673773	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose 1-dehydrogenase	complement(1672973..1673773)	Alicycliphilus denitrificans BC	
ALIDE_RS07980	CDS	ALIDE_RS07980	NC_014910.1	1673800	1675356	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(1673800..1675356)	Alicycliphilus denitrificans BC	
ALIDE_RS07985	CDS	ALIDE_RS07985	NC_014910.1	1675362	1676315	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(1675362..1676315)	Alicycliphilus denitrificans BC	
ALIDE_RS07990	CDS	ALIDE_RS07990	NC_014910.1	1676445	1677452	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family DNA-binding transcriptional regulator	1676445..1677452	Alicycliphilus denitrificans BC	
ALIDE_RS07995	CDS	ALIDE_RS07995	NC_014910.1	1677543	1678394	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; citryl-CoA lyase	complement(1677543..1678394)	Alicycliphilus denitrificans BC	
ALIDE_RS08000	CDS	ALIDE_RS08000	NC_014910.1	1678391	1679593	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	complement(1678391..1679593)	Alicycliphilus denitrificans BC	
ALIDE_RS08005	CDS	ALIDE_RS08005	NC_014910.1	1679596	1680561	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(1679596..1680561)	Alicycliphilus denitrificans BC	
ALIDE_RS08010	CDS	ALIDE_RS08010	NC_014910.1	1680594	1681553	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(1680594..1681553)	Alicycliphilus denitrificans BC	
ALIDE_RS08015	CDS	ALIDE_RS08015	NC_014910.1	1681604	1682614	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidohydrolase family protein	complement(1681604..1682614)	Alicycliphilus denitrificans BC	
ALIDE_RS08020	CDS	ALIDE_RS08020	NC_014910.1	1682763	1683473	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	1682763..1683473	Alicycliphilus denitrificans BC	
ALIDE_RS08025	CDS	ALIDE_RS08025	NC_014910.1	1683538	1684362	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HDOD domain-containing protein	1683538..1684362	Alicycliphilus denitrificans BC	
ALIDE_RS08030	CDS	ALIDE_RS08030	NC_014910.1	1684458	1685333	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarylacetoacetate hydrolase	1684458..1685333	Alicycliphilus denitrificans BC	
ALIDE_RS08035	CDS	ALIDE_RS08035	NC_014910.1	1685346	1686329	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	1685346..1686329	Alicycliphilus denitrificans BC	
ALIDE_RS08040	CDS	ALIDE_RS08040	NC_014910.1	1686339	1687199	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YbgC/FadM family acyl-CoA thioesterase	1686339..1687199	Alicycliphilus denitrificans BC	
ALIDE_RS08045	CDS	ALIDE_RS08045	NC_014910.1	1687203	1687691	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; heme-binding protein	complement(1687203..1687691)	Alicycliphilus denitrificans BC	
ALIDE_RS08050	CDS	ALIDE_RS08050	NC_014910.1	1687809	1688453	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	complement(1687809..1688453)	Alicycliphilus denitrificans BC	
ALIDE_RS08055	CDS	ALIDE_RS08055	NC_014910.1	1688450	1689931	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	complement(1688450..1689931)	Alicycliphilus denitrificans BC	
ALIDE_RS08060	CDS	ALIDE_RS08060	NC_014910.1	1689954	1691147	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(1689954..1691147)	Alicycliphilus denitrificans BC	
ALIDE_RS08065	CDS	ALIDE_RS08065	NC_014910.1	1691140	1691631	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside deaminase	complement(1691140..1691631)	Alicycliphilus denitrificans BC	
ALIDE_RS08070	CDS	ALIDE_RS08070	NC_014910.1	1691665	1692606	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; folate-binding protein YgfZ	complement(1691665..1692606)	Alicycliphilus denitrificans BC	
ALIDE_RS08075	CDS	mltG	NC_014910.1	1692653	1693648	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; endolytic transglycosylase MltG	1692653..1693648	Alicycliphilus denitrificans BC	
ALIDE_RS08080	CDS	tmk	NC_014910.1	1693645	1694301	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dTMP kinase	1693645..1694301	Alicycliphilus denitrificans BC	
ALIDE_RS08085	CDS	ALIDE_RS08085	NC_014910.1	1694298	1695293	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit delta'	1694298..1695293	Alicycliphilus denitrificans BC	
ALIDE_RS08090	CDS	ALIDE_RS08090	NC_014910.1	1695310	1695669	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PilZ domain-containing protein	1695310..1695669	Alicycliphilus denitrificans BC	
ALIDE_RS08095	CDS	ALIDE_RS08095	NC_014910.1	1695731	1696540	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TatD family hydrolase	1695731..1696540	Alicycliphilus denitrificans BC	
ALIDE_RS08100	CDS	ALIDE_RS08100	NC_014910.1	1696537	1697217	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ankyrin repeat domain-containing protein	1696537..1697217	Alicycliphilus denitrificans BC	
ALIDE_RS24725	CDS	ALIDE_RS24725	NC_014910.1	1697505	1697657	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1697505..1697657	Alicycliphilus denitrificans BC	
ALIDE_RS08110	CDS	ALIDE_RS08110	NC_014910.1	1697689	1698906	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2325 domain-containing protein	1697689..1698906	Alicycliphilus denitrificans BC	
ALIDE_RS08115	CDS	ALIDE_RS08115	NC_014910.1	1698910	1699587	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	complement(1698910..1699587)	Alicycliphilus denitrificans BC	
ALIDE_RS08120	CDS	ALIDE_RS08120	NC_014910.1	1699851	1701098	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	1699851..1701098	Alicycliphilus denitrificans BC	
ALIDE_RS08125	CDS	ALIDE_RS08125	NC_014910.1	1701126	1701887	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-oxoprolinase subunit PxpA	1701126..1701887	Alicycliphilus denitrificans BC	
ALIDE_RS08130	CDS	ALIDE_RS08130	NC_014910.1	1701910	1702722	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative hydro-lyase	1701910..1702722	Alicycliphilus denitrificans BC	
ALIDE_RS08135	CDS	pxpB	NC_014910.1	1702730	1704331	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-oxoprolinase subunit PxpB	1702730..1704331	Alicycliphilus denitrificans BC	
ALIDE_RS08140	CDS	ALIDE_RS08140	NC_014910.1	1704337	1706067	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin carboxylase N-terminal domain-containing protein	1704337..1706067	Alicycliphilus denitrificans BC	
ALIDE_RS08145	CDS	msbA	NC_014910.1	1706130	1707911	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A export permease/ATP-binding protein MsbA	complement(1706130..1707911)	Alicycliphilus denitrificans BC	
ALIDE_RS08150	CDS	tolB	NC_014910.1	1708045	1709367	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Tol-Pal system beta propeller repeat protein TolB	1708045..1709367	Alicycliphilus denitrificans BC	
ALIDE_RS08155	CDS	pal	NC_014910.1	1709411	1709953	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-associated lipoprotein Pal	1709411..1709953	Alicycliphilus denitrificans BC	
ALIDE_RS08160	CDS	ybgF	NC_014910.1	1709965	1710741	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tol-pal system protein YbgF	1709965..1710741	Alicycliphilus denitrificans BC	
ALIDE_RS08165	CDS	ALIDE_RS08165	NC_014910.1	1710738	1711514	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA threonylcarbamoyladenosine dehydratase	1710738..1711514	Alicycliphilus denitrificans BC	
ALIDE_RS08175	CDS	ALIDE_RS08175	NC_014910.1	1711662	1712675	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine-type recombinase/integrase	complement(1711662..1712675)	Alicycliphilus denitrificans BC	
ALIDE_RS23365	CDS	ALIDE_RS23365	NC_014910.1	1713077	1713535	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1713077..1713535)	Alicycliphilus denitrificans BC	
ALIDE_RS08185	CDS	ALIDE_RS08185	NC_014910.1	1713987	1714727	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1713987..1714727)	Alicycliphilus denitrificans BC	
ALIDE_RS23370	CDS	ALIDE_RS23370	NC_014910.1	1714724	1714933	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1714724..1714933)	Alicycliphilus denitrificans BC	
ALIDE_RS08190	CDS	ALIDE_RS08190	NC_014910.1	1714923	1715348	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1714923..1715348)	Alicycliphilus denitrificans BC	
ALIDE_RS24045	CDS	ALIDE_RS24045	NC_014910.1	1715345	1715581	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1715345..1715581)	Alicycliphilus denitrificans BC	
ALIDE_RS08195	CDS	ALIDE_RS08195	NC_014910.1	1715612	1715956	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1715612..1715956)	Alicycliphilus denitrificans BC	
ALIDE_RS08200	CDS	ALIDE_RS08200	NC_014910.1	1716016	1716663	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lambda exonuclease family protein	complement(1716016..1716663)	Alicycliphilus denitrificans BC	
ALIDE_RS23010	CDS	ALIDE_RS23010	NC_014910.1	1716660	1717478	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ERF family protein	complement(1716660..1717478)	Alicycliphilus denitrificans BC	
ALIDE_RS08210	CDS	ALIDE_RS08210	NC_014910.1	1717688	1717945	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1717688..1717945)	Alicycliphilus denitrificans BC	
ALIDE_RS08215	CDS	ALIDE_RS08215	NC_014910.1	1717942	1718136	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1717942..1718136)	Alicycliphilus denitrificans BC	
ALIDE_RS24425	CDS	ALIDE_RS24425	NC_014910.1	1718133	1718276	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1718133..1718276)	Alicycliphilus denitrificans BC	
ALIDE_RS08220	CDS	ALIDE_RS08220	NC_014910.1	1718365	1718586	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1718365..1718586)	Alicycliphilus denitrificans BC	
ALIDE_RS08225	CDS	ALIDE_RS08225	NC_014910.1	1719473	1719718	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1719473..1719718)	Alicycliphilus denitrificans BC	
ALIDE_RS08230	CDS	ALIDE_RS08230	NC_014910.1	1719747	1720067	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1719747..1720067)	Alicycliphilus denitrificans BC	
ALIDE_RS08235	CDS	ALIDE_RS08235	NC_014910.1	1720538	1721392	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1720538..1721392	Alicycliphilus denitrificans BC	
ALIDE_RS08240	CDS	ALIDE_RS08240	NC_014910.1	1721458	1721697	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1721458..1721697	Alicycliphilus denitrificans BC	
ALIDE_RS23375	CDS	ALIDE_RS23375	NC_014910.1	1721814	1723001	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	1721814..1723001	Alicycliphilus denitrificans BC	
ALIDE_RS08245	CDS	ALIDE_RS08245	NC_014910.1	1723072	1723551	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thermonuclease family protein	complement(1723072..1723551)	Alicycliphilus denitrificans BC	
ALIDE_RS08250	CDS	ALIDE_RS08250	NC_014910.1	1723554	1724177	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PEP-CTERM sorting domain-containing protein	complement(1723554..1724177)	Alicycliphilus denitrificans BC	
ALIDE_RS08255	CDS	ALIDE_RS08255	NC_014910.1	1724340	1724954	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1724340..1724954)	Alicycliphilus denitrificans BC	
ALIDE_RS23015	CDS	ALIDE_RS23015	NC_014910.1	1725180	1725860	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; S24 family peptidase	complement(1725180..1725860)	Alicycliphilus denitrificans BC	
ALIDE_RS08265	CDS	ALIDE_RS08265	NC_014910.1	1725964	1726182	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix transcriptional regulator	1725964..1726182	Alicycliphilus denitrificans BC	
ALIDE_RS24050	CDS	ALIDE_RS24050	NC_014910.1	1726206	1726451	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1726206..1726451)	Alicycliphilus denitrificans BC	
ALIDE_RS08270	CDS	ALIDE_RS08270	NC_014910.1	1726611	1726979	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1726611..1726979	Alicycliphilus denitrificans BC	
ALIDE_RS23380	CDS	ALIDE_RS23380	NC_014910.1	1727169	1727369	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1727169..1727369	Alicycliphilus denitrificans BC	
ALIDE_RS23020	CDS	ALIDE_RS23020	NC_014910.1	1727402	1728274	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1727402..1728274	Alicycliphilus denitrificans BC	
ALIDE_RS08285	CDS	ALIDE_RS08285	NC_014910.1	1728271	1729656	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; replicative DNA helicase	1728271..1729656	Alicycliphilus denitrificans BC	
ALIDE_RS08290	CDS	ALIDE_RS08290	NC_014910.1	1729660	1730163	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1729660..1730163	Alicycliphilus denitrificans BC	
ALIDE_RS08295	CDS	ALIDE_RS08295	NC_014910.1	1730167	1730361	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1730167..1730361	Alicycliphilus denitrificans BC	
ALIDE_RS08300	CDS	ALIDE_RS08300	NC_014910.1	1730349	1730693	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; endodeoxyribonuclease RusA	1730349..1730693	Alicycliphilus denitrificans BC	
ALIDE_RS08305	CDS	ALIDE_RS08305	NC_014910.1	1730686	1731207	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1367 family protein	1730686..1731207	Alicycliphilus denitrificans BC	
ALIDE_RS08310	CDS	ALIDE_RS08310	NC_014910.1	1731204	1731704	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1731204..1731704	Alicycliphilus denitrificans BC	
ALIDE_RS08315	CDS	ALIDE_RS08315	NC_014910.1	1731694	1732185	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1731694..1732185	Alicycliphilus denitrificans BC	
ALIDE_RS08320	CDS	ALIDE_RS08320	NC_014910.1	1732241	1733017	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1732241..1733017	Alicycliphilus denitrificans BC	
ALIDE_RS08325	CDS	ALIDE_RS08325	NC_014910.1	1733020	1734627	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase	1733020..1734627	Alicycliphilus denitrificans BC	
ALIDE_RS08330	CDS	ALIDE_RS08330	NC_014910.1	1734634	1736901	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1734634..1736901	Alicycliphilus denitrificans BC	
ALIDE_RS08335	CDS	ALIDE_RS08335	NC_014910.1	1737089	1738075	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1737089..1738075	Alicycliphilus denitrificans BC	
ALIDE_RS08340	CDS	ALIDE_RS08340	NC_014910.1	1738144	1739433	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4043 family protein	1738144..1739433	Alicycliphilus denitrificans BC	
ALIDE_RS08345	CDS	ALIDE_RS08345	NC_014910.1	1739505	1739981	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1739505..1739981	Alicycliphilus denitrificans BC	
ALIDE_RS08350	CDS	ALIDE_RS08350	NC_014910.1	1740054	1740488	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1740054..1740488	Alicycliphilus denitrificans BC	
ALIDE_RS08355	CDS	ALIDE_RS08355	NC_014910.1	1740490	1741155	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF6682 family protein	1740490..1741155	Alicycliphilus denitrificans BC	
ALIDE_RS24430	CDS	ALIDE_RS24430	NC_014910.1	1741378	1743267	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1741378..1743267	Alicycliphilus denitrificans BC	
ALIDE_RS08365	CDS	ALIDE_RS08365	NC_014910.1	1743278	1744084	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1743278..1744084)	Alicycliphilus denitrificans BC	
ALIDE_RS08370	CDS	ALIDE_RS08370	NC_014910.1	1745291	1745614	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4325 domain-containing protein	1745291..1745614	Alicycliphilus denitrificans BC	
ALIDE_RS08375	CDS	ALIDE_RS08375	NC_014910.1	1745635	1746114	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1745635..1746114	Alicycliphilus denitrificans BC	
ALIDE_RS24065	CDS	ALIDE_RS24065	NC_014910.1	1746187	1746852	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1746187..1746852)	Alicycliphilus denitrificans BC	
ALIDE_RS08385	CDS	ALIDE_RS08385	NC_014910.1	1746806	1747702	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-processing protein DprA	complement(1746806..1747702)	Alicycliphilus denitrificans BC	
ALIDE_RS23025	CDS	ALIDE_RS23025	NC_014910.1	1747850	1756453	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PLxRFG domain-containing protein	1747850..1756453	Alicycliphilus denitrificans BC	
ALIDE_RS08395	CDS	ALIDE_RS08395	NC_014910.1	1756529	1756930	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1756529..1756930	Alicycliphilus denitrificans BC	
ALIDE_RS08400	CDS	ALIDE_RS08400	NC_014910.1	1756940	1758016	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1756940..1758016	Alicycliphilus denitrificans BC	
ALIDE_RS08405	CDS	ALIDE_RS08405	NC_014910.1	1758026	1758706	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1758026..1758706	Alicycliphilus denitrificans BC	
ALIDE_RS08410	CDS	ALIDE_RS08410	NC_014910.1	1758700	1759866	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1758700..1759866	Alicycliphilus denitrificans BC	
ALIDE_RS24070	CDS	ALIDE_RS24070	NC_014910.1	1759863	1762352	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1759863..1762352	Alicycliphilus denitrificans BC	
ALIDE_RS08420	CDS	ALIDE_RS08420	NC_014910.1	1762352	1762783	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1762352..1762783	Alicycliphilus denitrificans BC	
ALIDE_RS08425	CDS	ALIDE_RS08425	NC_014910.1	1762786	1764591	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1762786..1764591	Alicycliphilus denitrificans BC	
ALIDE_RS08430	CDS	ALIDE_RS08430	NC_014910.1	1764649	1765068	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1764649..1765068	Alicycliphilus denitrificans BC	
ALIDE_RS08435	CDS	ALIDE_RS08435	NC_014910.1	1765065	1765601	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1765065..1765601	Alicycliphilus denitrificans BC	
ALIDE_RS08440	CDS	ALIDE_RS08440	NC_014910.1	1765605	1766123	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1765605..1766123	Alicycliphilus denitrificans BC	
ALIDE_RS08445	CDS	ALIDE_RS08445	NC_014910.1	1766135	1767376	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1766135..1767376	Alicycliphilus denitrificans BC	
ALIDE_RS08450	CDS	ALIDE_RS08450	NC_014910.1	1767437	1767742	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; holin	1767437..1767742	Alicycliphilus denitrificans BC	
ALIDE_RS08455	CDS	ALIDE_RS08455	NC_014910.1	1767739	1768323	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme	1767739..1768323	Alicycliphilus denitrificans BC	
ALIDE_RS08460	CDS	ALIDE_RS08460	NC_014910.1	1768320	1768583	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1768320..1768583	Alicycliphilus denitrificans BC	
ALIDE_RS08465	CDS	ALIDE_RS08465	NC_014910.1	1768624	1769091	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1768624..1769091	Alicycliphilus denitrificans BC	
ALIDE_RS08470	CDS	ALIDE_RS08470	NC_014910.1	1769104	1769496	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system HicB family antitoxin	complement(1769104..1769496)	Alicycliphilus denitrificans BC	
ALIDE_RS08475	CDS	ALIDE_RS08475	NC_014910.1	1769524	1769706	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system HicA family toxin	complement(1769524..1769706)	Alicycliphilus denitrificans BC	
ALIDE_RS08480	CDS	ALIDE_RS08480	NC_014910.1	1769798	1770088	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1769798..1770088	Alicycliphilus denitrificans BC	
ALIDE_RS08485	CDS	ALIDE_RS08485	NC_014910.1	1770085	1770345	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1770085..1770345	Alicycliphilus denitrificans BC	
ALIDE_RS08490	CDS	ALIDE_RS08490	NC_014910.1	1770593	1770790	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1770593..1770790	Alicycliphilus denitrificans BC	
ALIDE_RS24075	CDS	ALIDE_RS24075	NC_014910.1	1771237	1771473	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1771237..1771473)	Alicycliphilus denitrificans BC	
ALIDE_RS08495	CDS	ALIDE_RS08495	NC_014910.1	1771476	1771712	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1771476..1771712)	Alicycliphilus denitrificans BC	
ALIDE_RS08500	CDS	ALIDE_RS08500	NC_014910.1	1771805	1772173	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; tyrosine-type recombinase/integrase	complement(1771805..1772173)	Alicycliphilus denitrificans BC	
ALIDE_RS24080	CDS	ALIDE_RS24080	NC_014910.1	1772450	1772701	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1772450..1772701)	Alicycliphilus denitrificans BC	
ALIDE_RS24735	CDS	ALIDE_RS24735	NC_014910.1	1773128	1773928	R	frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine-type recombinase/integrase	complement(1773128..1773928)	Alicycliphilus denitrificans BC	
ALIDE_RS08510	CDS	ALIDE_RS08510	NC_014910.1	1774166	1775152	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS5 family transposase	1774166..1775152	Alicycliphilus denitrificans BC	
ALIDE_RS23395	CDS	ALIDE_RS23395	NC_014910.1	1775921	1776865	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme inhibitor LprI family protein	1775921..1776865	Alicycliphilus denitrificans BC	
ALIDE_RS24740	CDS	ALIDE_RS24740	NC_014910.1	1777259	1777612	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1777259..1777612)	Alicycliphilus denitrificans BC	
ALIDE_RS08515	CDS	istB	NC_014910.1	1777672	1778493	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21-like element helper ATPase IstB	complement(1777672..1778493)	Alicycliphilus denitrificans BC	
ALIDE_RS08520	CDS	istA	NC_014910.1	1778490	1780001	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21 family transposase	complement(1778490..1780001)	Alicycliphilus denitrificans BC	
ALIDE_RS08525	CDS	ALIDE_RS08525	NC_014910.1	1780095	1781576	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3987 domain-containing protein	complement(1780095..1781576)	Alicycliphilus denitrificans BC	
ALIDE_RS23040	CDS	ALIDE_RS23040	NC_014910.1	1781573	1782496	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; toprim domain-containing protein	complement(1781573..1782496)	Alicycliphilus denitrificans BC	
ALIDE_RS23400	CDS	ALIDE_RS23400	NC_014910.1	1782579	1782818	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1782579..1782818)	Alicycliphilus denitrificans BC	
ALIDE_RS24100	CDS	ALIDE_RS24100	NC_014910.1	1782983	1783840	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1782983..1783840)	Alicycliphilus denitrificans BC	
ALIDE_RS08535	CDS	ALIDE_RS08535	NC_014910.1	1784162	1785499	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific integrase	complement(1784162..1785499)	Alicycliphilus denitrificans BC	
ALIDE_RS08540	CDS	ALIDE_RS08540	NC_014910.1	1785915	1786970	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	1785915..1786970	Alicycliphilus denitrificans BC	
ALIDE_RS23405	CDS	ALIDE_RS23405	NC_014910.1	1787069	1787221	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3096 domain-containing protein	1787069..1787221	Alicycliphilus denitrificans BC	
ALIDE_RS08545	CDS	ALIDE_RS08545	NC_014910.1	1787239	1788753	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transglycosylase SLT domain-containing protein	complement(1787239..1788753)	Alicycliphilus denitrificans BC	
ALIDE_RS08550	CDS	gloB	NC_014910.1	1788750	1789526	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyacylglutathione hydrolase	complement(1788750..1789526)	Alicycliphilus denitrificans BC	
ALIDE_RS08555	CDS	ALIDE_RS08555	NC_014910.1	1789525	1790307	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase domain-containing protein	1789525..1790307	Alicycliphilus denitrificans BC	
ALIDE_RS08560	CDS	rnhA	NC_014910.1	1790353	1790799	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease HI	1790353..1790799	Alicycliphilus denitrificans BC	
ALIDE_RS08565	CDS	ALIDE_RS08565	NC_014910.1	1790902	1792119	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxal phosphate-dependent aminotransferase	complement(1790902..1792119)	Alicycliphilus denitrificans BC	
ALIDE_RS08570	CDS	ALIDE_RS08570	NC_014910.1	1792116	1792748	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RraA family protein	complement(1792116..1792748)	Alicycliphilus denitrificans BC	
ALIDE_RS08575	CDS	ALIDE_RS08575	NC_014910.1	1792754	1793416	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RraA family protein	complement(1792754..1793416)	Alicycliphilus denitrificans BC	
ALIDE_RS08580	CDS	ALIDE_RS08580	NC_014910.1	1793567	1794493	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	1793567..1794493	Alicycliphilus denitrificans BC	
ALIDE_RS08585	CDS	ALIDE_RS08585	NC_014910.1	1794647	1795549	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein	1794647..1795549	Alicycliphilus denitrificans BC	
ALIDE_RS08590	CDS	ALIDE_RS08590	NC_014910.1	1795585	1796262	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RraA family protein	1795585..1796262	Alicycliphilus denitrificans BC	
ALIDE_RS08595	CDS	ALIDE_RS08595	NC_014910.1	1796342	1797319	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	1796342..1797319	Alicycliphilus denitrificans BC	
ALIDE_RS08600	CDS	ALIDE_RS08600	NC_014910.1	1797306	1797701	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1797306..1797701)	Alicycliphilus denitrificans BC	
ALIDE_RS08605	CDS	ALIDE_RS08605	NC_014910.1	1797698	1798024	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin family protein	complement(1797698..1798024)	Alicycliphilus denitrificans BC	
ALIDE_RS08610	CDS	glp	NC_014910.1	1798026	1799384	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; gephyrin-like molybdotransferase Glp	complement(1798026..1799384)	Alicycliphilus denitrificans BC	
ALIDE_RS08615	CDS	ALIDE_RS08615	NC_014910.1	1799371	1799946	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	complement(1799371..1799946)	Alicycliphilus denitrificans BC	
ALIDE_RS08620	CDS	mobA	NC_014910.1	1799943	1800575	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor guanylyltransferase MobA	complement(1799943..1800575)	Alicycliphilus denitrificans BC	
ALIDE_RS08625	CDS	moaA	NC_014910.1	1800579	1801730	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP 3',8-cyclase MoaA	complement(1800579..1801730)	Alicycliphilus denitrificans BC	
ALIDE_RS08630	CDS	ALIDE_RS08630	NC_014910.1	1801876	1802718	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein	1801876..1802718	Alicycliphilus denitrificans BC	
ALIDE_RS08635	CDS	ALIDE_RS08635	NC_014910.1	1802777	1803334	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2889 domain-containing protein	complement(1802777..1803334)	Alicycliphilus denitrificans BC	
ALIDE_RS08640	CDS	ALIDE_RS08640	NC_014910.1	1803344	1804777	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase family protein	complement(1803344..1804777)	Alicycliphilus denitrificans BC	
ALIDE_RS08645	CDS	ALIDE_RS08645	NC_014910.1	1804942	1807023	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium-translocating pyrophosphatase	complement(1804942..1807023)	Alicycliphilus denitrificans BC	
ALIDE_RS08650	CDS	ppa	NC_014910.1	1807238	1807771	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; inorganic diphosphatase	1807238..1807771	Alicycliphilus denitrificans BC	
ALIDE_RS08655	CDS	ALIDE_RS08655	NC_014910.1	1807973	1808479	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheW	1807973..1808479	Alicycliphilus denitrificans BC	
ALIDE_RS08660	CDS	ALIDE_RS08660	NC_014910.1	1808492	1810249	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	1808492..1810249	Alicycliphilus denitrificans BC	
ALIDE_RS08665	CDS	ALIDE_RS08665	NC_014910.1	1810246	1811469	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	complement(1810246..1811469)	Alicycliphilus denitrificans BC	
ALIDE_RS24745	CDS	ALIDE_RS24745	NC_014910.1	1811501	1811734	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; TonB-dependent receptor	complement(1811501..1811734)	Alicycliphilus denitrificans BC	
ALIDE_RS08675	CDS	ALIDE_RS08675	NC_014910.1	1811765	1813423	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD+ synthase	1811765..1813423	Alicycliphilus denitrificans BC	
ALIDE_RS08680	CDS	ALIDE_RS08680	NC_014910.1	1813474	1813812	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-II family nitrogen regulator	1813474..1813812	Alicycliphilus denitrificans BC	
ALIDE_RS08685	CDS	ALIDE_RS08685	NC_014910.1	1813822	1814415	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR00730 family Rossman fold protein	complement(1813822..1814415)	Alicycliphilus denitrificans BC	
ALIDE_RS08690	CDS	ALIDE_RS08690	NC_014910.1	1814408	1814806	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; diacylglycerol kinase	complement(1814408..1814806)	Alicycliphilus denitrificans BC	
ALIDE_RS08695	CDS	ALIDE_RS08695	NC_014910.1	1814869	1815441	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RDD family protein	complement(1814869..1815441)	Alicycliphilus denitrificans BC	
ALIDE_RS08700	CDS	ALIDE_RS08700	NC_014910.1	1815469	1816293	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3106 domain-containing protein	complement(1815469..1816293)	Alicycliphilus denitrificans BC	
ALIDE_RS08705	CDS	ALIDE_RS08705	NC_014910.1	1816317	1816778	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3619 family protein	complement(1816317..1816778)	Alicycliphilus denitrificans BC	
ALIDE_RS08710	CDS	ALIDE_RS08710	NC_014910.1	1816775	1817344	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor	complement(1816775..1817344)	Alicycliphilus denitrificans BC	
ALIDE_RS08715	CDS	ALIDE_RS08715	NC_014910.1	1817633	1819426	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 3 catalytic subunit	1817633..1819426	Alicycliphilus denitrificans BC	
ALIDE_RS08720	CDS	ilvN	NC_014910.1	1819614	1820105	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase small subunit	1819614..1820105	Alicycliphilus denitrificans BC	
ALIDE_RS08725	CDS	ilvC	NC_014910.1	1820174	1821190	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ketol-acid reductoisomerase	1820174..1821190	Alicycliphilus denitrificans BC	
ALIDE_RS08730	CDS	pssA	NC_014910.1	1821368	1822204	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diacylglycerol--serine O-phosphatidyltransferase	1821368..1822204	Alicycliphilus denitrificans BC	
ALIDE_RS08735	CDS	maiA	NC_014910.1	1822229	1822897	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; maleylacetoacetate isomerase	complement(1822229..1822897)	Alicycliphilus denitrificans BC	
ALIDE_RS08740	CDS	ALIDE_RS08740	NC_014910.1	1822908	1823921	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarylacetoacetate hydrolase family protein	complement(1822908..1823921)	Alicycliphilus denitrificans BC	
ALIDE_RS08745	CDS	ALIDE_RS08745	NC_014910.1	1823997	1825370	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(1823997..1825370)	Alicycliphilus denitrificans BC	
ALIDE_RS08750	CDS	ALIDE_RS08750	NC_014910.1	1825399	1825953	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	complement(1825399..1825953)	Alicycliphilus denitrificans BC	
ALIDE_RS08755	CDS	ALIDE_RS08755	NC_014910.1	1826086	1826994	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	1826086..1826994	Alicycliphilus denitrificans BC	
ALIDE_RS08760	CDS	leuA	NC_014910.1	1827202	1828869	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-isopropylmalate synthase	1827202..1828869	Alicycliphilus denitrificans BC	
ALIDE_RS08765	CDS	ALIDE_RS08765	NC_014910.1	1828905	1830446	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-isopropylmalate synthase	1828905..1830446	Alicycliphilus denitrificans BC	
ALIDE_RS08770	CDS	ALIDE_RS08770	NC_014910.1	1830562	1831656	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; serine hydrolase	1830562..1831656	Alicycliphilus denitrificans BC	
ALIDE_RS08775	CDS	ALIDE_RS08775	NC_014910.1	1831694	1832506	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	complement(1831694..1832506)	Alicycliphilus denitrificans BC	
ALIDE_RS08780	CDS	putP	NC_014910.1	1832590	1834092	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium/proline symporter PutP	complement(1832590..1834092)	Alicycliphilus denitrificans BC	
ALIDE_RS08785	CDS	putA	NC_014910.1	1834295	1838290	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	complement(1834295..1838290)	Alicycliphilus denitrificans BC	
ALIDE_RS08790	CDS	ALIDE_RS08790	NC_014910.1	1838436	1839677	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(1838436..1839677)	Alicycliphilus denitrificans BC	
ALIDE_RS08795	CDS	ALIDE_RS08795	NC_014910.1	1839693	1840784	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransferase	complement(1839693..1840784)	Alicycliphilus denitrificans BC	
ALIDE_RS08800	CDS	ALIDE_RS08800	NC_014910.1	1840841	1841560	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator	complement(1840841..1841560)	Alicycliphilus denitrificans BC	
ALIDE_RS08805	CDS	ALIDE_RS08805	NC_014910.1	1841750	1842529	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase	complement(1841750..1842529)	Alicycliphilus denitrificans BC	
ALIDE_RS08810	CDS	ALIDE_RS08810	NC_014910.1	1842540	1844060	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxyacyl-CoA dehydrogenase	complement(1842540..1844060)	Alicycliphilus denitrificans BC	
ALIDE_RS08815	CDS	ALIDE_RS08815	NC_014910.1	1844138	1846156	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1844138..1846156	Alicycliphilus denitrificans BC	
ALIDE_RS08820	CDS	ALIDE_RS08820	NC_014910.1	1846167	1847069	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine phosphate synthase	complement(1846167..1847069)	Alicycliphilus denitrificans BC	
ALIDE_RS08825	CDS	ALIDE_RS08825	NC_014910.1	1847070	1847873	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiazole synthase	complement(1847070..1847873)	Alicycliphilus denitrificans BC	
ALIDE_RS08830	CDS	thiS	NC_014910.1	1847889	1848086	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur carrier protein ThiS	complement(1847889..1848086)	Alicycliphilus denitrificans BC	
ALIDE_RS08835	CDS	thiO	NC_014910.1	1848083	1849201	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine oxidase ThiO	complement(1848083..1849201)	Alicycliphilus denitrificans BC	
ALIDE_RS08840	CDS	thiD	NC_014910.1	1849396	1850244	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	1849396..1850244	Alicycliphilus denitrificans BC	
ALIDE_RS08845	CDS	ALIDE_RS08845	NC_014910.1	1850255	1850731	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SH3 domain-containing protein	complement(1850255..1850731)	Alicycliphilus denitrificans BC	
ALIDE_RS08850	CDS	ALIDE_RS08850	NC_014910.1	1850818	1852089	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytosine permease	complement(1850818..1852089)	Alicycliphilus denitrificans BC	
ALIDE_RS08855	CDS	ALIDE_RS08855	NC_014910.1	1852086	1853132	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)/FAD-dependent oxidoreductase	complement(1852086..1853132)	Alicycliphilus denitrificans BC	
ALIDE_RS08860	CDS	fdxA	NC_014910.1	1853147	1853470	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin FdxA	complement(1853147..1853470)	Alicycliphilus denitrificans BC	
ALIDE_RS08865	CDS	ALIDE_RS08865	NC_014910.1	1853598	1854965	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein	complement(1853598..1854965)	Alicycliphilus denitrificans BC	
ALIDE_RS08870	CDS	cysD	NC_014910.1	1854965	1855921	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate adenylyltransferase subunit CysD	complement(1854965..1855921)	Alicycliphilus denitrificans BC	
ALIDE_RS08875	CDS	ALIDE_RS08875	NC_014910.1	1855987	1856610	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoadenosine phosphosulfate reductase family protein	complement(1855987..1856610)	Alicycliphilus denitrificans BC	
ALIDE_RS08880	CDS	ALIDE_RS08880	NC_014910.1	1856607	1857002	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF934 domain-containing protein	complement(1856607..1857002)	Alicycliphilus denitrificans BC	
ALIDE_RS08885	CDS	ALIDE_RS08885	NC_014910.1	1857032	1858819	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite/sulfite reductase	complement(1857032..1858819)	Alicycliphilus denitrificans BC	
ALIDE_RS08890	CDS	ALIDE_RS08890	NC_014910.1	1858846	1859649	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite exporter TauE/SafE family protein	complement(1858846..1859649)	Alicycliphilus denitrificans BC	
ALIDE_RS08895	CDS	mnmC	NC_014910.1	1859759	1861627	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	complement(1859759..1861627)	Alicycliphilus denitrificans BC	
ALIDE_RS08900	CDS	ALIDE_RS08900	NC_014910.1	1861639	1862304	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; trimeric intracellular cation channel family protein	complement(1861639..1862304)	Alicycliphilus denitrificans BC	
ALIDE_RS08905	CDS	ALIDE_RS08905	NC_014910.1	1862376	1862648	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative damage protection protein	complement(1862376..1862648)	Alicycliphilus denitrificans BC	
ALIDE_RS08910	CDS	ALIDE_RS08910	NC_014910.1	1862773	1863792	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter substrate-binding protein	1862773..1863792	Alicycliphilus denitrificans BC	
ALIDE_RS24565	CDS	ALIDE_RS24565	NC_014910.1	1863858	1864178	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1863858..1864178	Alicycliphilus denitrificans BC	
ALIDE_RS08920	CDS	ALIDE_RS08920	NC_014910.1	1864175	1864870	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	complement(1864175..1864870)	Alicycliphilus denitrificans BC	
ALIDE_RS08925	CDS	ALIDE_RS08925	NC_014910.1	1865089	1866654	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	1865089..1866654	Alicycliphilus denitrificans BC	
ALIDE_RS08930	CDS	ALIDE_RS08930	NC_014910.1	1866710	1867897	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid-transfer protein	1866710..1867897	Alicycliphilus denitrificans BC	
ALIDE_RS08935	CDS	ALIDE_RS08935	NC_014910.1	1867909	1868718	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	1867909..1868718	Alicycliphilus denitrificans BC	
ALIDE_RS08940	CDS	ALIDE_RS08940	NC_014910.1	1868756	1869952	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	1868756..1869952	Alicycliphilus denitrificans BC	
ALIDE_RS08945	CDS	ALIDE_RS08945	NC_014910.1	1870021	1870878	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	1870021..1870878	Alicycliphilus denitrificans BC	
ALIDE_RS08950	CDS	ALIDE_RS08950	NC_014910.1	1870875	1871843	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	1870875..1871843	Alicycliphilus denitrificans BC	
ALIDE_RS08955	CDS	ALIDE_RS08955	NC_014910.1	1871840	1872592	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1871840..1872592	Alicycliphilus denitrificans BC	
ALIDE_RS08960	CDS	ALIDE_RS08960	NC_014910.1	1872589	1873296	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	1872589..1873296	Alicycliphilus denitrificans BC	
ALIDE_RS08965	CDS	ALIDE_RS08965	NC_014910.1	1873340	1873933	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymuconolactone decarboxylase family protein	1873340..1873933	Alicycliphilus denitrificans BC	
ALIDE_RS08970	CDS	ALIDE_RS08970	NC_014910.1	1873970	1875571	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	1873970..1875571	Alicycliphilus denitrificans BC	
ALIDE_RS08975	CDS	ALIDE_RS08975	NC_014910.1	1875587	1876420	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	1875587..1876420	Alicycliphilus denitrificans BC	
ALIDE_RS24570	CDS	ALIDE_RS24570	NC_014910.1	1876507	1876701	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1876507..1876701	Alicycliphilus denitrificans BC	
ALIDE_RS08980	CDS	ALIDE_RS08980	NC_014910.1	1876852	1877952	D	internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.; LLM class flavin-dependent oxidoreductase	1876852..1877952	Alicycliphilus denitrificans BC	
ALIDE_RS08985	CDS	ALIDE_RS08985	NC_014910.1	1877952	1878719	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	1877952..1878719	Alicycliphilus denitrificans BC	
ALIDE_RS24750	CDS	ALIDE_RS24750	NC_014910.1	1878620	1879087	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	1878620..1879087	Alicycliphilus denitrificans BC	
ALIDE_RS08990	CDS	ALIDE_RS08990	NC_014910.1	1879117	1880035	D	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	1879117..1880035	Alicycliphilus denitrificans BC	
ALIDE_RS08995	CDS	ALIDE_RS08995	NC_014910.1	1880081	1880986	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transglycosylase SLT domain-containing protein	complement(1880081..1880986)	Alicycliphilus denitrificans BC	
ALIDE_RS23415	CDS	ALIDE_RS23415	NC_014910.1	1881411	1882130	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase arm-type DNA-binding domain-containing protein	1881411..1882130	Alicycliphilus denitrificans BC	
ALIDE_RS09010	CDS	ALIDE_RS09010	NC_014910.1	1882161	1883395	D	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	join(1882161..1882449,1882449..1883395)	Alicycliphilus denitrificans BC	
ALIDE_RS09015	CDS	ALIDE_RS09015	NC_014910.1	1883501	1883893	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1883501..1883893	Alicycliphilus denitrificans BC	
ALIDE_RS09020	CDS	ALIDE_RS09020	NC_014910.1	1884144	1884860	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1884144..1884860	Alicycliphilus denitrificans BC	
ALIDE_RS09025	CDS	ALIDE_RS09025	NC_014910.1	1885152	1885949	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1885152..1885949	Alicycliphilus denitrificans BC	
ALIDE_RS09030	CDS	merA	NC_014910.1	1886172	1887860	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; mercury(II) reductase	complement(1886172..1887860)	Alicycliphilus denitrificans BC	
ALIDE_RS09035	CDS	merP	NC_014910.1	1887871	1888149	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; mercury resistance system periplasmic binding protein MerP	complement(1887871..1888149)	Alicycliphilus denitrificans BC	
ALIDE_RS09040	CDS	merT	NC_014910.1	1888160	1888510	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; mercuric ion transporter MerT	complement(1888160..1888510)	Alicycliphilus denitrificans BC	
ALIDE_RS09045	CDS	merR	NC_014910.1	1888582	1888989	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Hg(II)-responsive transcriptional regulator	1888582..1888989	Alicycliphilus denitrificans BC	
ALIDE_RS09050	CDS	ALIDE_RS09050	NC_014910.1	1889304	1889855	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; STY4534 family ICE replication protein	1889304..1889855	Alicycliphilus denitrificans BC	
ALIDE_RS09055	CDS	ALIDE_RS09055	NC_014910.1	1889911	1890522	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3275 family protein	1889911..1890522	Alicycliphilus denitrificans BC	
ALIDE_RS09060	CDS	ALIDE_RS09060	NC_014910.1	1890612	1890977	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1890612..1890977	Alicycliphilus denitrificans BC	
ALIDE_RS09065	CDS	ALIDE_RS09065	NC_014910.1	1891062	1891712	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1891062..1891712	Alicycliphilus denitrificans BC	
ALIDE_RS09070	CDS	ALIDE_RS09070	NC_014910.1	1891777	1892886	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF6094 domain-containing protein	1891777..1892886	Alicycliphilus denitrificans BC	
ALIDE_RS09075	CDS	ALIDE_RS09075	NC_014910.1	1892988	1893293	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1892988..1893293	Alicycliphilus denitrificans BC	
ALIDE_RS09080	CDS	ALIDE_RS09080	NC_014910.1	1893393	1894529	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; DEAD/DEAH box helicase family protein	1893393..>1894529	Alicycliphilus denitrificans BC	
ALIDE_RS09085	CDS	ALIDE_RS09085	NC_014910.1	1894569	1895803	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	complement(join(1894569..1895515,1895515..1895803))	Alicycliphilus denitrificans BC	
ALIDE_RS09095	CDS	ALIDE_RS09095	NC_014910.1	1895855	1896214	D	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	<1895855..1896214	Alicycliphilus denitrificans BC	
ALIDE_RS09100	CDS	ALIDE_RS09100	NC_014910.1	1896262	1898115	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase arm-type DNA-binding domain-containing protein	complement(1896262..1898115)	Alicycliphilus denitrificans BC	
ALIDE_RS09110	CDS	ALIDE_RS09110	NC_014910.1	1898544	1899086	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Rrf2 family transcriptional regulator	complement(1898544..1899086)	Alicycliphilus denitrificans BC	
ALIDE_RS09115	CDS	ALIDE_RS09115	NC_014910.1	1899248	1899706	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(1899248..1899706)	Alicycliphilus denitrificans BC	
ALIDE_RS09120	CDS	ALIDE_RS09120	NC_014910.1	1899705	1899965	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1899705..1899965	Alicycliphilus denitrificans BC	
ALIDE_RS09125	CDS	asd	NC_014910.1	1899977	1900852	R	Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; archaetidylserine decarboxylase	complement(1899977..1900852)	Alicycliphilus denitrificans BC	
ALIDE_RS09130	CDS	ALIDE_RS09130	NC_014910.1	1901052	1902230	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HPP family protein	1901052..1902230	Alicycliphilus denitrificans BC	
ALIDE_RS09135	CDS	infA	NC_014910.1	1902478	1902738	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-1	1902478..1902738	Alicycliphilus denitrificans BC	
ALIDE_RS09145	CDS	ALIDE_RS09145	NC_014910.1	1903016	1904158	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor domain-containing diguanylate cyclase	1903016..1904158	Alicycliphilus denitrificans BC	
ALIDE_RS09150	CDS	ALIDE_RS09150	NC_014910.1	1904164	1904937	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heparan-alpha-glucosaminide N-acetyltransferase	1904164..1904937	Alicycliphilus denitrificans BC	
ALIDE_RS09155	CDS	ALIDE_RS09155	NC_014910.1	1904949	1905251	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; integration host factor subunit beta	complement(1904949..1905251)	Alicycliphilus denitrificans BC	
ALIDE_RS09160	CDS	rpsA	NC_014910.1	1905372	1907096	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S1	complement(1905372..1907096)	Alicycliphilus denitrificans BC	
ALIDE_RS09165	CDS	ALIDE_RS09165	NC_014910.1	1907238	1909262	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase	complement(1907238..1909262)	Alicycliphilus denitrificans BC	
ALIDE_RS09170	CDS	ALIDE_RS09170	NC_014910.1	1909262	1910146	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; prephenate dehydrogenase/arogenate dehydrogenase family protein	complement(1909262..1910146)	Alicycliphilus denitrificans BC	
ALIDE_RS09175	CDS	pheA	NC_014910.1	1910157	1911257	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; prephenate dehydratase	complement(1910157..1911257)	Alicycliphilus denitrificans BC	
ALIDE_RS09180	CDS	serC	NC_014910.1	1911376	1912485	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoserine/phosphohydroxythreonine transaminase	complement(1911376..1912485)	Alicycliphilus denitrificans BC	
ALIDE_RS09185	CDS	gyrA	NC_014910.1	1912552	1915191	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase subunit A	complement(1912552..1915191)	Alicycliphilus denitrificans BC	
ALIDE_RS09190	CDS	ompA	NC_014910.1	1915419	1916078	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein OmpA	1915419..1916078	Alicycliphilus denitrificans BC	
ALIDE_RS09195	CDS	ubiG	NC_014910.1	1916158	1916871	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	1916158..1916871	Alicycliphilus denitrificans BC	
ALIDE_RS09200	CDS	ALIDE_RS09200	NC_014910.1	1916868	1917545	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAD-IA family hydrolase	1916868..1917545	Alicycliphilus denitrificans BC	
ALIDE_RS09205	CDS	ALIDE_RS09205	NC_014910.1	1918163	1918834	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SOS response-associated peptidase	complement(1918163..1918834)	Alicycliphilus denitrificans BC	
ALIDE_RS09210	CDS	umuD	NC_014910.1	1918890	1919375	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; translesion error-prone DNA polymerase V autoproteolytic subunit	1918890..1919375	Alicycliphilus denitrificans BC	
ALIDE_RS09215	CDS	ALIDE_RS09215	NC_014910.1	1919375	1920661	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Y-family DNA polymerase	1919375..1920661	Alicycliphilus denitrificans BC	
ALIDE_RS09220	CDS	ALIDE_RS09220	NC_014910.1	1920658	1921122	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1920658..1921122)	Alicycliphilus denitrificans BC	
ALIDE_RS09225	CDS	ALIDE_RS09225	NC_014910.1	1921119	1921505	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1921119..1921505)	Alicycliphilus denitrificans BC	
ALIDE_RS09230	CDS	ALIDE_RS09230	NC_014910.1	1921502	1922881	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase family protein	complement(1921502..1922881)	Alicycliphilus denitrificans BC	
ALIDE_RS09235	CDS	ALIDE_RS09235	NC_014910.1	1922881	1923327	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2924 domain-containing protein	complement(1922881..1923327)	Alicycliphilus denitrificans BC	
ALIDE_RS09240	CDS	ALIDE_RS09240	NC_014910.1	1923324	1923518	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1923324..1923518)	Alicycliphilus denitrificans BC	
ALIDE_RS09245	CDS	ALIDE_RS09245	NC_014910.1	1923698	1923976	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix transcriptional regulator	1923698..1923976	Alicycliphilus denitrificans BC	
ALIDE_RS09250	CDS	ALIDE_RS09250	NC_014910.1	1923977	1924240	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1923977..1924240	Alicycliphilus denitrificans BC	
ALIDE_RS24755	CDS	ALIDE_RS24755	NC_014910.1	1924363	1924677	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine dehydratase beta chain	complement(<1924363..1924677)	Alicycliphilus denitrificans BC	
ALIDE_RS09255	CDS	ALIDE_RS09255	NC_014910.1	1924725	1926704	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydantoinase B/oxoprolinase family protein	complement(1924725..1926704)	Alicycliphilus denitrificans BC	
ALIDE_RS09260	CDS	ALIDE_RS09260	NC_014910.1	1926708	1927994	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydantoinase/oxoprolinase family protein	complement(1926708..1927994)	Alicycliphilus denitrificans BC	
ALIDE_RS09265	CDS	ALIDE_RS09265	NC_014910.1	1927947	1928375	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase	1927947..1928375	Alicycliphilus denitrificans BC	
ALIDE_RS09270	CDS	tnpB	NC_014910.1	1928372	1928704	D	TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS66 family insertion sequence element accessory protein TnpB	1928372..1928704	Alicycliphilus denitrificans BC	
ALIDE_RS09275	CDS	ALIDE_RS09275	NC_014910.1	1928787	1930301	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS66 family transposase	1928787..1930301	Alicycliphilus denitrificans BC	
ALIDE_RS09280	CDS	ALIDE_RS09280	NC_014910.1	1930328	1931323	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydantoinase/oxoprolinase family protein	complement(1930328..1931323)	Alicycliphilus denitrificans BC	
ALIDE_RS09285	CDS	ALIDE_RS09285	NC_014910.1	1931238	1932472	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	complement(join(1931238..1932184,1932184..1932472))	Alicycliphilus denitrificans BC	
ALIDE_RS23430	CDS	ALIDE_RS23430	NC_014910.1	1932372	1932785	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase	complement(1932372..1932785)	Alicycliphilus denitrificans BC	
ALIDE_RS23435	CDS	ALIDE_RS23435	NC_014910.1	1932782	1933102	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; (2Fe-2S)-binding protein	complement(1932782..1933102)	Alicycliphilus denitrificans BC	
ALIDE_RS09295	CDS	ALIDE_RS09295	NC_014910.1	1933026	1934186	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase	complement(1933026..1934186)	Alicycliphilus denitrificans BC	
ALIDE_RS09300	CDS	ALIDE_RS09300	NC_014910.1	1934540	1935460	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	1934540..1935460	Alicycliphilus denitrificans BC	
ALIDE_RS09305	CDS	ALIDE_RS09305	NC_014910.1	1935751	1936677	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminase	complement(1935751..1936677)	Alicycliphilus denitrificans BC	
ALIDE_RS09310	CDS	ALIDE_RS09310	NC_014910.1	1936681	1937868	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M20 aminoacylase family protein	complement(1936681..1937868)	Alicycliphilus denitrificans BC	
ALIDE_RS09315	CDS	ALIDE_RS09315	NC_014910.1	1937906	1939246	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(1937906..1939246)	Alicycliphilus denitrificans BC	
ALIDE_RS09320	CDS	ALIDE_RS09320	NC_014910.1	1939373	1940275	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	1939373..1940275	Alicycliphilus denitrificans BC	
ALIDE_RS24125	CDS	ALIDE_RS24125	NC_014910.1	1940405	1940635	R	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS1595 family transposase	complement(1940405..>1940635)	Alicycliphilus denitrificans BC	
ALIDE_RS23445	CDS	ALIDE_RS23445	NC_014910.1	1941276	1941770	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	complement(1941276..1941770)	Alicycliphilus denitrificans BC	
ALIDE_RS09335	CDS	ALIDE_RS09335	NC_014910.1	1941767	1942033	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1778 domain-containing protein	complement(1941767..1942033)	Alicycliphilus denitrificans BC	
ALIDE_RS09340	CDS	ALIDE_RS09340	NC_014910.1	1942264	1943520	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(1942264..1943520)	Alicycliphilus denitrificans BC	
ALIDE_RS09345	CDS	ALIDE_RS09345	NC_014910.1	1943704	1944495	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	1943704..1944495	Alicycliphilus denitrificans BC	
ALIDE_RS09350	CDS	ALIDE_RS09350	NC_014910.1	1944559	1944984	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PaaI family thioesterase	1944559..1944984	Alicycliphilus denitrificans BC	
ALIDE_RS09355	CDS	ALIDE_RS09355	NC_014910.1	1945078	1946094	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADP-dependent oxidoreductase	1945078..1946094	Alicycliphilus denitrificans BC	
ALIDE_RS09360	CDS	ALIDE_RS09360	NC_014910.1	1946171	1947094	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase family protein	1946171..1947094	Alicycliphilus denitrificans BC	
ALIDE_RS09365	CDS	ALIDE_RS09365	NC_014910.1	1947174	1947767	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1566 domain-containing protein	complement(1947174..1947767)	Alicycliphilus denitrificans BC	
ALIDE_RS09370	CDS	ALIDE_RS09370	NC_014910.1	1948325	1949659	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	1948325..1949659	Alicycliphilus denitrificans BC	
ALIDE_RS09375	CDS	ALIDE_RS09375	NC_014910.1	1949659	1951134	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribodipyrimidine photo-lyase	1949659..1951134	Alicycliphilus denitrificans BC	
ALIDE_RS09380	CDS	ALIDE_RS09380	NC_014910.1	1951139	1951597	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CopD family protein	complement(1951139..1951597)	Alicycliphilus denitrificans BC	
ALIDE_RS09385	CDS	metE	NC_014910.1	1951686	1954046	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	complement(1951686..1954046)	Alicycliphilus denitrificans BC	
ALIDE_RS09390	CDS	ALIDE_RS09390	NC_014910.1	1954155	1955081	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	1954155..1955081	Alicycliphilus denitrificans BC	
ALIDE_RS24575	CDS	ALIDE_RS24575	NC_014910.1	1955197	1955364	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	1955197..1955364	Alicycliphilus denitrificans BC	
ALIDE_RS24760	CDS	ALIDE_RS24760	NC_014910.1	1955483	1955857	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	1955483..1955857	Alicycliphilus denitrificans BC	
ALIDE_RS09395	CDS	ALIDE_RS09395	NC_014910.1	1955758	1957371	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY-associated TM helix domain-containing protein	1955758..1957371	Alicycliphilus denitrificans BC	
ALIDE_RS09405	CDS	ALIDE_RS09405	NC_014910.1	1957390	1957911	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3016 domain-containing protein	complement(1957390..1957911)	Alicycliphilus denitrificans BC	
ALIDE_RS09410	CDS	ALIDE_RS09410	NC_014910.1	1958018	1958878	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase/phosphoenolpyruvate mutase family protein	complement(1958018..1958878)	Alicycliphilus denitrificans BC	
ALIDE_RS09415	CDS	prpF	NC_014910.1	1959040	1960203	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-methylaconitate cis-trans isomerase PrpF	complement(1959040..1960203)	Alicycliphilus denitrificans BC	
ALIDE_RS09420	CDS	acnD	NC_014910.1	1960207	1962828	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe/S-dependent 2-methylisocitrate dehydratase AcnD	complement(1960207..1962828)	Alicycliphilus denitrificans BC	
ALIDE_RS09425	CDS	prpC	NC_014910.1	1962854	1964014	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-methylcitrate synthase	complement(1962854..1964014)	Alicycliphilus denitrificans BC	
ALIDE_RS09430	CDS	ALIDE_RS09430	NC_014910.1	1964011	1964406	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hotdog domain-containing protein	complement(1964011..1964406)	Alicycliphilus denitrificans BC	
ALIDE_RS09435	CDS	ALIDE_RS09435	NC_014910.1	1964509	1965969	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; short-chain fatty acyl-CoA regulator family protein	1964509..1965969	Alicycliphilus denitrificans BC	
ALIDE_RS09440	CDS	ALIDE_RS09440	NC_014910.1	1966081	1966989	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(1966081..1966989)	Alicycliphilus denitrificans BC	
ALIDE_RS09445	CDS	ALIDE_RS09445	NC_014910.1	1967119	1967502	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	1967119..1967502	Alicycliphilus denitrificans BC	
ALIDE_RS09450	CDS	ALIDE_RS09450	NC_014910.1	1967552	1968619	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase	1967552..1968619	Alicycliphilus denitrificans BC	
ALIDE_RS09455	CDS	ALIDE_RS09455	NC_014910.1	1968626	1969072	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding S4 domain-containing protein	complement(1968626..1969072)	Alicycliphilus denitrificans BC	
ALIDE_RS09460	CDS	ALIDE_RS09460	NC_014910.1	1969095	1970498	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase	complement(1969095..1970498)	Alicycliphilus denitrificans BC	
ALIDE_RS09465	CDS	ALIDE_RS09465	NC_014910.1	1970495	1971178	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	complement(1970495..1971178)	Alicycliphilus denitrificans BC	
ALIDE_RS09470	CDS	ALIDE_RS09470	NC_014910.1	1971321	1972280	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	1971321..1972280	Alicycliphilus denitrificans BC	
ALIDE_RS09475	CDS	ALIDE_RS09475	NC_014910.1	1972417	1972971	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter TctB family protein	1972417..1972971	Alicycliphilus denitrificans BC	
ALIDE_RS09480	CDS	ALIDE_RS09480	NC_014910.1	1972971	1974500	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter permease	1972971..1974500	Alicycliphilus denitrificans BC	
ALIDE_RS09485	CDS	ALIDE_RS09485	NC_014910.1	1974566	1976755	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxybutyrate oligomer hydrolase family protein	1974566..1976755	Alicycliphilus denitrificans BC	
ALIDE_RS09490	CDS	ALIDE_RS09490	NC_014910.1	1977073	1977660	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YSC84-related protein	complement(1977073..1977660)	Alicycliphilus denitrificans BC	
ALIDE_RS24580	CDS	ALIDE_RS24580	NC_014910.1	1977845	1978012	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(1977845..1978012)	Alicycliphilus denitrificans BC	
ALIDE_RS09495	CDS	ALIDE_RS09495	NC_014910.1	1978026	1979123	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YeeE/YedE thiosulfate transporter family protein	complement(1978026..1979123)	Alicycliphilus denitrificans BC	
ALIDE_RS09500	CDS	ALIDE_RS09500	NC_014910.1	1979218	1980162	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; rhodanese-like domain-containing protein	complement(1979218..1980162)	Alicycliphilus denitrificans BC	
ALIDE_RS09505	CDS	hemH	NC_014910.1	1980277	1981272	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ferrochelatase	complement(1980277..1981272)	Alicycliphilus denitrificans BC	
ALIDE_RS09510	CDS	ALIDE_RS09510	NC_014910.1	1981291	1982016	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAD-IA family hydrolase	1981291..1982016	Alicycliphilus denitrificans BC	
ALIDE_RS09515	CDS	ALIDE_RS09515	NC_014910.1	1981988	1984744	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation-transporting P-type ATPase	complement(1981988..1984744)	Alicycliphilus denitrificans BC	
ALIDE_RS09520	CDS	ALIDE_RS09520	NC_014910.1	1984923	1985729	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	complement(1984923..1985729)	Alicycliphilus denitrificans BC	
ALIDE_RS09525	CDS	ALIDE_RS09525	NC_014910.1	1985729	1987030	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; O-acetylhomoserine aminocarboxypropyltransferase	complement(1985729..1987030)	Alicycliphilus denitrificans BC	
ALIDE_RS09530	CDS	ALIDE_RS09530	NC_014910.1	1987146	1987601	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CBS domain-containing protein	1987146..1987601	Alicycliphilus denitrificans BC	
ALIDE_RS09535	CDS	aroC	NC_014910.1	1987695	1988789	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate synthase	1987695..1988789	Alicycliphilus denitrificans BC	
ALIDE_RS09540	CDS	nrdR	NC_014910.1	1988851	1989300	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator NrdR	complement(1988851..1989300)	Alicycliphilus denitrificans BC	
ALIDE_RS09545	CDS	glyA	NC_014910.1	1989326	1990570	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; serine hydroxymethyltransferase	complement(1989326..1990570)	Alicycliphilus denitrificans BC	
ALIDE_RS09550	CDS	ALIDE_RS09550	NC_014910.1	1990812	1991624	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic transglycosylase domain-containing protein	complement(1990812..1991624)	Alicycliphilus denitrificans BC	
ALIDE_RS09555	CDS	ALIDE_RS09555	NC_014910.1	1992342	1996100	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF748 domain-containing protein	1992342..1996100	Alicycliphilus denitrificans BC	
ALIDE_RS09560	CDS	ALIDE_RS09560	NC_014910.1	1996324	1998921	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF349 domain-containing protein	1996324..1998921	Alicycliphilus denitrificans BC	
ALIDE_RS09575	CDS	rnr	NC_014910.1	1999399	2001690	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease R	1999399..2001690	Alicycliphilus denitrificans BC	
ALIDE_RS09580	CDS	ALIDE_RS09580	NC_014910.1	2001713	2002468	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	2001713..2002468	Alicycliphilus denitrificans BC	
ALIDE_RS09585	CDS	ALIDE_RS09585	NC_014910.1	2002559	2003209	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome	2002559..2003209	Alicycliphilus denitrificans BC	
ALIDE_RS09590	CDS	ALIDE_RS09590	NC_014910.1	2003206	2004495	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c	2003206..2004495	Alicycliphilus denitrificans BC	
ALIDE_RS09595	CDS	ALIDE_RS09595	NC_014910.1	2004515	2004898	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin family protein	2004515..2004898	Alicycliphilus denitrificans BC	
ALIDE_RS09600	CDS	rimP	NC_014910.1	2005099	2005689	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome maturation factor RimP	2005099..2005689	Alicycliphilus denitrificans BC	
ALIDE_RS09605	CDS	nusA	NC_014910.1	2005758	2007242	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription termination factor NusA	2005758..2007242	Alicycliphilus denitrificans BC	
ALIDE_RS09610	CDS	infB	NC_014910.1	2007267	2010098	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-2	2007267..2010098	Alicycliphilus denitrificans BC	
ALIDE_RS09615	CDS	rbfA	NC_014910.1	2010102	2010482	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosome-binding factor RbfA	2010102..2010482	Alicycliphilus denitrificans BC	
ALIDE_RS09620	CDS	truB	NC_014910.1	2010475	2011479	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine(55) synthase TruB	2010475..2011479	Alicycliphilus denitrificans BC	
ALIDE_RS09625	CDS	typA	NC_014910.1	2011476	2013305	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; translational GTPase TypA	2011476..2013305	Alicycliphilus denitrificans BC	
ALIDE_RS09630	CDS	ALIDE_RS09630	NC_014910.1	2013373	2014251	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	complement(2013373..2014251)	Alicycliphilus denitrificans BC	
ALIDE_RS09635	CDS	ALIDE_RS09635	NC_014910.1	2014585	2015676	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase/isomerase family protein	2014585..2015676	Alicycliphilus denitrificans BC	
ALIDE_RS09640	CDS	ALIDE_RS09640	NC_014910.1	2015627	2016469	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-sigma factor	complement(2015627..2016469)	Alicycliphilus denitrificans BC	
ALIDE_RS09645	CDS	ALIDE_RS09645	NC_014910.1	2016494	2017018	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-70 family RNA polymerase sigma factor	complement(2016494..2017018)	Alicycliphilus denitrificans BC	
ALIDE_RS09650	CDS	ALIDE_RS09650	NC_014910.1	2017035	2017400	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2017035..2017400)	Alicycliphilus denitrificans BC	
ALIDE_RS09655	CDS	smpB	NC_014910.1	2017500	2017973	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SsrA-binding protein SmpB	complement(2017500..2017973)	Alicycliphilus denitrificans BC	
ALIDE_RS09660	CDS	ALIDE_RS09660	NC_014910.1	2018120	2018560	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system RatA family toxin	2018120..2018560	Alicycliphilus denitrificans BC	
ALIDE_RS09665	CDS	ALIDE_RS09665	NC_014910.1	2018570	2018896	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RnfH family protein	2018570..2018896	Alicycliphilus denitrificans BC	
ALIDE_RS09670	CDS	ALIDE_RS09670	NC_014910.1	2018905	2019408	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4124 domain-containing protein	complement(2018905..2019408)	Alicycliphilus denitrificans BC	
ALIDE_RS09675	CDS	guaB	NC_014910.1	2019502	2020977	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IMP dehydrogenase	2019502..2020977	Alicycliphilus denitrificans BC	
ALIDE_RS09680	CDS	guaA	NC_014910.1	2021051	2022667	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine-hydrolyzing GMP synthase	2021051..2022667	Alicycliphilus denitrificans BC	
ALIDE_RS09685	CDS	ALIDE_RS09685	NC_014910.1	2022969	2023823	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase arm-type DNA-binding domain-containing protein	2022969..>2023823	Alicycliphilus denitrificans BC	
ALIDE_RS09690	CDS	gltA	NC_014910.1	2023960	2025255	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate synthase	complement(2023960..2025255)	Alicycliphilus denitrificans BC	
ALIDE_RS09695	CDS	ALIDE_RS09695	NC_014910.1	2025302	2025574	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase assembly factor 2	complement(2025302..2025574)	Alicycliphilus denitrificans BC	
ALIDE_RS09700	CDS	ALIDE_RS09700	NC_014910.1	2025595	2026299	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase iron-sulfur subunit	complement(2025595..2026299)	Alicycliphilus denitrificans BC	
ALIDE_RS09705	CDS	sdhA	NC_014910.1	2026328	2028133	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase flavoprotein subunit	complement(2026328..2028133)	Alicycliphilus denitrificans BC	
ALIDE_RS09710	CDS	sdhD	NC_014910.1	2028184	2028549	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase, hydrophobic membrane anchor protein	complement(2028184..2028549)	Alicycliphilus denitrificans BC	
ALIDE_RS09715	CDS	sdhC	NC_014910.1	2028574	2029005	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase, cytochrome b556 subunit	complement(2028574..2029005)	Alicycliphilus denitrificans BC	
ALIDE_RS09720	CDS	ALIDE_RS09720	NC_014910.1	2029156	2029947	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	complement(2029156..2029947)	Alicycliphilus denitrificans BC	
ALIDE_RS09725	CDS	ALIDE_RS09725	NC_014910.1	2030130	2031116	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; malate dehydrogenase	2030130..2031116	Alicycliphilus denitrificans BC	
ALIDE_RS09730	CDS	tam	NC_014910.1	2031129	2031920	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; trans-aconitate 2-methyltransferase	2031129..2031920	Alicycliphilus denitrificans BC	
ALIDE_RS24440	CDS	ALIDE_RS24440	NC_014910.1	2031917	2032072	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2031917..2032072	Alicycliphilus denitrificans BC	
ALIDE_RS09735	CDS	ALIDE_RS09735	NC_014910.1	2032128	2032772	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2032128..2032772	Alicycliphilus denitrificans BC	
ALIDE_RS09740	CDS	acnB	NC_014910.1	2032890	2035481	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	2032890..2035481	Alicycliphilus denitrificans BC	
ALIDE_RS09750	CDS	ALIDE_RS09750	NC_014910.1	2035701	2036594	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(2035701..2036594)	Alicycliphilus denitrificans BC	
ALIDE_RS09755	CDS	ALIDE_RS09755	NC_014910.1	2036701	2038407	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	2036701..2038407	Alicycliphilus denitrificans BC	
ALIDE_RS09760	CDS	ALIDE_RS09760	NC_014910.1	2038514	2039506	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	2038514..2039506	Alicycliphilus denitrificans BC	
ALIDE_RS09765	CDS	ALIDE_RS09765	NC_014910.1	2039513	2040673	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	2039513..2040673	Alicycliphilus denitrificans BC	
ALIDE_RS09770	CDS	gorA	NC_014910.1	2040684	2042033	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione-disulfide reductase	complement(2040684..2042033)	Alicycliphilus denitrificans BC	
ALIDE_RS09775	CDS	ALIDE_RS09775	NC_014910.1	2042201	2042668	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; (2Fe-2S)-binding protein	2042201..2042668	Alicycliphilus denitrificans BC	
ALIDE_RS09780	CDS	ALIDE_RS09780	NC_014910.1	2042702	2045074	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase family protein molybdopterin-binding subunit	2042702..2045074	Alicycliphilus denitrificans BC	
ALIDE_RS09785	CDS	ALIDE_RS09785	NC_014910.1	2045088	2045879	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase family protein subunit M	2045088..2045879	Alicycliphilus denitrificans BC	
ALIDE_RS09790	CDS	ALIDE_RS09790	NC_014910.1	2046009	2046923	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MoxR family ATPase	2046009..2046923	Alicycliphilus denitrificans BC	
ALIDE_RS09795	CDS	ALIDE_RS09795	NC_014910.1	2046926	2048167	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VWA domain-containing protein	2046926..2048167	Alicycliphilus denitrificans BC	
ALIDE_RS09800	CDS	ALIDE_RS09800	NC_014910.1	2048181	2048732	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon monoxide dehydrogenase subunit G	2048181..2048732	Alicycliphilus denitrificans BC	
ALIDE_RS09805	CDS	ALIDE_RS09805	NC_014910.1	2048742	2049782	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; XdhC family protein	2048742..2049782	Alicycliphilus denitrificans BC	
ALIDE_RS09810	CDS	ALIDE_RS09810	NC_014910.1	2049782	2050429	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotidyltransferase family protein	2049782..2050429	Alicycliphilus denitrificans BC	
ALIDE_RS09815	CDS	ALIDE_RS09815	NC_014910.1	2050437	2051312	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2050437..2051312)	Alicycliphilus denitrificans BC	
ALIDE_RS09820	CDS	ALIDE_RS09820	NC_014910.1	2051415	2053439	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2051415..2053439)	Alicycliphilus denitrificans BC	
ALIDE_RS09825	CDS	ALIDE_RS09825	NC_014910.1	2053454	2054785	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)/FAD-dependent oxidoreductase	complement(2053454..2054785)	Alicycliphilus denitrificans BC	
ALIDE_RS09830	CDS	ALIDE_RS09830	NC_014910.1	2054791	2055756	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lysylphosphatidylglycerol synthase transmembrane domain-containing protein	complement(2054791..2055756)	Alicycliphilus denitrificans BC	
ALIDE_RS09835	CDS	ALIDE_RS09835	NC_014910.1	2055753	2056766	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 2 protein	complement(2055753..2056766)	Alicycliphilus denitrificans BC	
ALIDE_RS09840	CDS	yegQ	NC_014910.1	2056865	2058238	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA 5-hydroxyuridine modification protein YegQ	complement(2056865..2058238)	Alicycliphilus denitrificans BC	
ALIDE_RS09845	CDS	ALIDE_RS09845	NC_014910.1	2058287	2059657	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2058287..2059657)	Alicycliphilus denitrificans BC	
ALIDE_RS09850	CDS	ALIDE_RS09850	NC_014910.1	2059685	2060566	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(2059685..2060566)	Alicycliphilus denitrificans BC	
ALIDE_RS09855	CDS	ALIDE_RS09855	NC_014910.1	2060665	2061423	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite exporter TauE/SafE family protein	2060665..2061423	Alicycliphilus denitrificans BC	
ALIDE_RS09860	CDS	ALIDE_RS09860	NC_014910.1	2061443	2061976	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	complement(2061443..2061976)	Alicycliphilus denitrificans BC	
ALIDE_RS09865	CDS	ALIDE_RS09865	NC_014910.1	2061977	2063293	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	complement(2061977..2063293)	Alicycliphilus denitrificans BC	
ALIDE_RS09870	CDS	ALIDE_RS09870	NC_014910.1	2063290	2064099	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SURF1 family protein	complement(2063290..2064099)	Alicycliphilus denitrificans BC	
ALIDE_RS09875	CDS	cyoD	NC_014910.1	2064096	2064470	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome o ubiquinol oxidase subunit IV	complement(2064096..2064470)	Alicycliphilus denitrificans BC	
ALIDE_RS09880	CDS	cyoC	NC_014910.1	2064471	2065103	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome o ubiquinol oxidase subunit III	complement(2064471..2065103)	Alicycliphilus denitrificans BC	
ALIDE_RS09885	CDS	cyoB	NC_014910.1	2065096	2067102	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome o ubiquinol oxidase subunit I	complement(2065096..2067102)	Alicycliphilus denitrificans BC	
ALIDE_RS09890	CDS	cyoA	NC_014910.1	2067127	2068116	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinol oxidase subunit II	complement(2067127..2068116)	Alicycliphilus denitrificans BC	
ALIDE_RS09895	CDS	ALIDE_RS09895	NC_014910.1	2068418	2069749	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	2068418..2069749	Alicycliphilus denitrificans BC	
ALIDE_RS09900	CDS	tolA	NC_014910.1	2069858	2070820	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell envelope integrity protein TolA	complement(2069858..2070820)	Alicycliphilus denitrificans BC	
ALIDE_RS09905	CDS	ALIDE_RS09905	NC_014910.1	2070842	2071267	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ExbD/TolR family protein	complement(2070842..2071267)	Alicycliphilus denitrificans BC	
ALIDE_RS09910	CDS	tolQ	NC_014910.1	2071281	2071982	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein TolQ	complement(2071281..2071982)	Alicycliphilus denitrificans BC	
ALIDE_RS09915	CDS	ALIDE_RS09915	NC_014910.1	2071979	2072401	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YbgC/FadM family acyl-CoA thioesterase	complement(2071979..2072401)	Alicycliphilus denitrificans BC	
ALIDE_RS09920	CDS	ALIDE_RS09920	NC_014910.1	2072404	2073588	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxal phosphate-dependent aminotransferase	complement(2072404..2073588)	Alicycliphilus denitrificans BC	
ALIDE_RS09925	CDS	nusB	NC_014910.1	2073660	2074175	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antitermination factor NusB	complement(2073660..2074175)	Alicycliphilus denitrificans BC	
ALIDE_RS09930	CDS	ribH	NC_014910.1	2074202	2074666	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 6,7-dimethyl-8-ribityllumazine synthase	complement(2074202..2074666)	Alicycliphilus denitrificans BC	
ALIDE_RS09935	CDS	ribBA	NC_014910.1	2074670	2075791	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	complement(2074670..2075791)	Alicycliphilus denitrificans BC	
ALIDE_RS09940	CDS	ALIDE_RS09940	NC_014910.1	2075929	2076216	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2Fe-2S iron-sulfur cluster-binding protein	complement(2075929..2076216)	Alicycliphilus denitrificans BC	
ALIDE_RS09945	CDS	ALIDE_RS09945	NC_014910.1	2076574	2077455	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase	complement(2076574..2077455)	Alicycliphilus denitrificans BC	
ALIDE_RS09950	CDS	ALIDE_RS09950	NC_014910.1	2077586	2078494	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	2077586..2078494	Alicycliphilus denitrificans BC	
ALIDE_RS09955	CDS	gshA	NC_014910.1	2078602	2080131	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate--cysteine ligase	2078602..2080131	Alicycliphilus denitrificans BC	
ALIDE_RS09960	CDS	ALIDE_RS09960	NC_014910.1	2080177	2082360	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FUSC family membrane protein	2080177..2082360	Alicycliphilus denitrificans BC	
ALIDE_RS09965	CDS	ALIDE_RS09965	NC_014910.1	2082357	2082569	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2082357..2082569)	Alicycliphilus denitrificans BC	
ALIDE_RS09970	CDS	ALIDE_RS09970	NC_014910.1	2082667	2083032	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RidA family protein	complement(2082667..2083032)	Alicycliphilus denitrificans BC	
ALIDE_RS09975	CDS	ALIDE_RS09975	NC_014910.1	2083067	2084455	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD/NAD(P)-binding oxidoreductase	complement(2083067..2084455)	Alicycliphilus denitrificans BC	
ALIDE_RS09980	CDS	ALIDE_RS09980	NC_014910.1	2084457	2084801	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; (2Fe-2S)-binding protein	complement(2084457..2084801)	Alicycliphilus denitrificans BC	
ALIDE_RS09985	CDS	ALIDE_RS09985	NC_014910.1	2084791	2085927	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase	complement(2084791..2085927)	Alicycliphilus denitrificans BC	
ALIDE_RS09990	CDS	ALIDE_RS09990	NC_014910.1	2085972	2086955	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2085972..2086955)	Alicycliphilus denitrificans BC	
ALIDE_RS09995	CDS	ALIDE_RS09995	NC_014910.1	2087030	2087953	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(2087030..2087953)	Alicycliphilus denitrificans BC	
ALIDE_RS10000	CDS	ylqF	NC_014910.1	2088126	2089085	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome biogenesis GTPase YlqF	2088126..2089085	Alicycliphilus denitrificans BC	
ALIDE_RS10005	CDS	ALIDE_RS10005	NC_014910.1	2089167	2090996	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2089167..2090996)	Alicycliphilus denitrificans BC	
ALIDE_RS10010	CDS	ALIDE_RS10010	NC_014910.1	2091043	2091762	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pseudouridine synthase	complement(2091043..2091762)	Alicycliphilus denitrificans BC	
ALIDE_RS10015	CDS	ALIDE_RS10015	NC_014910.1	2091810	2092103	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2091810..2092103)	Alicycliphilus denitrificans BC	
ALIDE_RS10020	CDS	ALIDE_RS10020	NC_014910.1	2092206	2093132	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DHH family phosphoesterase	2092206..2093132	Alicycliphilus denitrificans BC	
ALIDE_RS10025	CDS	ALIDE_RS10025	NC_014910.1	2093183	2094418	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(2093183..2094418)	Alicycliphilus denitrificans BC	
ALIDE_RS10030	CDS	ALIDE_RS10030	NC_014910.1	2094460	2094885	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thermonuclease family protein	complement(2094460..2094885)	Alicycliphilus denitrificans BC	
ALIDE_RS10035	CDS	rarD	NC_014910.1	2094984	2095859	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; EamA family transporter RarD	2094984..2095859	Alicycliphilus denitrificans BC	
ALIDE_RS10040	CDS	ALIDE_RS10040	NC_014910.1	2095893	2096459	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pseudouridine synthase	complement(2095893..2096459)	Alicycliphilus denitrificans BC	
ALIDE_RS10045	CDS	ALIDE_RS10045	NC_014910.1	2096456	2097244	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M23 family metallopeptidase	complement(2096456..2097244)	Alicycliphilus denitrificans BC	
ALIDE_RS10050	CDS	ALIDE_RS10050	NC_014910.1	2097559	2098962	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate ammonia-lyase	2097559..2098962	Alicycliphilus denitrificans BC	
ALIDE_RS10055	CDS	ALIDE_RS10055	NC_014910.1	2099035	2099841	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; META and DUF4377 domain-containing protein	complement(2099035..2099841)	Alicycliphilus denitrificans BC	
ALIDE_RS10060	CDS	ALIDE_RS10060	NC_014910.1	2099907	2100446	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF924 family protein	complement(2099907..2100446)	Alicycliphilus denitrificans BC	
ALIDE_RS10065	CDS	ALIDE_RS10065	NC_014910.1	2100464	2102275	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine--tRNA ligase/YqeY domain fusion protein	complement(2100464..2102275)	Alicycliphilus denitrificans BC	
ALIDE_RS10070	CDS	ALIDE_RS10070	NC_014910.1	2102415	2102753	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2102415..2102753	Alicycliphilus denitrificans BC	
ALIDE_RS10075	CDS	aroQ	NC_014910.1	2102862	2103311	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II 3-dehydroquinate dehydratase	2102862..2103311	Alicycliphilus denitrificans BC	
ALIDE_RS10080	CDS	ALIDE_RS10080	NC_014910.1	2103305	2104198	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	2103305..2104198	Alicycliphilus denitrificans BC	
ALIDE_RS10085	CDS	arfB	NC_014910.1	2104195	2104620	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB	2104195..2104620	Alicycliphilus denitrificans BC	
ALIDE_RS10090	CDS	ALIDE_RS10090	NC_014910.1	2104722	2105558	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class III extradiol ring-cleavage dioxygenase	2104722..2105558	Alicycliphilus denitrificans BC	
ALIDE_RS10095	CDS	ALIDE_RS10095	NC_014910.1	2105588	2106250	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dienelactone hydrolase family protein	2105588..2106250	Alicycliphilus denitrificans BC	
ALIDE_RS10100	CDS	ALIDE_RS10100	NC_014910.1	2106431	2107309	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3014 domain-containing protein	2106431..2107309	Alicycliphilus denitrificans BC	
ALIDE_RS10105	CDS	ALIDE_RS10105	NC_014910.1	2107328	2107798	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Lrp/AsnC family transcriptional regulator	complement(2107328..2107798)	Alicycliphilus denitrificans BC	
ALIDE_RS10110	CDS	mdeB	NC_014910.1	2107902	2110529	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoglutarate dehydrogenase	2107902..2110529	Alicycliphilus denitrificans BC	
ALIDE_RS10115	CDS	ALIDE_RS10115	NC_014910.1	2110546	2111832	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidase	complement(2110546..2111832)	Alicycliphilus denitrificans BC	
ALIDE_RS10120	CDS	ALIDE_RS10120	NC_014910.1	2111841	2112704	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	complement(2111841..2112704)	Alicycliphilus denitrificans BC	
ALIDE_RS10125	CDS	ALIDE_RS10125	NC_014910.1	2112728	2113132	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Mor transcription activator family protein	complement(2112728..2113132)	Alicycliphilus denitrificans BC	
ALIDE_RS23045	CDS	ALIDE_RS23045	NC_014910.1	2113122	2113802	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein GemA	complement(2113122..2113802)	Alicycliphilus denitrificans BC	
ALIDE_RS10135	CDS	ALIDE_RS10135	NC_014910.1	2113870	2114142	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HU family DNA-binding protein	complement(2113870..2114142)	Alicycliphilus denitrificans BC	
ALIDE_RS10140	CDS	ALIDE_RS10140	NC_014910.1	2114317	2114556	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2114317..2114556)	Alicycliphilus denitrificans BC	
ALIDE_RS10145	CDS	ALIDE_RS10145	NC_014910.1	2114553	2114777	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2114553..2114777)	Alicycliphilus denitrificans BC	
ALIDE_RS10150	CDS	ALIDE_RS10150	NC_014910.1	2114774	2115160	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2528 family protein	complement(2114774..2115160)	Alicycliphilus denitrificans BC	
ALIDE_RS10155	CDS	ALIDE_RS10155	NC_014910.1	2115160	2115414	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2115160..2115414)	Alicycliphilus denitrificans BC	
ALIDE_RS10160	CDS	ALIDE_RS10160	NC_014910.1	2115560	2116108	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2115560..2116108)	Alicycliphilus denitrificans BC	
ALIDE_RS10165	CDS	ALIDE_RS10165	NC_014910.1	2116121	2116405	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2116121..2116405)	Alicycliphilus denitrificans BC	
ALIDE_RS10170	CDS	ALIDE_RS10170	NC_014910.1	2116402	2117022	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2116402..2117022)	Alicycliphilus denitrificans BC	
ALIDE_RS10175	CDS	ALIDE_RS10175	NC_014910.1	2117022	2117261	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2117022..2117261)	Alicycliphilus denitrificans BC	
ALIDE_RS24445	CDS	ALIDE_RS24445	NC_014910.1	2117261	2117413	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2117261..2117413)	Alicycliphilus denitrificans BC	
ALIDE_RS10180	CDS	ALIDE_RS10180	NC_014910.1	2117416	2118657	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AAA family ATPase	complement(2117416..2118657)	Alicycliphilus denitrificans BC	
ALIDE_RS10185	CDS	ALIDE_RS10185	NC_014910.1	2118668	2120461	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DDE-type integrase/transposase/recombinase	complement(2118668..2120461)	Alicycliphilus denitrificans BC	
ALIDE_RS10190	CDS	ALIDE_RS10190	NC_014910.1	2120475	2121539	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2120475..2121539)	Alicycliphilus denitrificans BC	
ALIDE_RS10195	CDS	ALIDE_RS10195	NC_014910.1	2121566	2121874	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2121566..2121874)	Alicycliphilus denitrificans BC	
ALIDE_RS10200	CDS	ALIDE_RS10200	NC_014910.1	2121871	2122155	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2121871..2122155)	Alicycliphilus denitrificans BC	
ALIDE_RS10205	CDS	ALIDE_RS10205	NC_014910.1	2122158	2122628	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2122158..2122628)	Alicycliphilus denitrificans BC	
ALIDE_RS10210	CDS	ALIDE_RS10210	NC_014910.1	2122733	2123170	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2122733..2123170	Alicycliphilus denitrificans BC	
ALIDE_RS10215	CDS	ALIDE_RS10215	NC_014910.1	2123414	2123713	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein	complement(2123414..2123713)	Alicycliphilus denitrificans BC	
ALIDE_RS10220	CDS	ALIDE_RS10220	NC_014910.1	2123745	2123942	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein	complement(2123745..2123942)	Alicycliphilus denitrificans BC	
ALIDE_RS23050	CDS	ALIDE_RS23050	NC_014910.1	2124038	2124544	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	2124038..2124544	Alicycliphilus denitrificans BC	
ALIDE_RS10230	CDS	ALIDE_RS10230	NC_014910.1	2124572	2125153	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2124572..2125153	Alicycliphilus denitrificans BC	
ALIDE_RS10235	CDS	ALIDE_RS10235	NC_014910.1	2125201	2125716	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2125201..2125716	Alicycliphilus denitrificans BC	
ALIDE_RS10240	CDS	ALIDE_RS10240	NC_014910.1	2125925	2126272	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative holin	2125925..2126272	Alicycliphilus denitrificans BC	
ALIDE_RS10245	CDS	ALIDE_RS10245	NC_014910.1	2126275	2126922	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transglycosylase SLT domain-containing protein	2126275..2126922	Alicycliphilus denitrificans BC	
ALIDE_RS10250	CDS	ALIDE_RS10250	NC_014910.1	2126919	2127131	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2126919..2127131	Alicycliphilus denitrificans BC	
ALIDE_RS10255	CDS	ALIDE_RS10255	NC_014910.1	2127178	2127711	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2127178..2127711	Alicycliphilus denitrificans BC	
ALIDE_RS10260	CDS	ALIDE_RS10260	NC_014910.1	2127704	2127961	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TraR/DksA C4-type zinc finger protein	2127704..2127961	Alicycliphilus denitrificans BC	
ALIDE_RS10265	CDS	ALIDE_RS10265	NC_014910.1	2127961	2128263	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2730 family protein	2127961..2128263	Alicycliphilus denitrificans BC	
ALIDE_RS10270	CDS	ALIDE_RS10270	NC_014910.1	2128260	2128553	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2128260..2128553	Alicycliphilus denitrificans BC	
ALIDE_RS10275	CDS	ALIDE_RS10275	NC_014910.1	2128557	2129099	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage protein Gp27 family protein	2128557..2129099	Alicycliphilus denitrificans BC	
ALIDE_RS24450	CDS	ALIDE_RS24450	NC_014910.1	2129096	2129239	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2129096..2129239	Alicycliphilus denitrificans BC	
ALIDE_RS10280	CDS	ALIDE_RS10280	NC_014910.1	2129236	2130600	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase family protein	2129236..2130600	Alicycliphilus denitrificans BC	
ALIDE_RS10285	CDS	ALIDE_RS10285	NC_014910.1	2130607	2132196	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF935 domain-containing protein	2130607..2132196	Alicycliphilus denitrificans BC	
ALIDE_RS10290	CDS	ALIDE_RS10290	NC_014910.1	2132306	2133544	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PBECR2 nuclease fold domain-containing protein	2132306..2133544	Alicycliphilus denitrificans BC	
ALIDE_RS10295	CDS	ALIDE_RS10295	NC_014910.1	2133664	2134227	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage virion morphogenesis protein	2133664..2134227	Alicycliphilus denitrificans BC	
ALIDE_RS10300	CDS	ALIDE_RS10300	NC_014910.1	2134276	2135439	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage protease	2134276..2135439	Alicycliphilus denitrificans BC	
ALIDE_RS10305	CDS	ALIDE_RS10305	NC_014910.1	2135463	2135873	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2135463..2135873	Alicycliphilus denitrificans BC	
ALIDE_RS10310	CDS	ALIDE_RS10310	NC_014910.1	2135901	2136794	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Mu-like prophage major head subunit gpT family protein	2135901..2136794	Alicycliphilus denitrificans BC	
ALIDE_RS10315	CDS	ALIDE_RS10315	NC_014910.1	2136819	2137121	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2136819..2137121	Alicycliphilus denitrificans BC	
ALIDE_RS10320	CDS	ALIDE_RS10320	NC_014910.1	2137202	2137738	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage protein Gp36 family protein	2137202..2137738	Alicycliphilus denitrificans BC	
ALIDE_RS10325	CDS	ALIDE_RS10325	NC_014910.1	2137745	2138179	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2137745..2138179	Alicycliphilus denitrificans BC	
ALIDE_RS10330	CDS	ALIDE_RS10330	NC_014910.1	2138176	2138400	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2138176..2138400	Alicycliphilus denitrificans BC	
ALIDE_RS10335	CDS	ALIDE_RS10335	NC_014910.1	2138397	2139359	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2138397..2139359	Alicycliphilus denitrificans BC	
ALIDE_RS10340	CDS	ALIDE_RS10340	NC_014910.1	2139404	2139895	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2139404..2139895	Alicycliphilus denitrificans BC	
ALIDE_RS10345	CDS	ALIDE_RS10345	NC_014910.1	2139958	2140269	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1799 domain-containing protein	2139958..2140269	Alicycliphilus denitrificans BC	
ALIDE_RS24915	CDS	ALIDE_RS24915	NC_014910.1	2140292	2145208	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail length tape measure family protein	2140292..2145208	Alicycliphilus denitrificans BC	
ALIDE_RS10355	CDS	ALIDE_RS10355	NC_014910.1	2145205	2146119	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2145205..2146119	Alicycliphilus denitrificans BC	
ALIDE_RS23060	CDS	ALIDE_RS23060	NC_014910.1	2146121	2146789	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2146121..2146789	Alicycliphilus denitrificans BC	
ALIDE_RS10365	CDS	ALIDE_RS10365	NC_014910.1	2146806	2147261	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2146806..2147261	Alicycliphilus denitrificans BC	
ALIDE_RS10370	CDS	ALIDE_RS10370	NC_014910.1	2147261	2147740	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2147261..2147740	Alicycliphilus denitrificans BC	
ALIDE_RS10375	CDS	ALIDE_RS10375	NC_014910.1	2147737	2148072	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2147737..2148072	Alicycliphilus denitrificans BC	
ALIDE_RS10380	CDS	ALIDE_RS10380	NC_014910.1	2148069	2148320	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2148069..2148320	Alicycliphilus denitrificans BC	
ALIDE_RS10385	CDS	ALIDE_RS10385	NC_014910.1	2148334	2148867	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2148334..2148867	Alicycliphilus denitrificans BC	
ALIDE_RS24455	CDS	ALIDE_RS24455	NC_014910.1	2148871	2149548	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2148871..2149548	Alicycliphilus denitrificans BC	
ALIDE_RS10395	CDS	ALIDE_RS10395	NC_014910.1	2149688	2150776	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS5-like element ISDisp1 family transposase	complement(2149688..2150776)	Alicycliphilus denitrificans BC	
ALIDE_RS10400	CDS	ALIDE_RS10400	NC_014910.1	2151028	2151564	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4376 domain-containing protein	2151028..2151564	Alicycliphilus denitrificans BC	
ALIDE_RS10405	CDS	ALIDE_RS10405	NC_014910.1	2151678	2151911	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(<2151678..2151911)	Alicycliphilus denitrificans BC	
ALIDE_RS10410	CDS	ALIDE_RS10410	NC_014910.1	2152022	2152939	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	2152022..2152939	Alicycliphilus denitrificans BC	
ALIDE_RS10415	CDS	ALIDE_RS10415	NC_014910.1	2152974	2153753	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FadR/GntR family transcriptional regulator	2152974..2153753	Alicycliphilus denitrificans BC	
ALIDE_RS24460	CDS	ALIDE_RS24460	NC_014910.1	2153770	2153907	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2153770..2153907)	Alicycliphilus denitrificans BC	
ALIDE_RS10420	CDS	ALIDE_RS10420	NC_014910.1	2153906	2155228	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	2153906..2155228	Alicycliphilus denitrificans BC	
ALIDE_RS10425	CDS	ltnD	NC_014910.1	2155240	2156130	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; L-threonate dehydrogenase	2155240..2156130	Alicycliphilus denitrificans BC	
ALIDE_RS10430	CDS	denD	NC_014910.1	2156201	2157214	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-erythronate dehydrogenase	2156201..2157214	Alicycliphilus denitrificans BC	
ALIDE_RS10435	CDS	otnK	NC_014910.1	2157218	2158480	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxo-tetronate kinase	2157218..2158480	Alicycliphilus denitrificans BC	
ALIDE_RS10440	CDS	ALIDE_RS10440	NC_014910.1	2158477	2159142	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldolase	2158477..2159142	Alicycliphilus denitrificans BC	
ALIDE_RS10445	CDS	otnI	NC_014910.1	2159152	2159961	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxo-tetronate isomerase	2159152..2159961	Alicycliphilus denitrificans BC	
ALIDE_RS10450	CDS	ALIDE_RS10450	NC_014910.1	2160003	2160836	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M90 family metallopeptidase	complement(2160003..2160836)	Alicycliphilus denitrificans BC	
ALIDE_RS10455	CDS	ALIDE_RS10455	NC_014910.1	2160841	2161623	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-2,3-diacylglucosamine diphosphatase	complement(2160841..2161623)	Alicycliphilus denitrificans BC	
ALIDE_RS10460	CDS	ALIDE_RS10460	NC_014910.1	2161628	2162155	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidylprolyl isomerase	complement(2161628..2162155)	Alicycliphilus denitrificans BC	
ALIDE_RS10465	CDS	ALIDE_RS10465	NC_014910.1	2162177	2162764	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidylprolyl isomerase	complement(2162177..2162764)	Alicycliphilus denitrificans BC	
ALIDE_RS10470	CDS	ALIDE_RS10470	NC_014910.1	2162761	2164131	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-transpeptidase family protein	complement(2162761..2164131)	Alicycliphilus denitrificans BC	
ALIDE_RS10475	CDS	ALIDE_RS10475	NC_014910.1	2164210	2165298	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tetratricopeptide repeat protein	complement(2164210..2165298)	Alicycliphilus denitrificans BC	
ALIDE_RS10480	CDS	cysS	NC_014910.1	2165522	2166898	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine--tRNA ligase	2165522..2166898	Alicycliphilus denitrificans BC	
ALIDE_RS10485	CDS	ALIDE_RS10485	NC_014910.1	2166944	2167591	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-3-methyladenine glycosylase	2166944..2167591	Alicycliphilus denitrificans BC	
ALIDE_RS10490	CDS	ALIDE_RS10490	NC_014910.1	2167643	2168620	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase carboxyltransferase subunit alpha	2167643..2168620	Alicycliphilus denitrificans BC	
ALIDE_RS10495	CDS	tilS	NC_014910.1	2168688	2169695	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA lysidine(34) synthetase TilS	2168688..2169695	Alicycliphilus denitrificans BC	
ALIDE_RS10500	CDS	ALIDE_RS10500	NC_014910.1	2169732	2171003	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate kinase	2169732..2171003	Alicycliphilus denitrificans BC	
ALIDE_RS10505	CDS	ALIDE_RS10505	NC_014910.1	2171050	2172405	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chloride channel protein	complement(2171050..2172405)	Alicycliphilus denitrificans BC	
ALIDE_RS10515	CDS	ALIDE_RS10515	NC_014910.1	2172856	2173095	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	2172856..>2173095	Alicycliphilus denitrificans BC	
ALIDE_RS10520	CDS	ALIDE_RS10520	NC_014910.1	2173137	2174371	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	complement(join(2173137..2174083,2174083..2174371))	Alicycliphilus denitrificans BC	
ALIDE_RS10530	CDS	ALIDE_RS10530	NC_014910.1	2174428	2174787	D	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	<2174428..2174787	Alicycliphilus denitrificans BC	
ALIDE_RS10535	CDS	ALIDE_RS10535	NC_014910.1	2174784	2175935	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	2174784..2175935	Alicycliphilus denitrificans BC	
ALIDE_RS10540	CDS	ALIDE_RS10540	NC_014910.1	2175932	2177131	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	2175932..2177131	Alicycliphilus denitrificans BC	
ALIDE_RS10545	CDS	ALIDE_RS10545	NC_014910.1	2177136	2177846	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	2177136..2177846	Alicycliphilus denitrificans BC	
ALIDE_RS10550	CDS	ALIDE_RS10550	NC_014910.1	2177917	2179245	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein transglycosylase	complement(2177917..2179245)	Alicycliphilus denitrificans BC	
ALIDE_RS10555	CDS	sbcB	NC_014910.1	2179292	2180728	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease I	2179292..2180728	Alicycliphilus denitrificans BC	
ALIDE_RS10560	CDS	ALIDE_RS10560	NC_014910.1	2180700	2181548	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent protein deacetylase	2180700..2181548	Alicycliphilus denitrificans BC	
ALIDE_RS10565	CDS	ALIDE_RS10565	NC_014910.1	2181681	2184044	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AI-2E family transporter	2181681..2184044	Alicycliphilus denitrificans BC	
ALIDE_RS10570	CDS	ALIDE_RS10570	NC_014910.1	2184026	2184595	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	complement(2184026..2184595)	Alicycliphilus denitrificans BC	
ALIDE_RS10575	CDS	upp	NC_014910.1	2184592	2185221	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil phosphoribosyltransferase	complement(2184592..2185221)	Alicycliphilus denitrificans BC	
ALIDE_RS10580	CDS	ALIDE_RS10580	NC_014910.1	2185310	2186296	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; threo-3-hydroxy-L-aspartate ammonia-lyase	complement(2185310..2186296)	Alicycliphilus denitrificans BC	
ALIDE_RS10585	CDS	ALIDE_RS10585	NC_014910.1	2186547	2187251	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YebC/PmpR family DNA-binding transcriptional regulator	2186547..2187251	Alicycliphilus denitrificans BC	
ALIDE_RS24585	CDS	ALIDE_RS24585	NC_014910.1	2187394	2187600	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2187394..2187600	Alicycliphilus denitrificans BC	
ALIDE_RS10595	CDS	ccoG	NC_014910.1	2187927	2189339	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c oxidase accessory protein CcoG	2187927..2189339	Alicycliphilus denitrificans BC	
ALIDE_RS10600	CDS	ALIDE_RS10600	NC_014910.1	2189366	2190784	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome ubiquinol oxidase subunit I	2189366..2190784	Alicycliphilus denitrificans BC	
ALIDE_RS10605	CDS	cydB	NC_014910.1	2190788	2191798	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome d ubiquinol oxidase subunit II	2190788..2191798	Alicycliphilus denitrificans BC	
ALIDE_RS23455	CDS	ALIDE_RS23455	NC_014910.1	2191798	2191944	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2474 domain-containing protein	2191798..2191944	Alicycliphilus denitrificans BC	
ALIDE_RS10610	CDS	ALIDE_RS10610	NC_014910.1	2192003	2192356	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2192003..2192356)	Alicycliphilus denitrificans BC	
ALIDE_RS10615	CDS	ALIDE_RS10615	NC_014910.1	2192365	2193060	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LrgB family protein	complement(2192365..2193060)	Alicycliphilus denitrificans BC	
ALIDE_RS10620	CDS	ALIDE_RS10620	NC_014910.1	2193057	2193458	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CidA/LrgA family protein	complement(2193057..2193458)	Alicycliphilus denitrificans BC	
ALIDE_RS10625	CDS	ALIDE_RS10625	NC_014910.1	2193667	2195094	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PLP-dependent aminotransferase family protein	2193667..2195094	Alicycliphilus denitrificans BC	
ALIDE_RS10630	CDS	ALIDE_RS10630	NC_014910.1	2195183	2195884	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione binding-like protein	complement(2195183..2195884)	Alicycliphilus denitrificans BC	
ALIDE_RS10635	CDS	ALIDE_RS10635	NC_014910.1	2195955	2197460	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helicase HerA-like domain-containing protein	complement(2195955..2197460)	Alicycliphilus denitrificans BC	
ALIDE_RS10640	CDS	ALIDE_RS10640	NC_014910.1	2197533	2198252	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YebC/PmpR family DNA-binding transcriptional regulator	2197533..2198252	Alicycliphilus denitrificans BC	
ALIDE_RS10645	CDS	purD	NC_014910.1	2198249	2199535	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylamine--glycine ligase	2198249..2199535	Alicycliphilus denitrificans BC	
ALIDE_RS10650	CDS	hemF	NC_014910.1	2199535	2200461	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; oxygen-dependent coproporphyrinogen oxidase	2199535..2200461	Alicycliphilus denitrificans BC	
ALIDE_RS10655	CDS	rsfS	NC_014910.1	2200545	2201210	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome silencing factor	2200545..2201210	Alicycliphilus denitrificans BC	
ALIDE_RS10660	CDS	rlmH	NC_014910.1	2201210	2201677	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	2201210..2201677	Alicycliphilus denitrificans BC	
ALIDE_RS10665	CDS	ALIDE_RS10665	NC_014910.1	2201745	2202350	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Maf family protein	2201745..2202350	Alicycliphilus denitrificans BC	
ALIDE_RS10670	CDS	ALIDE_RS10670	NC_014910.1	2202356	2203075	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator	complement(2202356..2203075)	Alicycliphilus denitrificans BC	
ALIDE_RS10675	CDS	ALIDE_RS10675	NC_014910.1	2203282	2204877	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase	complement(2203282..2204877)	Alicycliphilus denitrificans BC	
ALIDE_RS10680	CDS	nirJ	NC_014910.1	2204870	2206090	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; heme d1 biosynthesis radical SAM protein NirJ	complement(2204870..2206090)	Alicycliphilus denitrificans BC	
ALIDE_RS10685	CDS	ALIDE_RS10685	NC_014910.1	2206093	2206572	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Lrp/AsnC family transcriptional regulator	complement(2206093..2206572)	Alicycliphilus denitrificans BC	
ALIDE_RS24775	CDS	ALIDE_RS24775	NC_014910.1	2206553	2207038	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Lrp/AsnC family transcriptional regulator	complement(2206553..2207038)	Alicycliphilus denitrificans BC	
ALIDE_RS24780	CDS	ALIDE_RS24780	NC_014910.1	2207123	2207950	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; Lrp/AsnC family transcriptional regulator	complement(<2207123..2207950)	Alicycliphilus denitrificans BC	
ALIDE_RS10695	CDS	ALIDE_RS10695	NC_014910.1	2208059	2209267	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome D1 domain-containing protein	complement(2208059..2209267)	Alicycliphilus denitrificans BC	
ALIDE_RS10700	CDS	ALIDE_RS10700	NC_014910.1	2209264	2209617	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome	complement(2209264..2209617)	Alicycliphilus denitrificans BC	
ALIDE_RS10705	CDS	ALIDE_RS10705	NC_014910.1	2209640	2211364	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase	complement(2209640..2211364)	Alicycliphilus denitrificans BC	
ALIDE_RS10710	CDS	cobA	NC_014910.1	2211576	2212403	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen-III C-methyltransferase	2211576..2212403	Alicycliphilus denitrificans BC	
ALIDE_RS10715	CDS	rng	NC_014910.1	2212485	2213972	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease G	2212485..2213972	Alicycliphilus denitrificans BC	
ALIDE_RS10720	CDS	ALIDE_RS10720	NC_014910.1	2214148	2215833	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GGDEF domain-containing protein	2214148..2215833	Alicycliphilus denitrificans BC	
ALIDE_RS10725	CDS	ALIDE_RS10725	NC_014910.1	2215767	2216471	R	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(2215767..>2216471)	Alicycliphilus denitrificans BC	
ALIDE_RS10730	CDS	ALIDE_RS10730	NC_014910.1	2216609	2217760	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxal phosphate-dependent aminotransferase	complement(2216609..2217760)	Alicycliphilus denitrificans BC	
ALIDE_RS10735	CDS	ALIDE_RS10735	NC_014910.1	2217902	2218843	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CysB family HTH-type transcriptional regulator	complement(2217902..2218843)	Alicycliphilus denitrificans BC	
ALIDE_RS10740	CDS	ALIDE_RS10740	NC_014910.1	2218887	2219267	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CbiX/SirB N-terminal domain-containing protein	complement(2218887..2219267)	Alicycliphilus denitrificans BC	
ALIDE_RS10745	CDS	lptG	NC_014910.1	2219301	2220401	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS export ABC transporter permease LptG	complement(2219301..2220401)	Alicycliphilus denitrificans BC	
ALIDE_RS10750	CDS	lptF	NC_014910.1	2220398	2221492	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS export ABC transporter permease LptF	complement(2220398..2221492)	Alicycliphilus denitrificans BC	
ALIDE_RS10755	CDS	ALIDE_RS10755	NC_014910.1	2221516	2223009	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; leucyl aminopeptidase	2221516..2223009	Alicycliphilus denitrificans BC	
ALIDE_RS10760	CDS	ALIDE_RS10760	NC_014910.1	2223009	2223473	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit chi	2223009..2223473	Alicycliphilus denitrificans BC	
ALIDE_RS10765	CDS	ALIDE_RS10765	NC_014910.1	2223473	2223874	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2223473..2223874	Alicycliphilus denitrificans BC	
ALIDE_RS10770	CDS	ALIDE_RS10770	NC_014910.1	2224003	2225136	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter substrate-binding protein	2224003..2225136	Alicycliphilus denitrificans BC	
ALIDE_RS10775	CDS	ALIDE_RS10775	NC_014910.1	2225227	2226234	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-2-hydroxyacid dehydrogenase family protein	complement(2225227..2226234)	Alicycliphilus denitrificans BC	
ALIDE_RS24590	CDS	ALIDE_RS24590	NC_014910.1	2227138	2227401	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2227138..2227401	Alicycliphilus denitrificans BC	
ALIDE_RS23470	CDS	ALIDE_RS23470	NC_014910.1	2227614	2227949	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	complement(2227614..2227949)	Alicycliphilus denitrificans BC	
ALIDE_RS10785	CDS	ALIDE_RS10785	NC_014910.1	2228037	2228285	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M20/M25/M40 family metallo-hydrolase	complement(2228037..2228285)	Alicycliphilus denitrificans BC	
ALIDE_RS24465	CDS	ALIDE_RS24465	NC_014910.1	2228379	2228543	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2228379..2228543	Alicycliphilus denitrificans BC	
ALIDE_RS10795	CDS	ALIDE_RS10795	NC_014910.1	2228723	2229181	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2228723..2229181	Alicycliphilus denitrificans BC	
ALIDE_RS10800	CDS	ALIDE_RS10800	NC_014910.1	2229206	2229955	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2OG-Fe dioxygenase family protein	2229206..2229955	Alicycliphilus denitrificans BC	
ALIDE_RS10805	CDS	ALIDE_RS10805	NC_014910.1	2230050	2230490	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein	2230050..2230490	Alicycliphilus denitrificans BC	
ALIDE_RS10810	CDS	ALIDE_RS10810	NC_014910.1	2230552	2231064	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bacteriohemerythrin	complement(2230552..2231064)	Alicycliphilus denitrificans BC	
ALIDE_RS10815	CDS	ALIDE_RS10815	NC_014910.1	2231177	2232154	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2231177..2232154)	Alicycliphilus denitrificans BC	
ALIDE_RS10820	CDS	bktB	NC_014910.1	2232295	2233479	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-ketothiolase BktB	complement(2232295..2233479)	Alicycliphilus denitrificans BC	
ALIDE_RS10825	CDS	ALIDE_RS10825	NC_014910.1	2233588	2234358	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	complement(2233588..2234358)	Alicycliphilus denitrificans BC	
ALIDE_RS10830	CDS	ALIDE_RS10830	NC_014910.1	2234392	2235069	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RluA family pseudouridine synthase	complement(2234392..2235069)	Alicycliphilus denitrificans BC	
ALIDE_RS10835	CDS	ALIDE_RS10835	NC_014910.1	2235059	2237227	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	complement(2235059..2237227)	Alicycliphilus denitrificans BC	
ALIDE_RS10840	CDS	ALIDE_RS10840	NC_014910.1	2237273	2237671	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FKBP-type peptidyl-prolyl cis-trans isomerase	complement(2237273..2237671)	Alicycliphilus denitrificans BC	
ALIDE_RS10845	CDS	ALIDE_RS10845	NC_014910.1	2238053	2238745	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	2238053..2238745	Alicycliphilus denitrificans BC	
ALIDE_RS10850	CDS	ALIDE_RS10850	NC_014910.1	2238864	2239643	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	2238864..2239643	Alicycliphilus denitrificans BC	
ALIDE_RS10855	CDS	ALIDE_RS10855	NC_014910.1	2239735	2240322	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2239735..2240322	Alicycliphilus denitrificans BC	
ALIDE_RS10860	CDS	ALIDE_RS10860	NC_014910.1	2240330	2241160	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TlpA disulfide reductase family protein	complement(2240330..2241160)	Alicycliphilus denitrificans BC	
ALIDE_RS10865	CDS	ALIDE_RS10865	NC_014910.1	2241387	2242010	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2'-5' RNA ligase family protein	2241387..2242010	Alicycliphilus denitrificans BC	
ALIDE_RS10870	CDS	ALIDE_RS10870	NC_014910.1	2242085	2242564	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2242085..2242564)	Alicycliphilus denitrificans BC	
ALIDE_RS10875	CDS	ALIDE_RS10875	NC_014910.1	2242691	2243161	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; periplasmic heavy metal sensor	complement(2242691..2243161)	Alicycliphilus denitrificans BC	
ALIDE_RS10880	CDS	ALIDE_RS10880	NC_014910.1	2243158	2243601	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; zf-HC2 domain-containing protein	complement(2243158..2243601)	Alicycliphilus denitrificans BC	
ALIDE_RS10885	CDS	ALIDE_RS10885	NC_014910.1	2243617	2244171	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-70 family RNA polymerase sigma factor	complement(2243617..2244171)	Alicycliphilus denitrificans BC	
ALIDE_RS10890	CDS	ALIDE_RS10890	NC_014910.1	2244274	2244594	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2244274..2244594	Alicycliphilus denitrificans BC	
ALIDE_RS10895	CDS	rlmD	NC_014910.1	2244646	2246097	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	2244646..2246097	Alicycliphilus denitrificans BC	
ALIDE_RS10900	CDS	ALIDE_RS10900	NC_014910.1	2246109	2247452	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-serine ammonia-lyase	2246109..2247452	Alicycliphilus denitrificans BC	
ALIDE_RS10905	CDS	ALIDE_RS10905	NC_014910.1	2247466	2248056	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YigZ family protein	complement(2247466..2248056)	Alicycliphilus denitrificans BC	
ALIDE_RS10910	CDS	azu	NC_014910.1	2248238	2248696	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; azurin	2248238..2248696	Alicycliphilus denitrificans BC	
ALIDE_RS10915	CDS	ALIDE_RS10915	NC_014910.1	2248773	2251199	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YgiQ family radical SAM protein	2248773..2251199	Alicycliphilus denitrificans BC	
ALIDE_RS10920	CDS	ALIDE_RS10920	NC_014910.1	2251309	2252505	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid aminotransferase	complement(2251309..2252505)	Alicycliphilus denitrificans BC	
ALIDE_RS10925	CDS	uvrB	NC_014910.1	2252621	2254708	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit UvrB	2252621..2254708	Alicycliphilus denitrificans BC	
ALIDE_RS10930	CDS	iscR	NC_014910.1	2254959	2255495	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe-S cluster assembly transcriptional regulator IscR	2254959..2255495	Alicycliphilus denitrificans BC	
ALIDE_RS10935	CDS	ALIDE_RS10935	NC_014910.1	2255571	2256791	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IscS subfamily cysteine desulfurase	2255571..2256791	Alicycliphilus denitrificans BC	
ALIDE_RS10940	CDS	iscU	NC_014910.1	2256814	2257215	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe-S cluster assembly scaffold IscU	2256814..2257215	Alicycliphilus denitrificans BC	
ALIDE_RS10945	CDS	iscA	NC_014910.1	2257223	2257546	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly protein IscA	2257223..2257546	Alicycliphilus denitrificans BC	
ALIDE_RS10950	CDS	hscB	NC_014910.1	2257604	2258122	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe-S protein assembly co-chaperone HscB	2257604..2258122	Alicycliphilus denitrificans BC	
ALIDE_RS10955	CDS	hscA	NC_014910.1	2258159	2260027	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe-S protein assembly chaperone HscA	2258159..2260027	Alicycliphilus denitrificans BC	
ALIDE_RS10960	CDS	fdx	NC_014910.1	2260063	2260401	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ISC system 2Fe-2S type ferredoxin	2260063..2260401	Alicycliphilus denitrificans BC	
ALIDE_RS10965	CDS	dnaQ	NC_014910.1	2260401	2261129	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit epsilon	2260401..2261129	Alicycliphilus denitrificans BC	
ALIDE_RS10980	CDS	ALIDE_RS10980	NC_014910.1	2261423	2262535	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)/FAD-dependent oxidoreductase	2261423..2262535	Alicycliphilus denitrificans BC	
ALIDE_RS10985	CDS	ALIDE_RS10985	NC_014910.1	2262668	2262976	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF883 C-terminal domain-containing protein	2262668..2262976	Alicycliphilus denitrificans BC	
ALIDE_RS10990	CDS	ALIDE_RS10990	NC_014910.1	2263010	2263405	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage holin family protein	2263010..2263405	Alicycliphilus denitrificans BC	
ALIDE_RS10995	CDS	ALIDE_RS10995	NC_014910.1	2263407	2263706	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2263407..2263706	Alicycliphilus denitrificans BC	
ALIDE_RS11000	CDS	ALIDE_RS11000	NC_014910.1	2263759	2264805	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone-dependent dihydroorotate dehydrogenase	complement(2263759..2264805)	Alicycliphilus denitrificans BC	
ALIDE_RS11005	CDS	rpiA	NC_014910.1	2264841	2265530	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose-5-phosphate isomerase RpiA	2264841..2265530	Alicycliphilus denitrificans BC	
ALIDE_RS11010	CDS	ALIDE_RS11010	NC_014910.1	2265527	2266168	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin family protein	complement(2265527..2266168)	Alicycliphilus denitrificans BC	
ALIDE_RS11015	CDS	ALIDE_RS11015	NC_014910.1	2266290	2268323	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M3 family metallopeptidase	complement(2266290..2268323)	Alicycliphilus denitrificans BC	
ALIDE_RS11020	CDS	folD	NC_014910.1	2268361	2269209	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	complement(2268361..2269209)	Alicycliphilus denitrificans BC	
ALIDE_RS11025	CDS	ALIDE_RS11025	NC_014910.1	2269292	2269918	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	complement(2269292..2269918)	Alicycliphilus denitrificans BC	
ALIDE_RS11030	CDS	ALIDE_RS11030	NC_014910.1	2269915	2272467	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PAS domain S-box protein	complement(2269915..2272467)	Alicycliphilus denitrificans BC	
ALIDE_RS11035	CDS	aceE	NC_014910.1	2272664	2275360	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate dehydrogenase (acetyl-transferring), homodimeric type	2272664..2275360	Alicycliphilus denitrificans BC	
ALIDE_RS11040	CDS	aceF	NC_014910.1	2275379	2277028	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoyllysine-residue acetyltransferase	2275379..2277028	Alicycliphilus denitrificans BC	
ALIDE_RS11045	CDS	lpdA	NC_014910.1	2277042	2278871	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoyl dehydrogenase	2277042..2278871	Alicycliphilus denitrificans BC	
ALIDE_RS11050	CDS	ALIDE_RS11050	NC_014910.1	2279023	2279304	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2279023..2279304	Alicycliphilus denitrificans BC	
ALIDE_RS11055	CDS	ALIDE_RS11055	NC_014910.1	2279294	2279668	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2279294..2279668	Alicycliphilus denitrificans BC	
ALIDE_RS11065	CDS	ALIDE_RS11065	NC_014910.1	2280168	2281136	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	2280168..2281136	Alicycliphilus denitrificans BC	
ALIDE_RS11070	CDS	ALIDE_RS11070	NC_014910.1	2281203	2282633	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fic family protein	2281203..2282633	Alicycliphilus denitrificans BC	
ALIDE_RS11075	CDS	ALIDE_RS11075	NC_014910.1	2282693	2283592	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	2282693..2283592	Alicycliphilus denitrificans BC	
ALIDE_RS11080	CDS	ALIDE_RS11080	NC_014910.1	2283699	2284400	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethylmenaquinone methyltransferase	2283699..2284400	Alicycliphilus denitrificans BC	
ALIDE_RS11085	CDS	ALIDE_RS11085	NC_014910.1	2284397	2285761	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	2284397..2285761	Alicycliphilus denitrificans BC	
ALIDE_RS11090	CDS	ALIDE_RS11090	NC_014910.1	2285791	2286768	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	2285791..2286768	Alicycliphilus denitrificans BC	
ALIDE_RS11095	CDS	ALIDE_RS11095	NC_014910.1	2286886	2287827	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	2286886..2287827	Alicycliphilus denitrificans BC	
ALIDE_RS11100	CDS	ALIDE_RS11100	NC_014910.1	2287885	2288462	R	frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(<2287885..2288462)	Alicycliphilus denitrificans BC	
ALIDE_RS11105	CDS	ALIDE_RS11105	NC_014910.1	2288487	2289371	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)-dependent oxidoreductase	2288487..2289371	Alicycliphilus denitrificans BC	
ALIDE_RS24155	CDS	ALIDE_RS24155	NC_014910.1	2289368	2289775	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2289368..2289775)	Alicycliphilus denitrificans BC	
ALIDE_RS11115	CDS	ALIDE_RS11115	NC_014910.1	2290088	2290594	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; EVE domain-containing protein	complement(2290088..2290594)	Alicycliphilus denitrificans BC	
ALIDE_RS11120	CDS	ALIDE_RS11120	NC_014910.1	2290591	2290842	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GlsB/YeaQ/YmgE family stress response membrane protein	complement(2290591..2290842)	Alicycliphilus denitrificans BC	
ALIDE_RS11125	CDS	ALIDE_RS11125	NC_014910.1	2291018	2291572	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; C40 family peptidase	complement(2291018..2291572)	Alicycliphilus denitrificans BC	
ALIDE_RS11130	CDS	cycA	NC_014910.1	2291886	2293310	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-serine/D-alanine/glycine transporter	2291886..2293310	Alicycliphilus denitrificans BC	
ALIDE_RS11135	CDS	mdtD	NC_014910.1	2293411	2294829	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter subunit MdtD	2293411..2294829	Alicycliphilus denitrificans BC	
ALIDE_RS11140	CDS	ALIDE_RS11140	NC_014910.1	2295077	2298202	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; EAL domain-containing protein	2295077..2298202	Alicycliphilus denitrificans BC	
ALIDE_RS11145	CDS	ALIDE_RS11145	NC_014910.1	2298217	2298546	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YnfA family protein	2298217..2298546	Alicycliphilus denitrificans BC	
ALIDE_RS11150	CDS	ALIDE_RS11150	NC_014910.1	2298701	2299360	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cistern family PEP-CTERM protein	complement(2298701..2299360)	Alicycliphilus denitrificans BC	
ALIDE_RS11155	CDS	smc	NC_014910.1	2299629	2303153	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosome segregation protein SMC	2299629..2303153	Alicycliphilus denitrificans BC	
ALIDE_RS11160	CDS	ALIDE_RS11160	NC_014910.1	2303164	2304258	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsZ	2303164..2304258	Alicycliphilus denitrificans BC	
ALIDE_RS11165	CDS	ligA	NC_014910.1	2304270	2306423	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent DNA ligase LigA	2304270..2306423	Alicycliphilus denitrificans BC	
ALIDE_RS11170	CDS	ALIDE_RS11170	NC_014910.1	2306427	2307362	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; patatin-like phospholipase family protein	2306427..2307362	Alicycliphilus denitrificans BC	
ALIDE_RS11175	CDS	ALIDE_RS11175	NC_014910.1	2307550	2310033	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transglycosylase domain-containing protein	2307550..2310033	Alicycliphilus denitrificans BC	
ALIDE_RS11180	CDS	ALIDE_RS11180	NC_014910.1	2310044	2311240	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	2310044..2311240	Alicycliphilus denitrificans BC	
ALIDE_RS11185	CDS	ALIDE_RS11185	NC_014910.1	2311233	2311781	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase	complement(2311233..2311781)	Alicycliphilus denitrificans BC	
ALIDE_RS11190	CDS	ALIDE_RS11190	NC_014910.1	2311849	2312544	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarylacetoacetate hydrolase family protein	complement(2311849..2312544)	Alicycliphilus denitrificans BC	
ALIDE_RS11195	CDS	maiA	NC_014910.1	2312658	2313323	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; maleylacetoacetate isomerase	2312658..2313323	Alicycliphilus denitrificans BC	
ALIDE_RS11200	CDS	pgeF	NC_014910.1	2313316	2314164	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan editing factor PgeF	2313316..2314164	Alicycliphilus denitrificans BC	
ALIDE_RS11205	CDS	ALIDE_RS11205	NC_014910.1	2314084	2314374	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2314084..2314374)	Alicycliphilus denitrificans BC	
ALIDE_RS11210	CDS	phaC	NC_014910.1	2314525	2316234	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I poly(R)-hydroxyalkanoic acid synthase	2314525..2316234	Alicycliphilus denitrificans BC	
ALIDE_RS11215	CDS	ALIDE_RS11215	NC_014910.1	2316314	2317492	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA C-acetyltransferase	2316314..2317492	Alicycliphilus denitrificans BC	
ALIDE_RS11220	CDS	phbB	NC_014910.1	2317652	2318389	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetoacetyl-CoA reductase	2317652..2318389	Alicycliphilus denitrificans BC	
ALIDE_RS11225	CDS	ALIDE_RS11225	NC_014910.1	2318818	2320746	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding cassette domain-containing protein	complement(2318818..2320746)	Alicycliphilus denitrificans BC	
ALIDE_RS11230	CDS	ALIDE_RS11230	NC_014910.1	2320802	2321788	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2320802..2321788)	Alicycliphilus denitrificans BC	
ALIDE_RS11235	CDS	ALIDE_RS11235	NC_014910.1	2321846	2323075	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(2321846..2323075)	Alicycliphilus denitrificans BC	
ALIDE_RS11240	CDS	ALIDE_RS11240	NC_014910.1	2323077	2324657	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(2323077..2324657)	Alicycliphilus denitrificans BC	
ALIDE_RS11245	CDS	ALIDE_RS11245	NC_014910.1	2324762	2325766	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(2324762..2325766)	Alicycliphilus denitrificans BC	
ALIDE_RS11250	CDS	prmB	NC_014910.1	2325768	2326691	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L3 N(5)-glutamine methyltransferase	complement(2325768..2326691)	Alicycliphilus denitrificans BC	
ALIDE_RS11255	CDS	dapE	NC_014910.1	2326688	2327866	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-diaminopimelate desuccinylase	complement(2326688..2327866)	Alicycliphilus denitrificans BC	
ALIDE_RS11260	CDS	ALIDE_RS11260	NC_014910.1	2327890	2329053	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PilT/PilU family type 4a pilus ATPase	complement(2327890..2329053)	Alicycliphilus denitrificans BC	
ALIDE_RS11265	CDS	dapD	NC_014910.1	2329116	2329940	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	complement(2329116..2329940)	Alicycliphilus denitrificans BC	
ALIDE_RS11270	CDS	dapC	NC_014910.1	2329948	2331150	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyldiaminopimelate transaminase	complement(2329948..2331150)	Alicycliphilus denitrificans BC	
ALIDE_RS11275	CDS	rsxB	NC_014910.1	2331242	2331925	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transport complex subunit RsxB	complement(2331242..2331925)	Alicycliphilus denitrificans BC	
ALIDE_RS11280	CDS	phaZ	NC_014910.1	2331941	2333257	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; polyhydroxyalkanoate depolymerase	complement(2331941..2333257)	Alicycliphilus denitrificans BC	
ALIDE_RS11285	CDS	ALIDE_RS11285	NC_014910.1	2333433	2334491	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RelA/SpoT domain-containing protein	complement(2333433..2334491)	Alicycliphilus denitrificans BC	
ALIDE_RS11290	CDS	dusA	NC_014910.1	2334558	2335559	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA dihydrouridine(20/20a) synthase DusA	complement(2334558..2335559)	Alicycliphilus denitrificans BC	
ALIDE_RS11295	CDS	ALIDE_RS11295	NC_014910.1	2335793	2336254	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase	2335793..2336254	Alicycliphilus denitrificans BC	
ALIDE_RS11300	CDS	ALIDE_RS11300	NC_014910.1	2336258	2336866	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	2336258..2336866	Alicycliphilus denitrificans BC	
ALIDE_RS11305	CDS	ALIDE_RS11305	NC_014910.1	2337055	2338179	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; saccharopine dehydrogenase NADP-binding domain-containing protein	2337055..2338179	Alicycliphilus denitrificans BC	
ALIDE_RS11310	CDS	ALIDE_RS11310	NC_014910.1	2338176	2340011	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain fatty acid--CoA ligase	complement(2338176..2340011)	Alicycliphilus denitrificans BC	
ALIDE_RS11315	CDS	ALIDE_RS11315	NC_014910.1	2340138	2340773	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	complement(2340138..2340773)	Alicycliphilus denitrificans BC	
ALIDE_RS11320	CDS	ALIDE_RS11320	NC_014910.1	2340787	2341719	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylglutaryl-CoA lyase	complement(2340787..2341719)	Alicycliphilus denitrificans BC	
ALIDE_RS11325	CDS	ALIDE_RS11325	NC_014910.1	2341722	2342687	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2341722..2342687)	Alicycliphilus denitrificans BC	
ALIDE_RS11330	CDS	ALIDE_RS11330	NC_014910.1	2342725	2343948	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	complement(2342725..2343948)	Alicycliphilus denitrificans BC	
ALIDE_RS11335	CDS	ALIDE_RS11335	NC_014910.1	2344052	2345503	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; short-chain fatty acyl-CoA regulator family protein	complement(2344052..2345503)	Alicycliphilus denitrificans BC	
ALIDE_RS11340	CDS	scpA	NC_014910.1	2345619	2347760	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methylmalonyl-CoA mutase	2345619..2347760	Alicycliphilus denitrificans BC	
ALIDE_RS11345	CDS	meaB	NC_014910.1	2347777	2348784	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methylmalonyl Co-A mutase-associated GTPase MeaB	2347777..2348784	Alicycliphilus denitrificans BC	
ALIDE_RS11350	CDS	ALIDE_RS11350	NC_014910.1	2348841	2350373	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA carboxylase subunit beta	2348841..2350373	Alicycliphilus denitrificans BC	
ALIDE_RS11355	CDS	ALIDE_RS11355	NC_014910.1	2350531	2352579	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	2350531..2352579	Alicycliphilus denitrificans BC	
ALIDE_RS11360	CDS	ALIDE_RS11360	NC_014910.1	2352638	2353099	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	2352638..2353099	Alicycliphilus denitrificans BC	
ALIDE_RS11365	CDS	bioB	NC_014910.1	2353565	2354539	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin synthase BioB	2353565..2354539	Alicycliphilus denitrificans BC	
ALIDE_RS11370	CDS	ALIDE_RS11370	NC_014910.1	2354623	2355630	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2354623..2355630)	Alicycliphilus denitrificans BC	
ALIDE_RS11375	CDS	ALIDE_RS11375	NC_014910.1	2355752	2356432	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	2355752..2356432	Alicycliphilus denitrificans BC	
ALIDE_RS11380	CDS	ALIDE_RS11380	NC_014910.1	2356398	2357786	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase	2356398..2357786	Alicycliphilus denitrificans BC	
ALIDE_RS11385	CDS	ALIDE_RS11385	NC_014910.1	2357768	2358754	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	2357768..2358754	Alicycliphilus denitrificans BC	
ALIDE_RS11390	CDS	ALIDE_RS11390	NC_014910.1	2358758	2359204	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; OsmC family protein	complement(2358758..2359204)	Alicycliphilus denitrificans BC	
ALIDE_RS11395	CDS	ALIDE_RS11395	NC_014910.1	2359201	2359494	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; rhodanese-like domain-containing protein	complement(2359201..2359494)	Alicycliphilus denitrificans BC	
ALIDE_RS11400	CDS	ALIDE_RS11400	NC_014910.1	2359592	2359801	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2892 domain-containing protein	complement(2359592..2359801)	Alicycliphilus denitrificans BC	
ALIDE_RS11405	CDS	ALIDE_RS11405	NC_014910.1	2359829	2360965	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD/NAD(P)-binding oxidoreductase	complement(2359829..2360965)	Alicycliphilus denitrificans BC	
ALIDE_RS11410	CDS	ALIDE_RS11410	NC_014910.1	2360962	2362254	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD/NAD(P)-binding oxidoreductase	complement(2360962..2362254)	Alicycliphilus denitrificans BC	
ALIDE_RS11415	CDS	ALIDE_RS11415	NC_014910.1	2362297	2363661	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TolC family protein	complement(2362297..2363661)	Alicycliphilus denitrificans BC	
ALIDE_RS11420	CDS	ALIDE_RS11420	NC_014910.1	2363715	2366948	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter permease subunit	complement(2363715..2366948)	Alicycliphilus denitrificans BC	
ALIDE_RS11425	CDS	ALIDE_RS11425	NC_014910.1	2366950	2367990	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	complement(2366950..2367990)	Alicycliphilus denitrificans BC	
ALIDE_RS11430	CDS	ALIDE_RS11430	NC_014910.1	2368090	2368428	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloregulator ArsR/SmtB family transcription factor	2368090..2368428	Alicycliphilus denitrificans BC	
ALIDE_RS11440	CDS	ALIDE_RS11440	NC_014910.1	2368830	2369615	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldolase/citrate lyase family protein	complement(2368830..2369615)	Alicycliphilus denitrificans BC	
ALIDE_RS11445	CDS	ALIDE_RS11445	NC_014910.1	2369651	2370349	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RraA family protein	complement(2369651..2370349)	Alicycliphilus denitrificans BC	
ALIDE_RS11450	CDS	ALIDE_RS11450	NC_014910.1	2370359	2371375	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2370359..2371375)	Alicycliphilus denitrificans BC	
ALIDE_RS11455	CDS	ALIDE_RS11455	NC_014910.1	2371400	2372392	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2371400..2372392)	Alicycliphilus denitrificans BC	
ALIDE_RS11460	CDS	ALIDE_RS11460	NC_014910.1	2372407	2373447	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family DNA-binding transcriptional regulator	complement(2372407..2373447)	Alicycliphilus denitrificans BC	
ALIDE_RS11465	CDS	ALIDE_RS11465	NC_014910.1	2373444	2374205	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	complement(2373444..2374205)	Alicycliphilus denitrificans BC	
ALIDE_RS11470	CDS	hisD	NC_014910.1	2374208	2375527	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidinol dehydrogenase	complement(2374208..2375527)	Alicycliphilus denitrificans BC	
ALIDE_RS11475	CDS	ALIDE_RS11475	NC_014910.1	2375754	2376359	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	2375754..2376359	Alicycliphilus denitrificans BC	
ALIDE_RS11480	CDS	ALIDE_RS11480	NC_014910.1	2376370	2377038	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-uridine aminocarboxypropyltransferase	2376370..2377038	Alicycliphilus denitrificans BC	
ALIDE_RS11485	CDS	ALIDE_RS11485	NC_014910.1	2377055	2377636	D	This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxidase-related enzyme	2377055..2377636	Alicycliphilus denitrificans BC	
ALIDE_RS11490	CDS	ALIDE_RS11490	NC_014910.1	2377701	2379437	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoethanolamine--lipid A transferase	complement(2377701..2379437)	Alicycliphilus denitrificans BC	
ALIDE_RS11495	CDS	ALIDE_RS11495	NC_014910.1	2379442	2380095	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase PAP2 family protein	complement(2379442..2380095)	Alicycliphilus denitrificans BC	
ALIDE_RS11500	CDS	ALIDE_RS11500	NC_014910.1	2380304	2380978	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	2380304..2380978	Alicycliphilus denitrificans BC	
ALIDE_RS11505	CDS	ALIDE_RS11505	NC_014910.1	2380982	2382349	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAMP domain-containing sensor histidine kinase	2380982..2382349	Alicycliphilus denitrificans BC	
ALIDE_RS11510	CDS	ALIDE_RS11510	NC_014910.1	2382365	2383135	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase-related protein	complement(2382365..2383135)	Alicycliphilus denitrificans BC	
ALIDE_RS11515	CDS	ALIDE_RS11515	NC_014910.1	2383140	2384102	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2383140..2384102)	Alicycliphilus denitrificans BC	
ALIDE_RS11520	CDS	ALIDE_RS11520	NC_014910.1	2384144	2385151	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADPH:quinone oxidoreductase family protein	complement(2384144..2385151)	Alicycliphilus denitrificans BC	
ALIDE_RS11525	CDS	ALIDE_RS11525	NC_014910.1	2385151	2386368	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(2385151..2386368)	Alicycliphilus denitrificans BC	
ALIDE_RS11530	CDS	ALIDE_RS11530	NC_014910.1	2386506	2387675	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	2386506..2387675	Alicycliphilus denitrificans BC	
ALIDE_RS11535	CDS	ALIDE_RS11535	NC_014910.1	2387692	2388747	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2387692..2388747	Alicycliphilus denitrificans BC	
ALIDE_RS11540	CDS	ALIDE_RS11540	NC_014910.1	2388765	2389901	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	2388765..2389901	Alicycliphilus denitrificans BC	
ALIDE_RS11545	CDS	ALIDE_RS11545	NC_014910.1	2390053	2390694	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	2390053..2390694	Alicycliphilus denitrificans BC	
ALIDE_RS11550	CDS	ALIDE_RS11550	NC_014910.1	2390844	2392559	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein-ubiquinone oxidoreductase	2390844..2392559	Alicycliphilus denitrificans BC	
ALIDE_RS11555	CDS	ALIDE_RS11555	NC_014910.1	2392798	2393766	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	2392798..2393766	Alicycliphilus denitrificans BC	
ALIDE_RS11560	CDS	ALIDE_RS11560	NC_014910.1	2393848	2394735	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	2393848..2394735	Alicycliphilus denitrificans BC	
ALIDE_RS11565	CDS	ALIDE_RS11565	NC_014910.1	2394748	2395542	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	2394748..2395542	Alicycliphilus denitrificans BC	
ALIDE_RS11570	CDS	ALIDE_RS11570	NC_014910.1	2395717	2397642	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54-dependent Fis family transcriptional regulator	complement(2395717..2397642)	Alicycliphilus denitrificans BC	
ALIDE_RS11575	CDS	ALIDE_RS11575	NC_014910.1	2397754	2398629	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta fold hydrolase	complement(2397754..2398629)	Alicycliphilus denitrificans BC	
ALIDE_RS11580	CDS	ALIDE_RS11580	NC_014910.1	2398643	2400223	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GMC family oxidoreductase	complement(2398643..2400223)	Alicycliphilus denitrificans BC	
ALIDE_RS11585	CDS	ALIDE_RS11585	NC_014910.1	2400256	2400837	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2400256..2400837)	Alicycliphilus denitrificans BC	
ALIDE_RS11590	CDS	ALIDE_RS11590	NC_014910.1	2400894	2401607	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ligase	complement(2400894..2401607)	Alicycliphilus denitrificans BC	
ALIDE_RS11595	CDS	ALIDE_RS11595	NC_014910.1	2401604	2402317	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxo acid dehydrogenase subunit E2	complement(2401604..2402317)	Alicycliphilus denitrificans BC	
ALIDE_RS11600	CDS	ALIDE_RS11600	NC_014910.1	2402314	2402559	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin/lipoyl-containing protein	complement(2402314..2402559)	Alicycliphilus denitrificans BC	
ALIDE_RS11605	CDS	ALIDE_RS11605	NC_014910.1	2402556	2403593	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoacid dehydrogenase subunit beta	complement(2402556..2403593)	Alicycliphilus denitrificans BC	
ALIDE_RS11610	CDS	ALIDE_RS11610	NC_014910.1	2403619	2404626	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	complement(2403619..2404626)	Alicycliphilus denitrificans BC	
ALIDE_RS11615	CDS	ALIDE_RS11615	NC_014910.1	2404962	2405423	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Lrp/AsnC family transcriptional regulator	complement(2404962..2405423)	Alicycliphilus denitrificans BC	
ALIDE_RS11620	CDS	ALIDE_RS11620	NC_014910.1	2405709	2406680	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter substrate-binding protein	2405709..2406680	Alicycliphilus denitrificans BC	
ALIDE_RS11625	CDS	ALIDE_RS11625	NC_014910.1	2406756	2407250	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter small permease	2406756..2407250	Alicycliphilus denitrificans BC	
ALIDE_RS11630	CDS	ALIDE_RS11630	NC_014910.1	2407247	2408524	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter large permease	2407247..2408524	Alicycliphilus denitrificans BC	
ALIDE_RS11635	CDS	ALIDE_RS11635	NC_014910.1	2408543	2409610	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MBL fold metallo-hydrolase	complement(2408543..2409610)	Alicycliphilus denitrificans BC	
ALIDE_RS11640	CDS	gcvT	NC_014910.1	2409941	2411074	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system aminomethyltransferase GcvT	2409941..2411074	Alicycliphilus denitrificans BC	
ALIDE_RS11645	CDS	gcvH	NC_014910.1	2411161	2411535	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system protein GcvH	2411161..2411535	Alicycliphilus denitrificans BC	
ALIDE_RS11650	CDS	gcvP	NC_014910.1	2411665	2414553	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminomethyl-transferring glycine dehydrogenase	2411665..2414553	Alicycliphilus denitrificans BC	
ALIDE_RS11655	CDS	ALIDE_RS11655	NC_014910.1	2414712	2414972	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; metal/formaldehyde-sensitive transcriptional repressor	2414712..2414972	Alicycliphilus denitrificans BC	
ALIDE_RS11660	CDS	ALIDE_RS11660	NC_014910.1	2414996	2416111	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	2414996..2416111	Alicycliphilus denitrificans BC	
ALIDE_RS11665	CDS	fghA	NC_014910.1	2416221	2417081	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; S-formylglutathione hydrolase	2416221..2417081	Alicycliphilus denitrificans BC	
ALIDE_RS11670	CDS	ALIDE_RS11670	NC_014910.1	2417092	2417271	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2417092..2417271)	Alicycliphilus denitrificans BC	
ALIDE_RS11675	CDS	ALIDE_RS11675	NC_014910.1	2417345	2418232	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	2417345..2418232	Alicycliphilus denitrificans BC	
ALIDE_RS11680	CDS	ALIDE_RS11680	NC_014910.1	2418229	2419347	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PA0069 family radical SAM protein	complement(2418229..2419347)	Alicycliphilus denitrificans BC	
ALIDE_RS11685	CDS	rnk	NC_014910.1	2419615	2420022	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside diphosphate kinase regulator	2419615..2420022	Alicycliphilus denitrificans BC	
ALIDE_RS11690	CDS	ALIDE_RS11690	NC_014910.1	2420069	2421226	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase family protein	complement(2420069..2421226)	Alicycliphilus denitrificans BC	
ALIDE_RS11695	CDS	ALIDE_RS11695	NC_014910.1	2421293	2422249	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitronate monooxygenase family protein	complement(2421293..2422249)	Alicycliphilus denitrificans BC	
ALIDE_RS11700	CDS	ALIDE_RS11700	NC_014910.1	2422328	2424118	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase	complement(2422328..2424118)	Alicycliphilus denitrificans BC	
ALIDE_RS11705	CDS	ALIDE_RS11705	NC_014910.1	2424202	2425134	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding protein	complement(2424202..2425134)	Alicycliphilus denitrificans BC	
ALIDE_RS11710	CDS	ALIDE_RS11710	NC_014910.1	2425152	2425901	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit beta/FixA family protein	complement(2425152..2425901)	Alicycliphilus denitrificans BC	
ALIDE_RS11715	CDS	ALIDE_RS11715	NC_014910.1	2426073	2426852	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase	complement(2426073..2426852)	Alicycliphilus denitrificans BC	
ALIDE_RS11720	CDS	ALIDE_RS11720	NC_014910.1	2426867	2427826	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; histone deacetylase family protein	complement(2426867..2427826)	Alicycliphilus denitrificans BC	
ALIDE_RS11725	CDS	ALIDE_RS11725	NC_014910.1	2427865	2428785	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MoxR family ATPase	2427865..2428785	Alicycliphilus denitrificans BC	
ALIDE_RS11730	CDS	ALIDE_RS11730	NC_014910.1	2428791	2429810	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF58 domain-containing protein	2428791..2429810	Alicycliphilus denitrificans BC	
ALIDE_RS11735	CDS	ALIDE_RS11735	NC_014910.1	2429890	2431947	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3488 and transglutaminase-like domain-containing protein	2429890..2431947	Alicycliphilus denitrificans BC	
ALIDE_RS11740	CDS	mltB	NC_014910.1	2431944	2433014	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein transglycosylase B	2431944..2433014	Alicycliphilus denitrificans BC	
ALIDE_RS11745	CDS	ALIDE_RS11745	NC_014910.1	2433024	2434028	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase C-terminal domain-containing protein	complement(2433024..2434028)	Alicycliphilus denitrificans BC	
ALIDE_RS11750	CDS	ALIDE_RS11750	NC_014910.1	2434043	2434870	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase	complement(2434043..2434870)	Alicycliphilus denitrificans BC	
ALIDE_RS11755	CDS	ALIDE_RS11755	NC_014910.1	2434893	2436152	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter large permease	complement(2434893..2436152)	Alicycliphilus denitrificans BC	
ALIDE_RS11760	CDS	ALIDE_RS11760	NC_014910.1	2436149	2436649	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter small permease subunit	complement(2436149..2436649)	Alicycliphilus denitrificans BC	
ALIDE_RS11765	CDS	ALIDE_RS11765	NC_014910.1	2436704	2437687	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter substrate-binding protein	complement(2436704..2437687)	Alicycliphilus denitrificans BC	
ALIDE_RS11770	CDS	ALIDE_RS11770	NC_014910.1	2437724	2438473	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose 1-dehydrogenase	complement(2437724..2438473)	Alicycliphilus denitrificans BC	
ALIDE_RS11775	CDS	ALIDE_RS11775	NC_014910.1	2438614	2439492	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	2438614..2439492	Alicycliphilus denitrificans BC	
ALIDE_RS11780	CDS	tkt	NC_014910.1	2439645	2441627	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase	2439645..2441627	Alicycliphilus denitrificans BC	
ALIDE_RS11785	CDS	ALIDE_RS11785	NC_014910.1	2441642	2442604	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-2-hydroxyacid dehydrogenase	2441642..2442604	Alicycliphilus denitrificans BC	
ALIDE_RS11790	CDS	ALIDE_RS11790	NC_014910.1	2442624	2443538	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(2442624..2443538)	Alicycliphilus denitrificans BC	
ALIDE_RS11795	CDS	ALIDE_RS11795	NC_014910.1	2443653	2444759	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YeiH family protein	2443653..2444759	Alicycliphilus denitrificans BC	
ALIDE_RS11800	CDS	ALIDE_RS11800	NC_014910.1	2444761	2446038	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter substrate-binding protein	complement(2444761..2446038)	Alicycliphilus denitrificans BC	
ALIDE_RS11805	CDS	ALIDE_RS11805	NC_014910.1	2446071	2446877	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2242 domain-containing protein	complement(2446071..2446877)	Alicycliphilus denitrificans BC	
ALIDE_RS11810	CDS	ALIDE_RS11810	NC_014910.1	2446996	2448204	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	complement(2446996..2448204)	Alicycliphilus denitrificans BC	
ALIDE_RS11815	CDS	ALIDE_RS11815	NC_014910.1	2448204	2448959	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(2448204..2448959)	Alicycliphilus denitrificans BC	
ALIDE_RS11820	CDS	ALIDE_RS11820	NC_014910.1	2448956	2450305	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	complement(2448956..2450305)	Alicycliphilus denitrificans BC	
ALIDE_RS11825	CDS	ALIDE_RS11825	NC_014910.1	2450302	2451708	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux transporter outer membrane subunit	complement(2450302..2451708)	Alicycliphilus denitrificans BC	
ALIDE_RS11830	CDS	tsaD	NC_014910.1	2451831	2452874	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	complement(2451831..2452874)	Alicycliphilus denitrificans BC	
ALIDE_RS11835	CDS	ALIDE_RS11835	NC_014910.1	2452897	2453334	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CBS domain-containing protein	complement(2452897..2453334)	Alicycliphilus denitrificans BC	
ALIDE_RS11840	CDS	ALIDE_RS11840	NC_014910.1	2453419	2454060	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF937 domain-containing protein	complement(2453419..2454060)	Alicycliphilus denitrificans BC	
ALIDE_RS11845	CDS	ALIDE_RS11845	NC_014910.1	2454463	2455701	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	2454463..2455701	Alicycliphilus denitrificans BC	
ALIDE_RS11850	CDS	ALIDE_RS11850	NC_014910.1	2455711	2458854	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter permease subunit	2455711..2458854	Alicycliphilus denitrificans BC	
ALIDE_RS11855	CDS	ALIDE_RS11855	NC_014910.1	2458851	2460359	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux transporter outer membrane subunit	2458851..2460359	Alicycliphilus denitrificans BC	
ALIDE_RS11860	CDS	nirB	NC_014910.1	2460613	2463063	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase large subunit NirB	2460613..2463063	Alicycliphilus denitrificans BC	
ALIDE_RS11865	CDS	nirD	NC_014910.1	2463136	2463513	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase small subunit NirD	2463136..2463513	Alicycliphilus denitrificans BC	
ALIDE_RS11870	CDS	ALIDE_RS11870	NC_014910.1	2463510	2466302	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase	2463510..2466302	Alicycliphilus denitrificans BC	
ALIDE_RS11875	CDS	ALIDE_RS11875	NC_014910.1	2466353	2467576	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	2466353..2467576	Alicycliphilus denitrificans BC	
ALIDE_RS11880	CDS	ALIDE_RS11880	NC_014910.1	2467615	2468205	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DedA family protein	complement(2467615..2468205)	Alicycliphilus denitrificans BC	
ALIDE_RS11885	CDS	ybiB	NC_014910.1	2468365	2469294	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein YbiB	2468365..2469294	Alicycliphilus denitrificans BC	
ALIDE_RS11890	CDS	cobA	NC_014910.1	2469291	2470061	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen-III C-methyltransferase	2469291..2470061	Alicycliphilus denitrificans BC	
ALIDE_RS11895	CDS	ALIDE_RS11895	NC_014910.1	2470062	2470565	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase	complement(2470062..2470565)	Alicycliphilus denitrificans BC	
ALIDE_RS11900	CDS	ALIDE_RS11900	NC_014910.1	2470639	2471880	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)/FAD-dependent oxidoreductase	2470639..2471880	Alicycliphilus denitrificans BC	
ALIDE_RS11905	CDS	ALIDE_RS11905	NC_014910.1	2471991	2473205	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NnrS family protein	2471991..2473205	Alicycliphilus denitrificans BC	
ALIDE_RS11910	CDS	ALIDE_RS11910	NC_014910.1	2473248	2473532	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2249 domain-containing protein	2473248..2473532	Alicycliphilus denitrificans BC	
ALIDE_RS11915	CDS	ALIDE_RS11915	NC_014910.1	2473602	2474588	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2473602..2474588)	Alicycliphilus denitrificans BC	
ALIDE_RS11920	CDS	ALIDE_RS11920	NC_014910.1	2474682	2476184	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(2474682..2476184)	Alicycliphilus denitrificans BC	
ALIDE_RS11925	CDS	ALIDE_RS11925	NC_014910.1	2476238	2477410	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(2476238..2477410)	Alicycliphilus denitrificans BC	
ALIDE_RS11930	CDS	ALIDE_RS11930	NC_014910.1	2477477	2478451	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2477477..2478451)	Alicycliphilus denitrificans BC	
ALIDE_RS11935	CDS	lpdA	NC_014910.1	2478529	2479932	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoyl dehydrogenase	complement(2478529..2479932)	Alicycliphilus denitrificans BC	
ALIDE_RS11940	CDS	ALIDE_RS11940	NC_014910.1	2479943	2481151	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide acetyltransferase family protein	complement(2479943..2481151)	Alicycliphilus denitrificans BC	
ALIDE_RS11945	CDS	ALIDE_RS11945	NC_014910.1	2481155	2481946	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase-related protein	complement(2481155..2481946)	Alicycliphilus denitrificans BC	
ALIDE_RS11950	CDS	ALIDE_RS11950	NC_014910.1	2481972	2482952	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoacid dehydrogenase subunit beta	complement(2481972..2482952)	Alicycliphilus denitrificans BC	
ALIDE_RS11955	CDS	ALIDE_RS11955	NC_014910.1	2482949	2483950	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	complement(2482949..2483950)	Alicycliphilus denitrificans BC	
ALIDE_RS11960	CDS	ALIDE_RS11960	NC_014910.1	2484005	2484385	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase	complement(2484005..2484385)	Alicycliphilus denitrificans BC	
ALIDE_RS11965	CDS	ALIDE_RS11965	NC_014910.1	2484400	2484807	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2484400..2484807)	Alicycliphilus denitrificans BC	
ALIDE_RS11970	CDS	ALIDE_RS11970	NC_014910.1	2484804	2485223	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Zn-ribbon domain-containing OB-fold protein	complement(2484804..2485223)	Alicycliphilus denitrificans BC	
ALIDE_RS11975	CDS	ALIDE_RS11975	NC_014910.1	2485225	2486376	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiolase family protein	complement(2485225..2486376)	Alicycliphilus denitrificans BC	
ALIDE_RS11980	CDS	ALIDE_RS11980	NC_014910.1	2486387	2487535	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(2486387..2487535)	Alicycliphilus denitrificans BC	
ALIDE_RS11985	CDS	ALIDE_RS11985	NC_014910.1	2487676	2489787	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate--CoA ligase family protein	2487676..2489787	Alicycliphilus denitrificans BC	
ALIDE_RS11990	CDS	ALIDE_RS11990	NC_014910.1	2489933	2490727	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	2489933..2490727	Alicycliphilus denitrificans BC	
ALIDE_RS11995	CDS	sufT	NC_014910.1	2490782	2491336	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative Fe-S cluster assembly protein SufT	complement(2490782..2491336)	Alicycliphilus denitrificans BC	
ALIDE_RS12000	CDS	sufU	NC_014910.1	2491333	2491797	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe-S cluster assembly sulfur transfer protein SufU	complement(2491333..2491797)	Alicycliphilus denitrificans BC	
ALIDE_RS12005	CDS	ALIDE_RS12005	NC_014910.1	2491794	2493074	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SufS family cysteine desulfurase	complement(2491794..2493074)	Alicycliphilus denitrificans BC	
ALIDE_RS12010	CDS	ALIDE_RS12010	NC_014910.1	2493067	2494302	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SufD family Fe-S cluster assembly protein	complement(2493067..2494302)	Alicycliphilus denitrificans BC	
ALIDE_RS12015	CDS	sufC	NC_014910.1	2494307	2495080	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe-S cluster assembly ATPase SufC	complement(2494307..2495080)	Alicycliphilus denitrificans BC	
ALIDE_RS12020	CDS	sufB	NC_014910.1	2495151	2496653	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe-S cluster assembly protein SufB	complement(2495151..2496653)	Alicycliphilus denitrificans BC	
ALIDE_RS12025	CDS	rpsU	NC_014910.1	2496932	2497144	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S21	2496932..2497144	Alicycliphilus denitrificans BC	
ALIDE_RS12030	CDS	ALIDE_RS12030	NC_014910.1	2497230	2497676	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GatB/YqeY domain-containing protein	2497230..2497676	Alicycliphilus denitrificans BC	
ALIDE_RS12035	CDS	ALIDE_RS12035	NC_014910.1	2497690	2499081	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HD domain-containing phosphohydrolase	complement(2497690..2499081)	Alicycliphilus denitrificans BC	
ALIDE_RS12040	CDS	ALIDE_RS12040	NC_014910.1	2499232	2499870	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase subunit B	complement(2499232..2499870)	Alicycliphilus denitrificans BC	
ALIDE_RS12045	CDS	ALIDE_RS12045	NC_014910.1	2499874	2500581	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase subunit A	complement(2499874..2500581)	Alicycliphilus denitrificans BC	
ALIDE_RS12050	CDS	ALIDE_RS12050	NC_014910.1	2500665	2501210	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PAS and helix-turn-helix domain-containing protein	2500665..2501210	Alicycliphilus denitrificans BC	
ALIDE_RS12055	CDS	ALIDE_RS12055	NC_014910.1	2501348	2502589	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase	2501348..2502589	Alicycliphilus denitrificans BC	
ALIDE_RS12060	CDS	argA	NC_014910.1	2502816	2504162	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino-acid N-acetyltransferase	2502816..2504162	Alicycliphilus denitrificans BC	
ALIDE_RS12065	CDS	ALIDE_RS12065	NC_014910.1	2504640	2504987	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RidA family protein	2504640..2504987	Alicycliphilus denitrificans BC	
ALIDE_RS12070	CDS	ALIDE_RS12070	NC_014910.1	2505014	2506258	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-amino acid dehydrogenase	2505014..2506258	Alicycliphilus denitrificans BC	
ALIDE_RS12075	CDS	ALIDE_RS12075	NC_014910.1	2506255	2507031	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate/glutamate racemase family protein	2506255..2507031	Alicycliphilus denitrificans BC	
ALIDE_RS12080	CDS	ALIDE_RS12080	NC_014910.1	2507093	2508226	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	2507093..2508226	Alicycliphilus denitrificans BC	
ALIDE_RS12085	CDS	ALIDE_RS12085	NC_014910.1	2508282	2509175	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	2508282..2509175	Alicycliphilus denitrificans BC	
ALIDE_RS12090	CDS	ALIDE_RS12090	NC_014910.1	2509168	2510055	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	2509168..2510055	Alicycliphilus denitrificans BC	
ALIDE_RS12095	CDS	ALIDE_RS12095	NC_014910.1	2510052	2510834	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding cassette domain-containing protein	2510052..2510834	Alicycliphilus denitrificans BC	
ALIDE_RS12100	CDS	ALIDE_RS12100	NC_014910.1	2510834	2511553	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	2510834..2511553	Alicycliphilus denitrificans BC	
ALIDE_RS12105	CDS	ALIDE_RS12105	NC_014910.1	2511577	2512698	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	2511577..2512698	Alicycliphilus denitrificans BC	
ALIDE_RS12110	CDS	dapA	NC_014910.1	2512763	2513671	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-tetrahydrodipicolinate synthase	complement(2512763..2513671)	Alicycliphilus denitrificans BC	
ALIDE_RS12115	CDS	ALIDE_RS12115	NC_014910.1	2513790	2517236	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; indolepyruvate ferredoxin oxidoreductase family protein	complement(2513790..2517236)	Alicycliphilus denitrificans BC	
ALIDE_RS12120	CDS	ALIDE_RS12120	NC_014910.1	2517492	2518235	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	2517492..2518235	Alicycliphilus denitrificans BC	
ALIDE_RS12125	CDS	ALIDE_RS12125	NC_014910.1	2518263	2519888	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HD family phosphohydrolase	complement(2518263..2519888)	Alicycliphilus denitrificans BC	
ALIDE_RS12130	CDS	ALIDE_RS12130	NC_014910.1	2520004	2520513	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide bond formation protein B	complement(2520004..2520513)	Alicycliphilus denitrificans BC	
ALIDE_RS12135	CDS	ALIDE_RS12135	NC_014910.1	2520575	2521702	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter ATP-binding protein	complement(2520575..2521702)	Alicycliphilus denitrificans BC	
ALIDE_RS12140	CDS	cysW	NC_014910.1	2521737	2522630	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter permease subunit CysW	complement(2521737..2522630)	Alicycliphilus denitrificans BC	
ALIDE_RS12145	CDS	cysT	NC_014910.1	2522627	2523493	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter permease subunit CysT	complement(2522627..2523493)	Alicycliphilus denitrificans BC	
ALIDE_RS12150	CDS	rpsI	NC_014910.1	2523498	2524499	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S9	complement(2523498..2524499)	Alicycliphilus denitrificans BC	
ALIDE_RS12155	CDS	ALIDE_RS12155	NC_014910.1	2524608	2525198	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta fold hydrolase	complement(2524608..2525198)	Alicycliphilus denitrificans BC	
ALIDE_RS12160	CDS	ALIDE_RS12160	NC_014910.1	2525286	2526203	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(2525286..2526203)	Alicycliphilus denitrificans BC	
ALIDE_RS12165	CDS	ALIDE_RS12165	NC_014910.1	2526331	2526981	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN-dependent NADH-azoreductase	2526331..2526981	Alicycliphilus denitrificans BC	
ALIDE_RS12170	CDS	ALIDE_RS12170	NC_014910.1	2527039	2527590	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-dependent oxidoreductase	complement(2527039..2527590)	Alicycliphilus denitrificans BC	
ALIDE_RS12175	CDS	ALIDE_RS12175	NC_014910.1	2527682	2528482	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MetQ/NlpA family ABC transporter substrate-binding protein	complement(2527682..2528482)	Alicycliphilus denitrificans BC	
ALIDE_RS12180	CDS	ALIDE_RS12180	NC_014910.1	2528588	2529253	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter permease	complement(2528588..2529253)	Alicycliphilus denitrificans BC	
ALIDE_RS12185	CDS	ALIDE_RS12185	NC_014910.1	2529253	2530296	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter ATP-binding protein	complement(2529253..2530296)	Alicycliphilus denitrificans BC	
ALIDE_RS12190	CDS	ALIDE_RS12190	NC_014910.1	2530405	2530794	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MAPEG family protein	complement(2530405..2530794)	Alicycliphilus denitrificans BC	
ALIDE_RS12195	CDS	recR	NC_014910.1	2530805	2531395	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; recombination mediator RecR	complement(2530805..2531395)	Alicycliphilus denitrificans BC	
ALIDE_RS12200	CDS	ALIDE_RS12200	NC_014910.1	2531415	2531747	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YbaB/EbfC family nucleoid-associated protein	complement(2531415..2531747)	Alicycliphilus denitrificans BC	
ALIDE_RS12205	CDS	dnaX	NC_014910.1	2531779	2533635	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit gamma/tau	complement(2531779..2533635)	Alicycliphilus denitrificans BC	
ALIDE_RS12210	CDS	ALIDE_RS12210	NC_014910.1	2533818	2534645	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TOBE domain-containing protein	complement(2533818..2534645)	Alicycliphilus denitrificans BC	
ALIDE_RS12215	CDS	modD	NC_014910.1	2534682	2535533	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ModD protein	complement(2534682..2535533)	Alicycliphilus denitrificans BC	
ALIDE_RS23890	CDS	modB	NC_014910.1	2535530	2536192	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter permease subunit	complement(2535530..2536192)	Alicycliphilus denitrificans BC	
ALIDE_RS23895	CDS	modA	NC_014910.1	2536193	2536909	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter substrate-binding protein	complement(2536193..2536909)	Alicycliphilus denitrificans BC	
ALIDE_RS12230	CDS	ALIDE_RS12230	NC_014910.1	2536921	2537388	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF364 domain-containing protein	complement(2536921..2537388)	Alicycliphilus denitrificans BC	
ALIDE_RS12235	CDS	ALIDE_RS12235	NC_014910.1	2537595	2538683	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS5-like element ISDisp1 family transposase	complement(2537595..2538683)	Alicycliphilus denitrificans BC	
ALIDE_RS12240	CDS	ALIDE_RS12240	NC_014910.1	2538714	2539085	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4213 domain-containing protein	complement(2538714..2539085)	Alicycliphilus denitrificans BC	
ALIDE_RS12245	CDS	ALIDE_RS12245	NC_014910.1	2539079	2539873	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	complement(2539079..2539873)	Alicycliphilus denitrificans BC	
ALIDE_RS12250	CDS	ALIDE_RS12250	NC_014910.1	2539870	2540631	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(2539870..2540631)	Alicycliphilus denitrificans BC	
ALIDE_RS12255	CDS	ALIDE_RS12255	NC_014910.1	2540628	2541626	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter permease	complement(2540628..2541626)	Alicycliphilus denitrificans BC	
ALIDE_RS12260	CDS	ALIDE_RS12260	NC_014910.1	2541685	2542719	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(2541685..2542719)	Alicycliphilus denitrificans BC	
ALIDE_RS12265	CDS	ALIDE_RS12265	NC_014910.1	2542716	2543255	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2478 domain-containing protein	complement(2542716..2543255)	Alicycliphilus denitrificans BC	
ALIDE_RS12270	CDS	ALIDE_RS12270	NC_014910.1	2543335	2545314	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor	complement(2543335..2545314)	Alicycliphilus denitrificans BC	
ALIDE_RS12275	CDS	ALIDE_RS12275	NC_014910.1	2545603	2546193	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2545603..2546193	Alicycliphilus denitrificans BC	
ALIDE_RS12280	CDS	ALIDE_RS12280	NC_014910.1	2546175	2547551	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03862 family flavoprotein	complement(2546175..2547551)	Alicycliphilus denitrificans BC	
ALIDE_RS12285	CDS	ALIDE_RS12285	NC_014910.1	2547792	2548676	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pirin family protein	2547792..2548676	Alicycliphilus denitrificans BC	
ALIDE_RS12290	CDS	ALIDE_RS12290	NC_014910.1	2548762	2549643	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pirin family protein	2548762..2549643	Alicycliphilus denitrificans BC	
ALIDE_RS12295	CDS	ALIDE_RS12295	NC_014910.1	2549650	2552937	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; UvrD-helicase domain-containing protein	complement(2549650..2552937)	Alicycliphilus denitrificans BC	
ALIDE_RS12300	CDS	ALIDE_RS12300	NC_014910.1	2552930	2555497	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PD-(D/E)XK nuclease family protein	complement(2552930..2555497)	Alicycliphilus denitrificans BC	
ALIDE_RS12305	CDS	trxA	NC_014910.1	2555600	2555932	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin TrxA	2555600..2555932	Alicycliphilus denitrificans BC	
ALIDE_RS12310	CDS	rho	NC_014910.1	2556159	2557421	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription termination factor Rho	2556159..2557421	Alicycliphilus denitrificans BC	
ALIDE_RS12315	CDS	ALIDE_RS12315	NC_014910.1	2557508	2557762	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type B 50S ribosomal protein L31	2557508..2557762	Alicycliphilus denitrificans BC	
ALIDE_RS12320	CDS	ALIDE_RS12320	NC_014910.1	2557901	2559595	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2557901..2559595	Alicycliphilus denitrificans BC	
ALIDE_RS12325	CDS	ALIDE_RS12325	NC_014910.1	2559595	2560953	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MATE family efflux transporter	2559595..2560953	Alicycliphilus denitrificans BC	
ALIDE_RS12330	CDS	phoR	NC_014910.1	2560916	2562292	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate regulon sensor histidine kinase PhoR	complement(2560916..2562292)	Alicycliphilus denitrificans BC	
ALIDE_RS12335	CDS	phoB	NC_014910.1	2562360	2563061	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate regulon transcriptional regulator PhoB	complement(2562360..2563061)	Alicycliphilus denitrificans BC	
ALIDE_RS12340	CDS	phoU	NC_014910.1	2563058	2563759	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate signaling complex protein PhoU	complement(2563058..2563759)	Alicycliphilus denitrificans BC	
ALIDE_RS12345	CDS	pstB	NC_014910.1	2563756	2564544	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate ABC transporter ATP-binding protein PstB	complement(2563756..2564544)	Alicycliphilus denitrificans BC	
ALIDE_RS12350	CDS	pstA	NC_014910.1	2564575	2565456	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate ABC transporter permease PstA	complement(2564575..2565456)	Alicycliphilus denitrificans BC	
ALIDE_RS12355	CDS	pstC	NC_014910.1	2565453	2566391	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate ABC transporter permease PstC	complement(2565453..2566391)	Alicycliphilus denitrificans BC	
ALIDE_RS12360	CDS	pstS	NC_014910.1	2566539	2567579	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate ABC transporter substrate-binding protein PstS	complement(2566539..2567579)	Alicycliphilus denitrificans BC	
ALIDE_RS12365	CDS	ALIDE_RS12365	NC_014910.1	2567839	2569320	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Ppx/GppA phosphatase family protein	2567839..2569320	Alicycliphilus denitrificans BC	
ALIDE_RS12370	CDS	ALIDE_RS12370	NC_014910.1	2569397	2569858	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine phosphatase family protein	complement(2569397..2569858)	Alicycliphilus denitrificans BC	
ALIDE_RS12375	CDS	ppk1	NC_014910.1	2569858	2572032	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; polyphosphate kinase 1	complement(2569858..2572032)	Alicycliphilus denitrificans BC	
ALIDE_RS12380	CDS	ALIDE_RS12380	NC_014910.1	2572295	2573113	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acyltransferase	complement(2572295..2573113)	Alicycliphilus denitrificans BC	
ALIDE_RS12385	CDS	ALIDE_RS12385	NC_014910.1	2573353	2575146	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; EAL domain-containing protein	2573353..2575146	Alicycliphilus denitrificans BC	
ALIDE_RS12390	CDS	glmM	NC_014910.1	2575238	2576572	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglucosamine mutase	complement(2575238..2576572)	Alicycliphilus denitrificans BC	
ALIDE_RS12395	CDS	folP	NC_014910.1	2576562	2577458	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropteroate synthase	complement(2576562..2577458)	Alicycliphilus denitrificans BC	
ALIDE_RS12400	CDS	ftsH	NC_014910.1	2577527	2579452	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent zinc metalloprotease FtsH	complement(2577527..2579452)	Alicycliphilus denitrificans BC	
ALIDE_RS12405	CDS	ALIDE_RS12405	NC_014910.1	2579586	2580248	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RlmE family RNA methyltransferase	complement(2579586..2580248)	Alicycliphilus denitrificans BC	
ALIDE_RS12410	CDS	ALIDE_RS12410	NC_014910.1	2580269	2580739	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YhbY family RNA-binding protein	2580269..2580739	Alicycliphilus denitrificans BC	
ALIDE_RS12415	CDS	ALIDE_RS12415	NC_014910.1	2580739	2581482	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2580739..2581482	Alicycliphilus denitrificans BC	
ALIDE_RS12420	CDS	ALIDE_RS12420	NC_014910.1	2581483	2581890	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4149 domain-containing protein	complement(2581483..2581890)	Alicycliphilus denitrificans BC	
ALIDE_RS12425	CDS	greA	NC_014910.1	2581893	2582369	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription elongation factor GreA	complement(2581893..2582369)	Alicycliphilus denitrificans BC	
ALIDE_RS12430	CDS	carB	NC_014910.1	2582496	2585747	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl-phosphate synthase large subunit	complement(2582496..2585747)	Alicycliphilus denitrificans BC	
ALIDE_RS12435	CDS	carA	NC_014910.1	2585747	2586925	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	complement(2585747..2586925)	Alicycliphilus denitrificans BC	
ALIDE_RS12445	CDS	ALIDE_RS12445	NC_014910.1	2587270	2587695	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family transcriptional regulator	complement(2587270..2587695)	Alicycliphilus denitrificans BC	
ALIDE_RS12450	CDS	ALIDE_RS12450	NC_014910.1	2587795	2588148	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; integration host factor subunit alpha	complement(2587795..2588148)	Alicycliphilus denitrificans BC	
ALIDE_RS12455	CDS	pheT	NC_014910.1	2588145	2590589	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanine--tRNA ligase subunit beta	complement(2588145..2590589)	Alicycliphilus denitrificans BC	
ALIDE_RS12460	CDS	pheS	NC_014910.1	2590713	2591765	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanine--tRNA ligase subunit alpha	complement(2590713..2591765)	Alicycliphilus denitrificans BC	
ALIDE_RS12465	CDS	rplT	NC_014910.1	2591867	2592226	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L20	complement(2591867..2592226)	Alicycliphilus denitrificans BC	
ALIDE_RS12470	CDS	rpmI	NC_014910.1	2592253	2592456	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L35	complement(2592253..2592456)	Alicycliphilus denitrificans BC	
ALIDE_RS12475	CDS	infC	NC_014910.1	2592632	2593231	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-3	complement(2592632..2593231)	Alicycliphilus denitrificans BC	
ALIDE_RS12480	CDS	thrS	NC_014910.1	2593310	2595229	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine--tRNA ligase	complement(2593310..2595229)	Alicycliphilus denitrificans BC	
ALIDE_RS12485	CDS	ALIDE_RS12485	NC_014910.1	2595588	2596499	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	complement(2595588..2596499)	Alicycliphilus denitrificans BC	
ALIDE_RS12490	CDS	aceA	NC_014910.1	2596920	2598251	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase	complement(2596920..2598251)	Alicycliphilus denitrificans BC	
ALIDE_RS12495	CDS	ALIDE_RS12495	NC_014910.1	2598517	2599536	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; EamA family transporter	2598517..2599536	Alicycliphilus denitrificans BC	
ALIDE_RS12500	CDS	ALIDE_RS12500	NC_014910.1	2599693	2599974	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SWIB/MDM2 domain-containing protein	2599693..2599974	Alicycliphilus denitrificans BC	
ALIDE_RS12505	CDS	ALIDE_RS12505	NC_014910.1	2600169	2600441	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; (2Fe-2S)-binding protein	2600169..2600441	Alicycliphilus denitrificans BC	
ALIDE_RS12510	CDS	ALIDE_RS12510	NC_014910.1	2600546	2601253	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; energy transducer TonB	2600546..2601253	Alicycliphilus denitrificans BC	
ALIDE_RS12515	CDS	ALIDE_RS12515	NC_014910.1	2601269	2601988	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MotA/TolQ/ExbB proton channel family protein	2601269..2601988	Alicycliphilus denitrificans BC	
ALIDE_RS12520	CDS	ALIDE_RS12520	NC_014910.1	2601995	2602405	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbD	2601995..2602405	Alicycliphilus denitrificans BC	
ALIDE_RS12525	CDS	ALIDE_RS12525	NC_014910.1	2602501	2602728	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hemin uptake protein HemP	2602501..2602728	Alicycliphilus denitrificans BC	
ALIDE_RS12530	CDS	ALIDE_RS12530	NC_014910.1	2602956	2603363	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; heme-binding protein	complement(2602956..2603363)	Alicycliphilus denitrificans BC	
ALIDE_RS12535	CDS	ALIDE_RS12535	NC_014910.1	2603582	2604271	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Bax inhibitor-1/YccA family protein	2603582..2604271	Alicycliphilus denitrificans BC	
ALIDE_RS12540	CDS	ALIDE_RS12540	NC_014910.1	2604390	2604893	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MarR family transcriptional regulator	2604390..2604893	Alicycliphilus denitrificans BC	
ALIDE_RS12545	CDS	ALIDE_RS12545	NC_014910.1	2604890	2606323	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	2604890..2606323	Alicycliphilus denitrificans BC	
ALIDE_RS12550	CDS	ALIDE_RS12550	NC_014910.1	2606377	2606760	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2606377..2606760	Alicycliphilus denitrificans BC	
ALIDE_RS12555	CDS	ALIDE_RS12555	NC_014910.1	2606793	2607125	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SMR family transporter	complement(2606793..2607125)	Alicycliphilus denitrificans BC	
ALIDE_RS12560	CDS	ALIDE_RS12560	NC_014910.1	2607340	2607930	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; chromate transporter	2607340..2607930	Alicycliphilus denitrificans BC	
ALIDE_RS12565	CDS	ALIDE_RS12565	NC_014910.1	2607933	2608526	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; chromate transporter	2607933..2608526	Alicycliphilus denitrificans BC	
ALIDE_RS12570	CDS	ALIDE_RS12570	NC_014910.1	2608548	2609375	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent deacylase	complement(2608548..2609375)	Alicycliphilus denitrificans BC	
ALIDE_RS12575	CDS	ALIDE_RS12575	NC_014910.1	2609397	2610062	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	complement(2609397..2610062)	Alicycliphilus denitrificans BC	
ALIDE_RS12580	CDS	ALIDE_RS12580	NC_014910.1	2610146	2610499	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1428 domain-containing protein	2610146..2610499	Alicycliphilus denitrificans BC	
ALIDE_RS12585	CDS	ALIDE_RS12585	NC_014910.1	2610544	2610891	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GFA family protein	2610544..2610891	Alicycliphilus denitrificans BC	
ALIDE_RS12590	CDS	ALIDE_RS12590	NC_014910.1	2610985	2611437	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	2610985..2611437	Alicycliphilus denitrificans BC	
ALIDE_RS12595	CDS	ALIDE_RS12595	NC_014910.1	2611470	2611916	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SRPBCC family protein	2611470..2611916	Alicycliphilus denitrificans BC	
ALIDE_RS12600	CDS	ALIDE_RS12600	NC_014910.1	2611952	2612437	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	2611952..2612437	Alicycliphilus denitrificans BC	
ALIDE_RS12605	CDS	ALIDE_RS12605	NC_014910.1	2612561	2612944	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	2612561..2612944	Alicycliphilus denitrificans BC	
ALIDE_RS12610	CDS	ALIDE_RS12610	NC_014910.1	2612951	2613409	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SRPBCC domain-containing protein	2612951..2613409	Alicycliphilus denitrificans BC	
ALIDE_RS12615	CDS	rlmB	NC_014910.1	2613416	2614162	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	complement(2613416..2614162)	Alicycliphilus denitrificans BC	
ALIDE_RS12620	CDS	sstT	NC_014910.1	2614305	2615516	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter SstT	2614305..2615516	Alicycliphilus denitrificans BC	
ALIDE_RS12625	CDS	ALIDE_RS12625	NC_014910.1	2615550	2616272	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(2615550..2616272)	Alicycliphilus denitrificans BC	
ALIDE_RS12630	CDS	ALIDE_RS12630	NC_014910.1	2616291	2616944	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; arylesterase	2616291..2616944	Alicycliphilus denitrificans BC	
ALIDE_RS12635	CDS	ALIDE_RS12635	NC_014910.1	2616958	2617788	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2189 domain-containing protein	complement(2616958..2617788)	Alicycliphilus denitrificans BC	
ALIDE_RS12640	CDS	ALIDE_RS12640	NC_014910.1	2617901	2619130	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PLP-dependent transferase	complement(2617901..2619130)	Alicycliphilus denitrificans BC	
ALIDE_RS12645	CDS	ALIDE_RS12645	NC_014910.1	2619151	2619606	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; BON domain-containing protein	complement(2619151..2619606)	Alicycliphilus denitrificans BC	
ALIDE_RS12650	CDS	ALIDE_RS12650	NC_014910.1	2619733	2621418	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SulP family inorganic anion transporter	2619733..2621418	Alicycliphilus denitrificans BC	
ALIDE_RS12655	CDS	ALIDE_RS12655	NC_014910.1	2621455	2622228	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GGDEF domain-containing protein	2621455..2622228	Alicycliphilus denitrificans BC	
ALIDE_RS12660	CDS	ALIDE_RS12660	NC_014910.1	2622239	2623108	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MinD/ParA family protein	2622239..2623108	Alicycliphilus denitrificans BC	
ALIDE_RS12665	CDS	ALIDE_RS12665	NC_014910.1	2623179	2625083	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; propionate--CoA ligase	complement(2623179..2625083)	Alicycliphilus denitrificans BC	
ALIDE_RS12670	CDS	ALIDE_RS12670	NC_014910.1	2625205	2625813	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismatase family protein	complement(2625205..2625813)	Alicycliphilus denitrificans BC	
ALIDE_RS12675	CDS	ALIDE_RS12675	NC_014910.1	2625877	2626980	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PQQ-dependent sugar dehydrogenase	complement(2625877..2626980)	Alicycliphilus denitrificans BC	
ALIDE_RS12680	CDS	ALIDE_RS12680	NC_014910.1	2627126	2628040	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(2627126..2628040)	Alicycliphilus denitrificans BC	
ALIDE_RS12685	CDS	ALIDE_RS12685	NC_014910.1	2628171	2629688	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA-acylating methylmalonate-semialdehyde dehydrogenase	2628171..2629688	Alicycliphilus denitrificans BC	
ALIDE_RS12690	CDS	ALIDE_RS12690	NC_014910.1	2629685	2630083	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme inhibitor LprI family protein	2629685..2630083	Alicycliphilus denitrificans BC	
ALIDE_RS12695	CDS	ALIDE_RS12695	NC_014910.1	2630109	2631275	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	2630109..2631275	Alicycliphilus denitrificans BC	
ALIDE_RS12700	CDS	ALIDE_RS12700	NC_014910.1	2631343	2631729	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TfoX/Sxy family protein	2631343..2631729	Alicycliphilus denitrificans BC	
ALIDE_RS12705	CDS	mmsB	NC_014910.1	2631760	2632656	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxyisobutyrate dehydrogenase	2631760..2632656	Alicycliphilus denitrificans BC	
ALIDE_RS12710	CDS	ALIDE_RS12710	NC_014910.1	2632771	2633652	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FkbM family methyltransferase	2632771..2633652	Alicycliphilus denitrificans BC	
ALIDE_RS24595	CDS	ALIDE_RS24595	NC_014910.1	2633922	2634092	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2633922..2634092	Alicycliphilus denitrificans BC	
ALIDE_RS12715	CDS	ALIDE_RS12715	NC_014910.1	2634150	2634539	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2634150..2634539)	Alicycliphilus denitrificans BC	
ALIDE_RS12720	CDS	trpB	NC_014910.1	2634677	2635885	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit beta	2634677..2635885	Alicycliphilus denitrificans BC	
ALIDE_RS12725	CDS	ALIDE_RS12725	NC_014910.1	2635913	2636251	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YggL family protein	2635913..2636251	Alicycliphilus denitrificans BC	
ALIDE_RS12730	CDS	garD	NC_014910.1	2636328	2637908	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; galactarate dehydratase	complement(2636328..2637908)	Alicycliphilus denitrificans BC	
ALIDE_RS12735	CDS	ALIDE_RS12735	NC_014910.1	2637949	2638947	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2637949..2638947)	Alicycliphilus denitrificans BC	
ALIDE_RS12740	CDS	ALIDE_RS12740	NC_014910.1	2638972	2640267	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate dehydratase family protein	complement(2638972..2640267)	Alicycliphilus denitrificans BC	
ALIDE_RS12745	CDS	ALIDE_RS12745	NC_014910.1	2640312	2641103	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FadR/GntR family transcriptional regulator	2640312..2641103	Alicycliphilus denitrificans BC	
ALIDE_RS12750	CDS	ALIDE_RS12750	NC_014910.1	2641297	2642283	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	2641297..2642283	Alicycliphilus denitrificans BC	
ALIDE_RS12755	CDS	kdgD	NC_014910.1	2642355	2643266	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-dehydro-4-deoxyglucarate dehydratase	2642355..2643266	Alicycliphilus denitrificans BC	
ALIDE_RS12760	CDS	ALIDE_RS12760	NC_014910.1	2643318	2644271	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	2643318..2644271	Alicycliphilus denitrificans BC	
ALIDE_RS12765	CDS	ALIDE_RS12765	NC_014910.1	2644283	2645275	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-hydroxyacid dehydrogenase	2644283..2645275	Alicycliphilus denitrificans BC	
ALIDE_RS12770	CDS	ALIDE_RS12770	NC_014910.1	2645306	2646643	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enolase C-terminal domain-like protein	2645306..2646643	Alicycliphilus denitrificans BC	
ALIDE_RS12775	CDS	ALIDE_RS12775	NC_014910.1	2646716	2648164	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase family protein	2646716..2648164	Alicycliphilus denitrificans BC	
ALIDE_RS12780	CDS	aat	NC_014910.1	2648234	2648986	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; leucyl/phenylalanyl-tRNA--protein transferase	2648234..2648986	Alicycliphilus denitrificans BC	
ALIDE_RS12785	CDS	ALIDE_RS12785	NC_014910.1	2648983	2649726	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; arginyltransferase	2648983..2649726	Alicycliphilus denitrificans BC	
ALIDE_RS12790	CDS	ALIDE_RS12790	NC_014910.1	2649799	2650500	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pirin family protein	complement(2649799..2650500)	Alicycliphilus denitrificans BC	
ALIDE_RS12795	CDS	ALIDE_RS12795	NC_014910.1	2650612	2651547	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	2650612..2651547	Alicycliphilus denitrificans BC	
ALIDE_RS12800	CDS	ALIDE_RS12800	NC_014910.1	2651622	2652716	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase	2651622..2652716	Alicycliphilus denitrificans BC	
ALIDE_RS12805	CDS	gluQRS	NC_014910.1	2652713	2653678	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA glutamyl-Q(34) synthetase GluQRS	2652713..2653678	Alicycliphilus denitrificans BC	
ALIDE_RS12810	CDS	trmB	NC_014910.1	2653636	2654409	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (guanosine(46)-N7)-methyltransferase TrmB	2653636..2654409	Alicycliphilus denitrificans BC	
ALIDE_RS12815	CDS	ALIDE_RS12815	NC_014910.1	2654438	2655442	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GGDEF domain-containing protein	2654438..2655442	Alicycliphilus denitrificans BC	
ALIDE_RS12820	CDS	alaS	NC_014910.1	2655493	2658114	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine--tRNA ligase	complement(2655493..2658114)	Alicycliphilus denitrificans BC	
ALIDE_RS12825	CDS	ALIDE_RS12825	NC_014910.1	2658334	2659248	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrodipicolinate synthase family protein	2658334..2659248	Alicycliphilus denitrificans BC	
ALIDE_RS12830	CDS	ALIDE_RS12830	NC_014910.1	2659269	2659904	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter small permease	2659269..2659904	Alicycliphilus denitrificans BC	
ALIDE_RS12835	CDS	ALIDE_RS12835	NC_014910.1	2659922	2661187	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter large permease	2659922..2661187	Alicycliphilus denitrificans BC	
ALIDE_RS12840	CDS	ALIDE_RS12840	NC_014910.1	2661213	2662199	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter substrate-binding protein	2661213..2662199	Alicycliphilus denitrificans BC	
ALIDE_RS12845	CDS	ALIDE_RS12845	NC_014910.1	2662257	2663291	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Ldh family oxidoreductase	2662257..2663291	Alicycliphilus denitrificans BC	
ALIDE_RS12850	CDS	ALIDE_RS12850	NC_014910.1	2663366	2664040	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	2663366..2664040	Alicycliphilus denitrificans BC	
ALIDE_RS12855	CDS	ALIDE_RS12855	NC_014910.1	2664064	2665014	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pseudouridine synthase	2664064..2665014	Alicycliphilus denitrificans BC	
ALIDE_RS12860	CDS	ALIDE_RS12860	NC_014910.1	2664989	2667694	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	complement(2664989..2667694)	Alicycliphilus denitrificans BC	
ALIDE_RS12865	CDS	ALIDE_RS12865	NC_014910.1	2667741	2669084	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-D-manno-octulosonic acid transferase	complement(2667741..2669084)	Alicycliphilus denitrificans BC	
ALIDE_RS12870	CDS	ALIDE_RS12870	NC_014910.1	2669105	2670493	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomannomutase/phosphoglucomutase	complement(2669105..2670493)	Alicycliphilus denitrificans BC	
ALIDE_RS12875	CDS	ALIDE_RS12875	NC_014910.1	2670562	2671533	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2670562..2671533)	Alicycliphilus denitrificans BC	
ALIDE_RS12880	CDS	ALIDE_RS12880	NC_014910.1	2671546	2672520	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2671546..2672520)	Alicycliphilus denitrificans BC	
ALIDE_RS12885	CDS	iolB	NC_014910.1	2672615	2673421	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-deoxy-glucuronate isomerase	complement(2672615..2673421)	Alicycliphilus denitrificans BC	
ALIDE_RS12890	CDS	iolC	NC_014910.1	2673418	2675373	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-dehydro-2-deoxygluconokinase	complement(2673418..2675373)	Alicycliphilus denitrificans BC	
ALIDE_RS12895	CDS	ALIDE_RS12895	NC_014910.1	2675468	2676340	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MurR/RpiR family transcriptional regulator	2675468..2676340	Alicycliphilus denitrificans BC	
ALIDE_RS12900	CDS	ALIDE_RS12900	NC_014910.1	2676402	2677901	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AlkA N-terminal domain-containing protein	2676402..2677901	Alicycliphilus denitrificans BC	
ALIDE_RS12905	CDS	ALIDE_RS12905	NC_014910.1	2677960	2678487	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methylated-DNA--[protein]-cysteine S-methyltransferase	2677960..2678487	Alicycliphilus denitrificans BC	
ALIDE_RS12910	CDS	ALIDE_RS12910	NC_014910.1	2678484	2679407	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	2678484..2679407	Alicycliphilus denitrificans BC	
ALIDE_RS12915	CDS	ALIDE_RS12915	NC_014910.1	2679427	2680362	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylate/guanylate cyclase domain-containing protein	complement(2679427..2680362)	Alicycliphilus denitrificans BC	
ALIDE_RS12920	CDS	ALIDE_RS12920	NC_014910.1	2680595	2681566	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LD-carboxypeptidase	complement(2680595..2681566)	Alicycliphilus denitrificans BC	
ALIDE_RS12925	CDS	tadA	NC_014910.1	2681550	2682626	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA adenosine(34) deaminase TadA	complement(2681550..2682626)	Alicycliphilus denitrificans BC	
ALIDE_RS12930	CDS	ALIDE_RS12930	NC_014910.1	2682674	2683306	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN-binding negative transcriptional regulator	complement(2682674..2683306)	Alicycliphilus denitrificans BC	
ALIDE_RS12935	CDS	ALIDE_RS12935	NC_014910.1	2683359	2685332	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; U32 family peptidase	2683359..2685332	Alicycliphilus denitrificans BC	
ALIDE_RS12940	CDS	ALIDE_RS12940	NC_014910.1	2685418	2686695	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	2685418..2686695	Alicycliphilus denitrificans BC	
ALIDE_RS12945	CDS	egtB	NC_014910.1	2686745	2688040	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ergothioneine biosynthesis protein EgtB	complement(2686745..2688040)	Alicycliphilus denitrificans BC	
ALIDE_RS12950	CDS	egtD	NC_014910.1	2688054	2689028	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; L-histidine N(alpha)-methyltransferase	complement(2688054..2689028)	Alicycliphilus denitrificans BC	
ALIDE_RS12955	CDS	ALIDE_RS12955	NC_014910.1	2689278	2689868	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; OmpW family protein	complement(2689278..2689868)	Alicycliphilus denitrificans BC	
ALIDE_RS12960	CDS	ALIDE_RS12960	NC_014910.1	2690013	2691005	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF808 domain-containing protein	complement(2690013..2691005)	Alicycliphilus denitrificans BC	
ALIDE_RS12965	CDS	purL	NC_014910.1	2691109	2695128	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylformylglycinamidine synthase	complement(2691109..2695128)	Alicycliphilus denitrificans BC	
ALIDE_RS12970	CDS	map	NC_014910.1	2695309	2696127	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type I methionyl aminopeptidase	2695309..2696127	Alicycliphilus denitrificans BC	
ALIDE_RS12975	CDS	ALIDE_RS12975	NC_014910.1	2696175	2698799	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; [protein-PII] uridylyltransferase	2696175..2698799	Alicycliphilus denitrificans BC	
ALIDE_RS12980	CDS	ALIDE_RS12980	NC_014910.1	2698809	2700287	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleobase:cation symporter-2 family protein	complement(2698809..2700287)	Alicycliphilus denitrificans BC	
ALIDE_RS12985	CDS	def	NC_014910.1	2700519	2701058	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide deformylase	complement(2700519..2701058)	Alicycliphilus denitrificans BC	
ALIDE_RS12990	CDS	ALIDE_RS12990	NC_014910.1	2701152	2701571	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YbaN family protein	2701152..2701571	Alicycliphilus denitrificans BC	
ALIDE_RS13005	CDS	ALIDE_RS13005	NC_014910.1	2702405	2702731	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2702405..2702731	Alicycliphilus denitrificans BC	
ALIDE_RS13010	CDS	ALIDE_RS13010	NC_014910.1	2702733	2703335	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AAA family ATPase	2702733..2703335	Alicycliphilus denitrificans BC	
ALIDE_RS13015	CDS	icd	NC_014910.1	2703620	2704879	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADP-dependent isocitrate dehydrogenase	complement(2703620..2704879)	Alicycliphilus denitrificans BC	
ALIDE_RS23490	CDS	ALIDE_RS23490	NC_014910.1	2705041	2705292	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2705041..2705292	Alicycliphilus denitrificans BC	
ALIDE_RS13020	CDS	ALIDE_RS13020	NC_014910.1	2705402	2705875	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF192 domain-containing protein	2705402..2705875	Alicycliphilus denitrificans BC	
ALIDE_RS13025	CDS	ALIDE_RS13025	NC_014910.1	2705945	2708182	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADP-dependent isocitrate dehydrogenase	complement(2705945..2708182)	Alicycliphilus denitrificans BC	
ALIDE_RS13030	CDS	ALIDE_RS13030	NC_014910.1	2708482	2709063	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe-Mn family superoxide dismutase	complement(2708482..2709063)	Alicycliphilus denitrificans BC	
ALIDE_RS13035	CDS	xseA	NC_014910.1	2709206	2710543	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII large subunit	complement(2709206..2710543)	Alicycliphilus denitrificans BC	
ALIDE_RS13040	CDS	ALIDE_RS13040	NC_014910.1	2710906	2711544	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MotA/TolQ/ExbB proton channel family protein	2710906..2711544	Alicycliphilus denitrificans BC	
ALIDE_RS13045	CDS	ALIDE_RS13045	NC_014910.1	2711552	2711977	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbD	2711552..2711977	Alicycliphilus denitrificans BC	
ALIDE_RS13050	CDS	lpxK	NC_014910.1	2711982	2712980	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tetraacyldisaccharide 4'-kinase	2711982..2712980	Alicycliphilus denitrificans BC	
ALIDE_RS13055	CDS	ALIDE_RS13055	NC_014910.1	2712994	2713176	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Trm112 family protein	2712994..2713176	Alicycliphilus denitrificans BC	
ALIDE_RS13060	CDS	kdsB	NC_014910.1	2713173	2713958	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-manno-octulosonate cytidylyltransferase	2713173..2713958	Alicycliphilus denitrificans BC	
ALIDE_RS13065	CDS	adk	NC_014910.1	2714057	2714713	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylate kinase	2714057..2714713	Alicycliphilus denitrificans BC	
ALIDE_RS13070	CDS	ALIDE_RS13070	NC_014910.1	2714786	2715748	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; asparaginase	complement(2714786..2715748)	Alicycliphilus denitrificans BC	
ALIDE_RS13075	CDS	lexA	NC_014910.1	2715828	2716502	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional repressor LexA	2715828..2716502	Alicycliphilus denitrificans BC	
ALIDE_RS13080	CDS	ALIDE_RS13080	NC_014910.1	2716657	2717001	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2716657..2717001	Alicycliphilus denitrificans BC	
ALIDE_RS13085	CDS	hrpA	NC_014910.1	2717009	2720989	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent RNA helicase HrpA	complement(2717009..2720989)	Alicycliphilus denitrificans BC	
ALIDE_RS13090	CDS	ALIDE_RS13090	NC_014910.1	2721045	2722238	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiolase family protein	complement(2721045..2722238)	Alicycliphilus denitrificans BC	
ALIDE_RS13095	CDS	ALIDE_RS13095	NC_014910.1	2722235	2723680	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(2722235..2723680)	Alicycliphilus denitrificans BC	
ALIDE_RS13100	CDS	ALIDE_RS13100	NC_014910.1	2723707	2724291	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; BioY family transporter	complement(2723707..2724291)	Alicycliphilus denitrificans BC	
ALIDE_RS13105	CDS	ALIDE_RS13105	NC_014910.1	2724329	2724922	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CbiQ family ECF transporter T component	complement(2724329..2724922)	Alicycliphilus denitrificans BC	
ALIDE_RS13110	CDS	ALIDE_RS13110	NC_014910.1	2724941	2725714	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(2724941..2725714)	Alicycliphilus denitrificans BC	
ALIDE_RS24470	CDS	ALIDE_RS24470	NC_014910.1	2725817	2725978	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2725817..2725978)	Alicycliphilus denitrificans BC	
ALIDE_RS13115	CDS	ALIDE_RS13115	NC_014910.1	2726145	2726723	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2726145..2726723	Alicycliphilus denitrificans BC	
ALIDE_RS13120	CDS	ALIDE_RS13120	NC_014910.1	2726770	2727204	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YMGG-like glycine zipper-containing protein	2726770..2727204	Alicycliphilus denitrificans BC	
ALIDE_RS13125	CDS	gloA	NC_014910.1	2727258	2727674	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lactoylglutathione lyase	2727258..2727674	Alicycliphilus denitrificans BC	
ALIDE_RS13130	CDS	ALIDE_RS13130	NC_014910.1	2727738	2729261	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dynamin family protein	complement(2727738..2729261)	Alicycliphilus denitrificans BC	
ALIDE_RS13135	CDS	ALIDE_RS13135	NC_014910.1	2729258	2730520	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase	complement(2729258..2730520)	Alicycliphilus denitrificans BC	
ALIDE_RS13140	CDS	ALIDE_RS13140	NC_014910.1	2730523	2731869	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(2730523..2731869)	Alicycliphilus denitrificans BC	
ALIDE_RS13145	CDS	ALIDE_RS13145	NC_014910.1	2731901	2732881	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2731901..2732881)	Alicycliphilus denitrificans BC	
ALIDE_RS13150	CDS	catC	NC_014910.1	2732929	2733207	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; muconolactone Delta-isomerase	complement(2732929..2733207)	Alicycliphilus denitrificans BC	
ALIDE_RS13155	CDS	pcaD	NC_014910.1	2733228	2734010	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoadipate enol-lactonase	complement(2733228..2734010)	Alicycliphilus denitrificans BC	
ALIDE_RS13160	CDS	benD	NC_014910.1	2734043	2734816	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; benzoate diol dehydrogenase BenD	complement(2734043..2734816)	Alicycliphilus denitrificans BC	
ALIDE_RS13165	CDS	catA	NC_014910.1	2734839	2735774	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; catechol 1,2-dioxygenase	complement(2734839..2735774)	Alicycliphilus denitrificans BC	
ALIDE_RS13170	CDS	ALIDE_RS13170	NC_014910.1	2735818	2736993	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; muconate/chloromuconate family cycloisomerase	complement(2735818..2736993)	Alicycliphilus denitrificans BC	
ALIDE_RS13175	CDS	ALIDE_RS13175	NC_014910.1	2737138	2738058	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	2737138..2738058	Alicycliphilus denitrificans BC	
ALIDE_RS13180	CDS	eda	NC_014910.1	2738123	2738761	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	complement(2738123..2738761)	Alicycliphilus denitrificans BC	
ALIDE_RS13185	CDS	edd	NC_014910.1	2738752	2740569	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphogluconate dehydratase	complement(2738752..2740569)	Alicycliphilus denitrificans BC	
ALIDE_RS13190	CDS	ALIDE_RS13190	NC_014910.1	2740696	2741706	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter substrate-binding protein	complement(2740696..2741706)	Alicycliphilus denitrificans BC	
ALIDE_RS13195	CDS	ALIDE_RS13195	NC_014910.1	2741763	2743043	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter large permease subunit	complement(2741763..2743043)	Alicycliphilus denitrificans BC	
ALIDE_RS13200	CDS	ALIDE_RS13200	NC_014910.1	2743054	2743575	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TRAP transporter small permease	complement(2743054..2743575)	Alicycliphilus denitrificans BC	
ALIDE_RS13205	CDS	ALIDE_RS13205	NC_014910.1	2743572	2744096	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconokinase	complement(2743572..2744096)	Alicycliphilus denitrificans BC	
ALIDE_RS13210	CDS	ALIDE_RS13210	NC_014910.1	2744331	2745356	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family DNA-binding transcriptional regulator	2744331..2745356	Alicycliphilus denitrificans BC	
ALIDE_RS13215	CDS	clpA	NC_014910.1	2745402	2747750	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease ATP-binding subunit ClpA	complement(2745402..2747750)	Alicycliphilus denitrificans BC	
ALIDE_RS13220	CDS	clpS	NC_014910.1	2747810	2748172	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease adapter ClpS	complement(2747810..2748172)	Alicycliphilus denitrificans BC	
ALIDE_RS13225	CDS	dnaE	NC_014910.1	2748232	2751780	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit alpha	complement(2748232..2751780)	Alicycliphilus denitrificans BC	
ALIDE_RS13230	CDS	ALIDE_RS13230	NC_014910.1	2751909	2752706	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein assembly factor BamD	2751909..2752706	Alicycliphilus denitrificans BC	
ALIDE_RS13235	CDS	ALIDE_RS13235	NC_014910.1	2752669	2754741	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase	complement(2752669..2754741)	Alicycliphilus denitrificans BC	
ALIDE_RS13240	CDS	ALIDE_RS13240	NC_014910.1	2754859	2755662	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein phosphatase 2C domain-containing protein	2754859..2755662	Alicycliphilus denitrificans BC	
ALIDE_RS13245	CDS	ALIDE_RS13245	NC_014910.1	2755666	2756361	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2755666..2756361)	Alicycliphilus denitrificans BC	
ALIDE_RS13250	CDS	zapE	NC_014910.1	2756358	2757455	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZapE	complement(2756358..2757455)	Alicycliphilus denitrificans BC	
ALIDE_RS13255	CDS	lpdA	NC_014910.1	2757532	2758959	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoyl dehydrogenase	complement(2757532..2758959)	Alicycliphilus denitrificans BC	
ALIDE_RS13260	CDS	odhB	NC_014910.1	2759045	2760301	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	complement(2759045..2760301)	Alicycliphilus denitrificans BC	
ALIDE_RS13265	CDS	ALIDE_RS13265	NC_014910.1	2760354	2763230	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxoglutarate dehydrogenase E1 component	complement(2760354..2763230)	Alicycliphilus denitrificans BC	
ALIDE_RS13270	CDS	ALIDE_RS13270	NC_014910.1	2763436	2764494	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AI-2E family transporter	2763436..2764494	Alicycliphilus denitrificans BC	
ALIDE_RS13275	CDS	ALIDE_RS13275	NC_014910.1	2764562	2765545	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2764562..2765545)	Alicycliphilus denitrificans BC	
ALIDE_RS13280	CDS	ALIDE_RS13280	NC_014910.1	2765596	2765958	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2765596..2765958)	Alicycliphilus denitrificans BC	
ALIDE_RS13285	CDS	ALIDE_RS13285	NC_014910.1	2765973	2767325	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyclic terpene utilization AtuA family protein	complement(2765973..2767325)	Alicycliphilus denitrificans BC	
ALIDE_RS13290	CDS	ALIDE_RS13290	NC_014910.1	2767418	2768323	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	2767418..2768323	Alicycliphilus denitrificans BC	
ALIDE_RS13295	CDS	ALIDE_RS13295	NC_014910.1	2768461	2769327	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein	2768461..2769327	Alicycliphilus denitrificans BC	
ALIDE_RS13300	CDS	ALIDE_RS13300	NC_014910.1	2769347	2770984	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dipeptide ABC transporter ATP-binding protein	complement(2769347..2770984)	Alicycliphilus denitrificans BC	
ALIDE_RS13305	CDS	ALIDE_RS13305	NC_014910.1	2770986	2772044	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	complement(2770986..2772044)	Alicycliphilus denitrificans BC	
ALIDE_RS13310	CDS	ALIDE_RS13310	NC_014910.1	2772010	2773047	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease subunit	complement(2772010..2773047)	Alicycliphilus denitrificans BC	
ALIDE_RS13315	CDS	ALIDE_RS13315	NC_014910.1	2773065	2773526	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; isoprenylcysteine carboxylmethyltransferase family protein	complement(2773065..2773526)	Alicycliphilus denitrificans BC	
ALIDE_RS13320	CDS	ALIDE_RS13320	NC_014910.1	2773572	2775395	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; extracellular solute-binding protein	complement(2773572..2775395)	Alicycliphilus denitrificans BC	
ALIDE_RS13325	CDS	fabI	NC_014910.1	2775441	2776241	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-ACP reductase FabI	2775441..2776241	Alicycliphilus denitrificans BC	
ALIDE_RS13330	CDS	yddG	NC_014910.1	2776337	2777245	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid DMT transporter YddG	2776337..2777245	Alicycliphilus denitrificans BC	
ALIDE_RS13335	CDS	ALIDE_RS13335	NC_014910.1	2777301	2777525	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YdcH family protein	complement(2777301..2777525)	Alicycliphilus denitrificans BC	
ALIDE_RS13340	CDS	ALIDE_RS13340	NC_014910.1	2777734	2778588	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA ligase	2777734..2778588	Alicycliphilus denitrificans BC	
ALIDE_RS13345	CDS	ALIDE_RS13345	NC_014910.1	2778763	2779512	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TerC family protein	2778763..2779512	Alicycliphilus denitrificans BC	
ALIDE_RS13350	CDS	ALIDE_RS13350	NC_014910.1	2779573	2781933	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine/lysine/ornithine decarboxylase	complement(2779573..2781933)	Alicycliphilus denitrificans BC	
ALIDE_RS13355	CDS	ALIDE_RS13355	NC_014910.1	2782082	2782513	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NfeD family protein	2782082..2782513	Alicycliphilus denitrificans BC	
ALIDE_RS13360	CDS	ALIDE_RS13360	NC_014910.1	2782583	2783500	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; stomatin-like protein	2782583..2783500	Alicycliphilus denitrificans BC	
ALIDE_RS13365	CDS	ALIDE_RS13365	NC_014910.1	2783497	2784399	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(2783497..2784399)	Alicycliphilus denitrificans BC	
ALIDE_RS13370	CDS	ALIDE_RS13370	NC_014910.1	2784622	2786316	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine pyrophosphate-binding protein	2784622..2786316	Alicycliphilus denitrificans BC	
ALIDE_RS13380	CDS	ALIDE_RS13380	NC_014910.1	2786959	2787291	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YnfA family protein	2786959..2787291	Alicycliphilus denitrificans BC	
ALIDE_RS13385	CDS	ALIDE_RS13385	NC_014910.1	2787452	2788075	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine-type recombinase/integrase	2787452..2788075	Alicycliphilus denitrificans BC	
ALIDE_RS13390	CDS	arsH	NC_014910.1	2788342	2789073	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; arsenical resistance protein ArsH	2788342..2789073	Alicycliphilus denitrificans BC	
ALIDE_RS13395	CDS	ALIDE_RS13395	NC_014910.1	2789090	2791894	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation-translocating P-type ATPase	2789090..2791894	Alicycliphilus denitrificans BC	
ALIDE_RS13400	CDS	ALIDE_RS13400	NC_014910.1	2791906	2792454	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-70 family RNA polymerase sigma factor	2791906..2792454	Alicycliphilus denitrificans BC	
ALIDE_RS13405	CDS	ALIDE_RS13405	NC_014910.1	2792532	2792726	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2792532..2792726	Alicycliphilus denitrificans BC	
ALIDE_RS13410	CDS	ALIDE_RS13410	NC_014910.1	2792730	2793785	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; permease	2792730..2793785	Alicycliphilus denitrificans BC	
ALIDE_RS13415	CDS	ALIDE_RS13415	NC_014910.1	2793820	2794053	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin family protein	2793820..2794053	Alicycliphilus denitrificans BC	
ALIDE_RS13420	CDS	ALIDE_RS13420	NC_014910.1	2794050	2794487	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; OsmC family protein	2794050..2794487	Alicycliphilus denitrificans BC	
ALIDE_RS13425	CDS	ALIDE_RS13425	NC_014910.1	2794484	2795377	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation diffusion facilitator family transporter	2794484..2795377	Alicycliphilus denitrificans BC	
ALIDE_RS13430	CDS	ALIDE_RS13430	NC_014910.1	2795378	2796661	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2795378..2796661	Alicycliphilus denitrificans BC	
ALIDE_RS13435	CDS	ALIDE_RS13435	NC_014910.1	2796670	2797731	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class II glutamine amidotransferase	2796670..2797731	Alicycliphilus denitrificans BC	
ALIDE_RS13440	CDS	ALIDE_RS13440	NC_014910.1	2797824	2798912	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding oxidoreductase	2797824..2798912	Alicycliphilus denitrificans BC	
ALIDE_RS13445	CDS	ALIDE_RS13445	NC_014910.1	2798930	2800114	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA C-acyltransferase	2798930..2800114	Alicycliphilus denitrificans BC	
ALIDE_RS13450	CDS	ALIDE_RS13450	NC_014910.1	2800126	2800359	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2789 domain-containing protein	2800126..2800359	Alicycliphilus denitrificans BC	
ALIDE_RS13455	CDS	ALIDE_RS13455	NC_014910.1	2800366	2800605	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin family protein	complement(2800366..2800605)	Alicycliphilus denitrificans BC	
ALIDE_RS13460	CDS	ALIDE_RS13460	NC_014910.1	2800637	2802082	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; permease	complement(2800637..2802082)	Alicycliphilus denitrificans BC	
ALIDE_RS23065	CDS	ALIDE_RS23065	NC_014910.1	2802549	2803547	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2802549..2803547)	Alicycliphilus denitrificans BC	
ALIDE_RS23500	CDS	ALIDE_RS23500	NC_014910.1	2803827	2804180	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2803827..2804180)	Alicycliphilus denitrificans BC	
ALIDE_RS13470	CDS	ALIDE_RS13470	NC_014910.1	2804418	2805652	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	complement(join(2804418..2805364,2805364..2805652))	Alicycliphilus denitrificans BC	
ALIDE_RS23505	CDS	ALIDE_RS23505	NC_014910.1	2805702	2805896	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(<2805702..2805896)	Alicycliphilus denitrificans BC	
ALIDE_RS13480	CDS	ALIDE_RS13480	NC_014910.1	2806679	2808694	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase III	complement(2806679..2808694)	Alicycliphilus denitrificans BC	
ALIDE_RS13485	CDS	ALIDE_RS13485	NC_014910.1	2808999	2809367	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein	complement(<2808999..2809367)	Alicycliphilus denitrificans BC	
ALIDE_RS13490	CDS	ALIDE_RS13490	NC_014910.1	2809364	2809909	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3158 family protein	complement(2809364..2809909)	Alicycliphilus denitrificans BC	
ALIDE_RS13495	CDS	ALIDE_RS13495	NC_014910.1	2809906	2810691	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03761 family integrating conjugative element protein	complement(2809906..2810691)	Alicycliphilus denitrificans BC	
ALIDE_RS13500	CDS	ALIDE_RS13500	NC_014910.1	2810921	2812153	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; STY4528 family pathogenicity island replication protein	complement(2810921..2812153)	Alicycliphilus denitrificans BC	
ALIDE_RS13505	CDS	ALIDE_RS13505	NC_014910.1	2812157	2812717	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2857 domain-containing protein	complement(2812157..2812717)	Alicycliphilus denitrificans BC	
ALIDE_RS13510	CDS	ALIDE_RS13510	NC_014910.1	2812730	2814403	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParB family protein	complement(2812730..2814403)	Alicycliphilus denitrificans BC	
ALIDE_RS13515	CDS	ALIDE_RS13515	NC_014910.1	2814396	2814653	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2814396..2814653)	Alicycliphilus denitrificans BC	
ALIDE_RS13520	CDS	ALIDE_RS13520	NC_014910.1	2814637	2815503	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParA family protein	complement(2814637..2815503)	Alicycliphilus denitrificans BC	
ALIDE_RS13525	CDS	ALIDE_RS13525	NC_014910.1	2815544	2815762	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AlpA family transcriptional regulator	complement(2815544..2815762)	Alicycliphilus denitrificans BC	
ALIDE_RS13530	CDS	ALIDE_RS13530	NC_014910.1	2815887	2816645	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2815887..2816645)	Alicycliphilus denitrificans BC	
ALIDE_RS13535	CDS	ALIDE_RS13535	NC_014910.1	2817208	2818104	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(2817208..2818104)	Alicycliphilus denitrificans BC	
ALIDE_RS24170	CDS	ALIDE_RS24170	NC_014910.1	2818331	2818528	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2818331..2818528)	Alicycliphilus denitrificans BC	
ALIDE_RS13540	CDS	ALIDE_RS13540	NC_014910.1	2818591	2821710	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter permease subunit	complement(2818591..2821710)	Alicycliphilus denitrificans BC	
ALIDE_RS13545	CDS	ALIDE_RS13545	NC_014910.1	2821707	2823191	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	complement(2821707..2823191)	Alicycliphilus denitrificans BC	
ALIDE_RS13550	CDS	ALIDE_RS13550	NC_014910.1	2823206	2824393	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TolC family protein	complement(2823206..2824393)	Alicycliphilus denitrificans BC	
ALIDE_RS13555	CDS	ALIDE_RS13555	NC_014910.1	2824598	2825134	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2824598..2825134)	Alicycliphilus denitrificans BC	
ALIDE_RS13560	CDS	ALIDE_RS13560	NC_014910.1	2825178	2825420	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2825178..2825420)	Alicycliphilus denitrificans BC	
ALIDE_RS13565	CDS	ALIDE_RS13565	NC_014910.1	2825474	2827750	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; copper-translocating P-type ATPase	complement(2825474..2827750)	Alicycliphilus denitrificans BC	
ALIDE_RS24530	CDS	ALIDE_RS24530	NC_014910.1	2827757	2827948	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2827757..2827948	Alicycliphilus denitrificans BC	
ALIDE_RS13570	CDS	ALIDE_RS13570	NC_014910.1	2827953	2829815	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3141 domain-containing protein	complement(2827953..2829815)	Alicycliphilus denitrificans BC	
ALIDE_RS13575	CDS	ALIDE_RS13575	NC_014910.1	2829925	2830428	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c	complement(2829925..2830428)	Alicycliphilus denitrificans BC	
ALIDE_RS13580	CDS	ALIDE_RS13580	NC_014910.1	2830484	2831131	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; isoprenylcysteine carboxylmethyltransferase family protein	complement(2830484..2831131)	Alicycliphilus denitrificans BC	
ALIDE_RS13585	CDS	ALIDE_RS13585	NC_014910.1	2831136	2831414	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2933 domain-containing protein	complement(2831136..2831414)	Alicycliphilus denitrificans BC	
ALIDE_RS13590	CDS	ALIDE_RS13590	NC_014910.1	2831425	2831895	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2831425..2831895)	Alicycliphilus denitrificans BC	
ALIDE_RS13595	CDS	ALIDE_RS13595	NC_014910.1	2831971	2832312	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; copper-binding protein	complement(2831971..2832312)	Alicycliphilus denitrificans BC	
ALIDE_RS13600	CDS	ALIDE_RS13600	NC_014910.1	2832367	2832873	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cupredoxin family protein	complement(2832367..2832873)	Alicycliphilus denitrificans BC	
ALIDE_RS13605	CDS	ALIDE_RS13605	NC_014910.1	2832896	2833894	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; copper resistance protein B	complement(2832896..2833894)	Alicycliphilus denitrificans BC	
ALIDE_RS13610	CDS	ALIDE_RS13610	NC_014910.1	2834101	2835960	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; copper resistance system multicopper oxidase	complement(2834101..2835960)	Alicycliphilus denitrificans BC	
ALIDE_RS13615	CDS	ALIDE_RS13615	NC_014910.1	2836085	2836768	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heavy metal response regulator transcription factor	2836085..2836768	Alicycliphilus denitrificans BC	
ALIDE_RS13620	CDS	ALIDE_RS13620	NC_014910.1	2836769	2838172	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heavy metal sensor histidine kinase	2836769..2838172	Alicycliphilus denitrificans BC	
ALIDE_RS13625	CDS	ALIDE_RS13625	NC_014910.1	2838304	2838651	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4148 domain-containing protein	2838304..2838651	Alicycliphilus denitrificans BC	
ALIDE_RS13630	CDS	ALIDE_RS13630	NC_014910.1	2839094	2840773	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; multicopper oxidase domain-containing protein	2839094..2840773	Alicycliphilus denitrificans BC	
ALIDE_RS13640	CDS	ALIDE_RS13640	NC_014910.1	2840858	2842119	D	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	join(2840858..2841125,2841125..2842119)	Alicycliphilus denitrificans BC	
ALIDE_RS13645	CDS	ALIDE_RS13645	NC_014910.1	2842270	2842500	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2842270..2842500	Alicycliphilus denitrificans BC	
ALIDE_RS13650	CDS	ALIDE_RS13650	NC_014910.1	2842529	2843599	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	complement(2842529..2843599)	Alicycliphilus denitrificans BC	
ALIDE_RS13655	CDS	ALIDE_RS13655	NC_014910.1	2843641	2845644	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation-translocating P-type ATPase	complement(2843641..2845644)	Alicycliphilus denitrificans BC	
ALIDE_RS13660	CDS	ALIDE_RS13660	NC_014910.1	2845705	2845983	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; metal/formaldehyde-sensitive transcriptional repressor	complement(2845705..2845983)	Alicycliphilus denitrificans BC	
ALIDE_RS13665	CDS	ALIDE_RS13665	NC_014910.1	2846141	2847049	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	2846141..2847049	Alicycliphilus denitrificans BC	
ALIDE_RS13670	CDS	ALIDE_RS13670	NC_014910.1	2847307	2847789	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix transcriptional regulator	complement(2847307..2847789)	Alicycliphilus denitrificans BC	
ALIDE_RS13675	CDS	ALIDE_RS13675	NC_014910.1	2847887	2848189	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HU family DNA-binding protein	complement(2847887..2848189)	Alicycliphilus denitrificans BC	
ALIDE_RS23510	CDS	ALIDE_RS23510	NC_014910.1	2848397	2848534	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; response regulator transcription factor	2848397..2848534	Alicycliphilus denitrificans BC	
ALIDE_RS24600	CDS	ALIDE_RS24600	NC_014910.1	2848668	2848808	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2848668..2848808	Alicycliphilus denitrificans BC	
ALIDE_RS13685	CDS	ALIDE_RS13685	NC_014910.1	2848877	2849878	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TerB family tellurite resistance protein	2848877..2849878	Alicycliphilus denitrificans BC	
ALIDE_RS13690	CDS	ALIDE_RS13690	NC_014910.1	2849895	2850800	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(2849895..2850800)	Alicycliphilus denitrificans BC	
ALIDE_RS13695	CDS	ALIDE_RS13695	NC_014910.1	2850892	2851983	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tartrate dehydrogenase	2850892..2851983	Alicycliphilus denitrificans BC	
ALIDE_RS13700	CDS	ALIDE_RS13700	NC_014910.1	2852155	2853174	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; patatin-like phospholipase family protein	2852155..2853174	Alicycliphilus denitrificans BC	
ALIDE_RS13705	CDS	ALIDE_RS13705	NC_014910.1	2853176	2854108	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(2853176..2854108)	Alicycliphilus denitrificans BC	
ALIDE_RS13710	CDS	ALIDE_RS13710	NC_014910.1	2854238	2855227	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	2854238..2855227	Alicycliphilus denitrificans BC	
ALIDE_RS13715	CDS	ALIDE_RS13715	NC_014910.1	2855224	2856747	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; altronate dehydratase family protein	2855224..2856747	Alicycliphilus denitrificans BC	
ALIDE_RS13720	CDS	ALIDE_RS13720	NC_014910.1	2856814	2858283	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent succinate-semialdehyde dehydrogenase	2856814..2858283	Alicycliphilus denitrificans BC	
ALIDE_RS13725	CDS	hpaI	NC_014910.1	2858290	2859093	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-2-oxoheptanedioate aldolase	2858290..2859093	Alicycliphilus denitrificans BC	
ALIDE_RS13730	CDS	ALIDE_RS13730	NC_014910.1	2859294	2859917	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF938 domain-containing protein	2859294..2859917	Alicycliphilus denitrificans BC	
ALIDE_RS13735	CDS	murI	NC_014910.1	2859958	2860821	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate racemase	2859958..2860821	Alicycliphilus denitrificans BC	
ALIDE_RS13740	CDS	hutG	NC_014910.1	2860818	2861639	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; N-formylglutamate deformylase	complement(2860818..2861639)	Alicycliphilus denitrificans BC	
ALIDE_RS13745	CDS	ALIDE_RS13745	NC_014910.1	2861668	2863101	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; formimidoylglutamate deiminase	complement(2861668..2863101)	Alicycliphilus denitrificans BC	
ALIDE_RS13750	CDS	hutI	NC_014910.1	2863106	2864344	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazolonepropionase	complement(2863106..2864344)	Alicycliphilus denitrificans BC	
ALIDE_RS13755	CDS	ALIDE_RS13755	NC_014910.1	2864670	2865272	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HutD family protein	complement(2864670..2865272)	Alicycliphilus denitrificans BC	
ALIDE_RS13760	CDS	ALIDE_RS13760	NC_014910.1	2865278	2866060	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein	complement(2865278..2866060)	Alicycliphilus denitrificans BC	
ALIDE_RS13765	CDS	ALIDE_RS13765	NC_014910.1	2866057	2866725	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease	complement(2866057..2866725)	Alicycliphilus denitrificans BC	
ALIDE_RS13770	CDS	ALIDE_RS13770	NC_014910.1	2866740	2867495	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter substrate-binding protein	complement(2866740..2867495)	Alicycliphilus denitrificans BC	
ALIDE_RS13775	CDS	ALIDE_RS13775	NC_014910.1	2867539	2868288	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	complement(2867539..2868288)	Alicycliphilus denitrificans BC	
ALIDE_RS13780	CDS	hutU	NC_014910.1	2868407	2870128	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; urocanate hydratase	complement(2868407..2870128)	Alicycliphilus denitrificans BC	
ALIDE_RS13785	CDS	ALIDE_RS13785	NC_014910.1	2870172	2871650	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytosine permease	complement(2870172..2871650)	Alicycliphilus denitrificans BC	
ALIDE_RS13790	CDS	hutC	NC_014910.1	2871793	2872518	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine utilization repressor	2871793..2872518	Alicycliphilus denitrificans BC	
ALIDE_RS13795	CDS	hutH	NC_014910.1	2872519	2874108	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine ammonia-lyase	complement(2872519..2874108)	Alicycliphilus denitrificans BC	
ALIDE_RS13800	CDS	hutC	NC_014910.1	2874172	2874954	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine utilization repressor	complement(2874172..2874954)	Alicycliphilus denitrificans BC	
ALIDE_RS13805	CDS	ALIDE_RS13805	NC_014910.1	2874971	2875753	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(2874971..2875753)	Alicycliphilus denitrificans BC	
ALIDE_RS13810	CDS	ALIDE_RS13810	NC_014910.1	2875753	2876580	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	complement(2875753..2876580)	Alicycliphilus denitrificans BC	
ALIDE_RS13815	CDS	ALIDE_RS13815	NC_014910.1	2876618	2877583	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(2876618..2877583)	Alicycliphilus denitrificans BC	
ALIDE_RS13820	CDS	ALIDE_RS13820	NC_014910.1	2877791	2878948	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(2877791..2878948)	Alicycliphilus denitrificans BC	
ALIDE_RS13825	CDS	ALIDE_RS13825	NC_014910.1	2878987	2880198	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(2878987..2880198)	Alicycliphilus denitrificans BC	
ALIDE_RS13830	CDS	ALIDE_RS13830	NC_014910.1	2880290	2881216	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	2880290..2881216	Alicycliphilus denitrificans BC	
ALIDE_RS13835	CDS	ALIDE_RS13835	NC_014910.1	2881244	2882227	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2881244..2882227)	Alicycliphilus denitrificans BC	
ALIDE_RS13840	CDS	ALIDE_RS13840	NC_014910.1	2882272	2883261	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(2882272..2883261)	Alicycliphilus denitrificans BC	
ALIDE_RS13845	CDS	ALIDE_RS13845	NC_014910.1	2883304	2884275	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylglutaryl-CoA lyase	complement(2883304..2884275)	Alicycliphilus denitrificans BC	
ALIDE_RS13850	CDS	ALIDE_RS13850	NC_014910.1	2884272	2885477	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(2884272..2885477)	Alicycliphilus denitrificans BC	
ALIDE_RS13855	CDS	ALIDE_RS13855	NC_014910.1	2885605	2886507	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	2885605..2886507	Alicycliphilus denitrificans BC	
ALIDE_RS13860	CDS	earP	NC_014910.1	2886504	2887586	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor P maturation arginine rhamnosyltransferase EarP	2886504..2887586	Alicycliphilus denitrificans BC	
ALIDE_RS13865	CDS	efp	NC_014910.1	2887746	2888300	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor P	2887746..2888300	Alicycliphilus denitrificans BC	
ALIDE_RS13870	CDS	ALIDE_RS13870	NC_014910.1	2888374	2888832	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2888374..2888832)	Alicycliphilus denitrificans BC	
ALIDE_RS13875	CDS	ALIDE_RS13875	NC_014910.1	2888953	2891037	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; VC_2705 family sodium/solute symporter	complement(2888953..2891037)	Alicycliphilus denitrificans BC	
ALIDE_RS13880	CDS	ALIDE_RS13880	NC_014910.1	2891030	2891347	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4212 domain-containing protein	complement(2891030..2891347)	Alicycliphilus denitrificans BC	
ALIDE_RS13885	CDS	ppsA	NC_014910.1	2891364	2893754	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate synthase	complement(2891364..2893754)	Alicycliphilus denitrificans BC	
ALIDE_RS13890	CDS	ALIDE_RS13890	NC_014910.1	2893977	2894807	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate, water dikinase regulatory protein	2893977..2894807	Alicycliphilus denitrificans BC	
ALIDE_RS13895	CDS	ALIDE_RS13895	NC_014910.1	2894841	2897960	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter permease subunit	complement(2894841..2897960)	Alicycliphilus denitrificans BC	
ALIDE_RS13900	CDS	ALIDE_RS13900	NC_014910.1	2897974	2899086	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HlyD family efflux transporter periplasmic adaptor subunit	complement(2897974..2899086)	Alicycliphilus denitrificans BC	
ALIDE_RS13905	CDS	ALIDE_RS13905	NC_014910.1	2899083	2899628	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2899083..2899628)	Alicycliphilus denitrificans BC	
ALIDE_RS13910	CDS	ALIDE_RS13910	NC_014910.1	2899736	2901004	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TolC family protein	complement(2899736..2901004)	Alicycliphilus denitrificans BC	
ALIDE_RS13915	CDS	ALIDE_RS13915	NC_014910.1	2901186	2901563	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2901186..2901563)	Alicycliphilus denitrificans BC	
ALIDE_RS13920	CDS	ALIDE_RS13920	NC_014910.1	2901619	2903076	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; catalase	complement(2901619..2903076)	Alicycliphilus denitrificans BC	
ALIDE_RS13925	CDS	ahpF	NC_014910.1	2903145	2904713	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alkyl hydroperoxide reductase subunit F	complement(2903145..2904713)	Alicycliphilus denitrificans BC	
ALIDE_RS13930	CDS	ahpC	NC_014910.1	2904809	2905384	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alkyl hydroperoxide reductase subunit C	complement(2904809..2905384)	Alicycliphilus denitrificans BC	
ALIDE_RS13935	CDS	bfr	NC_014910.1	2905600	2906076	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bacterioferritin	2905600..2906076	Alicycliphilus denitrificans BC	
ALIDE_RS13940	CDS	flhD	NC_014910.1	2906303	2906632	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar transcriptional regulator FlhD	2906303..2906632	Alicycliphilus denitrificans BC	
ALIDE_RS13945	CDS	flhC	NC_014910.1	2906669	2907208	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar transcriptional regulator FlhC	2906669..2907208	Alicycliphilus denitrificans BC	
ALIDE_RS13950	CDS	ppc	NC_014910.1	2907241	2910084	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate carboxylase	complement(2907241..2910084)	Alicycliphilus denitrificans BC	
ALIDE_RS13955	CDS	hemC	NC_014910.1	2910204	2911133	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylbilane synthase	2910204..2911133	Alicycliphilus denitrificans BC	
ALIDE_RS13960	CDS	ALIDE_RS13960	NC_014910.1	2911127	2911951	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen-III synthase	2911127..2911951	Alicycliphilus denitrificans BC	
ALIDE_RS13965	CDS	ALIDE_RS13965	NC_014910.1	2911941	2913020	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen-III C-methyltransferase	2911941..2913020	Alicycliphilus denitrificans BC	
ALIDE_RS13970	CDS	ALIDE_RS13970	NC_014910.1	2913046	2914335	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heme biosynthesis HemY N-terminal domain-containing protein	2913046..2914335	Alicycliphilus denitrificans BC	
ALIDE_RS13975	CDS	ALIDE_RS13975	NC_014910.1	2914589	2916244	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cbb3-type cytochrome c oxidase subunit I	2914589..2916244	Alicycliphilus denitrificans BC	
ALIDE_RS13980	CDS	ALIDE_RS13980	NC_014910.1	2916234	2916881	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cbb3-type cytochrome c oxidase subunit II	2916234..2916881	Alicycliphilus denitrificans BC	
ALIDE_RS13985	CDS	ALIDE_RS13985	NC_014910.1	2916895	2917488	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c	2916895..2917488	Alicycliphilus denitrificans BC	
ALIDE_RS13990	CDS	ALIDE_RS13990	NC_014910.1	2917496	2918131	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SCO family protein	2917496..2918131	Alicycliphilus denitrificans BC	
ALIDE_RS13995	CDS	ALIDE_RS13995	NC_014910.1	2918128	2918733	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2918128..2918733	Alicycliphilus denitrificans BC	
ALIDE_RS14000	CDS	ALIDE_RS14000	NC_014910.1	2918897	2921767	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; valine--tRNA ligase	2918897..2921767	Alicycliphilus denitrificans BC	
ALIDE_RS14005	CDS	galU	NC_014910.1	2921875	2922759	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UTP--glucose-1-phosphate uridylyltransferase GalU	2921875..2922759	Alicycliphilus denitrificans BC	
ALIDE_RS14010	CDS	ALIDE_RS14010	NC_014910.1	2922890	2923117	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfurtransferase TusA family protein	complement(2922890..2923117)	Alicycliphilus denitrificans BC	
ALIDE_RS14015	CDS	ALIDE_RS14015	NC_014910.1	2923123	2923686	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX domain-containing protein	complement(2923123..2923686)	Alicycliphilus denitrificans BC	
ALIDE_RS14020	CDS	cysM	NC_014910.1	2923692	2924597	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase CysM	complement(2923692..2924597)	Alicycliphilus denitrificans BC	
ALIDE_RS14025	CDS	ALIDE_RS14025	NC_014910.1	2925208	2925450	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2274 domain-containing protein	complement(2925208..2925450)	Alicycliphilus denitrificans BC	
ALIDE_RS14030	CDS	ALIDE_RS14030	NC_014910.1	2925447	2926718	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TrbI/VirB10 family protein	complement(2925447..2926718)	Alicycliphilus denitrificans BC	
ALIDE_RS14035	CDS	trbG	NC_014910.1	2926721	2927713	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer protein TrbG	complement(2926721..2927713)	Alicycliphilus denitrificans BC	
ALIDE_RS14040	CDS	trbF	NC_014910.1	2927710	2928414	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TrbF	complement(2927710..2928414)	Alicycliphilus denitrificans BC	
ALIDE_RS14045	CDS	trbL	NC_014910.1	2928433	2929785	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer protein TrbL	complement(2928433..2929785)	Alicycliphilus denitrificans BC	
ALIDE_RS14050	CDS	ALIDE_RS14050	NC_014910.1	2929782	2930096	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2929782..2930096)	Alicycliphilus denitrificans BC	
ALIDE_RS14055	CDS	trbJ	NC_014910.1	2930108	2930863	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer protein TrbJ	complement(2930108..2930863)	Alicycliphilus denitrificans BC	
ALIDE_RS14060	CDS	trbE	NC_014910.1	2930860	2933319	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TrbE	complement(2930860..2933319)	Alicycliphilus denitrificans BC	
ALIDE_RS14065	CDS	ALIDE_RS14065	NC_014910.1	2933334	2933606	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; VirB3 family type IV secretion system protein	complement(2933334..2933606)	Alicycliphilus denitrificans BC	
ALIDE_RS14070	CDS	ALIDE_RS14070	NC_014910.1	2933603	2933989	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TrbC/VirB2 family protein	complement(2933603..2933989)	Alicycliphilus denitrificans BC	
ALIDE_RS14075	CDS	trbB	NC_014910.1	2933986	2935026	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer ATPase TrbB	complement(2933986..2935026)	Alicycliphilus denitrificans BC	
ALIDE_RS14080	CDS	ALIDE_RS14080	NC_014910.1	2935035	2935499	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribbon-helix-helix protein, CopG family	complement(2935035..2935499)	Alicycliphilus denitrificans BC	
ALIDE_RS14085	CDS	ALIDE_RS14085	NC_014910.1	2935496	2937502	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TraG	complement(2935496..2937502)	Alicycliphilus denitrificans BC	
ALIDE_RS14090	CDS	ALIDE_RS14090	NC_014910.1	2937746	2937973	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; EexN family lipoprotein	complement(2937746..2937973)	Alicycliphilus denitrificans BC	
ALIDE_RS14095	CDS	ALIDE_RS14095	NC_014910.1	2937987	2938913	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(2937987..2938913)	Alicycliphilus denitrificans BC	
ALIDE_RS14100	CDS	ALIDE_RS14100	NC_014910.1	2939105	2941087	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta fold hydrolase	complement(2939105..2941087)	Alicycliphilus denitrificans BC	
ALIDE_RS14105	CDS	ALIDE_RS14105	NC_014910.1	2941203	2942132	R	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase	complement(2941203..>2942132)	Alicycliphilus denitrificans BC	
ALIDE_RS14110	CDS	ALIDE_RS14110	NC_014910.1	2942170	2942733	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein	complement(2942170..2942733)	Alicycliphilus denitrificans BC	
ALIDE_RS14115	CDS	phbB	NC_014910.1	2942802	2943548	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetoacetyl-CoA reductase	complement(2942802..2943548)	Alicycliphilus denitrificans BC	
ALIDE_RS14120	CDS	ALIDE_RS14120	NC_014910.1	2943559	2944002	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2943559..2944002)	Alicycliphilus denitrificans BC	
ALIDE_RS14125	CDS	ALIDE_RS14125	NC_014910.1	2944110	2945867	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta fold hydrolase	complement(2944110..2945867)	Alicycliphilus denitrificans BC	
ALIDE_RS14130	CDS	ALIDE_RS14130	NC_014910.1	2946189	2946797	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	2946189..2946797	Alicycliphilus denitrificans BC	
ALIDE_RS14135	CDS	ALIDE_RS14135	NC_014910.1	2946866	2947285	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	2946866..2947285	Alicycliphilus denitrificans BC	
ALIDE_RS14140	CDS	hlyD	NC_014910.1	2947313	2948353	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; secretion protein HlyD	2947313..2948353	Alicycliphilus denitrificans BC	
ALIDE_RS14145	CDS	ALIDE_RS14145	NC_014910.1	2948355	2950127	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding cassette domain-containing protein	2948355..2950127	Alicycliphilus denitrificans BC	
ALIDE_RS14150	CDS	ALIDE_RS14150	NC_014910.1	2950124	2951293	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	2950124..2951293	Alicycliphilus denitrificans BC	
ALIDE_RS14155	CDS	ALIDE_RS14155	NC_014910.1	2951298	2952416	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	2951298..2952416	Alicycliphilus denitrificans BC	
ALIDE_RS14160	CDS	ALIDE_RS14160	NC_014910.1	2952413	2953948	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux transporter outer membrane subunit	2952413..>2953948	Alicycliphilus denitrificans BC	
ALIDE_RS14165	CDS	yiaY	NC_014910.1	2954059	2955210	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; L-threonine dehydrogenase	2954059..2955210	Alicycliphilus denitrificans BC	
ALIDE_RS14170	CDS	ALIDE_RS14170	NC_014910.1	2955264	2955473	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2892 domain-containing protein	2955264..2955473	Alicycliphilus denitrificans BC	
ALIDE_RS14175	CDS	ALIDE_RS14175	NC_014910.1	2955481	2956893	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MBL fold metallo-hydrolase	2955481..2956893	Alicycliphilus denitrificans BC	
ALIDE_RS14180	CDS	ALIDE_RS14180	NC_014910.1	2956890	2957756	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR00730 family Rossman fold protein	2956890..2957756	Alicycliphilus denitrificans BC	
ALIDE_RS14185	CDS	ALIDE_RS14185	NC_014910.1	2957753	2958952	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A deacylase LpxR family protein	2957753..2958952	Alicycliphilus denitrificans BC	
ALIDE_RS14190	CDS	ALIDE_RS14190	NC_014910.1	2959013	2959474	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c	2959013..2959474	Alicycliphilus denitrificans BC	
ALIDE_RS14195	CDS	ALIDE_RS14195	NC_014910.1	2959514	2960722	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate/propionate family kinase	2959514..2960722	Alicycliphilus denitrificans BC	
ALIDE_RS14200	CDS	ALIDE_RS14200	NC_014910.1	2960806	2963178	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase	2960806..2963178	Alicycliphilus denitrificans BC	
ALIDE_RS23515	CDS	ALIDE_RS23515	NC_014910.1	2963270	2963609	R	frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3363 domain-containing protein	complement(<2963270..>2963609)	Alicycliphilus denitrificans BC	
ALIDE_RS14210	CDS	ALIDE_RS14210	NC_014910.1	2963691	2964170	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(2963691..2964170)	Alicycliphilus denitrificans BC	
ALIDE_RS14215	CDS	ALIDE_RS14215	NC_014910.1	2964294	2964755	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; periplasmic heavy metal sensor	complement(2964294..2964755)	Alicycliphilus denitrificans BC	
ALIDE_RS14220	CDS	ALIDE_RS14220	NC_014910.1	2964752	2965219	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; zf-HC2 domain-containing protein	complement(2964752..2965219)	Alicycliphilus denitrificans BC	
ALIDE_RS14225	CDS	ALIDE_RS14225	NC_014910.1	2965235	2965789	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-70 family RNA polymerase sigma factor	complement(2965235..2965789)	Alicycliphilus denitrificans BC	
ALIDE_RS14230	CDS	ALIDE_RS14230	NC_014910.1	2966048	2966458	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY domain-containing protein	2966048..2966458	Alicycliphilus denitrificans BC	
ALIDE_RS14235	CDS	ALIDE_RS14235	NC_014910.1	2966488	2966964	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2271 domain-containing protein	2966488..2966964	Alicycliphilus denitrificans BC	
ALIDE_RS14240	CDS	ALIDE_RS14240	NC_014910.1	2966975	2969179	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY domain-containing protein	2966975..2969179	Alicycliphilus denitrificans BC	
ALIDE_RS14245	CDS	ALIDE_RS14245	NC_014910.1	2969160	2970137	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD:protein FMN transferase	2969160..2970137	Alicycliphilus denitrificans BC	
ALIDE_RS24605	CDS	ALIDE_RS24605	NC_014910.1	2970236	2970745	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	2970236..2970745	Alicycliphilus denitrificans BC	
ALIDE_RS14255	CDS	ALIDE_RS14255	NC_014910.1	2970884	2971459	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome b	2970884..2971459	Alicycliphilus denitrificans BC	
ALIDE_RS14260	CDS	ALIDE_RS14260	NC_014910.1	2971598	2972320	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator	2971598..2972320	Alicycliphilus denitrificans BC	
ALIDE_RS14265	CDS	ALIDE_RS14265	NC_014910.1	2972431	2972661	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heavy metal-associated domain-containing protein	2972431..2972661	Alicycliphilus denitrificans BC	
ALIDE_RS14270	CDS	ALIDE_RS14270	NC_014910.1	2972768	2974687	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation-translocating P-type ATPase	2972768..2974687	Alicycliphilus denitrificans BC	
ALIDE_RS14275	CDS	ALIDE_RS14275	NC_014910.1	2974882	2976867	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; relaxase/mobilization nuclease and DUF3363 domain-containing protein	complement(2974882..2976867)	Alicycliphilus denitrificans BC	
ALIDE_RS14280	CDS	ALIDE_RS14280	NC_014910.1	2977316	2977903	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; S26 family signal peptidase	complement(2977316..2977903)	Alicycliphilus denitrificans BC	
ALIDE_RS14285	CDS	ALIDE_RS14285	NC_014910.1	2977900	2978445	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2840 domain-containing protein	complement(2977900..2978445)	Alicycliphilus denitrificans BC	
ALIDE_RS14290	CDS	ALIDE_RS14290	NC_014910.1	2978442	2978567	R	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosome partitioning protein ParB	complement(2978442..>2978567)	Alicycliphilus denitrificans BC	
ALIDE_RS14295	CDS	ALIDE_RS14295	NC_014910.1	2978601	2979835	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	complement(join(2978601..2979547,2979547..2979835))	Alicycliphilus denitrificans BC	
ALIDE_RS14305	CDS	ALIDE_RS14305	NC_014910.1	2979887	2980054	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase	complement(<2979887..2980054)	Alicycliphilus denitrificans BC	
ALIDE_RS24180	CDS	ALIDE_RS24180	NC_014910.1	2980214	2980441	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(2980214..2980441)	Alicycliphilus denitrificans BC	
ALIDE_RS24785	CDS	ALIDE_RS24785	NC_014910.1	2980386	2980535	D	incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	<2980386..>2980535	Alicycliphilus denitrificans BC	
ALIDE_RS14315	CDS	ALIDE_RS14315	NC_014910.1	2980531	2981367	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase-related protein	2980531..2981367	Alicycliphilus denitrificans BC	
ALIDE_RS14320	CDS	ALIDE_RS14320	NC_014910.1	2981510	2982103	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	2981510..2982103	Alicycliphilus denitrificans BC	
ALIDE_RS14325	CDS	ALIDE_RS14325	NC_014910.1	2982153	2983682	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I adenylate-forming enzyme family protein	complement(2982153..2983682)	Alicycliphilus denitrificans BC	
ALIDE_RS14330	CDS	ALIDE_RS14330	NC_014910.1	2983733	2984692	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylglutaryl-CoA lyase	complement(2983733..2984692)	Alicycliphilus denitrificans BC	
ALIDE_RS14335	CDS	ALIDE_RS14335	NC_014910.1	2984708	2986714	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin carboxylase N-terminal domain-containing protein	complement(2984708..2986714)	Alicycliphilus denitrificans BC	
ALIDE_RS14340	CDS	ALIDE_RS14340	NC_014910.1	2986723	2988330	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxyl transferase domain-containing protein	complement(2986723..2988330)	Alicycliphilus denitrificans BC	
ALIDE_RS14345	CDS	ALIDE_RS14345	NC_014910.1	2988323	2989684	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(2988323..2989684)	Alicycliphilus denitrificans BC	
ALIDE_RS14350	CDS	ALIDE_RS14350	NC_014910.1	2989784	2990569	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase/isomerase family protein	2989784..2990569	Alicycliphilus denitrificans BC	
ALIDE_RS14355	CDS	ALIDE_RS14355	NC_014910.1	2990696	2991916	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	2990696..2991916	Alicycliphilus denitrificans BC	
ALIDE_RS14360	CDS	ALIDE_RS14360	NC_014910.1	2992277	2994199	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SurA N-terminal domain-containing protein	complement(2992277..2994199)	Alicycliphilus denitrificans BC	
ALIDE_RS14370	CDS	ALIDE_RS14370	NC_014910.1	2994349	2994621	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HU family DNA-binding protein	complement(2994349..2994621)	Alicycliphilus denitrificans BC	
ALIDE_RS14375	CDS	pgsA	NC_014910.1	2994966	2995535	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	complement(2994966..2995535)	Alicycliphilus denitrificans BC	
ALIDE_RS14380	CDS	uvrC	NC_014910.1	2995583	2997541	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit UvrC	complement(2995583..2997541)	Alicycliphilus denitrificans BC	
ALIDE_RS14385	CDS	ALIDE_RS14385	NC_014910.1	2997666	2998295	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF6806 family protein	complement(2997666..2998295)	Alicycliphilus denitrificans BC	
ALIDE_RS14400	CDS	ALIDE_RS14400	NC_014910.1	2998769	2999998	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	2998769..2999998	Alicycliphilus denitrificans BC	
ALIDE_RS14405	CDS	ALIDE_RS14405	NC_014910.1	3000014	3000286	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; H-NS histone family protein	complement(3000014..3000286)	Alicycliphilus denitrificans BC	
ALIDE_RS14410	CDS	ALIDE_RS14410	NC_014910.1	3000368	3001165	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	3000368..3001165	Alicycliphilus denitrificans BC	
ALIDE_RS14415	CDS	ALIDE_RS14415	NC_014910.1	3001418	3002191	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	3001418..3002191	Alicycliphilus denitrificans BC	
ALIDE_RS14420	CDS	ALIDE_RS14420	NC_014910.1	3002214	3003440	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	3002214..3003440	Alicycliphilus denitrificans BC	
ALIDE_RS14425	CDS	ALIDE_RS14425	NC_014910.1	3003450	3005150	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain fatty acid--CoA ligase	3003450..3005150	Alicycliphilus denitrificans BC	
ALIDE_RS14430	CDS	ALIDE_RS14430	NC_014910.1	3005291	3006457	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(3005291..3006457)	Alicycliphilus denitrificans BC	
ALIDE_RS14435	CDS	ALIDE_RS14435	NC_014910.1	3006502	3007209	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(3006502..3007209)	Alicycliphilus denitrificans BC	
ALIDE_RS14440	CDS	ALIDE_RS14440	NC_014910.1	3007196	3007960	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(3007196..3007960)	Alicycliphilus denitrificans BC	
ALIDE_RS14445	CDS	ALIDE_RS14445	NC_014910.1	3007947	3008921	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	complement(3007947..3008921)	Alicycliphilus denitrificans BC	
ALIDE_RS14450	CDS	ALIDE_RS14450	NC_014910.1	3008922	3009785	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	complement(3008922..3009785)	Alicycliphilus denitrificans BC	
ALIDE_RS14455	CDS	ALIDE_RS14455	NC_014910.1	3010384	3011352	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3010384..3011352	Alicycliphilus denitrificans BC	
ALIDE_RS14460	CDS	ALIDE_RS14460	NC_014910.1	3011417	3012472	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; porin	3011417..3012472	Alicycliphilus denitrificans BC	
ALIDE_RS14465	CDS	ALIDE_RS14465	NC_014910.1	3012553	3012999	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	3012553..3012999	Alicycliphilus denitrificans BC	
ALIDE_RS14470	CDS	ALIDE_RS14470	NC_014910.1	3013106	3013915	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase/isomerase family protein	3013106..3013915	Alicycliphilus denitrificans BC	
ALIDE_RS14475	CDS	ALIDE_RS14475	NC_014910.1	3014011	3015504	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase family protein	3014011..3015504	Alicycliphilus denitrificans BC	
ALIDE_RS14480	CDS	ALIDE_RS14480	NC_014910.1	3015593	3017071	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase family protein	3015593..3017071	Alicycliphilus denitrificans BC	
ALIDE_RS14485	CDS	ALIDE_RS14485	NC_014910.1	3017142	3018548	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	3017142..3018548	Alicycliphilus denitrificans BC	
ALIDE_RS14490	CDS	ALIDE_RS14490	NC_014910.1	3018572	3019543	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3018572..3019543	Alicycliphilus denitrificans BC	
ALIDE_RS14495	CDS	ALIDE_RS14495	NC_014910.1	3019726	3019935	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3019726..3019935	Alicycliphilus denitrificans BC	
ALIDE_RS14500	CDS	ALIDE_RS14500	NC_014910.1	3019943	3021430	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase	3019943..3021430	Alicycliphilus denitrificans BC	
ALIDE_RS14505	CDS	ALIDE_RS14505	NC_014910.1	3021448	3022518	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-binding dehydrogenase	3021448..3022518	Alicycliphilus denitrificans BC	
ALIDE_RS14510	CDS	ALIDE_RS14510	NC_014910.1	3022605	3023738	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	3022605..3023738	Alicycliphilus denitrificans BC	
ALIDE_RS14515	CDS	ALIDE_RS14515	NC_014910.1	3023817	3024710	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	3023817..3024710	Alicycliphilus denitrificans BC	
ALIDE_RS14520	CDS	ALIDE_RS14520	NC_014910.1	3024715	3025608	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	3024715..3025608	Alicycliphilus denitrificans BC	
ALIDE_RS14525	CDS	ALIDE_RS14525	NC_014910.1	3025605	3026369	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	3025605..3026369	Alicycliphilus denitrificans BC	
ALIDE_RS14530	CDS	ALIDE_RS14530	NC_014910.1	3026641	3027387	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	3026641..3027387	Alicycliphilus denitrificans BC	
ALIDE_RS14535	CDS	ALIDE_RS14535	NC_014910.1	3027498	3029213	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein-ubiquinone oxidoreductase	complement(3027498..3029213)	Alicycliphilus denitrificans BC	
ALIDE_RS14540	CDS	ALIDE_RS14540	NC_014910.1	3029274	3030119	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA ester lyase	complement(3029274..3030119)	Alicycliphilus denitrificans BC	
ALIDE_RS14545	CDS	ALIDE_RS14545	NC_014910.1	3030122	3031321	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	complement(3030122..3031321)	Alicycliphilus denitrificans BC	
ALIDE_RS14550	CDS	ALIDE_RS14550	NC_014910.1	3031334	3032182	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase N-terminal domain-containing protein	complement(3031334..3032182)	Alicycliphilus denitrificans BC	
ALIDE_RS14555	CDS	ALIDE_RS14555	NC_014910.1	3032271	3033203	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding protein	complement(3032271..3033203)	Alicycliphilus denitrificans BC	
ALIDE_RS14560	CDS	ALIDE_RS14560	NC_014910.1	3033221	3033970	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit beta/FixA family protein	complement(3033221..3033970)	Alicycliphilus denitrificans BC	
ALIDE_RS14565	CDS	ALIDE_RS14565	NC_014910.1	3033993	3035159	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3033993..3035159)	Alicycliphilus denitrificans BC	
ALIDE_RS14570	CDS	ALIDE_RS14570	NC_014910.1	3035269	3036198	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	3035269..3036198	Alicycliphilus denitrificans BC	
ALIDE_RS14575	CDS	ALIDE_RS14575	NC_014910.1	3036195	3037625	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	complement(3036195..3037625)	Alicycliphilus denitrificans BC	
ALIDE_RS14580	CDS	ALIDE_RS14580	NC_014910.1	3037637	3038818	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(3037637..3038818)	Alicycliphilus denitrificans BC	
ALIDE_RS14585	CDS	ALIDE_RS14585	NC_014910.1	3038859	3039614	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	complement(3038859..3039614)	Alicycliphilus denitrificans BC	
ALIDE_RS14590	CDS	ALIDE_RS14590	NC_014910.1	3039726	3041663	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(3039726..3041663)	Alicycliphilus denitrificans BC	
ALIDE_RS14595	CDS	ALIDE_RS14595	NC_014910.1	3041677	3042882	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA C-acetyltransferase	complement(3041677..3042882)	Alicycliphilus denitrificans BC	
ALIDE_RS14600	CDS	fabG	NC_014910.1	3042963	3043712	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP reductase FabG	complement(3042963..3043712)	Alicycliphilus denitrificans BC	
ALIDE_RS14605	CDS	ALIDE_RS14605	NC_014910.1	3043743	3044618	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC/PaaZ C-terminal domain-containing protein	complement(3043743..3044618)	Alicycliphilus denitrificans BC	
ALIDE_RS14610	CDS	ALIDE_RS14610	NC_014910.1	3044854	3046005	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	3044854..3046005	Alicycliphilus denitrificans BC	
ALIDE_RS14615	CDS	ALIDE_RS14615	NC_014910.1	3046045	3046914	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	complement(3046045..3046914)	Alicycliphilus denitrificans BC	
ALIDE_RS14620	CDS	ALIDE_RS14620	NC_014910.1	3047027	3047860	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	3047027..3047860	Alicycliphilus denitrificans BC	
ALIDE_RS14625	CDS	ALIDE_RS14625	NC_014910.1	3047857	3048651	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	3047857..3048651	Alicycliphilus denitrificans BC	
ALIDE_RS14630	CDS	ALIDE_RS14630	NC_014910.1	3048695	3050131	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	complement(3048695..3050131)	Alicycliphilus denitrificans BC	
ALIDE_RS14635	CDS	ALIDE_RS14635	NC_014910.1	3050128	3050748	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2889 domain-containing protein	complement(3050128..3050748)	Alicycliphilus denitrificans BC	
ALIDE_RS14640	CDS	ALIDE_RS14640	NC_014910.1	3050821	3051768	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	complement(3050821..3051768)	Alicycliphilus denitrificans BC	
ALIDE_RS14645	CDS	ALIDE_RS14645	NC_014910.1	3052008	3053627	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GMC family oxidoreductase N-terminal domain-containing protein	3052008..3053627	Alicycliphilus denitrificans BC	
ALIDE_RS14650	CDS	ALIDE_RS14650	NC_014910.1	3053653	3055125	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase	3053653..3055125	Alicycliphilus denitrificans BC	
ALIDE_RS14655	CDS	ALIDE_RS14655	NC_014910.1	3055156	3056085	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	3055156..3056085	Alicycliphilus denitrificans BC	
ALIDE_RS14660	CDS	ALIDE_RS14660	NC_014910.1	3056086	3057303	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(3056086..3057303)	Alicycliphilus denitrificans BC	
ALIDE_RS14665	CDS	ALIDE_RS14665	NC_014910.1	3057309	3058322	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3057309..3058322)	Alicycliphilus denitrificans BC	
ALIDE_RS14670	CDS	ALIDE_RS14670	NC_014910.1	3058384	3059199	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase/isomerase family protein	complement(3058384..3059199)	Alicycliphilus denitrificans BC	
ALIDE_RS14675	CDS	ALIDE_RS14675	NC_014910.1	3059241	3060047	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	complement(3059241..3060047)	Alicycliphilus denitrificans BC	
ALIDE_RS14685	CDS	ALIDE_RS14685	NC_014910.1	3060576	3061718	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	3060576..3061718	Alicycliphilus denitrificans BC	
ALIDE_RS14690	CDS	ALIDE_RS14690	NC_014910.1	3061733	3062233	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC/PaaZ C-terminal domain-containing protein	3061733..3062233	Alicycliphilus denitrificans BC	
ALIDE_RS14695	CDS	ALIDE_RS14695	NC_014910.1	3062239	3063597	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyclic terpene utilization AtuA family protein	3062239..3063597	Alicycliphilus denitrificans BC	
ALIDE_RS14700	CDS	ALIDE_RS14700	NC_014910.1	3063599	3063940	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3063599..3063940	Alicycliphilus denitrificans BC	
ALIDE_RS14705	CDS	ALIDE_RS14705	NC_014910.1	3063953	3065134	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid-transfer protein	3063953..3065134	Alicycliphilus denitrificans BC	
ALIDE_RS14710	CDS	ALIDE_RS14710	NC_014910.1	3065252	3066259	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3065252..3066259	Alicycliphilus denitrificans BC	
ALIDE_RS14715	CDS	ALIDE_RS14715	NC_014910.1	3066265	3067497	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	3066265..3067497	Alicycliphilus denitrificans BC	
ALIDE_RS14720	CDS	ALIDE_RS14720	NC_014910.1	3067545	3068702	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	3067545..3068702	Alicycliphilus denitrificans BC	
ALIDE_RS24610	CDS	ALIDE_RS24610	NC_014910.1	3068727	3068885	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3068727..3068885	Alicycliphilus denitrificans BC	
ALIDE_RS14725	CDS	ALIDE_RS14725	NC_014910.1	3069212	3069688	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioesterase family protein	3069212..3069688	Alicycliphilus denitrificans BC	
ALIDE_RS14730	CDS	ALIDE_RS14730	NC_014910.1	3069734	3070891	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	3069734..3070891	Alicycliphilus denitrificans BC	
ALIDE_RS14735	CDS	ALIDE_RS14735	NC_014910.1	3071052	3072020	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3071052..3072020)	Alicycliphilus denitrificans BC	
ALIDE_RS14740	CDS	ALIDE_RS14740	NC_014910.1	3072187	3073143	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(3072187..3073143)	Alicycliphilus denitrificans BC	
ALIDE_RS14745	CDS	ALIDE_RS14745	NC_014910.1	3073232	3074653	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	3073232..3074653	Alicycliphilus denitrificans BC	
ALIDE_RS14750	CDS	ALIDE_RS14750	NC_014910.1	3074818	3075600	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	3074818..3075600	Alicycliphilus denitrificans BC	
ALIDE_RS14755	CDS	ALIDE_RS14755	NC_014910.1	3075597	3077567	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase	3075597..3077567	Alicycliphilus denitrificans BC	
ALIDE_RS14760	CDS	ALIDE_RS14760	NC_014910.1	3077582	3078301	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(3077582..3078301)	Alicycliphilus denitrificans BC	
ALIDE_RS14765	CDS	ALIDE_RS14765	NC_014910.1	3078291	3079040	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(3078291..3079040)	Alicycliphilus denitrificans BC	
ALIDE_RS14770	CDS	ALIDE_RS14770	NC_014910.1	3079043	3079960	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	complement(3079043..3079960)	Alicycliphilus denitrificans BC	
ALIDE_RS14775	CDS	ALIDE_RS14775	NC_014910.1	3079953	3080828	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	complement(3079953..3080828)	Alicycliphilus denitrificans BC	
ALIDE_RS14780	CDS	ALIDE_RS14780	NC_014910.1	3081007	3082182	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(3081007..3082182)	Alicycliphilus denitrificans BC	
ALIDE_RS14785	CDS	ALIDE_RS14785	NC_014910.1	3082377	3083147	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase/isomerase family protein	complement(3082377..3083147)	Alicycliphilus denitrificans BC	
ALIDE_RS14790	CDS	ALIDE_RS14790	NC_014910.1	3083152	3083835	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitroreductase	complement(3083152..3083835)	Alicycliphilus denitrificans BC	
ALIDE_RS14795	CDS	ALIDE_RS14795	NC_014910.1	3083839	3084249	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SgcJ/EcaC family oxidoreductase	complement(3083839..3084249)	Alicycliphilus denitrificans BC	
ALIDE_RS14800	CDS	ALIDE_RS14800	NC_014910.1	3084258	3085223	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3084258..3085223)	Alicycliphilus denitrificans BC	
ALIDE_RS14805	CDS	ALIDE_RS14805	NC_014910.1	3085236	3086396	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	complement(3085236..3086396)	Alicycliphilus denitrificans BC	
ALIDE_RS14810	CDS	ALIDE_RS14810	NC_014910.1	3086398	3087642	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	complement(3086398..3087642)	Alicycliphilus denitrificans BC	
ALIDE_RS14815	CDS	ALIDE_RS14815	NC_014910.1	3087719	3088885	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3087719..3088885)	Alicycliphilus denitrificans BC	
ALIDE_RS14820	CDS	ALIDE_RS14820	NC_014910.1	3088897	3089358	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase	complement(3088897..3089358)	Alicycliphilus denitrificans BC	
ALIDE_RS14825	CDS	ALIDE_RS14825	NC_014910.1	3089386	3090270	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA ester lyase	complement(3089386..3090270)	Alicycliphilus denitrificans BC	
ALIDE_RS14830	CDS	ALIDE_RS14830	NC_014910.1	3090475	3091092	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	complement(3090475..3091092)	Alicycliphilus denitrificans BC	
ALIDE_RS14845	CDS	lon	NC_014910.1	3091563	3093983	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase La	complement(3091563..3093983)	Alicycliphilus denitrificans BC	
ALIDE_RS14850	CDS	clpX	NC_014910.1	3094122	3095387	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease ATP-binding subunit ClpX	complement(3094122..3095387)	Alicycliphilus denitrificans BC	
ALIDE_RS14855	CDS	clpP	NC_014910.1	3095487	3096095	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp endopeptidase proteolytic subunit ClpP	complement(3095487..3096095)	Alicycliphilus denitrificans BC	
ALIDE_RS14860	CDS	tig	NC_014910.1	3096220	3097530	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; trigger factor	complement(3096220..3097530)	Alicycliphilus denitrificans BC	
ALIDE_RS14870	CDS	ALIDE_RS14870	NC_014910.1	3097754	3100873	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter permease subunit	complement(3097754..3100873)	Alicycliphilus denitrificans BC	
ALIDE_RS14875	CDS	ALIDE_RS14875	NC_014910.1	3100883	3102154	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	complement(3100883..3102154)	Alicycliphilus denitrificans BC	
ALIDE_RS14880	CDS	hpnC	NC_014910.1	3102247	3103125	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; squalene synthase HpnC	3102247..3103125	Alicycliphilus denitrificans BC	
ALIDE_RS14885	CDS	hpnD	NC_014910.1	3103239	3104078	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; presqualene diphosphate synthase HpnD	3103239..3104078	Alicycliphilus denitrificans BC	
ALIDE_RS14890	CDS	ALIDE_RS14890	NC_014910.1	3104110	3105744	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	complement(3104110..3105744)	Alicycliphilus denitrificans BC	
ALIDE_RS14895	CDS	hpnE	NC_014910.1	3105927	3107219	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxysqualene dehydroxylase HpnE	3105927..3107219	Alicycliphilus denitrificans BC	
ALIDE_RS14900	CDS	ALIDE_RS14900	NC_014910.1	3107233	3109257	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2868 domain-containing protein	3107233..3109257	Alicycliphilus denitrificans BC	
ALIDE_RS14905	CDS	ALIDE_RS14905	NC_014910.1	3109459	3110712	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YhjD/YihY/BrkB family envelope integrity protein	complement(3109459..3110712)	Alicycliphilus denitrificans BC	
ALIDE_RS14910	CDS	ALIDE_RS14910	NC_014910.1	3110734	3111162	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2069 domain-containing protein	3110734..3111162	Alicycliphilus denitrificans BC	
ALIDE_RS14915	CDS	ALIDE_RS14915	NC_014910.1	3111159	3112583	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding oxidoreductase	3111159..3112583	Alicycliphilus denitrificans BC	
ALIDE_RS14920	CDS	ALIDE_RS14920	NC_014910.1	3112636	3113451	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidylate synthase	3112636..3113451	Alicycliphilus denitrificans BC	
ALIDE_RS14925	CDS	ALIDE_RS14925	NC_014910.1	3113448	3113945	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrofolate reductase	3113448..3113945	Alicycliphilus denitrificans BC	
ALIDE_RS14930	CDS	ALIDE_RS14930	NC_014910.1	3113911	3114465	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2894 domain-containing protein	complement(3113911..3114465)	Alicycliphilus denitrificans BC	
ALIDE_RS14935	CDS	ALIDE_RS14935	NC_014910.1	3114476	3115129	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; OmpA family protein	complement(3114476..3115129)	Alicycliphilus denitrificans BC	
ALIDE_RS14940	CDS	ALIDE_RS14940	NC_014910.1	3115126	3117213	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF802 domain-containing protein	complement(3115126..3117213)	Alicycliphilus denitrificans BC	
ALIDE_RS14945	CDS	ALIDE_RS14945	NC_014910.1	3117210	3117881	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3348 family protein	complement(3117210..3117881)	Alicycliphilus denitrificans BC	
ALIDE_RS23530	CDS	ALIDE_RS23530	NC_014910.1	3118069	3118829	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS5 family transposase	complement(join(3118069..3118484,3118484..3118829))	Alicycliphilus denitrificans BC	
ALIDE_RS14960	CDS	ALIDE_RS14960	NC_014910.1	3118906	3119616	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	complement(3118906..3119616)	Alicycliphilus denitrificans BC	
ALIDE_RS14965	CDS	ALIDE_RS14965	NC_014910.1	3119621	3122350	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase KdpD	complement(3119621..3122350)	Alicycliphilus denitrificans BC	
ALIDE_RS14970	CDS	kdpC	NC_014910.1	3122366	3122998	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit KdpC	complement(3122366..3122998)	Alicycliphilus denitrificans BC	
ALIDE_RS14975	CDS	kdpB	NC_014910.1	3123012	3125036	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit KdpB	complement(3123012..3125036)	Alicycliphilus denitrificans BC	
ALIDE_RS14980	CDS	kdpA	NC_014910.1	3125048	3126748	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit KdpA	complement(3125048..3126748)	Alicycliphilus denitrificans BC	
ALIDE_RS14985	CDS	ALIDE_RS14985	NC_014910.1	3126961	3127251	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3126961..3127251	Alicycliphilus denitrificans BC	
ALIDE_RS14990	CDS	xth	NC_014910.1	3127258	3128034	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease III	3127258..3128034	Alicycliphilus denitrificans BC	
ALIDE_RS14995	CDS	ntrC	NC_014910.1	3128358	3129797	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(I)	complement(3128358..3129797)	Alicycliphilus denitrificans BC	
ALIDE_RS15000	CDS	glnL	NC_014910.1	3129839	3130909	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(II)	complement(3129839..3130909)	Alicycliphilus denitrificans BC	
ALIDE_RS15005	CDS	ALIDE_RS15005	NC_014910.1	3130934	3131422	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3130934..3131422)	Alicycliphilus denitrificans BC	
ALIDE_RS15010	CDS	glnA	NC_014910.1	3131596	3133011	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type I glutamate--ammonia ligase	complement(3131596..3133011)	Alicycliphilus denitrificans BC	
ALIDE_RS15015	CDS	ALIDE_RS15015	NC_014910.1	3133183	3134004	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-binding protein	complement(3133183..3134004)	Alicycliphilus denitrificans BC	
ALIDE_RS15020	CDS	ALIDE_RS15020	NC_014910.1	3134001	3134894	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; EI24 domain-containing protein	complement(3134001..3134894)	Alicycliphilus denitrificans BC	
ALIDE_RS15025	CDS	ALIDE_RS15025	NC_014910.1	3134922	3135908	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sterol desaturase family protein	complement(3134922..3135908)	Alicycliphilus denitrificans BC	
ALIDE_RS15030	CDS	ALIDE_RS15030	NC_014910.1	3135962	3136765	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; polysaccharide deacetylase family protein	complement(3135962..3136765)	Alicycliphilus denitrificans BC	
ALIDE_RS15035	CDS	ALIDE_RS15035	NC_014910.1	3136779	3137735	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-propeller fold lactonase family protein	complement(3136779..3137735)	Alicycliphilus denitrificans BC	
ALIDE_RS15040	CDS	ALIDE_RS15040	NC_014910.1	3137852	3138589	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA pseudouridine(516) synthase	complement(3137852..3138589)	Alicycliphilus denitrificans BC	
ALIDE_RS15070	CDS	ALIDE_RS15070	NC_014910.1	3144441	3144965	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosyltransferase	complement(3144441..3144965)	Alicycliphilus denitrificans BC	
ALIDE_RS15075	CDS	ALIDE_RS15075	NC_014910.1	3145037	3146413	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylosuccinate synthase	complement(3145037..3146413)	Alicycliphilus denitrificans BC	
ALIDE_RS15080	CDS	ALIDE_RS15080	NC_014910.1	3146441	3147589	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP phosphoribosyltransferase regulatory subunit	complement(3146441..3147589)	Alicycliphilus denitrificans BC	
ALIDE_RS15085	CDS	ALIDE_RS15085	NC_014910.1	3147664	3147852	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2065 domain-containing protein	complement(3147664..3147852)	Alicycliphilus denitrificans BC	
ALIDE_RS15090	CDS	hflC	NC_014910.1	3147881	3148795	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; protease modulator HflC	complement(3147881..3148795)	Alicycliphilus denitrificans BC	
ALIDE_RS15095	CDS	hflK	NC_014910.1	3148805	3150181	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FtsH protease activity modulator HflK	complement(3148805..3150181)	Alicycliphilus denitrificans BC	
ALIDE_RS15100	CDS	hflX	NC_014910.1	3150234	3151412	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase HflX	complement(3150234..3151412)	Alicycliphilus denitrificans BC	
ALIDE_RS15105	CDS	hfq	NC_014910.1	3151477	3151725	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone Hfq	complement(3151477..3151725)	Alicycliphilus denitrificans BC	
ALIDE_RS15110	CDS	der	NC_014910.1	3151803	3153146	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome biogenesis GTPase Der	complement(3151803..3153146)	Alicycliphilus denitrificans BC	
ALIDE_RS15115	CDS	bamB	NC_014910.1	3153165	3154313	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein assembly factor BamB	complement(3153165..3154313)	Alicycliphilus denitrificans BC	
ALIDE_RS15120	CDS	ALIDE_RS15120	NC_014910.1	3154310	3154990	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tetratricopeptide repeat protein	complement(3154310..3154990)	Alicycliphilus denitrificans BC	
ALIDE_RS15125	CDS	hisS	NC_014910.1	3155006	3156295	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine--tRNA ligase	complement(3155006..3156295)	Alicycliphilus denitrificans BC	
ALIDE_RS15130	CDS	ispG	NC_014910.1	3156378	3157652	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	complement(3156378..3157652)	Alicycliphilus denitrificans BC	
ALIDE_RS15135	CDS	ALIDE_RS15135	NC_014910.1	3157653	3158537	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	complement(3157653..3158537)	Alicycliphilus denitrificans BC	
ALIDE_RS15140	CDS	pilW	NC_014910.1	3158542	3159369	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pilus biogenesis/stability protein PilW	complement(3158542..3159369)	Alicycliphilus denitrificans BC	
ALIDE_RS15145	CDS	rlmN	NC_014910.1	3159391	3160515	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	complement(3159391..3160515)	Alicycliphilus denitrificans BC	
ALIDE_RS15150	CDS	ndk	NC_014910.1	3160603	3161028	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside-diphosphate kinase	complement(3160603..3161028)	Alicycliphilus denitrificans BC	
ALIDE_RS15155	CDS	ALIDE_RS15155	NC_014910.1	3161107	3162462	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pseudouridine synthase	complement(3161107..3162462)	Alicycliphilus denitrificans BC	
ALIDE_RS15160	CDS	scpB	NC_014910.1	3162464	3163132	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SMC-Scp complex subunit ScpB	complement(3162464..3163132)	Alicycliphilus denitrificans BC	
ALIDE_RS15165	CDS	ALIDE_RS15165	NC_014910.1	3163301	3164284	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RluA family pseudouridine synthase	complement(3163301..3164284)	Alicycliphilus denitrificans BC	
ALIDE_RS15170	CDS	ALIDE_RS15170	NC_014910.1	3164308	3165210	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan DD-metalloendopeptidase family protein	complement(3164308..3165210)	Alicycliphilus denitrificans BC	
ALIDE_RS15175	CDS	ALIDE_RS15175	NC_014910.1	3165222	3165995	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-L-isoaspartate(D-aspartate) O-methyltransferase	complement(3165222..3165995)	Alicycliphilus denitrificans BC	
ALIDE_RS15180	CDS	surE	NC_014910.1	3165995	3166777	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'/3'-nucleotidase SurE	complement(3165995..3166777)	Alicycliphilus denitrificans BC	
ALIDE_RS15185	CDS	ALIDE_RS15185	NC_014910.1	3166939	3168462	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GGDEF domain-containing protein	3166939..3168462	Alicycliphilus denitrificans BC	
ALIDE_RS15190	CDS	ALIDE_RS15190	NC_014910.1	3168489	3170069	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alkaline phosphatase D family protein	3168489..3170069	Alicycliphilus denitrificans BC	
ALIDE_RS15195	CDS	ALIDE_RS15195	NC_014910.1	3170106	3171020	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(3170106..3171020)	Alicycliphilus denitrificans BC	
ALIDE_RS15200	CDS	ALIDE_RS15200	NC_014910.1	3171133	3172329	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-hydroxy acid oxidase	3171133..3172329	Alicycliphilus denitrificans BC	
ALIDE_RS15205	CDS	ALIDE_RS15205	NC_014910.1	3172368	3173354	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein BugE	3172368..3173354	Alicycliphilus denitrificans BC	
ALIDE_RS15210	CDS	ALIDE_RS15210	NC_014910.1	3173390	3173695	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3173390..3173695)	Alicycliphilus denitrificans BC	
ALIDE_RS24790	CDS	ALIDE_RS24790	NC_014910.1	3173874	3174014	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent monooxygenase	complement(<3173874..3174014)	Alicycliphilus denitrificans BC	
ALIDE_RS24795	CDS	ALIDE_RS24795	NC_014910.1	3174179	3174400	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3174179..3174400)	Alicycliphilus denitrificans BC	
ALIDE_RS24945	CDS	ALIDE_RS24945	NC_014910.1	3174444	3174833	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	complement(<3174444..3174833)	Alicycliphilus denitrificans BC	
ALIDE_RS24805	CDS	ALIDE_RS24805	NC_014910.1	3174836	3175114	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3174836..3175114)	Alicycliphilus denitrificans BC	
ALIDE_RS15220	CDS	ALIDE_RS15220	NC_014910.1	3175196	3176032	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarylacetoacetate hydrolase family protein	complement(3175196..3176032)	Alicycliphilus denitrificans BC	
ALIDE_RS15225	CDS	ALIDE_RS15225	NC_014910.1	3176150	3176824	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	3176150..3176824	Alicycliphilus denitrificans BC	
ALIDE_RS15230	CDS	mutS	NC_014910.1	3177147	3179759	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein MutS	3177147..3179759	Alicycliphilus denitrificans BC	
ALIDE_RS15235	CDS	ALIDE_RS15235	NC_014910.1	3179772	3181184	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux transporter outer membrane subunit	complement(3179772..3181184)	Alicycliphilus denitrificans BC	
ALIDE_RS15240	CDS	ALIDE_RS15240	NC_014910.1	3181187	3184312	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter permease subunit	complement(3181187..3184312)	Alicycliphilus denitrificans BC	
ALIDE_RS15245	CDS	ALIDE_RS15245	NC_014910.1	3184433	3187549	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MdtB/MuxB family multidrug efflux RND transporter permease subunit	complement(3184433..3187549)	Alicycliphilus denitrificans BC	
ALIDE_RS15250	CDS	ALIDE_RS15250	NC_014910.1	3187586	3189010	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	complement(3187586..3189010)	Alicycliphilus denitrificans BC	
ALIDE_RS15255	CDS	ALIDE_RS15255	NC_014910.1	3189322	3190134	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	3189322..3190134	Alicycliphilus denitrificans BC	
ALIDE_RS15260	CDS	ALIDE_RS15260	NC_014910.1	3190150	3190974	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; undecaprenyl-diphosphate phosphatase	complement(3190150..3190974)	Alicycliphilus denitrificans BC	
ALIDE_RS15265	CDS	ALIDE_RS15265	NC_014910.1	3191161	3191712	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF6622 family protein	3191161..3191712	Alicycliphilus denitrificans BC	
ALIDE_RS15270	CDS	ALIDE_RS15270	NC_014910.1	3191724	3192095	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2TM domain-containing protein	3191724..3192095	Alicycliphilus denitrificans BC	
ALIDE_RS15275	CDS	ALIDE_RS15275	NC_014910.1	3192105	3193160	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase	3192105..3193160	Alicycliphilus denitrificans BC	
ALIDE_RS15280	CDS	ALIDE_RS15280	NC_014910.1	3193129	3193935	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LytTR family DNA-binding domain-containing protein	3193129..3193935	Alicycliphilus denitrificans BC	
ALIDE_RS15285	CDS	ALIDE_RS15285	NC_014910.1	3194112	3195317	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	3194112..3195317	Alicycliphilus denitrificans BC	
ALIDE_RS15290	CDS	ALIDE_RS15290	NC_014910.1	3195343	3196581	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	3195343..3196581	Alicycliphilus denitrificans BC	
ALIDE_RS15295	CDS	ALIDE_RS15295	NC_014910.1	3196633	3197853	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent monooxygenase	complement(3196633..3197853)	Alicycliphilus denitrificans BC	
ALIDE_RS15300	CDS	ALIDE_RS15300	NC_014910.1	3197876	3200782	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aconitate hydratase	complement(3197876..3200782)	Alicycliphilus denitrificans BC	
ALIDE_RS15305	CDS	ALIDE_RS15305	NC_014910.1	3201055	3201351	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; H-NS histone family protein	complement(3201055..3201351)	Alicycliphilus denitrificans BC	
ALIDE_RS15310	CDS	ALIDE_RS15310	NC_014910.1	3201667	3202512	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; symmetrical bis(5'-nucleosyl)-tetraphosphatase	3201667..3202512	Alicycliphilus denitrificans BC	
ALIDE_RS15315	CDS	ALIDE_RS15315	NC_014910.1	3202614	3203654	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD:protein FMN transferase	complement(3202614..3203654)	Alicycliphilus denitrificans BC	
ALIDE_RS15320	CDS	ALIDE_RS15320	NC_014910.1	3203674	3204087	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome	complement(3203674..3204087)	Alicycliphilus denitrificans BC	
ALIDE_RS15325	CDS	ALIDE_RS15325	NC_014910.1	3204315	3204674	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3204315..3204674	Alicycliphilus denitrificans BC	
ALIDE_RS15330	CDS	nosZ	NC_014910.1	3204696	3206630	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TAT-dependent nitrous-oxide reductase	3204696..3206630	Alicycliphilus denitrificans BC	
ALIDE_RS15335	CDS	ALIDE_RS15335	NC_014910.1	3206694	3209315	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NosR/NirI family protein	3206694..3209315	Alicycliphilus denitrificans BC	
ALIDE_RS15340	CDS	ALIDE_RS15340	NC_014910.1	3209312	3210580	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrous oxide reductase family maturation protein NosD	3209312..3210580	Alicycliphilus denitrificans BC	
ALIDE_RS15345	CDS	ALIDE_RS15345	NC_014910.1	3210585	3211487	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	3210585..3211487	Alicycliphilus denitrificans BC	
ALIDE_RS15350	CDS	ALIDE_RS15350	NC_014910.1	3211503	3212318	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease subunit	3211503..3212318	Alicycliphilus denitrificans BC	
ALIDE_RS15355	CDS	ALIDE_RS15355	NC_014910.1	3212315	3212851	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrous oxide reductase accessory protein NosL	3212315..3212851	Alicycliphilus denitrificans BC	
ALIDE_RS15360	CDS	ALIDE_RS15360	NC_014910.1	3212963	3213511	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrous oxide reductase accessory protein NosL	3212963..3213511	Alicycliphilus denitrificans BC	
ALIDE_RS15365	CDS	ALIDE_RS15365	NC_014910.1	3213612	3215054	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DEAD/DEAH box helicase	complement(3213612..3215054)	Alicycliphilus denitrificans BC	
ALIDE_RS15370	CDS	ALIDE_RS15370	NC_014910.1	3215143	3216006	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; neutral zinc metallopeptidase	complement(3215143..3216006)	Alicycliphilus denitrificans BC	
ALIDE_RS15375	CDS	dcd	NC_014910.1	3216071	3216637	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dCTP deaminase	complement(3216071..3216637)	Alicycliphilus denitrificans BC	
ALIDE_RS15380	CDS	ALIDE_RS15380	NC_014910.1	3216755	3217972	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; urate hydroxylase PuuD	complement(3216755..3217972)	Alicycliphilus denitrificans BC	
ALIDE_RS15385	CDS	xdhC	NC_014910.1	3218254	3219087	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase accessory protein XdhC	complement(3218254..3219087)	Alicycliphilus denitrificans BC	
ALIDE_RS15390	CDS	ALIDE_RS15390	NC_014910.1	3219225	3219677	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3219225..3219677	Alicycliphilus denitrificans BC	
ALIDE_RS15395	CDS	uraH	NC_014910.1	3219836	3220186	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyisourate hydrolase	complement(3219836..3220186)	Alicycliphilus denitrificans BC	
ALIDE_RS15400	CDS	ggt	NC_014910.1	3220329	3222119	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyltransferase	3220329..3222119	Alicycliphilus denitrificans BC	
ALIDE_RS15405	CDS	ALIDE_RS15405	NC_014910.1	3222116	3222661	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3222116..3222661)	Alicycliphilus denitrificans BC	
ALIDE_RS23540	CDS	ALIDE_RS23540	NC_014910.1	3222799	3222974	R	frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)-dependent alcohol dehydrogenase	complement(<3222799..>3222974)	Alicycliphilus denitrificans BC	
ALIDE_RS15410	CDS	glxR	NC_014910.1	3223154	3224068	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-hydroxy-3-oxopropionate reductase	complement(3223154..3224068)	Alicycliphilus denitrificans BC	
ALIDE_RS15415	CDS	hyi	NC_014910.1	3224116	3224916	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxypyruvate isomerase	complement(3224116..3224916)	Alicycliphilus denitrificans BC	
ALIDE_RS15420	CDS	gcl	NC_014910.1	3224946	3226736	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glyoxylate carboligase	complement(3224946..3226736)	Alicycliphilus denitrificans BC	
ALIDE_RS15425	CDS	ALIDE_RS15425	NC_014910.1	3226847	3227776	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	3226847..3227776	Alicycliphilus denitrificans BC	
ALIDE_RS15430	CDS	ALIDE_RS15430	NC_014910.1	3227855	3228745	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein	complement(3227855..3228745)	Alicycliphilus denitrificans BC	
ALIDE_RS15435	CDS	ALIDE_RS15435	NC_014910.1	3228797	3230125	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate aminotransferase family protein	complement(3228797..3230125)	Alicycliphilus denitrificans BC	
ALIDE_RS15440	CDS	ALIDE_RS15440	NC_014910.1	3230323	3231216	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	3230323..3231216	Alicycliphilus denitrificans BC	
ALIDE_RS15445	CDS	ALIDE_RS15445	NC_014910.1	3231244	3232566	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase	complement(3231244..3232566)	Alicycliphilus denitrificans BC	
ALIDE_RS15450	CDS	ALIDE_RS15450	NC_014910.1	3232645	3233628	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3232645..3233628)	Alicycliphilus denitrificans BC	
ALIDE_RS15455	CDS	ALIDE_RS15455	NC_014910.1	3233663	3234730	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tartrate dehydrogenase	complement(3233663..3234730)	Alicycliphilus denitrificans BC	
ALIDE_RS15460	CDS	ALIDE_RS15460	NC_014910.1	3234857	3235771	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	3234857..3235771	Alicycliphilus denitrificans BC	
ALIDE_RS15465	CDS	ALIDE_RS15465	NC_014910.1	3235826	3236503	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	3235826..3236503	Alicycliphilus denitrificans BC	
ALIDE_RS15470	CDS	puuE	NC_014910.1	3236500	3237459	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; allantoinase PuuE	3236500..3237459	Alicycliphilus denitrificans BC	
ALIDE_RS15475	CDS	uraD	NC_014910.1	3237524	3239299	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	3237524..3239299	Alicycliphilus denitrificans BC	
ALIDE_RS15480	CDS	ALIDE_RS15480	NC_014910.1	3239296	3240549	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; M20/M25/M40 family metallo-hydrolase	3239296..3240549	Alicycliphilus denitrificans BC	
ALIDE_RS15485	CDS	ALIDE_RS15485	NC_014910.1	3240611	3241036	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; EAL domain-containing protein	complement(3240611..3241036)	Alicycliphilus denitrificans BC	
ALIDE_RS15490	CDS	ALIDE_RS15490	NC_014910.1	3241052	3241237	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3241052..3241237)	Alicycliphilus denitrificans BC	
ALIDE_RS15500	CDS	ALIDE_RS15500	NC_014910.1	3241738	3243213	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	complement(3241738..3243213)	Alicycliphilus denitrificans BC	
ALIDE_RS15505	CDS	ALIDE_RS15505	NC_014910.1	3243564	3245051	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleobase:cation symporter-2 family protein	3243564..3245051	Alicycliphilus denitrificans BC	
ALIDE_RS15510	CDS	ALIDE_RS15510	NC_014910.1	3245189	3247498	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADP-dependent malic enzyme	3245189..3247498	Alicycliphilus denitrificans BC	
ALIDE_RS15515	CDS	ALIDE_RS15515	NC_014910.1	3247568	3248143	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YceI family protein	complement(3247568..3248143)	Alicycliphilus denitrificans BC	
ALIDE_RS15520	CDS	ALIDE_RS15520	NC_014910.1	3248198	3248779	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YceI family protein	complement(3248198..3248779)	Alicycliphilus denitrificans BC	
ALIDE_RS15525	CDS	ALIDE_RS15525	NC_014910.1	3248815	3249402	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome b	complement(3248815..3249402)	Alicycliphilus denitrificans BC	
ALIDE_RS15530	CDS	ALIDE_RS15530	NC_014910.1	3249660	3250349	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3334 family protein	3249660..3250349	Alicycliphilus denitrificans BC	
ALIDE_RS15535	CDS	ALIDE_RS15535	NC_014910.1	3250527	3251015	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxiredoxin	3250527..3251015	Alicycliphilus denitrificans BC	
ALIDE_RS15540	CDS	ALIDE_RS15540	NC_014910.1	3251172	3252911	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoH family protein	3251172..3252911	Alicycliphilus denitrificans BC	
ALIDE_RS15545	CDS	ALIDE_RS15545	NC_014910.1	3252983	3254515	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase family protein	complement(3252983..3254515)	Alicycliphilus denitrificans BC	
ALIDE_RS15550	CDS	dnaB	NC_014910.1	3254586	3256001	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; replicative DNA helicase	complement(3254586..3256001)	Alicycliphilus denitrificans BC	
ALIDE_RS15555	CDS	rplI	NC_014910.1	3256186	3256638	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L9	complement(3256186..3256638)	Alicycliphilus denitrificans BC	
ALIDE_RS15560	CDS	rpsR	NC_014910.1	3256653	3256934	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S18	complement(3256653..3256934)	Alicycliphilus denitrificans BC	
ALIDE_RS15565	CDS	priB	NC_014910.1	3256953	3257243	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal replication protein N	complement(3256953..3257243)	Alicycliphilus denitrificans BC	
ALIDE_RS15570	CDS	rpsF	NC_014910.1	3257266	3257640	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S6	complement(3257266..3257640)	Alicycliphilus denitrificans BC	
ALIDE_RS15575	CDS	grpE	NC_014910.1	3257876	3258418	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotide exchange factor GrpE	3257876..3258418	Alicycliphilus denitrificans BC	
ALIDE_RS15580	CDS	dnaK	NC_014910.1	3258511	3260454	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaK	3258511..3260454	Alicycliphilus denitrificans BC	
ALIDE_RS15585	CDS	dnaJ	NC_014910.1	3260550	3261683	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaJ	3260550..3261683	Alicycliphilus denitrificans BC	
ALIDE_RS15590	CDS	ALIDE_RS15590	NC_014910.1	3261898	3262563	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PEP-CTERM sorting domain-containing protein	3261898..3262563	Alicycliphilus denitrificans BC	
ALIDE_RS15595	CDS	ALIDE_RS15595	NC_014910.1	3262636	3264006	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophanase	complement(3262636..3264006)	Alicycliphilus denitrificans BC	
ALIDE_RS15600	CDS	ALIDE_RS15600	NC_014910.1	3264205	3265326	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase U32 family protein	3264205..3265326	Alicycliphilus denitrificans BC	
ALIDE_RS15605	CDS	ALIDE_RS15605	NC_014910.1	3265350	3266255	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; U32 family peptidase	3265350..3266255	Alicycliphilus denitrificans BC	
ALIDE_RS15610	CDS	ALIDE_RS15610	NC_014910.1	3266275	3266793	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SCP2 sterol-binding domain-containing protein	3266275..3266793	Alicycliphilus denitrificans BC	
ALIDE_RS15615	CDS	ALIDE_RS15615	NC_014910.1	3266790	3267197	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative zinc-binding protein	3266790..3267197	Alicycliphilus denitrificans BC	
ALIDE_RS15620	CDS	ALIDE_RS15620	NC_014910.1	3267194	3267778	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UbiX family flavin prenyltransferase	3267194..3267778	Alicycliphilus denitrificans BC	
ALIDE_RS15625	CDS	ubiD	NC_014910.1	3267834	3269318	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-3-polyprenylbenzoate decarboxylase	3267834..3269318	Alicycliphilus denitrificans BC	
ALIDE_RS15630	CDS	ALIDE_RS15630	NC_014910.1	3269337	3270485	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome P450	3269337..3270485	Alicycliphilus denitrificans BC	
ALIDE_RS15635	CDS	ALIDE_RS15635	NC_014910.1	3270526	3271890	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MBL fold metallo-hydrolase	3270526..3271890	Alicycliphilus denitrificans BC	
ALIDE_RS15640	CDS	ALIDE_RS15640	NC_014910.1	3272079	3273017	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	3272079..3273017	Alicycliphilus denitrificans BC	
ALIDE_RS15645	CDS	leuC	NC_014910.1	3273038	3274459	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase large subunit	3273038..3274459	Alicycliphilus denitrificans BC	
ALIDE_RS15650	CDS	ALIDE_RS15650	NC_014910.1	3274483	3274608	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; entericidin A/B family lipoprotein	3274483..3274608	Alicycliphilus denitrificans BC	
ALIDE_RS15655	CDS	leuD	NC_014910.1	3274632	3275282	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase small subunit	3274632..3275282	Alicycliphilus denitrificans BC	
ALIDE_RS15660	CDS	leuB	NC_014910.1	3275357	3276427	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydrogenase	3275357..3276427	Alicycliphilus denitrificans BC	
ALIDE_RS15665	CDS	asd	NC_014910.1	3276697	3277809	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate-semialdehyde dehydrogenase	3276697..3277809	Alicycliphilus denitrificans BC	
ALIDE_RS15670	CDS	ALIDE_RS15670	NC_014910.1	3278089	3280704	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FimV/HubP family polar landmark protein	3278089..3280704	Alicycliphilus denitrificans BC	
ALIDE_RS15675	CDS	truA	NC_014910.1	3280769	3281587	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine(38-40) synthase TruA	3280769..3281587	Alicycliphilus denitrificans BC	
ALIDE_RS15680	CDS	ALIDE_RS15680	NC_014910.1	3281584	3282300	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylanthranilate isomerase	3281584..3282300	Alicycliphilus denitrificans BC	
ALIDE_RS15685	CDS	trpB	NC_014910.1	3282301	3283569	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit beta	3282301..3283569	Alicycliphilus denitrificans BC	
ALIDE_RS15690	CDS	trpA	NC_014910.1	3283566	3284375	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit alpha	3283566..3284375	Alicycliphilus denitrificans BC	
ALIDE_RS15695	CDS	accD	NC_014910.1	3284404	3285276	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase, carboxyltransferase subunit beta	3284404..3285276	Alicycliphilus denitrificans BC	
ALIDE_RS15700	CDS	ALIDE_RS15700	NC_014910.1	3285353	3285901	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YggT family protein	complement(3285353..3285901)	Alicycliphilus denitrificans BC	
ALIDE_RS15705	CDS	ALIDE_RS15705	NC_014910.1	3285995	3286630	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LON peptidase substrate-binding domain-containing protein	3285995..3286630	Alicycliphilus denitrificans BC	
ALIDE_RS15710	CDS	ALIDE_RS15710	NC_014910.1	3286667	3288568	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside-diphosphate sugar epimerase/dehydratase	3286667..3288568	Alicycliphilus denitrificans BC	
ALIDE_RS15715	CDS	ALIDE_RS15715	NC_014910.1	3288565	3289797	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; oligosaccharide flippase family protein	3288565..3289797	Alicycliphilus denitrificans BC	
ALIDE_RS15720	CDS	ALIDE_RS15720	NC_014910.1	3289781	3290383	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase	3289781..3290383	Alicycliphilus denitrificans BC	
ALIDE_RS15725	CDS	ALIDE_RS15725	NC_014910.1	3290376	3291434	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase	3290376..3291434	Alicycliphilus denitrificans BC	
ALIDE_RS15730	CDS	ALIDE_RS15730	NC_014910.1	3291431	3292459	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyltransferase family 2 protein	3291431..3292459	Alicycliphilus denitrificans BC	
ALIDE_RS15735	CDS	ALIDE_RS15735	NC_014910.1	3292456	3293151	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	3292456..3293151	Alicycliphilus denitrificans BC	
ALIDE_RS15740	CDS	ALIDE_RS15740	NC_014910.1	3293148	3294320	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DegT/DnrJ/EryC1/StrS family aminotransferase	3293148..3294320	Alicycliphilus denitrificans BC	
ALIDE_RS15745	CDS	ALIDE_RS15745	NC_014910.1	3294327	3294953	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar transferase	3294327..3294953	Alicycliphilus denitrificans BC	
ALIDE_RS15750	CDS	lysS	NC_014910.1	3294993	3296540	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine--tRNA ligase	3294993..3296540	Alicycliphilus denitrificans BC	
ALIDE_RS15755	CDS	ALIDE_RS15755	NC_014910.1	3296546	3297199	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive ion channel domain-containing protein	3296546..3297199	Alicycliphilus denitrificans BC	
ALIDE_RS15760	CDS	ALIDE_RS15760	NC_014910.1	3297392	3298510	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter substrate-binding protein	3297392..3298510	Alicycliphilus denitrificans BC	
ALIDE_RS15765	CDS	livH	NC_014910.1	3298631	3299557	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; high-affinity branched-chain amino acid ABC transporter permease LivH	3298631..3299557	Alicycliphilus denitrificans BC	
ALIDE_RS15770	CDS	ALIDE_RS15770	NC_014910.1	3299557	3300816	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; high-affinity branched-chain amino acid ABC transporter permease LivM	3299557..3300816	Alicycliphilus denitrificans BC	
ALIDE_RS15775	CDS	livG	NC_014910.1	3300816	3301589	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	3300816..3301589	Alicycliphilus denitrificans BC	
ALIDE_RS15780	CDS	ALIDE_RS15780	NC_014910.1	3301589	3302299	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	3301589..3302299	Alicycliphilus denitrificans BC	
ALIDE_RS15785	CDS	ALIDE_RS15785	NC_014910.1	3302380	3303441	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent 6-phosphofructokinase	complement(3302380..3303441)	Alicycliphilus denitrificans BC	
ALIDE_RS15790	CDS	nagZ	NC_014910.1	3303444	3304526	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-N-acetylhexosaminidase	complement(3303444..3304526)	Alicycliphilus denitrificans BC	
ALIDE_RS15795	CDS	acpS	NC_014910.1	3304591	3304983	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; holo-ACP synthase	complement(3304591..3304983)	Alicycliphilus denitrificans BC	
ALIDE_RS15800	CDS	ALIDE_RS15800	NC_014910.1	3305041	3305808	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxine 5'-phosphate synthase	complement(3305041..3305808)	Alicycliphilus denitrificans BC	
ALIDE_RS15805	CDS	recO	NC_014910.1	3305805	3306578	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RecO	complement(3305805..3306578)	Alicycliphilus denitrificans BC	
ALIDE_RS15810	CDS	era	NC_014910.1	3306800	3307813	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase Era	complement(3306800..3307813)	Alicycliphilus denitrificans BC	
ALIDE_RS15815	CDS	rnc	NC_014910.1	3307810	3308496	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease III	complement(3307810..3308496)	Alicycliphilus denitrificans BC	
ALIDE_RS15820	CDS	ALIDE_RS15820	NC_014910.1	3308499	3308864	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4845 domain-containing protein	complement(3308499..3308864)	Alicycliphilus denitrificans BC	
ALIDE_RS15825	CDS	lepB	NC_014910.1	3308878	3309852	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; signal peptidase I	complement(3308878..3309852)	Alicycliphilus denitrificans BC	
ALIDE_RS15830	CDS	lepA	NC_014910.1	3309859	3311667	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; translation elongation factor 4	complement(3309859..3311667)	Alicycliphilus denitrificans BC	
ALIDE_RS15835	CDS	ALIDE_RS15835	NC_014910.1	3312092	3313570	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DegQ family serine endoprotease	complement(3312092..3313570)	Alicycliphilus denitrificans BC	
ALIDE_RS15840	CDS	ALIDE_RS15840	NC_014910.1	3313683	3314663	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MucB/RseB C-terminal domain-containing protein	complement(3313683..3314663)	Alicycliphilus denitrificans BC	
ALIDE_RS15845	CDS	ALIDE_RS15845	NC_014910.1	3314792	3315427	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-E factor negative regulatory protein	complement(3314792..3315427)	Alicycliphilus denitrificans BC	
ALIDE_RS15850	CDS	rpoE	NC_014910.1	3315467	3316102	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor RpoE	complement(3315467..3316102)	Alicycliphilus denitrificans BC	
ALIDE_RS15855	CDS	ALIDE_RS15855	NC_014910.1	3316099	3316620	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3316099..3316620)	Alicycliphilus denitrificans BC	
ALIDE_RS15860	CDS	fabF	NC_014910.1	3316683	3317927	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-ketoacyl-ACP synthase II	complement(3316683..3317927)	Alicycliphilus denitrificans BC	
ALIDE_RS15865	CDS	acpP	NC_014910.1	3317986	3318225	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl carrier protein	complement(3317986..3318225)	Alicycliphilus denitrificans BC	
ALIDE_RS15870	CDS	fabG	NC_014910.1	3318329	3319066	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP reductase FabG	complement(3318329..3319066)	Alicycliphilus denitrificans BC	
ALIDE_RS15875	CDS	fabD	NC_014910.1	3319063	3320016	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ACP S-malonyltransferase	complement(3319063..3320016)	Alicycliphilus denitrificans BC	
ALIDE_RS15880	CDS	ALIDE_RS15880	NC_014910.1	3320078	3321058	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-ketoacyl-ACP synthase III	complement(3320078..3321058)	Alicycliphilus denitrificans BC	
ALIDE_RS15885	CDS	plsX	NC_014910.1	3321080	3322111	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate acyltransferase PlsX	complement(3321080..3322111)	Alicycliphilus denitrificans BC	
ALIDE_RS15890	CDS	rpmF	NC_014910.1	3322234	3322416	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L32	complement(3322234..3322416)	Alicycliphilus denitrificans BC	
ALIDE_RS15895	CDS	ALIDE_RS15895	NC_014910.1	3322553	3323104	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YceD family protein	complement(3322553..3323104)	Alicycliphilus denitrificans BC	
ALIDE_RS15900	CDS	ALIDE_RS15900	NC_014910.1	3323131	3323730	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Maf family nucleotide pyrophosphatase	3323131..3323730	Alicycliphilus denitrificans BC	
ALIDE_RS15905	CDS	ALIDE_RS15905	NC_014910.1	3323727	3324512	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SAM-dependent methyltransferase	3323727..3324512	Alicycliphilus denitrificans BC	
ALIDE_RS15910	CDS	ALIDE_RS15910	NC_014910.1	3324517	3325557	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; S49 family peptidase	complement(3324517..3325557)	Alicycliphilus denitrificans BC	
ALIDE_RS15915	CDS	ALIDE_RS15915	NC_014910.1	3325562	3325933	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Rieske 2Fe-2S domain-containing protein	complement(3325562..3325933)	Alicycliphilus denitrificans BC	
ALIDE_RS15920	CDS	ALIDE_RS15920	NC_014910.1	3325936	3326607	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAD-IA family hydrolase	complement(3325936..3326607)	Alicycliphilus denitrificans BC	
ALIDE_RS15925	CDS	ALIDE_RS15925	NC_014910.1	3326600	3327619	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RluA family pseudouridine synthase	complement(3326600..3327619)	Alicycliphilus denitrificans BC	
ALIDE_RS15930	CDS	ALIDE_RS15930	NC_014910.1	3328209	3331277	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Rne/Rng family ribonuclease	3328209..3331277	Alicycliphilus denitrificans BC	
ALIDE_RS15935	CDS	yaaA	NC_014910.1	3331436	3332209	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxide stress protein YaaA	3331436..3332209	Alicycliphilus denitrificans BC	
ALIDE_RS15940	CDS	ALIDE_RS15940	NC_014910.1	3332206	3333060	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2OG-Fe(II) oxygenase	3332206..3333060	Alicycliphilus denitrificans BC	
ALIDE_RS15945	CDS	queF	NC_014910.1	3333116	3333961	D	Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	3333116..3333961	Alicycliphilus denitrificans BC	
ALIDE_RS15950	CDS	ALIDE_RS15950	NC_014910.1	3333991	3335553	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PAS domain-containing methyl-accepting chemotaxis protein	complement(3333991..3335553)	Alicycliphilus denitrificans BC	
ALIDE_RS15955	CDS	dinB	NC_014910.1	3335715	3336908	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase IV	complement(3335715..3336908)	Alicycliphilus denitrificans BC	
ALIDE_RS15960	CDS	ALIDE_RS15960	NC_014910.1	3336984	3337877	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(3336984..3337877)	Alicycliphilus denitrificans BC	
ALIDE_RS15965	CDS	ALIDE_RS15965	NC_014910.1	3338014	3338982	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3338014..3338982	Alicycliphilus denitrificans BC	
ALIDE_RS15970	CDS	ALIDE_RS15970	NC_014910.1	3339013	3340239	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	3339013..3340239	Alicycliphilus denitrificans BC	
ALIDE_RS15975	CDS	ALIDE_RS15975	NC_014910.1	3340276	3342114	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	3340276..3342114	Alicycliphilus denitrificans BC	
ALIDE_RS15980	CDS	ALIDE_RS15980	NC_014910.1	3342127	3343059	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	complement(3342127..3343059)	Alicycliphilus denitrificans BC	
ALIDE_RS15985	CDS	ALIDE_RS15985	NC_014910.1	3343232	3344404	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-hydroxy acid oxidase	complement(3343232..3344404)	Alicycliphilus denitrificans BC	
ALIDE_RS15990	CDS	ALIDE_RS15990	NC_014910.1	3344496	3345002	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; OmpA family protein	complement(3344496..3345002)	Alicycliphilus denitrificans BC	
ALIDE_RS15995	CDS	ALIDE_RS15995	NC_014910.1	3345008	3346240	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase	complement(3345008..3346240)	Alicycliphilus denitrificans BC	
ALIDE_RS16000	CDS	ALIDE_RS16000	NC_014910.1	3346261	3346782	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YfiR family protein	complement(3346261..3346782)	Alicycliphilus denitrificans BC	
ALIDE_RS16005	CDS	pbpC	NC_014910.1	3346847	3349012	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 1C	complement(3346847..3349012)	Alicycliphilus denitrificans BC	
ALIDE_RS16010	CDS	ALIDE_RS16010	NC_014910.1	3349012	3349893	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3349012..3349893)	Alicycliphilus denitrificans BC	
ALIDE_RS16015	CDS	ALIDE_RS16015	NC_014910.1	3350218	3351465	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(3350218..3351465)	Alicycliphilus denitrificans BC	
ALIDE_RS16020	CDS	ALIDE_RS16020	NC_014910.1	3351599	3353248	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3351599..3353248)	Alicycliphilus denitrificans BC	
ALIDE_RS16025	CDS	ALIDE_RS16025	NC_014910.1	3353245	3355344	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate--CoA ligase family protein	complement(3353245..3355344)	Alicycliphilus denitrificans BC	
ALIDE_RS16030	CDS	ALIDE_RS16030	NC_014910.1	3355344	3356501	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3355344..3356501)	Alicycliphilus denitrificans BC	
ALIDE_RS16035	CDS	ALIDE_RS16035	NC_014910.1	3356541	3357536	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; asparaginase	complement(3356541..3357536)	Alicycliphilus denitrificans BC	
ALIDE_RS16040	CDS	ALIDE_RS16040	NC_014910.1	3357544	3358536	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3357544..3358536)	Alicycliphilus denitrificans BC	
ALIDE_RS16045	CDS	ALIDE_RS16045	NC_014910.1	3358669	3359550	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	3358669..3359550	Alicycliphilus denitrificans BC	
ALIDE_RS16050	CDS	ALIDE_RS16050	NC_014910.1	3359657	3360739	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; metallophosphoesterase	complement(3359657..3360739)	Alicycliphilus denitrificans BC	
ALIDE_RS16055	CDS	ALIDE_RS16055	NC_014910.1	3360774	3366710	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MG2 domain-containing protein	complement(3360774..3366710)	Alicycliphilus denitrificans BC	
ALIDE_RS16060	CDS	ALIDE_RS16060	NC_014910.1	3366842	3367816	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Bug family tripartite tricarboxylate transporter substrate binding protein	complement(3366842..3367816)	Alicycliphilus denitrificans BC	
ALIDE_RS16065	CDS	argH	NC_014910.1	3367834	3369294	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; argininosuccinate lyase	complement(3367834..3369294)	Alicycliphilus denitrificans BC	
ALIDE_RS16070	CDS	ALIDE_RS16070	NC_014910.1	3369345	3370409	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase	3369345..3370409	Alicycliphilus denitrificans BC	
ALIDE_RS16075	CDS	ALIDE_RS16075	NC_014910.1	3370546	3371331	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MetQ/NlpA family ABC transporter substrate-binding protein	3370546..3371331	Alicycliphilus denitrificans BC	
ALIDE_RS16080	CDS	ALIDE_RS16080	NC_014910.1	3371458	3373089	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SpoVR family protein	complement(3371458..3373089)	Alicycliphilus denitrificans BC	
ALIDE_RS16085	CDS	ALIDE_RS16085	NC_014910.1	3373086	3374354	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YeaH/YhbH family protein	complement(3373086..3374354)	Alicycliphilus denitrificans BC	
ALIDE_RS16090	CDS	ALIDE_RS16090	NC_014910.1	3374399	3376321	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PrkA family serine protein kinase	complement(3374399..3376321)	Alicycliphilus denitrificans BC	
ALIDE_RS16095	CDS	ALIDE_RS16095	NC_014910.1	3376622	3377113	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Rrf2 family transcriptional regulator	complement(3376622..3377113)	Alicycliphilus denitrificans BC	
ALIDE_RS16100	CDS	ytfE	NC_014910.1	3377208	3377930	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster repair protein YtfE	3377208..3377930	Alicycliphilus denitrificans BC	
ALIDE_RS16105	CDS	ALIDE_RS16105	NC_014910.1	3377933	3378304	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; group III truncated hemoglobin	3377933..3378304	Alicycliphilus denitrificans BC	
ALIDE_RS16110	CDS	ALIDE_RS16110	NC_014910.1	3378301	3378525	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3820 family protein	complement(3378301..3378525)	Alicycliphilus denitrificans BC	
ALIDE_RS16115	CDS	ALIDE_RS16115	NC_014910.1	3378525	3378965	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CopD family protein	complement(3378525..3378965)	Alicycliphilus denitrificans BC	
ALIDE_RS16120	CDS	ALIDE_RS16120	NC_014910.1	3378968	3379969	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldo/keto reductase	complement(3378968..3379969)	Alicycliphilus denitrificans BC	
ALIDE_RS16125	CDS	ALIDE_RS16125	NC_014910.1	3380047	3380247	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SlyX family protein	complement(3380047..3380247)	Alicycliphilus denitrificans BC	
ALIDE_RS16130	CDS	ALIDE_RS16130	NC_014910.1	3380249	3381442	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PLP-dependent aminotransferase family protein	complement(3380249..3381442)	Alicycliphilus denitrificans BC	
ALIDE_RS16135	CDS	ALIDE_RS16135	NC_014910.1	3381595	3382065	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GyrI-like domain-containing protein	3381595..3382065	Alicycliphilus denitrificans BC	
ALIDE_RS16140	CDS	ALIDE_RS16140	NC_014910.1	3382062	3383048	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3382062..3383048)	Alicycliphilus denitrificans BC	
ALIDE_RS16145	CDS	ALIDE_RS16145	NC_014910.1	3383083	3384546	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidase	complement(3383083..3384546)	Alicycliphilus denitrificans BC	
ALIDE_RS16150	CDS	ALIDE_RS16150	NC_014910.1	3384657	3385610	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	3384657..3385610	Alicycliphilus denitrificans BC	
ALIDE_RS16155	CDS	nth	NC_014910.1	3385607	3386245	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease III	3385607..3386245	Alicycliphilus denitrificans BC	
ALIDE_RS16160	CDS	ALIDE_RS16160	NC_014910.1	3386262	3386765	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; macro domain-containing protein	complement(3386262..3386765)	Alicycliphilus denitrificans BC	
ALIDE_RS16165	CDS	cobT	NC_014910.1	3386855	3387913	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	complement(3386855..3387913)	Alicycliphilus denitrificans BC	
ALIDE_RS16170	CDS	ALIDE_RS16170	NC_014910.1	3387972	3389444	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cobyric acid synthase	complement(3387972..3389444)	Alicycliphilus denitrificans BC	
ALIDE_RS16175	CDS	ALIDE_RS16175	NC_014910.1	3389441	3390427	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	complement(3389441..3390427)	Alicycliphilus denitrificans BC	
ALIDE_RS16180	CDS	cbiB	NC_014910.1	3390420	3391394	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylcobinamide-phosphate synthase CbiB	complement(3390420..3391394)	Alicycliphilus denitrificans BC	
ALIDE_RS16185	CDS	ALIDE_RS16185	NC_014910.1	3391513	3392109	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GspH/FimT family pseudopilin	3391513..3392109	Alicycliphilus denitrificans BC	
ALIDE_RS16190	CDS	pilV	NC_014910.1	3392116	3392757	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pilus modification protein PilV	3392116..3392757	Alicycliphilus denitrificans BC	
ALIDE_RS16195	CDS	ALIDE_RS16195	NC_014910.1	3392760	3393635	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PilW family protein	3392760..3393635	Alicycliphilus denitrificans BC	
ALIDE_RS16200	CDS	ALIDE_RS16200	NC_014910.1	3393647	3394396	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PilX N-terminal domain-containing pilus assembly protein	3393647..3394396	Alicycliphilus denitrificans BC	
ALIDE_RS16205	CDS	ALIDE_RS16205	NC_014910.1	3394488	3398225	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PilC/PilY family type IV pilus protein	3394488..3398225	Alicycliphilus denitrificans BC	
ALIDE_RS16210	CDS	ALIDE_RS16210	NC_014910.1	3398236	3398670	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pilin protein	3398236..3398670	Alicycliphilus denitrificans BC	
ALIDE_RS16215	CDS	ribD	NC_014910.1	3398708	3399820	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	3398708..3399820	Alicycliphilus denitrificans BC	
ALIDE_RS16220	CDS	ALIDE_RS16220	NC_014910.1	3399844	3401454	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipase D family protein	3399844..3401454	Alicycliphilus denitrificans BC	
ALIDE_RS16225	CDS	ALIDE_RS16225	NC_014910.1	3401414	3402433	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase	complement(3401414..3402433)	Alicycliphilus denitrificans BC	
ALIDE_RS16230	CDS	ALIDE_RS16230	NC_014910.1	3402489	3403628	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	complement(3402489..3403628)	Alicycliphilus denitrificans BC	
ALIDE_RS16235	CDS	ALIDE_RS16235	NC_014910.1	3403654	3404175	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family N-acetyltransferase	complement(3403654..3404175)	Alicycliphilus denitrificans BC	
ALIDE_RS16240	CDS	ALIDE_RS16240	NC_014910.1	3404252	3405712	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; coniferyl aldehyde dehydrogenase	complement(3404252..3405712)	Alicycliphilus denitrificans BC	
ALIDE_RS16245	CDS	ALIDE_RS16245	NC_014910.1	3405832	3406146	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3405832..3406146)	Alicycliphilus denitrificans BC	
ALIDE_RS16250	CDS	clpB	NC_014910.1	3406210	3408813	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent chaperone ClpB	complement(3406210..3408813)	Alicycliphilus denitrificans BC	
ALIDE_RS16255	CDS	moaE	NC_014910.1	3408881	3409357	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin synthase catalytic subunit MoaE	complement(3408881..3409357)	Alicycliphilus denitrificans BC	
ALIDE_RS16260	CDS	ALIDE_RS16260	NC_014910.1	3409414	3409668	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3409414..3409668	Alicycliphilus denitrificans BC	
ALIDE_RS23545	CDS	ALIDE_RS23545	NC_014910.1	3409781	3409924	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3149 domain-containing protein	3409781..3409924	Alicycliphilus denitrificans BC	
ALIDE_RS16265	CDS	ALIDE_RS16265	NC_014910.1	3410007	3410318	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3410007..3410318	Alicycliphilus denitrificans BC	
ALIDE_RS16270	CDS	dapA	NC_014910.1	3410583	3411485	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-tetrahydrodipicolinate synthase	3410583..3411485	Alicycliphilus denitrificans BC	
ALIDE_RS16275	CDS	ALIDE_RS16275	NC_014910.1	3411472	3411732	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MoaD/ThiS family protein	complement(3411472..3411732)	Alicycliphilus denitrificans BC	
ALIDE_RS16280	CDS	glp	NC_014910.1	3411729	3412976	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; gephyrin-like molybdotransferase Glp	complement(3411729..3412976)	Alicycliphilus denitrificans BC	
ALIDE_RS16285	CDS	mobB	NC_014910.1	3412973	3413545	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-guanine dinucleotide biosynthesis protein B	complement(3412973..3413545)	Alicycliphilus denitrificans BC	
ALIDE_RS16290	CDS	thrC	NC_014910.1	3413598	3415028	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine synthase	complement(3413598..3415028)	Alicycliphilus denitrificans BC	
ALIDE_RS16295	CDS	ALIDE_RS16295	NC_014910.1	3415039	3415467	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system VapC family toxin	complement(3415039..3415467)	Alicycliphilus denitrificans BC	
ALIDE_RS16300	CDS	ALIDE_RS16300	NC_014910.1	3415473	3415736	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system Phd/YefM family antitoxin	complement(3415473..3415736)	Alicycliphilus denitrificans BC	
ALIDE_RS16305	CDS	ALIDE_RS16305	NC_014910.1	3415780	3417114	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; homoserine dehydrogenase	complement(3415780..3417114)	Alicycliphilus denitrificans BC	
ALIDE_RS16310	CDS	ALIDE_RS16310	NC_014910.1	3417186	3418418	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxal phosphate-dependent aminotransferase	complement(3417186..3418418)	Alicycliphilus denitrificans BC	
ALIDE_RS16315	CDS	ALIDE_RS16315	NC_014910.1	3418537	3418908	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Mth938-like domain-containing protein	3418537..3418908	Alicycliphilus denitrificans BC	
ALIDE_RS16330	CDS	ALIDE_RS16330	NC_014910.1	3419665	3420621	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3419665..3420621)	Alicycliphilus denitrificans BC	
ALIDE_RS16335	CDS	ALIDE_RS16335	NC_014910.1	3420836	3421984	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	3420836..3421984	Alicycliphilus denitrificans BC	
ALIDE_RS16340	CDS	ALIDE_RS16340	NC_014910.1	3421993	3423108	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	3421993..3423108	Alicycliphilus denitrificans BC	
ALIDE_RS16345	CDS	ALIDE_RS16345	NC_014910.1	3423416	3424348	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding protein	complement(3423416..3424348)	Alicycliphilus denitrificans BC	
ALIDE_RS16350	CDS	ALIDE_RS16350	NC_014910.1	3424363	3425112	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit beta/FixA family protein	complement(3424363..3425112)	Alicycliphilus denitrificans BC	
ALIDE_RS16355	CDS	ALIDE_RS16355	NC_014910.1	3425159	3426136	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3425159..3426136)	Alicycliphilus denitrificans BC	
ALIDE_RS16360	CDS	ALIDE_RS16360	NC_014910.1	3426153	3427337	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA C-acyltransferase	complement(3426153..3427337)	Alicycliphilus denitrificans BC	
ALIDE_RS16365	CDS	ALIDE_RS16365	NC_014910.1	3427352	3427747	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; OB-fold domain-containing protein	complement(3427352..3427747)	Alicycliphilus denitrificans BC	
ALIDE_RS16370	CDS	ALIDE_RS16370	NC_014910.1	3427755	3428885	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiolase family protein	complement(3427755..3428885)	Alicycliphilus denitrificans BC	
ALIDE_RS16375	CDS	ALIDE_RS16375	NC_014910.1	3428888	3429664	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase-related protein	complement(3428888..3429664)	Alicycliphilus denitrificans BC	
ALIDE_RS16380	CDS	ALIDE_RS16380	NC_014910.1	3429681	3430847	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3429681..3430847)	Alicycliphilus denitrificans BC	
ALIDE_RS16385	CDS	ALIDE_RS16385	NC_014910.1	3431018	3433171	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate--CoA ligase family protein	3431018..3433171	Alicycliphilus denitrificans BC	
ALIDE_RS16390	CDS	ALIDE_RS16390	NC_014910.1	3433168	3433572	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; OB-fold domain-containing protein	3433168..3433572	Alicycliphilus denitrificans BC	
ALIDE_RS16395	CDS	ALIDE_RS16395	NC_014910.1	3433569	3434726	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiolase	3433569..3434726	Alicycliphilus denitrificans BC	
ALIDE_RS16400	CDS	ALIDE_RS16400	NC_014910.1	3434779	3435552	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase-related protein	complement(3434779..3435552)	Alicycliphilus denitrificans BC	
ALIDE_RS16405	CDS	ALIDE_RS16405	NC_014910.1	3435642	3437750	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein	3435642..3437750	Alicycliphilus denitrificans BC	
ALIDE_RS23550	CDS	ALIDE_RS23550	NC_014910.1	3438009	3438739	D	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	3438009..3438739	Alicycliphilus denitrificans BC	
ALIDE_RS16415	CDS	ALIDE_RS16415	NC_014910.1	3438822	3439679	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	complement(3438822..3439679)	Alicycliphilus denitrificans BC	
ALIDE_RS16420	CDS	ALIDE_RS16420	NC_014910.1	3439717	3440862	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3439717..3440862)	Alicycliphilus denitrificans BC	
ALIDE_RS16425	CDS	ALIDE_RS16425	NC_014910.1	3440871	3442037	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3440871..3442037)	Alicycliphilus denitrificans BC	
ALIDE_RS16430	CDS	ALIDE_RS16430	NC_014910.1	3442046	3442855	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase-related protein	complement(3442046..3442855)	Alicycliphilus denitrificans BC	
ALIDE_RS16435	CDS	ALIDE_RS16435	NC_014910.1	3442928	3443497	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nuclear transport factor 2 family protein	3442928..3443497	Alicycliphilus denitrificans BC	
ALIDE_RS16440	CDS	ALIDE_RS16440	NC_014910.1	3443599	3444594	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3443599..3444594	Alicycliphilus denitrificans BC	
ALIDE_RS16445	CDS	ALIDE_RS16445	NC_014910.1	3444600	3445409	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxybutyrate dehydrogenase	3444600..3445409	Alicycliphilus denitrificans BC	
ALIDE_RS16450	CDS	ALIDE_RS16450	NC_014910.1	3445441	3446685	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	3445441..3446685	Alicycliphilus denitrificans BC	
ALIDE_RS16455	CDS	ALIDE_RS16455	NC_014910.1	3446719	3447480	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose 1-dehydrogenase	3446719..3447480	Alicycliphilus denitrificans BC	
ALIDE_RS16460	CDS	ALIDE_RS16460	NC_014910.1	3447511	3448263	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	complement(3447511..3448263)	Alicycliphilus denitrificans BC	
ALIDE_RS16465	CDS	ALIDE_RS16465	NC_014910.1	3448275	3449462	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(3448275..3449462)	Alicycliphilus denitrificans BC	
ALIDE_RS16470	CDS	ALIDE_RS16470	NC_014910.1	3449693	3450658	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3449693..3450658	Alicycliphilus denitrificans BC	
ALIDE_RS16475	CDS	ALIDE_RS16475	NC_014910.1	3450731	3451801	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:flavin oxidoreductase/NADH oxidase	3450731..3451801	Alicycliphilus denitrificans BC	
ALIDE_RS16480	CDS	ALIDE_RS16480	NC_014910.1	3451862	3452557	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	3451862..3452557	Alicycliphilus denitrificans BC	
ALIDE_RS16485	CDS	ALIDE_RS16485	NC_014910.1	3452554	3453066	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methylated-DNA--[protein]-cysteine S-methyltransferase	complement(3452554..3453066)	Alicycliphilus denitrificans BC	
ALIDE_RS16490	CDS	cobO	NC_014910.1	3453173	3453742	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cob(I)yrinic acid a,c-diamide adenosyltransferase	complement(3453173..3453742)	Alicycliphilus denitrificans BC	
ALIDE_RS16495	CDS	ALIDE_RS16495	NC_014910.1	3453766	3454542	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(3453766..3454542)	Alicycliphilus denitrificans BC	
ALIDE_RS16500	CDS	ALIDE_RS16500	NC_014910.1	3454539	3455582	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter permease	complement(3454539..3455582)	Alicycliphilus denitrificans BC	
ALIDE_RS16505	CDS	ALIDE_RS16505	NC_014910.1	3455579	3456478	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helical backbone metal receptor	complement(3455579..3456478)	Alicycliphilus denitrificans BC	
ALIDE_RS16510	CDS	ALIDE_RS16510	NC_014910.1	3456475	3457059	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	complement(3456475..3457059)	Alicycliphilus denitrificans BC	
ALIDE_RS16515	CDS	ALIDE_RS16515	NC_014910.1	3457121	3458473	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cobyrinate a,c-diamide synthase	complement(3457121..3458473)	Alicycliphilus denitrificans BC	
ALIDE_RS16520	CDS	ALIDE_RS16520	NC_014910.1	3458475	3460268	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor	complement(3458475..3460268)	Alicycliphilus denitrificans BC	
ALIDE_RS16525	CDS	ALIDE_RS16525	NC_014910.1	3460696	3460935	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3460696..3460935	Alicycliphilus denitrificans BC	
ALIDE_RS16530	CDS	ALIDE_RS16530	NC_014910.1	3460932	3461288	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZapA	3460932..3461288	Alicycliphilus denitrificans BC	
ALIDE_RS16535	CDS	ALIDE_RS16535	NC_014910.1	3461544	3464024	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional diguanylate cyclase/phosphodiesterase	complement(3461544..3464024)	Alicycliphilus denitrificans BC	
ALIDE_RS16540	CDS	ALIDE_RS16540	NC_014910.1	3464021	3465313	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HD-GYP domain-containing protein	complement(3464021..3465313)	Alicycliphilus denitrificans BC	
ALIDE_RS16545	CDS	ALIDE_RS16545	NC_014910.1	3465429	3466151	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite exporter TauE/SafE family protein	complement(3465429..3466151)	Alicycliphilus denitrificans BC	
ALIDE_RS16550	CDS	hemN	NC_014910.1	3466155	3467537	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; oxygen-independent coproporphyrinogen III oxidase	complement(3466155..3467537)	Alicycliphilus denitrificans BC	
ALIDE_RS16555	CDS	fnr	NC_014910.1	3467708	3468451	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate/nitrate reduction transcriptional regulator Fnr	3467708..3468451	Alicycliphilus denitrificans BC	
ALIDE_RS16560	CDS	ALIDE_RS16560	NC_014910.1	3468486	3468773	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3468486..3468773)	Alicycliphilus denitrificans BC	
ALIDE_RS16565	CDS	ALIDE_RS16565	NC_014910.1	3468861	3469139	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FixH family protein	complement(3468861..3469139)	Alicycliphilus denitrificans BC	
ALIDE_RS16570	CDS	ccoG	NC_014910.1	3469199	3470641	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c oxidase accessory protein CcoG	complement(3469199..3470641)	Alicycliphilus denitrificans BC	
ALIDE_RS16575	CDS	ccoP	NC_014910.1	3470726	3471646	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome-c oxidase, cbb3-type subunit III	complement(3470726..3471646)	Alicycliphilus denitrificans BC	
ALIDE_RS16580	CDS	ALIDE_RS16580	NC_014910.1	3471676	3471813	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cbb3-type cytochrome c oxidase subunit 3	complement(3471676..3471813)	Alicycliphilus denitrificans BC	
ALIDE_RS16585	CDS	ccoO	NC_014910.1	3471834	3472466	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome-c oxidase, cbb3-type subunit II	complement(3471834..3472466)	Alicycliphilus denitrificans BC	
ALIDE_RS16590	CDS	ccoN	NC_014910.1	3472486	3473925	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome-c oxidase, cbb3-type subunit I	complement(3472486..3473925)	Alicycliphilus denitrificans BC	
ALIDE_RS16595	CDS	ccoS	NC_014910.1	3473992	3474129	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cbb3-type cytochrome oxidase assembly protein CcoS	complement(3473992..3474129)	Alicycliphilus denitrificans BC	
ALIDE_RS16600	CDS	ALIDE_RS16600	NC_014910.1	3474132	3476468	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation-translocating P-type ATPase	complement(3474132..3476468)	Alicycliphilus denitrificans BC	
ALIDE_RS16605	CDS	ALIDE_RS16605	NC_014910.1	3476631	3477074	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein	3476631..3477074	Alicycliphilus denitrificans BC	
ALIDE_RS16610	CDS	ALIDE_RS16610	NC_014910.1	3477184	3478737	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; malonyl-CoA synthase	complement(3477184..3478737)	Alicycliphilus denitrificans BC	
ALIDE_RS16615	CDS	ALIDE_RS16615	NC_014910.1	3478748	3479569	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase/isomerase family protein	complement(3478748..3479569)	Alicycliphilus denitrificans BC	
ALIDE_RS16620	CDS	ALIDE_RS16620	NC_014910.1	3479579	3480601	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3479579..3480601)	Alicycliphilus denitrificans BC	
ALIDE_RS16625	CDS	ALIDE_RS16625	NC_014910.1	3480665	3482092	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; malonyl-CoA decarboxylase	complement(3480665..3482092)	Alicycliphilus denitrificans BC	
ALIDE_RS16630	CDS	ALIDE_RS16630	NC_014910.1	3482089	3482757	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	complement(3482089..3482757)	Alicycliphilus denitrificans BC	
ALIDE_RS16635	CDS	lgt	NC_014910.1	3482966	3483781	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; prolipoprotein diacylglyceryl transferase	complement(3482966..3483781)	Alicycliphilus denitrificans BC	
ALIDE_RS16640	CDS	bfr	NC_014910.1	3483881	3484348	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bacterioferritin	3483881..3484348	Alicycliphilus denitrificans BC	
ALIDE_RS16645	CDS	ALIDE_RS16645	NC_014910.1	3484351	3484779	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PaaI family thioesterase	complement(3484351..3484779)	Alicycliphilus denitrificans BC	
ALIDE_RS16650	CDS	ilvD	NC_014910.1	3484920	3486776	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxy-acid dehydratase	complement(3484920..3486776)	Alicycliphilus denitrificans BC	
ALIDE_RS16655	CDS	ilvD	NC_014910.1	3487005	3488696	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxy-acid dehydratase	3487005..3488696	Alicycliphilus denitrificans BC	
ALIDE_RS16660	CDS	ALIDE_RS16660	NC_014910.1	3488721	3488963	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR04438 family Trp-rich protein	complement(3488721..3488963)	Alicycliphilus denitrificans BC	
ALIDE_RS16665	CDS	ALIDE_RS16665	NC_014910.1	3489071	3489373	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome	3489071..3489373	Alicycliphilus denitrificans BC	
ALIDE_RS16670	CDS	lolD	NC_014910.1	3489502	3490188	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein-releasing ABC transporter ATP-binding protein LolD	complement(3489502..3490188)	Alicycliphilus denitrificans BC	
ALIDE_RS16675	CDS	ALIDE_RS16675	NC_014910.1	3490181	3491434	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein-releasing ABC transporter permease subunit	complement(3490181..3491434)	Alicycliphilus denitrificans BC	
ALIDE_RS16680	CDS	ALIDE_RS16680	NC_014910.1	3491529	3492479	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate mutase	3491529..3492479	Alicycliphilus denitrificans BC	
ALIDE_RS16685	CDS	recJ	NC_014910.1	3492476	3494191	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded-DNA-specific exonuclease RecJ	3492476..3494191	Alicycliphilus denitrificans BC	
ALIDE_RS16690	CDS	ALIDE_RS16690	NC_014910.1	3494252	3496027	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	complement(3494252..3496027)	Alicycliphilus denitrificans BC	
ALIDE_RS16695	CDS	ALIDE_RS16695	NC_014910.1	3496198	3497079	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3',5'-nucleoside bisphosphate phosphatase	3496198..3497079	Alicycliphilus denitrificans BC	
ALIDE_RS16700	CDS	ALIDE_RS16700	NC_014910.1	3497085	3497720	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; L-threonylcarbamoyladenylate synthase	3497085..3497720	Alicycliphilus denitrificans BC	
ALIDE_RS16705	CDS	ALIDE_RS16705	NC_014910.1	3497805	3498980	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	complement(3497805..3498980)	Alicycliphilus denitrificans BC	
ALIDE_RS16710	CDS	ALIDE_RS16710	NC_014910.1	3499361	3500029	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-2 protease family protein	3499361..3500029	Alicycliphilus denitrificans BC	
ALIDE_RS16715	CDS	ALIDE_RS16715	NC_014910.1	3500041	3501342	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan--tRNA ligase	3500041..3501342	Alicycliphilus denitrificans BC	
ALIDE_RS16720	CDS	ALIDE_RS16720	NC_014910.1	3501545	3502276	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	3501545..3502276	Alicycliphilus denitrificans BC	
ALIDE_RS16725	CDS	ALIDE_RS16725	NC_014910.1	3502400	3504052	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FecR domain-containing protein	3502400..3504052	Alicycliphilus denitrificans BC	
ALIDE_RS16730	CDS	ALIDE_RS16730	NC_014910.1	3504093	3506399	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CHASE2 domain-containing protein	3504093..3506399	Alicycliphilus denitrificans BC	
ALIDE_RS16735	CDS	ALIDE_RS16735	NC_014910.1	3506436	3507830	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03013 family XrtA/PEP-CTERM system glycosyltransferase	complement(3506436..3507830)	Alicycliphilus denitrificans BC	
ALIDE_RS16740	CDS	ALIDE_RS16740	NC_014910.1	3508013	3509923	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3508013..3509923)	Alicycliphilus denitrificans BC	
ALIDE_RS16750	CDS	ALIDE_RS16750	NC_014910.1	3510218	3511159	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bestrophin family ion channel	complement(3510218..3511159)	Alicycliphilus denitrificans BC	
ALIDE_RS16755	CDS	serS	NC_014910.1	3511216	3512532	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; serine--tRNA ligase	complement(3511216..3512532)	Alicycliphilus denitrificans BC	
ALIDE_RS16760	CDS	ALIDE_RS16760	NC_014910.1	3512585	3513262	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CBS domain-containing protein	3512585..3513262	Alicycliphilus denitrificans BC	
ALIDE_RS16765	CDS	ALIDE_RS16765	NC_014910.1	3513284	3514612	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hemolysin family protein	complement(3513284..3514612)	Alicycliphilus denitrificans BC	
ALIDE_RS16770	CDS	ispH	NC_014910.1	3514820	3515776	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	complement(3514820..3515776)	Alicycliphilus denitrificans BC	
ALIDE_RS16775	CDS	ALIDE_RS16775	NC_014910.1	3515781	3516257	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FKBP-type peptidyl-prolyl cis-trans isomerase	complement(3515781..3516257)	Alicycliphilus denitrificans BC	
ALIDE_RS16780	CDS	radC	NC_014910.1	3516339	3517052	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RadC	3516339..3517052	Alicycliphilus denitrificans BC	
ALIDE_RS16785	CDS	ALIDE_RS16785	NC_014910.1	3517049	3518209	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase-like activity of phytase family protein	3517049..3518209	Alicycliphilus denitrificans BC	
ALIDE_RS16790	CDS	ALIDE_RS16790	NC_014910.1	3518206	3518856	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Smr/MutS family protein	3518206..3518856	Alicycliphilus denitrificans BC	
ALIDE_RS16795	CDS	ALIDE_RS16795	NC_014910.1	3518954	3519922	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3518954..3519922	Alicycliphilus denitrificans BC	
ALIDE_RS16800	CDS	ALIDE_RS16800	NC_014910.1	3519919	3521199	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase large subunit	3519919..3521199	Alicycliphilus denitrificans BC	
ALIDE_RS16805	CDS	ALIDE_RS16805	NC_014910.1	3521196	3521765	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase small subunit	3521196..3521765	Alicycliphilus denitrificans BC	
ALIDE_RS16810	CDS	ALIDE_RS16810	NC_014910.1	3521762	3522616	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase/PEP mutase family protein	3521762..3522616	Alicycliphilus denitrificans BC	
ALIDE_RS16815	CDS	ALIDE_RS16815	NC_014910.1	3522710	3523468	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	3522710..3523468	Alicycliphilus denitrificans BC	
ALIDE_RS16820	CDS	ALIDE_RS16820	NC_014910.1	3523518	3523916	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; group II truncated hemoglobin	complement(3523518..3523916)	Alicycliphilus denitrificans BC	
ALIDE_RS16825	CDS	ALIDE_RS16825	NC_014910.1	3523955	3524347	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TraR/DksA family transcriptional regulator	complement(3523955..3524347)	Alicycliphilus denitrificans BC	
ALIDE_RS16830	CDS	ALIDE_RS16830	NC_014910.1	3524391	3525947	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aminoglycoside phosphotransferase/ATP-binding protein	complement(3524391..3525947)	Alicycliphilus denitrificans BC	
ALIDE_RS16835	CDS	ALIDE_RS16835	NC_014910.1	3526001	3526228	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3526001..3526228)	Alicycliphilus denitrificans BC	
ALIDE_RS16840	CDS	ALIDE_RS16840	NC_014910.1	3526231	3528762	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FtsX-like permease family protein	complement(3526231..3528762)	Alicycliphilus denitrificans BC	
ALIDE_RS16845	CDS	ALIDE_RS16845	NC_014910.1	3528772	3529638	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase accessory sulfurtransferase FdhD	complement(3528772..3529638)	Alicycliphilus denitrificans BC	
ALIDE_RS16850	CDS	ALIDE_RS16850	NC_014910.1	3529718	3530038	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3529718..3530038)	Alicycliphilus denitrificans BC	
ALIDE_RS16855	CDS	ALIDE_RS16855	NC_014910.1	3530035	3531231	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase subunit gamma	complement(3530035..3531231)	Alicycliphilus denitrificans BC	
ALIDE_RS16860	CDS	ALIDE_RS16860	NC_014910.1	3531245	3531478	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3531245..3531478)	Alicycliphilus denitrificans BC	
ALIDE_RS16865	CDS	fdh3B	NC_014910.1	3531475	3532095	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase FDH3 subunit beta	complement(3531475..3532095)	Alicycliphilus denitrificans BC	
ALIDE_RS16870	CDS	ALIDE_RS16870	NC_014910.1	3532123	3535095	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase subunit alpha	complement(3532123..3535095)	Alicycliphilus denitrificans BC	
ALIDE_RS16875	CDS	ALIDE_RS16875	NC_014910.1	3535117	3535329	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase	complement(3535117..3535329)	Alicycliphilus denitrificans BC	
ALIDE_RS16880	CDS	ALIDE_RS16880	NC_014910.1	3535465	3536100	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone TorD family protein	complement(3535465..3536100)	Alicycliphilus denitrificans BC	
ALIDE_RS16885	CDS	ALIDE_RS16885	NC_014910.1	3536097	3538160	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4Fe-4S dicluster domain-containing protein	complement(3536097..3538160)	Alicycliphilus denitrificans BC	
ALIDE_RS16890	CDS	ALIDE_RS16890	NC_014910.1	3538120	3538728	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3306 domain-containing protein	complement(3538120..3538728)	Alicycliphilus denitrificans BC	
ALIDE_RS16895	CDS	ALIDE_RS16895	NC_014910.1	3538721	3539284	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3305 domain-containing protein	complement(3538721..3539284)	Alicycliphilus denitrificans BC	
ALIDE_RS16900	CDS	fdhF	NC_014910.1	3539295	3542156	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase subunit alpha	complement(3539295..3542156)	Alicycliphilus denitrificans BC	
ALIDE_RS16905	CDS	ALIDE_RS16905	NC_014910.1	3542153	3544054	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-dependent oxidoreductase subunit E	complement(3542153..3544054)	Alicycliphilus denitrificans BC	
ALIDE_RS16910	CDS	ALIDE_RS16910	NC_014910.1	3544168	3544974	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA ester lyase	complement(3544168..3544974)	Alicycliphilus denitrificans BC	
ALIDE_RS16915	CDS	ALIDE_RS16915	NC_014910.1	3545005	3546207	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(3545005..3546207)	Alicycliphilus denitrificans BC	
ALIDE_RS16920	CDS	ALIDE_RS16920	NC_014910.1	3546204	3547019	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	complement(3546204..3547019)	Alicycliphilus denitrificans BC	
ALIDE_RS16925	CDS	ALIDE_RS16925	NC_014910.1	3547016	3548245	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(3547016..3548245)	Alicycliphilus denitrificans BC	
ALIDE_RS16930	CDS	ALIDE_RS16930	NC_014910.1	3548242	3549414	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3548242..3549414)	Alicycliphilus denitrificans BC	
ALIDE_RS16935	CDS	ALIDE_RS16935	NC_014910.1	3549411	3550862	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	complement(3549411..3550862)	Alicycliphilus denitrificans BC	
ALIDE_RS16940	CDS	ALIDE_RS16940	NC_014910.1	3550870	3551850	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3550870..3551850)	Alicycliphilus denitrificans BC	
ALIDE_RS16945	CDS	ALIDE_RS16945	NC_014910.1	3551900	3552403	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase	complement(3551900..3552403)	Alicycliphilus denitrificans BC	
ALIDE_RS16950	CDS	apbC	NC_014910.1	3552589	3553680	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster carrier protein ApbC	complement(3552589..3553680)	Alicycliphilus denitrificans BC	
ALIDE_RS16955	CDS	ALIDE_RS16955	NC_014910.1	3553747	3554820	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance/C4-dicarboxylate transporter family protein	complement(3553747..3554820)	Alicycliphilus denitrificans BC	
ALIDE_RS16960	CDS	selD	NC_014910.1	3554817	3555878	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; selenide, water dikinase SelD	complement(3554817..3555878)	Alicycliphilus denitrificans BC	
ALIDE_RS16965	CDS	mnmH	NC_014910.1	3555937	3556986	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA 2-selenouridine(34) synthase MnmH	3555937..3556986	Alicycliphilus denitrificans BC	
ALIDE_RS16970	CDS	ALIDE_RS16970	NC_014910.1	3557173	3557748	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; restriction endonuclease	3557173..3557748	Alicycliphilus denitrificans BC	
ALIDE_RS16975	CDS	ALIDE_RS16975	NC_014910.1	3557773	3559014	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; patatin-like phospholipase family protein	3557773..3559014	Alicycliphilus denitrificans BC	
ALIDE_RS16980	CDS	metG	NC_014910.1	3559094	3561163	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine--tRNA ligase	3559094..3561163	Alicycliphilus denitrificans BC	
ALIDE_RS16985	CDS	ALIDE_RS16985	NC_014910.1	3561180	3561407	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3561180..3561407	Alicycliphilus denitrificans BC	
ALIDE_RS16990	CDS	ALIDE_RS16990	NC_014910.1	3561581	3563053	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PLP-dependent aminotransferase family protein	complement(3561581..3563053)	Alicycliphilus denitrificans BC	
ALIDE_RS16995	CDS	ALIDE_RS16995	NC_014910.1	3563143	3564360	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; benzoate/H(+) symporter BenE family transporter	3563143..3564360	Alicycliphilus denitrificans BC	
ALIDE_RS17000	CDS	ALIDE_RS17000	NC_014910.1	3564357	3565151	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YggS family pyridoxal phosphate-dependent enzyme	3564357..3565151	Alicycliphilus denitrificans BC	
ALIDE_RS17005	CDS	ALIDE_RS17005	NC_014910.1	3565148	3565864	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine amidotransferase	3565148..3565864	Alicycliphilus denitrificans BC	
ALIDE_RS17010	CDS	ALIDE_RS17010	NC_014910.1	3565950	3566957	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator	complement(3565950..3566957)	Alicycliphilus denitrificans BC	
ALIDE_RS17015	CDS	ALIDE_RS17015	NC_014910.1	3567052	3568662	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase	3567052..3568662	Alicycliphilus denitrificans BC	
ALIDE_RS17020	CDS	ALIDE_RS17020	NC_014910.1	3568659	3569810	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate dehydrogenase	3568659..3569810	Alicycliphilus denitrificans BC	
ALIDE_RS17025	CDS	ALIDE_RS17025	NC_014910.1	3569879	3571531	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase large subunit	3569879..3571531	Alicycliphilus denitrificans BC	
ALIDE_RS17030	CDS	ALIDE_RS17030	NC_014910.1	3571538	3572038	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3571538..3572038)	Alicycliphilus denitrificans BC	
ALIDE_RS17035	CDS	ALIDE_RS17035	NC_014910.1	3572084	3572299	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3460 family protein	3572084..3572299	Alicycliphilus denitrificans BC	
ALIDE_RS17040	CDS	ALIDE_RS17040	NC_014910.1	3572365	3573201	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ScpA family protein	3572365..3573201	Alicycliphilus denitrificans BC	
ALIDE_RS17045	CDS	ALIDE_RS17045	NC_014910.1	3573186	3573740	R	This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxidase-related enzyme	complement(3573186..3573740)	Alicycliphilus denitrificans BC	
ALIDE_RS17050	CDS	ALIDE_RS17050	NC_014910.1	3573836	3574705	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator	3573836..3574705	Alicycliphilus denitrificans BC	
ALIDE_RS17055	CDS	nadB	NC_014910.1	3574797	3576371	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; L-aspartate oxidase	3574797..3576371	Alicycliphilus denitrificans BC	
ALIDE_RS17060	CDS	ALIDE_RS17060	NC_014910.1	3576419	3576781	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-carboxymethyl-2-hydroxymuconate Delta-isomerase	3576419..3576781	Alicycliphilus denitrificans BC	
ALIDE_RS17065	CDS	pabB	NC_014910.1	3576919	3578661	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminodeoxychorismate synthase component I	complement(3576919..3578661)	Alicycliphilus denitrificans BC	
ALIDE_RS17070	CDS	nadA	NC_014910.1	3578715	3579839	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; quinolinate synthase NadA	complement(3578715..3579839)	Alicycliphilus denitrificans BC	
ALIDE_RS17075	CDS	nadC	NC_014910.1	3580061	3580942	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxylating nicotinate-nucleotide diphosphorylase	complement(3580061..3580942)	Alicycliphilus denitrificans BC	
ALIDE_RS17080	CDS	panB	NC_014910.1	3581261	3582145	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-methyl-2-oxobutanoate hydroxymethyltransferase	3581261..3582145	Alicycliphilus denitrificans BC	
ALIDE_RS17085	CDS	panC	NC_014910.1	3582157	3583008	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pantoate--beta-alanine ligase	3582157..3583008	Alicycliphilus denitrificans BC	
ALIDE_RS17090	CDS	ALIDE_RS17090	NC_014910.1	3583128	3584018	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(3583128..3584018)	Alicycliphilus denitrificans BC	
ALIDE_RS17095	CDS	ALIDE_RS17095	NC_014910.1	3584129	3585127	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3584129..3585127	Alicycliphilus denitrificans BC	
ALIDE_RS17100	CDS	ALIDE_RS17100	NC_014910.1	3585136	3586662	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; M81 family metallopeptidase	3585136..3586662	Alicycliphilus denitrificans BC	
ALIDE_RS17105	CDS	ALIDE_RS17105	NC_014910.1	3586677	3587414	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite exporter TauE/SafE family protein	3586677..3587414	Alicycliphilus denitrificans BC	
ALIDE_RS17110	CDS	ALIDE_RS17110	NC_014910.1	3587446	3588429	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	3587446..3588429	Alicycliphilus denitrificans BC	
ALIDE_RS17115	CDS	ALIDE_RS17115	NC_014910.1	3588457	3589179	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3588457..3589179)	Alicycliphilus denitrificans BC	
ALIDE_RS17120	CDS	ALIDE_RS17120	NC_014910.1	3589297	3590289	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	complement(3589297..3590289)	Alicycliphilus denitrificans BC	
ALIDE_RS17125	CDS	secB	NC_014910.1	3590355	3590810	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-export chaperone SecB	complement(3590355..3590810)	Alicycliphilus denitrificans BC	
ALIDE_RS17130	CDS	grxC	NC_014910.1	3590918	3591175	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin 3	complement(3590918..3591175)	Alicycliphilus denitrificans BC	
ALIDE_RS17135	CDS	ALIDE_RS17135	NC_014910.1	3591224	3591631	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; rhodanese-like domain-containing protein	complement(3591224..3591631)	Alicycliphilus denitrificans BC	
ALIDE_RS17140	CDS	gpmA	NC_014910.1	3591705	3592448	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	3591705..3592448	Alicycliphilus denitrificans BC	
ALIDE_RS17145	CDS	ALIDE_RS17145	NC_014910.1	3592535	3593971	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; S41 family peptidase	3592535..3593971	Alicycliphilus denitrificans BC	
ALIDE_RS17150	CDS	moeB	NC_014910.1	3594039	3594803	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-synthase adenylyltransferase MoeB	3594039..3594803	Alicycliphilus denitrificans BC	
ALIDE_RS17155	CDS	ALIDE_RS17155	NC_014910.1	3594909	3595328	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	3594909..3595328	Alicycliphilus denitrificans BC	
ALIDE_RS17160	CDS	ALIDE_RS17160	NC_014910.1	3595306	3595938	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	complement(3595306..3595938)	Alicycliphilus denitrificans BC	
ALIDE_RS17165	CDS	ALIDE_RS17165	NC_014910.1	3596048	3597391	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CHASE3 domain-containing protein	3596048..3597391	Alicycliphilus denitrificans BC	
ALIDE_RS23555	CDS	ALIDE_RS23555	NC_014910.1	3597534	3597698	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1328 domain-containing protein	3597534..3597698	Alicycliphilus denitrificans BC	
ALIDE_RS17175	CDS	ALIDE_RS17175	NC_014910.1	3597764	3598156	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3597764..3598156	Alicycliphilus denitrificans BC	
ALIDE_RS17180	CDS	ALIDE_RS17180	NC_014910.1	3598295	3598609	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; BON domain-containing protein	3598295..3598609	Alicycliphilus denitrificans BC	
ALIDE_RS17185	CDS	coaD	NC_014910.1	3598765	3599253	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pantetheine-phosphate adenylyltransferase	complement(3598765..3599253)	Alicycliphilus denitrificans BC	
ALIDE_RS17190	CDS	rsmD	NC_014910.1	3599381	3599971	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	complement(3599381..3599971)	Alicycliphilus denitrificans BC	
ALIDE_RS17195	CDS	ALIDE_RS17195	NC_014910.1	3599968	3601326	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pitrilysin family protein	complement(3599968..3601326)	Alicycliphilus denitrificans BC	
ALIDE_RS17200	CDS	ALIDE_RS17200	NC_014910.1	3601340	3602770	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pitrilysin family protein	complement(3601340..3602770)	Alicycliphilus denitrificans BC	
ALIDE_RS17205	CDS	ftsY	NC_014910.1	3602800	3603924	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; signal recognition particle-docking protein FtsY	3602800..3603924	Alicycliphilus denitrificans BC	
ALIDE_RS17210	CDS	ALIDE_RS17210	NC_014910.1	3603938	3604891	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(3603938..3604891)	Alicycliphilus denitrificans BC	
ALIDE_RS17215	CDS	ALIDE_RS17215	NC_014910.1	3605010	3605948	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrodipicolinate synthase family protein	3605010..3605948	Alicycliphilus denitrificans BC	
ALIDE_RS17220	CDS	ALIDE_RS17220	NC_014910.1	3605980	3606945	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3605980..3606945	Alicycliphilus denitrificans BC	
ALIDE_RS17225	CDS	ALIDE_RS17225	NC_014910.1	3606935	3607639	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	3606935..3607639	Alicycliphilus denitrificans BC	
ALIDE_RS17230	CDS	ALIDE_RS17230	NC_014910.1	3607665	3608831	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; mandelate racemase/muconate lactonizing enzyme family protein	3607665..3608831	Alicycliphilus denitrificans BC	
ALIDE_RS17235	CDS	cutA	NC_014910.1	3608846	3609202	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; divalent-cation tolerance protein CutA	complement(3608846..3609202)	Alicycliphilus denitrificans BC	
ALIDE_RS17240	CDS	ALIDE_RS17240	NC_014910.1	3609317	3610306	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3609317..3610306)	Alicycliphilus denitrificans BC	
ALIDE_RS17245	CDS	ALIDE_RS17245	NC_014910.1	3610361	3611332	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3610361..3611332)	Alicycliphilus denitrificans BC	
ALIDE_RS17250	CDS	acnA	NC_014910.1	3611418	3614063	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aconitate hydratase AcnA	3611418..3614063	Alicycliphilus denitrificans BC	
ALIDE_RS17255	CDS	ALIDE_RS17255	NC_014910.1	3614074	3615015	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	3614074..3615015	Alicycliphilus denitrificans BC	
ALIDE_RS17260	CDS	ALIDE_RS17260	NC_014910.1	3615028	3615765	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	3615028..3615765	Alicycliphilus denitrificans BC	
ALIDE_RS17265	CDS	ALIDE_RS17265	NC_014910.1	3615762	3616844	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lactonase family protein	3615762..3616844	Alicycliphilus denitrificans BC	
ALIDE_RS17270	CDS	ALIDE_RS17270	NC_014910.1	3616847	3617914	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-hydroxyhexanoate dehydrogenase	complement(3616847..3617914)	Alicycliphilus denitrificans BC	
ALIDE_RS17275	CDS	ALIDE_RS17275	NC_014910.1	3618081	3618767	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hydratase	complement(3618081..3618767)	Alicycliphilus denitrificans BC	
ALIDE_RS17280	CDS	ALIDE_RS17280	NC_014910.1	3618915	3619166	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3618915..3619166)	Alicycliphilus denitrificans BC	
ALIDE_RS17285	CDS	ALIDE_RS17285	NC_014910.1	3619314	3619979	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	3619314..3619979	Alicycliphilus denitrificans BC	
ALIDE_RS17290	CDS	ALIDE_RS17290	NC_014910.1	3619983	3621380	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase dimerization/phospho-acceptor domain-containing protein	3619983..3621380	Alicycliphilus denitrificans BC	
ALIDE_RS17295	CDS	ALIDE_RS17295	NC_014910.1	3621383	3622078	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; VIT family protein	complement(3621383..3622078)	Alicycliphilus denitrificans BC	
ALIDE_RS17300	CDS	ALIDE_RS17300	NC_014910.1	3622104	3622661	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome b	complement(3622104..3622661)	Alicycliphilus denitrificans BC	
ALIDE_RS17305	CDS	ALIDE_RS17305	NC_014910.1	3623015	3624064	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	3623015..3624064	Alicycliphilus denitrificans BC	
ALIDE_RS17310	CDS	ALIDE_RS17310	NC_014910.1	3624075	3627167	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CusA/CzcA family heavy metal efflux RND transporter	3624075..3627167	Alicycliphilus denitrificans BC	
ALIDE_RS17315	CDS	ALIDE_RS17315	NC_014910.1	3627164	3627505	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3240 family protein	3627164..3627505	Alicycliphilus denitrificans BC	
ALIDE_RS17320	CDS	ALIDE_RS17320	NC_014910.1	3627502	3628764	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TolC family protein	3627502..3628764	Alicycliphilus denitrificans BC	
ALIDE_RS24475	CDS	ALIDE_RS24475	NC_014910.1	3629018	3629515	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3629018..3629515)	Alicycliphilus denitrificans BC	
ALIDE_RS17330	CDS	rpoH	NC_014910.1	3630179	3631114	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor RpoH	3630179..3631114	Alicycliphilus denitrificans BC	
ALIDE_RS17335	CDS	ALIDE_RS17335	NC_014910.1	3631257	3632267	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3631257..3632267	Alicycliphilus denitrificans BC	
ALIDE_RS17340	CDS	ALIDE_RS17340	NC_014910.1	3632301	3632864	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SCO family protein	complement(3632301..3632864)	Alicycliphilus denitrificans BC	
ALIDE_RS17345	CDS	cyoE	NC_014910.1	3632922	3633848	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; heme o synthase	complement(3632922..3633848)	Alicycliphilus denitrificans BC	
ALIDE_RS17350	CDS	ALIDE_RS17350	NC_014910.1	3633845	3635002	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; COX15/CtaA family protein	complement(3633845..3635002)	Alicycliphilus denitrificans BC	
ALIDE_RS17355	CDS	ALIDE_RS17355	NC_014910.1	3634999	3635754	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3634999..3635754)	Alicycliphilus denitrificans BC	
ALIDE_RS17360	CDS	ALIDE_RS17360	NC_014910.1	3635696	3636463	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SURF1 family protein	complement(3635696..3636463)	Alicycliphilus denitrificans BC	
ALIDE_RS17365	CDS	ALIDE_RS17365	NC_014910.1	3636479	3636703	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; twin transmembrane helix small protein	3636479..3636703	Alicycliphilus denitrificans BC	
ALIDE_RS17370	CDS	ALIDE_RS17370	NC_014910.1	3636777	3637661	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c oxidase subunit 3	complement(3636777..3637661)	Alicycliphilus denitrificans BC	
ALIDE_RS17375	CDS	ALIDE_RS17375	NC_014910.1	3637721	3637933	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2970 domain-containing protein	complement(3637721..3637933)	Alicycliphilus denitrificans BC	
ALIDE_RS17380	CDS	ALIDE_RS17380	NC_014910.1	3637933	3638556	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c oxidase assembly protein	complement(3637933..3638556)	Alicycliphilus denitrificans BC	
ALIDE_RS24810	CDS	ALIDE_RS24810	NC_014910.1	3638572	3638688	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome oxidase small assembly protein	complement(3638572..3638688)	Alicycliphilus denitrificans BC	
ALIDE_RS17385	CDS	ctaD	NC_014910.1	3638706	3640337	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c oxidase subunit I	complement(3638706..3640337)	Alicycliphilus denitrificans BC	
ALIDE_RS17390	CDS	coxB	NC_014910.1	3640375	3641538	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c oxidase subunit II	complement(3640375..3641538)	Alicycliphilus denitrificans BC	
ALIDE_RS17395	CDS	ALIDE_RS17395	NC_014910.1	3641990	3642898	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3641990..3642898)	Alicycliphilus denitrificans BC	
ALIDE_RS17400	CDS	ALIDE_RS17400	NC_014910.1	3642934	3643671	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ComF family protein	3642934..3643671	Alicycliphilus denitrificans BC	
ALIDE_RS17405	CDS	ALIDE_RS17405	NC_014910.1	3643726	3644202	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (cytidine(34)-2'-O)-methyltransferase	3643726..3644202	Alicycliphilus denitrificans BC	
ALIDE_RS17410	CDS	ALIDE_RS17410	NC_014910.1	3644199	3645122	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(3644199..3645122)	Alicycliphilus denitrificans BC	
ALIDE_RS17415	CDS	ALIDE_RS17415	NC_014910.1	3645349	3645672	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4148 domain-containing protein	3645349..3645672	Alicycliphilus denitrificans BC	
ALIDE_RS17420	CDS	ALIDE_RS17420	NC_014910.1	3645752	3646372	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParA family protein	complement(3645752..3646372)	Alicycliphilus denitrificans BC	
ALIDE_RS17425	CDS	ALIDE_RS17425	NC_014910.1	3646452	3647090	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysE family transporter	complement(3646452..3647090)	Alicycliphilus denitrificans BC	
ALIDE_RS17430	CDS	kefC	NC_014910.1	3647209	3649059	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione-regulated potassium-efflux system protein KefC	3647209..3649059	Alicycliphilus denitrificans BC	
ALIDE_RS17435	CDS	ALIDE_RS17435	NC_014910.1	3649114	3649908	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	complement(3649114..3649908)	Alicycliphilus denitrificans BC	
ALIDE_RS17440	CDS	ALIDE_RS17440	NC_014910.1	3650072	3650935	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase/PEP mutase family protein	3650072..3650935	Alicycliphilus denitrificans BC	
ALIDE_RS17445	CDS	leuC	NC_014910.1	3650943	3652352	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase large subunit	3650943..3652352	Alicycliphilus denitrificans BC	
ALIDE_RS17450	CDS	leuD	NC_014910.1	3652355	3652987	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase small subunit	3652355..3652987	Alicycliphilus denitrificans BC	
ALIDE_RS17455	CDS	ALIDE_RS17455	NC_014910.1	3652992	3654011	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3652992..3654011	Alicycliphilus denitrificans BC	
ALIDE_RS17460	CDS	ALIDE_RS17460	NC_014910.1	3654023	3655201	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PrpF domain-containing protein	3654023..3655201	Alicycliphilus denitrificans BC	
ALIDE_RS17465	CDS	ALIDE_RS17465	NC_014910.1	3655206	3656639	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	3655206..3656639	Alicycliphilus denitrificans BC	
ALIDE_RS17470	CDS	ALIDE_RS17470	NC_014910.1	3656636	3657595	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	3656636..3657595	Alicycliphilus denitrificans BC	
ALIDE_RS17475	CDS	ALIDE_RS17475	NC_014910.1	3657622	3658617	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3657622..3658617	Alicycliphilus denitrificans BC	
ALIDE_RS17480	CDS	ALIDE_RS17480	NC_014910.1	3658731	3659918	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M20 aminoacylase family protein	complement(3658731..3659918)	Alicycliphilus denitrificans BC	
ALIDE_RS17485	CDS	ALIDE_RS17485	NC_014910.1	3659932	3660534	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	complement(3659932..3660534)	Alicycliphilus denitrificans BC	
ALIDE_RS17490	CDS	ALIDE_RS17490	NC_014910.1	3660606	3661430	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	3660606..3661430	Alicycliphilus denitrificans BC	
ALIDE_RS17495	CDS	ALIDE_RS17495	NC_014910.1	3661812	3662804	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3661812..3662804)	Alicycliphilus denitrificans BC	
ALIDE_RS17500	CDS	ALIDE_RS17500	NC_014910.1	3662849	3663574	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	complement(3662849..3663574)	Alicycliphilus denitrificans BC	
ALIDE_RS17505	CDS	pcaF	NC_014910.1	3663636	3664838	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoadipyl-CoA thiolase	complement(3663636..3664838)	Alicycliphilus denitrificans BC	
ALIDE_RS17510	CDS	ALIDE_RS17510	NC_014910.1	3664916	3665560	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacid CoA-transferase subunit B	complement(3664916..3665560)	Alicycliphilus denitrificans BC	
ALIDE_RS17515	CDS	ALIDE_RS17515	NC_014910.1	3665583	3666278	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacid CoA-transferase subunit A	complement(3665583..3666278)	Alicycliphilus denitrificans BC	
ALIDE_RS17520	CDS	ALIDE_RS17520	NC_014910.1	3666381	3667184	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator C-terminal domain-containing protein	3666381..3667184	Alicycliphilus denitrificans BC	
ALIDE_RS17525	CDS	ALIDE_RS17525	NC_014910.1	3667195	3667629	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1841 family protein	3667195..3667629	Alicycliphilus denitrificans BC	
ALIDE_RS17530	CDS	ALIDE_RS17530	NC_014910.1	3667564	3668445	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein	complement(3667564..3668445)	Alicycliphilus denitrificans BC	
ALIDE_RS17535	CDS	ALIDE_RS17535	NC_014910.1	3668892	3669551	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome	complement(3668892..3669551)	Alicycliphilus denitrificans BC	
ALIDE_RS17540	CDS	ALIDE_RS17540	NC_014910.1	3669672	3670514	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MoxR family ATPase	3669672..3670514	Alicycliphilus denitrificans BC	
ALIDE_RS17545	CDS	ALIDE_RS17545	NC_014910.1	3670526	3671125	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GNAT family protein	3670526..3671125	Alicycliphilus denitrificans BC	
ALIDE_RS17550	CDS	ALIDE_RS17550	NC_014910.1	3671141	3672154	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3671141..3672154)	Alicycliphilus denitrificans BC	
ALIDE_RS17555	CDS	ALIDE_RS17555	NC_014910.1	3672415	3673194	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	3672415..3673194	Alicycliphilus denitrificans BC	
ALIDE_RS17560	CDS	ALIDE_RS17560	NC_014910.1	3673202	3674398	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	3673202..3674398	Alicycliphilus denitrificans BC	
ALIDE_RS17565	CDS	ALIDE_RS17565	NC_014910.1	3674415	3675575	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	3674415..3675575	Alicycliphilus denitrificans BC	
ALIDE_RS17570	CDS	ALIDE_RS17570	NC_014910.1	3675588	3676370	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase-related protein	3675588..3676370	Alicycliphilus denitrificans BC	
ALIDE_RS17575	CDS	ALIDE_RS17575	NC_014910.1	3676367	3677704	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MmgE/PrpD family protein	3676367..3677704	Alicycliphilus denitrificans BC	
ALIDE_RS17580	CDS	ALIDE_RS17580	NC_014910.1	3677779	3678966	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VWA domain-containing protein	3677779..3678966	Alicycliphilus denitrificans BC	
ALIDE_RS17585	CDS	ALIDE_RS17585	NC_014910.1	3678971	3680866	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; BamA/TamA family outer membrane protein	3678971..3680866	Alicycliphilus denitrificans BC	
ALIDE_RS17590	CDS	ALIDE_RS17590	NC_014910.1	3680972	3685060	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; translocation/assembly module TamB domain-containing protein	3680972..3685060	Alicycliphilus denitrificans BC	
ALIDE_RS17595	CDS	ALIDE_RS17595	NC_014910.1	3685294	3686112	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3685294..3686112)	Alicycliphilus denitrificans BC	
ALIDE_RS17600	CDS	ALIDE_RS17600	NC_014910.1	3686532	3686756	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3686532..3686756)	Alicycliphilus denitrificans BC	
ALIDE_RS17605	CDS	ALIDE_RS17605	NC_014910.1	3686847	3687038	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	complement(3686847..3687038)	Alicycliphilus denitrificans BC	
ALIDE_RS24815	CDS	ALIDE_RS24815	NC_014910.1	3687035	3687436	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3687035..3687436)	Alicycliphilus denitrificans BC	
ALIDE_RS17615	CDS	ALIDE_RS17615	NC_014910.1	3687429	3687737	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3687429..3687737)	Alicycliphilus denitrificans BC	
ALIDE_RS24615	CDS	ALIDE_RS24615	NC_014910.1	3687857	3689104	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; glycoside hydrolase family 19 protein	complement(3687857..3689104)	Alicycliphilus denitrificans BC	
ALIDE_RS17625	CDS	ALIDE_RS17625	NC_014910.1	3689109	3689441	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3689109..3689441)	Alicycliphilus denitrificans BC	
ALIDE_RS17630	CDS	ALIDE_RS17630	NC_014910.1	3689490	3690398	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3689490..3690398)	Alicycliphilus denitrificans BC	
ALIDE_RS17635	CDS	ALIDE_RS17635	NC_014910.1	3690395	3691843	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3690395..3691843)	Alicycliphilus denitrificans BC	
ALIDE_RS17640	CDS	ALIDE_RS17640	NC_014910.1	3691853	3694324	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3691853..3694324)	Alicycliphilus denitrificans BC	
ALIDE_RS24195	CDS	ALIDE_RS24195	NC_014910.1	3694328	3694780	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3694328..3694780)	Alicycliphilus denitrificans BC	
ALIDE_RS17645	CDS	ALIDE_RS17645	NC_014910.1	3694972	3696600	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; carboxypeptidase-like regulatory domain-containing protein	complement(3694972..3696600)	Alicycliphilus denitrificans BC	
ALIDE_RS17650	CDS	ALIDE_RS17650	NC_014910.1	3696597	3699761	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3696597..3699761)	Alicycliphilus denitrificans BC	
ALIDE_RS17655	CDS	ALIDE_RS17655	NC_014910.1	3699776	3702571	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail tape measure protein	complement(3699776..3702571)	Alicycliphilus denitrificans BC	
ALIDE_RS17660	CDS	ALIDE_RS17660	NC_014910.1	3702647	3703438	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3702647..3703438)	Alicycliphilus denitrificans BC	
ALIDE_RS17665	CDS	ALIDE_RS17665	NC_014910.1	3703474	3703875	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3703474..3703875)	Alicycliphilus denitrificans BC	
ALIDE_RS17670	CDS	ALIDE_RS17670	NC_014910.1	3703888	3704226	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3703888..3704226)	Alicycliphilus denitrificans BC	
ALIDE_RS17675	CDS	ALIDE_RS17675	NC_014910.1	3704229	3705242	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; major capsid protein	complement(3704229..3705242)	Alicycliphilus denitrificans BC	
ALIDE_RS17680	CDS	ALIDE_RS17680	NC_014910.1	3705270	3705656	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; head decoration protein	complement(3705270..3705656)	Alicycliphilus denitrificans BC	
ALIDE_RS17685	CDS	ALIDE_RS17685	NC_014910.1	3705668	3707017	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; S49 family peptidase	complement(3705668..3707017)	Alicycliphilus denitrificans BC	
ALIDE_RS17690	CDS	ALIDE_RS17690	NC_014910.1	3707020	3708636	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage portal protein	complement(3707020..3708636)	Alicycliphilus denitrificans BC	
ALIDE_RS17695	CDS	ALIDE_RS17695	NC_014910.1	3708640	3708867	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3708640..3708867)	Alicycliphilus denitrificans BC	
ALIDE_RS17700	CDS	ALIDE_RS17700	NC_014910.1	3708922	3709230	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Mor transcription activator family protein	complement(3708922..3709230)	Alicycliphilus denitrificans BC	
ALIDE_RS17705	CDS	ALIDE_RS17705	NC_014910.1	3709236	3711296	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase gpA endonuclease subunit	complement(3709236..3711296)	Alicycliphilus denitrificans BC	
ALIDE_RS23075	CDS	ALIDE_RS23075	NC_014910.1	3711293	3712042	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase small subunit	complement(3711293..3712042)	Alicycliphilus denitrificans BC	
ALIDE_RS17715	CDS	ALIDE_RS17715	NC_014910.1	3712270	3712599	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3712270..3712599)	Alicycliphilus denitrificans BC	
ALIDE_RS23080	CDS	ALIDE_RS23080	NC_014910.1	3712596	3713069	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3712596..3713069)	Alicycliphilus denitrificans BC	
ALIDE_RS23085	CDS	ALIDE_RS23085	NC_014910.1	3713188	3714198	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3713188..3714198)	Alicycliphilus denitrificans BC	
ALIDE_RS17730	CDS	ALIDE_RS17730	NC_014910.1	3714202	3714957	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3714202..3714957)	Alicycliphilus denitrificans BC	
ALIDE_RS23090	CDS	ALIDE_RS23090	NC_014910.1	3714954	3715646	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParB/Srx family N-terminal domain-containing protein	complement(3714954..3715646)	Alicycliphilus denitrificans BC	
ALIDE_RS17740	CDS	ALIDE_RS17740	NC_014910.1	3715665	3716351	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3715665..3716351)	Alicycliphilus denitrificans BC	
ALIDE_RS17745	CDS	ALIDE_RS17745	NC_014910.1	3716354	3717178	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3716354..3717178)	Alicycliphilus denitrificans BC	
ALIDE_RS17750	CDS	ALIDE_RS17750	NC_014910.1	3717175	3717366	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; helix-turn-helix domain-containing protein	complement(3717175..3717366)	Alicycliphilus denitrificans BC	
ALIDE_RS23095	CDS	ALIDE_RS23095	NC_014910.1	3717366	3717914	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage regulatory CII family protein	complement(3717366..3717914)	Alicycliphilus denitrificans BC	
ALIDE_RS17760	CDS	ALIDE_RS17760	NC_014910.1	3717921	3718238	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3717921..3718238)	Alicycliphilus denitrificans BC	
ALIDE_RS24200	CDS	ALIDE_RS24200	NC_014910.1	3718373	3718630	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3718373..3718630	Alicycliphilus denitrificans BC	
ALIDE_RS24205	CDS	ALIDE_RS24205	NC_014910.1	3718786	3719127	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3718786..3719127)	Alicycliphilus denitrificans BC	
ALIDE_RS17765	CDS	ALIDE_RS17765	NC_014910.1	3719159	3719542	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3719159..3719542	Alicycliphilus denitrificans BC	
ALIDE_RS24210	CDS	ALIDE_RS24210	NC_014910.1	3719640	3720188	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; DUF4124 domain-containing protein	3719640..3720188	Alicycliphilus denitrificans BC	
ALIDE_RS23570	CDS	ALIDE_RS23570	NC_014910.1	3720275	3720787	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2511 domain-containing protein	complement(3720275..3720787)	Alicycliphilus denitrificans BC	
ALIDE_RS17775	CDS	ALIDE_RS17775	NC_014910.1	3720896	3721111	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3720896..3721111	Alicycliphilus denitrificans BC	
ALIDE_RS17780	CDS	ALIDE_RS17780	NC_014910.1	3721108	3721410	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3721108..3721410	Alicycliphilus denitrificans BC	
ALIDE_RS17785	CDS	ALIDE_RS17785	NC_014910.1	3721446	3721901	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3721446..3721901)	Alicycliphilus denitrificans BC	
ALIDE_RS17790	CDS	ALIDE_RS17790	NC_014910.1	3722159	3722584	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3722159..3722584	Alicycliphilus denitrificans BC	
ALIDE_RS23100	CDS	ALIDE_RS23100	NC_014910.1	3722627	3723169	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3722627..3723169	Alicycliphilus denitrificans BC	
ALIDE_RS23105	CDS	ALIDE_RS23105	NC_014910.1	3723209	3723754	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3723209..3723754	Alicycliphilus denitrificans BC	
ALIDE_RS17805	CDS	ALIDE_RS17805	NC_014910.1	3723751	3723954	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3723751..3723954	Alicycliphilus denitrificans BC	
ALIDE_RS17810	CDS	ALIDE_RS17810	NC_014910.1	3723951	3724181	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3723951..3724181	Alicycliphilus denitrificans BC	
ALIDE_RS17815	CDS	ALIDE_RS17815	NC_014910.1	3724226	3724579	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3724226..3724579	Alicycliphilus denitrificans BC	
ALIDE_RS23110	CDS	ALIDE_RS23110	NC_014910.1	3724576	3725442	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2303 family protein	3724576..3725442	Alicycliphilus denitrificans BC	
ALIDE_RS17825	CDS	ALIDE_RS17825	NC_014910.1	3725483	3725842	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3725483..3725842	Alicycliphilus denitrificans BC	
ALIDE_RS17830	CDS	ALIDE_RS17830	NC_014910.1	3725868	3726272	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF6378 domain-containing protein	3725868..3726272	Alicycliphilus denitrificans BC	
ALIDE_RS17835	CDS	ALIDE_RS17835	NC_014910.1	3726269	3727264	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3726269..3727264	Alicycliphilus denitrificans BC	
ALIDE_RS23115	CDS	ALIDE_RS23115	NC_014910.1	3727261	3727890	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3727261..3727890	Alicycliphilus denitrificans BC	
ALIDE_RS17845	CDS	ALIDE_RS17845	NC_014910.1	3727887	3728432	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3727887..3728432	Alicycliphilus denitrificans BC	
ALIDE_RS23120	CDS	ALIDE_RS23120	NC_014910.1	3728508	3729059	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3728508..3729059	Alicycliphilus denitrificans BC	
ALIDE_RS17855	CDS	ALIDE_RS17855	NC_014910.1	3729113	3729505	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; four helix bundle protein	3729113..3729505	Alicycliphilus denitrificans BC	
ALIDE_RS17860	CDS	ALIDE_RS17860	NC_014910.1	3729772	3730908	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-directed DNA polymerase	3729772..3730908	Alicycliphilus denitrificans BC	
ALIDE_RS17865	CDS	ALIDE_RS17865	NC_014910.1	3730905	3731951	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage Gp37/Gp68 family protein	3730905..3731951	Alicycliphilus denitrificans BC	
ALIDE_RS17870	CDS	ALIDE_RS17870	NC_014910.1	3731948	3732280	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3731948..3732280	Alicycliphilus denitrificans BC	
ALIDE_RS17875	CDS	ALIDE_RS17875	NC_014910.1	3732288	3734348	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA cytosine methyltransferase	3732288..3734348	Alicycliphilus denitrificans BC	
ALIDE_RS17880	CDS	ALIDE_RS17880	NC_014910.1	3734474	3734728	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3734474..3734728	Alicycliphilus denitrificans BC	
ALIDE_RS17885	CDS	ALIDE_RS17885	NC_014910.1	3734725	3735777	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific integrase	complement(3734725..3735777)	Alicycliphilus denitrificans BC	
ALIDE_RS24215	CDS	ALIDE_RS24215	NC_014910.1	3736270	3736752	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3736270..3736752	Alicycliphilus denitrificans BC	
ALIDE_RS23575	CDS	ALIDE_RS23575	NC_014910.1	3736798	3737112	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; H-NS histone family protein	3736798..3737112	Alicycliphilus denitrificans BC	
ALIDE_RS24220	CDS	ALIDE_RS24220	NC_014910.1	3737947	3738732	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3737947..3738732	Alicycliphilus denitrificans BC	
ALIDE_RS24225	CDS	ALIDE_RS24225	NC_014910.1	3738758	3739435	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3738758..3739435)	Alicycliphilus denitrificans BC	
ALIDE_RS24230	CDS	ALIDE_RS24230	NC_014910.1	3739675	3740067	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3739675..3740067	Alicycliphilus denitrificans BC	
ALIDE_RS17895	CDS	ALIDE_RS17895	NC_014910.1	3740067	3740423	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3740067..3740423	Alicycliphilus denitrificans BC	
ALIDE_RS23580	CDS	ALIDE_RS23580	NC_014910.1	3740553	3740909	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix transcriptional regulator	3740553..3740909	Alicycliphilus denitrificans BC	
ALIDE_RS24235	CDS	ALIDE_RS24235	NC_014910.1	3741094	3741276	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3741094..3741276)	Alicycliphilus denitrificans BC	
ALIDE_RS24240	CDS	ALIDE_RS24240	NC_014910.1	3741478	3741708	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3741478..3741708)	Alicycliphilus denitrificans BC	
ALIDE_RS24245	CDS	ALIDE_RS24245	NC_014910.1	3741674	3741985	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3741674..3741985)	Alicycliphilus denitrificans BC	
ALIDE_RS23585	CDS	mobC	NC_014910.1	3742265	3742690	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; plasmid mobilization relaxosome protein MobC	3742265..3742690	Alicycliphilus denitrificans BC	
ALIDE_RS24250	CDS	ALIDE_RS24250	NC_014910.1	3742693	3744111	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; relaxase/mobilization nuclease domain-containing protein	3742693..3744111	Alicycliphilus denitrificans BC	
ALIDE_RS23590	CDS	ALIDE_RS23590	NC_014910.1	3744160	3744522	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3744160..3744522	Alicycliphilus denitrificans BC	
ALIDE_RS23125	CDS	ALIDE_RS23125	NC_014910.1	3744546	3745481	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Dam family site-specific DNA-(adenine-N6)-methyltransferase	complement(3744546..3745481)	Alicycliphilus denitrificans BC	
ALIDE_RS23130	CDS	ALIDE_RS23130	NC_014910.1	3745535	3746362	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3745535..3746362	Alicycliphilus denitrificans BC	
ALIDE_RS23595	CDS	ALIDE_RS23595	NC_014910.1	3746391	3747548	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific integrase	complement(3746391..3747548)	Alicycliphilus denitrificans BC	
ALIDE_RS17910	CDS	ALIDE_RS17910	NC_014910.1	3747751	3748650	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; COX15/CtaA family protein	complement(3747751..3748650)	Alicycliphilus denitrificans BC	
ALIDE_RS24620	CDS	ALIDE_RS24620	NC_014910.1	3748917	3749069	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3748917..3749069	Alicycliphilus denitrificans BC	
ALIDE_RS17915	CDS	ALIDE_RS17915	NC_014910.1	3749083	3749622	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c oxidase subunit II	3749083..3749622	Alicycliphilus denitrificans BC	
ALIDE_RS17920	CDS	ALIDE_RS17920	NC_014910.1	3749636	3751336	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cbb3-type cytochrome c oxidase subunit I	3749636..3751336	Alicycliphilus denitrificans BC	
ALIDE_RS17925	CDS	cyoE	NC_014910.1	3751354	3752256	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; heme o synthase	3751354..3752256	Alicycliphilus denitrificans BC	
ALIDE_RS17930	CDS	ALIDE_RS17930	NC_014910.1	3752352	3753131	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SCO family protein	3752352..3753131	Alicycliphilus denitrificans BC	
ALIDE_RS17935	CDS	ALIDE_RS17935	NC_014910.1	3753146	3754729	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome b N-terminal domain-containing protein	3753146..3754729	Alicycliphilus denitrificans BC	
ALIDE_RS17940	CDS	ALIDE_RS17940	NC_014910.1	3754726	3755229	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3754726..3755229	Alicycliphilus denitrificans BC	
ALIDE_RS17945	CDS	ALIDE_RS17945	NC_014910.1	3755226	3756674	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cbb3-type cytochrome c oxidase subunit I	3755226..3756674	Alicycliphilus denitrificans BC	
ALIDE_RS17950	CDS	ALIDE_RS17950	NC_014910.1	3756671	3758599	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding oxidoreductase	3756671..3758599	Alicycliphilus denitrificans BC	
ALIDE_RS17955	CDS	ALIDE_RS17955	NC_014910.1	3758615	3760018	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipase D-like domain-containing protein	complement(3758615..3760018)	Alicycliphilus denitrificans BC	
ALIDE_RS17960	CDS	ALIDE_RS17960	NC_014910.1	3760015	3761391	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	complement(3760015..3761391)	Alicycliphilus denitrificans BC	
ALIDE_RS17965	CDS	ALIDE_RS17965	NC_014910.1	3761388	3762044	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	complement(3761388..3762044)	Alicycliphilus denitrificans BC	
ALIDE_RS17970	CDS	ALIDE_RS17970	NC_014910.1	3762085	3763593	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DegQ family serine endoprotease	complement(3762085..3763593)	Alicycliphilus denitrificans BC	
ALIDE_RS17975	CDS	arsC	NC_014910.1	3763660	3764010	R	This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance.; This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; arsenate reductase (glutaredoxin)	complement(3763660..3764010)	Alicycliphilus denitrificans BC	
ALIDE_RS17980	CDS	ALIDE_RS17980	NC_014910.1	3764026	3765687	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter permease	complement(3764026..3765687)	Alicycliphilus denitrificans BC	
ALIDE_RS17985	CDS	ALIDE_RS17985	NC_014910.1	3765759	3766823	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	3765759..3766823	Alicycliphilus denitrificans BC	
ALIDE_RS17990	CDS	ALIDE_RS17990	NC_014910.1	3766826	3767566	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipid acyltransferase family protein	complement(3766826..3767566)	Alicycliphilus denitrificans BC	
ALIDE_RS17995	CDS	ALIDE_RS17995	NC_014910.1	3767577	3768872	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotase	complement(3767577..3768872)	Alicycliphilus denitrificans BC	
ALIDE_RS18000	CDS	ALIDE_RS18000	NC_014910.1	3768940	3769902	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate carbamoyltransferase catalytic subunit	complement(3768940..3769902)	Alicycliphilus denitrificans BC	
ALIDE_RS18005	CDS	pyrR	NC_014910.1	3769905	3770441	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	complement(3769905..3770441)	Alicycliphilus denitrificans BC	
ALIDE_RS18010	CDS	ruvX	NC_014910.1	3770438	3770851	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction resolvase RuvX	complement(3770438..3770851)	Alicycliphilus denitrificans BC	
ALIDE_RS18015	CDS	ALIDE_RS18015	NC_014910.1	3770848	3771474	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YqgE/AlgH family protein	complement(3770848..3771474)	Alicycliphilus denitrificans BC	
ALIDE_RS18020	CDS	ALIDE_RS18020	NC_014910.1	3771563	3777406	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Hpt domain-containing protein	complement(3771563..3777406)	Alicycliphilus denitrificans BC	
ALIDE_RS18025	CDS	ALIDE_RS18025	NC_014910.1	3777450	3779714	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	complement(3777450..3779714)	Alicycliphilus denitrificans BC	
ALIDE_RS18030	CDS	ALIDE_RS18030	NC_014910.1	3779735	3780262	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheW	complement(3779735..3780262)	Alicycliphilus denitrificans BC	
ALIDE_RS18035	CDS	ALIDE_RS18035	NC_014910.1	3780279	3780644	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	complement(3780279..3780644)	Alicycliphilus denitrificans BC	
ALIDE_RS18040	CDS	ALIDE_RS18040	NC_014910.1	3780644	3781048	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	complement(3780644..3781048)	Alicycliphilus denitrificans BC	
ALIDE_RS23600	CDS	ALIDE_RS23600	NC_014910.1	3781100	3781273	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; rubredoxin	complement(3781100..3781273)	Alicycliphilus denitrificans BC	
ALIDE_RS18045	CDS	ALIDE_RS18045	NC_014910.1	3781413	3782315	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	3781413..3782315	Alicycliphilus denitrificans BC	
ALIDE_RS18050	CDS	hemL	NC_014910.1	3782299	3783603	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate-1-semialdehyde 2,1-aminomutase	3782299..3783603	Alicycliphilus denitrificans BC	
ALIDE_RS18055	CDS	purH	NC_014910.1	3783705	3785309	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	complement(3783705..3785309)	Alicycliphilus denitrificans BC	
ALIDE_RS18060	CDS	ALIDE_RS18060	NC_014910.1	3785385	3785621	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Fis family transcriptional regulator	complement(3785385..3785621)	Alicycliphilus denitrificans BC	
ALIDE_RS18065	CDS	dusB	NC_014910.1	3785599	3786657	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA dihydrouridine synthase DusB	complement(3785599..3786657)	Alicycliphilus denitrificans BC	
ALIDE_RS18070	CDS	ALIDE_RS18070	NC_014910.1	3786806	3787315	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YqaA family protein	3786806..3787315	Alicycliphilus denitrificans BC	
ALIDE_RS18075	CDS	ALIDE_RS18075	NC_014910.1	3787322	3788296	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(3787322..3788296)	Alicycliphilus denitrificans BC	
ALIDE_RS18080	CDS	ALIDE_RS18080	NC_014910.1	3788492	3789499	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein BugE	3788492..3789499	Alicycliphilus denitrificans BC	
ALIDE_RS18085	CDS	ALIDE_RS18085	NC_014910.1	3789513	3790958	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; M20 family metallopeptidase	3789513..3790958	Alicycliphilus denitrificans BC	
ALIDE_RS18090	CDS	ALIDE_RS18090	NC_014910.1	3791014	3792525	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter permease	complement(3791014..3792525)	Alicycliphilus denitrificans BC	
ALIDE_RS18095	CDS	ALIDE_RS18095	NC_014910.1	3792559	3793047	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter TctB family protein	complement(3792559..3793047)	Alicycliphilus denitrificans BC	
ALIDE_RS18100	CDS	ALIDE_RS18100	NC_014910.1	3793243	3794625	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAMP domain-containing sensor histidine kinase	complement(3793243..3794625)	Alicycliphilus denitrificans BC	
ALIDE_RS18105	CDS	ALIDE_RS18105	NC_014910.1	3794622	3795314	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	complement(3794622..3795314)	Alicycliphilus denitrificans BC	
ALIDE_RS18110	CDS	ychF	NC_014910.1	3795324	3796418	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; redox-regulated ATPase YchF	complement(3795324..3796418)	Alicycliphilus denitrificans BC	
ALIDE_RS18115	CDS	ALIDE_RS18115	NC_014910.1	3796560	3797690	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent monooxygenase	3796560..3797690	Alicycliphilus denitrificans BC	
ALIDE_RS18120	CDS	ALIDE_RS18120	NC_014910.1	3797734	3798453	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DsbC family protein	3797734..3798453	Alicycliphilus denitrificans BC	
ALIDE_RS18125	CDS	ALIDE_RS18125	NC_014910.1	3798598	3800379	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; M61 family metallopeptidase	3798598..3800379	Alicycliphilus denitrificans BC	
ALIDE_RS18130	CDS	ALIDE_RS18130	NC_014910.1	3800437	3801216	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase	3800437..3801216	Alicycliphilus denitrificans BC	
ALIDE_RS18140	CDS	ALIDE_RS18140	NC_014910.1	3801400	3801801	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3801400..3801801	Alicycliphilus denitrificans BC	
ALIDE_RS18145	CDS	miaB	NC_014910.1	3801869	3803218	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	3801869..3803218	Alicycliphilus denitrificans BC	
ALIDE_RS18150	CDS	ffh	NC_014910.1	3803263	3804642	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; signal recognition particle protein	complement(3803263..3804642)	Alicycliphilus denitrificans BC	
ALIDE_RS18155	CDS	ccsA	NC_014910.1	3804732	3805529	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c biogenesis protein CcsA	3804732..3805529	Alicycliphilus denitrificans BC	
ALIDE_RS18160	CDS	ALIDE_RS18160	NC_014910.1	3805526	3805753	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PP0621 family protein	3805526..3805753	Alicycliphilus denitrificans BC	
ALIDE_RS18165	CDS	ALIDE_RS18165	NC_014910.1	3805766	3807469	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAMP domain-containing sensor histidine kinase	3805766..3807469	Alicycliphilus denitrificans BC	
ALIDE_RS18170	CDS	ALIDE_RS18170	NC_014910.1	3807486	3808976	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54 dependent transcriptional regulator	3807486..3808976	Alicycliphilus denitrificans BC	
ALIDE_RS18175	CDS	ampD	NC_014910.1	3808960	3809541	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	3808960..3809541	Alicycliphilus denitrificans BC	
ALIDE_RS18180	CDS	ALIDE_RS18180	NC_014910.1	3809826	3812738	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside-diphosphate reductase subunit alpha	3809826..3812738	Alicycliphilus denitrificans BC	
ALIDE_RS18185	CDS	ALIDE_RS18185	NC_014910.1	3812877	3814067	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit beta	3812877..3814067	Alicycliphilus denitrificans BC	
ALIDE_RS18190	CDS	ALIDE_RS18190	NC_014910.1	3814247	3814795	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3814247..3814795	Alicycliphilus denitrificans BC	
ALIDE_RS18195	CDS	ALIDE_RS18195	NC_014910.1	3814878	3815774	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate kinase family protein	complement(3814878..3815774)	Alicycliphilus denitrificans BC	
ALIDE_RS18200	CDS	ALIDE_RS18200	NC_014910.1	3815809	3816963	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-ribbon and DUF3426 domain-containing protein	complement(3815809..3816963)	Alicycliphilus denitrificans BC	
ALIDE_RS18205	CDS	prmA	NC_014910.1	3817017	3817913	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L11 methyltransferase	complement(3817017..3817913)	Alicycliphilus denitrificans BC	
ALIDE_RS18210	CDS	accC	NC_014910.1	3818006	3819355	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxylase subunit	complement(3818006..3819355)	Alicycliphilus denitrificans BC	
ALIDE_RS18215	CDS	accB	NC_014910.1	3819371	3819829	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxyl carrier protein	complement(3819371..3819829)	Alicycliphilus denitrificans BC	
ALIDE_RS18220	CDS	ALIDE_RS18220	NC_014910.1	3819940	3820515	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TlpA disulfide reductase family protein	complement(3819940..3820515)	Alicycliphilus denitrificans BC	
ALIDE_RS18225	CDS	ALIDE_RS18225	NC_014910.1	3820512	3821126	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3820512..3821126)	Alicycliphilus denitrificans BC	
ALIDE_RS18230	CDS	mpl	NC_014910.1	3821242	3822633	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	3821242..3822633	Alicycliphilus denitrificans BC	
ALIDE_RS18235	CDS	ALIDE_RS18235	NC_014910.1	3822681	3822992	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3822681..3822992)	Alicycliphilus denitrificans BC	
ALIDE_RS18240	CDS	ALIDE_RS18240	NC_014910.1	3823078	3824196	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-7-phosphoheptulonate synthase	complement(3823078..3824196)	Alicycliphilus denitrificans BC	
ALIDE_RS18245	CDS	tldD	NC_014910.1	3824437	3825897	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloprotease TldD	complement(3824437..3825897)	Alicycliphilus denitrificans BC	
ALIDE_RS18250	CDS	rodA	NC_014910.1	3825936	3827117	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein RodA	complement(3825936..3827117)	Alicycliphilus denitrificans BC	
ALIDE_RS18255	CDS	ALIDE_RS18255	NC_014910.1	3827153	3827740	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YqiA/YcfP family alpha/beta fold hydrolase	3827153..3827740	Alicycliphilus denitrificans BC	
ALIDE_RS18260	CDS	ALIDE_RS18260	NC_014910.1	3827843	3829402	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; O-antigen ligase family protein	complement(3827843..3829402)	Alicycliphilus denitrificans BC	
ALIDE_RS18265	CDS	ALIDE_RS18265	NC_014910.1	3829552	3829965	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome	complement(3829552..3829965)	Alicycliphilus denitrificans BC	
ALIDE_RS18270	CDS	ALIDE_RS18270	NC_014910.1	3829962	3830543	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ferritin-like domain-containing protein	complement(3829962..3830543)	Alicycliphilus denitrificans BC	
ALIDE_RS18275	CDS	ALIDE_RS18275	NC_014910.1	3830632	3831351	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor	complement(3830632..3831351)	Alicycliphilus denitrificans BC	
ALIDE_RS18280	CDS	ALIDE_RS18280	NC_014910.1	3831475	3833553	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNB domain-containing ribonuclease	3831475..3833553	Alicycliphilus denitrificans BC	
ALIDE_RS18285	CDS	ALIDE_RS18285	NC_014910.1	3833563	3834423	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB family protein	3833563..3834423	Alicycliphilus denitrificans BC	
ALIDE_RS18290	CDS	aroE	NC_014910.1	3834430	3835278	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate dehydrogenase	3834430..3835278	Alicycliphilus denitrificans BC	
ALIDE_RS18295	CDS	mtgA	NC_014910.1	3835292	3836008	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; monofunctional biosynthetic peptidoglycan transglycosylase	3835292..3836008	Alicycliphilus denitrificans BC	
ALIDE_RS18300	CDS	ALIDE_RS18300	NC_014910.1	3836032	3836358	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3836032..3836358	Alicycliphilus denitrificans BC	
ALIDE_RS18305	CDS	ALIDE_RS18305	NC_014910.1	3836512	3837608	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	complement(join(3836512..3837347,3837347..3837608))	Alicycliphilus denitrificans BC	
ALIDE_RS18315	CDS	ruvC	NC_014910.1	3837961	3838509	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; crossover junction endodeoxyribonuclease RuvC	3837961..3838509	Alicycliphilus denitrificans BC	
ALIDE_RS18320	CDS	ALIDE_RS18320	NC_014910.1	3838512	3839210	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	complement(3838512..3839210)	Alicycliphilus denitrificans BC	
ALIDE_RS18325	CDS	ALIDE_RS18325	NC_014910.1	3839638	3840459	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class I SAM-dependent methyltransferase	3839638..3840459	Alicycliphilus denitrificans BC	
ALIDE_RS18330	CDS	thiC	NC_014910.1	3840471	3842318	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomethylpyrimidine synthase ThiC	complement(3840471..3842318)	Alicycliphilus denitrificans BC	
ALIDE_RS24625	CDS	ALIDE_RS24625	NC_014910.1	3842555	3842731	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3842555..3842731)	Alicycliphilus denitrificans BC	
ALIDE_RS18335	CDS	lpxC	NC_014910.1	3842741	3843664	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-3-O-acyl-N-acetylglucosamine deacetylase	complement(3842741..3843664)	Alicycliphilus denitrificans BC	
ALIDE_RS18340	CDS	ALIDE_RS18340	NC_014910.1	3843704	3844468	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	complement(3843704..3844468)	Alicycliphilus denitrificans BC	
ALIDE_RS18345	CDS	ALIDE_RS18345	NC_014910.1	3844558	3845640	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclase family protein	3844558..3845640	Alicycliphilus denitrificans BC	
ALIDE_RS18350	CDS	ALIDE_RS18350	NC_014910.1	3845652	3847370	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	3845652..3847370	Alicycliphilus denitrificans BC	
ALIDE_RS18355	CDS	ALIDE_RS18355	NC_014910.1	3847367	3848110	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	3847367..3848110	Alicycliphilus denitrificans BC	
ALIDE_RS18360	CDS	ALIDE_RS18360	NC_014910.1	3848184	3849389	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	3848184..3849389	Alicycliphilus denitrificans BC	
ALIDE_RS18365	CDS	ALIDE_RS18365	NC_014910.1	3849406	3850368	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3849406..3850368	Alicycliphilus denitrificans BC	
ALIDE_RS18370	CDS	ALIDE_RS18370	NC_014910.1	3850372	3851571	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	3850372..3851571	Alicycliphilus denitrificans BC	
ALIDE_RS18375	CDS	ftsZ	NC_014910.1	3851652	3852872	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsZ	complement(3851652..3852872)	Alicycliphilus denitrificans BC	
ALIDE_RS18380	CDS	ftsA	NC_014910.1	3853044	3854273	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsA	complement(3853044..3854273)	Alicycliphilus denitrificans BC	
ALIDE_RS18385	CDS	ALIDE_RS18385	NC_014910.1	3854279	3855151	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsQ/DivIB	complement(3854279..3855151)	Alicycliphilus denitrificans BC	
ALIDE_RS18390	CDS	ALIDE_RS18390	NC_014910.1	3855156	3856124	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanine--D-alanine ligase	complement(3855156..3856124)	Alicycliphilus denitrificans BC	
ALIDE_RS18395	CDS	murC	NC_014910.1	3856121	3857554	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate--L-alanine ligase	complement(3856121..3857554)	Alicycliphilus denitrificans BC	
ALIDE_RS18400	CDS	murG	NC_014910.1	3857551	3858615	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	complement(3857551..3858615)	Alicycliphilus denitrificans BC	
ALIDE_RS18405	CDS	ftsW	NC_014910.1	3858612	3859883	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative lipid II flippase FtsW	complement(3858612..3859883)	Alicycliphilus denitrificans BC	
ALIDE_RS18410	CDS	murD	NC_014910.1	3859880	3861661	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	complement(3859880..3861661)	Alicycliphilus denitrificans BC	
ALIDE_RS18415	CDS	mraY	NC_014910.1	3861658	3862836	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-N-acetylmuramoyl-pentapeptide- transferase	complement(3861658..3862836)	Alicycliphilus denitrificans BC	
ALIDE_RS18420	CDS	murF	NC_014910.1	3862827	3864218	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	complement(3862827..3864218)	Alicycliphilus denitrificans BC	
ALIDE_RS18425	CDS	ALIDE_RS18425	NC_014910.1	3864215	3865720	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	complement(3864215..3865720)	Alicycliphilus denitrificans BC	
ALIDE_RS18430	CDS	ALIDE_RS18430	NC_014910.1	3865717	3867465	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 2	complement(3865717..3867465)	Alicycliphilus denitrificans BC	
ALIDE_RS18435	CDS	ftsL	NC_014910.1	3867462	3867776	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsL	complement(3867462..3867776)	Alicycliphilus denitrificans BC	
ALIDE_RS18440	CDS	rsmH	NC_014910.1	3867773	3868699	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	complement(3867773..3868699)	Alicycliphilus denitrificans BC	
ALIDE_RS18445	CDS	mraZ	NC_014910.1	3868709	3869137	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; division/cell wall cluster transcriptional repressor MraZ	complement(3868709..3869137)	Alicycliphilus denitrificans BC	
ALIDE_RS18450	CDS	hslU	NC_014910.1	3869383	3870696	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease ATPase subunit HslU	complement(3869383..3870696)	Alicycliphilus denitrificans BC	
ALIDE_RS18455	CDS	hslV	NC_014910.1	3870774	3871319	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease subunit HslV	complement(3870774..3871319)	Alicycliphilus denitrificans BC	
ALIDE_RS18460	CDS	ALIDE_RS18460	NC_014910.1	3871380	3873116	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; STAS domain-containing protein	complement(3871380..3873116)	Alicycliphilus denitrificans BC	
ALIDE_RS18465	CDS	dksA	NC_014910.1	3873148	3873639	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase-binding protein DksA	complement(3873148..3873639)	Alicycliphilus denitrificans BC	
ALIDE_RS18470	CDS	ALIDE_RS18470	NC_014910.1	3873990	3875060	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein	complement(3873990..3875060)	Alicycliphilus denitrificans BC	
ALIDE_RS23605	CDS	ALIDE_RS23605	NC_014910.1	3875153	3876268	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hexameric tyrosine-coordinated heme protein	complement(3875153..3876268)	Alicycliphilus denitrificans BC	
ALIDE_RS18485	CDS	ALIDE_RS18485	NC_014910.1	3876261	3876935	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	complement(3876261..3876935)	Alicycliphilus denitrificans BC	
ALIDE_RS18490	CDS	ALIDE_RS18490	NC_014910.1	3877016	3877402	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	3877016..3877402	Alicycliphilus denitrificans BC	
ALIDE_RS23135	CDS	ALIDE_RS23135	NC_014910.1	3877680	3878156	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3877680..3878156)	Alicycliphilus denitrificans BC	
ALIDE_RS23140	CDS	ALIDE_RS23140	NC_014910.1	3878392	3879921	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PAS domain-containing sensor histidine kinase	3878392..3879921	Alicycliphilus denitrificans BC	
ALIDE_RS18500	CDS	ALIDE_RS18500	NC_014910.1	3879964	3880632	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; excisionase family DNA-binding protein	complement(3879964..3880632)	Alicycliphilus denitrificans BC	
ALIDE_RS18505	CDS	ALIDE_RS18505	NC_014910.1	3880697	3881083	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	3880697..3881083	Alicycliphilus denitrificans BC	
ALIDE_RS18510	CDS	ALIDE_RS18510	NC_014910.1	3881080	3881889	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HD domain-containing phosphohydrolase	3881080..3881889	Alicycliphilus denitrificans BC	
ALIDE_RS18515	CDS	ALIDE_RS18515	NC_014910.1	3882027	3884105	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PAS domain-containing sensor histidine kinase	3882027..3884105	Alicycliphilus denitrificans BC	
ALIDE_RS18520	CDS	ALIDE_RS18520	NC_014910.1	3884087	3885844	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	3884087..3885844	Alicycliphilus denitrificans BC	
ALIDE_RS18525	CDS	ALIDE_RS18525	NC_014910.1	3886038	3887732	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	3886038..3887732	Alicycliphilus denitrificans BC	
ALIDE_RS18530	CDS	ALIDE_RS18530	NC_014910.1	3887749	3888711	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase XerC	complement(3887749..3888711)	Alicycliphilus denitrificans BC	
ALIDE_RS18535	CDS	ALIDE_RS18535	NC_014910.1	3888805	3889500	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF484 family protein	complement(3888805..3889500)	Alicycliphilus denitrificans BC	
ALIDE_RS18540	CDS	dapF	NC_014910.1	3889497	3890375	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate epimerase	complement(3889497..3890375)	Alicycliphilus denitrificans BC	
ALIDE_RS18545	CDS	ALIDE_RS18545	NC_014910.1	3890451	3892145	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MBL fold metallo-hydrolase	3890451..3892145	Alicycliphilus denitrificans BC	
ALIDE_RS18550	CDS	ALIDE_RS18550	NC_014910.1	3892138	3892863	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA pseudouridine synthase	3892138..3892863	Alicycliphilus denitrificans BC	
ALIDE_RS18555	CDS	ALIDE_RS18555	NC_014910.1	3893359	3893529	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3893359..3893529)	Alicycliphilus denitrificans BC	
ALIDE_RS18560	CDS	cysK	NC_014910.1	3893696	3894616	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase A	3893696..3894616	Alicycliphilus denitrificans BC	
ALIDE_RS18565	CDS	ALIDE_RS18565	NC_014910.1	3894647	3895747	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; J domain-containing protein	3894647..3895747	Alicycliphilus denitrificans BC	
ALIDE_RS18570	CDS	ALIDE_RS18570	NC_014910.1	3895879	3897636	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent protein	3895879..3897636	Alicycliphilus denitrificans BC	
ALIDE_RS18575	CDS	ALIDE_RS18575	NC_014910.1	3897701	3898150	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymuconolactone decarboxylase family protein	3897701..3898150	Alicycliphilus denitrificans BC	
ALIDE_RS18580	CDS	ALIDE_RS18580	NC_014910.1	3898189	3899091	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(3898189..3899091)	Alicycliphilus denitrificans BC	
ALIDE_RS18585	CDS	ALIDE_RS18585	NC_014910.1	3899161	3900030	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA ester lyase	3899161..3900030	Alicycliphilus denitrificans BC	
ALIDE_RS18590	CDS	ALIDE_RS18590	NC_014910.1	3900058	3901035	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3900058..3901035	Alicycliphilus denitrificans BC	
ALIDE_RS18595	CDS	ALIDE_RS18595	NC_014910.1	3901099	3902268	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	3901099..3902268	Alicycliphilus denitrificans BC	
ALIDE_RS18600	CDS	ALIDE_RS18600	NC_014910.1	3902265	3903107	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidohydrolase family protein	3902265..3903107	Alicycliphilus denitrificans BC	
ALIDE_RS18605	CDS	ALIDE_RS18605	NC_014910.1	3903124	3904080	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3903124..3904080	Alicycliphilus denitrificans BC	
ALIDE_RS18610	CDS	ALIDE_RS18610	NC_014910.1	3904135	3904641	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MarR family transcriptional regulator	complement(3904135..3904641)	Alicycliphilus denitrificans BC	
ALIDE_RS18615	CDS	badH	NC_014910.1	3904772	3905539	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase	3904772..3905539	Alicycliphilus denitrificans BC	
ALIDE_RS18620	CDS	badI	NC_014910.1	3905583	3906365	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-ketocyclohexanecarboxyl-CoA hydrolase	3905583..3906365	Alicycliphilus denitrificans BC	
ALIDE_RS18625	CDS	aliB	NC_014910.1	3906385	3907542	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclohexanecarboxyl-CoA dehydrogenase	3906385..3907542	Alicycliphilus denitrificans BC	
ALIDE_RS18630	CDS	aliA	NC_014910.1	3907578	3909233	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclohexanecarboxylate-CoA ligase	3907578..3909233	Alicycliphilus denitrificans BC	
ALIDE_RS18635	CDS	ALIDE_RS18635	NC_014910.1	3909334	3910266	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding protein	complement(3909334..3910266)	Alicycliphilus denitrificans BC	
ALIDE_RS18640	CDS	ALIDE_RS18640	NC_014910.1	3910284	3911033	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit beta/FixA family protein	complement(3910284..3911033)	Alicycliphilus denitrificans BC	
ALIDE_RS18645	CDS	ALIDE_RS18645	NC_014910.1	3911058	3912032	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitronate monooxygenase family protein	complement(3911058..3912032)	Alicycliphilus denitrificans BC	
ALIDE_RS18650	CDS	ALIDE_RS18650	NC_014910.1	3912040	3913035	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(3912040..3913035)	Alicycliphilus denitrificans BC	
ALIDE_RS18655	CDS	ALIDE_RS18655	NC_014910.1	3913108	3914340	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(3913108..3914340)	Alicycliphilus denitrificans BC	
ALIDE_RS18660	CDS	ALIDE_RS18660	NC_014910.1	3914365	3914787	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PaaI family thioesterase	complement(3914365..3914787)	Alicycliphilus denitrificans BC	
ALIDE_RS18665	CDS	ALIDE_RS18665	NC_014910.1	3914824	3915630	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase	complement(3914824..3915630)	Alicycliphilus denitrificans BC	
ALIDE_RS18670	CDS	ALIDE_RS18670	NC_014910.1	3915748	3916878	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3915748..3916878)	Alicycliphilus denitrificans BC	
ALIDE_RS18675	CDS	ALIDE_RS18675	NC_014910.1	3916889	3918085	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3916889..3918085)	Alicycliphilus denitrificans BC	
ALIDE_RS18680	CDS	ALIDE_RS18680	NC_014910.1	3918098	3919297	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA C-acyltransferase	complement(3918098..3919297)	Alicycliphilus denitrificans BC	
ALIDE_RS18685	CDS	ALIDE_RS18685	NC_014910.1	3919443	3921560	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein	complement(3919443..3921560)	Alicycliphilus denitrificans BC	
ALIDE_RS18690	CDS	ALIDE_RS18690	NC_014910.1	3921671	3922579	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	3921671..3922579	Alicycliphilus denitrificans BC	
ALIDE_RS18695	CDS	ALIDE_RS18695	NC_014910.1	3922617	3922931	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1153 domain-containing protein	3922617..3922931	Alicycliphilus denitrificans BC	
ALIDE_RS24820	CDS	ALIDE_RS24820	NC_014910.1	3922928	3923185	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3922928..3923185	Alicycliphilus denitrificans BC	
ALIDE_RS18700	CDS	ALIDE_RS18700	NC_014910.1	3923189	3923749	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	3923189..3923749	Alicycliphilus denitrificans BC	
ALIDE_RS18705	CDS	ALIDE_RS18705	NC_014910.1	3923781	3924041	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3923781..3924041	Alicycliphilus denitrificans BC	
ALIDE_RS18715	CDS	ALIDE_RS18715	NC_014910.1	3924165	3925399	D	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	join(3924165..3924453,3924453..3925399)	Alicycliphilus denitrificans BC	
ALIDE_RS18720	CDS	ALIDE_RS18720	NC_014910.1	3925534	3926630	R	programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	complement(join(3925534..3926369,3926369..3926630))	Alicycliphilus denitrificans BC	
ALIDE_RS23610	CDS	ALIDE_RS23610	NC_014910.1	3926725	3926997	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	3926725..3926997	Alicycliphilus denitrificans BC	
ALIDE_RS24480	CDS	ALIDE_RS24480	NC_014910.1	3927121	3927270	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3927121..3927270)	Alicycliphilus denitrificans BC	
ALIDE_RS18730	CDS	ALIDE_RS18730	NC_014910.1	3927302	3928816	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS66 family transposase	complement(3927302..3928816)	Alicycliphilus denitrificans BC	
ALIDE_RS18735	CDS	tnpB	NC_014910.1	3928899	3929231	R	TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS66 family insertion sequence element accessory protein TnpB	complement(3928899..3929231)	Alicycliphilus denitrificans BC	
ALIDE_RS18740	CDS	ALIDE_RS18740	NC_014910.1	3929228	3929656	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase	complement(3929228..3929656)	Alicycliphilus denitrificans BC	
ALIDE_RS18745	CDS	ALIDE_RS18745	NC_014910.1	3929739	3929969	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(<3929739..3929969)	Alicycliphilus denitrificans BC	
ALIDE_RS18750	CDS	htpX	NC_014910.1	3930055	3930927	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; protease HtpX	complement(3930055..3930927)	Alicycliphilus denitrificans BC	
ALIDE_RS18755	CDS	ALIDE_RS18755	NC_014910.1	3931054	3931755	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3025 domain-containing protein	complement(3931054..3931755)	Alicycliphilus denitrificans BC	
ALIDE_RS18760	CDS	pyrC	NC_014910.1	3931827	3932876	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotase	complement(3931827..3932876)	Alicycliphilus denitrificans BC	
ALIDE_RS24825	CDS	ALIDE_RS24825	NC_014910.1	3932998	3933192	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(3932998..3933192)	Alicycliphilus denitrificans BC	
ALIDE_RS18770	CDS	ALIDE_RS18770	NC_014910.1	3933633	3934022	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF488 family protein	3933633..3934022	Alicycliphilus denitrificans BC	
ALIDE_RS18775	CDS	ALIDE_RS18775	NC_014910.1	3934057	3934515	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymuconolactone decarboxylase family protein	3934057..3934515	Alicycliphilus denitrificans BC	
ALIDE_RS18780	CDS	uvrA	NC_014910.1	3934536	3940370	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit UvrA	complement(3934536..3940370)	Alicycliphilus denitrificans BC	
ALIDE_RS18785	CDS	ALIDE_RS18785	NC_014910.1	3940504	3941616	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	3940504..3941616	Alicycliphilus denitrificans BC	
ALIDE_RS24630	CDS	ALIDE_RS24630	NC_014910.1	3941687	3941854	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(3941687..3941854)	Alicycliphilus denitrificans BC	
ALIDE_RS18790	CDS	ALIDE_RS18790	NC_014910.1	3942000	3943019	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; porin	complement(3942000..3943019)	Alicycliphilus denitrificans BC	
ALIDE_RS18795	CDS	ALIDE_RS18795	NC_014910.1	3943222	3944916	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(3943222..3944916)	Alicycliphilus denitrificans BC	
ALIDE_RS18800	CDS	ALIDE_RS18800	NC_014910.1	3945233	3945541	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF485 domain-containing protein	3945233..3945541	Alicycliphilus denitrificans BC	
ALIDE_RS18805	CDS	ALIDE_RS18805	NC_014910.1	3945538	3947274	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation acetate symporter	3945538..3947274	Alicycliphilus denitrificans BC	
ALIDE_RS18810	CDS	ALIDE_RS18810	NC_014910.1	3947398	3948063	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3'-5' exonuclease	complement(3947398..3948063)	Alicycliphilus denitrificans BC	
ALIDE_RS18815	CDS	ALIDE_RS18815	NC_014910.1	3948060	3949874	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF294 nucleotidyltransferase-like domain-containing protein	complement(3948060..3949874)	Alicycliphilus denitrificans BC	
ALIDE_RS18820	CDS	ALIDE_RS18820	NC_014910.1	3949897	3950538	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DsbA family protein	complement(3949897..3950538)	Alicycliphilus denitrificans BC	
ALIDE_RS18825	CDS	ALIDE_RS18825	NC_014910.1	3950535	3950795	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1289 domain-containing protein	complement(3950535..3950795)	Alicycliphilus denitrificans BC	
ALIDE_RS18830	CDS	ALIDE_RS18830	NC_014910.1	3950792	3951286	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YbaK/EbsC family protein	complement(3950792..3951286)	Alicycliphilus denitrificans BC	
ALIDE_RS18835	CDS	ALIDE_RS18835	NC_014910.1	3951292	3952206	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylglutaryl-CoA lyase	complement(3951292..3952206)	Alicycliphilus denitrificans BC	
ALIDE_RS18840	CDS	ALIDE_RS18840	NC_014910.1	3952492	3953412	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glyoxylate/hydroxypyruvate reductase A	complement(3952492..3953412)	Alicycliphilus denitrificans BC	
ALIDE_RS18845	CDS	ALIDE_RS18845	NC_014910.1	3953450	3955471	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	complement(3953450..3955471)	Alicycliphilus denitrificans BC	
ALIDE_RS18850	CDS	ALIDE_RS18850	NC_014910.1	3955472	3956191	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4126 domain-containing protein	complement(3955472..3956191)	Alicycliphilus denitrificans BC	
ALIDE_RS18855	CDS	ALIDE_RS18855	NC_014910.1	3956213	3956992	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase/isomerase family protein	complement(3956213..3956992)	Alicycliphilus denitrificans BC	
ALIDE_RS18860	CDS	ALIDE_RS18860	NC_014910.1	3957003	3958607	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxyl transferase domain-containing protein	complement(3957003..3958607)	Alicycliphilus denitrificans BC	
ALIDE_RS18865	CDS	ALIDE_RS18865	NC_014910.1	3958604	3960325	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(3958604..3960325)	Alicycliphilus denitrificans BC	
ALIDE_RS18870	CDS	ALIDE_RS18870	NC_014910.1	3960471	3961529	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator ligand-binding domain-containing protein	3960471..3961529	Alicycliphilus denitrificans BC	
ALIDE_RS18875	CDS	ALIDE_RS18875	NC_014910.1	3961589	3962254	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase family protein	3961589..3962254	Alicycliphilus denitrificans BC	
ALIDE_RS18880	CDS	ALIDE_RS18880	NC_014910.1	3962342	3963955	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GMC family oxidoreductase N-terminal domain-containing protein	3962342..3963955	Alicycliphilus denitrificans BC	
ALIDE_RS18885	CDS	ALIDE_RS18885	NC_014910.1	3964101	3965300	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	3964101..3965300	Alicycliphilus denitrificans BC	
ALIDE_RS18890	CDS	ALIDE_RS18890	NC_014910.1	3965429	3966349	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	3965429..3966349	Alicycliphilus denitrificans BC	
ALIDE_RS18895	CDS	ALIDE_RS18895	NC_014910.1	3966346	3968160	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter ATP-binding protein/permease	3966346..3968160	Alicycliphilus denitrificans BC	
ALIDE_RS18900	CDS	ALIDE_RS18900	NC_014910.1	3968150	3968872	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	3968150..3968872	Alicycliphilus denitrificans BC	
ALIDE_RS18905	CDS	ALIDE_RS18905	NC_014910.1	3969040	3970650	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; GMC family oxidoreductase N-terminal domain-containing protein	3969040..3970650	Alicycliphilus denitrificans BC	
ALIDE_RS18910	CDS	ALIDE_RS18910	NC_014910.1	3970661	3972319	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	3970661..3972319	Alicycliphilus denitrificans BC	
ALIDE_RS18915	CDS	ALIDE_RS18915	NC_014910.1	3972349	3973737	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PLP-dependent aminotransferase family protein	complement(3972349..3973737)	Alicycliphilus denitrificans BC	
ALIDE_RS18920	CDS	ALIDE_RS18920	NC_014910.1	3973802	3975094	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylglutaryl-CoA reductase, degradative	3973802..3975094	Alicycliphilus denitrificans BC	
ALIDE_RS18925	CDS	ALIDE_RS18925	NC_014910.1	3975154	3975816	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAD family phosphatase	complement(3975154..3975816)	Alicycliphilus denitrificans BC	
ALIDE_RS18930	CDS	ALIDE_RS18930	NC_014910.1	3975813	3977852	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase	complement(3975813..3977852)	Alicycliphilus denitrificans BC	
ALIDE_RS18935	CDS	ALIDE_RS18935	NC_014910.1	3977958	3979469	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	3977958..3979469	Alicycliphilus denitrificans BC	
ALIDE_RS18940	CDS	ALIDE_RS18940	NC_014910.1	3979717	3980508	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	3979717..3980508	Alicycliphilus denitrificans BC	
ALIDE_RS18945	CDS	ALIDE_RS18945	NC_014910.1	3980511	3983495	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; EAL domain-containing protein	complement(3980511..3983495)	Alicycliphilus denitrificans BC	
ALIDE_RS18950	CDS	ALIDE_RS18950	NC_014910.1	3983604	3983999	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YchJ family metal-binding protein	complement(3983604..3983999)	Alicycliphilus denitrificans BC	
ALIDE_RS18955	CDS	ALIDE_RS18955	NC_014910.1	3983996	3984697	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4197 domain-containing protein	complement(3983996..3984697)	Alicycliphilus denitrificans BC	
ALIDE_RS18960	CDS	ALIDE_RS18960	NC_014910.1	3984791	3985285	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YetF domain-containing protein	3984791..3985285	Alicycliphilus denitrificans BC	
ALIDE_RS18965	CDS	ALIDE_RS18965	NC_014910.1	3985566	3986381	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	3985566..3986381	Alicycliphilus denitrificans BC	
ALIDE_RS18970	CDS	pepE	NC_014910.1	3986378	3987082	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; dipeptidase PepE	3986378..3987082	Alicycliphilus denitrificans BC	
ALIDE_RS18975	CDS	ALIDE_RS18975	NC_014910.1	3987095	3988015	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1177 domain-containing protein	3987095..3988015	Alicycliphilus denitrificans BC	
ALIDE_RS18980	CDS	ALIDE_RS18980	NC_014910.1	3988012	3988689	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AroM family protein	3988012..3988689	Alicycliphilus denitrificans BC	
ALIDE_RS18985	CDS	ALIDE_RS18985	NC_014910.1	3988724	3989704	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	3988724..3989704	Alicycliphilus denitrificans BC	
ALIDE_RS24950	CDS	ALIDE_RS24950	NC_014910.1	3989789	3990298	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(<3989789..3990298)	Alicycliphilus denitrificans BC	
ALIDE_RS24955	CDS	ALIDE_RS24955	NC_014910.1	3990268	3990510	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(3990268..3990510)	Alicycliphilus denitrificans BC	
ALIDE_RS18995	CDS	ALIDE_RS18995	NC_014910.1	3990588	3990932	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	3990588..>3990932	Alicycliphilus denitrificans BC	
ALIDE_RS19000	CDS	ALIDE_RS19000	NC_014910.1	3991034	3992164	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(3991034..3992164)	Alicycliphilus denitrificans BC	
ALIDE_RS19005	CDS	ALIDE_RS19005	NC_014910.1	3992188	3992856	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	complement(3992188..3992856)	Alicycliphilus denitrificans BC	
ALIDE_RS19010	CDS	ALIDE_RS19010	NC_014910.1	3992926	3994116	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA C-acyltransferase	complement(3992926..3994116)	Alicycliphilus denitrificans BC	
ALIDE_RS19015	CDS	aceK	NC_014910.1	3994113	3995939	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional isocitrate dehydrogenase kinase/phosphatase	complement(3994113..3995939)	Alicycliphilus denitrificans BC	
ALIDE_RS19020	CDS	can	NC_014910.1	3995992	3996657	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carbonate dehydratase	complement(3995992..3996657)	Alicycliphilus denitrificans BC	
ALIDE_RS19025	CDS	ALIDE_RS19025	NC_014910.1	3996711	3997901	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; isovaleryl-CoA dehydrogenase	complement(3996711..3997901)	Alicycliphilus denitrificans BC	
ALIDE_RS19030	CDS	ALIDE_RS19030	NC_014910.1	3998041	3998448	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family DNA-binding transcriptional regulator	complement(3998041..3998448)	Alicycliphilus denitrificans BC	
ALIDE_RS19060	CDS	ALIDE_RS19060	NC_014910.1	4004359	4006245	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding cassette domain-containing protein	4004359..4006245	Alicycliphilus denitrificans BC	
ALIDE_RS19065	CDS	ALIDE_RS19065	NC_014910.1	4006249	4007358	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis response regulator protein-glutamate methylesterase	complement(4006249..4007358)	Alicycliphilus denitrificans BC	
ALIDE_RS19070	CDS	cheD	NC_014910.1	4007405	4008142	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chemoreceptor glutamine deamidase CheD	complement(4007405..4008142)	Alicycliphilus denitrificans BC	
ALIDE_RS19075	CDS	ALIDE_RS19075	NC_014910.1	4008159	4009073	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CheR family methyltransferase	complement(4008159..4009073)	Alicycliphilus denitrificans BC	
ALIDE_RS19080	CDS	ALIDE_RS19080	NC_014910.1	4009073	4009555	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheW	complement(4009073..4009555)	Alicycliphilus denitrificans BC	
ALIDE_RS19085	CDS	ALIDE_RS19085	NC_014910.1	4009590	4011695	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheW	complement(4009590..4011695)	Alicycliphilus denitrificans BC	
ALIDE_RS19090	CDS	ALIDE_RS19090	NC_014910.1	4011752	4012114	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	complement(4011752..4012114)	Alicycliphilus denitrificans BC	
ALIDE_RS19095	CDS	ALIDE_RS19095	NC_014910.1	4012174	4012620	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4012174..4012620)	Alicycliphilus denitrificans BC	
ALIDE_RS19100	CDS	ALIDE_RS19100	NC_014910.1	4012694	4013815	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	4012694..4013815	Alicycliphilus denitrificans BC	
ALIDE_RS19105	CDS	ALIDE_RS19105	NC_014910.1	4013812	4014441	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	4013812..4014441	Alicycliphilus denitrificans BC	
ALIDE_RS19110	CDS	fliR	NC_014910.1	4014526	4015290	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthetic protein FliR	complement(4014526..4015290)	Alicycliphilus denitrificans BC	
ALIDE_RS19115	CDS	fliQ	NC_014910.1	4015287	4015556	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliQ	complement(4015287..4015556)	Alicycliphilus denitrificans BC	
ALIDE_RS19120	CDS	fliP	NC_014910.1	4015567	4016322	R	The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar type III secretion system pore protein FliP	complement(4015567..4016322)	Alicycliphilus denitrificans BC	
ALIDE_RS19125	CDS	ALIDE_RS19125	NC_014910.1	4016315	4016656	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthetic protein FliO	complement(4016315..4016656)	Alicycliphilus denitrificans BC	
ALIDE_RS19130	CDS	fliN	NC_014910.1	4016664	4017119	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliN	complement(4016664..4017119)	Alicycliphilus denitrificans BC	
ALIDE_RS19135	CDS	fliM	NC_014910.1	4017109	4018113	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliM	complement(4017109..4018113)	Alicycliphilus denitrificans BC	
ALIDE_RS19140	CDS	ALIDE_RS19140	NC_014910.1	4018120	4018695	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body-associated FliL family protein	complement(4018120..4018695)	Alicycliphilus denitrificans BC	
ALIDE_RS19145	CDS	ALIDE_RS19145	NC_014910.1	4018861	4020228	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-length control protein FliK	complement(4018861..4020228)	Alicycliphilus denitrificans BC	
ALIDE_RS19150	CDS	fliJ	NC_014910.1	4020231	4020695	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar export protein FliJ	complement(4020231..4020695)	Alicycliphilus denitrificans BC	
ALIDE_RS19155	CDS	fliI	NC_014910.1	4020747	4022150	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar protein export ATPase FliI	complement(4020747..4022150)	Alicycliphilus denitrificans BC	
ALIDE_RS19160	CDS	ALIDE_RS19160	NC_014910.1	4022140	4022865	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar assembly protein FliH	complement(4022140..4022865)	Alicycliphilus denitrificans BC	
ALIDE_RS19165	CDS	fliG	NC_014910.1	4022887	4023882	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliG	complement(4022887..4023882)	Alicycliphilus denitrificans BC	
ALIDE_RS19170	CDS	fliF	NC_014910.1	4023913	4025607	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal-body MS-ring/collar protein FliF	complement(4023913..4025607)	Alicycliphilus denitrificans BC	
ALIDE_RS19175	CDS	fliE	NC_014910.1	4025783	4026094	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-basal body complex protein FliE	4025783..4026094	Alicycliphilus denitrificans BC	
ALIDE_RS19180	CDS	ALIDE_RS19180	NC_014910.1	4026310	4026609	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar protein FliT	complement(4026310..4026609)	Alicycliphilus denitrificans BC	
ALIDE_RS19185	CDS	fliS	NC_014910.1	4026613	4027053	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar export chaperone FliS	complement(4026613..4027053)	Alicycliphilus denitrificans BC	
ALIDE_RS19190	CDS	fliD	NC_014910.1	4027120	4028565	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar filament capping protein FliD	complement(4027120..4028565)	Alicycliphilus denitrificans BC	
ALIDE_RS19195	CDS	ALIDE_RS19195	NC_014910.1	4028798	4030258	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellin	complement(4028798..4030258)	Alicycliphilus denitrificans BC	
ALIDE_RS19200	CDS	ALIDE_RS19200	NC_014910.1	4030593	4032062	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellin	4030593..4032062	Alicycliphilus denitrificans BC	
ALIDE_RS19205	CDS	ALIDE_RS19205	NC_014910.1	4032224	4037233	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycoside hydrolase family 99-like domain-containing protein	complement(4032224..4037233)	Alicycliphilus denitrificans BC	
ALIDE_RS23615	CDS	ALIDE_RS23615	NC_014910.1	4037233	4038522	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethylmenaquinone methyltransferase	complement(4037233..4038522)	Alicycliphilus denitrificans BC	
ALIDE_RS19210	CDS	motA	NC_014910.1	4039117	4039977	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor stator protein MotA	4039117..4039977	Alicycliphilus denitrificans BC	
ALIDE_RS19215	CDS	motB	NC_014910.1	4039996	4040934	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor protein MotB	4039996..4040934	Alicycliphilus denitrificans BC	
ALIDE_RS19220	CDS	cheY	NC_014910.1	4041000	4041386	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis response regulator CheY	4041000..4041386	Alicycliphilus denitrificans BC	
ALIDE_RS19225	CDS	ALIDE_RS19225	NC_014910.1	4041389	4042021	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein phosphatase CheZ	4041389..4042021	Alicycliphilus denitrificans BC	
ALIDE_RS19230	CDS	ALIDE_RS19230	NC_014910.1	4042118	4043278	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; EscU/YscU/HrcU family type III secretion system export apparatus switch protein	4042118..4043278	Alicycliphilus denitrificans BC	
ALIDE_RS19235	CDS	flhA	NC_014910.1	4043275	4045365	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhA	4043275..4045365	Alicycliphilus denitrificans BC	
ALIDE_RS19240	CDS	flhF	NC_014910.1	4045362	4046924	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhF	4045362..4046924	Alicycliphilus denitrificans BC	
ALIDE_RS19245	CDS	ALIDE_RS19245	NC_014910.1	4046914	4047717	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4046914..4047717	Alicycliphilus denitrificans BC	
ALIDE_RS19250	CDS	ALIDE_RS19250	NC_014910.1	4047723	4048439	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor FliA	4047723..4048439	Alicycliphilus denitrificans BC	
ALIDE_RS19255	CDS	ALIDE_RS19255	NC_014910.1	4048569	4048907	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4048569..4048907)	Alicycliphilus denitrificans BC	
ALIDE_RS19260	CDS	flgM	NC_014910.1	4048943	4049266	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis anti-sigma factor FlgM	complement(4048943..4049266)	Alicycliphilus denitrificans BC	
ALIDE_RS19265	CDS	flgA	NC_014910.1	4049360	4050106	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring formation chaperone FlgA	complement(4049360..4050106)	Alicycliphilus denitrificans BC	
ALIDE_RS19270	CDS	flgB	NC_014910.1	4050289	4050705	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgB	4050289..4050705	Alicycliphilus denitrificans BC	
ALIDE_RS19275	CDS	flgC	NC_014910.1	4050717	4051121	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgC	4050717..4051121	Alicycliphilus denitrificans BC	
ALIDE_RS19280	CDS	ALIDE_RS19280	NC_014910.1	4051137	4051799	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook capping FlgD N-terminal domain-containing protein	4051137..4051799	Alicycliphilus denitrificans BC	
ALIDE_RS19285	CDS	flgE	NC_014910.1	4051836	4053116	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook protein FlgE	4051836..4053116	Alicycliphilus denitrificans BC	
ALIDE_RS19290	CDS	flgF	NC_014910.1	4053142	4053882	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal-body rod protein FlgF	4053142..4053882	Alicycliphilus denitrificans BC	
ALIDE_RS19295	CDS	flgG	NC_014910.1	4053907	4054689	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal-body rod protein FlgG	4053907..4054689	Alicycliphilus denitrificans BC	
ALIDE_RS19300	CDS	ALIDE_RS19300	NC_014910.1	4054704	4055387	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body L-ring protein FlgH	4054704..4055387	Alicycliphilus denitrificans BC	
ALIDE_RS19305	CDS	ALIDE_RS19305	NC_014910.1	4055582	4056727	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring protein FlgI	4055582..4056727	Alicycliphilus denitrificans BC	
ALIDE_RS19310	CDS	flgJ	NC_014910.1	4056727	4057665	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar assembly peptidoglycan hydrolase FlgJ	4056727..4057665	Alicycliphilus denitrificans BC	
ALIDE_RS19315	CDS	flgK	NC_014910.1	4057677	4059659	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-associated protein FlgK	4057677..4059659	Alicycliphilus denitrificans BC	
ALIDE_RS19320	CDS	flgL	NC_014910.1	4059661	4060911	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-associated protein FlgL	4059661..4060911	Alicycliphilus denitrificans BC	
ALIDE_RS19325	CDS	ALIDE_RS19325	NC_014910.1	4060988	4062202	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HDOD domain-containing protein	4060988..4062202	Alicycliphilus denitrificans BC	
ALIDE_RS19330	CDS	ALIDE_RS19330	NC_014910.1	4062348	4063334	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitronate monooxygenase	4062348..>4063334	Alicycliphilus denitrificans BC	
ALIDE_RS19335	CDS	ALIDE_RS19335	NC_014910.1	4063388	4064827	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PLP-dependent aminotransferase family protein	complement(4063388..4064827)	Alicycliphilus denitrificans BC	
ALIDE_RS19340	CDS	ALIDE_RS19340	NC_014910.1	4064947	4065546	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysE family translocator	4064947..4065546	Alicycliphilus denitrificans BC	
ALIDE_RS19345	CDS	ALIDE_RS19345	NC_014910.1	4065543	4066475	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	4065543..4066475	Alicycliphilus denitrificans BC	
ALIDE_RS19350	CDS	ALIDE_RS19350	NC_014910.1	4066591	4067772	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PLP-dependent aminotransferase family protein	4066591..4067772	Alicycliphilus denitrificans BC	
ALIDE_RS19355	CDS	ALIDE_RS19355	NC_014910.1	4067787	4068662	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PhzF family phenazine biosynthesis protein	4067787..4068662	Alicycliphilus denitrificans BC	
ALIDE_RS19360	CDS	ALIDE_RS19360	NC_014910.1	4068659	4069633	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine dehydratase	4068659..4069633	Alicycliphilus denitrificans BC	
ALIDE_RS19365	CDS	ALIDE_RS19365	NC_014910.1	4069830	4070918	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclase family protein	4069830..4070918	Alicycliphilus denitrificans BC	
ALIDE_RS19370	CDS	ALIDE_RS19370	NC_014910.1	4070944	4072185	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	4070944..4072185	Alicycliphilus denitrificans BC	
ALIDE_RS19375	CDS	ALIDE_RS19375	NC_014910.1	4072182	4073309	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	4072182..4073309	Alicycliphilus denitrificans BC	
ALIDE_RS19380	CDS	ALIDE_RS19380	NC_014910.1	4073381	4074052	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine phosphatase family protein	4073381..4074052	Alicycliphilus denitrificans BC	
ALIDE_RS19385	CDS	ALIDE_RS19385	NC_014910.1	4074043	4075233	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase	complement(4074043..4075233)	Alicycliphilus denitrificans BC	
ALIDE_RS19390	CDS	ALIDE_RS19390	NC_014910.1	4075309	4075812	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1775 domain-containing protein	complement(4075309..4075812)	Alicycliphilus denitrificans BC	
ALIDE_RS19395	CDS	ALIDE_RS19395	NC_014910.1	4075836	4078154	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor	complement(4075836..4078154)	Alicycliphilus denitrificans BC	
ALIDE_RS19400	CDS	ALIDE_RS19400	NC_014910.1	4078315	4078662	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2946 family protein	complement(4078315..4078662)	Alicycliphilus denitrificans BC	
ALIDE_RS19405	CDS	ALIDE_RS19405	NC_014910.1	4078758	4079615	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; creatininase family protein	complement(4078758..4079615)	Alicycliphilus denitrificans BC	
ALIDE_RS19410	CDS	ALIDE_RS19410	NC_014910.1	4079632	4080612	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(4079632..4080612)	Alicycliphilus denitrificans BC	
ALIDE_RS19415	CDS	ALIDE_RS19415	NC_014910.1	4080893	4082995	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-disulfide reductase DsbD domain-containing protein	4080893..4082995	Alicycliphilus denitrificans BC	
ALIDE_RS19420	CDS	ALIDE_RS19420	NC_014910.1	4083095	4083628	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; redoxin domain-containing protein	4083095..4083628	Alicycliphilus denitrificans BC	
ALIDE_RS19425	CDS	ALIDE_RS19425	NC_014910.1	4083665	4084411	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite exporter TauE/SafE family protein	complement(4083665..4084411)	Alicycliphilus denitrificans BC	
ALIDE_RS19430	CDS	ALIDE_RS19430	NC_014910.1	4084675	4085703	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-binding protein	4084675..4085703	Alicycliphilus denitrificans BC	
ALIDE_RS19435	CDS	hemE	NC_014910.1	4085746	4086864	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen decarboxylase	4085746..4086864	Alicycliphilus denitrificans BC	
ALIDE_RS19440	CDS	priA	NC_014910.1	4087481	4089589	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal protein N'	4087481..4089589	Alicycliphilus denitrificans BC	
ALIDE_RS19445	CDS	ALIDE_RS19445	NC_014910.1	4089652	4090839	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA C-acyltransferase family protein	complement(4089652..4090839)	Alicycliphilus denitrificans BC	
ALIDE_RS19450	CDS	ALIDE_RS19450	NC_014910.1	4090851	4091630	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase-related protein	complement(4090851..4091630)	Alicycliphilus denitrificans BC	
ALIDE_RS19455	CDS	ALIDE_RS19455	NC_014910.1	4091692	4093116	R	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(4091692..>4093116)	Alicycliphilus denitrificans BC	
ALIDE_RS19460	CDS	ALIDE_RS19460	NC_014910.1	4093267	4094355	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS5-like element ISDisp1 family transposase	complement(4093267..4094355)	Alicycliphilus denitrificans BC	
ALIDE_RS19465	CDS	ALIDE_RS19465	NC_014910.1	4094439	4094816	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(<4094439..4094816)	Alicycliphilus denitrificans BC	
ALIDE_RS19470	CDS	ALIDE_RS19470	NC_014910.1	4094813	4095634	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(4094813..4095634)	Alicycliphilus denitrificans BC	
ALIDE_RS19475	CDS	ALIDE_RS19475	NC_014910.1	4095643	4096824	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(4095643..4096824)	Alicycliphilus denitrificans BC	
ALIDE_RS19480	CDS	ALIDE_RS19480	NC_014910.1	4096836	4097873	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	complement(4096836..4097873)	Alicycliphilus denitrificans BC	
ALIDE_RS19485	CDS	ALIDE_RS19485	NC_014910.1	4097873	4098751	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	complement(4097873..4098751)	Alicycliphilus denitrificans BC	
ALIDE_RS19490	CDS	ALIDE_RS19490	NC_014910.1	4098751	4099605	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	complement(4098751..4099605)	Alicycliphilus denitrificans BC	
ALIDE_RS19495	CDS	ALIDE_RS19495	NC_014910.1	4099739	4100446	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	4099739..4100446	Alicycliphilus denitrificans BC	
ALIDE_RS19500	CDS	ALIDE_RS19500	NC_014910.1	4100441	4101391	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AEC family transporter	complement(4100441..4101391)	Alicycliphilus denitrificans BC	
ALIDE_RS19505	CDS	ALIDE_RS19505	NC_014910.1	4101548	4103608	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; UvrD-helicase domain-containing protein	4101548..4103608	Alicycliphilus denitrificans BC	
ALIDE_RS19510	CDS	ALIDE_RS19510	NC_014910.1	4103710	4104039	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4103710..4104039	Alicycliphilus denitrificans BC	
ALIDE_RS19515	CDS	ALIDE_RS19515	NC_014910.1	4104036	4105205	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipase A	4104036..4105205	Alicycliphilus denitrificans BC	
ALIDE_RS19520	CDS	ALIDE_RS19520	NC_014910.1	4105218	4106345	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; formylglycine-generating enzyme family protein	complement(4105218..4106345)	Alicycliphilus denitrificans BC	
ALIDE_RS19525	CDS	ALIDE_RS19525	NC_014910.1	4106377	4108176	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfatase	complement(4106377..4108176)	Alicycliphilus denitrificans BC	
ALIDE_RS19530	CDS	ALIDE_RS19530	NC_014910.1	4108274	4109215	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	complement(4108274..4109215)	Alicycliphilus denitrificans BC	
ALIDE_RS19535	CDS	ALIDE_RS19535	NC_014910.1	4109245	4111008	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent monooxygenase	complement(4109245..4111008)	Alicycliphilus denitrificans BC	
ALIDE_RS19540	CDS	ALIDE_RS19540	NC_014910.1	4111048	4111896	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarylacetoacetate hydrolase family protein	complement(4111048..4111896)	Alicycliphilus denitrificans BC	
ALIDE_RS19545	CDS	ALIDE_RS19545	NC_014910.1	4111969	4113111	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; porin	complement(4111969..4113111)	Alicycliphilus denitrificans BC	
ALIDE_RS19550	CDS	ALIDE_RS19550	NC_014910.1	4113310	4114008	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FCD domain-containing protein	4113310..4114008	Alicycliphilus denitrificans BC	
ALIDE_RS19555	CDS	ALIDE_RS19555	NC_014910.1	4114254	4114640	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4114254..4114640	Alicycliphilus denitrificans BC	
ALIDE_RS19560	CDS	ALIDE_RS19560	NC_014910.1	4114718	4115194	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein	complement(4114718..4115194)	Alicycliphilus denitrificans BC	
ALIDE_RS19565	CDS	tgt	NC_014910.1	4115254	4116426	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA guanosine(34) transglycosylase Tgt	4115254..4116426	Alicycliphilus denitrificans BC	
ALIDE_RS19570	CDS	ALIDE_RS19570	NC_014910.1	4116431	4117474	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc ribbon domain-containing protein	complement(4116431..4117474)	Alicycliphilus denitrificans BC	
ALIDE_RS19575	CDS	ALIDE_RS19575	NC_014910.1	4117597	4118010	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PAS domain S-box protein	4117597..4118010	Alicycliphilus denitrificans BC	
ALIDE_RS19580	CDS	ALIDE_RS19580	NC_014910.1	4118428	4119285	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)-binding domain-containing protein	4118428..4119285	Alicycliphilus denitrificans BC	
ALIDE_RS19585	CDS	ALIDE_RS19585	NC_014910.1	4119335	4120303	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	4119335..4120303	Alicycliphilus denitrificans BC	
ALIDE_RS19590	CDS	ALIDE_RS19590	NC_014910.1	4120422	4121402	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	4120422..4121402	Alicycliphilus denitrificans BC	
ALIDE_RS19595	CDS	ALIDE_RS19595	NC_014910.1	4121456	4122130	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RraA family protein	4121456..4122130	Alicycliphilus denitrificans BC	
ALIDE_RS19600	CDS	ALIDE_RS19600	NC_014910.1	4122099	4122794	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator	complement(4122099..4122794)	Alicycliphilus denitrificans BC	
ALIDE_RS19605	CDS	ALIDE_RS19605	NC_014910.1	4122814	4124757	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	complement(4122814..4124757)	Alicycliphilus denitrificans BC	
ALIDE_RS19610	CDS	ftsH	NC_014910.1	4124947	4126827	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent zinc metalloprotease FtsH	4124947..4126827	Alicycliphilus denitrificans BC	
ALIDE_RS19615	CDS	ALIDE_RS19615	NC_014910.1	4126916	4127482	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosyltransferase family protein	4126916..4127482	Alicycliphilus denitrificans BC	
ALIDE_RS19620	CDS	ALIDE_RS19620	NC_014910.1	4127479	4128123	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosyltransferase family protein	4127479..4128123	Alicycliphilus denitrificans BC	
ALIDE_RS19625	CDS	ALIDE_RS19625	NC_014910.1	4128125	4128775	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta family hydrolase	complement(4128125..4128775)	Alicycliphilus denitrificans BC	
ALIDE_RS19630	CDS	ALIDE_RS19630	NC_014910.1	4128783	4129766	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-dependent alcohol dehydrogenase family protein	complement(4128783..4129766)	Alicycliphilus denitrificans BC	
ALIDE_RS19635	CDS	ALIDE_RS19635	NC_014910.1	4129981	4130970	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	4129981..4130970	Alicycliphilus denitrificans BC	
ALIDE_RS19640	CDS	ALIDE_RS19640	NC_014910.1	4130993	4132459	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)/FAD-dependent oxidoreductase	4130993..4132459	Alicycliphilus denitrificans BC	
ALIDE_RS23620	CDS	ALIDE_RS23620	NC_014910.1	4132456	4133562	D	This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxidase-related enzyme	4132456..4133562	Alicycliphilus denitrificans BC	
ALIDE_RS19650	CDS	ALIDE_RS19650	NC_014910.1	4133622	4134872	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FIST N-terminal domain-containing protein	complement(4133622..4134872)	Alicycliphilus denitrificans BC	
ALIDE_RS19655	CDS	ALIDE_RS19655	NC_014910.1	4134897	4135679	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PhaM family polyhydroxyalkanoate granule multifunctional regulatory protein	complement(4134897..4135679)	Alicycliphilus denitrificans BC	
ALIDE_RS19660	CDS	ALIDE_RS19660	NC_014910.1	4135907	4136338	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HU family DNA-binding protein	4135907..4136338	Alicycliphilus denitrificans BC	
ALIDE_RS19665	CDS	ALIDE_RS19665	NC_014910.1	4136396	4137148	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine-protein phosphatase	complement(4136396..4137148)	Alicycliphilus denitrificans BC	
ALIDE_RS19675	CDS	rplQ	NC_014910.1	4137342	4137731	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L17	complement(4137342..4137731)	Alicycliphilus denitrificans BC	
ALIDE_RS19680	CDS	rpoA	NC_014910.1	4137820	4138815	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit alpha	complement(4137820..4138815)	Alicycliphilus denitrificans BC	
ALIDE_RS19685	CDS	rpsD	NC_014910.1	4138928	4139551	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S4	complement(4138928..4139551)	Alicycliphilus denitrificans BC	
ALIDE_RS19690	CDS	rpsK	NC_014910.1	4139643	4140047	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S11	complement(4139643..4140047)	Alicycliphilus denitrificans BC	
ALIDE_RS19695	CDS	rpsM	NC_014910.1	4140063	4140428	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S13	complement(4140063..4140428)	Alicycliphilus denitrificans BC	
ALIDE_RS19700	CDS	rpmJ	NC_014910.1	4140452	4140565	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L36	complement(4140452..4140565)	Alicycliphilus denitrificans BC	
ALIDE_RS19705	CDS	secY	NC_014910.1	4140713	4142032	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecY	complement(4140713..4142032)	Alicycliphilus denitrificans BC	
ALIDE_RS19710	CDS	rplO	NC_014910.1	4142056	4142487	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L15	complement(4142056..4142487)	Alicycliphilus denitrificans BC	
ALIDE_RS19715	CDS	rpmD	NC_014910.1	4142498	4142680	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L30	complement(4142498..4142680)	Alicycliphilus denitrificans BC	
ALIDE_RS19720	CDS	rpsE	NC_014910.1	4142693	4143214	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S5	complement(4142693..4143214)	Alicycliphilus denitrificans BC	
ALIDE_RS19725	CDS	rplR	NC_014910.1	4143230	4143595	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L18	complement(4143230..4143595)	Alicycliphilus denitrificans BC	
ALIDE_RS19730	CDS	rplF	NC_014910.1	4143607	4144140	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L6	complement(4143607..4144140)	Alicycliphilus denitrificans BC	
ALIDE_RS19735	CDS	rpsH	NC_014910.1	4144165	4144560	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S8	complement(4144165..4144560)	Alicycliphilus denitrificans BC	
ALIDE_RS19740	CDS	rpsN	NC_014910.1	4144582	4144887	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S14	complement(4144582..4144887)	Alicycliphilus denitrificans BC	
ALIDE_RS19745	CDS	rplE	NC_014910.1	4144897	4145436	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L5	complement(4144897..4145436)	Alicycliphilus denitrificans BC	
ALIDE_RS19750	CDS	rplX	NC_014910.1	4145446	4145766	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L24	complement(4145446..4145766)	Alicycliphilus denitrificans BC	
ALIDE_RS19755	CDS	rplN	NC_014910.1	4145777	4146145	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L14	complement(4145777..4146145)	Alicycliphilus denitrificans BC	
ALIDE_RS19760	CDS	ALIDE_RS19760	NC_014910.1	4146353	4147951	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate dehydrogenase/oxidase	complement(4146353..4147951)	Alicycliphilus denitrificans BC	
ALIDE_RS19765	CDS	ALIDE_RS19765	NC_014910.1	4148074	4148835	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR/GlpR family DNA-binding transcription regulator	4148074..4148835	Alicycliphilus denitrificans BC	
ALIDE_RS19770	CDS	glpK	NC_014910.1	4148858	4150363	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol kinase GlpK	4148858..4150363	Alicycliphilus denitrificans BC	
ALIDE_RS19775	CDS	proC	NC_014910.1	4150520	4151359	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrroline-5-carboxylate reductase	4150520..4151359	Alicycliphilus denitrificans BC	
ALIDE_RS19780	CDS	ALIDE_RS19780	NC_014910.1	4151459	4153243	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CotH kinase family protein	4151459..4153243	Alicycliphilus denitrificans BC	
ALIDE_RS19785	CDS	ubiA	NC_014910.1	4153322	4154194	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybenzoate octaprenyltransferase	complement(4153322..4154194)	Alicycliphilus denitrificans BC	
ALIDE_RS19790	CDS	ALIDE_RS19790	NC_014910.1	4154282	4154785	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Dps family protein	complement(4154282..4154785)	Alicycliphilus denitrificans BC	
ALIDE_RS19795	CDS	ALIDE_RS19795	NC_014910.1	4154945	4155910	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(4154945..4155910)	Alicycliphilus denitrificans BC	
ALIDE_RS19800	CDS	recG	NC_014910.1	4155956	4158073	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecG	complement(4155956..4158073)	Alicycliphilus denitrificans BC	
ALIDE_RS19805	CDS	ALIDE_RS19805	NC_014910.1	4158250	4159515	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HD-GYP domain-containing protein	4158250..4159515	Alicycliphilus denitrificans BC	
ALIDE_RS19810	CDS	queA	NC_014910.1	4159604	4160707	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	4159604..4160707	Alicycliphilus denitrificans BC	
ALIDE_RS19815	CDS	ALIDE_RS19815	NC_014910.1	4160855	4161736	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	4160855..4161736	Alicycliphilus denitrificans BC	
ALIDE_RS19820	CDS	ALIDE_RS19820	NC_014910.1	4161795	4163402	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyltransferase family protein	complement(4161795..4163402)	Alicycliphilus denitrificans BC	
ALIDE_RS19825	CDS	ALIDE_RS19825	NC_014910.1	4163408	4164370	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(4163408..4164370)	Alicycliphilus denitrificans BC	
ALIDE_RS19830	CDS	ALIDE_RS19830	NC_014910.1	4164497	4165402	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	4164497..4165402	Alicycliphilus denitrificans BC	
ALIDE_RS19835	CDS	ALIDE_RS19835	NC_014910.1	4165411	4166127	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil-DNA glycosylase	complement(4165411..4166127)	Alicycliphilus denitrificans BC	
ALIDE_RS19840	CDS	trpC	NC_014910.1	4166188	4166988	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; indole-3-glycerol phosphate synthase TrpC	complement(4166188..4166988)	Alicycliphilus denitrificans BC	
ALIDE_RS24635	CDS	ALIDE_RS24635	NC_014910.1	4166995	4167147	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4166995..4167147)	Alicycliphilus denitrificans BC	
ALIDE_RS19845	CDS	trpD	NC_014910.1	4167144	4168175	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate phosphoribosyltransferase	complement(4167144..4168175)	Alicycliphilus denitrificans BC	
ALIDE_RS19850	CDS	ALIDE_RS19850	NC_014910.1	4168175	4168744	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminodeoxychorismate/anthranilate synthase component II	complement(4168175..4168744)	Alicycliphilus denitrificans BC	
ALIDE_RS19855	CDS	ALIDE_RS19855	NC_014910.1	4169867	4170613	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4169867..4170613	Alicycliphilus denitrificans BC	
ALIDE_RS19860	CDS	ALIDE_RS19860	NC_014910.1	4170733	4170945	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AlpA family transcriptional regulator	4170733..4170945	Alicycliphilus denitrificans BC	
ALIDE_RS19865	CDS	ALIDE_RS19865	NC_014910.1	4170988	4171863	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParA family protein	4170988..4171863	Alicycliphilus denitrificans BC	
ALIDE_RS19870	CDS	ALIDE_RS19870	NC_014910.1	4171847	4172116	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4171847..4172116	Alicycliphilus denitrificans BC	
ALIDE_RS19875	CDS	ALIDE_RS19875	NC_014910.1	4172109	4173782	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParB family protein	4172109..4173782	Alicycliphilus denitrificans BC	
ALIDE_RS19880	CDS	ALIDE_RS19880	NC_014910.1	4173797	4174357	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2857 domain-containing protein	4173797..4174357	Alicycliphilus denitrificans BC	
ALIDE_RS19885	CDS	ALIDE_RS19885	NC_014910.1	4174361	4175593	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; STY4528 family pathogenicity island replication protein	4174361..4175593	Alicycliphilus denitrificans BC	
ALIDE_RS19890	CDS	ALIDE_RS19890	NC_014910.1	4176013	4176807	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03761 family integrating conjugative element protein	4176013..4176807	Alicycliphilus denitrificans BC	
ALIDE_RS19895	CDS	ALIDE_RS19895	NC_014910.1	4176804	4177331	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3158 family protein	4176804..4177331	Alicycliphilus denitrificans BC	
ALIDE_RS19900	CDS	ALIDE_RS19900	NC_014910.1	4177405	4177857	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein	4177405..4177857	Alicycliphilus denitrificans BC	
ALIDE_RS19905	CDS	ALIDE_RS19905	NC_014910.1	4178134	4179243	D	frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase	4178134..>4179243	Alicycliphilus denitrificans BC	
ALIDE_RS19910	CDS	istB	NC_014910.1	4179316	4180119	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21-like element ISThsp10 family helper ATPase IstB	complement(4179316..4180119)	Alicycliphilus denitrificans BC	
ALIDE_RS19915	CDS	istA	NC_014910.1	4180109	4181635	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21 family transposase	complement(4180109..4181635)	Alicycliphilus denitrificans BC	
ALIDE_RS19920	CDS	ALIDE_RS19920	NC_014910.1	4181744	4182091	D	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	<4181744..4182091	Alicycliphilus denitrificans BC	
ALIDE_RS19925	CDS	ALIDE_RS19925	NC_014910.1	4182117	4183265	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF6094 domain-containing protein	4182117..4183265	Alicycliphilus denitrificans BC	
ALIDE_RS19930	CDS	ALIDE_RS19930	NC_014910.1	4183315	4183635	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4183315..4183635	Alicycliphilus denitrificans BC	
ALIDE_RS19935	CDS	ALIDE_RS19935	NC_014910.1	4183725	4184030	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4183725..4184030	Alicycliphilus denitrificans BC	
ALIDE_RS19940	CDS	ALIDE_RS19940	NC_014910.1	4184163	4186442	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helicase-related protein	4184163..4186442	Alicycliphilus denitrificans BC	
ALIDE_RS19945	CDS	ALIDE_RS19945	NC_014910.1	4186580	4187179	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PilL N-terminal domain-containing protein	4186580..4187179	Alicycliphilus denitrificans BC	
ALIDE_RS19950	CDS	ALIDE_RS19950	NC_014910.1	4187176	4187820	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4187176..4187820	Alicycliphilus denitrificans BC	
ALIDE_RS19955	CDS	ALIDE_RS19955	NC_014910.1	4187835	4188560	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03759 family integrating conjugative element protein	4187835..4188560	Alicycliphilus denitrificans BC	
ALIDE_RS19960	CDS	ALIDE_RS19960	NC_014910.1	4188542	4189144	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transglycosylase SLT domain-containing protein	4188542..4189144	Alicycliphilus denitrificans BC	
ALIDE_RS19965	CDS	ALIDE_RS19965	NC_014910.1	4189141	4189689	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; integrating conjugative element protein	4189141..4189689	Alicycliphilus denitrificans BC	
ALIDE_RS19970	CDS	traD	NC_014910.1	4189694	4191886	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV conjugative transfer system coupling protein TraD	4189694..4191886	Alicycliphilus denitrificans BC	
ALIDE_RS19975	CDS	ALIDE_RS19975	NC_014910.1	4191883	4192644	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03747 family integrating conjugative element membrane protein	4191883..4192644	Alicycliphilus denitrificans BC	
ALIDE_RS19980	CDS	ALIDE_RS19980	NC_014910.1	4192743	4193126	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RAQPRD family integrative conjugative element protein	4192743..4193126	Alicycliphilus denitrificans BC	
ALIDE_RS19985	CDS	ALIDE_RS19985	NC_014910.1	4193123	4193356	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03758 family integrating conjugative element protein	4193123..4193356	Alicycliphilus denitrificans BC	
ALIDE_RS19990	CDS	ALIDE_RS19990	NC_014910.1	4193373	4193732	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03745 family integrating conjugative element membrane protein	4193373..4193732	Alicycliphilus denitrificans BC	
ALIDE_RS19995	CDS	ALIDE_RS19995	NC_014910.1	4193744	4194154	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03750 family conjugal transfer protein	4193744..4194154	Alicycliphilus denitrificans BC	
ALIDE_RS20000	CDS	ALIDE_RS20000	NC_014910.1	4194151	4194843	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03746 family integrating conjugative element protein	4194151..4194843	Alicycliphilus denitrificans BC	
ALIDE_RS20005	CDS	ALIDE_RS20005	NC_014910.1	4194840	4195754	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03749 family integrating conjugative element protein	4194840..4195754	Alicycliphilus denitrificans BC	
ALIDE_RS20010	CDS	ALIDE_RS20010	NC_014910.1	4195744	4197162	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03752 family integrating conjugative element protein	4195744..4197162	Alicycliphilus denitrificans BC	
ALIDE_RS20015	CDS	ALIDE_RS20015	NC_014910.1	4197143	4197592	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03751 family conjugal transfer lipoprotein	4197143..4197592	Alicycliphilus denitrificans BC	
ALIDE_RS20020	CDS	ALIDE_RS20020	NC_014910.1	4197592	4200474	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugative transfer ATPase	4197592..4200474	Alicycliphilus denitrificans BC	
ALIDE_RS20025	CDS	ALIDE_RS20025	NC_014910.1	4200499	4201263	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin domain-containing protein	4200499..4201263	Alicycliphilus denitrificans BC	
ALIDE_RS20030	CDS	ALIDE_RS20030	NC_014910.1	4201440	4201934	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; JAB domain-containing protein	4201440..4201934	Alicycliphilus denitrificans BC	
ALIDE_RS20035	CDS	ALIDE_RS20035	NC_014910.1	4202098	4202544	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03757 family integrating conjugative element protein	4202098..4202544	Alicycliphilus denitrificans BC	
ALIDE_RS20040	CDS	ALIDE_RS20040	NC_014910.1	4202541	4203488	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TIGR03756 family integrating conjugative element protein	4202541..4203488	Alicycliphilus denitrificans BC	
ALIDE_RS20045	CDS	ALIDE_RS20045	NC_014910.1	4203499	4204893	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; integrating conjugative element protein	4203499..4204893	Alicycliphilus denitrificans BC	
ALIDE_RS20050	CDS	ALIDE_RS20050	NC_014910.1	4204890	4205237	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4204890..4205237	Alicycliphilus denitrificans BC	
ALIDE_RS20055	CDS	ALIDE_RS20055	NC_014910.1	4205253	4206776	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TraG N-terminal domain-containing protein	4205253..4206776	Alicycliphilus denitrificans BC	
ALIDE_RS20060	CDS	ALIDE_RS20060	NC_014910.1	4206783	4207142	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3742 family protein	complement(4206783..4207142)	Alicycliphilus denitrificans BC	
ALIDE_RS20065	CDS	ALIDE_RS20065	NC_014910.1	4207227	4207859	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RES family NAD+ phosphorylase	complement(4207227..4207859)	Alicycliphilus denitrificans BC	
ALIDE_RS20070	CDS	ALIDE_RS20070	NC_014910.1	4207872	4208498	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4207872..4208498)	Alicycliphilus denitrificans BC	
ALIDE_RS20075	CDS	mobH	NC_014910.1	4208814	4210676	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MobH family relaxase	4208814..4210676	Alicycliphilus denitrificans BC	
ALIDE_RS20080	CDS	ALIDE_RS20080	NC_014910.1	4210727	4211209	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AAA family ATPase	complement(4210727..4211209)	Alicycliphilus denitrificans BC	
ALIDE_RS20085	CDS	ALIDE_RS20085	NC_014910.1	4211257	4211496	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4211257..4211496)	Alicycliphilus denitrificans BC	
ALIDE_RS23910	CDS	ALIDE_RS23910	NC_014910.1	4211559	4211738	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase	complement(<4211559..4211738)	Alicycliphilus denitrificans BC	
ALIDE_RS20090	CDS	ALIDE_RS20090	NC_014910.1	4211785	4213725	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta fold hydrolase	complement(4211785..4213725)	Alicycliphilus denitrificans BC	
ALIDE_RS20095	CDS	ALIDE_RS20095	NC_014910.1	4213722	4214756	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4105 domain-containing protein	complement(4213722..4214756)	Alicycliphilus denitrificans BC	
ALIDE_RS23635	CDS	ALIDE_RS23635	NC_014910.1	4214765	4214914	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(4214765..4214914)	Alicycliphilus denitrificans BC	
ALIDE_RS20100	CDS	istA	NC_014910.1	4215033	4216559	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21 family transposase	4215033..4216559	Alicycliphilus denitrificans BC	
ALIDE_RS20105	CDS	istB	NC_014910.1	4216549	4217352	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21-like element ISThsp10 family helper ATPase IstB	4216549..4217352	Alicycliphilus denitrificans BC	
ALIDE_RS24830	CDS	ALIDE_RS24830	NC_014910.1	4217422	4217520	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase	complement(<4217422..4217520)	Alicycliphilus denitrificans BC	
ALIDE_RS23645	CDS	ALIDE_RS23645	NC_014910.1	4217695	4218048	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	4217695..4218048	Alicycliphilus denitrificans BC	
ALIDE_RS20115	CDS	ALIDE_RS20115	NC_014910.1	4218240	4219187	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(4218240..4219187)	Alicycliphilus denitrificans BC	
ALIDE_RS20120	CDS	ALIDE_RS20120	NC_014910.1	4219175	4219723	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RES family NAD+ phosphorylase	complement(4219175..4219723)	Alicycliphilus denitrificans BC	
ALIDE_RS20125	CDS	ALIDE_RS20125	NC_014910.1	4219720	4220091	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein	complement(4219720..4220091)	Alicycliphilus denitrificans BC	
ALIDE_RS20130	CDS	ALIDE_RS20130	NC_014910.1	4220406	4220735	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate mutase	complement(4220406..4220735)	Alicycliphilus denitrificans BC	
ALIDE_RS20135	CDS	trpE	NC_014910.1	4220732	4222231	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate synthase component I	complement(4220732..4222231)	Alicycliphilus denitrificans BC	
ALIDE_RS20140	CDS	ALIDE_RS20140	NC_014910.1	4222574	4224334	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	4222574..4224334	Alicycliphilus denitrificans BC	
ALIDE_RS20145	CDS	ALIDE_RS20145	NC_014910.1	4224497	4227262	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; EAL domain-containing protein	4224497..4227262	Alicycliphilus denitrificans BC	
ALIDE_RS20150	CDS	gph	NC_014910.1	4227201	4227953	R	PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (PF00702); Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycolate phosphatase	complement(4227201..4227953)	Alicycliphilus denitrificans BC	
ALIDE_RS20155	CDS	ALIDE_RS20155	NC_014910.1	4228142	4228516	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4228142..4228516	Alicycliphilus denitrificans BC	
ALIDE_RS20160	CDS	rpe	NC_014910.1	4228535	4229215	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribulose-phosphate 3-epimerase	complement(4228535..4229215)	Alicycliphilus denitrificans BC	
ALIDE_RS20165	CDS	apaG	NC_014910.1	4229264	4229671	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Co2+/Mg2+ efflux protein ApaG	4229264..4229671	Alicycliphilus denitrificans BC	
ALIDE_RS20170	CDS	ALIDE_RS20170	NC_014910.1	4229668	4231656	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific recombinase	4229668..4231656	Alicycliphilus denitrificans BC	
ALIDE_RS20175	CDS	ALIDE_RS20175	NC_014910.1	4231826	4233091	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation:proton antiporter	4231826..4233091	Alicycliphilus denitrificans BC	
ALIDE_RS20180	CDS	ALIDE_RS20180	NC_014910.1	4233081	4234205	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YbdK family carboxylate-amine ligase	4233081..4234205	Alicycliphilus denitrificans BC	
ALIDE_RS20185	CDS	thiL	NC_014910.1	4234208	4235191	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine-phosphate kinase	4234208..4235191	Alicycliphilus denitrificans BC	
ALIDE_RS20190	CDS	ALIDE_RS20190	NC_014910.1	4235179	4235868	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	complement(4235179..4235868)	Alicycliphilus denitrificans BC	
ALIDE_RS20195	CDS	ALIDE_RS20195	NC_014910.1	4236027	4237769	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta fold hydrolase	4236027..4237769	Alicycliphilus denitrificans BC	
ALIDE_RS20200	CDS	ALIDE_RS20200	NC_014910.1	4237783	4239255	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux transporter outer membrane subunit	4237783..4239255	Alicycliphilus denitrificans BC	
ALIDE_RS20205	CDS	ALIDE_RS20205	NC_014910.1	4239252	4240325	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HlyD family efflux transporter periplasmic adaptor subunit	4239252..4240325	Alicycliphilus denitrificans BC	
ALIDE_RS20210	CDS	rbbA	NC_014910.1	4240329	4243076	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated ATPase/putative transporter RbbA	4240329..4243076	Alicycliphilus denitrificans BC	
ALIDE_RS20215	CDS	ALIDE_RS20215	NC_014910.1	4243076	4244209	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease	4243076..4244209	Alicycliphilus denitrificans BC	
ALIDE_RS20220	CDS	ALIDE_RS20220	NC_014910.1	4244228	4245670	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase	4244228..4245670	Alicycliphilus denitrificans BC	
ALIDE_RS20225	CDS	ALIDE_RS20225	NC_014910.1	4245667	4246857	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate/propionate family kinase	4245667..4246857	Alicycliphilus denitrificans BC	
ALIDE_RS20230	CDS	ALIDE_RS20230	NC_014910.1	4246867	4247394	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphatase A	4246867..4247394	Alicycliphilus denitrificans BC	
ALIDE_RS20235	CDS	ALIDE_RS20235	NC_014910.1	4247401	4247919	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CinA family protein	4247401..4247919	Alicycliphilus denitrificans BC	
ALIDE_RS20240	CDS	ALIDE_RS20240	NC_014910.1	4247932	4249566	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	complement(4247932..4249566)	Alicycliphilus denitrificans BC	
ALIDE_RS20245	CDS	ALIDE_RS20245	NC_014910.1	4249569	4251815	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; EAL domain-containing protein	complement(4249569..4251815)	Alicycliphilus denitrificans BC	
ALIDE_RS20250	CDS	ALIDE_RS20250	NC_014910.1	4252097	4252702	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	complement(4252097..4252702)	Alicycliphilus denitrificans BC	
ALIDE_RS20255	CDS	ALIDE_RS20255	NC_014910.1	4252699	4254135	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PAS domain-containing protein	complement(4252699..4254135)	Alicycliphilus denitrificans BC	
ALIDE_RS20260	CDS	ALIDE_RS20260	NC_014910.1	4254438	4255253	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YecA family protein	complement(4254438..4255253)	Alicycliphilus denitrificans BC	
ALIDE_RS20265	CDS	ALIDE_RS20265	NC_014910.1	4255686	4256171	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative toxin-antitoxin system toxin component, PIN family	complement(4255686..4256171)	Alicycliphilus denitrificans BC	
ALIDE_RS20270	CDS	ALIDE_RS20270	NC_014910.1	4256161	4257429	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; THUMP domain-containing protein	complement(4256161..4257429)	Alicycliphilus denitrificans BC	
ALIDE_RS20275	CDS	ALIDE_RS20275	NC_014910.1	4257542	4259365	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	4257542..4259365	Alicycliphilus denitrificans BC	
ALIDE_RS20280	CDS	ALIDE_RS20280	NC_014910.1	4259367	4259810	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioesterase family protein	complement(4259367..4259810)	Alicycliphilus denitrificans BC	
ALIDE_RS20285	CDS	ALIDE_RS20285	NC_014910.1	4259824	4261377	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase factor sigma-54	complement(4259824..4261377)	Alicycliphilus denitrificans BC	
ALIDE_RS20290	CDS	lptB	NC_014910.1	4261427	4262215	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS export ABC transporter ATP-binding protein	complement(4261427..4262215)	Alicycliphilus denitrificans BC	
ALIDE_RS20295	CDS	lptA	NC_014910.1	4262224	4262868	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide transport periplasmic protein LptA	complement(4262224..4262868)	Alicycliphilus denitrificans BC	
ALIDE_RS20300	CDS	ALIDE_RS20300	NC_014910.1	4262988	4263644	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein DsbA/DsbL	complement(4262988..4263644)	Alicycliphilus denitrificans BC	
ALIDE_RS20305	CDS	ALIDE_RS20305	NC_014910.1	4263724	4264359	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SPOR domain-containing protein	complement(4263724..4264359)	Alicycliphilus denitrificans BC	
ALIDE_RS20310	CDS	argS	NC_014910.1	4264372	4266075	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine--tRNA ligase	complement(4264372..4266075)	Alicycliphilus denitrificans BC	
ALIDE_RS20315	CDS	ALIDE_RS20315	NC_014910.1	4266200	4266526	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PsiF family protein	4266200..4266526	Alicycliphilus denitrificans BC	
ALIDE_RS20320	CDS	ALIDE_RS20320	NC_014910.1	4266584	4267039	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2214 family protein	complement(4266584..4267039)	Alicycliphilus denitrificans BC	
ALIDE_RS20325	CDS	ALIDE_RS20325	NC_014910.1	4267133	4268470	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dicarboxylate/amino acid:cation symporter	complement(4267133..4268470)	Alicycliphilus denitrificans BC	
ALIDE_RS20330	CDS	ALIDE_RS20330	NC_014910.1	4268671	4271331	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PAS-domain containing protein	4268671..4271331	Alicycliphilus denitrificans BC	
ALIDE_RS20335	CDS	ALIDE_RS20335	NC_014910.1	4271397	4272035	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	complement(4271397..4272035)	Alicycliphilus denitrificans BC	
ALIDE_RS20340	CDS	ALIDE_RS20340	NC_014910.1	4272049	4272981	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(4272049..4272981)	Alicycliphilus denitrificans BC	
ALIDE_RS20345	CDS	ALIDE_RS20345	NC_014910.1	4273216	4275414	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; malate synthase G	4273216..4275414	Alicycliphilus denitrificans BC	
ALIDE_RS23650	CDS	ALIDE_RS23650	NC_014910.1	4275518	4275775	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine-rich CWC family protein	4275518..4275775	Alicycliphilus denitrificans BC	
ALIDE_RS20350	CDS	ALIDE_RS20350	NC_014910.1	4275751	4275939	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-oxalocrotonate tautomerase	4275751..4275939	Alicycliphilus denitrificans BC	
ALIDE_RS20355	CDS	ALIDE_RS20355	NC_014910.1	4275962	4276750	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF169 domain-containing protein	4275962..4276750	Alicycliphilus denitrificans BC	
ALIDE_RS20360	CDS	ALIDE_RS20360	NC_014910.1	4276775	4277542	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; class II glutamine amidotransferase	4276775..4277542	Alicycliphilus denitrificans BC	
ALIDE_RS20390	CDS	gshB	NC_014910.1	4283380	4284336	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione synthase	complement(4283380..4284336)	Alicycliphilus denitrificans BC	
ALIDE_RS20395	CDS	ALIDE_RS20395	NC_014910.1	4284359	4285558	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; benzoate/H(+) symporter BenE family transporter	complement(4284359..4285558)	Alicycliphilus denitrificans BC	
ALIDE_RS20400	CDS	ALIDE_RS20400	NC_014910.1	4285692	4287563	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter Kup	complement(4285692..4287563)	Alicycliphilus denitrificans BC	
ALIDE_RS20405	CDS	gshA	NC_014910.1	4287657	4288952	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate--cysteine ligase	complement(4287657..4288952)	Alicycliphilus denitrificans BC	
ALIDE_RS20410	CDS	ALIDE_RS20410	NC_014910.1	4289020	4290486	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter TrkG	complement(4289020..4290486)	Alicycliphilus denitrificans BC	
ALIDE_RS20415	CDS	trkA	NC_014910.1	4290488	4291963	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Trk system potassium transporter TrkA	complement(4290488..4291963)	Alicycliphilus denitrificans BC	
ALIDE_RS20420	CDS	ALIDE_RS20420	NC_014910.1	4292024	4293304	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate-5-semialdehyde dehydrogenase	complement(4292024..4293304)	Alicycliphilus denitrificans BC	
ALIDE_RS20425	CDS	ALIDE_RS20425	NC_014910.1	4293376	4293711	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4293376..4293711)	Alicycliphilus denitrificans BC	
ALIDE_RS20430	CDS	ALIDE_RS20430	NC_014910.1	4293653	4294714	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-L-glutamate ligase	complement(4293653..4294714)	Alicycliphilus denitrificans BC	
ALIDE_RS20435	CDS	legP	NC_014910.1	4294711	4296054	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Dot/Icm T4SS effector Zinc-dependent metalloprotease LegP	complement(4294711..4296054)	Alicycliphilus denitrificans BC	
ALIDE_RS20440	CDS	ALIDE_RS20440	NC_014910.1	4296367	4296651	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4296367..4296651	Alicycliphilus denitrificans BC	
ALIDE_RS20445	CDS	holA	NC_014910.1	4296853	4297932	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit delta	complement(4296853..4297932)	Alicycliphilus denitrificans BC	
ALIDE_RS20450	CDS	lptE	NC_014910.1	4297953	4298465	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS assembly lipoprotein LptE	complement(4297953..4298465)	Alicycliphilus denitrificans BC	
ALIDE_RS20455	CDS	leuS	NC_014910.1	4298465	4301170	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine--tRNA ligase	complement(4298465..4301170)	Alicycliphilus denitrificans BC	
ALIDE_RS20460	CDS	ALIDE_RS20460	NC_014910.1	4301372	4302571	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive ion channel family protein	4301372..4302571	Alicycliphilus denitrificans BC	
ALIDE_RS20465	CDS	ALIDE_RS20465	NC_014910.1	4302876	4304402	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase family protein	4302876..4304402	Alicycliphilus denitrificans BC	
ALIDE_RS20470	CDS	ALIDE_RS20470	NC_014910.1	4304485	4305087	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Plug domain-containing protein	4304485..4305087	Alicycliphilus denitrificans BC	
ALIDE_RS20475	CDS	ALIDE_RS20475	NC_014910.1	4305316	4307289	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54-dependent Fis family transcriptional regulator	complement(4305316..4307289)	Alicycliphilus denitrificans BC	
ALIDE_RS20480	CDS	pedF	NC_014910.1	4307657	4308139	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome c-550 PedF	4307657..4308139	Alicycliphilus denitrificans BC	
ALIDE_RS20485	CDS	ALIDE_RS20485	NC_014910.1	4308554	4311130	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; EAL domain-containing protein	4308554..4311130	Alicycliphilus denitrificans BC	
ALIDE_RS20490	CDS	ALIDE_RS20490	NC_014910.1	4311137	4311556	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbD	complement(4311137..4311556)	Alicycliphilus denitrificans BC	
ALIDE_RS20495	CDS	ALIDE_RS20495	NC_014910.1	4311563	4312216	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MotA/TolQ/ExbB proton channel family protein	complement(4311563..4312216)	Alicycliphilus denitrificans BC	
ALIDE_RS20500	CDS	dapB	NC_014910.1	4312224	4313045	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-tetrahydrodipicolinate reductase	complement(4312224..4313045)	Alicycliphilus denitrificans BC	
ALIDE_RS20505	CDS	bamE	NC_014910.1	4313100	4313642	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein assembly factor BamE	complement(4313100..4313642)	Alicycliphilus denitrificans BC	
ALIDE_RS20510	CDS	fur	NC_014910.1	4313754	4314173	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric iron uptake transcriptional regulator	4313754..4314173	Alicycliphilus denitrificans BC	
ALIDE_RS20515	CDS	hprK	NC_014910.1	4314181	4315134	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HPr(Ser) kinase/phosphatase	complement(4314181..4315134)	Alicycliphilus denitrificans BC	
ALIDE_RS20520	CDS	ALIDE_RS20520	NC_014910.1	4315428	4315895	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA	complement(4315428..4315895)	Alicycliphilus denitrificans BC	
ALIDE_RS20525	CDS	raiA	NC_014910.1	4316036	4316383	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated translation inhibitor RaiA	complement(4316036..4316383)	Alicycliphilus denitrificans BC	
ALIDE_RS20530	CDS	ALIDE_RS20530	NC_014910.1	4316706	4317626	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazolesuccinocarboxamide synthase	4316706..4317626	Alicycliphilus denitrificans BC	
ALIDE_RS20535	CDS	trxA	NC_014910.1	4317676	4318584	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin	complement(4317676..4318584)	Alicycliphilus denitrificans BC	
ALIDE_RS20540	CDS	purE	NC_014910.1	4318726	4319223	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-(carboxyamino)imidazole ribonucleotide mutase	4318726..4319223	Alicycliphilus denitrificans BC	
ALIDE_RS20545	CDS	ALIDE_RS20545	NC_014910.1	4319220	4320389	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-(carboxyamino)imidazole ribonucleotide synthase	4319220..4320389	Alicycliphilus denitrificans BC	
ALIDE_RS20550	CDS	ALIDE_RS20550	NC_014910.1	4320395	4321393	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; L-threonylcarbamoyladenylate synthase	4320395..4321393	Alicycliphilus denitrificans BC	
ALIDE_RS20555	CDS	ALIDE_RS20555	NC_014910.1	4321457	4322413	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SGNH/GDSL hydrolase family protein	4321457..4322413	Alicycliphilus denitrificans BC	
ALIDE_RS20560	CDS	ALIDE_RS20560	NC_014910.1	4322571	4323296	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4322571..4323296)	Alicycliphilus denitrificans BC	
ALIDE_RS20565	CDS	ALIDE_RS20565	NC_014910.1	4323320	4324843	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	complement(4323320..4324843)	Alicycliphilus denitrificans BC	
ALIDE_RS23655	CDS	ALIDE_RS23655	NC_014910.1	4324957	4326534	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipase D-like domain-containing protein	complement(4324957..4326534)	Alicycliphilus denitrificans BC	
ALIDE_RS20575	CDS	ALIDE_RS20575	NC_014910.1	4326726	4327589	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; WYL domain-containing protein	4326726..4327589	Alicycliphilus denitrificans BC	
ALIDE_RS20580	CDS	ALIDE_RS20580	NC_014910.1	4327555	4327827	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF6471 domain-containing protein	complement(4327555..4327827)	Alicycliphilus denitrificans BC	
ALIDE_RS20585	CDS	ALIDE_RS20585	NC_014910.1	4327907	4328263	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	4327907..4328263	Alicycliphilus denitrificans BC	
ALIDE_RS20590	CDS	ALIDE_RS20590	NC_014910.1	4328296	4328979	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	4328296..4328979	Alicycliphilus denitrificans BC	
ALIDE_RS20595	CDS	ALIDE_RS20595	NC_014910.1	4328976	4330280	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS1595 family transposase	4328976..4330280	Alicycliphilus denitrificans BC	
ALIDE_RS20600	CDS	ALIDE_RS20600	NC_014910.1	4330411	4331499	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS5-like element ISDisp1 family transposase	4330411..4331499	Alicycliphilus denitrificans BC	
ALIDE_RS23665	CDS	ALIDE_RS23665	NC_014910.1	4331822	4333483	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; choice-of-anchor D domain-containing protein	complement(4331822..4333483)	Alicycliphilus denitrificans BC	
ALIDE_RS23145	CDS	ALIDE_RS23145	NC_014910.1	4333599	4334120	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(4333599..4334120)	Alicycliphilus denitrificans BC	
ALIDE_RS20615	CDS	ALIDE_RS20615	NC_014910.1	4334243	4334938	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; OmpW family outer membrane protein	complement(4334243..4334938)	Alicycliphilus denitrificans BC	
ALIDE_RS20620	CDS	ALIDE_RS20620	NC_014910.1	4334967	4336526	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase	complement(4334967..4336526)	Alicycliphilus denitrificans BC	
ALIDE_RS20625	CDS	dacB	NC_014910.1	4336629	4338101	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	complement(4336629..4338101)	Alicycliphilus denitrificans BC	
ALIDE_RS20630	CDS	tsaB	NC_014910.1	4338177	4338905	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	4338177..4338905	Alicycliphilus denitrificans BC	
ALIDE_RS20635	CDS	rimI	NC_014910.1	4338902	4339378	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein S18-alanine N-acetyltransferase	4338902..4339378	Alicycliphilus denitrificans BC	
ALIDE_RS20640	CDS	ALIDE_RS20640	NC_014910.1	4339512	4340114	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil-DNA glycosylase family protein	4339512..4340114	Alicycliphilus denitrificans BC	
ALIDE_RS20645	CDS	corA	NC_014910.1	4340285	4341271	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium/cobalt transporter CorA	4340285..4341271	Alicycliphilus denitrificans BC	
ALIDE_RS20650	CDS	ALIDE_RS20650	NC_014910.1	4341539	4341775	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4341539..4341775	Alicycliphilus denitrificans BC	
ALIDE_RS20655	CDS	ALIDE_RS20655	NC_014910.1	4342075	4342257	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4342075..4342257	Alicycliphilus denitrificans BC	
ALIDE_RS20660	CDS	ALIDE_RS20660	NC_014910.1	4342326	4343093	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	complement(4342326..4343093)	Alicycliphilus denitrificans BC	
ALIDE_RS20665	CDS	ALIDE_RS20665	NC_014910.1	4343153	4344829	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain-fatty-acid--CoA ligase	complement(4343153..4344829)	Alicycliphilus denitrificans BC	
ALIDE_RS20670	CDS	pntB	NC_014910.1	4344920	4346332	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	complement(4344920..4346332)	Alicycliphilus denitrificans BC	
ALIDE_RS20675	CDS	ALIDE_RS20675	NC_014910.1	4346369	4347979	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	complement(4346369..4347979)	Alicycliphilus denitrificans BC	
ALIDE_RS20680	CDS	ALIDE_RS20680	NC_014910.1	4348034	4348753	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4348034..4348753)	Alicycliphilus denitrificans BC	
ALIDE_RS20685	CDS	fba	NC_014910.1	4348877	4349941	R	catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; class II fructose-bisphosphate aldolase	complement(4348877..4349941)	Alicycliphilus denitrificans BC	
ALIDE_RS20690	CDS	pyk	NC_014910.1	4350079	4351515	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate kinase	complement(4350079..4351515)	Alicycliphilus denitrificans BC	
ALIDE_RS20695	CDS	ALIDE_RS20695	NC_014910.1	4351597	4352979	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase P N-terminal domain-containing protein	complement(4351597..4352979)	Alicycliphilus denitrificans BC	
ALIDE_RS20700	CDS	ALIDE_RS20700	NC_014910.1	4353307	4354071	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase	complement(4353307..4354071)	Alicycliphilus denitrificans BC	
ALIDE_RS20705	CDS	ALIDE_RS20705	NC_014910.1	4354086	4355036	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(4354086..4355036)	Alicycliphilus denitrificans BC	
ALIDE_RS20710	CDS	ALIDE_RS20710	NC_014910.1	4355058	4356236	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(4355058..4356236)	Alicycliphilus denitrificans BC	
ALIDE_RS20715	CDS	ALIDE_RS20715	NC_014910.1	4356247	4357410	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiolase	complement(4356247..4357410)	Alicycliphilus denitrificans BC	
ALIDE_RS20720	CDS	ALIDE_RS20720	NC_014910.1	4357407	4357808	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Zn-ribbon domain-containing OB-fold protein	complement(4357407..4357808)	Alicycliphilus denitrificans BC	
ALIDE_RS20725	CDS	ALIDE_RS20725	NC_014910.1	4357813	4358820	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(4357813..4358820)	Alicycliphilus denitrificans BC	
ALIDE_RS20730	CDS	ALIDE_RS20730	NC_014910.1	4358980	4359888	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(4358980..4359888)	Alicycliphilus denitrificans BC	
ALIDE_RS20735	CDS	ALIDE_RS20735	NC_014910.1	4359894	4360670	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotidyltransferase family protein	complement(4359894..4360670)	Alicycliphilus denitrificans BC	
ALIDE_RS20740	CDS	tkt	NC_014910.1	4360745	4362781	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase	4360745..4362781	Alicycliphilus denitrificans BC	
ALIDE_RS20745	CDS	gap	NC_014910.1	4362813	4363814	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type I glyceraldehyde-3-phosphate dehydrogenase	4362813..4363814	Alicycliphilus denitrificans BC	
ALIDE_RS20750	CDS	ALIDE_RS20750	NC_014910.1	4363976	4364320	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HPF/RaiA family ribosome-associated protein	complement(4363976..4364320)	Alicycliphilus denitrificans BC	
ALIDE_RS20755	CDS	ALIDE_RS20755	NC_014910.1	4364494	4365381	D	Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.; type 1 glutamine amidotransferase	4364494..4365381	Alicycliphilus denitrificans BC	
ALIDE_RS20760	CDS	ALIDE_RS20760	NC_014910.1	4365382	4366266	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(4365382..4366266)	Alicycliphilus denitrificans BC	
ALIDE_RS20765	CDS	ALIDE_RS20765	NC_014910.1	4366387	4367277	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; amidohydrolase family protein	4366387..4367277	Alicycliphilus denitrificans BC	
ALIDE_RS20770	CDS	ALIDE_RS20770	NC_014910.1	4367320	4368150	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	4367320..4368150	Alicycliphilus denitrificans BC	
ALIDE_RS20775	CDS	ALIDE_RS20775	NC_014910.1	4368207	4369178	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	4368207..4369178	Alicycliphilus denitrificans BC	
ALIDE_RS20780	CDS	ALIDE_RS20780	NC_014910.1	4369202	4369723	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymuconolactone decarboxylase family protein	4369202..4369723	Alicycliphilus denitrificans BC	
ALIDE_RS20785	CDS	ALIDE_RS20785	NC_014910.1	4369720	4370433	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4369720..4370433	Alicycliphilus denitrificans BC	
ALIDE_RS20790	CDS	ALIDE_RS20790	NC_014910.1	4370458	4371672	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY-associated TM helix domain-containing protein	complement(4370458..4371672)	Alicycliphilus denitrificans BC	
ALIDE_RS20795	CDS	ALIDE_RS20795	NC_014910.1	4371672	4373879	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent siderophore receptor	complement(4371672..4373879)	Alicycliphilus denitrificans BC	
ALIDE_RS20800	CDS	ALIDE_RS20800	NC_014910.1	4374020	4374493	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase	complement(4374020..4374493)	Alicycliphilus denitrificans BC	
ALIDE_RS20805	CDS	ALIDE_RS20805	NC_014910.1	4374548	4375519	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(4374548..4375519)	Alicycliphilus denitrificans BC	
ALIDE_RS20810	CDS	ALIDE_RS20810	NC_014910.1	4375551	4375904	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4375551..4375904)	Alicycliphilus denitrificans BC	
ALIDE_RS20815	CDS	ALIDE_RS20815	NC_014910.1	4375923	4377284	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyclic terpene utilization AtuA family protein	complement(4375923..4377284)	Alicycliphilus denitrificans BC	
ALIDE_RS20820	CDS	ALIDE_RS20820	NC_014910.1	4377393	4378283	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	4377393..4378283	Alicycliphilus denitrificans BC	
ALIDE_RS20825	CDS	ALIDE_RS20825	NC_014910.1	4378383	4378859	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GyrI-like domain-containing protein	complement(4378383..4378859)	Alicycliphilus denitrificans BC	
ALIDE_RS20830	CDS	ALIDE_RS20830	NC_014910.1	4379161	4380162	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	complement(4379161..4380162)	Alicycliphilus denitrificans BC	
ALIDE_RS20835	CDS	ALIDE_RS20835	NC_014910.1	4380313	4380936	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4380313..4380936)	Alicycliphilus denitrificans BC	
ALIDE_RS20840	CDS	ALIDE_RS20840	NC_014910.1	4380964	4381710	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DTW domain-containing protein	complement(4380964..4381710)	Alicycliphilus denitrificans BC	
ALIDE_RS20845	CDS	ALIDE_RS20845	NC_014910.1	4381888	4382730	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	4381888..4382730	Alicycliphilus denitrificans BC	
ALIDE_RS20850	CDS	ALIDE_RS20850	NC_014910.1	4382727	4383878	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; thiolase family protein	4382727..4383878	Alicycliphilus denitrificans BC	
ALIDE_RS20855	CDS	ALIDE_RS20855	NC_014910.1	4383881	4384240	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; OB-fold domain-containing protein	4383881..4384240	Alicycliphilus denitrificans BC	
ALIDE_RS20860	CDS	ALIDE_RS20860	NC_014910.1	4384263	4385240	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	4384263..4385240	Alicycliphilus denitrificans BC	
ALIDE_RS20865	CDS	ALIDE_RS20865	NC_014910.1	4385249	4387336	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate--CoA ligase family protein	4385249..4387336	Alicycliphilus denitrificans BC	
ALIDE_RS20870	CDS	ALIDE_RS20870	NC_014910.1	4387385	4388083	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase N-terminal domain-containing protein	complement(4387385..4388083)	Alicycliphilus denitrificans BC	
ALIDE_RS20875	CDS	ALIDE_RS20875	NC_014910.1	4388086	4388847	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP reductase	complement(4388086..4388847)	Alicycliphilus denitrificans BC	
ALIDE_RS20880	CDS	ALIDE_RS20880	NC_014910.1	4388875	4389276	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; VOC family protein	complement(4388875..4389276)	Alicycliphilus denitrificans BC	
ALIDE_RS20885	CDS	ALIDE_RS20885	NC_014910.1	4389321	4392242	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase III	complement(4389321..4392242)	Alicycliphilus denitrificans BC	
ALIDE_RS20890	CDS	ALIDE_RS20890	NC_014910.1	4392343	4392894	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SET domain-containing protein-lysine N-methyltransferase	4392343..4392894	Alicycliphilus denitrificans BC	
ALIDE_RS20895	CDS	ALIDE_RS20895	NC_014910.1	4392891	4393721	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin--[acetyl-CoA-carboxylase] ligase	4392891..4393721	Alicycliphilus denitrificans BC	
ALIDE_RS20900	CDS	ALIDE_RS20900	NC_014910.1	4393878	4394549	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; SPOR domain-containing protein	4393878..4394549	Alicycliphilus denitrificans BC	
ALIDE_RS20905	CDS	ALIDE_RS20905	NC_014910.1	4394557	4395594	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-binding dehydrogenase	complement(4394557..4395594)	Alicycliphilus denitrificans BC	
ALIDE_RS20910	CDS	ALIDE_RS20910	NC_014910.1	4395591	4396046	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC/PaaZ C-terminal domain-containing protein	complement(4395591..4396046)	Alicycliphilus denitrificans BC	
ALIDE_RS20915	CDS	ALIDE_RS20915	NC_014910.1	4396033	4396503	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase N-terminal domain-containing protein	complement(4396033..4396503)	Alicycliphilus denitrificans BC	
ALIDE_RS20920	CDS	ALIDE_RS20920	NC_014910.1	4396514	4397710	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(4396514..4397710)	Alicycliphilus denitrificans BC	
ALIDE_RS20925	CDS	ALIDE_RS20925	NC_014910.1	4397770	4399752	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP-binding protein	complement(4397770..4399752)	Alicycliphilus denitrificans BC	
ALIDE_RS20930	CDS	ALIDE_RS20930	NC_014910.1	4399884	4400390	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MarR family transcriptional regulator	4399884..4400390	Alicycliphilus denitrificans BC	
ALIDE_RS20935	CDS	ALIDE_RS20935	NC_014910.1	4400472	4400843	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein	4400472..4400843	Alicycliphilus denitrificans BC	
ALIDE_RS20940	CDS	ALIDE_RS20940	NC_014910.1	4401111	4401809	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RES family NAD+ phosphorylase	4401111..4401809	Alicycliphilus denitrificans BC	
ALIDE_RS20945	CDS	ALIDE_RS20945	NC_014910.1	4401820	4402893	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD/NADP octopine/nopaline dehydrogenase family protein	complement(4401820..4402893)	Alicycliphilus denitrificans BC	
ALIDE_RS20950	CDS	ALIDE_RS20950	NC_014910.1	4402890	4403882	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(4402890..4403882)	Alicycliphilus denitrificans BC	
ALIDE_RS20955	CDS	ALIDE_RS20955	NC_014910.1	4403950	4405395	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase	complement(4403950..4405395)	Alicycliphilus denitrificans BC	
ALIDE_RS20960	CDS	ALIDE_RS20960	NC_014910.1	4405461	4406135	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	complement(4405461..4406135)	Alicycliphilus denitrificans BC	
ALIDE_RS20965	CDS	ALIDE_RS20965	NC_014910.1	4406263	4407393	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-aminoethylphosphonate--pyruvate transaminase	complement(4406263..4407393)	Alicycliphilus denitrificans BC	
ALIDE_RS20970	CDS	ALIDE_RS20970	NC_014910.1	4407428	4409161	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative 2-aminoethylphosphonate ABC transporter permease subunit	complement(4407428..4409161)	Alicycliphilus denitrificans BC	
ALIDE_RS20975	CDS	ALIDE_RS20975	NC_014910.1	4409158	4410291	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	complement(4409158..4410291)	Alicycliphilus denitrificans BC	
ALIDE_RS20980	CDS	ALIDE_RS20980	NC_014910.1	4410369	4411406	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	complement(4410369..4411406)	Alicycliphilus denitrificans BC	
ALIDE_RS20985	CDS	ALIDE_RS20985	NC_014910.1	4411549	4412277	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate utilization associated transcriptional regulator	4411549..4412277	Alicycliphilus denitrificans BC	
ALIDE_RS20990	CDS	phnA	NC_014910.1	4412279	4413514	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonoacetate hydrolase	4412279..4413514	Alicycliphilus denitrificans BC	
ALIDE_RS20995	CDS	phnY	NC_014910.1	4413545	4414993	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonoacetaldehyde dehydrogenase	4413545..4414993	Alicycliphilus denitrificans BC	
ALIDE_RS21000	CDS	ALIDE_RS21000	NC_014910.1	4414999	4415538	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate degradation HD-domain oxygenase	4414999..4415538	Alicycliphilus denitrificans BC	
ALIDE_RS21005	CDS	ALIDE_RS21005	NC_014910.1	4415636	4417024	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase	4415636..4417024	Alicycliphilus denitrificans BC	
ALIDE_RS21010	CDS	alr	NC_014910.1	4417163	4418239	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine racemase	complement(4417163..4418239)	Alicycliphilus denitrificans BC	
ALIDE_RS21015	CDS	ALIDE_RS21015	NC_014910.1	4418236	4419546	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-amino acid dehydrogenase	complement(4418236..4419546)	Alicycliphilus denitrificans BC	
ALIDE_RS21020	CDS	ALIDE_RS21020	NC_014910.1	4419673	4420185	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; winged helix-turn-helix transcriptional regulator	4419673..4420185	Alicycliphilus denitrificans BC	
ALIDE_RS21025	CDS	ALIDE_RS21025	NC_014910.1	4420170	4420649	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MarR family winged helix-turn-helix transcriptional regulator	complement(4420170..4420649)	Alicycliphilus denitrificans BC	
ALIDE_RS21030	CDS	recA	NC_014910.1	4420796	4421905	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RecA	4420796..4421905	Alicycliphilus denitrificans BC	
ALIDE_RS21035	CDS	recX	NC_014910.1	4421986	4422444	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; recombination regulator RecX	4421986..4422444	Alicycliphilus denitrificans BC	
ALIDE_RS21040	CDS	ALIDE_RS21040	NC_014910.1	4422500	4424794	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF1631 family protein	complement(4422500..4424794)	Alicycliphilus denitrificans BC	
ALIDE_RS21045	CDS	secF	NC_014910.1	4424851	4425804	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein translocase subunit SecF	complement(4424851..4425804)	Alicycliphilus denitrificans BC	
ALIDE_RS21050	CDS	secD	NC_014910.1	4425816	4427711	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein translocase subunit SecD	complement(4425816..4427711)	Alicycliphilus denitrificans BC	
ALIDE_RS21055	CDS	yajC	NC_014910.1	4427794	4428126	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit YajC	complement(4427794..4428126)	Alicycliphilus denitrificans BC	
ALIDE_RS21060	CDS	ALIDE_RS21060	NC_014910.1	4428330	4431947	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; indolepyruvate ferredoxin oxidoreductase family protein	complement(4428330..4431947)	Alicycliphilus denitrificans BC	
ALIDE_RS21065	CDS	ALIDE_RS21065	NC_014910.1	4432127	4432600	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Lrp/AsnC family transcriptional regulator	4432127..4432600	Alicycliphilus denitrificans BC	
ALIDE_RS21070	CDS	ALIDE_RS21070	NC_014910.1	4432742	4434451	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	4432742..4434451	Alicycliphilus denitrificans BC	
ALIDE_RS21075	CDS	ALIDE_RS21075	NC_014910.1	4434560	4435693	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MltA domain-containing protein	complement(4434560..4435693)	Alicycliphilus denitrificans BC	
ALIDE_RS24920	CDS	ALIDE_RS24920	NC_014910.1	4435692	4435814	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4435692..4435814	Alicycliphilus denitrificans BC	
ALIDE_RS21080	CDS	ALIDE_RS21080	NC_014910.1	4435942	4436586	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; OmpA family protein	4435942..4436586	Alicycliphilus denitrificans BC	
ALIDE_RS21085	CDS	ALIDE_RS21085	NC_014910.1	4436644	4437279	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator	complement(4436644..4437279)	Alicycliphilus denitrificans BC	
ALIDE_RS21090	CDS	ALIDE_RS21090	NC_014910.1	4437279	4439372	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	complement(4437279..4439372)	Alicycliphilus denitrificans BC	
ALIDE_RS21095	CDS	ALIDE_RS21095	NC_014910.1	4439396	4440211	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon-nitrogen hydrolase family protein	complement(4439396..4440211)	Alicycliphilus denitrificans BC	
ALIDE_RS21100	CDS	ALIDE_RS21100	NC_014910.1	4440208	4444278	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; YhdP family protein	complement(4440208..4444278)	Alicycliphilus denitrificans BC	
ALIDE_RS21105	CDS	glnE	NC_014910.1	4444372	4447119	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	4444372..4447119	Alicycliphilus denitrificans BC	
ALIDE_RS21110	CDS	ALIDE_RS21110	NC_014910.1	4447348	4448490	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter periplasmic adaptor subunit	4447348..4448490	Alicycliphilus denitrificans BC	
ALIDE_RS21115	CDS	ALIDE_RS21115	NC_014910.1	4448503	4451562	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; efflux RND transporter permease subunit	4448503..4451562	Alicycliphilus denitrificans BC	
ALIDE_RS21120	CDS	ALIDE_RS21120	NC_014910.1	4451956	4452570	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase N-terminal domain-containing protein	complement(4451956..4452570)	Alicycliphilus denitrificans BC	
ALIDE_RS21125	CDS	purB	NC_014910.1	4452683	4454062	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylosuccinate lyase	4452683..4454062	Alicycliphilus denitrificans BC	
ALIDE_RS21130	CDS	ALIDE_RS21130	NC_014910.1	4454132	4454692	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YaeQ family protein	4454132..4454692	Alicycliphilus denitrificans BC	
ALIDE_RS21135	CDS	ALIDE_RS21135	NC_014910.1	4454963	4455268	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2007 domain-containing protein	complement(4454963..4455268)	Alicycliphilus denitrificans BC	
ALIDE_RS21140	CDS	ALIDE_RS21140	NC_014910.1	4455309	4455713	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3717 domain-containing protein	complement(4455309..4455713)	Alicycliphilus denitrificans BC	
ALIDE_RS21145	CDS	ALIDE_RS21145	NC_014910.1	4456121	4456858	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TerC family protein	4456121..4456858	Alicycliphilus denitrificans BC	
ALIDE_RS21150	CDS	ALIDE_RS21150	NC_014910.1	4456893	4457363	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4456893..4457363	Alicycliphilus denitrificans BC	
ALIDE_RS21155	CDS	ALIDE_RS21155	NC_014910.1	4457365	4458285	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(4457365..4458285)	Alicycliphilus denitrificans BC	
ALIDE_RS21160	CDS	ALIDE_RS21160	NC_014910.1	4458325	4458699	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	complement(4458325..4458699)	Alicycliphilus denitrificans BC	
ALIDE_RS24835	CDS	ALIDE_RS24835	NC_014910.1	4458675	4459642	R	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(4458675..4459642)	Alicycliphilus denitrificans BC	
ALIDE_RS21170	CDS	ALIDE_RS21170	NC_014910.1	4459801	4460157	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phage holin family protein	4459801..4460157	Alicycliphilus denitrificans BC	
ALIDE_RS21175	CDS	ALIDE_RS21175	NC_014910.1	4460125	4461651	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M48 family metalloprotease	complement(4460125..4461651)	Alicycliphilus denitrificans BC	
ALIDE_RS21180	CDS	moaC	NC_014910.1	4461801	4462286	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic pyranopterin monophosphate synthase MoaC	4461801..4462286	Alicycliphilus denitrificans BC	
ALIDE_RS24280	CDS	ALIDE_RS24280	NC_014910.1	4462424	4463215	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(4462424..4463215)	Alicycliphilus denitrificans BC	
ALIDE_RS23670	CDS	ALIDE_RS23670	NC_014910.1	4463310	4463879	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; pilin	complement(4463310..4463879)	Alicycliphilus denitrificans BC	
ALIDE_RS21190	CDS	ALIDE_RS21190	NC_014910.1	4464181	4464969	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 3',5'-cyclic-nucleotide phosphodiesterase	complement(4464181..4464969)	Alicycliphilus denitrificans BC	
ALIDE_RS21195	CDS	ALIDE_RS21195	NC_014910.1	4465037	4465663	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FHA domain-containing protein	complement(4465037..4465663)	Alicycliphilus denitrificans BC	
ALIDE_RS21200	CDS	ALIDE_RS21200	NC_014910.1	4465725	4466531	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Stp1/IreP family PP2C-type Ser/Thr phosphatase	complement(4465725..4466531)	Alicycliphilus denitrificans BC	
ALIDE_RS21205	CDS	ALIDE_RS21205	NC_014910.1	4466758	4467441	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TerC family protein	complement(4466758..4467441)	Alicycliphilus denitrificans BC	
ALIDE_RS21210	CDS	sucD	NC_014910.1	4467583	4468476	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate--CoA ligase subunit alpha	complement(4467583..4468476)	Alicycliphilus denitrificans BC	
ALIDE_RS21215	CDS	sucC	NC_014910.1	4468498	4469658	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-forming succinate--CoA ligase subunit beta	complement(4468498..4469658)	Alicycliphilus denitrificans BC	
ALIDE_RS21220	CDS	argC	NC_014910.1	4469833	4470765	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-gamma-glutamyl-phosphate reductase	4469833..4470765	Alicycliphilus denitrificans BC	
ALIDE_RS21225	CDS	dprA	NC_014910.1	4470874	4472013	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-processing protein DprA	complement(4470874..4472013)	Alicycliphilus denitrificans BC	
ALIDE_RS21230	CDS	ALIDE_RS21230	NC_014910.1	4472037	4473230	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysM domain-containing protein	complement(4472037..4473230)	Alicycliphilus denitrificans BC	
ALIDE_RS21235	CDS	def	NC_014910.1	4473451	4473966	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide deformylase	4473451..4473966	Alicycliphilus denitrificans BC	
ALIDE_RS21240	CDS	ALIDE_RS21240	NC_014910.1	4473963	4474448	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4473963..4474448	Alicycliphilus denitrificans BC	
ALIDE_RS21245	CDS	ALIDE_RS21245	NC_014910.1	4474459	4475514	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA formyltransferase	4474459..4475514	Alicycliphilus denitrificans BC	
ALIDE_RS21250	CDS	ALIDE_RS21250	NC_014910.1	4475511	4476260	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AzlC family ABC transporter permease	4475511..4476260	Alicycliphilus denitrificans BC	
ALIDE_RS21255	CDS	ALIDE_RS21255	NC_014910.1	4476257	4476592	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AzlD domain-containing protein	4476257..4476592	Alicycliphilus denitrificans BC	
ALIDE_RS21260	CDS	ALIDE_RS21260	NC_014910.1	4476663	4477856	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate kinase	4476663..4477856	Alicycliphilus denitrificans BC	
ALIDE_RS21265	CDS	ALIDE_RS21265	NC_014910.1	4478016	4478702	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4478016..4478702	Alicycliphilus denitrificans BC	
ALIDE_RS21270	CDS	ALIDE_RS21270	NC_014910.1	4478699	4479253	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FlgO family outer membrane protein	4478699..4479253	Alicycliphilus denitrificans BC	
ALIDE_RS21275	CDS	ALIDE_RS21275	NC_014910.1	4479367	4480248	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	complement(4479367..4480248)	Alicycliphilus denitrificans BC	
ALIDE_RS21280	CDS	pyrF	NC_014910.1	4480298	4481122	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; orotidine-5'-phosphate decarboxylase	4480298..4481122	Alicycliphilus denitrificans BC	
ALIDE_RS21285	CDS	ALIDE_RS21285	NC_014910.1	4481139	4482035	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	4481139..4482035	Alicycliphilus denitrificans BC	
ALIDE_RS21290	CDS	ALIDE_RS21290	NC_014910.1	4482155	4483147	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	4482155..4483147	Alicycliphilus denitrificans BC	
ALIDE_RS21295	CDS	ALIDE_RS21295	NC_014910.1	4483144	4484118	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylglutamate desuccinylase/aspartoacylase family protein	4483144..4484118	Alicycliphilus denitrificans BC	
ALIDE_RS21300	CDS	ALIDE_RS21300	NC_014910.1	4484248	4486215	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein	4484248..4486215	Alicycliphilus denitrificans BC	
ALIDE_RS21305	CDS	uvrA	NC_014910.1	4486250	4489225	R	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit UvrA	complement(4486250..>4489225)	Alicycliphilus denitrificans BC	
ALIDE_RS21310	CDS	ALIDE_RS21310	NC_014910.1	4489501	4490679	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter	4489501..4490679	Alicycliphilus denitrificans BC	
ALIDE_RS21315	CDS	ssb	NC_014910.1	4490822	4491355	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein	4490822..4491355	Alicycliphilus denitrificans BC	
ALIDE_RS21320	CDS	ALIDE_RS21320	NC_014910.1	4491490	4492338	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	4491490..4492338	Alicycliphilus denitrificans BC	
ALIDE_RS21325	CDS	ALIDE_RS21325	NC_014910.1	4492348	4493529	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	complement(4492348..4493529)	Alicycliphilus denitrificans BC	
ALIDE_RS21330	CDS	ALIDE_RS21330	NC_014910.1	4493540	4494523	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(4493540..4494523)	Alicycliphilus denitrificans BC	
ALIDE_RS21335	CDS	ALIDE_RS21335	NC_014910.1	4494558	4495001	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PaaI family thioesterase	complement(4494558..4495001)	Alicycliphilus denitrificans BC	
ALIDE_RS21340	CDS	ALIDE_RS21340	NC_014910.1	4495017	4495994	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(4495017..4495994)	Alicycliphilus denitrificans BC	
ALIDE_RS21345	CDS	ALIDE_RS21345	NC_014910.1	4496026	4496793	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose 1-dehydrogenase	complement(4496026..4496793)	Alicycliphilus denitrificans BC	
ALIDE_RS21350	CDS	ALIDE_RS21350	NC_014910.1	4496823	4497305	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase N-terminal domain-containing protein	complement(4496823..4497305)	Alicycliphilus denitrificans BC	
ALIDE_RS21355	CDS	ALIDE_RS21355	NC_014910.1	4497326	4498474	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(4497326..4498474)	Alicycliphilus denitrificans BC	
ALIDE_RS21360	CDS	ALIDE_RS21360	NC_014910.1	4498482	4499726	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CaiB/BaiF CoA-transferase family protein	complement(4498482..4499726)	Alicycliphilus denitrificans BC	
ALIDE_RS21365	CDS	badI	NC_014910.1	4499931	4500713	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-ketocyclohexanecarboxyl-CoA hydrolase	4499931..4500713	Alicycliphilus denitrificans BC	
ALIDE_RS21370	CDS	ALIDE_RS21370	NC_014910.1	4500874	4502535	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate permease	complement(4500874..4502535)	Alicycliphilus denitrificans BC	
ALIDE_RS21375	CDS	mnmA	NC_014910.1	4502775	4503896	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA 2-thiouridine(34) synthase MnmA	complement(4502775..4503896)	Alicycliphilus denitrificans BC	
ALIDE_RS21380	CDS	ALIDE_RS21380	NC_014910.1	4503893	4504834	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(4503893..4504834)	Alicycliphilus denitrificans BC	
ALIDE_RS21385	CDS	ALIDE_RS21385	NC_014910.1	4504938	4506026	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-oxalomesaconate tautomerase	4504938..4506026	Alicycliphilus denitrificans BC	
ALIDE_RS21390	CDS	ALIDE_RS21390	NC_014910.1	4506079	4507068	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	4506079..4507068	Alicycliphilus denitrificans BC	
ALIDE_RS21395	CDS	ALIDE_RS21395	NC_014910.1	4507090	4508175	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; porin	4507090..4508175	Alicycliphilus denitrificans BC	
ALIDE_RS21400	CDS	ALIDE_RS21400	NC_014910.1	4508253	4509197	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	4508253..4509197	Alicycliphilus denitrificans BC	
ALIDE_RS21405	CDS	tcuA	NC_014910.1	4509435	4510871	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent tricarballylate dehydrogenase TcuA	4509435..4510871	Alicycliphilus denitrificans BC	
ALIDE_RS21410	CDS	tcuB	NC_014910.1	4510858	4512045	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tricarballylate utilization 4Fe-4S protein TcuB	4510858..4512045	Alicycliphilus denitrificans BC	
ALIDE_RS21415	CDS	ALIDE_RS21415	NC_014910.1	4512131	4513108	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	4512131..4513108	Alicycliphilus denitrificans BC	
ALIDE_RS21420	CDS	ALIDE_RS21420	NC_014910.1	4513151	4514827	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sigma-54-dependent Fis family transcriptional regulator	complement(4513151..4514827)	Alicycliphilus denitrificans BC	
ALIDE_RS21425	CDS	ALIDE_RS21425	NC_014910.1	4514989	4516536	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxyl transferase domain-containing protein	4514989..4516536	Alicycliphilus denitrificans BC	
ALIDE_RS21430	CDS	ALIDE_RS21430	NC_014910.1	4516566	4517576	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	4516566..4517576	Alicycliphilus denitrificans BC	
ALIDE_RS21435	CDS	ALIDE_RS21435	NC_014910.1	4517586	4519664	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate--CoA ligase family protein	4517586..4519664	Alicycliphilus denitrificans BC	
ALIDE_RS21440	CDS	ALIDE_RS21440	NC_014910.1	4519661	4521028	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin carboxylase N-terminal domain-containing protein	4519661..4521028	Alicycliphilus denitrificans BC	
ALIDE_RS21445	CDS	ALIDE_RS21445	NC_014910.1	4521040	4521252	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	4521040..4521252	Alicycliphilus denitrificans BC	
ALIDE_RS21450	CDS	ALIDE_RS21450	NC_014910.1	4521249	4521683	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PaaI family thioesterase	4521249..4521683	Alicycliphilus denitrificans BC	
ALIDE_RS21455	CDS	ALIDE_RS21455	NC_014910.1	4521710	4522195	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase	complement(4521710..4522195)	Alicycliphilus denitrificans BC	
ALIDE_RS21460	CDS	ALIDE_RS21460	NC_014910.1	4522343	4522675	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2946 family protein	4522343..4522675	Alicycliphilus denitrificans BC	
ALIDE_RS21465	CDS	ALIDE_RS21465	NC_014910.1	4522785	4524902	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent copper receptor	4522785..4524902	Alicycliphilus denitrificans BC	
ALIDE_RS21470	CDS	ALIDE_RS21470	NC_014910.1	4525158	4525586	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PaaI family thioesterase	4525158..4525586	Alicycliphilus denitrificans BC	
ALIDE_RS21475	CDS	ALIDE_RS21475	NC_014910.1	4525636	4526514	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	4525636..4526514	Alicycliphilus denitrificans BC	
ALIDE_RS21480	CDS	ALIDE_RS21480	NC_014910.1	4526549	4527526	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate-binding protein	complement(4526549..4527526)	Alicycliphilus denitrificans BC	
ALIDE_RS21485	CDS	ALIDE_RS21485	NC_014910.1	4527562	4528755	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	complement(4527562..4528755)	Alicycliphilus denitrificans BC	
ALIDE_RS21490	CDS	ALIDE_RS21490	NC_014910.1	4528757	4529896	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MaoC family dehydratase N-terminal domain-containing protein	complement(4528757..4529896)	Alicycliphilus denitrificans BC	
ALIDE_RS21495	CDS	ALIDE_RS21495	NC_014910.1	4529936	4531486	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA synthetase	complement(4529936..4531486)	Alicycliphilus denitrificans BC	
ALIDE_RS21500	CDS	ALIDE_RS21500	NC_014910.1	4531733	4532440	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; riboflavin synthase	complement(4531733..4532440)	Alicycliphilus denitrificans BC	
ALIDE_RS21505	CDS	ALIDE_RS21505	NC_014910.1	4532570	4533184	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysE family translocator	4532570..4533184	Alicycliphilus denitrificans BC	
ALIDE_RS21510	CDS	ALIDE_RS21510	NC_014910.1	4533191	4534564	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase	complement(4533191..4534564)	Alicycliphilus denitrificans BC	
ALIDE_RS21515	CDS	ALIDE_RS21515	NC_014910.1	4534817	4535494	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator transcription factor	complement(4534817..4535494)	Alicycliphilus denitrificans BC	
ALIDE_RS21520	CDS	ALIDE_RS21520	NC_014910.1	4535494	4535811	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY domain-containing protein	complement(4535494..4535811)	Alicycliphilus denitrificans BC	
ALIDE_RS21525	CDS	ALIDE_RS21525	NC_014910.1	4535950	4536261	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY domain-containing protein	4535950..4536261	Alicycliphilus denitrificans BC	
ALIDE_RS21530	CDS	ALIDE_RS21530	NC_014910.1	4536295	4537677	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric reductase-like transmembrane domain-containing protein	4536295..4537677	Alicycliphilus denitrificans BC	
ALIDE_RS21535	CDS	ALIDE_RS21535	NC_014910.1	4537753	4538307	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome b/b6 domain-containing protein	4537753..4538307	Alicycliphilus denitrificans BC	
ALIDE_RS21540	CDS	ALIDE_RS21540	NC_014910.1	4538356	4538724	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY domain-containing protein	4538356..4538724	Alicycliphilus denitrificans BC	
ALIDE_RS21545	CDS	ALIDE_RS21545	NC_014910.1	4538747	4539226	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2271 domain-containing protein	4538747..4539226	Alicycliphilus denitrificans BC	
ALIDE_RS21550	CDS	ALIDE_RS21550	NC_014910.1	4539229	4541433	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; PepSY domain-containing protein	4539229..4541433	Alicycliphilus denitrificans BC	
ALIDE_RS21555	CDS	ALIDE_RS21555	NC_014910.1	4541414	4542391	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD:protein FMN transferase	4541414..4542391	Alicycliphilus denitrificans BC	
ALIDE_RS21560	CDS	ALIDE_RS21560	NC_014910.1	4542493	4542798	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4542493..4542798	Alicycliphilus denitrificans BC	
ALIDE_RS21565	CDS	ALIDE_RS21565	NC_014910.1	4542814	4543281	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4542814..4543281)	Alicycliphilus denitrificans BC	
ALIDE_RS21570	CDS	ALIDE_RS21570	NC_014910.1	4543353	4545902	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cation-translocating P-type ATPase	4543353..4545902	Alicycliphilus denitrificans BC	
ALIDE_RS24845	CDS	ALIDE_RS24845	NC_014910.1	4546310	4546513	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter substrate-binding domain-containing protein	4546310..>4546513	Alicycliphilus denitrificans BC	
ALIDE_RS24850	CDS	ALIDE_RS24850	NC_014910.1	4546575	4546898	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	4546575..4546898	Alicycliphilus denitrificans BC	
ALIDE_RS24855	CDS	ALIDE_RS24855	NC_014910.1	4547070	4547405	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; GGDEF domain-containing protein	4547070..>4547405	Alicycliphilus denitrificans BC	
ALIDE_RS21580	CDS	ALIDE_RS21580	NC_014910.1	4547583	4548677	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; nitronate monooxygenase	complement(4547583..4548677)	Alicycliphilus denitrificans BC	
ALIDE_RS21585	CDS	ALIDE_RS21585	NC_014910.1	4548679	4549650	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(4548679..4549650)	Alicycliphilus denitrificans BC	
ALIDE_RS21590	CDS	ALIDE_RS21590	NC_014910.1	4549680	4550834	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(4549680..4550834)	Alicycliphilus denitrificans BC	
ALIDE_RS21595	CDS	ALIDE_RS21595	NC_014910.1	4550853	4551662	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	complement(4550853..4551662)	Alicycliphilus denitrificans BC	
ALIDE_RS24540	CDS	ALIDE_RS24540	NC_014910.1	4551678	4551833	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(4551678..4551833)	Alicycliphilus denitrificans BC	
ALIDE_RS21600	CDS	ALIDE_RS21600	NC_014910.1	4551981	4553192	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	4551981..4553192	Alicycliphilus denitrificans BC	
ALIDE_RS21605	CDS	ALIDE_RS21605	NC_014910.1	4553210	4554211	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; YhdH/YhfP family quinone oxidoreductase	4553210..4554211	Alicycliphilus denitrificans BC	
ALIDE_RS24285	CDS	ALIDE_RS24285	NC_014910.1	4554208	4554423	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	4554208..4554423	Alicycliphilus denitrificans BC	
ALIDE_RS21610	CDS	ALIDE_RS21610	NC_014910.1	4554441	4555673	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase family protein	complement(4554441..4555673)	Alicycliphilus denitrificans BC	
ALIDE_RS21615	CDS	ALIDE_RS21615	NC_014910.1	4555687	4556673	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	complement(4555687..4556673)	Alicycliphilus denitrificans BC	
ALIDE_RS21620	CDS	ALIDE_RS21620	NC_014910.1	4556711	4557571	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator	complement(4556711..4557571)	Alicycliphilus denitrificans BC	
ALIDE_RS21625	CDS	ALIDE_RS21625	NC_014910.1	4557656	4558891	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA transferase	4557656..4558891	Alicycliphilus denitrificans BC	
ALIDE_RS21630	CDS	ALIDE_RS21630	NC_014910.1	4558888	4559829	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(4558888..4559829)	Alicycliphilus denitrificans BC	
ALIDE_RS21635	CDS	ALIDE_RS21635	NC_014910.1	4559936	4560922	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tripartite tricarboxylate transporter substrate binding protein	4559936..4560922	Alicycliphilus denitrificans BC	
ALIDE_RS21640	CDS	ggt	NC_014910.1	4560934	4562553	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyltransferase	4560934..4562553	Alicycliphilus denitrificans BC	
ALIDE_RS21645	CDS	ALIDE_RS21645	NC_014910.1	4562569	4563246	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4562569..4563246)	Alicycliphilus denitrificans BC	
ALIDE_RS21650	CDS	ALIDE_RS21650	NC_014910.1	4563384	4565051	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase	complement(4563384..4565051)	Alicycliphilus denitrificans BC	
ALIDE_RS21655	CDS	ALIDE_RS21655	NC_014910.1	4565051	4566604	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; polyamine aminopropyltransferase	complement(4565051..4566604)	Alicycliphilus denitrificans BC	
ALIDE_RS21660	CDS	ALIDE_RS21660	NC_014910.1	4566618	4566839	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF350 domain-containing protein	complement(4566618..4566839)	Alicycliphilus denitrificans BC	
ALIDE_RS21665	CDS	ALIDE_RS21665	NC_014910.1	4566876	4568360	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4178 domain-containing protein	complement(4566876..4568360)	Alicycliphilus denitrificans BC	
ALIDE_RS21670	CDS	ALIDE_RS21670	NC_014910.1	4568429	4569466	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SPFH domain-containing protein	complement(4568429..4569466)	Alicycliphilus denitrificans BC	
ALIDE_RS21675	CDS	ALIDE_RS21675	NC_014910.1	4569635	4569943	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2061 domain-containing protein	4569635..4569943	Alicycliphilus denitrificans BC	
ALIDE_RS21680	CDS	ALIDE_RS21680	NC_014910.1	4569865	4570188	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod C-terminal domain-containing protein	complement(4569865..4570188)	Alicycliphilus denitrificans BC	
ALIDE_RS21685	CDS	ALIDE_RS21685	NC_014910.1	4570250	4571194	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator	complement(4570250..4571194)	Alicycliphilus denitrificans BC	
ALIDE_RS21690	CDS	ALIDE_RS21690	NC_014910.1	4571286	4572641	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate aminotransferase family protein	4571286..4572641	Alicycliphilus denitrificans BC	
ALIDE_RS21695	CDS	ALIDE_RS21695	NC_014910.1	4572711	4574228	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA-acylating methylmalonate-semialdehyde dehydrogenase	4572711..4574228	Alicycliphilus denitrificans BC	
ALIDE_RS21700	CDS	ALIDE_RS21700	NC_014910.1	4574320	4575453	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor domain-containing diguanylate cyclase	4574320..4575453	Alicycliphilus denitrificans BC	
ALIDE_RS21705	CDS	ALIDE_RS21705	NC_014910.1	4575466	4576305	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; FadR/GntR family transcriptional regulator	complement(4575466..4576305)	Alicycliphilus denitrificans BC	
ALIDE_RS21710	CDS	ALIDE_RS21710	NC_014910.1	4576527	4577732	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	4576527..4577732	Alicycliphilus denitrificans BC	
ALIDE_RS21715	CDS	ALIDE_RS21715	NC_014910.1	4577767	4578627	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	4577767..4578627	Alicycliphilus denitrificans BC	
ALIDE_RS21720	CDS	ALIDE_RS21720	NC_014910.1	4578633	4579628	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease	4578633..4579628	Alicycliphilus denitrificans BC	
ALIDE_RS21725	CDS	ALIDE_RS21725	NC_014910.1	4579625	4580407	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	4579625..4580407	Alicycliphilus denitrificans BC	
ALIDE_RS21730	CDS	ALIDE_RS21730	NC_014910.1	4580404	4581180	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein	4580404..4581180	Alicycliphilus denitrificans BC	
ALIDE_RS21735	CDS	ALIDE_RS21735	NC_014910.1	4581194	4582450	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Zn-dependent hydrolase	4581194..4582450	Alicycliphilus denitrificans BC	
ALIDE_RS21740	CDS	ALIDE_RS21740	NC_014910.1	4582447	4583913	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; M81 family metallopeptidase	4582447..4583913	Alicycliphilus denitrificans BC	
ALIDE_RS21745	CDS	ALIDE_RS21745	NC_014910.1	4584061	4586370	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; NADP-dependent malic enzyme	4584061..4586370	Alicycliphilus denitrificans BC	
ALIDE_RS21750	CDS	ALIDE_RS21750	NC_014910.1	4586504	4586908	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease	4586504..4586908	Alicycliphilus denitrificans BC	
ALIDE_RS21755	CDS	ALIDE_RS21755	NC_014910.1	4587049	4587474	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; barstar family protein	4587049..4587474	Alicycliphilus denitrificans BC	
ALIDE_RS21760	CDS	rsmA	NC_014910.1	4587704	4588471	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	complement(4587704..4588471)	Alicycliphilus denitrificans BC	
ALIDE_RS21765	CDS	ALIDE_RS21765	NC_014910.1	4588468	4589883	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidylprolyl isomerase	complement(4588468..4589883)	Alicycliphilus denitrificans BC	
ALIDE_RS21770	CDS	ALIDE_RS21770	NC_014910.1	4589917	4592361	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS-assembly protein LptD	complement(4589917..4592361)	Alicycliphilus denitrificans BC	
ALIDE_RS21775	CDS	ALIDE_RS21775	NC_014910.1	4592435	4593550	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransferase	4592435..4593550	Alicycliphilus denitrificans BC	
ALIDE_RS21780	CDS	ALIDE_RS21780	NC_014910.1	4593618	4594331	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA (uracil(1498)-N(3))-methyltransferase	4593618..4594331	Alicycliphilus denitrificans BC	
ALIDE_RS21785	CDS	ALIDE_RS21785	NC_014910.1	4594331	4595665	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4594331..4595665	Alicycliphilus denitrificans BC	
ALIDE_RS21790	CDS	ALIDE_RS21790	NC_014910.1	4595658	4596362	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	4595658..4596362	Alicycliphilus denitrificans BC	
ALIDE_RS21795	CDS	ALIDE_RS21795	NC_014910.1	4596363	4599200	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	4596363..4599200	Alicycliphilus denitrificans BC	
ALIDE_RS21800	CDS	ALIDE_RS21800	NC_014910.1	4599273	4600736	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M20 family metallopeptidase	complement(4599273..4600736)	Alicycliphilus denitrificans BC	
ALIDE_RS21805	CDS	ALIDE_RS21805	NC_014910.1	4600810	4601997	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; GGDEF domain-containing protein	complement(4600810..4601997)	Alicycliphilus denitrificans BC	
ALIDE_RS21810	CDS	ALIDE_RS21810	NC_014910.1	4602173	4603015	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; helix-turn-helix domain-containing protein	complement(4602173..4603015)	Alicycliphilus denitrificans BC	
ALIDE_RS21815	CDS	ALIDE_RS21815	NC_014910.1	4603014	4604168	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; P63C domain-containing protein	4603014..4604168	Alicycliphilus denitrificans BC	
ALIDE_RS24485	CDS	ALIDE_RS24485	NC_014910.1	4604170	4604316	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(4604170..4604316)	Alicycliphilus denitrificans BC	
ALIDE_RS21820	CDS	metW	NC_014910.1	4604461	4605045	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine biosynthesis protein MetW	complement(4604461..4605045)	Alicycliphilus denitrificans BC	
ALIDE_RS21825	CDS	ALIDE_RS21825	NC_014910.1	4605042	4606172	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; homoserine O-acetyltransferase	complement(4605042..4606172)	Alicycliphilus denitrificans BC	
ALIDE_RS21830	CDS	ALIDE_RS21830	NC_014910.1	4606305	4606883	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TMEM165/GDT1 family protein	complement(4606305..4606883)	Alicycliphilus denitrificans BC	
ALIDE_RS21835	CDS	ALIDE_RS21835	NC_014910.1	4607355	4607705	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein	4607355..4607705	Alicycliphilus denitrificans BC	
ALIDE_RS21840	CDS	ALIDE_RS21840	NC_014910.1	4607941	4608375	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein	4607941..4608375	Alicycliphilus denitrificans BC	
ALIDE_RS21845	CDS	ALIDE_RS21845	NC_014910.1	4608462	4609256	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family oxidoreductase	complement(4608462..4609256)	Alicycliphilus denitrificans BC	
ALIDE_RS21850	CDS	lptC	NC_014910.1	4609267	4609908	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS export ABC transporter periplasmic protein LptC	complement(4609267..4609908)	Alicycliphilus denitrificans BC	
ALIDE_RS21855	CDS	ALIDE_RS21855	NC_014910.1	4609905	4610477	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HAD hydrolase family protein	complement(4609905..4610477)	Alicycliphilus denitrificans BC	
ALIDE_RS21860	CDS	ALIDE_RS21860	NC_014910.1	4610477	4611478	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; KpsF/GutQ family sugar-phosphate isomerase	complement(4610477..4611478)	Alicycliphilus denitrificans BC	
ALIDE_RS21865	CDS	ALIDE_RS21865	NC_014910.1	4611527	4613512	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; monovalent cation:proton antiporter-2 (CPA2) family protein	4611527..4613512	Alicycliphilus denitrificans BC	
ALIDE_RS21870	CDS	ALIDE_RS21870	NC_014910.1	4613550	4614104	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine phosphoribosyltransferase	4613550..4614104	Alicycliphilus denitrificans BC	
ALIDE_RS21875	CDS	ALIDE_RS21875	NC_014910.1	4614151	4615038	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4614151..4615038)	Alicycliphilus denitrificans BC	
ALIDE_RS21880	CDS	ALIDE_RS21880	NC_014910.1	4615161	4615646	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic nucleotide-binding domain-containing protein	complement(4615161..4615646)	Alicycliphilus denitrificans BC	
ALIDE_RS21885	CDS	mnmE	NC_014910.1	4615729	4617126	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	complement(4615729..4617126)	Alicycliphilus denitrificans BC	
ALIDE_RS21890	CDS	ALIDE_RS21890	NC_014910.1	4617204	4618091	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein	complement(4617204..4618091)	Alicycliphilus denitrificans BC	
ALIDE_RS21895	CDS	ALIDE_RS21895	NC_014910.1	4618346	4619557	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; D-amino acid dehydrogenase	4618346..4619557	Alicycliphilus denitrificans BC	
ALIDE_RS21900	CDS	ALIDE_RS21900	NC_014910.1	4619561	4620466	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR substrate-binding domain-containing protein	complement(4619561..4620466)	Alicycliphilus denitrificans BC	
ALIDE_RS21905	CDS	ALIDE_RS21905	NC_014910.1	4620494	4621234	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid racemase	complement(4620494..4621234)	Alicycliphilus denitrificans BC	
ALIDE_RS21910	CDS	ALIDE_RS21910	NC_014910.1	4621231	4622049	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; M55 family metallopeptidase	complement(4621231..4622049)	Alicycliphilus denitrificans BC	
ALIDE_RS21915	CDS	ALIDE_RS21915	NC_014910.1	4622114	4623151	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; P1 family peptidase	complement(4622114..4623151)	Alicycliphilus denitrificans BC	
ALIDE_RS21920	CDS	gsiD	NC_014910.1	4623148	4624056	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter permease GsiD	complement(4623148..4624056)	Alicycliphilus denitrificans BC	
ALIDE_RS21925	CDS	gsiC	NC_014910.1	4624064	4624984	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter permease GsiC	complement(4624064..4624984)	Alicycliphilus denitrificans BC	
ALIDE_RS21930	CDS	gsiB	NC_014910.1	4625053	4626597	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter substrate-binding protein GsiB	complement(4625053..4626597)	Alicycliphilus denitrificans BC	
ALIDE_RS21935	CDS	ALIDE_RS21935	NC_014910.1	4626689	4628563	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; dipeptide ABC transporter ATP-binding protein	complement(4626689..4628563)	Alicycliphilus denitrificans BC	
ALIDE_RS21940	CDS	ALIDE_RS21940	NC_014910.1	4628580	4629578	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; isoaspartyl peptidase/L-asparaginase	complement(4628580..4629578)	Alicycliphilus denitrificans BC	
ALIDE_RS21945	CDS	ALIDE_RS21945	NC_014910.1	4629575	4630507	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; MurR/RpiR family transcriptional regulator	complement(4629575..4630507)	Alicycliphilus denitrificans BC	
ALIDE_RS24490	CDS	ALIDE_RS24490	NC_014910.1	4630718	4630849	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4630718..4630849)	Alicycliphilus denitrificans BC	
ALIDE_RS24860	CDS	ALIDE_RS24860	NC_014910.1	4630795	4631157	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(4630795..4631157)	Alicycliphilus denitrificans BC	
ALIDE_RS24960	CDS	ALIDE_RS24960	NC_014910.1	4631176	4631547	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(<4631176..4631547)	Alicycliphilus denitrificans BC	
ALIDE_RS24870	CDS	ALIDE_RS24870	NC_014910.1	4631501	4632433	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase dimerization/phospho-acceptor domain-containing protein	complement(<4631501..4632433)	Alicycliphilus denitrificans BC	
ALIDE_RS21960	CDS	ALIDE_RS21960	NC_014910.1	4632627	4634213	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein	complement(4632627..4634213)	Alicycliphilus denitrificans BC	
ALIDE_RS21965	CDS	yidC	NC_014910.1	4634321	4636015	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein insertase YidC	complement(4634321..4636015)	Alicycliphilus denitrificans BC	
ALIDE_RS21970	CDS	yidD	NC_014910.1	4636012	4636305	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein insertion efficiency factor YidD	complement(4636012..4636305)	Alicycliphilus denitrificans BC	
ALIDE_RS21975	CDS	ALIDE_RS21975	NC_014910.1	4636302	4636742	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease P protein component	complement(4636302..4636742)	Alicycliphilus denitrificans BC	
ALIDE_RS21980	CDS	rpmH	NC_014910.1	4636785	4636919	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L34	complement(4636785..4636919)	Alicycliphilus denitrificans BC	
ALIDE_RS21995	CDS	ALIDE_RS21995	NC_014908.1	187	1257	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; ParB/RepB/Spo0J family partition protein	complement(187..1257)	Alicycliphilus denitrificans BC	
ALIDE_RS22000	CDS	ALIDE_RS22000	NC_014908.1	1265	1969	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParA family protein	complement(1265..1969)	Alicycliphilus denitrificans BC	
ALIDE_RS23675	CDS	ALIDE_RS23675	NC_014908.1	3068	3346	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	3068..3346	Alicycliphilus denitrificans BC	
ALIDE_RS22005	CDS	ALIDE_RS22005	NC_014908.1	4303	4593	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; H-NS histone family protein	4303..4593	Alicycliphilus denitrificans BC	
ALIDE_RS22010	CDS	ALIDE_RS22010	NC_014908.1	4606	4926	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; H-NS histone family protein	4606..4926	Alicycliphilus denitrificans BC	
ALIDE_RS22015	CDS	ALIDE_RS22015	NC_014908.1	5025	5441	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	5025..5441	Alicycliphilus denitrificans BC	
ALIDE_RS22020	CDS	traD	NC_014908.1	5438	7261	D	Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugative transfer system coupling protein TraD	5438..7261	Alicycliphilus denitrificans BC	
ALIDE_RS22025	CDS	ALIDE_RS22025	NC_014908.1	7271	7879	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4400 domain-containing protein	7271..7879	Alicycliphilus denitrificans BC	
ALIDE_RS22030	CDS	ALIDE_RS22030	NC_014908.1	7843	8619	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; EAL domain protein	7843..8619	Alicycliphilus denitrificans BC	
ALIDE_RS22035	CDS	ALIDE_RS22035	NC_014908.1	8616	9077	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(8616..9077)	Alicycliphilus denitrificans BC	
ALIDE_RS23685	CDS	ALIDE_RS23685	NC_014908.1	9315	9821	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic transglycosylase domain-containing protein	9315..9821	Alicycliphilus denitrificans BC	
ALIDE_RS24290	CDS	ALIDE_RS24290	NC_014908.1	9825	13577	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	9825..13577	Alicycliphilus denitrificans BC	
ALIDE_RS24295	CDS	ALIDE_RS24295	NC_014908.1	13692	14285	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	13692..14285	Alicycliphilus denitrificans BC	
ALIDE_RS22050	CDS	traL	NC_014908.1	14282	14560	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV conjugative transfer system protein TraL	14282..14560	Alicycliphilus denitrificans BC	
ALIDE_RS22055	CDS	ALIDE_RS22055	NC_014908.1	14557	15333	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TraE/TraK family type IV conjugative transfer system protein	14557..15333	Alicycliphilus denitrificans BC	
ALIDE_RS22060	CDS	ALIDE_RS22060	NC_014908.1	15342	16475	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type-F conjugative transfer system secretin TraK	15342..16475	Alicycliphilus denitrificans BC	
ALIDE_RS22065	CDS	ALIDE_RS22065	NC_014908.1	16472	17902	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TraB/VirB10 family protein	16472..17902	Alicycliphilus denitrificans BC	
ALIDE_RS23690	CDS	traV	NC_014908.1	17908	18417	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV conjugative transfer system lipoprotein TraV	17908..18417	Alicycliphilus denitrificans BC	
ALIDE_RS22075	CDS	traA	NC_014908.1	18453	18788	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TraA family conjugative transfer protein	18453..18788	Alicycliphilus denitrificans BC	
ALIDE_RS22080	CDS	traC	NC_014908.1	18799	21243	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV secretion system protein TraC	18799..21243	Alicycliphilus denitrificans BC	
ALIDE_RS22085	CDS	ALIDE_RS22085	NC_014908.1	21251	21745	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	21251..21745	Alicycliphilus denitrificans BC	
ALIDE_RS22090	CDS	lepB	NC_014908.1	21802	22407	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; signal peptidase I	21802..22407	Alicycliphilus denitrificans BC	
ALIDE_RS22095	CDS	ALIDE_RS22095	NC_014908.1	22370	23554	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TrbC family F-type conjugative pilus assembly protein	22370..23554	Alicycliphilus denitrificans BC	
ALIDE_RS22100	CDS	ALIDE_RS22100	NC_014908.1	23554	24708	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TraU family protein	23554..24708	Alicycliphilus denitrificans BC	
ALIDE_RS23695	CDS	traN	NC_014908.1	24723	28715	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TraN	24723..28715	Alicycliphilus denitrificans BC	
ALIDE_RS22110	CDS	ALIDE_RS22110	NC_014908.1	29218	30111	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	29218..30111	Alicycliphilus denitrificans BC	
ALIDE_RS22115	CDS	traF	NC_014908.1	30099	31079	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TraF	30099..31079	Alicycliphilus denitrificans BC	
ALIDE_RS23700	CDS	ALIDE_RS23700	NC_014908.1	31082	32590	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TraH	31082..32590	Alicycliphilus denitrificans BC	
ALIDE_RS24495	CDS	ALIDE_RS24495	NC_014908.1	32599	38373	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TraG N-terminal domain-containing protein	32599..38373	Alicycliphilus denitrificans BC	
ALIDE_RS23710	CDS	ALIDE_RS23710	NC_014908.1	38484	39299	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tetratricopeptide repeat protein	38484..39299	Alicycliphilus denitrificans BC	
ALIDE_RS23715	CDS	ALIDE_RS23715	NC_014908.1	39372	40256	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; fibronectin type III domain-containing protein	39372..40256	Alicycliphilus denitrificans BC	
ALIDE_RS22135	CDS	istB	NC_014908.1	40306	41127	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21-like element helper ATPase IstB	complement(40306..41127)	Alicycliphilus denitrificans BC	
ALIDE_RS22140	CDS	istA	NC_014908.1	41124	42635	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21 family transposase	complement(41124..42635)	Alicycliphilus denitrificans BC	
ALIDE_RS22145	CDS	ALIDE_RS22145	NC_014908.1	42752	43462	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA cytosine methyltransferase	42752..43462	Alicycliphilus denitrificans BC	
ALIDE_RS22150	CDS	istA	NC_014908.1	43639	45165	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21 family transposase	43639..45165	Alicycliphilus denitrificans BC	
ALIDE_RS22155	CDS	istB	NC_014908.1	45155	45958	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21-like element ISThsp10 family helper ATPase IstB	45155..45958	Alicycliphilus denitrificans BC	
ALIDE_RS22160	CDS	ALIDE_RS22160	NC_014908.1	46273	47208	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	46273..47208	Alicycliphilus denitrificans BC	
ALIDE_RS22170	CDS	ALIDE_RS22170	NC_014908.1	47767	48147	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	47767..48147	Alicycliphilus denitrificans BC	
ALIDE_RS22175	CDS	ALIDE_RS22175	NC_014908.1	48419	49102	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	48419..49102	Alicycliphilus denitrificans BC	
ALIDE_RS23720	CDS	ALIDE_RS23720	NC_014908.1	49184	50155	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	49184..50155	Alicycliphilus denitrificans BC	
ALIDE_RS22190	CDS	ALIDE_RS22190	NC_014908.1	50331	51050	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	50331..51050	Alicycliphilus denitrificans BC	
ALIDE_RS22195	CDS	ALIDE_RS22195	NC_014908.1	51131	51385	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	51131..51385	Alicycliphilus denitrificans BC	
ALIDE_RS22200	CDS	ALIDE_RS22200	NC_014908.1	51382	51564	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	51382..51564	Alicycliphilus denitrificans BC	
ALIDE_RS22205	CDS	ALIDE_RS22205	NC_014908.1	51781	52095	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	51781..52095	Alicycliphilus denitrificans BC	
ALIDE_RS22210	CDS	ALIDE_RS22210	NC_014908.1	52105	52425	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	52105..52425	Alicycliphilus denitrificans BC	
ALIDE_RS22215	CDS	ALIDE_RS22215	NC_014908.1	52504	52965	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	52504..52965	Alicycliphilus denitrificans BC	
ALIDE_RS22220	CDS	ALIDE_RS22220	NC_014908.1	53214	53597	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	53214..53597	Alicycliphilus denitrificans BC	
ALIDE_RS23725	CDS	ALIDE_RS23725	NC_014908.1	53594	53842	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	53594..53842	Alicycliphilus denitrificans BC	
ALIDE_RS23730	CDS	ALIDE_RS23730	NC_014908.1	53915	54676	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	53915..54676	Alicycliphilus denitrificans BC	
ALIDE_RS23735	CDS	ALIDE_RS23735	NC_014908.1	54843	55154	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	54843..55154	Alicycliphilus denitrificans BC	
ALIDE_RS22230	CDS	ALIDE_RS22230	NC_014908.1	55151	55882	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotidyl transferase AbiEii/AbiGii toxin family protein	55151..55882	Alicycliphilus denitrificans BC	
ALIDE_RS23740	CDS	ALIDE_RS23740	NC_014908.1	55886	56215	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	55886..56215	Alicycliphilus denitrificans BC	
ALIDE_RS22235	CDS	ALIDE_RS22235	NC_014908.1	56208	56780	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF6036 family nucleotidyltransferase	56208..56780	Alicycliphilus denitrificans BC	
ALIDE_RS22240	CDS	ALIDE_RS22240	NC_014908.1	56800	57459	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific integrase	56800..57459	Alicycliphilus denitrificans BC	
ALIDE_RS22245	CDS	ALIDE_RS22245	NC_014908.1	57456	57671	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; helix-turn-helix transcriptional regulator	57456..57671	Alicycliphilus denitrificans BC	
ALIDE_RS24500	CDS	ALIDE_RS24500	NC_014908.1	57783	57953	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	57783..57953	Alicycliphilus denitrificans BC	
ALIDE_RS24315	CDS	ALIDE_RS24315	NC_014908.1	58297	58575	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	58297..58575	Alicycliphilus denitrificans BC	
ALIDE_RS22255	CDS	ALIDE_RS22255	NC_014908.1	58591	58983	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	58591..58983	Alicycliphilus denitrificans BC	
ALIDE_RS22260	CDS	ALIDE_RS22260	NC_014908.1	58998	59384	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	58998..59384	Alicycliphilus denitrificans BC	
ALIDE_RS24320	CDS	ALIDE_RS24320	NC_014908.1	59395	59661	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	59395..59661	Alicycliphilus denitrificans BC	
ALIDE_RS23745	CDS	ALIDE_RS23745	NC_014908.1	59673	59894	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	59673..59894	Alicycliphilus denitrificans BC	
ALIDE_RS22265	CDS	ALIDE_RS22265	NC_014908.1	59911	60132	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	59911..60132	Alicycliphilus denitrificans BC	
ALIDE_RS24325	CDS	ALIDE_RS24325	NC_014908.1	60142	60399	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	60142..60399	Alicycliphilus denitrificans BC	
ALIDE_RS22270	CDS	ALIDE_RS22270	NC_014908.1	60423	61022	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	60423..61022	Alicycliphilus denitrificans BC	
ALIDE_RS22275	CDS	ALIDE_RS22275	NC_014908.1	61034	61258	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	61034..61258	Alicycliphilus denitrificans BC	
ALIDE_RS22280	CDS	ALIDE_RS22280	NC_014908.1	61314	61682	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	61314..61682	Alicycliphilus denitrificans BC	
ALIDE_RS23750	CDS	ALIDE_RS23750	NC_014908.1	61700	61897	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	61700..61897	Alicycliphilus denitrificans BC	
ALIDE_RS22285	CDS	ALIDE_RS22285	NC_014908.1	62125	62394	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	62125..62394	Alicycliphilus denitrificans BC	
ALIDE_RS23755	CDS	ALIDE_RS23755	NC_014908.1	62409	62705	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	62409..62705	Alicycliphilus denitrificans BC	
ALIDE_RS24330	CDS	ALIDE_RS24330	NC_014908.1	62715	62978	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	62715..62978	Alicycliphilus denitrificans BC	
ALIDE_RS24505	CDS	ALIDE_RS24505	NC_014908.1	63071	63235	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	63071..63235	Alicycliphilus denitrificans BC	
ALIDE_RS22295	CDS	ALIDE_RS22295	NC_014908.1	63248	63625	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	63248..63625	Alicycliphilus denitrificans BC	
ALIDE_RS22300	CDS	ALIDE_RS22300	NC_014908.1	63637	63891	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	63637..63891	Alicycliphilus denitrificans BC	
ALIDE_RS24335	CDS	ALIDE_RS24335	NC_014908.1	63905	64270	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	63905..64270	Alicycliphilus denitrificans BC	
ALIDE_RS22305	CDS	ALIDE_RS22305	NC_014908.1	64281	64520	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	64281..64520	Alicycliphilus denitrificans BC	
ALIDE_RS22310	CDS	ALIDE_RS22310	NC_014908.1	64537	64806	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	64537..64806	Alicycliphilus denitrificans BC	
ALIDE_RS23760	CDS	ALIDE_RS23760	NC_014908.1	64822	65058	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF3331 domain-containing protein	64822..65058	Alicycliphilus denitrificans BC	
ALIDE_RS24510	CDS	ALIDE_RS24510	NC_014908.1	65154	65318	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	65154..65318	Alicycliphilus denitrificans BC	
ALIDE_RS22315	CDS	ALIDE_RS22315	NC_014908.1	66153	67667	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS66 family transposase	complement(66153..67667)	Alicycliphilus denitrificans BC	
ALIDE_RS22320	CDS	tnpB	NC_014908.1	67750	68082	R	TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS66 family insertion sequence element accessory protein TnpB	complement(67750..68082)	Alicycliphilus denitrificans BC	
ALIDE_RS22325	CDS	ALIDE_RS22325	NC_014908.1	68079	68507	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase	complement(68079..68507)	Alicycliphilus denitrificans BC	
ALIDE_RS23765	CDS	ALIDE_RS23765	NC_014908.1	68540	69163	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipase D family protein	68540..69163	Alicycliphilus denitrificans BC	
ALIDE_RS23770	CDS	ALIDE_RS23770	NC_014908.1	69216	69581	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	69216..69581	Alicycliphilus denitrificans BC	
ALIDE_RS22330	CDS	ALIDE_RS22330	NC_014908.1	69620	70567	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; S49 family peptidase	69620..70567	Alicycliphilus denitrificans BC	
ALIDE_RS22335	CDS	ALIDE_RS22335	NC_014908.1	70657	70860	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	70657..70860	Alicycliphilus denitrificans BC	
ALIDE_RS22340	CDS	ALIDE_RS22340	NC_014908.1	70956	71171	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(70956..71171)	Alicycliphilus denitrificans BC	
ALIDE_RS23775	CDS	ALIDE_RS23775	NC_014908.1	71289	71621	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(71289..71621)	Alicycliphilus denitrificans BC	
ALIDE_RS22350	CDS	ALIDE_RS22350	NC_014908.1	71767	72951	R	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; Tn3-like element IS1071 family transposase	complement(71767..>72951)	Alicycliphilus denitrificans BC	
ALIDE_RS22355	CDS	ALIDE_RS22355	NC_014908.1	72984	76013	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Tn3 family transposase	complement(72984..76013)	Alicycliphilus denitrificans BC	
ALIDE_RS22360	CDS	ALIDE_RS22360	NC_014908.1	76010	76602	R	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase family protein	complement(76010..76602)	Alicycliphilus denitrificans BC	
ALIDE_RS22365	CDS	ALIDE_RS22365	NC_014908.1	76841	77119	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	76841..77119	Alicycliphilus denitrificans BC	
ALIDE_RS22370	CDS	ALIDE_RS22370	NC_014908.1	77116	77400	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	77116..77400	Alicycliphilus denitrificans BC	
ALIDE_RS22375	CDS	ALIDE_RS22375	NC_014908.1	77807	78367	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; chlorite dismutase family protein	77807..78367	Alicycliphilus denitrificans BC	
ALIDE_RS23780	CDS	ALIDE_RS23780	NC_014908.1	78501	78857	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cupin domain-containing protein	78501..78857	Alicycliphilus denitrificans BC	
ALIDE_RS22380	CDS	ALIDE_RS22380	NC_014908.1	79354	80313	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; HPP family protein	79354..80313	Alicycliphilus denitrificans BC	
ALIDE_RS24515	CDS	ALIDE_RS24515	NC_014908.1	80412	80564	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	80412..80564	Alicycliphilus denitrificans BC	
ALIDE_RS22385	CDS	mobB	NC_014908.1	80638	81177	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-guanine dinucleotide biosynthesis protein B	complement(80638..81177)	Alicycliphilus denitrificans BC	
ALIDE_RS23785	CDS	ALIDE_RS23785	NC_014908.1	81247	81564	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; c-type cytochrome	complement(81247..81564)	Alicycliphilus denitrificans BC	
ALIDE_RS22395	CDS	clrC	NC_014908.1	81691	82410	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chlorate reductase subunit gamma	complement(81691..82410)	Alicycliphilus denitrificans BC	
ALIDE_RS22400	CDS	clrD	NC_014908.1	82407	82988	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chlorate reductase assembly chaperone protein ClrD	complement(82407..82988)	Alicycliphilus denitrificans BC	
ALIDE_RS22405	CDS	clrB	NC_014908.1	82985	83971	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chlorate reductase subunit beta	complement(82985..83971)	Alicycliphilus denitrificans BC	
ALIDE_RS22410	CDS	clrA	NC_014908.1	83982	86726	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; chlorate reductase subunit alpha	complement(83982..86726)	Alicycliphilus denitrificans BC	
ALIDE_RS22415	CDS	cld	NC_014908.1	87047	87904	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; chlorite dismutase	87047..87904	Alicycliphilus denitrificans BC	
ALIDE_RS22420	CDS	ALIDE_RS22420	NC_014908.1	88041	88328	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; pentapeptide MXKDX repeat protein	88041..88328	Alicycliphilus denitrificans BC	
ALIDE_RS23790	CDS	msrB	NC_014908.1	88334	88576	D	incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide-methionine (R)-S-oxide reductase MsrB	<88334..88576	Alicycliphilus denitrificans BC	
ALIDE_RS23795	CDS	ALIDE_RS23795	NC_014908.1	88688	89044	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cupin domain-containing protein	88688..89044	Alicycliphilus denitrificans BC	
ALIDE_RS22425	CDS	ALIDE_RS22425	NC_014908.1	89415	90386	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine-type recombinase/integrase	89415..90386	Alicycliphilus denitrificans BC	
ALIDE_RS22430	CDS	istB	NC_014908.1	90406	91161	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21-like element ISIde2 family helper ATPase IstB	complement(90406..91161)	Alicycliphilus denitrificans BC	
ALIDE_RS22435	CDS	istA	NC_014908.1	91181	92719	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21-like element ISIde2 family transposase	complement(91181..92719)	Alicycliphilus denitrificans BC	
ALIDE_RS22440	CDS	ALIDE_RS22440	NC_014908.1	93068	93919	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4158 domain-containing protein	complement(<93068..93919)	Alicycliphilus denitrificans BC	
ALIDE_RS22445	CDS	ALIDE_RS22445	NC_014908.1	94428	94760	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	94428..94760	Alicycliphilus denitrificans BC	
ALIDE_RS22450	CDS	ALIDE_RS22450	NC_014908.1	94890	96803	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine-type recombinase/integrase	complement(94890..96803)	Alicycliphilus denitrificans BC	
ALIDE_RS24345	CDS	ALIDE_RS24345	NC_014908.1	96879	97109	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(96879..97109)	Alicycliphilus denitrificans BC	
ALIDE_RS22455	CDS	ALIDE_RS22455	NC_014908.1	97121	97504	R	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	complement(97121..97504)	Alicycliphilus denitrificans BC	
ALIDE_RS22460	CDS	ALIDE_RS22460	NC_014908.1	97530	100289	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DEAD/DEAH box helicase family protein	complement(97530..100289)	Alicycliphilus denitrificans BC	
ALIDE_RS22465	CDS	ALIDE_RS22465	NC_014908.1	100286	102214	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific DNA-methyltransferase	complement(100286..102214)	Alicycliphilus denitrificans BC	
ALIDE_RS22470	CDS	ALIDE_RS22470	NC_014908.1	102214	102537	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system PemK/MazF family toxin	complement(102214..102537)	Alicycliphilus denitrificans BC	
ALIDE_RS23800	CDS	ALIDE_RS23800	NC_014908.1	102534	102755	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin MazE family protein	complement(102534..102755)	Alicycliphilus denitrificans BC	
ALIDE_RS22475	CDS	ALIDE_RS22475	NC_014908.1	102831	103667	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; restriction endonuclease	102831..103667	Alicycliphilus denitrificans BC	
ALIDE_RS22480	CDS	ALIDE_RS22480	NC_014908.1	103685	104056	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; HU family DNA-binding protein	complement(103685..104056)	Alicycliphilus denitrificans BC	
ALIDE_RS22485	CDS	ALIDE_RS22485	NC_014908.1	104214	104666	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; helix-turn-helix domain-containing protein	104214..104666	Alicycliphilus denitrificans BC	
ALIDE_RS22490	CDS	ALIDE_RS22490	NC_014908.1	104677	105234	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-finger-containing protein	complement(104677..105234)	Alicycliphilus denitrificans BC	
ALIDE_RS22495	CDS	ALIDE_RS22495	NC_014908.1	105502	107238	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; Tn3-like element IS1071 family transposase	105502..>107238	Alicycliphilus denitrificans BC	
ALIDE_RS23805	CDS	ALIDE_RS23805	NC_014908.1	107675	108031	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cupin domain-containing protein	complement(107675..108031)	Alicycliphilus denitrificans BC	
ALIDE_RS23810	CDS	ALIDE_RS23810	NC_014908.1	108165	108726	R	frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.; chlorite dismutase family protein	complement(108165..108726)	Alicycliphilus denitrificans BC	
ALIDE_RS22500	CDS	ALIDE_RS22500	NC_014908.1	109133	109417	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	complement(109133..109417)	Alicycliphilus denitrificans BC	
ALIDE_RS22505	CDS	ALIDE_RS22505	NC_014908.1	109414	109692	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(109414..109692)	Alicycliphilus denitrificans BC	
ALIDE_RS22510	CDS	ALIDE_RS22510	NC_014908.1	109931	110524	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase family protein	109931..110524	Alicycliphilus denitrificans BC	
ALIDE_RS24875	CDS	ALIDE_RS24875	NC_014908.1	110521	110979	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4158 domain-containing protein	110521..>110979	Alicycliphilus denitrificans BC	
ALIDE_RS22515	CDS	ALIDE_RS22515	NC_014908.1	111461	113551	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Tn3 family transposase	111461..113551	Alicycliphilus denitrificans BC	
ALIDE_RS23815	CDS	ALIDE_RS23815	NC_014908.1	113600	114016	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; site-specific integrase	113600..114016	Alicycliphilus denitrificans BC	
ALIDE_RS22525	CDS	ALIDE_RS22525	NC_014908.1	114257	114895	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF4158 domain-containing protein	complement(<114257..114895)	Alicycliphilus denitrificans BC	
ALIDE_RS22530	CDS	mobI	NC_014908.1	116314	116775	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugative transfer protein MobI(A/C)	116314..116775	Alicycliphilus denitrificans BC	
ALIDE_RS22535	CDS	ALIDE_RS22535	NC_014908.1	117039	117539	D	Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.; hypothetical protein	117039..117539	Alicycliphilus denitrificans BC	
ALIDE_RS22540	CDS	ALIDE_RS22540	NC_014908.1	117756	119066	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; replication initiation protein	complement(117756..119066)	Alicycliphilus denitrificans BC	
ALIDE_RS22545	CDS	ALIDE_RS22545	NC_014911.1	505	4851	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; zincin-like metallopeptidase domain-containing protein	complement(505..4851)	Alicycliphilus denitrificans BC	
ALIDE_RS22550	CDS	ALIDE_RS22550	NC_014911.1	4855	5244	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; protein TraD	complement(4855..5244)	Alicycliphilus denitrificans BC	
ALIDE_RS22555	CDS	ALIDE_RS22555	NC_014911.1	5266	7329	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase III	complement(5266..7329)	Alicycliphilus denitrificans BC	
ALIDE_RS22560	CDS	traF	NC_014911.1	7341	7877	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugative transfer signal peptidase TraF	complement(7341..7877)	Alicycliphilus denitrificans BC	
ALIDE_RS22565	CDS	ALIDE_RS22565	NC_014911.1	7874	9787	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV secretory system conjugative DNA transfer family protein	complement(7874..9787)	Alicycliphilus denitrificans BC	
ALIDE_RS22570	CDS	traI	NC_014911.1	9784	12024	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TraI/MobA(P) family conjugative relaxase	complement(9784..12024)	Alicycliphilus denitrificans BC	
ALIDE_RS22575	CDS	traJ	NC_014911.1	12059	12433	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer transcriptional regulator TraJ	complement(12059..12433)	Alicycliphilus denitrificans BC	
ALIDE_RS22580	CDS	ALIDE_RS22580	NC_014911.1	12807	13205	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TraK family protein	12807..13205	Alicycliphilus denitrificans BC	
ALIDE_RS22585	CDS	ALIDE_RS22585	NC_014911.1	13205	13930	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; ArsA-related P-loop ATPase	13205..13930	Alicycliphilus denitrificans BC	
ALIDE_RS22590	CDS	ALIDE_RS22590	NC_014911.1	13930	14370	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TraM	13930..14370	Alicycliphilus denitrificans BC	
ALIDE_RS22595	CDS	kfrC	NC_014911.1	14573	15226	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; IncP plasmid survival protein KfrC	complement(14573..15226)	Alicycliphilus denitrificans BC	
ALIDE_RS22600	CDS	kfrB	NC_014911.1	15255	15602	R	KfrA, KfrB, and KfrC together were shown to be essential for IncP-1 plasmid R751; Derived by automated computational analysis using gene prediction method: Protein Homology.; IncP plasmid survival protein KfrB	complement(15255..15602)	Alicycliphilus denitrificans BC	
ALIDE_RS22605	CDS	ALIDE_RS22605	NC_014911.1	15773	16804	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein	complement(15773..16804)	Alicycliphilus denitrificans BC	
ALIDE_RS22610	CDS	ALIDE_RS22610	NC_014911.1	16983	18032	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParB/RepB/Spo0J family partition protein	complement(16983..18032)	Alicycliphilus denitrificans BC	
ALIDE_RS22615	CDS	ALIDE_RS22615	NC_014911.1	18029	18793	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ParA family protein	complement(18029..18793)	Alicycliphilus denitrificans BC	
ALIDE_RS22620	CDS	ALIDE_RS22620	NC_014911.1	18790	19092	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator KorA	complement(18790..19092)	Alicycliphilus denitrificans BC	
ALIDE_RS22625	CDS	ALIDE_RS22625	NC_014911.1	19206	19736	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2761 domain-containing protein	complement(19206..19736)	Alicycliphilus denitrificans BC	
ALIDE_RS22630	CDS	kleE	NC_014911.1	19738	20067	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; KleE stable inheritance protein	complement(19738..20067)	Alicycliphilus denitrificans BC	
ALIDE_RS22635	CDS	ALIDE_RS22635	NC_014911.1	20212	20427	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF2688 domain-containing protein	complement(20212..20427)	Alicycliphilus denitrificans BC	
ALIDE_RS22640	CDS	kleA	NC_014911.1	20486	20722	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; stable inheritance protein KleA	complement(20486..20722)	Alicycliphilus denitrificans BC	
ALIDE_RS22645	CDS	korC	NC_014911.1	20882	21139	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional repressor KorC	complement(20882..21139)	Alicycliphilus denitrificans BC	
ALIDE_RS22650	CDS	ALIDE_RS22650	NC_014911.1	21156	22361	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(21156..22361)	Alicycliphilus denitrificans BC	
ALIDE_RS22655	CDS	ALIDE_RS22655	NC_014911.1	22413	22841	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; antirestriction protein	complement(22413..22841)	Alicycliphilus denitrificans BC	
ALIDE_RS24880	CDS	ALIDE_RS24880	NC_014911.1	24060	24778	D	frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; IS3 family transposase	24060..>24778	Alicycliphilus denitrificans BC	
ALIDE_RS22660	CDS	ALIDE_RS22660	NC_014911.1	24921	26207	R	internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; Tn3 family transposase	complement(24921..>26207)	Alicycliphilus denitrificans BC	
ALIDE_RS23845	CDS	ALIDE_RS23845	NC_014911.1	26517	26945	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; PaaI family thioesterase	complement(26517..26945)	Alicycliphilus denitrificans BC	
ALIDE_RS22665	CDS	istA	NC_014911.1	27927	29417	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21 family transposase	27927..29417	Alicycliphilus denitrificans BC	
ALIDE_RS22670	CDS	istB	NC_014911.1	29404	30162	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; IS21-like element helper ATPase IstB	29404..30162	Alicycliphilus denitrificans BC	
ALIDE_RS22675	CDS	ALIDE_RS22675	NC_014911.1	30159	30371	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	30159..30371	Alicycliphilus denitrificans BC	
ALIDE_RS22680	CDS	ALIDE_RS22680	NC_014911.1	30577	30861	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	complement(30577..30861)	Alicycliphilus denitrificans BC	
ALIDE_RS22685	CDS	ALIDE_RS22685	NC_014911.1	30858	31136	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	complement(30858..31136)	Alicycliphilus denitrificans BC	
ALIDE_RS22690	CDS	ALIDE_RS22690	NC_014911.1	31375	31968	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase family protein	31375..31968	Alicycliphilus denitrificans BC	
ALIDE_RS22695	CDS	ALIDE_RS22695	NC_014911.1	31965	34994	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Tn3 family transposase	31965..34994	Alicycliphilus denitrificans BC	
ALIDE_RS23855	CDS	ALIDE_RS23855	NC_014911.1	35025	36755	R	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; Tn3-like element IS1071 family transposase	complement(<35025..36755)	Alicycliphilus denitrificans BC	
ALIDE_RS22705	CDS	ALIDE_RS22705	NC_014911.1	36898	37245	D	incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; DDE-type integrase/transposase/recombinase	<36898..>37245	Alicycliphilus denitrificans BC	
ALIDE_RS22710	CDS	ALIDE_RS22710	NC_014911.1	37309	37569	D	incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase	37309..>37569	Alicycliphilus denitrificans BC	
ALIDE_RS22715	CDS	ALIDE_RS22715	NC_014911.1	37844	39013	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein	complement(37844..39013)	Alicycliphilus denitrificans BC	
ALIDE_RS22720	CDS	ALIDE_RS22720	NC_014911.1	39142	39846	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione binding-like protein	complement(39142..39846)	Alicycliphilus denitrificans BC	
ALIDE_RS22725	CDS	ALIDE_RS22725	NC_014911.1	39843	40457	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR/AcrR family transcriptional regulator	complement(39843..40457)	Alicycliphilus denitrificans BC	
ALIDE_RS22730	CDS	ALIDE_RS22730	NC_014911.1	40521	41315	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; SDR family NAD(P)-dependent oxidoreductase	complement(40521..41315)	Alicycliphilus denitrificans BC	
ALIDE_RS22735	CDS	ALIDE_RS22735	NC_014911.1	41317	42033	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase C-terminal domain-containing protein	complement(41317..42033)	Alicycliphilus denitrificans BC	
ALIDE_RS22740	CDS	ALIDE_RS22740	NC_014911.1	42030	43019	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family transporter	complement(42030..43019)	Alicycliphilus denitrificans BC	
ALIDE_RS22745	CDS	ALIDE_RS22745	NC_014911.1	43016	43678	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxiredoxin-like family protein	complement(43016..43678)	Alicycliphilus denitrificans BC	
ALIDE_RS22750	CDS	ALIDE_RS22750	NC_014911.1	44017	44298	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system YafQ family toxin	complement(44017..44298)	Alicycliphilus denitrificans BC	
ALIDE_RS22755	CDS	ALIDE_RS22755	NC_014911.1	44285	44551	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system RelB/DinJ family antitoxin	complement(44285..44551)	Alicycliphilus denitrificans BC	
ALIDE_RS22760	CDS	trfA	NC_014911.1	45090	46310	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; plasmid replication initiator TrfA	complement(45090..46310)	Alicycliphilus denitrificans BC	
ALIDE_RS22765	CDS	ALIDE_RS22765	NC_014911.1	46357	46698	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein	complement(46357..46698)	Alicycliphilus denitrificans BC	
ALIDE_RS22770	CDS	ALIDE_RS22770	NC_014911.1	46812	47174	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator	46812..47174	Alicycliphilus denitrificans BC	
ALIDE_RS22775	CDS	trbB	NC_014911.1	47484	48446	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer ATPase TrbB	47484..48446	Alicycliphilus denitrificans BC	
ALIDE_RS22780	CDS	trbC	NC_014911.1	48463	48927	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer system pilin TrbC	48463..48927	Alicycliphilus denitrificans BC	
ALIDE_RS22785	CDS	ALIDE_RS22785	NC_014911.1	48931	49242	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TrbD	48931..49242	Alicycliphilus denitrificans BC	
ALIDE_RS22790	CDS	ALIDE_RS22790	NC_014911.1	49239	51797	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; VirB4 family type IV secretion/conjugal transfer ATPase	49239..51797	Alicycliphilus denitrificans BC	
ALIDE_RS22795	CDS	ALIDE_RS22795	NC_014911.1	51794	52576	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TrbF	51794..52576	Alicycliphilus denitrificans BC	
ALIDE_RS22800	CDS	trbG	NC_014911.1	52594	53493	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer protein TrbG	52594..53493	Alicycliphilus denitrificans BC	
ALIDE_RS22805	CDS	ALIDE_RS22805	NC_014911.1	53496	53984	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TrbH	53496..53984	Alicycliphilus denitrificans BC	
ALIDE_RS22810	CDS	ALIDE_RS22810	NC_014911.1	53989	55410	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TrbI/VirB10 family protein	53989..55410	Alicycliphilus denitrificans BC	
ALIDE_RS22815	CDS	trbJ	NC_014911.1	55431	56195	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer protein TrbJ	55431..56195	Alicycliphilus denitrificans BC	
ALIDE_RS22820	CDS	trbK	NC_014911.1	56205	56432	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; entry exclusion lipoprotein TrbK	56205..56432	Alicycliphilus denitrificans BC	
ALIDE_RS22825	CDS	trbL	NC_014911.1	56443	58161	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; P-type conjugative transfer protein TrbL	56443..58161	Alicycliphilus denitrificans BC	
ALIDE_RS22830	CDS	ALIDE_RS22830	NC_014911.1	58179	58766	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TrbM/KikA/MpfK family conjugal transfer protein	58179..58766	Alicycliphilus denitrificans BC	
ALIDE_RS22835	CDS	ALIDE_RS22835	NC_014911.1	58780	59415	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; transglycosylase SLT domain-containing protein	58780..59415	Alicycliphilus denitrificans BC	
ALIDE_RS22840	CDS	ALIDE_RS22840	NC_014911.1	59444	59710	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	59444..59710	Alicycliphilus denitrificans BC	
ALIDE_RS22845	CDS	ALIDE_RS22845	NC_014911.1	59710	60408	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TraX family protein	59710..60408	Alicycliphilus denitrificans BC	
ALIDE_RS22850	CDS	ALIDE_RS22850	NC_014911.1	60424	60855	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; OmpA family protein	60424..60855	Alicycliphilus denitrificans BC	
ALIDE_RS22855	CDS	ALIDE_RS22855	NC_014911.1	61008	61583	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase family protein	complement(61008..61583)	Alicycliphilus denitrificans BC	
ALIDE_RS22860	CDS	ALIDE_RS22860	NC_014911.1	61710	61946	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; type II toxin-antitoxin system YafQ family toxin	complement(61710..61946)	Alicycliphilus denitrificans BC	
ALIDE_RS22865	CDS	ALIDE_RS22865	NC_014911.1	61983	64949	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; Tn3 family transposase	complement(61983..64949)	Alicycliphilus denitrificans BC	
ALIDE_RS22870	CDS	ALIDE_RS22870	NC_014911.1	65153	66835	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DDE-type integrase/transposase/recombinase	65153..66835	Alicycliphilus denitrificans BC	
ALIDE_RS22875	CDS	ALIDE_RS22875	NC_014911.1	66838	67746	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TniB family NTP-binding protein	66838..67746	Alicycliphilus denitrificans BC	
ALIDE_RS22880	CDS	ALIDE_RS22880	NC_014911.1	67743	68960	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; TniQ family protein	67743..68960	Alicycliphilus denitrificans BC	
ALIDE_RS22885	CDS	ALIDE_RS22885	NC_014911.1	69021	69635	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase family protein	69021..69635	Alicycliphilus denitrificans BC	
ALIDE_RS22890	CDS	merE	NC_014911.1	69688	69924	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; broad-spectrum mercury transporter MerE	complement(69688..69924)	Alicycliphilus denitrificans BC	
ALIDE_RS22895	CDS	merD	NC_014911.1	69921	70286	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; mercury resistance co-regulator MerD	complement(69921..70286)	Alicycliphilus denitrificans BC	
ALIDE_RS22900	CDS	merA	NC_014911.1	70303	71949	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; mercury(II) reductase	complement(70303..71949)	Alicycliphilus denitrificans BC	
ALIDE_RS22905	CDS	merF	NC_014911.1	71946	72191	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; mercury resistance system transport protein MerF	complement(71946..72191)	Alicycliphilus denitrificans BC	
ALIDE_RS22910	CDS	merP	NC_014911.1	72194	72469	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; mercury resistance system periplasmic binding protein MerP	complement(72194..72469)	Alicycliphilus denitrificans BC	
ALIDE_RS22915	CDS	merT	NC_014911.1	72485	72835	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; mercuric ion transporter MerT	complement(72485..72835)	Alicycliphilus denitrificans BC	
ALIDE_RS22920	CDS	merR	NC_014911.1	72907	73341	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; Hg(II)-responsive transcriptional regulator	72907..73341	Alicycliphilus denitrificans BC	
ALIDE_RS22925	CDS	ALIDE_RS22925	NC_014911.1	73466	73855	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome P460 family protein	complement(73466..73855)	Alicycliphilus denitrificans BC	
ALIDE_RS22930	CDS	ALIDE_RS22930	NC_014911.1	74042	74575	R	Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymuconolactone decarboxylase family protein	complement(74042..74575)	Alicycliphilus denitrificans BC	
ALIDE_RS22935	CDS	ALIDE_RS22935	NC_014911.1	74693	75535	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator	74693..75535	Alicycliphilus denitrificans BC	
ALIDE_RS22940	CDS	ALIDE_RS22940	NC_014911.1	75713	76003	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotidyltransferase	75713..76003	Alicycliphilus denitrificans BC	
ALIDE_RS22945	CDS	ALIDE_RS22945	NC_014911.1	76000	76386	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; DUF86 domain-containing protein	76000..76386	Alicycliphilus denitrificans BC	
ALIDE_RS23875	CDS	ALIDE_RS23875	NC_014911.1	76623	76979	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; cupin domain-containing protein	76623..76979	Alicycliphilus denitrificans BC	
ALIDE_RS22950	CDS	ALIDE_RS22950	NC_014911.1	77234	77560	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	77234..77560	Alicycliphilus denitrificans BC	
ALIDE_RS22955	CDS	ALIDE_RS22955	NC_014911.1	77557	78057	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	77557..78057	Alicycliphilus denitrificans BC	
ALIDE_RS22960	CDS	ALIDE_RS22960	NC_014911.1	78054	78425	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein	78054..78425	Alicycliphilus denitrificans BC	
ALIDE_RS22965	CDS	ALIDE_RS22965	NC_014911.1	78419	78976	D	Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase family protein	78419..78976	Alicycliphilus denitrificans BC	
ALIDE_RS02255	tRNA	ALIDE_RS02255	NC_014910.1	472750	472825	D	tRNA-Arg	472750..472825	Alicycliphilus denitrificans BC	
ALIDE_RS02260	tRNA	ALIDE_RS02260	NC_014910.1	472974	473059	D	tRNA-Tyr	472974..473059	Alicycliphilus denitrificans BC	
ALIDE_RS02265	tRNA	ALIDE_RS02265	NC_014910.1	473108	473181	D	tRNA-Gly	473108..473181	Alicycliphilus denitrificans BC	
ALIDE_RS02270	tRNA	ALIDE_RS02270	NC_014910.1	473222	473296	D	tRNA-Thr	473222..473296	Alicycliphilus denitrificans BC	
ALIDE_RS02280	tRNA	ALIDE_RS02280	NC_014910.1	474575	474650	D	tRNA-Trp	474575..474650	Alicycliphilus denitrificans BC	
ALIDE_RS02350	tRNA	ALIDE_RS02350	NC_014910.1	492551	492626	D	tRNA-Phe	492551..492626	Alicycliphilus denitrificans BC	
ALIDE_RS04505	tRNA	ALIDE_RS04505	NC_014910.1	963264	963339	D	tRNA-Thr	963264..963339	Alicycliphilus denitrificans BC	
ALIDE_RS04590	tRNA	ALIDE_RS04590	NC_014910.1	982775	982851	R	tRNA-Pro	complement(982775..982851)	Alicycliphilus denitrificans BC	
ALIDE_RS04885	tRNA	ALIDE_RS04885	NC_014910.1	1043387	1043463	R	tRNA-Gln	complement(1043387..1043463)	Alicycliphilus denitrificans BC	
ALIDE_RS05170	tRNA	ALIDE_RS05170	NC_014910.1	1107343	1107419	R	tRNA-Arg	complement(1107343..1107419)	Alicycliphilus denitrificans BC	
ALIDE_RS05205	tRNA	ALIDE_RS05205	NC_014910.1	1113156	1113240	D	tRNA-Leu	1113156..1113240	Alicycliphilus denitrificans BC	
ALIDE_RS06400	tRNA	ALIDE_RS06400	NC_014910.1	1353566	1353641	R	tRNA-Lys	complement(1353566..1353641)	Alicycliphilus denitrificans BC	
ALIDE_RS06565	tRNA	ALIDE_RS06565	NC_014910.1	1393688	1393764	D	tRNA-Val	1393688..1393764	Alicycliphilus denitrificans BC	
ALIDE_RS07185	tRNA	ALIDE_RS07185	NC_014910.1	1516026	1516102	R	tRNA-Arg	complement(1516026..1516102)	Alicycliphilus denitrificans BC	
ALIDE_RS07375	tRNA	ALIDE_RS07375	NC_014910.1	1555666	1555741	R	tRNA-Thr	complement(1555666..1555741)	Alicycliphilus denitrificans BC	
ALIDE_RS07540	tRNA	ALIDE_RS07540	NC_014910.1	1592473	1592548	D	tRNA-Ala	1592473..1592548	Alicycliphilus denitrificans BC	
ALIDE_RS07545	tRNA	ALIDE_RS07545	NC_014910.1	1592569	1592644	D	tRNA-Glu	1592569..1592644	Alicycliphilus denitrificans BC	
ALIDE_RS07550	tRNA	ALIDE_RS07550	NC_014910.1	1592692	1592768	D	tRNA-Asp	1592692..1592768	Alicycliphilus denitrificans BC	
ALIDE_RS07555	tRNA	ALIDE_RS07555	NC_014910.1	1592775	1592850	D	tRNA-Ala	1592775..1592850	Alicycliphilus denitrificans BC	
ALIDE_RS07560	tRNA	ALIDE_RS07560	NC_014910.1	1592874	1592949	D	tRNA-Glu	1592874..1592949	Alicycliphilus denitrificans BC	
ALIDE_RS07565	tRNA	ALIDE_RS07565	NC_014910.1	1592997	1593073	D	tRNA-Asp	1592997..1593073	Alicycliphilus denitrificans BC	
ALIDE_RS07840	tRNA	ALIDE_RS07840	NC_014910.1	1646027	1646102	D	tRNA-His	1646027..1646102	Alicycliphilus denitrificans BC	
ALIDE_RS24040	tRNA	ALIDE_RS24040	NC_014910.1	1652979	1653101	D	tRNA-His	1652979..1653101	Alicycliphilus denitrificans BC	
ALIDE_RS08170	tRNA	ALIDE_RS08170	NC_014910.1	1711561	1711636	D	tRNA-Lys	1711561..1711636	Alicycliphilus denitrificans BC	
ALIDE_RS24105	tRNA	ALIDE_RS24105	NC_014910.1	1785621	1785700	D	tRNA-Ser	1785621..1785700	Alicycliphilus denitrificans BC	
ALIDE_RS09105	tRNA	ALIDE_RS09105	NC_014910.1	1898354	1898427	R	tRNA-Gly	complement(1898354..1898427)	Alicycliphilus denitrificans BC	
ALIDE_RS09140	tRNA	ALIDE_RS09140	NC_014910.1	1902802	1902878	D	tRNA-Pro	1902802..1902878	Alicycliphilus denitrificans BC	
ALIDE_RS09565	tRNA	ALIDE_RS09565	NC_014910.1	1999034	1999118	R	tRNA-Leu	complement(1999034..1999118)	Alicycliphilus denitrificans BC	
ALIDE_RS09570	tRNA	ALIDE_RS09570	NC_014910.1	1999295	1999379	R	tRNA-Leu	complement(1999295..1999379)	Alicycliphilus denitrificans BC	
ALIDE_RS09745	tRNA	ALIDE_RS09745	NC_014910.1	2035587	2035662	D	tRNA-Ala	2035587..2035662	Alicycliphilus denitrificans BC	
ALIDE_RS10510	tRNA	ALIDE_RS10510	NC_014910.1	2172481	2172573	D	tRNA-Ser	2172481..2172573	Alicycliphilus denitrificans BC	
ALIDE_RS10970	tRNA	ALIDE_RS10970	NC_014910.1	2261156	2261230	D	tRNA-Val	2261156..2261230	Alicycliphilus denitrificans BC	
ALIDE_RS10975	tRNA	ALIDE_RS10975	NC_014910.1	2261265	2261339	D	tRNA-Val	2261265..2261339	Alicycliphilus denitrificans BC	
ALIDE_RS12440	tRNA	ALIDE_RS12440	NC_014910.1	2587160	2587236	R	tRNA-Pro	complement(2587160..2587236)	Alicycliphilus denitrificans BC	
ALIDE_RS12995	tRNA	ALIDE_RS12995	NC_014910.1	2701633	2701708	D	tRNA-Asn	2701633..2701708	Alicycliphilus denitrificans BC	
ALIDE_RS13000	tRNA	ALIDE_RS13000	NC_014910.1	2701761	2701836	D	tRNA-Asn	2701761..2701836	Alicycliphilus denitrificans BC	
ALIDE_RS13375	tRNA	ALIDE_RS13375	NC_014910.1	2786410	2786500	D	tRNA-Ser	2786410..2786500	Alicycliphilus denitrificans BC	
ALIDE_RS14365	tRNA	ALIDE_RS14365	NC_014910.1	2994259	2994334	R	tRNA-Val	complement(2994259..2994334)	Alicycliphilus denitrificans BC	
ALIDE_RS14390	tRNA	ALIDE_RS14390	NC_014910.1	2998308	2998399	R	tRNA-Leu	complement(2998308..2998399)	Alicycliphilus denitrificans BC	
ALIDE_RS14395	tRNA	ALIDE_RS14395	NC_014910.1	2998539	2998614	R	tRNA-Gly	complement(2998539..2998614)	Alicycliphilus denitrificans BC	
ALIDE_RS14835	tRNA	ALIDE_RS14835	NC_014910.1	3091261	3091334	R	tRNA-Cys	complement(3091261..3091334)	Alicycliphilus denitrificans BC	
ALIDE_RS14840	tRNA	ALIDE_RS14840	NC_014910.1	3091392	3091467	R	tRNA-Gly	complement(3091392..3091467)	Alicycliphilus denitrificans BC	
ALIDE_RS14865	tRNA	ALIDE_RS14865	NC_014910.1	3097583	3097668	R	tRNA-Leu	complement(3097583..3097668)	Alicycliphilus denitrificans BC	
ALIDE_RS15055	tRNA	ALIDE_RS15055	NC_014910.1	3142143	3142218	R	tRNA-Ala	complement(3142143..3142218)	Alicycliphilus denitrificans BC	
ALIDE_RS15060	tRNA	ALIDE_RS15060	NC_014910.1	3142249	3142325	R	tRNA-Ile	complement(3142249..3142325)	Alicycliphilus denitrificans BC	
ALIDE_RS16320	tRNA	ALIDE_RS16320	NC_014910.1	3419115	3419204	D	tRNA-Ser	3419115..3419204	Alicycliphilus denitrificans BC	
ALIDE_RS16745	tRNA	ALIDE_RS16745	NC_014910.1	3510066	3510155	R	tRNA-Ser	complement(3510066..3510155)	Alicycliphilus denitrificans BC	
ALIDE_RS17890	tRNA	ALIDE_RS17890	NC_014910.1	3736144	3736218	R	tRNA-Arg	complement(3736144..3736218)	Alicycliphilus denitrificans BC	
ALIDE_RS18135	tRNA	ALIDE_RS18135	NC_014910.1	3801243	3801319	D	tRNA-Met	3801243..3801319	Alicycliphilus denitrificans BC	
ALIDE_RS19045	tRNA	ALIDE_RS19045	NC_014910.1	4002018	4002093	R	tRNA-Ala	complement(4002018..4002093)	Alicycliphilus denitrificans BC	
ALIDE_RS19050	tRNA	ALIDE_RS19050	NC_014910.1	4002124	4002200	R	tRNA-Ile	complement(4002124..4002200)	Alicycliphilus denitrificans BC	
ALIDE_RS19670	tRNA	ALIDE_RS19670	NC_014910.1	4137240	4137316	R	tRNA-Met	complement(4137240..4137316)	Alicycliphilus denitrificans BC	
ALIDE_RS20375	tRNA	ALIDE_RS20375	NC_014910.1	4281109	4281184	R	tRNA-Ala	complement(4281109..4281184)	Alicycliphilus denitrificans BC	
ALIDE_RS20380	tRNA	ALIDE_RS20380	NC_014910.1	4281215	4281291	R	tRNA-Ile	complement(4281215..4281291)	Alicycliphilus denitrificans BC	
ALIDE_RS15045	rRNA	rrf	NC_014910.1	3138676	3138788	R	5S ribosomal RNA	complement(3138676..3138788)	Alicycliphilus denitrificans BC	
ALIDE_RS15050	rRNA	ALIDE_RS15050	NC_014910.1	3138905	3141783	R	23S ribosomal RNA	complement(3138905..3141783)	Alicycliphilus denitrificans BC	
ALIDE_RS15065	rRNA	ALIDE_RS15065	NC_014910.1	3142425	3143953	R	16S ribosomal RNA	complement(3142425..3143953)	Alicycliphilus denitrificans BC	
ALIDE_RS19035	rRNA	rrf	NC_014910.1	3998551	3998663	R	5S ribosomal RNA	complement(3998551..3998663)	Alicycliphilus denitrificans BC	
ALIDE_RS19040	rRNA	ALIDE_RS19040	NC_014910.1	3998780	4001658	R	23S ribosomal RNA	complement(3998780..4001658)	Alicycliphilus denitrificans BC	
ALIDE_RS19055	rRNA	ALIDE_RS19055	NC_014910.1	4002300	4003828	R	16S ribosomal RNA	complement(4002300..4003828)	Alicycliphilus denitrificans BC	
ALIDE_RS20365	rRNA	rrf	NC_014910.1	4277642	4277754	R	5S ribosomal RNA	complement(4277642..4277754)	Alicycliphilus denitrificans BC	
ALIDE_RS20370	rRNA	ALIDE_RS20370	NC_014910.1	4277871	4280749	R	23S ribosomal RNA	complement(4277871..4280749)	Alicycliphilus denitrificans BC	
ALIDE_RS20385	rRNA	ALIDE_RS20385	NC_014910.1	4281391	4282919	R	16S ribosomal RNA	complement(4281391..4282919)	Alicycliphilus denitrificans BC